Query 038106
Match_columns 349
No_of_seqs 187 out of 2777
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 12:52:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.4E-41 3.2E-45 316.4 28.5 339 3-348 286-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-40 7E-45 314.1 26.3 339 8-349 267-700 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 7.4E-39 2.5E-43 286.9 24.5 334 10-347 30-413 (455)
4 4eco_A Uncharacterized protein 100.0 1.6E-38 5.5E-43 294.8 23.9 333 2-348 198-584 (636)
5 3t6q_A CD180 antigen; protein- 100.0 8.5E-37 2.9E-41 283.1 28.3 333 3-342 50-462 (606)
6 4eco_A Uncharacterized protein 100.0 2.4E-37 8.1E-42 286.9 23.2 328 2-344 239-602 (636)
7 4ecn_A Leucine-rich repeat pro 100.0 7.1E-37 2.4E-41 288.8 26.5 333 2-348 440-824 (876)
8 3t6q_A CD180 antigen; protein- 100.0 1.8E-36 6.2E-41 280.9 28.2 107 3-110 74-180 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-36 3.7E-41 282.3 23.5 338 5-347 51-538 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 2.4E-36 8.1E-41 278.2 23.8 340 4-347 46-536 (570)
11 4ecn_A Leucine-rich repeat pro 100.0 1.1E-35 3.7E-40 280.8 25.8 328 2-345 481-843 (876)
12 4fmz_A Internalin; leucine ric 100.0 1.9E-34 6.5E-39 249.1 29.3 308 5-342 39-346 (347)
13 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-35 1.1E-39 272.4 26.1 340 3-346 73-562 (606)
14 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-34 4.2E-39 272.0 28.8 335 6-345 45-446 (680)
15 2id5_A Lingo-1, leucine rich r 100.0 1E-34 3.6E-39 261.3 25.5 320 13-343 14-334 (477)
16 3o6n_A APL1; leucine-rich repe 100.0 1.7E-34 6E-39 253.2 26.0 311 8-343 43-353 (390)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-34 4.2E-39 263.8 25.4 158 183-344 321-483 (520)
18 3j0a_A TOLL-like receptor 5; m 100.0 7.2E-35 2.5E-39 278.9 23.9 344 3-347 41-522 (844)
19 2id5_A Lingo-1, leucine rich r 100.0 7.2E-35 2.4E-39 262.4 22.6 302 10-319 32-334 (477)
20 2z63_A TOLL-like receptor 4, v 100.0 1.1E-34 3.6E-39 267.2 24.1 331 10-348 28-513 (570)
21 2z81_A CD282 antigen, TOLL-lik 100.0 8.6E-35 3E-39 266.6 22.9 144 2-153 20-165 (549)
22 1ziw_A TOLL-like receptor 3; i 100.0 6E-34 2.1E-38 267.3 28.6 330 12-343 250-623 (680)
23 3v47_A TOLL-like receptor 5B a 100.0 1.3E-34 4.5E-39 259.3 23.1 326 13-347 13-389 (455)
24 1o6v_A Internalin A; bacterial 100.0 2.7E-33 9.1E-38 251.1 31.2 308 5-343 63-389 (466)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.7E-34 1.6E-38 262.0 24.7 318 10-344 52-512 (562)
26 3oja_B Anopheles plasmodium-re 100.0 1.6E-33 5.6E-38 259.8 26.3 311 8-343 49-359 (597)
27 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-34 4.7E-39 265.2 18.9 339 3-346 43-514 (549)
28 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-33 3.9E-38 270.5 25.2 325 8-342 22-394 (844)
29 1o6v_A Internalin A; bacterial 100.0 2.4E-32 8.1E-37 245.0 30.0 314 7-346 43-370 (466)
30 2z7x_B TOLL-like receptor 1, v 100.0 8E-33 2.7E-37 251.8 24.8 326 2-348 15-462 (520)
31 3o6n_A APL1; leucine-rich repe 100.0 1.9E-32 6.5E-37 240.2 25.4 294 2-320 60-354 (390)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-32 8.6E-37 250.5 25.4 320 9-348 30-491 (562)
33 4fmz_A Internalin; leucine ric 100.0 3.8E-31 1.3E-35 228.5 28.4 289 30-346 40-328 (347)
34 3oja_B Anopheles plasmodium-re 100.0 7.8E-32 2.7E-36 248.6 25.1 290 5-319 70-359 (597)
35 2ft3_A Biglycan; proteoglycan, 100.0 4.9E-31 1.7E-35 226.2 24.7 288 35-340 34-331 (332)
36 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-30 3.8E-35 243.4 27.3 133 211-343 446-581 (635)
37 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-30 4.3E-35 243.1 25.8 343 4-349 70-562 (635)
38 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-34 5.6E-39 259.2 -1.0 339 5-344 23-413 (461)
39 1xku_A Decorin; proteoglycan, 100.0 4.1E-30 1.4E-34 220.3 26.0 289 35-340 32-330 (330)
40 3bz5_A Internalin-J, INLJ; leu 100.0 3.8E-30 1.3E-34 229.0 26.0 307 4-348 36-393 (457)
41 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-29 5.6E-34 225.0 27.2 301 5-338 59-408 (457)
42 1ogq_A PGIP-2, polygalacturona 100.0 2.7E-30 9.2E-35 219.3 17.1 250 59-341 50-303 (313)
43 1jl5_A Outer protein YOPM; leu 100.0 8.8E-30 3E-34 226.5 20.9 314 2-348 26-417 (454)
44 1xku_A Decorin; proteoglycan, 100.0 9.4E-29 3.2E-33 211.8 26.0 290 10-316 31-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-28 5.8E-33 210.4 22.5 289 10-316 33-331 (332)
46 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-29 9.7E-34 213.1 15.6 249 34-292 50-302 (313)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-30 3.7E-35 234.3 -0.3 332 9-343 2-384 (461)
48 1jl5_A Outer protein YOPM; leu 100.0 5.5E-27 1.9E-31 208.5 23.2 309 4-349 5-379 (454)
49 2z80_A TOLL-like receptor 2, v 99.9 5.9E-27 2E-31 202.5 17.5 254 60-319 53-315 (353)
50 2z66_A Variable lymphocyte rec 99.9 1.1E-26 3.8E-31 196.9 18.4 277 62-347 10-292 (306)
51 2z80_A TOLL-like receptor 2, v 99.9 4.3E-27 1.5E-31 203.4 15.8 280 8-296 29-316 (353)
52 2z66_A Variable lymphocyte rec 99.9 1.1E-26 3.7E-31 197.0 16.9 281 13-328 10-297 (306)
53 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-28 1.1E-32 207.2 6.8 260 35-315 11-272 (317)
54 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-26 1.4E-30 191.3 18.0 268 37-340 14-285 (285)
55 4fcg_A Uncharacterized protein 99.9 8.4E-26 2.9E-30 192.8 19.9 228 34-293 81-313 (328)
56 3zyi_A Leucine-rich repeat-con 99.9 3.1E-25 1E-29 198.1 22.4 225 60-293 76-302 (452)
57 1ozn_A Reticulon 4 receptor; N 99.9 6.4E-26 2.2E-30 190.1 16.7 225 13-272 14-239 (285)
58 3zyj_A Leucine-rich repeat-con 99.9 3.9E-25 1.3E-29 196.7 22.6 226 35-269 65-290 (440)
59 4fcg_A Uncharacterized protein 99.9 1.5E-25 5.1E-30 191.2 18.5 231 58-315 80-311 (328)
60 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-27 8.6E-32 201.6 7.3 239 81-339 32-272 (317)
61 3g06_A SSPH2 (leucine-rich rep 99.9 1E-24 3.5E-29 199.7 24.8 267 10-327 40-306 (622)
62 3ogk_B Coronatine-insensitive 99.9 1.1E-27 3.9E-32 221.3 3.9 331 12-344 140-528 (592)
63 3zyi_A Leucine-rich repeat-con 99.9 4.7E-25 1.6E-29 196.8 20.6 246 13-270 57-302 (452)
64 3zyj_A Leucine-rich repeat-con 99.9 5.3E-25 1.8E-29 195.8 20.7 228 10-247 64-292 (440)
65 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-24 7.8E-29 197.5 24.9 263 34-347 40-302 (622)
66 1wwl_A Monocyte differentiatio 99.9 4.3E-26 1.5E-30 193.5 9.5 252 30-319 39-310 (312)
67 3oja_A Leucine-rich immune mol 99.9 2.3E-25 7.8E-30 200.0 12.6 236 57-312 32-269 (487)
68 3ogk_B Coronatine-insensitive 99.9 1.7E-27 5.9E-32 220.1 -1.7 327 8-343 110-502 (592)
69 1wwl_A Monocyte differentiatio 99.9 1E-25 3.6E-30 191.2 8.4 249 56-343 40-310 (312)
70 2p1m_B Transport inhibitor res 99.9 2.5E-26 8.4E-31 212.5 1.8 133 209-342 371-519 (594)
71 2o6q_A Variable lymphocyte rec 99.9 5.6E-23 1.9E-27 170.7 21.7 180 163-342 38-218 (270)
72 3oja_A Leucine-rich immune mol 99.9 1.1E-24 3.7E-29 195.6 10.9 232 35-288 35-269 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 2.1E-22 7.2E-27 167.9 20.0 206 107-319 28-238 (276)
74 2p1m_B Transport inhibitor res 99.9 2.1E-25 7.1E-30 206.3 1.8 334 6-343 62-495 (594)
75 3rfs_A Internalin B, repeat mo 99.9 8.3E-23 2.9E-27 169.8 17.0 228 59-330 19-247 (272)
76 2z62_A TOLL-like receptor 4, v 99.9 3.5E-22 1.2E-26 166.5 19.5 206 59-296 28-239 (276)
77 3goz_A Leucine-rich repeat-con 99.9 3.6E-24 1.2E-28 185.6 7.1 259 14-296 2-299 (362)
78 3goz_A Leucine-rich repeat-con 99.9 6.5E-24 2.2E-28 183.9 8.1 253 40-320 4-299 (362)
79 2ca6_A RAN GTPase-activating p 99.9 7.7E-25 2.6E-29 191.6 2.2 134 186-319 159-317 (386)
80 1p9a_G Platelet glycoprotein I 99.9 7.9E-22 2.7E-26 165.1 19.9 202 103-342 6-208 (290)
81 2ast_B S-phase kinase-associat 99.9 1.9E-23 6.5E-28 179.4 8.3 255 59-326 47-314 (336)
82 1p9a_G Platelet glycoprotein I 99.9 3.3E-21 1.1E-25 161.4 20.1 110 185-294 99-208 (290)
83 2ast_B S-phase kinase-associat 99.9 6.3E-23 2.1E-27 176.2 9.3 254 12-302 49-314 (336)
84 2ca6_A RAN GTPase-activating p 99.9 1.5E-23 5E-28 183.4 5.1 250 25-297 23-319 (386)
85 2o6q_A Variable lymphocyte rec 99.9 9.6E-21 3.3E-25 157.2 21.6 112 184-295 107-219 (270)
86 3rfs_A Internalin B, repeat mo 99.9 5.5E-21 1.9E-25 158.8 19.4 205 132-349 37-242 (272)
87 3m19_A Variable lymphocyte rec 99.9 8.1E-21 2.8E-25 155.9 18.9 178 137-319 15-193 (251)
88 1h6u_A Internalin H; cell adhe 99.9 1E-20 3.6E-25 159.9 17.4 195 103-319 37-231 (308)
89 4glp_A Monocyte differentiatio 99.9 1.2E-20 4E-25 160.0 16.5 107 232-343 195-308 (310)
90 4glp_A Monocyte differentiatio 99.9 2.4E-21 8.2E-26 164.2 11.3 229 58-318 63-307 (310)
91 1h6u_A Internalin H; cell adhe 99.9 5.9E-20 2E-24 155.3 19.1 88 182-275 147-234 (308)
92 3m19_A Variable lymphocyte rec 99.8 8.5E-20 2.9E-24 149.8 18.2 180 107-296 14-194 (251)
93 2xwt_C Thyrotropin receptor; s 99.8 2.2E-20 7.6E-25 152.2 12.5 198 107-340 31-237 (239)
94 2xwt_C Thyrotropin receptor; s 99.8 1.8E-20 6E-25 152.8 11.7 183 161-346 30-222 (239)
95 2o6s_A Variable lymphocyte rec 99.8 1.6E-19 5.6E-24 143.8 13.7 171 162-343 28-199 (208)
96 2o6s_A Variable lymphocyte rec 99.8 3.4E-19 1.1E-23 142.0 14.3 175 165-349 10-185 (208)
97 1h6t_A Internalin B; cell adhe 99.8 2.4E-18 8.3E-23 144.1 16.3 173 132-319 42-214 (291)
98 4ay9_X Follicle-stimulating ho 99.8 3.9E-18 1.3E-22 146.8 17.1 247 6-267 6-255 (350)
99 3cvr_A Invasion plasmid antige 99.8 2.9E-18 9.9E-23 155.3 15.5 188 107-328 59-253 (571)
100 2v9t_B SLIT homolog 2 protein 99.8 4E-18 1.4E-22 136.7 13.9 151 165-318 14-165 (220)
101 4ay9_X Follicle-stimulating ho 99.8 3.6E-18 1.2E-22 147.1 14.6 242 62-316 12-257 (350)
102 1m9s_A Internalin B; cell inva 99.8 2.1E-17 7E-22 151.4 18.2 174 132-320 39-212 (605)
103 1h6t_A Internalin B; cell adhe 99.8 1.3E-17 4.3E-22 139.7 15.4 190 87-298 28-217 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 8.2E-18 2.8E-22 134.9 13.6 153 164-319 13-167 (220)
105 3e6j_A Variable lymphocyte rec 99.8 2.3E-17 7.8E-22 133.2 15.9 154 163-319 20-173 (229)
106 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.9E-22 131.2 12.7 152 184-343 42-195 (197)
107 4ezg_A Putative uncharacterize 99.7 8.7E-18 3E-22 132.5 10.5 151 162-319 44-195 (197)
108 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.9E-22 144.6 11.6 175 139-318 21-202 (361)
109 3e6j_A Variable lymphocyte rec 99.7 9.9E-17 3.4E-21 129.5 16.3 154 137-296 20-174 (229)
110 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.8E-22 137.3 11.3 168 136-319 19-186 (263)
111 1m9s_A Internalin B; cell inva 99.7 1.1E-16 3.7E-21 146.6 18.1 195 85-301 23-217 (605)
112 2xot_A Amphoterin-induced prot 99.7 3.4E-17 1.2E-21 141.6 13.5 178 109-296 20-204 (361)
113 3cvr_A Invasion plasmid antige 99.7 7.6E-17 2.6E-21 146.1 16.2 188 83-304 59-253 (571)
114 3sb4_A Hypothetical leucine ri 99.7 8.2E-18 2.8E-22 143.6 8.7 126 209-336 201-328 (329)
115 3sb4_A Hypothetical leucine ri 99.7 1.2E-17 4.2E-22 142.5 9.6 289 9-312 24-328 (329)
116 2v9t_B SLIT homolog 2 protein 99.7 1.2E-16 4.1E-21 128.1 14.6 152 139-295 14-166 (220)
117 2v70_A SLIT-2, SLIT homolog 2 99.7 2.4E-16 8.1E-21 126.4 14.9 154 138-296 13-168 (220)
118 2ell_A Acidic leucine-rich nuc 99.7 6.9E-17 2.4E-21 124.0 8.5 135 210-347 24-164 (168)
119 1xeu_A Internalin C; cellular 99.7 4.6E-16 1.6E-20 128.2 10.3 170 106-296 18-187 (263)
120 2ell_A Acidic leucine-rich nuc 99.6 6.3E-16 2.1E-20 118.6 10.2 132 185-318 23-160 (168)
121 1w8a_A SLIT protein; signaling 99.6 2.2E-15 7.7E-20 118.0 11.7 128 189-319 11-140 (192)
122 1dce_A Protein (RAB geranylger 99.6 2.4E-18 8.2E-23 156.6 -6.4 121 187-312 442-567 (567)
123 4fdw_A Leucine rich hypothetic 99.6 2.8E-14 9.7E-19 124.3 19.3 266 56-341 110-382 (401)
124 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 114.3 9.2 106 187-294 18-126 (149)
125 2je0_A Acidic leucine-rich nuc 99.6 6.4E-16 2.2E-20 116.0 7.5 129 208-338 15-149 (149)
126 1dce_A Protein (RAB geranylger 99.6 1.4E-17 4.8E-22 151.6 -3.8 104 236-343 443-547 (567)
127 4fdw_A Leucine rich hypothetic 99.6 1.2E-13 4E-18 120.5 19.8 264 33-317 112-382 (401)
128 4fs7_A Uncharacterized protein 99.6 2.6E-13 8.7E-18 118.7 21.1 308 5-337 66-374 (394)
129 1w8a_A SLIT protein; signaling 99.6 8.6E-15 2.9E-19 114.7 10.1 131 163-296 9-141 (192)
130 2o6r_A Variable lymphocyte rec 99.6 2.6E-14 8.7E-19 110.5 12.4 129 188-319 9-138 (177)
131 4b8c_D Glucose-repressible alc 99.6 8.6E-16 2.9E-20 144.1 4.7 188 135-339 172-369 (727)
132 4b8c_D Glucose-repressible alc 99.6 1.2E-15 4.3E-20 143.0 5.7 217 107-342 173-404 (727)
133 2wfh_A SLIT homolog 2 protein 99.6 4.8E-14 1.6E-18 110.4 13.0 127 189-319 13-140 (193)
134 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-14 4.3E-19 112.1 7.9 132 182-318 15-153 (176)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.3E-19 111.2 8.1 131 206-341 15-152 (176)
136 2wfh_A SLIT homolog 2 protein 99.5 2.2E-13 7.6E-18 106.6 13.8 128 164-295 12-140 (193)
137 4fs7_A Uncharacterized protein 99.5 1E-12 3.4E-17 114.9 18.5 305 4-334 88-393 (394)
138 1ds9_A Outer arm dynein; leuci 99.5 1.7E-16 5.9E-21 125.1 -5.4 133 205-343 43-186 (198)
139 2o6r_A Variable lymphocyte rec 99.5 4.5E-13 1.5E-17 103.5 13.9 131 163-296 8-139 (177)
140 4gt6_A Cell surface protein; l 99.4 1.6E-11 5.6E-16 107.2 20.6 316 4-341 57-390 (394)
141 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6.1E-20 119.3 -4.7 137 206-346 14-157 (198)
142 3un9_A NLR family member X1; l 99.4 1.1E-14 3.8E-19 125.7 -0.5 182 161-342 71-283 (372)
143 3un9_A NLR family member X1; l 99.4 2.4E-14 8.1E-19 123.6 -1.3 117 33-150 71-197 (372)
144 3g39_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 97.7 10.1 106 211-319 10-116 (170)
145 4gt6_A Cell surface protein; l 99.3 1.6E-10 5.4E-15 101.0 21.1 296 26-340 55-368 (394)
146 2r9u_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 95.1 10.7 104 212-318 14-118 (174)
147 3g39_A Variable lymphocyte rec 99.3 3.9E-11 1.3E-15 91.7 11.6 105 188-295 11-116 (170)
148 4h09_A Hypothetical leucine ri 99.3 1.1E-09 3.8E-14 95.1 22.0 140 184-328 215-355 (379)
149 2r9u_A Variable lymphocyte rec 99.3 4.9E-11 1.7E-15 91.5 11.6 104 189-295 15-119 (174)
150 2ra8_A Uncharacterized protein 99.2 2.3E-11 7.7E-16 104.2 6.1 11 136-146 107-117 (362)
151 4h09_A Hypothetical leucine ri 99.1 1.4E-08 4.9E-13 88.1 19.1 301 5-338 41-342 (379)
152 2ifg_A High affinity nerve gro 99.0 1.1E-09 3.6E-14 94.0 9.5 104 213-319 11-117 (347)
153 2ra8_A Uncharacterized protein 98.9 4.7E-10 1.6E-14 96.0 4.4 120 28-150 133-266 (362)
154 2ifg_A High affinity nerve gro 98.9 3.8E-09 1.3E-13 90.5 9.9 105 165-272 11-117 (347)
155 1io0_A Tropomodulin; LRR prote 98.8 1.4E-09 4.7E-14 84.2 1.8 115 204-318 30-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 3.3E-09 1.1E-13 82.1 0.9 116 180-295 30-165 (185)
157 3e4g_A ATP synthase subunit S, 98.5 2.5E-08 8.5E-13 75.2 2.6 92 26-118 53-150 (176)
158 3e4g_A ATP synthase subunit S, 98.5 3.2E-08 1.1E-12 74.6 1.9 33 188-220 63-95 (176)
159 3rw6_A Nuclear RNA export fact 98.2 2.8E-07 9.4E-12 74.9 0.7 61 257-319 169-234 (267)
160 3rw6_A Nuclear RNA export fact 98.2 2.4E-06 8E-11 69.4 5.9 106 6-114 137-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 6.1E-06 2.1E-10 63.4 1.4 113 205-317 36-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 2.1E-05 7.2E-10 60.4 2.5 113 181-293 36-169 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0032 1.1E-07 44.9 5.8 56 261-318 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0093 3.2E-07 42.5 6.1 56 238-295 12-69 (130)
165 2lz0_A Uncharacterized protein 78.0 2.9 9.9E-05 27.8 4.1 9 209-217 19-27 (100)
166 2lz0_A Uncharacterized protein 76.1 3 0.0001 27.7 3.7 46 269-315 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.4e-41 Score=316.41 Aligned_cols=339 Identities=32% Similarity=0.476 Sum_probs=246.4
Q ss_pred Chhhhcc-ccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhcc
Q 038106 3 PPEIGNL-RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81 (349)
Q Consensus 3 ~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (349)
|+.+... ++|++|++++|++.+..|..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..|..+..
T Consensus 286 p~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 365 (768)
T 3rgz_A 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365 (768)
T ss_dssp CCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred CHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh
Confidence 3444333 556666666655555555555555556666665555543444332235555555555555544333333333
Q ss_pred ---------------------------CCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccC
Q 038106 82 ---------------------------ASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSN 134 (349)
Q Consensus 82 ---------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 134 (349)
+++|++|++++|.+.+..+..+.++++|++|++++|.+....+. .+..
T Consensus 366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-----~l~~ 440 (768)
T 3rgz_A 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-----SLGS 440 (768)
T ss_dssp HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-----GGGG
T ss_pred hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-----HHhc
Confidence 44566666666666555666677777777777777776654333 3667
Q ss_pred CCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCe
Q 038106 135 CKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQG 214 (349)
Q Consensus 135 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 214 (349)
+++|+.|++++|.+....+. .+..+ ++++.|++++|.+.+..|..+..+++|++|++++|.+.+..+.++..+++|+.
T Consensus 441 l~~L~~L~L~~n~l~~~~p~-~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQ-ELMYV-KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCG-GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCCCCEEECCCCcccCcCCH-HHcCC-CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 77888888888877655443 23333 47888888888888778888888888888888888888788888888888888
Q ss_pred eecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhh-----------------------------------------
Q 038106 215 LRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPAC----------------------------------------- 253 (349)
Q Consensus 215 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------------------------------- 253 (349)
|++++|.+.+..|..+..+++|+.|++++|.+....|..
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 888888888788888888888888888888765333322
Q ss_pred -----------------------------hhCCCCCceEecCCccCCc-CCcccccCCCccEEEecCCcCCCCCCccccc
Q 038106 254 -----------------------------FSNLASLRILSLGSNELTS-IPLTFWNLNNILYLNFSSNFFTAPLPLEIGN 303 (349)
Q Consensus 254 -----------------------------~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 303 (349)
+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence 2234678889999998885 7888899999999999999999889999999
Q ss_pred cccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCCCC
Q 038106 304 LKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS 348 (349)
Q Consensus 304 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~ 348 (349)
+++|+.|++++|.+.+.+|..+..++.|++|+|++|+++|.+|++
T Consensus 679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 999999999999999999999999999999999999999999974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-40 Score=314.12 Aligned_cols=339 Identities=35% Similarity=0.555 Sum_probs=264.0
Q ss_pred ccccccEEecCCccccCccchhhcc-ccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchh-hccCCCc
Q 038106 8 NLRNLERLGLGLNKLIGTVPAAIFN-VSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRF-IFNASKL 85 (349)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L 85 (349)
.+++|++|++++|++.+.+|..+.. +++|++|++++|.+.+..+..+. .+++|++|++++|.+.+..|.. +..+++|
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 7899999999999999888887776 49999999999999777777765 8999999999999987566654 8899999
Q ss_pred eEEEccCCcccccccccccCCC-CCCEEEccCCcccCCCccc---------------------hhcccccCCCCCcEEeC
Q 038106 86 SILEFSKNSFSGFIPNTFGNLR-NLQKLRLYDNYLTSSTPEL---------------------SFLSSLSNCKSLTHIGL 143 (349)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~---------------------~~~~~l~~~~~L~~L~l 143 (349)
++|++++|.+.+..+..+..++ +|++|++++|.+....+.. .....+..+++|+.|++
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 9999999998866777666665 6777777766553211110 01123556677777777
Q ss_pred CCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCC
Q 038106 144 SNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLE 223 (349)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (349)
++|.+....+. .+..+ ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 426 s~N~l~~~~p~-~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 426 SFNYLSGTIPS-SLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp CSSEEESCCCG-GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCcccCcccH-HHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 77766544443 33333 36777777777777777777777788888888888877777777778888888888888888
Q ss_pred CCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCc-CCc---------------------------
Q 038106 224 GSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTS-IPL--------------------------- 275 (349)
Q Consensus 224 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~--------------------------- 275 (349)
+..|.++..+++|+.|++++|.+....+..+..+++|+.|++++|.+.. +|.
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 7788888888888888888888776777778888888888888886652 332
Q ss_pred -------------------------------------------ccccCCCccEEEecCCcCCCCCCccccccccccEEEc
Q 038106 276 -------------------------------------------TFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDF 312 (349)
Q Consensus 276 -------------------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 312 (349)
.+..+++|++|++++|.+.+.+|..+..+++|+.|++
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeC
Confidence 1233567888999999988888888999999999999
Q ss_pred cCCeeeeccCcccccCCCCceEecCCccccCCCCCCC
Q 038106 313 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349 (349)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~ 349 (349)
++|.+.+.+|..++.+++|+.|+|++|+++|.+|++|
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 9999998999999999999999999999999998754
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.4e-39 Score=286.88 Aligned_cols=334 Identities=20% Similarity=0.201 Sum_probs=264.1
Q ss_pred ccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEE
Q 038106 10 RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89 (349)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 89 (349)
++|++|++++|.+.+..+..+.++++|++|++++|.+....+...+..+++|++|++++|.+....+..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 67999999999998777888999999999999999875455444445899999999999998877788899999999999
Q ss_pred ccCCcccccccc--cccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCee
Q 038106 90 FSKNSFSGFIPN--TFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDF 167 (349)
Q Consensus 90 l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L 167 (349)
+++|.+.+..+. .+.++++|++|++++|.+....+.. .+..+++|++|++++|.+....+.....-....++.+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS----FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG----GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCccc----ccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 999998754333 3888999999999999887764431 2677899999999999887654442221111355666
Q ss_pred eecCcccccCcchh--------ccCCCCCCEEEcCCccCCCccchhc---------------------------------
Q 038106 168 KMHNCNVSGGIPEE--------ISNLTNLTTIDLGGNMLNGSIPITL--------------------------------- 206 (349)
Q Consensus 168 ~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~l--------------------------------- 206 (349)
+++++.+....+.. +..+++|++|++++|.+.+..+..+
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence 66666655432221 1234556666666665543222211
Q ss_pred ----c--ccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcC-Cccccc
Q 038106 207 ----S--KLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWN 279 (349)
Q Consensus 207 ----~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~ 279 (349)
. ..++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..+ +..+..
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 1 125899999999999888888899999999999999999877788889999999999999999885 667888
Q ss_pred CCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCCC
Q 038106 280 LNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347 (349)
Q Consensus 280 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~ 347 (349)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|.
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999999999887788899999999999999999976666778999999999999999998873
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-38 Score=294.79 Aligned_cols=333 Identities=17% Similarity=0.246 Sum_probs=242.8
Q ss_pred CChhhhccccccEEecCCccccCc-----------------cchhhc--cccccceeeccCceeccccCccccccCCccc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGT-----------------VPAAIF--NVSTLKSLELQDNSLFGSISSIIDVRLPNLE 62 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 62 (349)
||+.++++++|++|++++|++++. +|..+. ++++|++|++++|.+.+..|..+. .+++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCC
Confidence 577899999999999999998875 888888 999999999999988777776665 899999
Q ss_pred EEeccCCc-CCC-ccchhhccC------CCceEEEccCCcccccccc--cccCCCCCCEEEccCCccc-CCCccchhccc
Q 038106 63 RLLLWGNN-FSG-TIPRFIFNA------SKLSILEFSKNSFSGFIPN--TFGNLRNLQKLRLYDNYLT-SSTPELSFLSS 131 (349)
Q Consensus 63 ~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~ 131 (349)
+|++++|. +++ ..|..+..+ ++|++|++++|.+. .++. .++++++|++|++++|.+. .++ .
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-------~ 348 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-------A 348 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-------C
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-------h
Confidence 99999998 776 677777765 89999999999988 6676 7889999999999998877 443 2
Q ss_pred ccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCC--CCCEEEcCCccCCCccchhcc--
Q 038106 132 LSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLT--NLTTIDLGGNMLNGSIPITLS-- 207 (349)
Q Consensus 132 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~l~-- 207 (349)
+..+++|+.|++++|.+. ..+. .+..++.+++.|++++|.+. .+|..+...+ +|++|++++|.+.+..+..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPA-NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCT-TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hCCCCCCCEEECCCCccc-cccH-hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 556677888888887776 3333 34444433778888887777 5555555433 777778877777766665555
Q ss_pred -----ccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCC-------CCCceEecCCccCCcCCc
Q 038106 208 -----KLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNL-------ASLRILSLGSNELTSIPL 275 (349)
Q Consensus 208 -----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~ 275 (349)
..++|+.|++++|.++...+..+..+++|+.|++++|.+.......+... ++|++|++++|.++.+|.
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 505 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccCh
Confidence 55677777777777774433445567777777777777663222222222 277777777777777776
Q ss_pred ccc--cCCCccEEEecCCcCCCCCCccccccccccEEEc------cCCeeeeccCcccccCCCCceEecCCccccCCCCC
Q 038106 276 TFW--NLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDF------SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347 (349)
Q Consensus 276 ~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~ 347 (349)
.+. .+++|++|++++|.+.. .|..+..+++|+.|++ ++|.+.+.+|..+..+++|++|+|++|++ +.+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 665 67777777777777776 6666677777777777 44566667777777777777777777777 46665
Q ss_pred C
Q 038106 348 S 348 (349)
Q Consensus 348 ~ 348 (349)
.
T Consensus 584 ~ 584 (636)
T 4eco_A 584 K 584 (636)
T ss_dssp C
T ss_pred h
Confidence 4
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.5e-37 Score=283.07 Aligned_cols=333 Identities=20% Similarity=0.208 Sum_probs=177.6
Q ss_pred ChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccC
Q 038106 3 PPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNA 82 (349)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 82 (349)
|.+|+++++|++|++++|++.+..|..|.++++|++|++++|.+....+..+. .+++|++|++++|.+....+..+..+
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~l~~~~~~~l 128 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQTGISSIDFIPLHNQ 128 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS-SCTTCCEEECTTSCCSCGGGSCCTTC
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc-ccccccEeeccccCcccCCcchhccC
Confidence 34566667777777777666655666666677777777777666544444443 66677777777666665445556666
Q ss_pred CCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCc--EEeCCCCccccccCCcccc--
Q 038106 83 SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT--HIGLSNNPLDCILPKTSIG-- 158 (349)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~-- 158 (349)
++|++|++++|.+.......+..+++|++|++++|.+....+. .+..+++|+ .+++++|.+....+..+-.
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-----DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH-----HHHTTTTCCSEEEECTTCCCCEECTTTTTTCE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh-----hhhhhcccceeEEecCCCccCccChhHhhhcc
Confidence 6677777776666543333333466667776666665543322 244555555 5666666554332221100
Q ss_pred ----------------------------------------------Cc-ccccCeeeecCcccccCcchhccCCCCCCEE
Q 038106 159 ----------------------------------------------NL-SHSLEDFKMHNCNVSGGIPEEISNLTNLTTI 191 (349)
Q Consensus 159 ----------------------------------------------~~-~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L 191 (349)
.+ +.+++.++++++.+.+..+..+..+++|++|
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 283 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence 00 0034455555555554444445556666666
Q ss_pred EcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCC-hhhhhCCCCCceEecCCccC
Q 038106 192 DLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSI-PACFSNLASLRILSLGSNEL 270 (349)
Q Consensus 192 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 270 (349)
++++|.+. ..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.... ...+..+++|++|++++|.+
T Consensus 284 ~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 284 DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp ECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred eccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 66666555 34444555556666666666555444445555555555555555443222 22244445555555555544
Q ss_pred CcC---------------------------CcccccCCCccEEEecCCcCCCCCCc-cccccccccEEEccCCeeeeccC
Q 038106 271 TSI---------------------------PLTFWNLNNILYLNFSSNFFTAPLPL-EIGNLKVLVGMDFSMNNFSGVIP 322 (349)
Q Consensus 271 ~~~---------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 322 (349)
... +..+..+++|++|++++|.+....+. .+..+++|+.|++++|.+.+..+
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 432 33344444555555555544443222 24445555555555555544444
Q ss_pred cccccCCCCceEecCCcccc
Q 038106 323 TEIGGLKNLEYLFLGYNRLQ 342 (349)
Q Consensus 323 ~~l~~~~~L~~l~l~~~~~~ 342 (349)
..+..+++|++|++++|+++
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCG
T ss_pred HHHhCCCCCCEEECCCCCCC
Confidence 44555555555555555554
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-37 Score=286.92 Aligned_cols=328 Identities=18% Similarity=0.219 Sum_probs=277.8
Q ss_pred CChhhh--ccccccEEecCCccccCccchhhccccccceeeccCce-ecc-ccCccccc-----cCCcccEEeccCCcCC
Q 038106 2 IPPEIG--NLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNS-LFG-SISSIIDV-----RLPNLERLLLWGNNFS 72 (349)
Q Consensus 2 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~-----~l~~L~~L~l~~~~~~ 72 (349)
+|+.++ ++++|++|++++|++.+.+|..+.++++|++|++++|. +.+ ..|..+.. .+++|++|++++|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 788888 99999999999999999999999999999999999998 765 56665541 2499999999999998
Q ss_pred Cccch--hhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCC-CcEEeCCCCccc
Q 038106 73 GTIPR--FIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKS-LTHIGLSNNPLD 149 (349)
Q Consensus 73 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~ 149 (349)
..|. .+..+++|++|++++|.+.+.++ .+..+++|++|++++|.+...+. .+..+++ |++|++++|.+.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~------~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA------NFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCT------TSEEECTTCCEEECCSSCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccH------hhhhhcccCcEEEccCCcCc
Confidence 7777 89999999999999999986667 88899999999999999885553 3777888 999999999987
Q ss_pred cccCCccccCc-ccccCeeeecCcccccCcchhcc-------CCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCc
Q 038106 150 CILPKTSIGNL-SHSLEDFKMHNCNVSGGIPEEIS-------NLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNK 221 (349)
Q Consensus 150 ~~~~~~~~~~~-~~~l~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 221 (349)
..|. .+... ..+++.|++++|.+.+..|..+. .+++|++|++++|.+.+.....+..+++|+.|++++|.
T Consensus 391 -~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 391 -YIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp -SCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred -ccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 4443 22222 23799999999999988777777 77899999999999985555556678999999999999
Q ss_pred CCCCCch-hhccC-------CcccEEEcCCCccCCCChhhhh--CCCCCceEecCCccCCcCCcccccCCCccEEEe---
Q 038106 222 LEGSIPD-SICRL-------TELYELELGGNKLFGSIPACFS--NLASLRILSLGSNELTSIPLTFWNLNNILYLNF--- 288 (349)
Q Consensus 222 ~~~~~~~-~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l--- 288 (349)
++ ..+. .+... ++|+.|++++|.+. ..+..+. .+++|++|++++|.+..+|..+..+++|++|++
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSC
T ss_pred CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCC
Confidence 88 4443 33333 39999999999988 5666665 899999999999999999999999999999999
Q ss_pred ---cCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCC
Q 038106 289 ---SSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS 344 (349)
Q Consensus 289 ---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~ 344 (349)
++|.+.+..+..+..+++|+.|++++|.+ +.+|..+. ++|+.|+|++|++...
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 45777777888899999999999999999 47777655 8999999999998654
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.1e-37 Score=288.79 Aligned_cols=333 Identities=17% Similarity=0.210 Sum_probs=242.9
Q ss_pred CChhhhccccccEEecCCccccC-----------------ccchhhc--cccccceeeccCceeccccCccccccCCccc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIG-----------------TVPAAIF--NVSTLKSLELQDNSLFGSISSIIDVRLPNLE 62 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 62 (349)
||+.++++++|++|++++|++++ .+|..+. ++++|++|++++|.+....|..+. .+++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCC
Confidence 67889999999999999999887 3787776 899999999999987777776665 899999
Q ss_pred EEeccCCc-CCC-ccchhhccCC-------CceEEEccCCcccccccc--cccCCCCCCEEEccCCcccCCCccchhccc
Q 038106 63 RLLLWGNN-FSG-TIPRFIFNAS-------KLSILEFSKNSFSGFIPN--TFGNLRNLQKLRLYDNYLTSSTPELSFLSS 131 (349)
Q Consensus 63 ~L~l~~~~-~~~-~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 131 (349)
+|++++|. +.+ ..|..+..++ +|++|++++|.+. .+|. .+.++++|+.|++++|.+..++ .
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-------~ 590 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-------A 590 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-------C
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-------h
Confidence 99999997 775 5776666555 8999999999988 5666 7888999999999998877444 3
Q ss_pred ccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCC--CCCEEEcCCccCCCccchh---c
Q 038106 132 LSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLT--NLTTIDLGGNMLNGSIPIT---L 206 (349)
Q Consensus 132 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~---l 206 (349)
+..+++|+.|++++|.+. ..+. .+..++.+|+.|++++|.+. .+|..+...+ +|+.|++++|.+.+..+.. +
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPE-DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCT-TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hcCCCcceEEECcCCccc-cchH-HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 677888888888888887 3343 34445433888888888877 5565555543 3888888888776543321 1
Q ss_pred c--ccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhC-------CCCCceEecCCccCCcCCccc
Q 038106 207 S--KLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSN-------LASLRILSLGSNELTSIPLTF 277 (349)
Q Consensus 207 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~ 277 (349)
. ..++|+.|++++|.+.......+..+++|+.|++++|.+.......+.. +++|+.|++++|.+..+|..+
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l 747 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHh
Confidence 1 2346778888888777333333446777888888877766322222221 227778888888777777766
Q ss_pred c--cCCCccEEEecCCcCCCCCCccccccccccEEEccC------CeeeeccCcccccCCCCceEecCCccccCCCCCC
Q 038106 278 W--NLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSM------NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS 348 (349)
Q Consensus 278 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~ 348 (349)
. .+++|+.|++++|.+.+ .+..+..+++|+.|++++ |.+.+.+|..+..+++|+.|+|++|++ +.+|++
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 5 77778888888877776 566677777788887765 666667777777777888888888877 567764
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-36 Score=280.87 Aligned_cols=107 Identities=21% Similarity=0.188 Sum_probs=64.5
Q ss_pred ChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccC
Q 038106 3 PPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNA 82 (349)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 82 (349)
|.+|+++++|++|++++|++.+..|..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+.......+..+
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l 152 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL-HNQKTLESLYLGSNHISSIKLPKGFPT 152 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCC-TTCTTCCEEECCSSCCCCCCCCTTCCC
T ss_pred hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchh-ccCCcccEEECCCCcccccCcccccCC
Confidence 4567777888888887777776667777777777777777777644333333 366666666666666654322233335
Q ss_pred CCceEEEccCCcccccccccccCCCCCC
Q 038106 83 SKLSILEFSKNSFSGFIPNTFGNLRNLQ 110 (349)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 110 (349)
++|++|++++|.+....+..++.+++|+
T Consensus 153 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 153 EKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp TTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cccCEEEcccCcccccChhhhhhhcccc
Confidence 5566666655555443333444444444
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-36 Score=282.33 Aligned_cols=338 Identities=20% Similarity=0.200 Sum_probs=194.7
Q ss_pred hhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCC
Q 038106 5 EIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASK 84 (349)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (349)
+|+++++|++|++++|++++..+.+|.++++|++|++++|.+....+..+. .+++|++|++++|.+....+..+.++++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST-TCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC-CcccCCEEEccCCccccccccccCCCCC
Confidence 566777777777777776655666677777777777777766555454443 6677777777777666444455666666
Q ss_pred ceEEEccCCcccc-cccccccCCCCCCEEEccCCcccCCCccc-hhc---------------------------------
Q 038106 85 LSILEFSKNSFSG-FIPNTFGNLRNLQKLRLYDNYLTSSTPEL-SFL--------------------------------- 129 (349)
Q Consensus 85 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~--------------------------------- 129 (349)
|++|++++|.+.. ..+..++++++|++|++++|.+...++.. ...
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence 7777776666654 34556666666666666666544322110 000
Q ss_pred --------------------------------------------------------------------------------
Q 038106 130 -------------------------------------------------------------------------------- 129 (349)
Q Consensus 130 -------------------------------------------------------------------------------- 129 (349)
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 289 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSE
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCE
Confidence
Q ss_pred -----------ccccCCCCCcEEeCCCCccccccCCc-------------------cccCcccccCeeeecCcccccC--
Q 038106 130 -----------SSLSNCKSLTHIGLSNNPLDCILPKT-------------------SIGNLSHSLEDFKMHNCNVSGG-- 177 (349)
Q Consensus 130 -----------~~l~~~~~L~~L~l~~~~~~~~~~~~-------------------~~~~~~~~l~~L~l~~~~~~~~-- 177 (349)
..+..+++|+.|++++|.+. ..+.. .+.. .+++++|++++|.+...
T Consensus 290 L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~-l~~L~~L~ls~n~l~~~~~ 367 (606)
T 3vq2_A 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGC 367 (606)
T ss_dssp EEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCC-CTTCCEEECCSSCEEEEEE
T ss_pred EEecCccchhhhhccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhcc-CCCCCEEECcCCccCCCcc
Confidence 01112223444444444331 11100 0001 12455555555554433
Q ss_pred cchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCc-hhhccCCcccEEEcCCCccCCCChhhhhC
Q 038106 178 IPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIP-DSICRLTELYELELGGNKLFGSIPACFSN 256 (349)
Q Consensus 178 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 256 (349)
.+..+..+++|++|++++|.+.+ .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+..
T Consensus 368 ~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 446 (606)
T 3vq2_A 368 CSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446 (606)
T ss_dssp CCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred hhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC
Confidence 14445556666666666665542 33455556666666666666655444 45566666667776666665555555666
Q ss_pred CCCCceEecCCccCCc--CCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceE
Q 038106 257 LASLRILSLGSNELTS--IPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYL 334 (349)
Q Consensus 257 ~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l 334 (349)
+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 6666666666666654 45556666666666666666666555556666666666666666665556666666666666
Q ss_pred ecCCccccCCCCC
Q 038106 335 FLGYNRLQGSIPD 347 (349)
Q Consensus 335 ~l~~~~~~~~~p~ 347 (349)
++++|+++ .+|.
T Consensus 527 ~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 527 DCSFNRIE-TSKG 538 (606)
T ss_dssp ECTTSCCC-CEES
T ss_pred ECCCCcCc-ccCH
Confidence 66666665 3443
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=278.19 Aligned_cols=340 Identities=20% Similarity=0.211 Sum_probs=224.0
Q ss_pred hhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCC
Q 038106 4 PEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNAS 83 (349)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 83 (349)
.+|+++++|++|++++|++.+..+..|.++++|++|++++|.+....+..+. .+++|++|++++|.+....+..+++++
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc-CccccccccccccccccCCCccccccc
Confidence 3577777888888877777766666777777888888877777554444443 677777777777776644444566777
Q ss_pred CceEEEccCCcccc-cccccccCCCCCCEEEccCCcccCCCccc-hh---------------------------------
Q 038106 84 KLSILEFSKNSFSG-FIPNTFGNLRNLQKLRLYDNYLTSSTPEL-SF--------------------------------- 128 (349)
Q Consensus 84 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~--------------------------------- 128 (349)
+|++|++++|.+.. ..+..++++++|++|++++|.+...++.. ..
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 77777777777664 24666777777777777776554332110 00
Q ss_pred ----------------------------------------------------------------------cccccCCCCC
Q 038106 129 ----------------------------------------------------------------------LSSLSNCKSL 138 (349)
Q Consensus 129 ----------------------------------------------------------------------~~~l~~~~~L 138 (349)
...+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 0011223445
Q ss_pred cEEeCCCCccccccCCcccc-----------------------------------------CcccccCeeeecCcccccC
Q 038106 139 THIGLSNNPLDCILPKTSIG-----------------------------------------NLSHSLEDFKMHNCNVSGG 177 (349)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~~-----------------------------------------~~~~~l~~L~l~~~~~~~~ 177 (349)
+.|+++++.+... +. .+. ...++++.|++++|.+...
T Consensus 285 ~~L~l~~~~l~~l-~~-~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 285 SSFSLVSVTIERV-KD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp SEEEEESCEECSC-CB-CCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred cEEEecCccchhh-hh-hhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcc
Confidence 5555544443321 10 000 0112334444444443322
Q ss_pred c--chhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCc-hhhccCCcccEEEcCCCccCCCChhhh
Q 038106 178 I--PEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIP-DSICRLTELYELELGGNKLFGSIPACF 254 (349)
Q Consensus 178 ~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 254 (349)
. +..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+..+
T Consensus 363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 441 (570)
T 2z63_A 363 GCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441 (570)
T ss_dssp EEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh
Confidence 1 3334455555555555555543222 25566777777777776665444 456778888888888887776667777
Q ss_pred hCCCCCceEecCCccCC--cCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCc
Q 038106 255 SNLASLRILSLGSNELT--SIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLE 332 (349)
Q Consensus 255 ~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 332 (349)
..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 88888999999988886 3777888889999999999988886677888889999999999988877777788889999
Q ss_pred eEecCCccccCCCCC
Q 038106 333 YLFLGYNRLQGSIPD 347 (349)
Q Consensus 333 ~l~l~~~~~~~~~p~ 347 (349)
.|++++|++++..|.
T Consensus 522 ~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 522 KIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECCSSCBCCCTTT
T ss_pred EEEecCCcccCCCcc
Confidence 999999999887775
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-35 Score=280.79 Aligned_cols=328 Identities=18% Similarity=0.224 Sum_probs=271.1
Q ss_pred CChhhh--ccccccEEecCCccccCccchhhccccccceeeccCce-ecc-ccCcccc------ccCCcccEEeccCCcC
Q 038106 2 IPPEIG--NLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNS-LFG-SISSIID------VRLPNLERLLLWGNNF 71 (349)
Q Consensus 2 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~------~~l~~L~~L~l~~~~~ 71 (349)
+|+.++ ++++|++|++++|++.+.+|..+.++++|++|++++|. +.. ..|..+. ..+++|++|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 677777 99999999999999999999999999999999999998 655 4554433 2456999999999999
Q ss_pred CCccch--hhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCC-CcEEeCCCCcc
Q 038106 72 SGTIPR--FIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKS-LTHIGLSNNPL 148 (349)
Q Consensus 72 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~ 148 (349)
. ..|. .+.++++|++|++++|.+. .++ .+..+++|+.|++++|.+...+. .+..+++ |+.|++++|.+
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~------~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPE------DFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCT------TSCEECTTCCEEECCSSCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchH------HHhhccccCCEEECcCCCC
Confidence 8 7777 8999999999999999998 556 88999999999999999886553 3777888 99999999998
Q ss_pred ccccCCccccCcc-cccCeeeecCcccccCcchh---cc--CCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcC
Q 038106 149 DCILPKTSIGNLS-HSLEDFKMHNCNVSGGIPEE---IS--NLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKL 222 (349)
Q Consensus 149 ~~~~~~~~~~~~~-~~l~~L~l~~~~~~~~~~~~---l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 222 (349)
. ..|. .+.... .+++.|++++|.+.+..+.. +. .+++|+.|++++|.+.......+..+++|+.|++++|.+
T Consensus 632 ~-~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 632 K-YIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp C-SCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred C-cCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 7 3443 333222 35999999999998655432 22 345899999999999854444455789999999999998
Q ss_pred CCCCchhhc--------cCCcccEEEcCCCccCCCChhhhh--CCCCCceEecCCccCCcCCcccccCCCccEEEecC--
Q 038106 223 EGSIPDSIC--------RLTELYELELGGNKLFGSIPACFS--NLASLRILSLGSNELTSIPLTFWNLNNILYLNFSS-- 290 (349)
Q Consensus 223 ~~~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-- 290 (349)
. ..|..+. ++++|+.|++++|.+. ..+..+. .+++|+.|++++|.+..+|..+..+++|+.|++++
T Consensus 710 ~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 710 T-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp S-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred C-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 8 4444332 2349999999999988 5666676 89999999999999999999999999999999976
Q ss_pred ----CcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCC
Q 038106 291 ----NFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI 345 (349)
Q Consensus 291 ----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~ 345 (349)
|.+....|..+..+++|+.|++++|.+ +.+|..+. ++|+.|+|++|++...-
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 777777888899999999999999999 57887754 79999999999986543
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.9e-34 Score=249.13 Aligned_cols=308 Identities=22% Similarity=0.333 Sum_probs=256.5
Q ss_pred hhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCC
Q 038106 5 EIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASK 84 (349)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (349)
.+.++++|++|+++++.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~--~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI--SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence 4568899999999999886 344 38889999999999999855443 45899999999999998753 45889999
Q ss_pred ceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCccccc
Q 038106 85 LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSL 164 (349)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 164 (349)
|++|++++|.+....+ +..+++|++|++++|....... .+..+++|++|+++++.+....+ +..+ +++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~---~~~l-~~L 179 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS------PLSNMTGLNYLTVTESKVKDVTP---IANL-TDL 179 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG------GGTTCTTCCEEECCSSCCCCCGG---GGGC-TTC
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc------chhhCCCCcEEEecCCCcCCchh---hccC-CCC
Confidence 9999999999885433 8899999999999996544332 37788999999999998875533 3333 489
Q ss_pred CeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCC
Q 038106 165 EDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGN 244 (349)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 244 (349)
+.|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 180 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp SEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence 999999999885443 7889999999999998885443 7788999999999999885433 889999999999999
Q ss_pred ccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcc
Q 038106 245 KLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTE 324 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 324 (349)
.+... ..+..+++|++|++++|.+.+++ .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-- 328 (347)
T 4fmz_A 254 QISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328 (347)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--
T ss_pred ccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--
Confidence 88753 56888999999999999999884 57889999999999999988777778899999999999999986554
Q ss_pred cccCCCCceEecCCcccc
Q 038106 325 IGGLKNLEYLFLGYNRLQ 342 (349)
Q Consensus 325 l~~~~~L~~l~l~~~~~~ 342 (349)
+..+++|++|++++|+++
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 888999999999999986
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-35 Score=272.43 Aligned_cols=340 Identities=20% Similarity=0.172 Sum_probs=261.4
Q ss_pred ChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCC-ccchhhcc
Q 038106 3 PPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSG-TIPRFIFN 81 (349)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~ 81 (349)
|.+|+++++|++|++++|++.+..|..+.++++|++|++++|.+....+..+ ..+++|++|++++|.+.. ..|..+.+
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~ 151 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI-GQLITLKKLNVAHNFIHSCKLPAYFSN 151 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC-TTCTTCCEEECCSSCCCCCCCCGGGGT
T ss_pred HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccccc-CCCCCCCEEeCCCCcccceechHhHhh
Confidence 4568888899999998888887778888888888888888888755554444 478888888888887764 35777888
Q ss_pred CCCceEEEccCCccccccccc-----------------------------------------------------------
Q 038106 82 ASKLSILEFSKNSFSGFIPNT----------------------------------------------------------- 102 (349)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~----------------------------------------------------------- 102 (349)
+++|++|++++|.+....+..
T Consensus 152 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 231 (606)
T 3vq2_A 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231 (606)
T ss_dssp CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTC
T ss_pred cCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccc
Confidence 888888888777654322211
Q ss_pred -----------------------------------------------------------------------ccCCCCCCE
Q 038106 103 -----------------------------------------------------------------------FGNLRNLQK 111 (349)
Q Consensus 103 -----------------------------------------------------------------------~~~~~~L~~ 111 (349)
+..+++|++
T Consensus 232 ~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~ 311 (606)
T 3vq2_A 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 311 (606)
T ss_dssp EEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSE
T ss_pred ccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCE
Confidence 112224444
Q ss_pred EEccCCcccCCCcc--------------chhcccccCCCCCcEEeCCCCccccccC-CccccCcccccCeeeecCccccc
Q 038106 112 LRLYDNYLTSSTPE--------------LSFLSSLSNCKSLTHIGLSNNPLDCILP-KTSIGNLSHSLEDFKMHNCNVSG 176 (349)
Q Consensus 112 L~l~~~~~~~~~~~--------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~l~~L~l~~~~~~~ 176 (349)
|++++|.+...+.. ......+..+++|++|++++|.+..... ...+..+ +++++|++++|.+..
T Consensus 312 L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~ 390 (606)
T 3vq2_A 312 LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSFNGAII 390 (606)
T ss_dssp EEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC-SCCCEEECCSCSEEE
T ss_pred EEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC-CcccEeECCCCcccc
Confidence 44444444322210 0000134466788888888887764421 1123333 489999999999875
Q ss_pred CcchhccCCCCCCEEEcCCccCCCccc-hhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCC-CChhhh
Q 038106 177 GIPEEISNLTNLTTIDLGGNMLNGSIP-ITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFG-SIPACF 254 (349)
Q Consensus 177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~ 254 (349)
.+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+
T Consensus 391 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 469 (606)
T 3vq2_A 391 -MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469 (606)
T ss_dssp -ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred -chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh
Confidence 44678899999999999999886665 578889999999999999988888889999999999999999875 357778
Q ss_pred hCCCCCceEecCCccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCC-CCc
Q 038106 255 SNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLK-NLE 332 (349)
Q Consensus 255 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~ 332 (349)
..+++|++|++++|.++.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..++ +|+
T Consensus 470 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLA 548 (606)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCC
T ss_pred ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCc
Confidence 8999999999999999884 667889999999999999999977888999999999999999998 5777788887 599
Q ss_pred eEecCCccccCCCC
Q 038106 333 YLFLGYNRLQGSIP 346 (349)
Q Consensus 333 ~l~l~~~~~~~~~p 346 (349)
++++++|++.+.-|
T Consensus 549 ~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 549 FFNLTNNSVACICE 562 (606)
T ss_dssp EEECCSCCCCCSST
T ss_pred EEEccCCCcccCCc
Confidence 99999999987544
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-34 Score=272.00 Aligned_cols=335 Identities=24% Similarity=0.268 Sum_probs=173.2
Q ss_pred hhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCc
Q 038106 6 IGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKL 85 (349)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 85 (349)
|+++++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+ ..+++|++|++++|.+....+..+.++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF-AFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh-ccCCCCCEEECCCCccCccChhHccccCCC
Confidence 5555555555555555554445555555555555555555432222222 245555555555555543333445555555
Q ss_pred eEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCc-----
Q 038106 86 SILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNL----- 160 (349)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----- 160 (349)
++|++++|.+....+..+.++++|++|++++|.+...++.. -....+++|+.|++++|.+....+. .+..+
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~ 199 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE---LDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFG 199 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH---HGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECE
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH---hhccccccccEEECCCCcccccChh-hhhhhhhhhh
Confidence 55555555554444444555555555555555444332210 0011234555555555554433221 11110
Q ss_pred ---------------------ccccCeeeecCcccccCcchhccCCC--CCCEEEcCCccCCCccchhccccCCCCeeec
Q 038106 161 ---------------------SHSLEDFKMHNCNVSGGIPEEISNLT--NLTTIDLGGNMLNGSIPITLSKLQKLQGLRF 217 (349)
Q Consensus 161 ---------------------~~~l~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 217 (349)
..+++.|+++++.+.+..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 02455555555555544444444443 3677777766666555555666677777777
Q ss_pred CCCcCCCCCchhhccCCcccEEEcCCCccCC-----C----ChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEE
Q 038106 218 EDNKLEGSIPDSICRLTELYELELGGNKLFG-----S----IPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLN 287 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~ 287 (349)
++|.+.+..+..+..+++|+.|+++++.... . ....+..+++|++|++++|.+..+ +..+..+++|++|+
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence 7776666666666677777777776653221 1 112456677888888888877764 33456666666666
Q ss_pred ecCCcC----------------------------CCCCCccccccccccEEEccCCeeeeccC-cccccCCCCceEecCC
Q 038106 288 FSSNFF----------------------------TAPLPLEIGNLKVLVGMDFSMNNFSGVIP-TEIGGLKNLEYLFLGY 338 (349)
Q Consensus 288 l~~~~~----------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~l~l~~ 338 (349)
+++|.+ ....+..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence 665542 22222334444555555555555544333 3445555555555555
Q ss_pred ccccCCC
Q 038106 339 NRLQGSI 345 (349)
Q Consensus 339 ~~~~~~~ 345 (349)
|++++..
T Consensus 440 n~l~~~~ 446 (680)
T 1ziw_A 440 NKYLQLT 446 (680)
T ss_dssp CSEEECC
T ss_pred CCcceeC
Confidence 5554433
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=261.34 Aligned_cols=320 Identities=21% Similarity=0.240 Sum_probs=187.6
Q ss_pred cEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccC
Q 038106 13 ERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSK 92 (349)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 92 (349)
+.++.++.+++ .+|..+. ++++.|++++|.+....+..+. .+++|++|++++|.+....+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555554443 3343222 3566666666666444343333 566666666666666555555666666666666666
Q ss_pred CcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCc
Q 038106 93 NSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNC 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 172 (349)
|.+....+..+.++++|++|++++|.+....+. .+..+++|+.|++++|.+....+. .+..+ ++|+.|++++|
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n 162 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-----MFQDLYNLKSLEVGDNDLVYISHR-AFSGL-NSLEQLTLEKC 162 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-----TTTTCTTCCEEEECCTTCCEECTT-SSTTC-TTCCEEEEESC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChh-----HccccccCCEEECCCCccceeChh-hccCC-CCCCEEECCCC
Confidence 666554444556666666666666655544322 355566666666666665543332 23333 25666666666
Q ss_pred ccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChh
Q 038106 173 NVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPA 252 (349)
Q Consensus 173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 252 (349)
.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+|+.|++++|.+......
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence 66655555566666666666666666654445566666666666666655444444444445666666666666544445
Q ss_pred hhhCCCCCceEecCCccCCcCC-cccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCC
Q 038106 253 CFSNLASLRILSLGSNELTSIP-LTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNL 331 (349)
Q Consensus 253 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 331 (349)
.+..+++|+.|++++|.+..++ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 5666666666666666666543 345566666666666666666555566666666666666666665444555666666
Q ss_pred ceEecCCccccC
Q 038106 332 EYLFLGYNRLQG 343 (349)
Q Consensus 332 ~~l~l~~~~~~~ 343 (349)
+.|++++|++.+
T Consensus 323 ~~L~l~~N~l~c 334 (477)
T 2id5_A 323 ETLILDSNPLAC 334 (477)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEccCCCccC
Confidence 666666666543
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-34 Score=253.19 Aligned_cols=311 Identities=18% Similarity=0.184 Sum_probs=258.1
Q ss_pred ccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceE
Q 038106 8 NLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSI 87 (349)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 87 (349)
.++++++|+++++.+....+..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+....+..+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhc-cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 46899999999998875555668899999999999999865555444 48999999999999998777778899999999
Q ss_pred EEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCee
Q 038106 88 LEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDF 167 (349)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L 167 (349)
|++++|.+....+..+.++++|++|++++|.+...++. .+..+++|++|++++|.+.... ...+ ++++.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~----~~~l-~~L~~L 191 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-----TFQATTSLQNLQLSSNRLTHVD----LSLI-PSLFHA 191 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-----TTSSCTTCCEEECCSSCCSBCC----GGGC-TTCSEE
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-----hccCCCCCCEEECCCCcCCccc----cccc-ccccee
Confidence 99999999866556678999999999999988776544 4778899999999999887542 2222 489999
Q ss_pred eecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccC
Q 038106 168 KMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLF 247 (349)
Q Consensus 168 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 247 (349)
+++++.+.. +...++|++|++++|.+... +. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 192 ~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 192 NVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp ECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence 999987763 34456899999999988743 22 2347899999999998854 57889999999999999988
Q ss_pred CCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCccccc
Q 038106 248 GSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGG 327 (349)
Q Consensus 248 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 327 (349)
...+..+..+++|++|++++|.+..++..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+... .+..
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~---~~~~ 337 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL---KLST 337 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC---CCCT
T ss_pred CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee---Cchh
Confidence 777888899999999999999999988777888999999999999986 666778899999999999998754 2677
Q ss_pred CCCCceEecCCccccC
Q 038106 328 LKNLEYLFLGYNRLQG 343 (349)
Q Consensus 328 ~~~L~~l~l~~~~~~~ 343 (349)
+++|+.|++++|++.+
T Consensus 338 ~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TCCCSEEECCSSCEEH
T ss_pred hccCCEEEcCCCCccc
Confidence 8999999999999764
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=263.75 Aligned_cols=158 Identities=23% Similarity=0.304 Sum_probs=91.3
Q ss_pred cCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCC--CCchhhccCCcccEEEcCCCccCCCChh-hhhCCCC
Q 038106 183 SNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEG--SIPDSICRLTELYELELGGNKLFGSIPA-CFSNLAS 259 (349)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~ 259 (349)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..+..+..+++|+.|++++|.+....+. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 345556666666666555455555555666666666665553 2334455566666666666655542332 2445566
Q ss_pred CceEecCCccCCc-CCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCc-ccccCCCCceEecC
Q 038106 260 LRILSLGSNELTS-IPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPT-EIGGLKNLEYLFLG 337 (349)
Q Consensus 260 L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~l~l~ 337 (349)
|++|++++|.+.. .+..+. ++|++|++++|.+.. .+..+..+++|+.|++++|.+.. +|. .+..+++|++|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECc
Confidence 6666666665543 222221 566677777776664 55555566777777777777663 443 36666777777777
Q ss_pred CccccCC
Q 038106 338 YNRLQGS 344 (349)
Q Consensus 338 ~~~~~~~ 344 (349)
+|++.+.
T Consensus 477 ~N~~~c~ 483 (520)
T 2z7x_B 477 TNPWDCS 483 (520)
T ss_dssp SSCBCCC
T ss_pred CCCCccc
Confidence 7776653
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-35 Score=278.86 Aligned_cols=344 Identities=21% Similarity=0.202 Sum_probs=198.6
Q ss_pred ChhhhccccccEEecCCccccCcc-chhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchh--h
Q 038106 3 PPEIGNLRNLERLGLGLNKLIGTV-PAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRF--I 79 (349)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~ 79 (349)
+.+|+++++|++|++++|...+.+ +..|.++++|++|++++|.+....+..+. .+++|++|++++|.+.+..+.. +
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccc
Confidence 455777777777777777544444 56677777777777777777555555544 6777777777777766544433 6
Q ss_pred ccCCCceEEEccCCccccccc-ccccCCCCCCEEEccCCcccCCCccc-hh--------------------cccccCCC-
Q 038106 80 FNASKLSILEFSKNSFSGFIP-NTFGNLRNLQKLRLYDNYLTSSTPEL-SF--------------------LSSLSNCK- 136 (349)
Q Consensus 80 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-~~--------------------~~~l~~~~- 136 (349)
..+++|++|++++|.+.+..+ ..++++++|++|++++|.+....+.. .. ...+..++
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 199 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence 677777777777777665433 45677777777777777654432211 00 00111112
Q ss_pred -----CCcEEeCCCCccccccCCccc-----------------------------------cCc-ccccCeeeecCcccc
Q 038106 137 -----SLTHIGLSNNPLDCILPKTSI-----------------------------------GNL-SHSLEDFKMHNCNVS 175 (349)
Q Consensus 137 -----~L~~L~l~~~~~~~~~~~~~~-----------------------------------~~~-~~~l~~L~l~~~~~~ 175 (349)
.|+.|++++|.+....+.... ..+ +.+++.|++++|.+.
T Consensus 200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~ 279 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279 (844)
T ss_dssp TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence 266777766644322111100 000 235666666666666
Q ss_pred cCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhh
Q 038106 176 GGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFS 255 (349)
Q Consensus 176 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 255 (349)
...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 359 (844)
T 3j0a_A 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359 (844)
T ss_dssp EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence 55555566666666666666666655555566666666666666666655555566666666666666665544444455
Q ss_pred CCCCCceEecCCccCCcCCc-----------------------------------------ccccCCCccEEEecCCcCC
Q 038106 256 NLASLRILSLGSNELTSIPL-----------------------------------------TFWNLNNILYLNFSSNFFT 294 (349)
Q Consensus 256 ~~~~L~~L~l~~~~~~~~~~-----------------------------------------~~~~~~~L~~L~l~~~~~~ 294 (349)
.+++|++|++++|.++.++. .+..+++|++|++++|.+.
T Consensus 360 ~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 55555555555554433210 0113455555555555444
Q ss_pred CC------------------------------CCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCC
Q 038106 295 AP------------------------------LPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS 344 (349)
Q Consensus 295 ~~------------------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~ 344 (349)
.. .+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|++++.
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence 21 112244556666777777766665666667777777777777777654
Q ss_pred CCC
Q 038106 345 IPD 347 (349)
Q Consensus 345 ~p~ 347 (349)
.|.
T Consensus 520 ~~~ 522 (844)
T 3j0a_A 520 SHN 522 (844)
T ss_dssp CCC
T ss_pred Chh
Confidence 443
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-35 Score=262.42 Aligned_cols=302 Identities=21% Similarity=0.204 Sum_probs=260.3
Q ss_pred ccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEE
Q 038106 10 RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89 (349)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 89 (349)
+++++|++++|++.+..+..|..+++|++|++++|.+....+..+. .+++|++|++++|.+....+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 5899999999999877788999999999999999998666665554 899999999999999866666788999999999
Q ss_pred ccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeee
Q 038106 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKM 169 (349)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l 169 (349)
+++|.+....+..+..+++|++|++++|.+....+. .+..+++|+.|++++|.+....+ ..+..+ ++++.|++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l-~~L~~L~l 183 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-----AFSGLNSLEQLTLEKCNLTSIPT-EALSHL-HGLIVLRL 183 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-----SSTTCTTCCEEEEESCCCSSCCH-HHHTTC-TTCCEEEE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChh-----hccCCCCCCEEECCCCcCcccCh-hHhccc-CCCcEEeC
Confidence 999999887788899999999999999988765543 47789999999999998875432 234444 48999999
Q ss_pred cCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCC
Q 038106 170 HNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGS 249 (349)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 249 (349)
+++.+....+..+..+++|++|++++|...+..+.......+|+.|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence 99999877777889999999999999887766665555566999999999999866556789999999999999998877
Q ss_pred ChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee
Q 038106 250 IPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 250 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
.+..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 777788999999999999999985 6688899999999999999998766778899999999999998864
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=267.18 Aligned_cols=331 Identities=21% Similarity=0.226 Sum_probs=227.3
Q ss_pred ccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEE
Q 038106 10 RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89 (349)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 89 (349)
+++++|++++|++++..+..|.++++|++|++++|.+....+..+ ..+++|++|++++|.+....+..|..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccc-cCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 579999999999987778889999999999999999865555444 4899999999999999876678899999999999
Q ss_pred ccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCc---------
Q 038106 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNL--------- 160 (349)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--------- 160 (349)
+++|.+.......++++++|++|++++|.+...... ..+..+++|++|++++|.+....+. .+..+
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp----~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP----EYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLS 181 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC----GGGGGCTTCCEEECTTSCCCEECGG-GGHHHHTCTTCCCE
T ss_pred ccccccccCCCccccccccccEEecCCCccceecCh----hhhcccCCCCEEeCcCCccceecHH-Hccchhccchhhhh
Confidence 999999866655789999999999999988763211 2477788999999988876543211 00000
Q ss_pred --------------------------------------------------------------------------------
Q 038106 161 -------------------------------------------------------------------------------- 160 (349)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (349)
T Consensus 182 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred cccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence
Q ss_pred -------------------ccccCeeeecCcccccCcchhcc--------------------------------------
Q 038106 161 -------------------SHSLEDFKMHNCNVSGGIPEEIS-------------------------------------- 183 (349)
Q Consensus 161 -------------------~~~l~~L~l~~~~~~~~~~~~l~-------------------------------------- 183 (349)
.++++.++++++.+.. ++..+.
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence 1233444444443331 222121
Q ss_pred ----CCCCCCEEEcCCccCCCcc--chhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCCh-hhhhC
Q 038106 184 ----NLTNLTTIDLGGNMLNGSI--PITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIP-ACFSN 256 (349)
Q Consensus 184 ----~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 256 (349)
.+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+....+ ..+..
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhc
Confidence 2233333333333333211 2333444555555555554442222 25566666666666666554333 34566
Q ss_pred CCCCceEecCCccCCc-CCcccccCCCccEEEecCCcCC-CCCCccccccccccEEEccCCeeeeccCcccccCCCCceE
Q 038106 257 LASLRILSLGSNELTS-IPLTFWNLNNILYLNFSSNFFT-APLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYL 334 (349)
Q Consensus 257 ~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l 334 (349)
+++|++|++++|.+.. .+..+..+++|++|++++|.+. ...+..+..+++|+.|++++|.+.+..|..+..+++|++|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 7777788887777766 4556677788888888888776 3455667778888888888888887777788888888888
Q ss_pred ecCCccccCCCCCC
Q 038106 335 FLGYNRLQGSIPDS 348 (349)
Q Consensus 335 ~l~~~~~~~~~p~~ 348 (349)
++++|++++..|+.
T Consensus 500 ~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 500 NMASNQLKSVPDGI 513 (570)
T ss_dssp ECCSSCCSCCCTTT
T ss_pred eCCCCcCCCCCHHH
Confidence 88888888766554
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.6e-35 Score=266.55 Aligned_cols=144 Identities=22% Similarity=0.256 Sum_probs=107.7
Q ss_pred CChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhcc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (349)
+|+.+. ++|++|++++|++++..+..+.++++|++|++++|.+....+..+. .+++|++|++++|.+....+..+.+
T Consensus 20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCCccCccCHHHhcc
Confidence 444443 6888999998888877778888889999999998888665555554 7888999999998888666667888
Q ss_pred CCCceEEEccCCccccc-ccccccCCCCCCEEEccCCc-ccCCCccchhcccccCCCCCcEEeCCCCccccccC
Q 038106 82 ASKLSILEFSKNSFSGF-IPNTFGNLRNLQKLRLYDNY-LTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILP 153 (349)
Q Consensus 82 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 153 (349)
+++|++|++++|.+... .+..++++++|++|++++|. +...+.. .+..+++|++|++++|.+....+
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-----DFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-----TTTTCCEEEEEEEEETTCCEECT
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh-----hhhcccccCeeeccCCcccccCh
Confidence 88999999998887752 45677888888888888886 3332221 36667778888887777665433
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6e-34 Score=267.33 Aligned_cols=330 Identities=21% Similarity=0.212 Sum_probs=140.0
Q ss_pred ccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCC-----ccc----hhhccC
Q 038106 12 LERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSG-----TIP----RFIFNA 82 (349)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~----~~~~~~ 82 (349)
|++|++++|++.+..+..+..+++|++|++++|.+....+..+. .+++|++|+++++.... ..| ..+..+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 55555555555544445555555555555555555433333332 45555555554432211 011 134445
Q ss_pred CCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccc-hh----------------------cccccCCCCCc
Q 038106 83 SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPEL-SF----------------------LSSLSNCKSLT 139 (349)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~----------------------~~~l~~~~~L~ 139 (349)
++|++|++++|.+....+..+..+++|++|++++|.+....... .+ ...+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 55566666555555544455555555666655554321110000 00 01122333333
Q ss_pred EEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCC--CccchhccccCCCCeeec
Q 038106 140 HIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLN--GSIPITLSKLQKLQGLRF 217 (349)
Q Consensus 140 ~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l 217 (349)
.|++++|.+....+...+..++ +++++++++|.+....+..+..+++|++|++++|.+. +..+..+..+++|+.|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 3333333332222221222221 3333444433333333333333444444444443332 122333444444444444
Q ss_pred CCCcCCCCCchhhccCCcccEEEcCCCccCCCC--------hhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEe
Q 038106 218 EDNKLEGSIPDSICRLTELYELELGGNKLFGSI--------PACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNF 288 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 288 (349)
++|.+++..+..+..+++|+.|++++|.+.... ...+..+++|++|++++|.+..++. .+..+++|++|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 444444333334444444444444444432210 0113344444444444444444433 2444445555555
Q ss_pred cCCcCCCCCCccccccccccEEEccCCeeeeccCcccc-cCCCCceEecCCccccC
Q 038106 289 SSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIG-GLKNLEYLFLGYNRLQG 343 (349)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~l~l~~~~~~~ 343 (349)
++|.+....+..+..+++|+.|++++|.+.+..+..+. .+++|+.+++++|++.+
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 55544443333344444555555555544433333333 34455555555555443
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-34 Score=259.29 Aligned_cols=326 Identities=23% Similarity=0.258 Sum_probs=264.5
Q ss_pred cEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCcc-chhhccCCCceEEEcc
Q 038106 13 ERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTI-PRFIFNASKLSILEFS 91 (349)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~ 91 (349)
+.++.++++++ .+|. + .++|++|++++|.+....+..+. .+++|++|++++|.+.... +..|..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 45666776665 5555 2 27899999999999766666554 8999999999999886443 5678899999999999
Q ss_pred CCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecC
Q 038106 92 KNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHN 171 (349)
Q Consensus 92 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~ 171 (349)
+|.+....+..++++++|++|++++|.+...... ...+..+++|++|++++|.+....+...+..+ +++++|++++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~ 163 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS---GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTF 163 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH---SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTT
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccC---cccccCcccCCEEECCCCccCccCcccccCCC-CcccEEeCCC
Confidence 9999887788999999999999999987652211 12377889999999999999876665445555 4899999999
Q ss_pred cccccCcchhccCC--CCCCEEEcCCccCCCccchh--------ccccCCCCeeecCCCcCCCCCchhhcc---------
Q 038106 172 CNVSGGIPEEISNL--TNLTTIDLGGNMLNGSIPIT--------LSKLQKLQGLRFEDNKLEGSIPDSICR--------- 232 (349)
Q Consensus 172 ~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~~~~--------- 232 (349)
|.+.+..+..+..+ .+++.++++++.+.+..+.. +...++|+.|++++|.+.+..+..+..
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 99988777766655 68999999999887544332 224578999999999876443333221
Q ss_pred ------------------------------CCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcC-CcccccCC
Q 038106 233 ------------------------------LTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLN 281 (349)
Q Consensus 233 ------------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~ 281 (349)
.++|+.|++++|.+....+..+..+++|++|++++|.+..+ +..+..++
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 25788999999988877788889999999999999999985 66788999
Q ss_pred CccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCCC
Q 038106 282 NILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347 (349)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~ 347 (349)
+|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|+
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 999999999999887778889999999999999999988889999999999999999999865443
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.7e-33 Score=251.15 Aligned_cols=308 Identities=27% Similarity=0.389 Sum_probs=210.2
Q ss_pred hhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCC
Q 038106 5 EIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASK 84 (349)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (349)
.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+....+ ...+++|++|++++|.+....+ +..+++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 135 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTN 135 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCChH--HcCCCC
Confidence 46777788888888877764433 7777788888888777744433 3477788888888777764322 667777
Q ss_pred ceEEEccCCccccccc-------------------ccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCC
Q 038106 85 LSILEFSKNSFSGFIP-------------------NTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSN 145 (349)
Q Consensus 85 L~~L~l~~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 145 (349)
|++|++++|.+..... ..+.++++|++|++++|.+...+ .+..+++|++|++++
T Consensus 136 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-------VLAKLTNLESLIATN 208 (466)
T ss_dssp CSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-------GGGGCTTCSEEECCS
T ss_pred CCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-------hhccCCCCCEEEecC
Confidence 7777777776653210 11344455555555555544332 244556666666666
Q ss_pred CccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCC
Q 038106 146 NPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS 225 (349)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 225 (349)
|.+....+ +.. .++++.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 209 n~l~~~~~---~~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 280 (466)
T 1o6v_A 209 NQISDITP---LGI-LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280 (466)
T ss_dssp SCCCCCGG---GGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC
T ss_pred Cccccccc---ccc-cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc
Confidence 66554332 111 24677777777766643 246667777777777777764333 66777788888888877643
Q ss_pred CchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccc
Q 038106 226 IPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLK 305 (349)
Q Consensus 226 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 305 (349)
.+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.+. +..+++|++|++++|.+.+. ..+..++
T Consensus 281 ~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 281 SP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred cc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--hhhccCC
Confidence 33 6677888888888887764332 6778888888888888877654 66788888888888888764 4677888
Q ss_pred cccEEEccCCeeeeccCcccccCCCCceEecCCccccC
Q 038106 306 VLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 343 (349)
Q Consensus 306 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 343 (349)
+|+.|++++|.+.+..| +..+++|+.|++++|++++
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 89999999998886655 7888899999999998876
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.7e-34 Score=261.99 Aligned_cols=318 Identities=21% Similarity=0.239 Sum_probs=187.4
Q ss_pred ccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEE
Q 038106 10 RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89 (349)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 89 (349)
++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+. .+++|++|++++|.+. ..|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 5677777777777655556677777777777777776544444443 6777777777777666 44443 567777777
Q ss_pred ccCCccccc-ccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCC--cEEeCCCCcc--ccccCCccccCc----
Q 038106 90 FSKNSFSGF-IPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSL--THIGLSNNPL--DCILPKTSIGNL---- 160 (349)
Q Consensus 90 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~~~---- 160 (349)
+++|.+... .+..++++++|++|++++|.+.... +..++++ +.|++++|.+ ....+. .+..+
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~--------~~~l~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~ 198 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--------LLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTTV 198 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT--------TGGGTTSCEEEEEEEESSCCCCSSSCC-EEEECCEEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccCc--------hhhhhhceeeEEEeecccccccccCcc-cccccCcce
Confidence 777776642 2356667777777777776654321 2222333 5555555444 111110 00000
Q ss_pred ----------------------------------------------------------------------------cccc
Q 038106 161 ----------------------------------------------------------------------------SHSL 164 (349)
Q Consensus 161 ----------------------------------------------------------------------------~~~l 164 (349)
..++
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 0144
Q ss_pred CeeeecCcccccCcchhc-----------------------------------------------------cCCCCCCEE
Q 038106 165 EDFKMHNCNVSGGIPEEI-----------------------------------------------------SNLTNLTTI 191 (349)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l-----------------------------------------------------~~~~~L~~L 191 (349)
++|++++|.+.+.+|..+ ..+++|++|
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L 358 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence 555555555443333222 455666666
Q ss_pred EcCCccCCCccchhccccCCCCeeecCCCcCCCC--CchhhccCCcccEEEcCCCccCC-CChhhhhCCCCCceEecCCc
Q 038106 192 DLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS--IPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRILSLGSN 268 (349)
Q Consensus 192 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 268 (349)
++++|.+.+..+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+.. .....+..+++|++|++++|
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 7766666655555666666777777777666542 23445666677777777766654 22233556666777777777
Q ss_pred cCCc-CCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcc-cccCCCCceEecCCccccCC
Q 038106 269 ELTS-IPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTE-IGGLKNLEYLFLGYNRLQGS 344 (349)
Q Consensus 269 ~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~l~l~~~~~~~~ 344 (349)
.+.. .+..+. ++|++|++++|.+.. ++..+..+++|+.|++++|.+.. +|.. +..+++|+.|++++|++.+.
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCC
Confidence 6654 222221 577777777777765 44445577777777777777773 4443 67777777777777777654
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-33 Score=259.78 Aligned_cols=311 Identities=18% Similarity=0.183 Sum_probs=259.0
Q ss_pred ccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceE
Q 038106 8 NLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSI 87 (349)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 87 (349)
.+++++.++++++.+....+..+..+++|++|++++|.+....+..+. .+++|++|++++|.+....+..+..+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 467889999999988766666788899999999999998665555554 8999999999999998777777889999999
Q ss_pred EEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCee
Q 038106 88 LEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDF 167 (349)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L 167 (349)
|++++|.+....+..+.++++|++|++++|.+...++. .+..+++|++|++++|.+.... +..+ ++++.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~L~~N~l~~~~----~~~l-~~L~~L 197 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-----TFQATTSLQNLQLSSNRLTHVD----LSLI-PSLFHA 197 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-----TTTTCTTCCEEECTTSCCSBCC----GGGC-TTCSEE
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-----hhhcCCcCcEEECcCCCCCCcC----hhhh-hhhhhh
Confidence 99999999876666678999999999999988776654 4778899999999999887542 2222 488999
Q ss_pred eecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccC
Q 038106 168 KMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLF 247 (349)
Q Consensus 168 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 247 (349)
++++|.+.+ +...++|+.|++++|.+..... . ..++|+.|++++|.+++ +..+..+++|+.|++++|.+.
T Consensus 198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp ECCSSCCSE-----EECCTTCSEEECCSSCCCEEEC-S--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred hcccCcccc-----ccCCchhheeeccCCccccccc-c--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 999987763 3455689999999998873322 2 23689999999999885 367889999999999999988
Q ss_pred CCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCccccc
Q 038106 248 GSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGG 327 (349)
Q Consensus 248 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 327 (349)
...+..+..+++|+.|++++|.+..++..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.+. .+..
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~---~~~~ 343 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL---KLST 343 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC---CCCT
T ss_pred CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc---Chhh
Confidence 777888999999999999999999988777889999999999999986 677788899999999999998754 2677
Q ss_pred CCCCceEecCCccccC
Q 038106 328 LKNLEYLFLGYNRLQG 343 (349)
Q Consensus 328 ~~~L~~l~l~~~~~~~ 343 (349)
+++|+.|++++|++.+
T Consensus 344 ~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDC 359 (597)
T ss_dssp TCCCSEEECCSSCEEH
T ss_pred cCCCCEEEeeCCCCCC
Confidence 8999999999999764
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-34 Score=265.20 Aligned_cols=339 Identities=22% Similarity=0.264 Sum_probs=195.0
Q ss_pred ChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCC-ccchhhcc
Q 038106 3 PPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSG-TIPRFIFN 81 (349)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~ 81 (349)
|.+|+++++|++|++++|++.+..+..|..+++|++|++++|.+....+..+. .+++|++|++++|.+.. ..+..+.+
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT-TCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc-cCCCCcEEECCCCcccccchhhhhhc
Confidence 45677788888888888877766667777888888888888877554444343 77788888888777664 23455666
Q ss_pred CCCceEEEccCCc-ccccccccccCCCCCCEEEccCCcccCCCccc-hhcc------------------cccCCCCCcEE
Q 038106 82 ASKLSILEFSKNS-FSGFIPNTFGNLRNLQKLRLYDNYLTSSTPEL-SFLS------------------SLSNCKSLTHI 141 (349)
Q Consensus 82 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~------------------~l~~~~~L~~L 141 (349)
+++|++|++++|. +....+..+.++++|++|++++|.+....+.. .... .+..+++|+.|
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEE
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEE
Confidence 7777777777766 33333345666666666666666554321110 0000 01224556666
Q ss_pred eCCCCccccccC-CccccC-------------------------------------------------------------
Q 038106 142 GLSNNPLDCILP-KTSIGN------------------------------------------------------------- 159 (349)
Q Consensus 142 ~l~~~~~~~~~~-~~~~~~------------------------------------------------------------- 159 (349)
++++|.+..... ...+..
T Consensus 202 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (549)
T 2z81_A 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281 (549)
T ss_dssp EEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT
T ss_pred EccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhc
Confidence 665555443100 000000
Q ss_pred --------------------------cccccCeeeecCcccccCcchhc-cCCCCCCEEEcCCccCCCccc---hhcccc
Q 038106 160 --------------------------LSHSLEDFKMHNCNVSGGIPEEI-SNLTNLTTIDLGGNMLNGSIP---ITLSKL 209 (349)
Q Consensus 160 --------------------------~~~~l~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~---~~l~~~ 209 (349)
...+++.++++++.+. .+|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred ccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 0113344444444433 222222 356667777777666654332 224455
Q ss_pred CCCCeeecCCCcCCCCCc--hhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCccc----------
Q 038106 210 QKLQGLRFEDNKLEGSIP--DSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTF---------- 277 (349)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------- 277 (349)
++|+.|++++|.+++..+ ..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+..++..+
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls 439 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS 439 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECC
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECC
Confidence 666777777666653321 34566666777777776665 34445555666666666666655443221
Q ss_pred --------ccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCC
Q 038106 278 --------WNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346 (349)
Q Consensus 278 --------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p 346 (349)
..+++|++|++++|.+.. ++. ...+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|
T Consensus 440 ~N~l~~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 440 NNNLDSFSLFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCChhhhcccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 245666667777666664 332 3456677777777777776666666777777777777777665443
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=270.55 Aligned_cols=325 Identities=22% Similarity=0.234 Sum_probs=245.7
Q ss_pred ccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceE
Q 038106 8 NLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSI 87 (349)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 87 (349)
-.+++++|++++|.+++..+..|..+++|++|++++|......+...+..+++|++|++++|.+....|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 45789999999999988888999999999999999996545553333458999999999999998777899999999999
Q ss_pred EEccCCccccccccc--ccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCc-cccc
Q 038106 88 LEFSKNSFSGFIPNT--FGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNL-SHSL 164 (349)
Q Consensus 88 L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~l 164 (349)
|++++|.+.+..+.. +.++++|++|++++|.+...... ..+.++++|++|++++|.+....+. .+..+ ..++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~----~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L 176 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH----PSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTL 176 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC----GGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSS
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc----hhHhhCCCCCEEECCCCcCCeeCHH-HcccccCCcc
Confidence 999999988655444 88999999999999998776532 2478899999999999988765443 22222 1478
Q ss_pred CeeeecCcccccCcchhccCCCC------CCEEEcCCccCCCccchhccc------------------------------
Q 038106 165 EDFKMHNCNVSGGIPEEISNLTN------LTTIDLGGNMLNGSIPITLSK------------------------------ 208 (349)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~l~~------------------------------ 208 (349)
+.|++++|.+....+..+..+++ |++|++++|.+....+..+..
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 89999999888766665555554 899999888665433322221
Q ss_pred --------cCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcC-Cccccc
Q 038106 209 --------LQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWN 279 (349)
Q Consensus 209 --------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~ 279 (349)
.++++.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..+ +..+..
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence 25677777777777766666777777888888888777666666677777888888888877764 556777
Q ss_pred CCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCcccc
Q 038106 280 LNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 342 (349)
Q Consensus 280 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~ 342 (349)
+++|++|++++|.+....+..+..+++|+.|++++|.+.+ +..+++|+.+++++|+++
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV 394 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc
Confidence 7788888888887777556667777788888888777653 222566666666666665
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.4e-32 Score=244.97 Aligned_cols=314 Identities=27% Similarity=0.391 Sum_probs=249.9
Q ss_pred hccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCce
Q 038106 7 GNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLS 86 (349)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 86 (349)
.++++++.|+++++.+. .++. +..+++|++|++++|.+....+ ...+++|++|++++|.+....+ +.++++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hHhccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 45789999999999886 4553 7889999999999999855544 3589999999999999885544 88999999
Q ss_pred EEEccCCcccccccccccCCCCCCEEEccCCcccCCCccch--------------hcccccCCCCCcEEeCCCCcccccc
Q 038106 87 ILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELS--------------FLSSLSNCKSLTHIGLSNNPLDCIL 152 (349)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------------~~~~l~~~~~L~~L~l~~~~~~~~~ 152 (349)
+|++++|.+.... .+.++++|++|++++|.+...+.... ....+..+++|+.|++++|.+....
T Consensus 116 ~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (466)
T 1o6v_A 116 GLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 193 (466)
T ss_dssp EEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred EEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh
Confidence 9999999988643 38899999999999998776532100 0112556778888888888776432
Q ss_pred CCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhcc
Q 038106 153 PKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICR 232 (349)
Q Consensus 153 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 232 (349)
.+..+ ++++.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..
T Consensus 194 ---~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 194 ---VLAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp ---GGGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred ---hhccC-CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 23333 478889998888876544 66788899999998888743 357788899999999998875443 788
Q ss_pred CCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEc
Q 038106 233 LTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDF 312 (349)
Q Consensus 233 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 312 (349)
+++|+.|++++|.+....+ +..+++|++|++++|.+..++. +..+++|++|++++|.+.+..+ +..+++|+.|++
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 8999999999998875433 7788999999999999988764 6788999999999999987544 678899999999
Q ss_pred cCCeeeeccCcccccCCCCceEecCCccccCCCC
Q 038106 313 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346 (349)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p 346 (349)
++|.+.+. ..+..+++|+.|++++|++++..|
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 99998854 468899999999999999987665
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8e-33 Score=251.77 Aligned_cols=326 Identities=23% Similarity=0.276 Sum_probs=252.1
Q ss_pred CChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhcc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (349)
+|+.+. ++|++|++++|++.+..+..+..+++|++|++++|.+....+..+. .+++|++|++++|.+. ..|.. .
T Consensus 15 ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFK-FNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGT-TCTTCCEEECCSSCCC-EEECC--C
T ss_pred cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhh-cccCCCEEecCCCcee-ecCcc--c
Confidence 565555 8999999999999877778999999999999999999766666654 8999999999999998 55655 7
Q ss_pred CCCceEEEccCCcccc-cccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCC--cEEeCCCCcc--ccccCCcc
Q 038106 82 ASKLSILEFSKNSFSG-FIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSL--THIGLSNNPL--DCILPKTS 156 (349)
Q Consensus 82 ~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~ 156 (349)
+++|++|++++|.+.. ..+..++++++|++|++++|.+... .+..+++| +.|++++|.+ ....+. .
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--------~~~~l~~L~L~~L~l~~n~l~~~~~~~~-~ 159 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--------SVLPIAHLNISKVLLVLGETYGEKEDPE-G 159 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--------GGGGGTTSCEEEEEEEECTTTTSSCCTT-T
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh--------hccccccceeeEEEeecccccccccccc-c
Confidence 8999999999999986 3568899999999999999987641 35566777 9999999877 322221 1
Q ss_pred ccCc----------------------------------------------------------------------------
Q 038106 157 IGNL---------------------------------------------------------------------------- 160 (349)
Q Consensus 157 ~~~~---------------------------------------------------------------------------- 160 (349)
+..+
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence 1110
Q ss_pred ------ccccCeeeecCcccccCcchhc-----cCCCCCCEEEcCCccC--------------------------CCccc
Q 038106 161 ------SHSLEDFKMHNCNVSGGIPEEI-----SNLTNLTTIDLGGNML--------------------------NGSIP 203 (349)
Q Consensus 161 ------~~~l~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~--------------------------~~~~~ 203 (349)
..++++|++++|.+.+.+|..+ ..+++|+.++++++.+ .+..
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~- 318 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML- 318 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc-
Confidence 0146666666666665555544 4444444444444433 2111
Q ss_pred hhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCC--CChhhhhCCCCCceEecCCccCCc-CCcc-ccc
Q 038106 204 ITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFG--SIPACFSNLASLRILSLGSNELTS-IPLT-FWN 279 (349)
Q Consensus 204 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~~-~~~ 279 (349)
.+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+.. ++.. +..
T Consensus 319 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 319 -CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp -CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred -chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 11567889999999999988788888999999999999998875 344668889999999999999988 7664 677
Q ss_pred CCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCCCC
Q 038106 280 LNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS 348 (349)
Q Consensus 280 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~ 348 (349)
+++|++|++++|.+.+..+..+. ++|+.|++++|.+. .+|..+..+++|++|++++|+++ .+|.+
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence 89999999999998765554443 79999999999998 78887889999999999999998 46654
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-32 Score=240.23 Aligned_cols=294 Identities=21% Similarity=0.251 Sum_probs=250.5
Q ss_pred CChh-hhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhc
Q 038106 2 IPPE-IGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIF 80 (349)
Q Consensus 2 ~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 80 (349)
+|+. +.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+....+..+.
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~~~~ 138 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDLSSLPRGIFH 138 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh-cCCCCCCEEECCCCccCcCCHHHhc
Confidence 3443 7899999999999999987777889999999999999999866655544 4899999999999999855445568
Q ss_pred cCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCc
Q 038106 81 NASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNL 160 (349)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 160 (349)
.+++|++|++++|.+....+..+..+++|++|++++|.+...+ +..+++|+.++++++.+.... .
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~l~~L~~L~l~~n~l~~~~-------~ 203 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--------LSLIPSLFHANVSYNLLSTLA-------I 203 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--------GGGCTTCSEEECCSSCCSEEE-------C
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--------cccccccceeecccccccccC-------C
Confidence 8999999999999998777788999999999999999887653 556789999999999876431 2
Q ss_pred ccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEE
Q 038106 161 SHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELE 240 (349)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 240 (349)
+..++.|+++++.+..... ...++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 204 ~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp CSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred CCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 3589999999999875422 2357899999999999853 5688899999999999999987788899999999999
Q ss_pred cCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeec
Q 038106 241 LGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGV 320 (349)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 320 (349)
+++|.+.. .+..+..+++|++|++++|.+..++..+..+++|++|++++|.+.... +..+++|+.|++++|.+...
T Consensus 279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence 99998864 345556789999999999999999888888999999999999998742 66789999999999998763
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.5e-32 Score=250.52 Aligned_cols=320 Identities=23% Similarity=0.215 Sum_probs=242.0
Q ss_pred cccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEE
Q 038106 9 LRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSIL 88 (349)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 88 (349)
+...+++++++++++ .+|..+. ++|++|++++|.+....+..+. .+++|++|++++|.+....+..|..+++|++|
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDIS-FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhc-cCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 445589999999987 4665443 7999999999999665555554 89999999999999997778889999999999
Q ss_pred EccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCccccc--Ce
Q 038106 89 EFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSL--ED 166 (349)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l--~~ 166 (349)
++++|.+.. ++.. .+++|++|++++|.+...+.. ..+..+++|++|++++|.+... .+..+ .++ +.
T Consensus 106 ~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p----~~~~~l~~L~~L~L~~n~l~~~----~~~~l-~~L~L~~ 173 (562)
T 3a79_B 106 DVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVC----KEFGNLTKLTFLGLSAAKFRQL----DLLPV-AHLHLSC 173 (562)
T ss_dssp ECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCC----GGGGGCTTCCEEEEECSBCCTT----TTGGG-TTSCEEE
T ss_pred ECCCCcCCc-cCcc--ccccCCEEECCCCCccccCch----HhhcccCcccEEecCCCccccC----chhhh-hhceeeE
Confidence 999999984 4444 799999999999998775421 2477889999999999988642 22222 244 88
Q ss_pred eeecCccc--ccCcchhccCC-----------------------------------------------------------
Q 038106 167 FKMHNCNV--SGGIPEEISNL----------------------------------------------------------- 185 (349)
Q Consensus 167 L~l~~~~~--~~~~~~~l~~~----------------------------------------------------------- 185 (349)
+++++|.+ .+..+..+..+
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 88888877 43333322221
Q ss_pred ----------------------CCCCEEEcCCccCCCccchhc-------------------------------------
Q 038106 186 ----------------------TNLTTIDLGGNMLNGSIPITL------------------------------------- 206 (349)
Q Consensus 186 ----------------------~~L~~L~l~~~~~~~~~~~~l------------------------------------- 206 (349)
++|++|++++|.+.+..+..+
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence 156666666666553333222
Q ss_pred ----------------cccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCC--hhhhhCCCCCceEecCCc
Q 038106 207 ----------------SKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSI--PACFSNLASLRILSLGSN 268 (349)
Q Consensus 207 ----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~ 268 (349)
..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.... +..+..+++|++|++++|
T Consensus 334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred eEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 45678888888888888777788888889999999988876432 355778888999999999
Q ss_pred cCCc-CCc-ccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCC
Q 038106 269 ELTS-IPL-TFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346 (349)
Q Consensus 269 ~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p 346 (349)
.+.. ++. .+..+++|++|++++|.+.+..+..+. ++|+.|++++|.+. .+|..+..+++|++|++++|+++ .+|
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~ 489 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP 489 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCC
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCC
Confidence 8887 665 366788899999999988764443332 68999999999988 67777779999999999999998 466
Q ss_pred CC
Q 038106 347 DS 348 (349)
Q Consensus 347 ~~ 348 (349)
.+
T Consensus 490 ~~ 491 (562)
T 3a79_B 490 DG 491 (562)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.8e-31 Score=228.47 Aligned_cols=289 Identities=27% Similarity=0.393 Sum_probs=242.7
Q ss_pred hccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCC
Q 038106 30 IFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNL 109 (349)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 109 (349)
+..+++|++|+++++.+.. .+. + ..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~~-~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQG-I-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCcccc-chh-h-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 5578999999999998844 333 3 479999999999999885433 88999999999999998853 468999999
Q ss_pred CEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCC
Q 038106 110 QKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLT 189 (349)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~ 189 (349)
++|++++|.+...+ .+..+++|+.|++++|......+. +..+ +++++|++++|.+....+ +..+++|+
T Consensus 113 ~~L~l~~n~i~~~~-------~~~~l~~L~~L~l~~n~~~~~~~~--~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 113 RELYLNEDNISDIS-------PLANLTKMYSLNLGANHNLSDLSP--LSNM-TGLNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp SEEECTTSCCCCCG-------GGTTCTTCCEEECTTCTTCCCCGG--GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred CEEECcCCcccCch-------hhccCCceeEEECCCCCCcccccc--hhhC-CCCcEEEecCCCcCCchh--hccCCCCC
Confidence 99999999887654 266889999999999965443332 3333 489999999999875544 78899999
Q ss_pred EEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCcc
Q 038106 190 TIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNE 269 (349)
Q Consensus 190 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 269 (349)
+|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+....+ +..+++|++|++++|.
T Consensus 181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence 99999999874433 7788999999999999885443 7889999999999999875433 7889999999999999
Q ss_pred CCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCC
Q 038106 270 LTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346 (349)
Q Consensus 270 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p 346 (349)
+..++ .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|
T Consensus 255 l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 255 ISDIN-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCCh-hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 99874 578899999999999999874 457889999999999999998888889999999999999999987655
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.8e-32 Score=248.61 Aligned_cols=290 Identities=21% Similarity=0.242 Sum_probs=250.2
Q ss_pred hhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCC
Q 038106 5 EIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASK 84 (349)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (349)
.+.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+ ..+++|++|++++|.+....+..|..+++
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDLSSLPRGIFHNTPK 148 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH-cCCCCCCEEEeeCCCCCCCCHHHhccCCC
Confidence 37889999999999999988788899999999999999999866555544 48999999999999998555556789999
Q ss_pred ceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCccccc
Q 038106 85 LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSL 164 (349)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 164 (349)
|++|++++|.+....+..+..+++|++|++++|.+...+ +..+++|+.|++++|.+.... .+.++
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~l~~L~~L~l~~n~l~~l~-------~~~~L 213 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--------LSLIPSLFHANVSYNLLSTLA-------IPIAV 213 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--------GGGCTTCSEEECCSSCCSEEE-------CCTTC
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--------hhhhhhhhhhhcccCcccccc-------CCchh
Confidence 999999999999888888999999999999999887653 456789999999999886432 24589
Q ss_pred CeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCC
Q 038106 165 EDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGN 244 (349)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 244 (349)
+.|++++|.+....+. ..++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 214 ~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 214 EELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288 (597)
T ss_dssp SEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred heeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence 9999999998754332 23689999999999985 357888999999999999999888889999999999999999
Q ss_pred ccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee
Q 038106 245 KLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
.+.. .+..+..+++|+.|++++|.+..+|..+..+++|++|++++|.+... .+..+++|+.|++++|.+.+
T Consensus 289 ~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 289 RLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEH
T ss_pred CCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCCC
Confidence 9874 45556678999999999999999998888999999999999999874 26678999999999999875
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.9e-31 Score=226.18 Aligned_cols=288 Identities=23% Similarity=0.286 Sum_probs=215.8
Q ss_pred ccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEc
Q 038106 35 TLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRL 114 (349)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 114 (349)
+++.++++++.+. ..|..+ .++|++|++++|.+....+..+.++++|++|++++|.+....+..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777777777763 333332 367788888887777555566777788888888887777666777777888888888
Q ss_pred cCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCccccc--CcchhccCCCCCCEEE
Q 038106 115 YDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSG--GIPEEISNLTNLTTID 192 (349)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~l~~~~~L~~L~ 192 (349)
++|.+...+.. + .++|++|++++|.+....+ ..+..+ ++++.|++++|.+.. ..+..+..+ +|++|+
T Consensus 110 ~~n~l~~l~~~------~--~~~L~~L~l~~n~i~~~~~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 110 SKNHLVEIPPN------L--PSSLVELRIHDNRIRKVPK-GVFSGL-RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CSSCCCSCCSS------C--CTTCCEEECCSSCCCCCCS-GGGSSC-SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCCcCCccCcc------c--cccCCEEECCCCccCccCH-hHhCCC-ccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 88777665543 1 1677888888877764322 233333 377888888877753 445556666 889999
Q ss_pred cCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCc
Q 038106 193 LGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTS 272 (349)
Q Consensus 193 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 272 (349)
+++|.+.+ .+..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..
T Consensus 179 l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 179 ISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp CCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred CcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence 99988874 333332 789999999999987777788899999999999999887777788899999999999999999
Q ss_pred CCcccccCCCccEEEecCCcCCCCCCccccc------cccccEEEccCCeee--eccCcccccCCCCceEecCCcc
Q 038106 273 IPLTFWNLNNILYLNFSSNFFTAPLPLEIGN------LKVLVGMDFSMNNFS--GVIPTEIGGLKNLEYLFLGYNR 340 (349)
Q Consensus 273 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~l~l~~~~ 340 (349)
+|..+..+++|++|++++|.+....+..+.. .+.|+.|++++|.+. +..+.++..+++|+.+++++|+
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9988899999999999999998865555543 467899999999876 4666788889999999999885
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=1.1e-30 Score=243.38 Aligned_cols=133 Identities=24% Similarity=0.332 Sum_probs=86.1
Q ss_pred CCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccC-CCChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEe
Q 038106 211 KLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLF-GSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNF 288 (349)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l 288 (349)
+++.++++.|.+....+..+..++.++.|++++|... ...+..+..+++|++|++++|+++.+ +..+..+++|++|++
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 3444444444444444445555666667777666532 23345566677777777777777764 556677777777777
Q ss_pred cCCcCCCCCCccccccccccEEEccCCeeeeccCcccccC-CCCceEecCCccccC
Q 038106 289 SSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGL-KNLEYLFLGYNRLQG 343 (349)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~l~l~~~~~~~ 343 (349)
++|.+....+..+..+++|+.|++++|++.+..+..+..+ ++|+.|+|++||+.+
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 7777777666667777777777777777776666677666 467777777777654
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=1.3e-30 Score=243.07 Aligned_cols=343 Identities=22% Similarity=0.221 Sum_probs=241.8
Q ss_pred hhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCC
Q 038106 4 PEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNAS 83 (349)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 83 (349)
.+|+++++|++|++++|++++..+.+|.++++|++|+|++|.+....+. .+..+++|++|++++|.+....+..|++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~-~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG-GGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH-HhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 3577777778888877777765666777777778888877777443333 334777777777777777755555577777
Q ss_pred CceEEEccCCccccc-ccccccCCCCCCEEEccCCcccCCCccc-hhc--------------------------------
Q 038106 84 KLSILEFSKNSFSGF-IPNTFGNLRNLQKLRLYDNYLTSSTPEL-SFL-------------------------------- 129 (349)
Q Consensus 84 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~-------------------------------- 129 (349)
+|++|++++|.+... .+..+..+++|++|++++|.+....+.. ...
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~ 228 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence 777777777776542 3556667777777777776543321110 000
Q ss_pred --------------------------------------------------------------------------------
Q 038106 130 -------------------------------------------------------------------------------- 129 (349)
Q Consensus 130 -------------------------------------------------------------------------------- 129 (349)
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence
Q ss_pred -------------ccccCCCCCcEEeCCCCccccccCCc------------------cccCcccccCeeeecCccccc--
Q 038106 130 -------------SSLSNCKSLTHIGLSNNPLDCILPKT------------------SIGNLSHSLEDFKMHNCNVSG-- 176 (349)
Q Consensus 130 -------------~~l~~~~~L~~L~l~~~~~~~~~~~~------------------~~~~~~~~l~~L~l~~~~~~~-- 176 (349)
..+.....++.|++.++.+....... .... .++++.++++.+.+..
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~-l~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCB-CTTCCEEECCSSCCBEEE
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccc-ccccccchhhcccccccc
Confidence 00001112222222222221110000 0001 2368889998887753
Q ss_pred CcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCC-CchhhccCCcccEEEcCCCccCCCChhhhh
Q 038106 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS-IPDSICRLTELYELELGGNKLFGSIPACFS 255 (349)
Q Consensus 177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 255 (349)
..+.....+.+++.+++..+... .....+..+++++.+++.++..... ....+..+++++.++++.|.+....+..+.
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred ccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 33455667889999999888765 3444567889999999998865533 334577889999999999988777777788
Q ss_pred CCCCCceEecCCccCCc--CCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCce
Q 038106 256 NLASLRILSLGSNELTS--IPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEY 333 (349)
Q Consensus 256 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 333 (349)
.+++++.|++++|.+.. .+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 89999999999997544 6778889999999999999999977888999999999999999999877888999999999
Q ss_pred EecCCccccCCCCCCC
Q 038106 334 LFLGYNRLQGSIPDSF 349 (349)
Q Consensus 334 l~l~~~~~~~~~p~~~ 349 (349)
|+|++|++++..|+.|
T Consensus 547 L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQEL 562 (635)
T ss_dssp EECTTSCCCBCCSSCT
T ss_pred EECCCCcCCCCCHHHH
Confidence 9999999998877654
No 38
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=1.6e-34 Score=259.16 Aligned_cols=339 Identities=19% Similarity=0.159 Sum_probs=258.3
Q ss_pred hhhccccccEEecCCccccC----ccchhhccccccceeeccCceeccccCccccccCC----cccEEeccCCcCCC---
Q 038106 5 EIGNLRNLERLGLGLNKLIG----TVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLP----NLERLLLWGNNFSG--- 73 (349)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~--- 73 (349)
.+..+++|++|++++|++.+ .++..+..+++|++|++++|.+.+..+..+...++ +|++|++++|.+.+
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 37789999999999999874 45677888899999999999986655555554566 79999999999885
Q ss_pred -ccchhhccCCCceEEEccCCcccccccccc-----cCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCc
Q 038106 74 -TIPRFIFNASKLSILEFSKNSFSGFIPNTF-----GNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNP 147 (349)
Q Consensus 74 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 147 (349)
..+..+..+++|++|++++|.++...+..+ ...++|++|++++|.+...... .+...+..+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-PLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH-HHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH-HHHHHHhhCCCCCEEECcCCC
Confidence 346778889999999999998865433322 2356899999999987654321 223456678999999999998
Q ss_pred cccccCCccccC---cccccCeeeecCcccccC----cchhccCCCCCCEEEcCCccCCCccch-----hccccCCCCee
Q 038106 148 LDCILPKTSIGN---LSHSLEDFKMHNCNVSGG----IPEEISNLTNLTTIDLGGNMLNGSIPI-----TLSKLQKLQGL 215 (349)
Q Consensus 148 ~~~~~~~~~~~~---~~~~l~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L 215 (349)
+........... ..++++.|++++|.+++. ++..+..+++|++|++++|.+.+.... .+..+++|+.|
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 764422211111 123899999999998864 356677889999999999988754322 22247899999
Q ss_pred ecCCCcCCCC----CchhhccCCcccEEEcCCCccCCCChhhhhC-----CCCCceEecCCccCCc-----CCcccccCC
Q 038106 216 RFEDNKLEGS----IPDSICRLTELYELELGGNKLFGSIPACFSN-----LASLRILSLGSNELTS-----IPLTFWNLN 281 (349)
Q Consensus 216 ~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~-----~~~~~~~~~ 281 (349)
++++|.++.. .+..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.++. ++..+..++
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 9999988753 4566777999999999999876544444432 3699999999999876 355677789
Q ss_pred CccEEEecCCcCCCCCCccccc-----cccccEEEccCCeeee----ccCcccccCCCCceEecCCccccCC
Q 038106 282 NILYLNFSSNFFTAPLPLEIGN-----LKVLVGMDFSMNNFSG----VIPTEIGGLKNLEYLFLGYNRLQGS 344 (349)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~l~l~~~~~~~~ 344 (349)
+|++|++++|.+.+..+..+.. .++|+.|++++|.+.+ .++..+..+++|++|++++|++++.
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 9999999999987754444432 6799999999999986 6777888899999999999998653
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=4.1e-30 Score=220.33 Aligned_cols=289 Identities=19% Similarity=0.206 Sum_probs=221.4
Q ss_pred ccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEc
Q 038106 35 TLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRL 114 (349)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 114 (349)
+++.++++++.+. ..|.. ..+++++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKD---LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCS---CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCcc---CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 6778888877763 33332 2367888888888877655556778888888888888887666777888888888888
Q ss_pred cCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCccccc--CcchhccCCCCCCEEE
Q 038106 115 YDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSG--GIPEEISNLTNLTTID 192 (349)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~l~~~~~L~~L~ 192 (349)
++|.+...+.. + .++|++|++++|.+....+. .+..+ ++++.|++++|.+.. ..+..+..+++|++|+
T Consensus 108 s~n~l~~l~~~------~--~~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 108 SKNQLKELPEK------M--PKTLQELRVHENEITKVRKS-VFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CSSCCSBCCSS------C--CTTCCEEECCSSCCCBBCHH-HHTTC-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCcCCccChh------h--cccccEEECCCCcccccCHh-HhcCC-ccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 88877765533 1 26788888888877644322 23333 378888888887753 4456688899999999
Q ss_pred cCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCc
Q 038106 193 LGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTS 272 (349)
Q Consensus 193 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 272 (349)
+++|.+.+ .+..+. ++|+.|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..
T Consensus 178 l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 254 (330)
T 1xku_A 178 IADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254 (330)
T ss_dssp CCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS
T ss_pred CCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc
Confidence 99998874 333332 789999999999987778889999999999999999887666678889999999999999999
Q ss_pred CCcccccCCCccEEEecCCcCCCCCCccccc------cccccEEEccCCeeee--ccCcccccCCCCceEecCCcc
Q 038106 273 IPLTFWNLNNILYLNFSSNFFTAPLPLEIGN------LKVLVGMDFSMNNFSG--VIPTEIGGLKNLEYLFLGYNR 340 (349)
Q Consensus 273 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~l~l~~~~ 340 (349)
+|..+..+++|++|++++|.+.......+.. .+.++.+++++|.+.. ..|..+..+++++.+++++|+
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9988999999999999999998865555532 4788999999998754 455677888999999999885
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.8e-30 Score=229.05 Aligned_cols=307 Identities=17% Similarity=0.128 Sum_probs=189.3
Q ss_pred hhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCC
Q 038106 4 PEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNAS 83 (349)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 83 (349)
..++++++|++|++++|.+.+. | .+..+++|++|++++|.+.+. + ...+++|++|++++|.+... + +..++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 3577889999999999988754 4 578889999999999988553 3 34788999999999888753 2 77788
Q ss_pred CceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccc
Q 038106 84 KLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHS 163 (349)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 163 (349)
+|++|++++|.+... + ++.+++|++|++++|.+...+ +..+++|+.|++++|......+ +..+ ++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~--------l~~l~~L~~L~l~~n~~~~~~~---~~~l-~~ 171 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEID--------VSHNTQLTELDCHLNKKITKLD---VTPQ-TQ 171 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCC--------CTTCTTCCEEECTTCSCCCCCC---CTTC-TT
T ss_pred cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceec--------cccCCcCCEEECCCCCcccccc---cccC-Cc
Confidence 899999999888753 2 778888999988888877642 4556667777777664322221 2222 35
Q ss_pred cCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCC
Q 038106 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGG 243 (349)
Q Consensus 164 l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 243 (349)
++.|++++|.+.+. + +..+++|++|++++|.+.+. .+..+++|+.|++++|.+++ .| +..+++|+.|++++
T Consensus 172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 66666666666542 2 45556666666666665533 24455566666666666554 23 45555666666666
Q ss_pred CccCCCChhh-----------------------------hhCCCCCceEecCCccCCc-CCc--------ccccCCCccE
Q 038106 244 NKLFGSIPAC-----------------------------FSNLASLRILSLGSNELTS-IPL--------TFWNLNNILY 285 (349)
Q Consensus 244 ~~~~~~~~~~-----------------------------~~~~~~L~~L~l~~~~~~~-~~~--------~~~~~~~L~~ 285 (349)
|.+....+.. +..+++|+.|++++|.... ++. .+..+++|++
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 5554332211 1233455555555553211 110 2344566666
Q ss_pred EEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccc-------------cCCCCceEecCCccccCCCCCC
Q 038106 286 LNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIG-------------GLKNLEYLFLGYNRLQGSIPDS 348 (349)
Q Consensus 286 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-------------~~~~L~~l~l~~~~~~~~~p~~ 348 (349)
|++++|.+.+. .+..+++|+.|++++|++.+. + .+. .+..|+.+++++|.++|.+|.+
T Consensus 323 L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l-~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 323 LYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF-S-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC-T-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTT
T ss_pred EECCCCccccc---ccccCCcCcEEECCCCCCCCc-c-ccccccccCCcEEecceeeecCccccccCcEEEEcChh
Confidence 66666666652 255666666666666666541 1 111 1234556666666666666654
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.6e-29 Score=224.98 Aligned_cols=301 Identities=17% Similarity=0.142 Sum_probs=192.7
Q ss_pred hhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCC
Q 038106 5 EIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASK 84 (349)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (349)
.++.+++|++|++++|++++. + +..+++|++|++++|.+.+. + ...+++|++|++++|.+... + +..+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~ 128 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D---VTPLTKLTYLNCDTNKLTKL-D--VSQNPL 128 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C---CTTCTTCCEEECCSSCCSCC-C--CTTCTT
T ss_pred hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e---cCCCCcCCEEECCCCcCCee-c--CCCCCc
Confidence 688999999999999998754 3 77889999999999988553 2 34789999999999988753 3 777888
Q ss_pred ceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCccccc
Q 038106 85 LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSL 164 (349)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 164 (349)
|++|++++|.+.+. .++.+++|++|++++|...... .+..+++|+.|++++|.+... + +..+ +++
T Consensus 129 L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n~l~~l-~---l~~l-~~L 193 (457)
T 3bz5_A 129 LTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-------DVTPQTQLTTLDCSFNKITEL-D---VSQN-KLL 193 (457)
T ss_dssp CCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-------CCTTCTTCCEEECCSSCCCCC-C---CTTC-TTC
T ss_pred CCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-------ccccCCcCCEEECCCCcccee-c---cccC-CCC
Confidence 99999998888753 2566777777777776322211 144455666666666655432 1 2222 245
Q ss_pred CeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchh---------------
Q 038106 165 EDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDS--------------- 229 (349)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--------------- 229 (349)
+.|++++|.+.+. .+..+++|++|++++|.+.+ .+ +..+++|+.|++++|.+++..+..
T Consensus 194 ~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~ 267 (457)
T 3bz5_A 194 NRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLL 267 (457)
T ss_dssp CEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred CEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCC
Confidence 5555555544432 13444444444444444443 11 333444444444444433221111
Q ss_pred --------------hccCCcccEEEcCCCccCCCChh--------hhhCCCCCceEecCCccCCcCCcccccCCCccEEE
Q 038106 230 --------------ICRLTELYELELGGNKLFGSIPA--------CFSNLASLRILSLGSNELTSIPLTFWNLNNILYLN 287 (349)
Q Consensus 230 --------------~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 287 (349)
+..+++|+.|++++|......+. .++.+++|++|++++|.++.++ +..+++|+.|+
T Consensus 268 ~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~ 345 (457)
T 3bz5_A 268 EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLS 345 (457)
T ss_dssp CCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEE
T ss_pred EEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEE
Confidence 23457777777777754322221 2566789999999999999974 78899999999
Q ss_pred ecCCcCCCCCC-ccc----------cccccccEEEccCCeeeeccCcccccC-CCCceEecCC
Q 038106 288 FSSNFFTAPLP-LEI----------GNLKVLVGMDFSMNNFSGVIPTEIGGL-KNLEYLFLGY 338 (349)
Q Consensus 288 l~~~~~~~~~~-~~~----------~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~l~l~~ 338 (349)
+++|.+.+... ..+ ..+..|..+++++|.+++.+|..+... ..+.....+.
T Consensus 346 l~~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~ 408 (457)
T 3bz5_A 346 CVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408 (457)
T ss_dssp CCSSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESS
T ss_pred CCCCCCCCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHhcccCceeeccCCC
Confidence 99999886211 001 123567888999999999988766443 4555554443
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.7e-30 Score=219.34 Aligned_cols=250 Identities=27% Similarity=0.393 Sum_probs=194.3
Q ss_pred CcccEEeccCCcCCC--ccchhhccCCCceEEEccC-CcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCC
Q 038106 59 PNLERLLLWGNNFSG--TIPRFIFNASKLSILEFSK-NSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNC 135 (349)
Q Consensus 59 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 135 (349)
.+++.|+++++.+.+ ..|..+.++++|++|++++ +.+.+..+..+.++++|++|++++|.+....+. .+..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-----~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-----FLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-----GGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-----HHhCC
Confidence 467777777777776 5677777777788887774 666666677777777777777777766532222 35556
Q ss_pred CCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccC-CCCe
Q 038106 136 KSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQ-KLQG 214 (349)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~ 214 (349)
++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+..++ +|+.
T Consensus 125 ~~L~~L~Ls~N~l~~--------------------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 125 KTLVTLDFSYNALSG--------------------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp TTCCEEECCSSEEES--------------------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred CCCCEEeCCCCccCC--------------------------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 666666666665542 3445566777888888888887766676777776 7888
Q ss_pred eecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCC
Q 038106 215 LRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFT 294 (349)
Q Consensus 215 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 294 (349)
|++++|.+.+..+..+..++ |+.|++++|.+....+..+..+++|+.|++++|.+...+..+..+++|++|++++|.+.
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc
Confidence 88888888777777777776 88999998888777778888889999999999988875555778899999999999998
Q ss_pred CCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccc
Q 038106 295 APLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 341 (349)
Q Consensus 295 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 341 (349)
+..+..+..+++|+.|++++|.+.+.+|.. ..+++|+.+++.+|+.
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 778888999999999999999999888876 8889999999999994
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=8.8e-30 Score=226.51 Aligned_cols=314 Identities=26% Similarity=0.319 Sum_probs=158.6
Q ss_pred CChhhhccccccEEecCCccccCccchhhcccccc-------------ceeeccCceeccc-------------------
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTL-------------KSLELQDNSLFGS------------------- 49 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~------------------- 49 (349)
+|++++++++|++|++++|.+.+.+|..+..+.+| ++|+++++.+.+.
T Consensus 26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE 105 (454)
T ss_dssp --------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSS
T ss_pred CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCCEEEccCCcCCc
Confidence 56667777777777777666666666655554432 4455544443221
Q ss_pred cCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccch--
Q 038106 50 ISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELS-- 127 (349)
Q Consensus 50 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-- 127 (349)
.+. .+++|++|++++|.+.. .+. ..++|++|++++|.+.+ ++ .++++++|++|++++|.+...+....
T Consensus 106 lp~----~~~~L~~L~l~~n~l~~-l~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L 175 (454)
T 1jl5_A 106 LPE----LPQSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSL 175 (454)
T ss_dssp CCC----CCTTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred ccc----ccCCCcEEECCCCccCc-ccC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCCcccc
Confidence 111 12344444444444331 111 01466666666666654 33 46666667777776666554332100
Q ss_pred -----------hcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCc
Q 038106 128 -----------FLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGN 196 (349)
Q Consensus 128 -----------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 196 (349)
.+..+..+++|++|++++|.+... ...+.++++|++++|.+. .++. +..+++|++|++++|
T Consensus 176 ~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l------~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 176 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL------PDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC------CCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSS
T ss_pred cEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC------CCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCC
Confidence 001244556666666666655431 112346777777777766 3443 667777888888777
Q ss_pred cCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCC--CChhh-------------hhCC-CCC
Q 038106 197 MLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFG--SIPAC-------------FSNL-ASL 260 (349)
Q Consensus 197 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~-------------~~~~-~~L 260 (349)
.+.+ .+. ..++|+.|++++|.+.+ .+.. +++|+.|++++|.+.. ..+.. +..+ ++|
T Consensus 248 ~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L 319 (454)
T 1jl5_A 248 LLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL 319 (454)
T ss_dssp CCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred cCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcC
Confidence 7763 222 23567777777776653 2221 2556666666665442 11110 1112 366
Q ss_pred ceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee--ccCcccccC----------
Q 038106 261 RILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG--VIPTEIGGL---------- 328 (349)
Q Consensus 261 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~---------- 328 (349)
++|++++|.+..++.. +++|++|++++|.+.. .+. .+++|+.|++++|.+.+ .+|..+..+
T Consensus 320 ~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~ 392 (454)
T 1jl5_A 320 EELNVSNNKLIELPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392 (454)
T ss_dssp CEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------
T ss_pred CEEECCCCcccccccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccc
Confidence 6777777766665543 4677888888887775 333 36778888888888776 566677666
Q ss_pred ---CCCceEecCCccccC--CCCCC
Q 038106 329 ---KNLEYLFLGYNRLQG--SIPDS 348 (349)
Q Consensus 329 ---~~L~~l~l~~~~~~~--~~p~~ 348 (349)
++|+.|++++|++++ .+|.+
T Consensus 393 ~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 393 ELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp -------------------------
T ss_pred cccCcCCEEECCCCcCCccccchhh
Confidence 778888888888876 66654
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.4e-29 Score=211.85 Aligned_cols=290 Identities=22% Similarity=0.296 Sum_probs=231.4
Q ss_pred ccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEE
Q 038106 10 RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89 (349)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 89 (349)
.+++.++++++.+. .+|..+. +.+++|++++|.+....+..+ ..+++|++|++++|.+....+..+..+++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 47899999998876 5555443 689999999999866555444 4899999999999999877788899999999999
Q ss_pred ccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccc-cCCccccCcccccCeee
Q 038106 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCI-LPKTSIGNLSHSLEDFK 168 (349)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~l~~L~ 168 (349)
+++|.+.. .+..+. ++|++|++++|.+...+.. .+..+++|+.|++++|.+... .....+..+ +++++|+
T Consensus 107 Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~ 177 (330)
T 1xku_A 107 LSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKS-----VFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIR 177 (330)
T ss_dssp CCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHH-----HHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEE
T ss_pred CCCCcCCc-cChhhc--ccccEEECCCCcccccCHh-----HhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEE
Confidence 99999884 344433 7999999999988766543 367889999999999988632 222234443 4899999
Q ss_pred ecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCC
Q 038106 169 MHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFG 248 (349)
Q Consensus 169 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 248 (349)
++++.+.. ++..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 178 l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 178 IADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253 (330)
T ss_dssp CCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred CCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence 99999885 33333 279999999999998777788899999999999999998777778899999999999999987
Q ss_pred CChhhhhCCCCCceEecCCccCCcCCcc-cc------cCCCccEEEecCCcCCC--CCCccccccccccEEEccCCe
Q 038106 249 SIPACFSNLASLRILSLGSNELTSIPLT-FW------NLNNILYLNFSSNFFTA--PLPLEIGNLKVLVGMDFSMNN 316 (349)
Q Consensus 249 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~------~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 316 (349)
..+..+..+++|++|++++|.++.++.. +. ..+.++.+++.+|++.. ..+..+..+++++.+++++|+
T Consensus 254 ~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 5677788999999999999999886542 22 24789999999999864 455678888999999999874
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.7e-28 Score=210.40 Aligned_cols=289 Identities=23% Similarity=0.289 Sum_probs=234.7
Q ss_pred ccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEE
Q 038106 10 RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89 (349)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 89 (349)
.+++.++++++.+. .+|..+ .+++++|++++|.+....+..+ ..+++|++|++++|.+....+..+..+++|++|+
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 47999999999886 566544 3689999999999866555555 4899999999999999877788899999999999
Q ss_pred ccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccc-cCCccccCcccccCeee
Q 038106 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCI-LPKTSIGNLSHSLEDFK 168 (349)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~l~~L~ 168 (349)
+++|.+.. ++..+. ++|++|++++|.+...+.. .+..+++|+.|++++|.+... .....+..+ +++.|+
T Consensus 109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~ 178 (332)
T 2ft3_A 109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKG-----VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLR 178 (332)
T ss_dssp CCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSG-----GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCB
T ss_pred CCCCcCCc-cCcccc--ccCCEEECCCCccCccCHh-----HhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEE
Confidence 99999884 444443 8999999999999877654 377899999999999988632 222233333 899999
Q ss_pred ecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCC
Q 038106 169 MHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFG 248 (349)
Q Consensus 169 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 248 (349)
+++|.+.. ++..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 179 l~~n~l~~-l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 179 ISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp CCSSBCSS-CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CcCCCCCc-cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence 99999885 34333 278999999999999777778899999999999999999877778999999999999999987
Q ss_pred CChhhhhCCCCCceEecCCccCCcCCc-cccc------CCCccEEEecCCcCC--CCCCccccccccccEEEccCCe
Q 038106 249 SIPACFSNLASLRILSLGSNELTSIPL-TFWN------LNNILYLNFSSNFFT--APLPLEIGNLKVLVGMDFSMNN 316 (349)
Q Consensus 249 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 316 (349)
..+..+..+++|++|++++|.++.++. .+.. .++|+.|++.+|++. ...+..+..+++|+.+++++|.
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 667778899999999999999988643 2322 467999999999987 4566778889999999999874
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.8e-29 Score=213.05 Aligned_cols=249 Identities=27% Similarity=0.431 Sum_probs=172.9
Q ss_pred cccceeeccCceecc--ccCccccccCCcccEEeccC-CcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCC
Q 038106 34 STLKSLELQDNSLFG--SISSIIDVRLPNLERLLLWG-NNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQ 110 (349)
Q Consensus 34 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 110 (349)
.+++.|+++++.+.+ ..+..+. .+++|++|++++ +.+.+..|..+.++++|++|++++|.+.+..+..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 456677777766654 4454443 667777777764 666556666666677777777777766655666666677777
Q ss_pred EEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCE
Q 038106 111 KLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTT 190 (349)
Q Consensus 111 ~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~ 190 (349)
+|++++|.+....+. .+..+++|++|++++|.+....+. .+..++..++.|++++|.+.+..+..+..++ |++
T Consensus 129 ~L~Ls~N~l~~~~p~-----~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 129 TLDFSYNALSGTLPP-----SISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp EEECCSSEEESCCCG-----GGGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred EEeCCCCccCCcCCh-----HHhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 777777766543222 355666777777777766544443 3344444677777777777766666677666 888
Q ss_pred EEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccC
Q 038106 191 IDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNEL 270 (349)
Q Consensus 191 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 270 (349)
|++++|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 88888887766777777788888888888877754443 66778888888888887767777788888888888888888
Q ss_pred Cc-CCcccccCCCccEEEecCCc
Q 038106 271 TS-IPLTFWNLNNILYLNFSSNF 292 (349)
Q Consensus 271 ~~-~~~~~~~~~~L~~L~l~~~~ 292 (349)
.. +|.. ..+++|+.+++++|+
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccCCCC-ccccccChHHhcCCC
Confidence 75 5544 677888888888886
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-30 Score=234.32 Aligned_cols=332 Identities=18% Similarity=0.174 Sum_probs=245.4
Q ss_pred cccccEEecCCccccCccc-hhhccccccceeeccCceeccc----cCccccccCCcccEEeccCCcCCCccchhhc-cC
Q 038106 9 LRNLERLGLGLNKLIGTVP-AAIFNVSTLKSLELQDNSLFGS----ISSIIDVRLPNLERLLLWGNNFSGTIPRFIF-NA 82 (349)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~ 82 (349)
.++|++|+++++++..... ..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+.+..+..+. .+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 3678999999998875433 4478899999999999998543 23333 3689999999999998765454443 34
Q ss_pred C----CceEEEccCCcccc----cccccccCCCCCCEEEccCCcccCCCccchhccc-ccCCCCCcEEeCCCCccccccC
Q 038106 83 S----KLSILEFSKNSFSG----FIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSS-LSNCKSLTHIGLSNNPLDCILP 153 (349)
Q Consensus 83 ~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~ 153 (349)
+ +|++|++++|.++. .++..+..+++|++|++++|.+...... .+... ....++|++|++++|.+.....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ-LLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH-HHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 4 69999999999874 3467788999999999999987543221 11112 2335689999999998875322
Q ss_pred Cc---cccCcccccCeeeecCcccccCcchhcc-----CCCCCCEEEcCCccCCCc----cchhccccCCCCeeecCCCc
Q 038106 154 KT---SIGNLSHSLEDFKMHNCNVSGGIPEEIS-----NLTNLTTIDLGGNMLNGS----IPITLSKLQKLQGLRFEDNK 221 (349)
Q Consensus 154 ~~---~~~~~~~~l~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~ 221 (349)
.. .+.. .++++.|++++|.+.+.....+. ..++|++|++++|.+.+. .+..+..+++|++|++++|.
T Consensus 160 ~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 160 EPLASVLRA-KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHhh-CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 11 1222 24899999999998755443333 367999999999998864 35566778999999999998
Q ss_pred CCCCCc-----hhhccCCcccEEEcCCCccCCC----ChhhhhCCCCCceEecCCccCCc-----CCcccc-cCCCccEE
Q 038106 222 LEGSIP-----DSICRLTELYELELGGNKLFGS----IPACFSNLASLRILSLGSNELTS-----IPLTFW-NLNNILYL 286 (349)
Q Consensus 222 ~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~-~~~~L~~L 286 (349)
+++... ..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+ +...+. ..++|++|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 764322 2223589999999999988754 35566779999999999998865 222222 33699999
Q ss_pred EecCCcCCCCC----CccccccccccEEEccCCeeeeccCccccc-----CCCCceEecCCccccC
Q 038106 287 NFSSNFFTAPL----PLEIGNLKVLVGMDFSMNNFSGVIPTEIGG-----LKNLEYLFLGYNRLQG 343 (349)
Q Consensus 287 ~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~l~l~~~~~~~ 343 (349)
++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+.. .++|++|++++|++++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 99999988753 344567799999999999987655444432 6799999999999874
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=5.5e-27 Score=208.53 Aligned_cols=309 Identities=25% Similarity=0.255 Sum_probs=166.2
Q ss_pred hhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCc-------------ccEEeccCCc
Q 038106 4 PEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPN-------------LERLLLWGNN 70 (349)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~ 70 (349)
+..-+...|++|+++++++ +.+|..+.++++|++|++++|.+.+..|..+. .+.+ +++|++++|.
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCc
Confidence 3444578999999999999 79999999999999999999998766776554 4443 3666666666
Q ss_pred CCCccchhhccCCCceEEEccCCccccccccc----------------ccC-CCCCCEEEccCCcccCCCccchhccccc
Q 038106 71 FSGTIPRFIFNASKLSILEFSKNSFSGFIPNT----------------FGN-LRNLQKLRLYDNYLTSSTPELSFLSSLS 133 (349)
Q Consensus 71 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~l~ 133 (349)
++. .|.. .++|++|++++|.+.+ ++.. +.. .++|++|++++|.+...+ .+.
T Consensus 83 l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-------~~~ 150 (454)
T 1jl5_A 83 LSS-LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-------ELQ 150 (454)
T ss_dssp CSC-CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-------CCT
T ss_pred ccc-CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-------ccC
Confidence 552 2221 2345555555554442 1111 111 156777777777666543 367
Q ss_pred CCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCC
Q 038106 134 NCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQ 213 (349)
Q Consensus 134 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 213 (349)
.+++|++|++++|.+... +. .+.++++|++++|.+.+ ++ .+..+++|++|++++|.+.+ .+. ..++|+
T Consensus 151 ~l~~L~~L~l~~N~l~~l-p~-----~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~ 218 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKL-PD-----LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD---LPLSLE 218 (454)
T ss_dssp TCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC---CCTTCC
T ss_pred CCCCCCEEECCCCcCccc-CC-----CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC---CcCccc
Confidence 788889999988887642 21 23488888888888875 44 47788888888888887763 222 124677
Q ss_pred eeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhh-----------------hCCCCCceEecCCccCCcCCcc
Q 038106 214 GLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACF-----------------SNLASLRILSLGSNELTSIPLT 276 (349)
Q Consensus 214 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~ 276 (349)
.|++++|.+. ..| .+..+++|+.|++++|.+... +..+ ..+++|++|++++|.+..++..
T Consensus 219 ~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 219 SIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp EEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCC
T ss_pred EEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCc
Confidence 7777777666 344 356666777777776665431 1110 0113444445544444432211
Q ss_pred ---c-------------ccC-CCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCc
Q 038106 277 ---F-------------WNL-NNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYN 339 (349)
Q Consensus 277 ---~-------------~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 339 (349)
+ ... ++|++|++++|.+.+ .+.. +++|+.|++++|.+. .+|. .+++|+.|++++|
T Consensus 296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCC
Confidence 0 011 355555555555554 2221 467777777777776 3444 3678888888888
Q ss_pred cccC--CCCCCC
Q 038106 340 RLQG--SIPDSF 349 (349)
Q Consensus 340 ~~~~--~~p~~~ 349 (349)
++++ .+|+++
T Consensus 368 ~l~~l~~ip~~l 379 (454)
T 1jl5_A 368 PLREFPDIPESV 379 (454)
T ss_dssp CCSSCCCCCTTC
T ss_pred CCCcCCCChHHH
Confidence 8887 666653
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.9e-27 Score=202.49 Aligned_cols=254 Identities=17% Similarity=0.184 Sum_probs=121.5
Q ss_pred cccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCc
Q 038106 60 NLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT 139 (349)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~ 139 (349)
+|++|++++|.+....+..+.++++|++|++++|.+....+..+.++++|++|++++|.+...+.. .+..+++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~ 127 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS-----WFKPLSSLT 127 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH-----HHTTCTTCS
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh-----HhCCCccCC
Confidence 444444444444433233444444455555544444443334444444455555544444433321 133444455
Q ss_pred EEeCCCCccccccCCccccCcccccCeeeecCcc-cccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecC
Q 038106 140 HIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCN-VSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFE 218 (349)
Q Consensus 140 ~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 218 (349)
+|++++|.+........+..+ +++++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 555544444322111122222 245555555442 333333345555556666665555554445555555556666666
Q ss_pred CCcCCCCCchhhccCCcccEEEcCCCccCCCChhhh---hCCCCCceEecCCccCCc-----CCcccccCCCccEEEecC
Q 038106 219 DNKLEGSIPDSICRLTELYELELGGNKLFGSIPACF---SNLASLRILSLGSNELTS-----IPLTFWNLNNILYLNFSS 290 (349)
Q Consensus 219 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~ 290 (349)
+|.+.......+..+++|+.|++++|.+.......+ ...+.++.++++++.+.+ ++..+..+++|++|++++
T Consensus 207 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred CCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 555542222223345566666666655543322221 223445555555554443 444555666666666666
Q ss_pred CcCCCCCCccccccccccEEEccCCeeee
Q 038106 291 NFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
|.+.......+..+++|+.|++++|.+.+
T Consensus 287 N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 66665332234566666666666666553
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-26 Score=196.87 Aligned_cols=277 Identities=22% Similarity=0.286 Sum_probs=179.0
Q ss_pred cEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEE
Q 038106 62 ERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHI 141 (349)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L 141 (349)
+.++.+++.++ ..|..+ .++|++|+++++.+.......+.++++|++|++++|.+...... ...+..+++|++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC---SQSDFGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE---EHHHHSCSCCCEE
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc---ccccccccccCEE
Confidence 56777777766 445433 36889999999988865555678889999999998877643211 0124457888999
Q ss_pred eCCCCccccccCCccccCcccccCeeeecCcccccCcc-hhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCC
Q 038106 142 GLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIP-EEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN 220 (349)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 220 (349)
++++|.+..... .+..+ +++++|+++++.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 84 ~Ls~n~i~~l~~--~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 84 DLSFNGVITMSS--NFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp ECCSCSEEEEEE--EEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred ECCCCccccChh--hcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 998888764322 12332 367777777777765443 35667777777777777766555666666777777777777
Q ss_pred cCCC-CCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEecCCcCCCCCC
Q 038106 221 KLEG-SIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTAPLP 298 (349)
Q Consensus 221 ~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 298 (349)
.+.+ ..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..++. .+..+++|++|++++|.+.+..+
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 6654 355566677777777777777665556666677777777777777766543 45666777777777777776666
Q ss_pred ccccccc-cccEEEccCCeeeeccC--cccccCCCCceEecCCccccCCCCC
Q 038106 299 LEIGNLK-VLVGMDFSMNNFSGVIP--TEIGGLKNLEYLFLGYNRLQGSIPD 347 (349)
Q Consensus 299 ~~~~~~~-~L~~L~l~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~p~ 347 (349)
..+..++ +|+.|++++|.+.+... .....+...+.+.+..+.+.+..|+
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred HHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 6666663 67777777777654211 1112223344444555555544443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.3e-27 Score=203.36 Aligned_cols=280 Identities=18% Similarity=0.193 Sum_probs=195.9
Q ss_pred ccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceE
Q 038106 8 NLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSI 87 (349)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 87 (349)
.|+.....+.++++++ .+|..+. ++|++|++++|.+....+..+ ..+++|++|++++|.+....+..+.++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHh-ccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4555566677777665 4554433 478888888888755444334 47888888888888887666667888888888
Q ss_pred EEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCee
Q 038106 88 LEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDF 167 (349)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L 167 (349)
|++++|.+....+..+.++++|++|++++|.+...+.. ..+..+++|++|++++|......+...+..+ ++++.|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L 179 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET----SLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEEL 179 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS----CSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch----hhhccCCCCcEEECCCCccccccCHHHccCC-CCCCEE
Confidence 88888888765555577888888888888877765541 1366778888888888743223333344444 378888
Q ss_pred eecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhh---ccCCcccEEEcCCC
Q 038106 168 KMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI---CRLTELYELELGGN 244 (349)
Q Consensus 168 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~ 244 (349)
++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+ .....++.+++.++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 888888877767778888888888888888764444444557888888888887775443332 23566777777777
Q ss_pred ccCC----CChhhhhCCCCCceEecCCccCCcCCcc-cccCCCccEEEecCCcCCCC
Q 038106 245 KLFG----SIPACFSNLASLRILSLGSNELTSIPLT-FWNLNNILYLNFSSNFFTAP 296 (349)
Q Consensus 245 ~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 296 (349)
.+.+ ..+..+..+++|++|++++|.++.++.. +..+++|++|++++|++...
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 6643 2345567788888888888888887765 46788888888888887763
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-26 Score=196.95 Aligned_cols=281 Identities=21% Similarity=0.291 Sum_probs=191.9
Q ss_pred cEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCc--cchhhccCCCceEEEc
Q 038106 13 ERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGT--IPRFIFNASKLSILEF 90 (349)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l 90 (349)
+.++.+++.++ .+|..+. ++|++|++++|.+. ..+...+..+++|++|++++|.+... .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 56777777665 4554332 57888888888874 44444445788888888888877632 2455667788888888
Q ss_pred cCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeec
Q 038106 91 SKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMH 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~ 170 (349)
++|.+.. .+..+..+++|++|++++|.+...+.. ..+..+++|++|++++|.+..
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~n~l~~-------------------- 140 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF----SVFLSLRNLIYLDISHTHTRV-------------------- 140 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTT----TTTTTCTTCCEEECTTSCCEE--------------------
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccc----hhhhhccCCCEEECCCCcCCc--------------------
Confidence 8888773 455577788888888888877665431 135566777777777766543
Q ss_pred CcccccCcchhccCCCCCCEEEcCCccCCC-ccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCC
Q 038106 171 NCNVSGGIPEEISNLTNLTTIDLGGNMLNG-SIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGS 249 (349)
Q Consensus 171 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 249 (349)
..+..+..+++|++|++++|.+.+ ..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 141 ------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 141 ------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp ------CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred ------cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 233445667777888888777764 3556677777888888888877766667777888888888888887766
Q ss_pred ChhhhhCCCCCceEecCCccCCc-CCcccccC-CCccEEEecCCcCCCCCCc-c-ccccccccEEEccCCeeeeccCccc
Q 038106 250 IPACFSNLASLRILSLGSNELTS-IPLTFWNL-NNILYLNFSSNFFTAPLPL-E-IGNLKVLVGMDFSMNNFSGVIPTEI 325 (349)
Q Consensus 250 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~l 325 (349)
.+..+..+++|++|++++|.+.. .+..+..+ ++|++|++++|++...... . ..-+...+.+.+..+.+....|..+
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 66667788888888888888877 45556666 4889999999888763221 1 1122334444555555555666665
Q ss_pred ccC
Q 038106 326 GGL 328 (349)
Q Consensus 326 ~~~ 328 (349)
.+.
T Consensus 295 ~g~ 297 (306)
T 2z66_A 295 QGM 297 (306)
T ss_dssp TTC
T ss_pred CCc
Confidence 543
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-28 Score=207.16 Aligned_cols=260 Identities=19% Similarity=0.164 Sum_probs=167.0
Q ss_pred ccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEc
Q 038106 35 TLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRL 114 (349)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 114 (349)
.++..+++.+.+.... ..+...+++|++|++++|.+....+..+..+++|++|++++|.+....+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHH-HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhH-HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4566677777663333 3344477899999999999887777888899999999999998875443 788899999999
Q ss_pred cCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcC
Q 038106 115 YDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLG 194 (349)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 194 (349)
++|.+...+ ..++|++|++++|.+....+.. .++++.|++++|.+....+..+..+++|++|+++
T Consensus 88 s~n~l~~l~----------~~~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 88 NNNYVQELL----------VGPSIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp CSSEEEEEE----------ECTTCCEEECCSSCCSEEEECC-----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred cCCcccccc----------CCCCcCEEECCCCccCCcCccc-----cCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 998776432 3478888888888876543321 2356677777776665555555666667777776
Q ss_pred CccCCCccchhc-cccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcC
Q 038106 195 GNMLNGSIPITL-SKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI 273 (349)
Q Consensus 195 ~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 273 (349)
+|.+.+..+..+ ..+++|+.|++++|.+++. + ....+++|++|++++|.+... +..+..+++|++|++++|.++.+
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l 229 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI 229 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEE
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccch
Confidence 666664444433 2456666666666665532 1 122356666666666665532 23355566666666666666666
Q ss_pred CcccccCCCccEEEecCCcCC-CCCCccccccccccEEEccCC
Q 038106 274 PLTFWNLNNILYLNFSSNFFT-APLPLEIGNLKVLVGMDFSMN 315 (349)
Q Consensus 274 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 315 (349)
+..+..+++|++|++++|++. +..+..+..++.|+.+++.++
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 555556666666666666655 323344555566666665533
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.2e-26 Score=191.28 Aligned_cols=268 Identities=22% Similarity=0.222 Sum_probs=181.0
Q ss_pred ceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccC
Q 038106 37 KSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYD 116 (349)
Q Consensus 37 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 116 (349)
++++.+++.+. ..|.. ..++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777776663 33332 356788888888888765556677788888888888887766677777888888888888
Q ss_pred Cc-ccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCC
Q 038106 117 NY-LTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGG 195 (349)
Q Consensus 117 ~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 195 (349)
|. +....+. .+..+++|++|++++|.+.. ..+..+..+++|++|++++
T Consensus 90 n~~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~--------------------------~~~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 90 NAQLRSVDPA-----TFHGLGRLHTLHLDRCGLQE--------------------------LGPGLFRGLAALQYLYLQD 138 (285)
T ss_dssp CTTCCCCCTT-----TTTTCTTCCEEECTTSCCCC--------------------------CCTTTTTTCTTCCEEECCS
T ss_pred CCCccccCHH-----HhcCCcCCCEEECCCCcCCE--------------------------ECHhHhhCCcCCCEEECCC
Confidence 76 5554332 35566777777777766543 2234456667777777777
Q ss_pred ccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCc
Q 038106 196 NMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL 275 (349)
Q Consensus 196 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 275 (349)
|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..++.
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred CcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 77765555556677777777777777765555567777888888888887776666777778888888888888877653
Q ss_pred -ccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCccccc--CCCCceEecCCcc
Q 038106 276 -TFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGG--LKNLEYLFLGYNR 340 (349)
Q Consensus 276 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--~~~L~~l~l~~~~ 340 (349)
.+..+++|++|++++|++..+... ......++.+....+.+....|..+.. +..++..++.+|+
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred HHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 467778888888888877653221 111233444455666666666665543 4566666777764
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=8.4e-26 Score=192.78 Aligned_cols=228 Identities=18% Similarity=0.227 Sum_probs=126.3
Q ss_pred cccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEE
Q 038106 34 STLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLR 113 (349)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 113 (349)
+.++.|+++++.+. ..+..+. .+++|++|++++|.+. ..|..+..+++|++|++++|.+. .++..+.++++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 56666666666663 4444444 4666666666666666 55666666666777777666666 4455666666777777
Q ss_pred ccCCcccCCCccc-h---hcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCC
Q 038106 114 LYDNYLTSSTPEL-S---FLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLT 189 (349)
Q Consensus 114 l~~~~~~~~~~~~-~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~ 189 (349)
+++|......+.. . ....+..+++|++|++++|.+. .+|..+..+++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---------------------------~lp~~l~~l~~L~ 209 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---------------------------SLPASIANLQNLK 209 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---------------------------CCCGGGGGCTTCC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC---------------------------cchHhhcCCCCCC
Confidence 7665443322210 0 0011233555555555555443 2223344555555
Q ss_pred EEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCcc
Q 038106 190 TIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNE 269 (349)
Q Consensus 190 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 269 (349)
+|++++|.+.+ .+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus 210 ~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 210 SLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp EEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred EEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 55555555552 33345555555666665555555555555556666666666655555555555556666666666654
Q ss_pred CCc-CCcccccCCCccEEEecCCcC
Q 038106 270 LTS-IPLTFWNLNNILYLNFSSNFF 293 (349)
Q Consensus 270 ~~~-~~~~~~~~~~L~~L~l~~~~~ 293 (349)
+.. +|..+..+++|+.+.+..+.+
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred chhhccHHHhhccCceEEeCCHHHH
Confidence 433 555566666666666555443
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.1e-25 Score=198.06 Aligned_cols=225 Identities=26% Similarity=0.329 Sum_probs=95.8
Q ss_pred cccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCc
Q 038106 60 NLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT 139 (349)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~ 139 (349)
++++|++++|.+....+..|.++++|++|++++|.+....+..+.++++|++|++++|.+...+.. .+..+++|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~ 150 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG-----AFEYLSKLR 150 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT-----TSSSCTTCC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh-----hhcccCCCC
Confidence 344444444444433333444444444444444444433333444444444444444444333322 133344444
Q ss_pred EEeCCCCccccccCCccccCcccccCeeeecCcccccCc-chhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecC
Q 038106 140 HIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGI-PEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFE 218 (349)
Q Consensus 140 ~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 218 (349)
+|++++|.+....+ ..+..+ ++++.|+++++.....+ +..+..+++|++|++++|.+.+. + .+..+++|+.|+++
T Consensus 151 ~L~L~~N~l~~~~~-~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 151 ELWLRNNPIESIPS-YAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMS 226 (452)
T ss_dssp EEECCSCCCCEECT-TTTTTC-TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECT
T ss_pred EEECCCCCcceeCH-hHHhcC-CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECc
Confidence 44444444432211 122222 14444444442222111 22344444555555555544421 1 23344455555555
Q ss_pred CCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEecCCcC
Q 038106 219 DNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFF 293 (349)
Q Consensus 219 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 293 (349)
+|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.++. .+..+++|++|++++|++
T Consensus 227 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 555444444444555555555555554444444444445555555555555544332 233445555555555443
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=6.4e-26 Score=190.14 Aligned_cols=225 Identities=23% Similarity=0.245 Sum_probs=169.8
Q ss_pred cEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccC
Q 038106 13 ERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSK 92 (349)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 92 (349)
++++.++..++ .+|..+ .++|++|+++++.+....+..+ ..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 57888887776 455433 4689999999999966555544 4899999999999999877788899999999999999
Q ss_pred Cc-ccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecC
Q 038106 93 NS-FSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHN 171 (349)
Q Consensus 93 ~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~ 171 (349)
|. +....+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+....
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~------------------- 145 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-----LFRGLAALQYLYLQDNALQALP------------------- 145 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-----TTTTCTTCCEEECCSSCCCCCC-------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHh-----HhhCCcCCCEEECCCCcccccC-------------------
Confidence 97 7766678899999999999999998876543 4777889999999888775321
Q ss_pred cccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCCh
Q 038106 172 CNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIP 251 (349)
Q Consensus 172 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 251 (349)
+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+
T Consensus 146 -------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 146 -------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred -------HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 2234556667777777776664444456666777777777777666556667777777777777777766655
Q ss_pred hhhhCCCCCceEecCCccCCc
Q 038106 252 ACFSNLASLRILSLGSNELTS 272 (349)
Q Consensus 252 ~~~~~~~~L~~L~l~~~~~~~ 272 (349)
..+..+++|++|++++|++..
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEEC
T ss_pred HHcccCcccCEEeccCCCccC
Confidence 667777777777777776654
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.9e-25 Score=196.67 Aligned_cols=226 Identities=23% Similarity=0.263 Sum_probs=97.6
Q ss_pred ccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEc
Q 038106 35 TLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRL 114 (349)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 114 (349)
+++.|++++|.+....+..+ ..+++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 44455555554433332222 24455555555555444333344444455555555555444333334444455555555
Q ss_pred cCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcC
Q 038106 115 YDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLG 194 (349)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 194 (349)
++|.+...+.. .+..+++|+.|+++++......+...+..++ +|++|++++|.+... + .+..+++|++|+++
T Consensus 144 ~~N~i~~~~~~-----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 144 RNNPIESIPSY-----AFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLREI-P-NLTPLIKLDELDLS 215 (440)
T ss_dssp CSCCCCEECTT-----TTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCEEECTTSCCSSC-C-CCTTCSSCCEEECT
T ss_pred CCCcccccCHH-----HhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCeecCCCCcCccc-c-ccCCCcccCEEECC
Confidence 55444433322 2344445555555443322222222222222 444444444444321 1 13344444444444
Q ss_pred CccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCcc
Q 038106 195 GNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNE 269 (349)
Q Consensus 195 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 269 (349)
+|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|+
T Consensus 216 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 444443333444444444444444444443333444444444444444444443333334444444444444443
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.5e-25 Score=191.23 Aligned_cols=231 Identities=23% Similarity=0.315 Sum_probs=142.8
Q ss_pred CCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCC
Q 038106 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKS 137 (349)
Q Consensus 58 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~ 137 (349)
.++++.|+++++.+. ..|..+.++++|++|++++|.+. .++..++++++|++|++++|.+...+. .+..+++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~------~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPA------SIASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCG------GGGGCTT
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcH------HHhcCcC
Confidence 467788888888776 56666777788888888888777 566677777888888888777765443 3566777
Q ss_pred CcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeec
Q 038106 138 LTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRF 217 (349)
Q Consensus 138 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 217 (349)
|++|++++|......+. .+... .....+..+++|++|++++|.+. ..+..+..+++|+.|++
T Consensus 152 L~~L~L~~n~~~~~~p~--------~~~~~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 152 LRELSIRACPELTELPE--------PLAST---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213 (328)
T ss_dssp CCEEEEEEETTCCCCCS--------CSEEE---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred CCEEECCCCCCccccCh--------hHhhc---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence 77777777655433332 11111 11122455677777777777666 55555666666777777
Q ss_pred CCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCc-CCcccccCCCccEEEecCCcCCCC
Q 038106 218 EDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTS-IPLTFWNLNNILYLNFSSNFFTAP 296 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~ 296 (349)
++|.+.+ .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. +|..+..+++|++|++++|.+.+.
T Consensus 214 ~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 214 RNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp ESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred cCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 7666663 44455666666666666666555555555556666666666654433 455555555566666665555555
Q ss_pred CCccccccccccEEEccCC
Q 038106 297 LPLEIGNLKVLVGMDFSMN 315 (349)
Q Consensus 297 ~~~~~~~~~~L~~L~l~~~ 315 (349)
.|..+..+++++.+++..+
T Consensus 293 iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCGGGGGSCTTCEEECCGG
T ss_pred ccHHHhhccCceEEeCCHH
Confidence 5555555555555555544
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-27 Score=201.58 Aligned_cols=239 Identities=19% Similarity=0.191 Sum_probs=115.5
Q ss_pred cCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCc
Q 038106 81 NASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNL 160 (349)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 160 (349)
.+++|++|++++|.+....+..+..+++|++|++++|.+.... .+..+++|++|++++|.+....+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~Ls~n~l~~l~~------- 97 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------DLESLSTLRTLDLNNNYVQELLV------- 97 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-------EETTCTTCCEEECCSSEEEEEEE-------
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-------hhhhcCCCCEEECcCCccccccC-------
Confidence 3445555555555555444444555555555555555443321 13444555555555555443211
Q ss_pred ccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhh-ccCCcccEE
Q 038106 161 SHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYEL 239 (349)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 239 (349)
.++++.|++++|.+....+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..+++|++|
T Consensus 98 ~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 13455555555555433221 23445555555555554444444455555555555555544333333 244555555
Q ss_pred EcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeee-
Q 038106 240 ELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFS- 318 (349)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 318 (349)
++++|.+... .....+++|++|++++|.++.++..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.
T Consensus 175 ~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 175 NLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp ECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBH
T ss_pred ECCCCcCccc--ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccC
Confidence 5555554322 11223455555555555555554445555555555555555543 3334444555555555555554
Q ss_pred eccCcccccCCCCceEecCCc
Q 038106 319 GVIPTEIGGLKNLEYLFLGYN 339 (349)
Q Consensus 319 ~~~~~~l~~~~~L~~l~l~~~ 339 (349)
+..+..+..+++|+.+++.+|
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred cCHHHHHhccccceEEECCCc
Confidence 334444455555555555533
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1e-24 Score=199.73 Aligned_cols=267 Identities=25% Similarity=0.329 Sum_probs=199.8
Q ss_pred ccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEE
Q 038106 10 RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89 (349)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 89 (349)
.++++|+++++.++ .+|..+. ++|++|++++|.+. .++. .+++|++|++++|.++ ..|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE
Confidence 46889999999887 6665554 78999999999884 3333 4789999999999887 4444 578899999
Q ss_pred ccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeee
Q 038106 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKM 169 (349)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l 169 (349)
+++|.+... +. .+++|+.|++++|.+..++.. +++|++|++++|.+.... ..+.+++.|++
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~~---------l~~L~~L~Ls~N~l~~l~------~~~~~L~~L~L 168 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPVL---------PPGLQELSVSDNQLASLP------ALPSELCKLWA 168 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSCCC------CCCTTCCEEEC
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCCC---------CCCCCEEECcCCcCCCcC------CccCCCCEEEC
Confidence 999988753 33 568899999999988776532 378999999998876431 23457888888
Q ss_pred cCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCC
Q 038106 170 HNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGS 249 (349)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 249 (349)
++|.+.. ++ ..+++|+.|++++|.+.+ .+. ..++|+.|++++|.++. .+. .+++|+.|++++|.+...
T Consensus 169 ~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l 236 (622)
T 3g06_A 169 YNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL 236 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC
T ss_pred CCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC
Confidence 8888875 33 456788899998888874 332 24788888888888773 332 347888888888877643
Q ss_pred ChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCccccc
Q 038106 250 IPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGG 327 (349)
Q Consensus 250 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 327 (349)
+ ..+++|+.|++++|.++.+|. .+++|+.|++++|.+.. +|..+..+++|+.|++++|.+.+..+..+..
T Consensus 237 -p---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 237 -P---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp -C---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred -C---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 3 456788888888888888775 56788888888888885 6677888888888888888887766554443
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.1e-27 Score=221.31 Aligned_cols=331 Identities=14% Similarity=0.087 Sum_probs=187.3
Q ss_pred ccEEecCCcc-ccC-ccchhhccccccceeeccCceeccccCc---cccccCCcccEEeccCCcCCC----ccchhhccC
Q 038106 12 LERLGLGLNK-LIG-TVPAAIFNVSTLKSLELQDNSLFGSISS---IIDVRLPNLERLLLWGNNFSG----TIPRFIFNA 82 (349)
Q Consensus 12 L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~ 82 (349)
|++|++++|. +.. .++.....+++|++|++++|.+.+.... .+...+++|++|+++++.+.. ..+..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 7777777765 211 2333344677777777777766433211 123356777777777776652 233334556
Q ss_pred CCceEEEccCCcccccccccccCCCCCCEEEccCCcccCC-Cc--------------------cchhcccccCCCCCcEE
Q 038106 83 SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSS-TP--------------------ELSFLSSLSNCKSLTHI 141 (349)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~--------------------~~~~~~~l~~~~~L~~L 141 (349)
++|++|+++++.+.. .+..+..+++|++|.++....... .. .......+..+++|++|
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 777777777776653 334455556666666653211100 00 00011123445666666
Q ss_pred eCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCC-----------ccCCCccc-hhcccc
Q 038106 142 GLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGG-----------NMLNGSIP-ITLSKL 209 (349)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~~~-~~l~~~ 209 (349)
++++|.+........+..+ ++++.|++.++......+.....+++|++|++++ +.+++... .....+
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~-~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKC-PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EETTCCCCHHHHHHHHTTC-TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred ecCCCcCCHHHHHHHHHhC-cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 6666664322211112222 3666666663222222233334567777777772 33332222 223356
Q ss_pred CCCCeeecCCCcCCCCCchhhcc-CCcccEEEcC----CCccCCC-----ChhhhhCCCCCceEecCCcc--CCc--CCc
Q 038106 210 QKLQGLRFEDNKLEGSIPDSICR-LTELYELELG----GNKLFGS-----IPACFSNLASLRILSLGSNE--LTS--IPL 275 (349)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~--~~~ 275 (349)
++|+.|+++.+.+++..+..+.. +++|+.|++. .+.+++. ....+..+++|++|++++|. +.+ +..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 77777777666666544444443 7788888885 3344432 22234567888888886543 443 222
Q ss_pred ccccCCCccEEEecCCcCCCCC-CccccccccccEEEccCCeeeec-cCcccccCCCCceEecCCccccCC
Q 038106 276 TFWNLNNILYLNFSSNFFTAPL-PLEIGNLKVLVGMDFSMNNFSGV-IPTEIGGLKNLEYLFLGYNRLQGS 344 (349)
Q Consensus 276 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~~~~ 344 (349)
....+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+. ++..+..+++|++|+|++|+++..
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 2344788999999988877632 23346788999999999987653 333446789999999999998754
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=4.7e-25 Score=196.84 Aligned_cols=246 Identities=22% Similarity=0.240 Sum_probs=152.5
Q ss_pred cEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccC
Q 038106 13 ERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSK 92 (349)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 92 (349)
+.++.++.+++ .+|..+. +++++|++++|.+....+..+. .+++|++|++++|.+....+..|.++++|++|++++
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45555555544 3443322 4667777777666444444433 667777777777766655556666667777777777
Q ss_pred CcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCc
Q 038106 93 NSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNC 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 172 (349)
|.+....+..+..+++|++|++++|.+...+.. .+..+++|+.|+++++......+...+..++ +|++|++++|
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n 206 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY-----AFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMC 206 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTT-----TTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTS
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHh-----HHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCC
Confidence 766655555566667777777777666544432 3556667777777664443333433344333 6677777777
Q ss_pred ccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChh
Q 038106 173 NVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPA 252 (349)
Q Consensus 173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 252 (349)
.+.+. + .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+......
T Consensus 207 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 207 NIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp CCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 66643 2 355666777777777777655566666777777777777776665666666777777777777766655555
Q ss_pred hhhCCCCCceEecCCccC
Q 038106 253 CFSNLASLRILSLGSNEL 270 (349)
Q Consensus 253 ~~~~~~~L~~L~l~~~~~ 270 (349)
.+..+++|+.|++++|++
T Consensus 285 ~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SSTTCTTCCEEECCSSCE
T ss_pred HhccccCCCEEEccCCCc
Confidence 566667777777777654
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=5.3e-25 Score=195.83 Aligned_cols=228 Identities=19% Similarity=0.180 Sum_probs=196.1
Q ss_pred ccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEE
Q 038106 10 RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89 (349)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 89 (349)
++++.|++++|++.+..+..|.++++|++|++++|.+....+..+ ..+++|++|++++|.+....+..+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF-NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGG-TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhc-cCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 679999999999987788899999999999999999865554444 4899999999999999866666789999999999
Q ss_pred ccCCcccccccccccCCCCCCEEEccCCc-ccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeee
Q 038106 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNY-LTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFK 168 (349)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~ 168 (349)
+++|.+....+..+.++++|++|++++|. +...+.. .+..+++|+.|++++|.+.... .+..+ .+|+.|+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-----~~~~l~~L~~L~L~~n~l~~~~---~~~~l-~~L~~L~ 213 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-----AFEGLSNLRYLNLAMCNLREIP---NLTPL-IKLDELD 213 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-----TTTTCSSCCEEECTTSCCSSCC---CCTTC-SSCCEEE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-----hhhcccccCeecCCCCcCcccc---ccCCC-cccCEEE
Confidence 99999987777789999999999999854 3333322 4778999999999999987542 23333 4899999
Q ss_pred ecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccC
Q 038106 169 MHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLF 247 (349)
Q Consensus 169 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 247 (349)
+++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9999999888888999999999999999999777888999999999999999999777778889999999999998763
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.3e-24 Score=197.46 Aligned_cols=263 Identities=24% Similarity=0.299 Sum_probs=213.6
Q ss_pred cccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEE
Q 038106 34 STLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLR 113 (349)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 113 (349)
.+++.|+++++.+. ..|..+ .++|++|++++|.++ .+|. .+++|++|++++|.++. ++. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCC---CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhh---CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 46899999999985 555443 389999999999988 4454 57899999999999885 333 679999999
Q ss_pred ccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEc
Q 038106 114 LYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDL 193 (349)
Q Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 193 (349)
+++|.+...+. .+++|+.|++++|.+..... ..++|++|++++|.+... +. .+++|+.|++
T Consensus 108 Ls~N~l~~l~~---------~l~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L 168 (622)
T 3g06_A 108 IFSNPLTHLPA---------LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLASL-PA---LPSELCKLWA 168 (622)
T ss_dssp ECSCCCCCCCC---------CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCC-CC---CCTTCCEEEC
T ss_pred CcCCcCCCCCC---------CCCCcCEEECCCCCCCcCCC------CCCCCCEEECcCCcCCCc-CC---ccCCCCEEEC
Confidence 99998887653 45789999999999875322 136899999999998753 32 3578999999
Q ss_pred CCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcC
Q 038106 194 GGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI 273 (349)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 273 (349)
++|.+.+ .+ ..+++|+.|++++|.+++ ++. .+++|+.|++++|.+... +. .+++|+.|++++|.++.+
T Consensus 169 ~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~l 236 (622)
T 3g06_A 169 YNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSL 236 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCC
T ss_pred CCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCcC
Confidence 9999884 33 456899999999999884 332 357899999999988633 32 358899999999999998
Q ss_pred CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCCC
Q 038106 274 PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347 (349)
Q Consensus 274 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~ 347 (349)
+ ..+++|++|++++|.+.. ++. .+++|+.|++++|.+. .+|..+..+++|+.|+|++|++++..|.
T Consensus 237 p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 8 456899999999999987 444 5789999999999998 7788899999999999999999876553
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.3e-26 Score=193.54 Aligned_cols=252 Identities=19% Similarity=0.164 Sum_probs=147.9
Q ss_pred hccccccceeeccCceeccccCccccccCCcccEEeccCCcCCC-ccchhhc-------cCCCceEEEccCCcccccccc
Q 038106 30 IFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSG-TIPRFIF-------NASKLSILEFSKNSFSGFIPN 101 (349)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~ 101 (349)
+...++|+.|++++|.+ ..|..+... |++|+++++.+.. ..+..+. .+++|++|++++|.+.+..+.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34456677777777766 334333312 6666776666532 2333333 567777777777777655555
Q ss_pred cc--cCCCCCCEEEccCCcccCCCccchhccccc--CCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccC
Q 038106 102 TF--GNLRNLQKLRLYDNYLTSSTPELSFLSSLS--NCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGG 177 (349)
Q Consensus 102 ~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 177 (349)
.+ ..+++|++|++++|.+...+... ..+. ..++|++|++++|.+....+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~l~~~~~~~L~~L~L~~N~l~~~~~------------------------ 166 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDAWL---AELQQWLKPGLKVLSIAQAHSLNFSC------------------------ 166 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSSHH---HHHHTTCCTTCCEEEEESCSCCCCCT------------------------
T ss_pred HHHHhcCCCccEEEccCCCCcchhHHH---HHHHHhhcCCCcEEEeeCCCCccchH------------------------
Confidence 54 67777777777777776653211 1111 12677777777776643221
Q ss_pred cchhccCCCCCCEEEcCCccCCCc--cchhc--cccCCCCeeecCCCcCCCC---CchhhccCCcccEEEcCCCccCCCC
Q 038106 178 IPEEISNLTNLTTIDLGGNMLNGS--IPITL--SKLQKLQGLRFEDNKLEGS---IPDSICRLTELYELELGGNKLFGSI 250 (349)
Q Consensus 178 ~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~ 250 (349)
..+..+++|++|++++|.+.+. .+..+ ..+++|+.|++++|.+++. ....+..+++|+.|++++|.+....
T Consensus 167 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 167 --EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp --TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred --HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 2234455555555555554322 11122 4455566666666655421 1122345567777777777665443
Q ss_pred h-hhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee
Q 038106 251 P-ACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 251 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
+ ..+..+++|++|++++|.++.+|..+. ++|++|++++|.+.+. +. +..+++|+.|++++|.+.+
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 2 334456777777777777777766555 7788888888877764 43 6677888888888877653
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-25 Score=200.01 Aligned_cols=236 Identities=19% Similarity=0.166 Sum_probs=131.0
Q ss_pred cCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCC
Q 038106 57 RLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCK 136 (349)
Q Consensus 57 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 136 (349)
.+++|++|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+...+ ..+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----------~~~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----------VGP 99 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----------ECT
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----------CCC
Confidence 44578888888888776666777778888888888887765433 677788888888877665432 236
Q ss_pred CCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhcc-ccCCCCee
Q 038106 137 SLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLS-KLQKLQGL 215 (349)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L 215 (349)
+|++|++++|.+....+. . .++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|
T Consensus 100 ~L~~L~L~~N~l~~~~~~----~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS----R-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp TCCEEECCSSCCCCEEEC----C-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CcCEEECcCCcCCCCCcc----c-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 777777777776544322 1 12455555555555544444455555555555555555544443333 44555555
Q ss_pred ecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCC-
Q 038106 216 RFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFT- 294 (349)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 294 (349)
++++|.+++. + ....+++|+.|++++|.+... +..+..+++|+.|++++|.+..+|..+..+++|+.|++++|++.
T Consensus 175 ~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 175 NLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp ECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCH
T ss_pred ecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcC
Confidence 5555555432 1 122345555555555554432 22244445555555555555554444444455555555555444
Q ss_pred CCCCccccccccccEEEc
Q 038106 295 APLPLEIGNLKVLVGMDF 312 (349)
Q Consensus 295 ~~~~~~~~~~~~L~~L~l 312 (349)
+..+..+..++.++.+++
T Consensus 252 ~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEec
Confidence 112223334444444444
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=1.7e-27 Score=220.12 Aligned_cols=327 Identities=15% Similarity=0.095 Sum_probs=184.7
Q ss_pred ccccccEEecCCccccCccchhhcc-ccc-cceeeccCce-eccccCccccccCCcccEEeccCCcCCCc----cchhhc
Q 038106 8 NLRNLERLGLGLNKLIGTVPAAIFN-VST-LKSLELQDNS-LFGSISSIIDVRLPNLERLLLWGNNFSGT----IPRFIF 80 (349)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~ 80 (349)
.+++|++|++++|.+.+..+..+.. ++. |++|++++|. +.......+...+++|++|++++|.+.+. .+....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5566666666666555444444433 333 6666666654 21111112223566666666666655433 222334
Q ss_pred cCCCceEEEccCCcccc----cccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccc-------
Q 038106 81 NASKLSILEFSKNSFSG----FIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLD------- 149 (349)
Q Consensus 81 ~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------- 149 (349)
.+++|++|+++++.+.. ..+..+.++++|++|++++|.+...+ ..+..+++|+.|+++.....
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~------~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV------GFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH------HHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH------HHHhhhhHHHhhcccccccccchHHHH
Confidence 55666666666666541 22223445667777777666554322 12333444444444321100
Q ss_pred -------------------cccCCccccCcccccCeeeecCcccccCcc-hhccCCCCCCEEEcCCccCCCc-cchhccc
Q 038106 150 -------------------CILPKTSIGNLSHSLEDFKMHNCNVSGGIP-EEISNLTNLTTIDLGGNMLNGS-IPITLSK 208 (349)
Q Consensus 150 -------------------~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~ 208 (349)
...+ .+....+++++|++++|.+++... ..+..+++|++|+++ +.+.+. .......
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMP--ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQY 340 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGG--GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHH
T ss_pred HHhhccccccccCccccchhHHH--HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHh
Confidence 0000 111112367777777776543322 335667777777776 333222 2333345
Q ss_pred cCCCCeeecCC----------C-cCCCCCc-hhhccCCcccEEEcCCCccCCCChhhhhC-CCCCceEecC----CccCC
Q 038106 209 LQKLQGLRFED----------N-KLEGSIP-DSICRLTELYELELGGNKLFGSIPACFSN-LASLRILSLG----SNELT 271 (349)
Q Consensus 209 ~~~L~~L~l~~----------~-~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~ 271 (349)
+++|++|++.+ | .+++... .....+++|+.|++..+.+++.....+.. +++|++|++. .+.++
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 67788888873 3 3432212 22345788888888666666555555554 7888888886 44555
Q ss_pred cC------CcccccCCCccEEEecCCc--CCCCCCcccc-ccccccEEEccCCeeeec-cCcccccCCCCceEecCCccc
Q 038106 272 SI------PLTFWNLNNILYLNFSSNF--FTAPLPLEIG-NLKVLVGMDFSMNNFSGV-IPTEIGGLKNLEYLFLGYNRL 341 (349)
Q Consensus 272 ~~------~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~ 341 (349)
+. +..+..+++|++|++++|. +++.....+. .+++|+.|++++|.+.+. ++..+..+++|++|+|++|++
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 43 2235668899999997654 4443333343 478999999999988763 344457889999999999997
Q ss_pred cC
Q 038106 342 QG 343 (349)
Q Consensus 342 ~~ 343 (349)
++
T Consensus 501 ~~ 502 (592)
T 3ogk_B 501 SE 502 (592)
T ss_dssp BH
T ss_pred cH
Confidence 53
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1e-25 Score=191.16 Aligned_cols=249 Identities=18% Similarity=0.124 Sum_probs=187.8
Q ss_pred ccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccc-ccccccc-------CCCCCCEEEccCCcccCCCccch
Q 038106 56 VRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSG-FIPNTFG-------NLRNLQKLRLYDNYLTSSTPELS 127 (349)
Q Consensus 56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~ 127 (349)
...++|+.+++++|.+ ..|..+... |+.|+++++.+.. ..+..+. ++++|++|++++|.+....+...
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3677889999998888 455555443 8888888887742 2333333 57888888888888764333210
Q ss_pred hcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccC-----CCCCCEEEcCCccCCCcc
Q 038106 128 FLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISN-----LTNLTTIDLGGNMLNGSI 202 (349)
Q Consensus 128 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~ 202 (349)
.+..+++|++|++++|.+... + ..+.. +++|++|++++|.+.+..
T Consensus 116 ---~~~~l~~L~~L~Ls~N~l~~~-~--------------------------~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 116 ---LEATGPDLNILNLRNVSWATR-D--------------------------AWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp ---SSCCSCCCSEEEEESCBCSSS-S--------------------------SHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred ---HHhcCCCccEEEccCCCCcch-h--------------------------HHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 025667777777777766543 2 22222 389999999999998777
Q ss_pred chhccccCCCCeeecCCCcCCCC--Cchhh--ccCCcccEEEcCCCccCCC---ChhhhhCCCCCceEecCCccCCcCC-
Q 038106 203 PITLSKLQKLQGLRFEDNKLEGS--IPDSI--CRLTELYELELGGNKLFGS---IPACFSNLASLRILSLGSNELTSIP- 274 (349)
Q Consensus 203 ~~~l~~~~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~- 274 (349)
+..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+... ....+..+++|++|++++|.+...+
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 78899999999999999987643 23333 7889999999999988632 1233457899999999999998854
Q ss_pred -cccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccC
Q 038106 275 -LTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 343 (349)
Q Consensus 275 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 343 (349)
..+..+++|++|++++|.+.. .+..+. ++|+.|++++|.+.+. |. +..+++|++|++++|++++
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 355668999999999999985 665554 8999999999999865 55 8899999999999999985
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.5e-26 Score=212.46 Aligned_cols=133 Identities=14% Similarity=0.064 Sum_probs=80.3
Q ss_pred cCCCCeeecCCCcCCCCCchhhc-cCCcccEEEcC--C----CccCCCC-----hhhhhCCCCCceEecCCccCCc-CCc
Q 038106 209 LQKLQGLRFEDNKLEGSIPDSIC-RLTELYELELG--G----NKLFGSI-----PACFSNLASLRILSLGSNELTS-IPL 275 (349)
Q Consensus 209 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~-~~~ 275 (349)
+++|+.|.+..+.+++.....+. .+++|+.|++. + +.+++.. ...+..+++|++|++++ .+++ ...
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 55566665555555433333332 46777777776 2 2232111 11245567777777765 4443 111
Q ss_pred ccc-cCCCccEEEecCCcCCCCCCccc-cccccccEEEccCCeeeeccCc-ccccCCCCceEecCCcccc
Q 038106 276 TFW-NLNNILYLNFSSNFFTAPLPLEI-GNLKVLVGMDFSMNNFSGVIPT-EIGGLKNLEYLFLGYNRLQ 342 (349)
Q Consensus 276 ~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~l~l~~~~~~ 342 (349)
.+. .+++|++|++++|.+++.....+ ..+++|+.|++++|.+.+.... .+..+++|+.|++++|+++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 222 37788888888888766444444 5678899999999888543333 3455788999999999874
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5.6e-23 Score=170.71 Aligned_cols=180 Identities=26% Similarity=0.295 Sum_probs=87.9
Q ss_pred ccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcC
Q 038106 163 SLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELG 242 (349)
Q Consensus 163 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 242 (349)
+++.|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 34444444444433333344445555555555555543333334445555555555555544333444455555555555
Q ss_pred CCccCCCChhhhhCCCCCceEecCCccCCcCCcc-cccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeecc
Q 038106 243 GNKLFGSIPACFSNLASLRILSLGSNELTSIPLT-FWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVI 321 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 321 (349)
+|.+....+..+..+++|++|++++|.+..++.. +..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 5555444444444555555555555555554332 444555555555555555433334445555555555555555433
Q ss_pred CcccccCCCCceEecCCcccc
Q 038106 322 PTEIGGLKNLEYLFLGYNRLQ 342 (349)
Q Consensus 322 ~~~l~~~~~L~~l~l~~~~~~ 342 (349)
+..+..+++|+.|++++|++.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBC
T ss_pred HHHhccccCCCEEEecCCCee
Confidence 334445555555555555543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.1e-24 Score=195.62 Aligned_cols=232 Identities=18% Similarity=0.172 Sum_probs=110.6
Q ss_pred ccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEc
Q 038106 35 TLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRL 114 (349)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 114 (349)
+|++|++++|.+....+..+ ..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. ..++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 55555555555543333333 255555555555555543222 445555555555555544221 1255555555
Q ss_pred cCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhcc-CCCCCCEEEc
Q 038106 115 YDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEIS-NLTNLTTIDL 193 (349)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l 193 (349)
++|.+...+.. .+++|+.|++++|.+....+. .+..+ ++|+.|++++|.+.+..+..+. .+++|++|++
T Consensus 107 ~~N~l~~~~~~--------~l~~L~~L~L~~N~l~~~~~~-~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 107 ANNNISRVSCS--------RGQGKKNIYLANNKITMLRDL-DEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CSSCCCCEEEC--------CCSSCEEEECCSSCCCSGGGB-CGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred cCCcCCCCCcc--------ccCCCCEEECCCCCCCCCCch-hhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 55555443211 234555555555555433222 12222 2455555555555544444333 4555555555
Q ss_pred CCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCC--
Q 038106 194 GGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELT-- 271 (349)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-- 271 (349)
++|.+.+.. ....+++|+.|++++|.+++ .+..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+.
T Consensus 177 s~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 177 QYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred CCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 555554221 12234555555555555553 22234555555555555555542 3334445555555555555554
Q ss_pred cCCcccccCCCccEEEe
Q 038106 272 SIPLTFWNLNNILYLNF 288 (349)
Q Consensus 272 ~~~~~~~~~~~L~~L~l 288 (349)
.++..+..++.|+.+.+
T Consensus 253 ~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred chHHHHHhCCCCcEEec
Confidence 23444444455554444
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.1e-22 Score=167.91 Aligned_cols=206 Identities=18% Similarity=0.157 Sum_probs=128.8
Q ss_pred CCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCC
Q 038106 107 RNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLT 186 (349)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~ 186 (349)
+++++|++++|.+...+.. .+..+++|++|++++|.+....+. .+..+ +++++|++++|.+....+..+..++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY-----SFFSFPELQVLDLSRCEIQTIEDG-AYQSL-SHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCCEECTT-----TTTTCTTCSEEECTTCCCCEECTT-TTTTC-TTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccEEECCCCcccccCHh-----HhccccCCcEEECCCCcCCccCHH-HccCC-cCCCEEECCCCccCccChhhhcCCc
Confidence 5688888888877665543 366778888888888877644332 23333 3677777777766655555566667
Q ss_pred CCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCC-CchhhccCCcccEEEcCCCccCCCChhhhhCCCCCc----
Q 038106 187 NLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS-IPDSICRLTELYELELGGNKLFGSIPACFSNLASLR---- 261 (349)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---- 261 (349)
+|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 777777777666654444566666777777777666542 356666666777777777666544444444444444
Q ss_pred eEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee
Q 038106 262 ILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 262 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
++++++|.+..++.......+|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 181 ~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred eeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 6666666666654444444466666666666666444445566666666666666553
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=2.1e-25 Score=206.26 Aligned_cols=334 Identities=13% Similarity=0.087 Sum_probs=192.8
Q ss_pred hhccccccEEecCCccccC---cc------------chhhccccccceeeccCceeccccCccccccCCcccEEeccCC-
Q 038106 6 IGNLRNLERLGLGLNKLIG---TV------------PAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGN- 69 (349)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~---~~------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~- 69 (349)
+.++++|++|+++++.... .. ......+++|++|+++++.+.+.....+...+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 5566777888877764211 11 1223356777888887777655555555445777888887777
Q ss_pred cCCCc-cchhhccCCCceEEEccCCccccccccc----ccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCC
Q 038106 70 NFSGT-IPRFIFNASKLSILEFSKNSFSGFIPNT----FGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLS 144 (349)
Q Consensus 70 ~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 144 (349)
.+.+. .+..+..+++|++|++++|.++...+.. ...+++|++|++++|. ..... ..+......+++|++|+++
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~-~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSF-SALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCH-HHHHHHHHHCTTCCEEECC
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCH-HHHHHHHHhCCCCcEEecC
Confidence 33322 2233346777788877777765433222 2356677777777765 11111 1111112345666666666
Q ss_pred CCccccccC-------------------------------------------------CccccC---cccccCeeeecCc
Q 038106 145 NNPLDCILP-------------------------------------------------KTSIGN---LSHSLEDFKMHNC 172 (349)
Q Consensus 145 ~~~~~~~~~-------------------------------------------------~~~~~~---~~~~l~~L~l~~~ 172 (349)
+|......+ ...+.. ..++++.|++++|
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTC
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCC
Confidence 651100000 000000 1246777777777
Q ss_pred ccccCc-chhccCCCCCCEEEcCCccCCCcc-chhccccCCCCeeecCC---------CcCCCCCchhh-ccCCcccEEE
Q 038106 173 NVSGGI-PEEISNLTNLTTIDLGGNMLNGSI-PITLSKLQKLQGLRFED---------NKLEGSIPDSI-CRLTELYELE 240 (349)
Q Consensus 173 ~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~ 240 (349)
.+++.. ...+..+++|++|+++++ +.+.. ......+++|+.|++.+ +.+++.....+ ..+++|+.|.
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 654322 223456777777777766 33222 22223467788887733 23332222222 2477888887
Q ss_pred cCCCccCCCChhhhh-CCCCCceEecC--C----ccCCcC------CcccccCCCccEEEecCCcCCCCCCccccc-ccc
Q 038106 241 LGGNKLFGSIPACFS-NLASLRILSLG--S----NELTSI------PLTFWNLNNILYLNFSSNFFTAPLPLEIGN-LKV 306 (349)
Q Consensus 241 l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~ 306 (349)
+..+.+++.....+. .+++|+.|+++ + +.++.. +..+..+++|++|++++ .+++.....+.. +++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence 766666544444443 57888888888 3 345532 22356778899999977 555434444444 789
Q ss_pred ccEEEccCCeeeeccCccc-ccCCCCceEecCCccccC
Q 038106 307 LVGMDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQG 343 (349)
Q Consensus 307 L~~L~l~~~~~~~~~~~~l-~~~~~L~~l~l~~~~~~~ 343 (349)
|+.|++++|.+.+..+..+ ..+++|++|+|++|++++
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 9999999998876554444 668999999999999853
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=8.3e-23 Score=169.80 Aligned_cols=228 Identities=23% Similarity=0.235 Sum_probs=148.2
Q ss_pred CcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCC
Q 038106 59 PNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSL 138 (349)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L 138 (349)
.++..+++.++.+.+. .....+++|+.|+++++.+... ..+..+++|++|++++|.+...+ .+..+++|
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L 87 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDIS-------ALKELTNL 87 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCCG-------GGTTCTTC
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCch-------hhcCCCCC
Confidence 3444445554444322 2234456666666666665522 33555666666666666554421 24445555
Q ss_pred cEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecC
Q 038106 139 THIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFE 218 (349)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 218 (349)
++|++++|.+. +..+..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 88 ~~L~L~~n~l~--------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 88 TYLILTGNQLQ--------------------------SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp CEEECTTSCCC--------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCccC--------------------------ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 55555555443 2333445677888888888888876666667777888888888
Q ss_pred CCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEecCCcCCCCC
Q 038106 219 DNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTAPL 297 (349)
Q Consensus 219 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~ 297 (349)
+|.+++..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..++. .+..+++|++|++++|++..
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 219 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-- 219 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--
Confidence 888776666667778888888888887776656666777888888888888777543 45677888888888887654
Q ss_pred CccccccccccEEEccCCeeeeccCcccccCCC
Q 038106 298 PLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKN 330 (349)
Q Consensus 298 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 330 (349)
.+++++.+++..|.+.+.+|..++.++.
T Consensus 220 -----~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 -----TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -----CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -----cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 3556777777777777777777666554
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.5e-22 Score=166.54 Aligned_cols=206 Identities=21% Similarity=0.253 Sum_probs=155.0
Q ss_pred CcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCC
Q 038106 59 PNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSL 138 (349)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L 138 (349)
++|++|++++|.+....+..+.++++|++|++++|.+....+..+.++++|++|++++|.+...++. .+..+++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-----AFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-----TTTTCTTC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-----hhcCCccc
Confidence 4677888887777755555677777777787777777665556677777777777777766554432 35566666
Q ss_pred cEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCc-cchhccccCCCCeeec
Q 038106 139 THIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGS-IPITLSKLQKLQGLRF 217 (349)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l 217 (349)
++|++++|.+.. ..+..+..+++|++|++++|.+.+. .+..+..+++|+.|++
T Consensus 103 ~~L~l~~n~l~~--------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 103 QKLVAVETNLAS--------------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CEEECTTSCCCC--------------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cEEECCCCCccc--------------------------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 777666665432 2233467789999999999999863 4778899999999999
Q ss_pred CCCcCCCCCchhhccCCccc----EEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcc-cccCCCccEEEecCCc
Q 038106 218 EDNKLEGSIPDSICRLTELY----ELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLT-FWNLNNILYLNFSSNF 292 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 292 (349)
++|.+++..+..+..+++|+ .|++++|.+....+..+ ...+|++|++++|.++.++.. +..+++|++|++++|+
T Consensus 157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 99999876666777666666 89999999875544444 345899999999999997654 6789999999999999
Q ss_pred CCCC
Q 038106 293 FTAP 296 (349)
Q Consensus 293 ~~~~ 296 (349)
+...
T Consensus 236 ~~c~ 239 (276)
T 2z62_A 236 WDCS 239 (276)
T ss_dssp BCCC
T ss_pred cccc
Confidence 9874
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3.6e-24 Score=185.56 Aligned_cols=259 Identities=19% Similarity=0.201 Sum_probs=155.2
Q ss_pred EEecCCccccCccchhhccccccceeeccCceeccccC----ccccccCC-cccEEeccCCcCCCccchhhccC-----C
Q 038106 14 RLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSIS----SIIDVRLP-NLERLLLWGNNFSGTIPRFIFNA-----S 83 (349)
Q Consensus 14 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~ 83 (349)
++.++.+++++.+|..+...++|++|++++|.+.+..+ ..+ ..++ +|++|++++|.+.+..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAF-ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHH-HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35677888887777777777779999999988855544 333 3677 89999999888876666666554 8
Q ss_pred CceEEEccCCccccccccc----ccCC-CCCCEEEccCCcccCCCccchhcccccC-CCCCcEEeCCCCccccccCCccc
Q 038106 84 KLSILEFSKNSFSGFIPNT----FGNL-RNLQKLRLYDNYLTSSTPELSFLSSLSN-CKSLTHIGLSNNPLDCILPKTSI 157 (349)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~ 157 (349)
+|++|++++|.++...+.. +..+ ++|++|++++|.+...+.. .+...+.. .++|++|++++|.+......
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--- 156 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGNDLGIKSSD--- 156 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTSCGGGSCHH---
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCCcCCHHHHH---
Confidence 8888888888877554443 3344 7888888888877655432 22223334 35777777777766532111
Q ss_pred cCcccccCeeeecCcccccCcchhccCCC-CCCEEEcCCccCCCccchhcc----cc-CCCCeeecCCCcCCCCC----c
Q 038106 158 GNLSHSLEDFKMHNCNVSGGIPEEISNLT-NLTTIDLGGNMLNGSIPITLS----KL-QKLQGLRFEDNKLEGSI----P 227 (349)
Q Consensus 158 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~----~ 227 (349)
.++..+..++ +|++|++++|.+.+..+..+. .. ++|+.|++++|.+++.. +
T Consensus 157 -------------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 157 -------------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp -------------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred -------------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 1112233333 566666666655544333222 22 36666666666555322 2
Q ss_pred hhhcc-CCcccEEEcCCCccCCCChhh----hhCCCCCceEecCCccCCc--------CCcccccCCCccEEEecCCcCC
Q 038106 228 DSICR-LTELYELELGGNKLFGSIPAC----FSNLASLRILSLGSNELTS--------IPLTFWNLNNILYLNFSSNFFT 294 (349)
Q Consensus 228 ~~~~~-~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~L~~L~l~~~~~~ 294 (349)
..+.. .++|++|++++|.+.+..... +..+++|++|++++|.+.. ++..+..+++|++|++++|.+.
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 23333 346666666666665544322 2445667777776666332 2334555666777777777665
Q ss_pred CC
Q 038106 295 AP 296 (349)
Q Consensus 295 ~~ 296 (349)
+.
T Consensus 298 ~~ 299 (362)
T 3goz_A 298 PS 299 (362)
T ss_dssp GG
T ss_pred Cc
Confidence 53
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=6.5e-24 Score=183.91 Aligned_cols=253 Identities=18% Similarity=0.174 Sum_probs=151.3
Q ss_pred eccCceeccccCccccccCCcccEEeccCCcCCCccc----hhhccCC-CceEEEccCCcccccccccccCC-----CCC
Q 038106 40 ELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIP----RFIFNAS-KLSILEFSKNSFSGFIPNTFGNL-----RNL 109 (349)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L 109 (349)
+++.+.+.+..+.... ..++|++|++++|.+.+..+ ..+..++ +|++|++++|.++...+..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4444444333333322 33346666666655554333 3444444 55555555555554333333322 555
Q ss_pred CEEEccCCcccCCCccchhcccccCC-CCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcch----hccC
Q 038106 110 QKLRLYDNYLTSSTPELSFLSSLSNC-KSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPE----EISN 184 (349)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~----~l~~ 184 (349)
++|++++|.+...... .+...+..+ ++|++|++++|. +.+..+. .+..
T Consensus 83 ~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~--------------------------l~~~~~~~l~~~l~~ 135 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSD-ELVKTLAAIPFTITVLDLGWND--------------------------FSSKSSSEFKQAFSN 135 (362)
T ss_dssp CEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSC--------------------------GGGSCHHHHHHHHTT
T ss_pred cEEECcCCcCChHHHH-HHHHHHHhCCCCccEEECcCCc--------------------------CCcHHHHHHHHHHHh
Confidence 5555555554433221 111122223 444555554444 4433322 2334
Q ss_pred -CCCCCEEEcCCccCCCccchh----ccccC-CCCeeecCCCcCCCCCchhh----ccC-CcccEEEcCCCccCCCChh-
Q 038106 185 -LTNLTTIDLGGNMLNGSIPIT----LSKLQ-KLQGLRFEDNKLEGSIPDSI----CRL-TELYELELGGNKLFGSIPA- 252 (349)
Q Consensus 185 -~~~L~~L~l~~~~~~~~~~~~----l~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~~~- 252 (349)
.++|++|++++|.+.+..... +...+ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+....
T Consensus 136 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence 368999999999888544433 34444 89999999999886665444 344 5999999999988764333
Q ss_pred ---hhhC-CCCCceEecCCccCCcC-----CcccccCCCccEEEecCCcCCCCCCc-------cccccccccEEEccCCe
Q 038106 253 ---CFSN-LASLRILSLGSNELTSI-----PLTFWNLNNILYLNFSSNFFTAPLPL-------EIGNLKVLVGMDFSMNN 316 (349)
Q Consensus 253 ---~~~~-~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~ 316 (349)
.+.. .++|++|++++|.+.+. ...+..+++|++|++++|.+...... .+..+++|+.|++++|.
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3444 46899999999988774 33456788999999999985553322 35567889999999998
Q ss_pred eeec
Q 038106 317 FSGV 320 (349)
Q Consensus 317 ~~~~ 320 (349)
+.+.
T Consensus 296 l~~~ 299 (362)
T 3goz_A 296 IHPS 299 (362)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 8765
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=7.7e-25 Score=191.56 Aligned_cols=134 Identities=20% Similarity=0.251 Sum_probs=67.6
Q ss_pred CCCCEEEcCCccCCCc-cc---hhccccCCCCeeecCCCcCCCC-----CchhhccCCcccEEEcCCCccC----CCChh
Q 038106 186 TNLTTIDLGGNMLNGS-IP---ITLSKLQKLQGLRFEDNKLEGS-----IPDSICRLTELYELELGGNKLF----GSIPA 252 (349)
Q Consensus 186 ~~L~~L~l~~~~~~~~-~~---~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~ 252 (349)
++|++|++++|.+... .+ ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+. ...+.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 5666666666666522 22 2344555666666666655421 1114445556666666665543 22334
Q ss_pred hhhCCCCCceEecCCccCCc-----CCcccc--cCCCccEEEecCCcCCC----CCCccc-cccccccEEEccCCeeee
Q 038106 253 CFSNLASLRILSLGSNELTS-----IPLTFW--NLNNILYLNFSSNFFTA----PLPLEI-GNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 253 ~~~~~~~L~~L~l~~~~~~~-----~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~ 319 (349)
.+..+++|++|++++|.+.. ++..+. .+++|++|++++|.+.. ..+..+ .++++|++|++++|.+.+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 44555556666666655544 233332 25555555555555554 133333 334555555555555553
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=7.9e-22 Score=165.14 Aligned_cols=202 Identities=24% Similarity=0.207 Sum_probs=97.3
Q ss_pred ccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhc
Q 038106 103 FGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEI 182 (349)
Q Consensus 103 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l 182 (349)
+.+++++++++++++.+..++.. + .+.++.|++++|.+.. ..+..+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~------~--~~~l~~L~L~~N~l~~--------------------------~~~~~~ 51 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD------L--PKDTTILHLSENLLYT--------------------------FSLATL 51 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC------C--CTTCCEEECTTSCCSE--------------------------EEGGGG
T ss_pred ccccCCccEEECCCCCCCcCCCC------C--CCCCCEEEcCCCcCCc--------------------------cCHHHh
Confidence 44556666666666655554432 1 1455666666655543 333334
Q ss_pred cCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCce
Q 038106 183 SNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRI 262 (349)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 262 (349)
..+++|++|++++|.+.+... ...+++|+.|++++|.+. ..+..+..+++|+.|++++|.+....+..+..+++|++
T Consensus 52 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 52 MPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp TTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 444455555555544442211 134444555555555444 33334444555555555555544433344445555555
Q ss_pred EecCCccCCcCCc-ccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccc
Q 038106 263 LSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 341 (349)
Q Consensus 263 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 341 (349)
|++++|.+..++. .+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .+|..+...++|+.+++++|++
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 5555555544332 2344455555555555555433333444555555555555554 3444444445555555555554
Q ss_pred c
Q 038106 342 Q 342 (349)
Q Consensus 342 ~ 342 (349)
.
T Consensus 208 ~ 208 (290)
T 1p9a_G 208 L 208 (290)
T ss_dssp C
T ss_pred c
Confidence 3
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.9e-23 Score=179.40 Aligned_cols=255 Identities=15% Similarity=0.211 Sum_probs=161.6
Q ss_pred CcccEEeccCCcCCCccchhhccC--CCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCC
Q 038106 59 PNLERLLLWGNNFSGTIPRFIFNA--SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCK 136 (349)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 136 (349)
..+++++++++.+. +..+..+ ++++.++++++.+....+. +..+++|++|++++|.+... .....+..++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~ 118 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS----TLHGILSQCS 118 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH----HHHHHHTTBC
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH----HHHHHHhhCC
Confidence 34788999888765 4455555 7899999999988765444 55689999999998875432 1122466788
Q ss_pred CCcEEeCCCCccccccCCccccCcccccCeeeecCc-ccccC-cchhccCCCCCCEEEcCCc-cCCCc-cchhccccC-C
Q 038106 137 SLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNC-NVSGG-IPEEISNLTNLTTIDLGGN-MLNGS-IPITLSKLQ-K 211 (349)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~ 211 (349)
+|++|++++|.+....+. .+..+ +++++|++++| .+++. .+..+..+++|++|++++| .+.+. .+..+..++ +
T Consensus 119 ~L~~L~L~~~~l~~~~~~-~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVN-TLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp CCSEEECTTCBCCHHHHH-HHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCEEeCcCcccCHHHHH-HHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 899999988877643332 23332 47777777777 45432 4444666777777777777 66543 344556667 7
Q ss_pred CCeeecCCC--cCC-CCCchhhccCCcccEEEcCCCc-cCCCChhhhhCCCCCceEecCCcc-CCc-CCcccccCCCccE
Q 038106 212 LQGLRFEDN--KLE-GSIPDSICRLTELYELELGGNK-LFGSIPACFSNLASLRILSLGSNE-LTS-IPLTFWNLNNILY 285 (349)
Q Consensus 212 L~~L~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~ 285 (349)
|++|++++| .++ +..+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.. ....+..+++|++
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 777777777 333 2344455667777777777776 554555566677777777777774 222 1124556777777
Q ss_pred EEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccc
Q 038106 286 LNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIG 326 (349)
Q Consensus 286 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 326 (349)
|++++| +.+.....+. ..+..|++++|.+++..|..+.
T Consensus 277 L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 277 LQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp EECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred EeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 777777 4432222221 2344456677777766665543
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=3.3e-21 Score=161.40 Aligned_cols=110 Identities=26% Similarity=0.298 Sum_probs=53.3
Q ss_pred CCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEe
Q 038106 185 LTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILS 264 (349)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 264 (349)
+++|++|++++|++.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.......+..+++|+.|+
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 34444444444444433333344444444444444444433333444455555555555554433333444455555555
Q ss_pred cCCccCCcCCcccccCCCccEEEecCCcCC
Q 038106 265 LGSNELTSIPLTFWNLNNILYLNFSSNFFT 294 (349)
Q Consensus 265 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 294 (349)
+++|.+..+|..+...++|+.+++++|++.
T Consensus 179 L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 555555555555555555555555555544
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6.3e-23 Score=176.15 Aligned_cols=254 Identities=17% Similarity=0.191 Sum_probs=143.3
Q ss_pred ccEEecCCccccCccchhhccc--cccceeeccCceeccccCccccccCCcccEEeccCCcCCCc-cchhhccCCCceEE
Q 038106 12 LERLGLGLNKLIGTVPAAIFNV--STLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGT-IPRFIFNASKLSIL 88 (349)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 88 (349)
++.++++++.+. +..+..+ +.++.|+++++.+.+..+. .. .+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 566666665543 3444444 5666666666666444333 22 566666776666665533 44555666666666
Q ss_pred EccCCcccccccccccCCCCCCEEEccCC-cccCCCccchhcccccCCCCCcEEeCCCC-ccccccCCccccCcccccCe
Q 038106 89 EFSKNSFSGFIPNTFGNLRNLQKLRLYDN-YLTSSTPELSFLSSLSNCKSLTHIGLSNN-PLDCILPKTSIGNLSHSLED 166 (349)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~ 166 (349)
++++|.++...+..+..+++|++|++++| .+... .+...+..+++|++|++++| .+...
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----~l~~~~~~~~~L~~L~l~~~~~l~~~--------------- 184 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----ALQTLLSSCSRLDELNLSWCFDFTEK--------------- 184 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----HHHHHHHHCTTCCEEECCCCTTCCHH---------------
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----HHHHHHhcCCCCCEEcCCCCCCcChH---------------
Confidence 66666665545555666666666666666 23211 01112444556666666665 44321
Q ss_pred eeecCcccccCcchhccCCC-CCCEEEcCCc--cCC-CccchhccccCCCCeeecCCCc-CCCCCchhhccCCcccEEEc
Q 038106 167 FKMHNCNVSGGIPEEISNLT-NLTTIDLGGN--MLN-GSIPITLSKLQKLQGLRFEDNK-LEGSIPDSICRLTELYELEL 241 (349)
Q Consensus 167 L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 241 (349)
..+..+..++ +|++|++++| .+. ...+..+..+++|+.|++++|. +++..+..+..+++|++|++
T Consensus 185 ----------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 185 ----------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp ----------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred ----------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 1233455566 7777777776 333 2334455566777777777776 55555556667777777777
Q ss_pred CCCc-cCCCChhhhhCCCCCceEecCCccCCcCCcccccC-CCccEEEecCCcCCCCCCcccc
Q 038106 242 GGNK-LFGSIPACFSNLASLRILSLGSNELTSIPLTFWNL-NNILYLNFSSNFFTAPLPLEIG 302 (349)
Q Consensus 242 ~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~ 302 (349)
++|. +.+.....+..+++|++|++++| +..- .+..+ ..++.|++++|.+++..+..+.
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 7773 32232335666777777777777 3321 11111 2355555777777775555443
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.5e-23 Score=183.45 Aligned_cols=250 Identities=20% Similarity=0.221 Sum_probs=140.6
Q ss_pred ccchhhccccccceeeccCceeccccCccc---cccCCcccEEeccCCcCC---Cccchhh-------ccCCCceEEEcc
Q 038106 25 TVPAAIFNVSTLKSLELQDNSLFGSISSII---DVRLPNLERLLLWGNNFS---GTIPRFI-------FNASKLSILEFS 91 (349)
Q Consensus 25 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~---~~~~~~~-------~~~~~L~~L~l~ 91 (349)
.++..+..+++|++|++++|.+....+..+ +..+++|++|++++|.+. +..|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455566667777777777776644332221 225677777777765332 2223332 466777777777
Q ss_pred CCcccc----cccccccCCCCCCEEEccCCcccCCCccchhcccccCC---------CCCcEEeCCCCccccccCCcccc
Q 038106 92 KNSFSG----FIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNC---------KSLTHIGLSNNPLDCILPKTSIG 158 (349)
Q Consensus 92 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~---------~~L~~L~l~~~~~~~~~~~~~~~ 158 (349)
+|.+.. .++..+..+++|++|++++|.+...... .+...+..+ ++|++|++++|.+......
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~---- 177 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK---- 177 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH----
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH----
Confidence 777664 2444566677777777777765432211 111223333 7788888887776521100
Q ss_pred CcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCc-----cchhccccCCCCeeecCCCcCC----CCCchh
Q 038106 159 NLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGS-----IPITLSKLQKLQGLRFEDNKLE----GSIPDS 229 (349)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~----~~~~~~ 229 (349)
.+...+..+++|++|++++|.+... .+..+..+++|+.|++++|.++ ...+..
T Consensus 178 ------------------~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 178 ------------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp ------------------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred ------------------HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 0112344455666666666655421 1114455566666666666553 234455
Q ss_pred hccCCcccEEEcCCCccCCC----ChhhhhC--CCCCceEecCCccCCc-----CCccc-ccCCCccEEEecCCcCCCCC
Q 038106 230 ICRLTELYELELGGNKLFGS----IPACFSN--LASLRILSLGSNELTS-----IPLTF-WNLNNILYLNFSSNFFTAPL 297 (349)
Q Consensus 230 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~--~~~L~~L~l~~~~~~~-----~~~~~-~~~~~L~~L~l~~~~~~~~~ 297 (349)
+..+++|++|++++|.+.+. .+..+.. +++|++|++++|.+.. ++..+ ..+++|++|++++|.+.+..
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 56666666777766665533 2233322 6677777777777666 55555 34677777777777776644
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=9.6e-21 Score=157.21 Aligned_cols=112 Identities=29% Similarity=0.387 Sum_probs=55.2
Q ss_pred CCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceE
Q 038106 184 NLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRIL 263 (349)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 263 (349)
.+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 33444444444444443333334444444444444444443333334455555555555555544444445555555555
Q ss_pred ecCCccCCcCCc-ccccCCCccEEEecCCcCCC
Q 038106 264 SLGSNELTSIPL-TFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 264 ~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 295 (349)
++++|.+..++. .+..+++|+.|++++|++..
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 555555555433 24455566666666665543
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=5.5e-21 Score=158.79 Aligned_cols=205 Identities=23% Similarity=0.249 Sum_probs=173.4
Q ss_pred ccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCC
Q 038106 132 LSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQK 211 (349)
Q Consensus 132 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 211 (349)
...+++|+.|++.++.+.... .+..+ +++++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~---~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ---GIQYL-PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT---TGGGC-TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccceeeeeeCCCCccccc---ccccC-CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 556789999999999876432 23333 4899999999998753 36888999999999999998777777888999
Q ss_pred CCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEecC
Q 038106 212 LQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSS 290 (349)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 290 (349)
|+.|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 9999999999987777778899999999999999887766777889999999999999998654 467889999999999
Q ss_pred CcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCCCCC
Q 038106 291 NFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349 (349)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~ 349 (349)
|.+.+..+..+..+++|+.|++++|.+.+ .+++|+.++++.|.++|.+|.++
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTT
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcc
Confidence 99998777678889999999999997753 46789999999999999998764
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=8.1e-21 Score=155.89 Aligned_cols=178 Identities=25% Similarity=0.321 Sum_probs=111.2
Q ss_pred CCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeee
Q 038106 137 SLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLR 216 (349)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 216 (349)
..++++++++.+... |. .++..++.|+++++.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 15 ~~~~l~~~~~~l~~~-p~----~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDSV-PS----GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSSC-CS----CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcccc-CC----CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 456677777666532 21 2234666777777776665555666667777777777766655555566666677777
Q ss_pred cCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEecCCcCCC
Q 038106 217 FEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 217 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 295 (349)
+++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 77666665555556666666666666666655444445666666666666666666544 45566666666666666666
Q ss_pred CCCccccccccccEEEccCCeeee
Q 038106 296 PLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 296 ~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
..+..+..+++|+.|++++|.+..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 444455666666666666666553
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1e-20 Score=159.87 Aligned_cols=195 Identities=19% Similarity=0.337 Sum_probs=144.0
Q ss_pred ccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhc
Q 038106 103 FGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEI 182 (349)
Q Consensus 103 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l 182 (349)
...+++|++|++++|.+...+ .+..+++|+.|++++|.+....+ +..+ +++++|++++|.+.+. ..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-------~~~~l~~L~~L~L~~n~i~~~~~---~~~l-~~L~~L~L~~n~l~~~--~~~ 103 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-------GVQYLNNLIGLELKDNQITDLAP---LKNL-TKITELELSGNPLKNV--SAI 103 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG---GTTC-CSCCEEECCSCCCSCC--GGG
T ss_pred HHHcCCcCEEEeeCCCccCch-------hhhccCCCCEEEccCCcCCCChh---HccC-CCCCEEEccCCcCCCc--hhh
Confidence 345788999999999877654 36678899999999998865433 3333 3788888888887653 247
Q ss_pred cCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCce
Q 038106 183 SNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRI 262 (349)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 262 (349)
..+++|++|++++|.+.+. + .+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.
T Consensus 104 ~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177 (308)
T ss_dssp TTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred cCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCE
Confidence 7788888888888887743 2 36777888888888887774432 6777888888888887764322 677888888
Q ss_pred EecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee
Q 038106 263 LSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 263 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
|++++|.+..++. +..+++|++|++++|.+.+.. .+..+++|+.|++++|.+.+
T Consensus 178 L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 178 LKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred EECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 8888888877664 667788888888888877633 36777888888888887764
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=159.96 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=60.4
Q ss_pred cCCcccEEEcCCCccCCCCh--h-hhhCCCCCceEecCCccCCcC-CcccccC---CCccEEEecCCcCCCCCCcccccc
Q 038106 232 RLTELYELELGGNKLFGSIP--A-CFSNLASLRILSLGSNELTSI-PLTFWNL---NNILYLNFSSNFFTAPLPLEIGNL 304 (349)
Q Consensus 232 ~~~~L~~L~l~~~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~ 304 (349)
.+++|++|++++|.+..... . .+..+++|++|++++|.+... |..+..+ ++|++|++++|.+.. .+..+.
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~-- 271 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP-- 271 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--
Confidence 34445555555554431111 1 134456666666666666553 4444433 567777777776664 344332
Q ss_pred ccccEEEccCCeeeeccCcccccCCCCceEecCCccccC
Q 038106 305 KVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 343 (349)
Q Consensus 305 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 343 (349)
++|+.|++++|.+.+. |. +..+++|+.|++++|+++.
T Consensus 272 ~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 6777777777777642 22 4666777778888777753
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=164.19 Aligned_cols=229 Identities=18% Similarity=0.187 Sum_probs=149.0
Q ss_pred CCcccEEeccCCcCCCccchh---hccCCCceEEEccCCcccccccccc--cCCCCCCEEEccCCcccCCCccchhcccc
Q 038106 58 LPNLERLLLWGNNFSGTIPRF---IFNASKLSILEFSKNSFSGFIPNTF--GNLRNLQKLRLYDNYLTSSTPELSFLSSL 132 (349)
Q Consensus 58 l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l 132 (349)
...++.+.+.++.+.+..... +..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+.... ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~-~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE-LQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH-HHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH-HHh
Confidence 345778888877665322211 2234679999999999887777776 8889999999999988764332111 123
Q ss_pred cCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCc--c--chhccc
Q 038106 133 SNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGS--I--PITLSK 208 (349)
Q Consensus 133 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~--~~~l~~ 208 (349)
..+++|++|++++|.+.... +..+..+++|++|++++|.+.+. . ...+..
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~--------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFS--------------------------CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCC--------------------------TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred hhccCCCEEEeeCCCcchhh--------------------------HHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 46889999999998875332 22345566666777766665421 1 112245
Q ss_pred cCCCCeeecCCCcCCCCCch----hhccCCcccEEEcCCCccCCCChhhhhCC---CCCceEecCCccCCcCCcccccCC
Q 038106 209 LQKLQGLRFEDNKLEGSIPD----SICRLTELYELELGGNKLFGSIPACFSNL---ASLRILSLGSNELTSIPLTFWNLN 281 (349)
Q Consensus 209 ~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~ 281 (349)
+++|++|++++|.++. .+. .+..+++|++|++++|.+.+..+..+..+ ++|++|++++|+++.+|..+. +
T Consensus 196 l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~ 272 (310)
T 4glp_A 196 FPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--A 272 (310)
T ss_dssp SCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--S
T ss_pred CCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--C
Confidence 5667777777776652 222 23566777777777777665545444444 577888888887777766553 6
Q ss_pred CccEEEecCCcCCCCCCccccccccccEEEccCCeee
Q 038106 282 NILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 318 (349)
+|++|++++|.+.+. +. +..+++|+.|++++|.+.
T Consensus 273 ~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 273 KLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 788888888877763 22 456777888888888765
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.9e-20 Score=155.28 Aligned_cols=88 Identities=30% Similarity=0.501 Sum_probs=52.8
Q ss_pred ccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCc
Q 038106 182 ISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLR 261 (349)
Q Consensus 182 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 261 (349)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+.. .+..+++|+
T Consensus 147 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~ 220 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLF 220 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCC
T ss_pred ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCC
Confidence 4556667777777776653222 5566667777777666653322 556666666666666665332 255666666
Q ss_pred eEecCCccCCcCCc
Q 038106 262 ILSLGSNELTSIPL 275 (349)
Q Consensus 262 ~L~l~~~~~~~~~~ 275 (349)
.|++++|++...+.
T Consensus 221 ~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 221 IVTLTNQTITNQPV 234 (308)
T ss_dssp EEEEEEEEEECCCE
T ss_pred EEEccCCeeecCCe
Confidence 66666666655443
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=8.5e-20 Score=149.81 Aligned_cols=180 Identities=23% Similarity=0.283 Sum_probs=139.9
Q ss_pred CCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCC
Q 038106 107 RNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLT 186 (349)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~ 186 (349)
...++++++++.+..++.. + .+.++.|+++++.+....+. .+..+ +++++|++++|.+.+..+..+..++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~------~--~~~l~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG------I--PADTEKLDLQSTGLATLSDA-TFRGL-TKLTWLNLDYNQLQTLSAGVFDDLT 83 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC------C--CTTCCEEECTTSCCCCCCTT-TTTTC-TTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCeEEecCCCCccccCCC------C--CCCCCEEEccCCCcCccCHh-HhcCc-ccCCEEECCCCcCCccCHhHhccCC
Confidence 3567788888877776643 2 25788888888888755443 34444 3788888888888877777778888
Q ss_pred CCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecC
Q 038106 187 NLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLG 266 (349)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 266 (349)
+|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 88899988888886666677788888899998888886666667888888899998888876666677888888899998
Q ss_pred CccCCcCCc-ccccCCCccEEEecCCcCCCC
Q 038106 267 SNELTSIPL-TFWNLNNILYLNFSSNFFTAP 296 (349)
Q Consensus 267 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~ 296 (349)
+|.+..++. .+..+++|++|++++|++...
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 888888654 577788888999988888764
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.2e-20 Score=152.20 Aligned_cols=198 Identities=22% Similarity=0.224 Sum_probs=129.1
Q ss_pred CCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCc-cccccCCccccCcccccCeeeecCcccccCcchhccCC
Q 038106 107 RNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNP-LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNL 185 (349)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~ 185 (349)
+++++|++++|.+...++. .+..+++|++|++++|. +.. ..+..+..+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~-----~~~~l~~L~~L~l~~n~~l~~--------------------------i~~~~f~~l 79 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH-----AFSNLPNISRIYVSIDVTLQQ--------------------------LESHSFYNL 79 (239)
T ss_dssp TTCCEEEEESCCCSEECTT-----TTTTCTTCCEEEEECCSSCCE--------------------------ECTTTEESC
T ss_pred CcccEEEEeCCcceEECHH-----HccCCCCCcEEeCCCCCCcce--------------------------eCHhHcCCC
Confidence 3566666666666554432 24555666666666654 332 223345566
Q ss_pred CCCCEEEcCC-ccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCccc---EEEcCCC-ccCCCChhhhhCCCCC
Q 038106 186 TNLTTIDLGG-NMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELY---ELELGGN-KLFGSIPACFSNLASL 260 (349)
Q Consensus 186 ~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L 260 (349)
++|++|++++ |.+.+..+..|..+++|+.|++++|.+++ .|. +..+++|+ .|++++| .+....+..+..+++|
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence 6777777766 66664444556666777777777776664 333 55666666 7888777 6665555567778888
Q ss_pred c-eEecCCccCCcCCcccccCCCccEEEecCCc-CCCCCCcccccc-ccccEEEccCCeeeeccCcccccCCCCceEecC
Q 038106 261 R-ILSLGSNELTSIPLTFWNLNNILYLNFSSNF-FTAPLPLEIGNL-KVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLG 337 (349)
Q Consensus 261 ~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~ 337 (349)
+ +|++++|+++.++......++|++|++++|. +....+..+..+ ++|+.|++++|.+.+ +|.. .+++|+.|+++
T Consensus 158 ~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 158 TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIAR 234 (239)
T ss_dssp EEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECT
T ss_pred eeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeecc
Confidence 8 8888888887766544344788888888884 776555667777 888888888888874 4433 56788888887
Q ss_pred Ccc
Q 038106 338 YNR 340 (349)
Q Consensus 338 ~~~ 340 (349)
++.
T Consensus 235 ~~~ 237 (239)
T 2xwt_C 235 NTW 237 (239)
T ss_dssp TC-
T ss_pred Ccc
Confidence 764
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.8e-20 Score=152.81 Aligned_cols=183 Identities=21% Similarity=0.229 Sum_probs=153.4
Q ss_pred ccccCeeeecCcccccCcchhccCCCCCCEEEcCCcc-CCCccchhccccCCCCeeecCC-CcCCCCCchhhccCCcccE
Q 038106 161 SHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNM-LNGSIPITLSKLQKLQGLRFED-NKLEGSIPDSICRLTELYE 238 (349)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~ 238 (349)
+.+++.|+++++.+....+..+..+++|++|++++|. +.+..+..|..+++|+.|++++ |.+++..+..+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4578888888888886666678899999999999997 7755666888999999999998 8888666678899999999
Q ss_pred EEcCCCccCCCChhhhhCCCCCc---eEecCCc-cCCcCCc-ccccCCCcc-EEEecCCcCCCCCCccccccccccEEEc
Q 038106 239 LELGGNKLFGSIPACFSNLASLR---ILSLGSN-ELTSIPL-TFWNLNNIL-YLNFSSNFFTAPLPLEIGNLKVLVGMDF 312 (349)
Q Consensus 239 L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l 312 (349)
|++++|.+.. .+. +..+++|+ +|++++| .+..++. .+..+++|+ +|++++|.+.......+.. ++|+.|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 9999998875 444 77888888 9999999 8988765 588899999 9999999998644444544 89999999
Q ss_pred cCCe-eeeccCcccccC-CCCceEecCCccccCCCC
Q 038106 313 SMNN-FSGVIPTEIGGL-KNLEYLFLGYNRLQGSIP 346 (349)
Q Consensus 313 ~~~~-~~~~~~~~l~~~-~~L~~l~l~~~~~~~~~p 346 (349)
++|. +....+..+..+ ++|+.|++++|++++..+
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 9995 886667788899 999999999999985433
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.6e-19 Score=143.81 Aligned_cols=171 Identities=25% Similarity=0.268 Sum_probs=116.1
Q ss_pred cccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEc
Q 038106 162 HSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELEL 241 (349)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 241 (349)
+++++|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35566666666655444455667777888888777777555555667777788888777777555555677777888888
Q ss_pred CCCccCCCChhhhhCCCCCceEecCCccCCcCCcc-cccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeec
Q 038106 242 GGNKLFGSIPACFSNLASLRILSLGSNELTSIPLT-FWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGV 320 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 320 (349)
++|.+....+..+..+++|++|++++|.++.++.. +..+++|++|++++|++.. .+++|+.|++..|.+.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 77777655555567777788888887777775543 5667778888887776554 345677777777777777
Q ss_pred cCcccccCCCCceEecCCccccC
Q 038106 321 IPTEIGGLKNLEYLFLGYNRLQG 343 (349)
Q Consensus 321 ~~~~l~~~~~L~~l~l~~~~~~~ 343 (349)
+|..++.++. ++..|...+
T Consensus 181 ip~~~~~l~~----~~~~C~~~~ 199 (208)
T 2o6s_A 181 VRNSAGSVAP----DSAKCSGSG 199 (208)
T ss_dssp BBCTTSSBCT----TCSBBTTTC
T ss_pred eeccCccccC----CccccccCC
Confidence 7777666654 444444433
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.4e-19 Score=141.98 Aligned_cols=175 Identities=23% Similarity=0.228 Sum_probs=145.4
Q ss_pred CeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCC
Q 038106 165 EDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGN 244 (349)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 244 (349)
+.++..++.++. +|.. ..+++++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 344555554442 2222 2468999999999998766667889999999999999998776677889999999999999
Q ss_pred ccCCCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCc
Q 038106 245 KLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPT 323 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 323 (349)
.+....+..+..+++|++|++++|.+..++. .+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 9887666678899999999999999998765 4688999999999999999866666888999999999999665
Q ss_pred ccccCCCCceEecCCccccCCCCCCC
Q 038106 324 EIGGLKNLEYLFLGYNRLQGSIPDSF 349 (349)
Q Consensus 324 ~l~~~~~L~~l~l~~~~~~~~~p~~~ 349 (349)
..++.|++++++.|+++|.+|+++
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTT
T ss_pred --cCCCCHHHHHHHHHhCCceeeccC
Confidence 356889999999999999999764
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2.4e-18 Score=144.08 Aligned_cols=173 Identities=24% Similarity=0.334 Sum_probs=126.1
Q ss_pred ccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCC
Q 038106 132 LSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQK 211 (349)
Q Consensus 132 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 211 (349)
...+++|+.|+++++.+.... .+..+ ++++.|++++|.+.+..+ +..+++|++|++++|.+.+ . ..+..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~---~~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ---GIQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT---TGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTT
T ss_pred hhhcCcccEEEccCCCcccCh---hHhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCC
Confidence 445678899999888876542 23332 478888888888775443 7778888888888887764 2 23677788
Q ss_pred CCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCC
Q 038106 212 LQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSN 291 (349)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 291 (349)
|+.|++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+..++. +..+++|++|++++|
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCC
Confidence 88888888877743 4567778888888888877644 567778888888888888877654 677788888888888
Q ss_pred cCCCCCCccccccccccEEEccCCeeee
Q 038106 292 FFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
.+.+. + .+..+++|+.|++++|.+..
T Consensus 189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77763 2 36777888888888887764
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=3.9e-18 Score=146.85 Aligned_cols=247 Identities=17% Similarity=0.096 Sum_probs=168.0
Q ss_pred hhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccc-hhhccCCC
Q 038106 6 IGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIP-RFIFNASK 84 (349)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~ 84 (349)
+..|.. ++++.++++++ .+|..+ .+++++|++++|.+. .++...+..+++|++|++++|.+....+ ..|.++++
T Consensus 6 ~C~C~~-~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 6 ICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp SSEEET-TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred ccEeeC-CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 344543 67777777776 566544 357999999999984 4444444589999999999998765444 45677877
Q ss_pred ceE-EEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccc
Q 038106 85 LSI-LEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHS 163 (349)
Q Consensus 85 L~~-L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 163 (349)
+.+ +.+..+.+....+..+..+++|++|++++|.+...++. .+....++..+++.++......+...+......
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~-----~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-----HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC-----TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCch-----hhcccchhhhhhhccccccccccccchhhcchh
Confidence 765 45566788877778899999999999999988776644 234455677888765433333444455555557
Q ss_pred cCeeeecCcccccCcchhccCCCCCCEEEcCC-ccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcC
Q 038106 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGG-NMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELG 242 (349)
Q Consensus 164 l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 242 (349)
++.|++++|.+....+. .....+++++++.+ |.+.......|..+++|+.|++++|.++...+. .+.+|+.|...
T Consensus 156 l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l 231 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRAR 231 (350)
T ss_dssp CEEEECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECT
T ss_pred hhhhccccccccCCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhc
Confidence 78888888888754333 33456788888864 555544455677888888888888888744332 34556666655
Q ss_pred CCccCCCChhhhhCCCCCceEecCC
Q 038106 243 GNKLFGSIPACFSNLASLRILSLGS 267 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (349)
++......+ .+..+++|+.+++.+
T Consensus 232 ~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 232 STYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred cCCCcCcCC-CchhCcChhhCcCCC
Confidence 554333444 366778888888865
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.9e-18 Score=155.34 Aligned_cols=188 Identities=24% Similarity=0.329 Sum_probs=137.7
Q ss_pred CCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCC
Q 038106 107 RNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLT 186 (349)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~ 186 (349)
.+++.|++++|.+..++.. + .++|+.|++++|.+... + ...++++.|++++|.++. ++. +..
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~------l--~~~L~~L~Ls~N~l~~i-p-----~~l~~L~~L~Ls~N~l~~-ip~-l~~-- 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN------L--PPQITVLEITQNALISL-P-----ELPASLEYLDACDNRLST-LPE-LPA-- 120 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC------C--CTTCSEEECCSSCCSCC-C-----CCCTTCCEEECCSSCCSC-CCC-CCT--
T ss_pred CCccEEEeCCCCCCccCHh------H--cCCCCEEECcCCCCccc-c-----cccCCCCEEEccCCCCCC-cch-hhc--
Confidence 3899999999988876543 2 36799999999988743 3 234588888888888876 444 443
Q ss_pred CCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecC
Q 038106 187 NLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLG 266 (349)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 266 (349)
+|++|++++|.+.+ ++. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+.. .+. +. ++|+.|+++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 88888888888875 333 56788888888888875 443 56788888888888765 344 44 788888888
Q ss_pred CccCCcCCcccccCCCc-------cEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccC
Q 038106 267 SNELTSIPLTFWNLNNI-------LYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGL 328 (349)
Q Consensus 267 ~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 328 (349)
+|.++.+|. +.. +| +.|++++|.+.. ++..+..+++|+.|++++|.+.+..|..+..+
T Consensus 189 ~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 189 TNLLESLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSCCSSCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCCCchhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 888888776 443 66 888888888886 66666678888888888888877766666554
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4e-18 Score=136.70 Aligned_cols=151 Identities=24% Similarity=0.333 Sum_probs=94.2
Q ss_pred CeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCC
Q 038106 165 EDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGN 244 (349)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 244 (349)
+.++.+++.++. +|..+. +++++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 455555555553 232222 46677777777666544455666667777777777666555666666677777777776
Q ss_pred ccCCCChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeee
Q 038106 245 KLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 318 (349)
.+.......+..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66655444556666677777777666664 445666666777777776666655555666666666777666654
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=3.6e-18 Score=147.06 Aligned_cols=242 Identities=19% Similarity=0.184 Sum_probs=166.7
Q ss_pred cEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcE-
Q 038106 62 ERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTH- 140 (349)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~- 140 (349)
++++.+++.++ ..|..+ .+++++|++++|.++...+..|.++++|++|++++|.+....+. ..+.++++++.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA----DVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT----TSBCSCTTCCEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh----hHhhcchhhhhh
Confidence 56777777777 556655 46899999999999876667889999999999999987543222 14667777765
Q ss_pred EeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCC-ccCCCccchhcccc-CCCCeeecC
Q 038106 141 IGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGG-NMLNGSIPITLSKL-QKLQGLRFE 218 (349)
Q Consensus 141 L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~ 218 (349)
+.+.++.+....+. .+..++ +|+++++++|.+....+..+....++..+++.+ +.+.......+... ..++.|+++
T Consensus 85 l~~~~N~l~~l~~~-~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 85 RIEKANNLLYINPE-AFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEETTCCEECTT-SBCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred hcccCCcccccCch-hhhhcc-ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 45556676654333 444443 788999998888765555555556677787755 45553344445554 357888899
Q ss_pred CCcCCCCCchhhccCCcccEEEcCC-CccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCC
Q 038106 219 DNKLEGSIPDSICRLTELYELELGG-NKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPL 297 (349)
Q Consensus 219 ~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 297 (349)
+|.++...+ ......+|+++++.+ +.+.......+..+++|++|++++|+++.+|.. .+.+|+.|.+.++.-....
T Consensus 163 ~N~i~~i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 163 KNGIQEIHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp SSCCCEECT-TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCC
T ss_pred cccccCCCh-hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcC
Confidence 888874333 333456788888875 455544455678888999999999988888753 3567777777766544434
Q ss_pred CccccccccccEEEccCCe
Q 038106 298 PLEIGNLKVLVGMDFSMNN 316 (349)
Q Consensus 298 ~~~~~~~~~L~~L~l~~~~ 316 (349)
| .+..+++|+.+++.++.
T Consensus 240 P-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 240 P-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp C-CTTTCCSCCEEECSCHH
T ss_pred C-CchhCcChhhCcCCCCc
Confidence 4 46778888888887653
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2.1e-17 Score=151.37 Aligned_cols=174 Identities=24% Similarity=0.329 Sum_probs=127.3
Q ss_pred ccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCC
Q 038106 132 LSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQK 211 (349)
Q Consensus 132 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 211 (349)
...+++|+.|+++++.+.... .+..+ ++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ . ..+..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~---~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ---GIQYL-PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT---TGGGC-TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTT
T ss_pred hhcCCCCCEEECcCCCCCCCh---HHccC-CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCC
Confidence 445678888888888876442 23333 478888888888775444 7778888888888887763 2 25677788
Q ss_pred CCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCC
Q 038106 212 LQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSN 291 (349)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 291 (349)
|+.|++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+..++. +..+++|++|++++|
T Consensus 111 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC
Confidence 88888888877742 4567788888888888877644 567778888888888888877654 677788888888888
Q ss_pred cCCCCCCccccccccccEEEccCCeeeec
Q 038106 292 FFTAPLPLEIGNLKVLVGMDFSMNNFSGV 320 (349)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 320 (349)
.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 87763 3567778888888888877653
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.3e-17 Score=139.70 Aligned_cols=190 Identities=22% Similarity=0.283 Sum_probs=153.3
Q ss_pred EEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCe
Q 038106 87 ILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLED 166 (349)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 166 (349)
.+.+....+... ..+..+++|+.|++++|.+...+ .+..+++|++|++++|.+....+ +..+ ++++.
T Consensus 28 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~-------~~~~l~~L~~L~L~~n~l~~~~~---l~~l-~~L~~ 94 (291)
T 1h6t_A 28 KDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTDIKP---LANL-KNLGW 94 (291)
T ss_dssp HHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG---GTTC-TTCCE
T ss_pred HHHhcCCCcccc--cchhhcCcccEEEccCCCcccCh-------hHhcCCCCCEEEccCCccCCCcc---cccC-CCCCE
Confidence 334455444422 23456789999999999887663 36778999999999999876543 3333 48999
Q ss_pred eeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCcc
Q 038106 167 FKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKL 246 (349)
Q Consensus 167 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 246 (349)
|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+
T Consensus 95 L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 95 LFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 99999998753 3488999999999999998853 4677889999999999999854 5788999999999999998
Q ss_pred CCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCC
Q 038106 247 FGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLP 298 (349)
Q Consensus 247 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 298 (349)
.+..+ +..+++|+.|++++|.+++++. +..+++|+.|++++|++.....
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred ccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence 75543 8899999999999999999864 7889999999999999887433
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=8.2e-18 Score=134.89 Aligned_cols=153 Identities=24% Similarity=0.289 Sum_probs=101.8
Q ss_pred cCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccc-hhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcC
Q 038106 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIP-ITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELG 242 (349)
Q Consensus 164 l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 242 (349)
-+.++++++.++. +|..+ .+.+++|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3467777776663 33322 2345677777777764422 346667777777777777765555567777777777777
Q ss_pred CCccCCCChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee
Q 038106 243 GNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
+|.+....+..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 7777666666667777777777777777764 4556667777777777777776556666677777777777776653
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2.3e-17 Score=133.20 Aligned_cols=154 Identities=23% Similarity=0.221 Sum_probs=109.9
Q ss_pred ccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcC
Q 038106 163 SLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELG 242 (349)
Q Consensus 163 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 242 (349)
..+.++.+++.+.. +|..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 45566666666553 33322 3677888888887776666677777788888888887765555566777788888888
Q ss_pred CCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee
Q 038106 243 GNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
+|.+....+..+..+++|++|++++|.+..+|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 87777655556677778888888888777777777777778888888877776555556777777888887777653
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.4e-17 Score=131.24 Aligned_cols=152 Identities=17% Similarity=0.242 Sum_probs=87.5
Q ss_pred CCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceE
Q 038106 184 NLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRIL 263 (349)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 263 (349)
.+++|++|+++++.+. ..+ .+..+++|+.|++++|.+. .+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445566666665555 222 3455556666666666443 22345556666666666666554445555666666666
Q ss_pred ecCCccCCc-CCcccccCCCccEEEecCCc-CCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccc
Q 038106 264 SLGSNELTS-IPLTFWNLNNILYLNFSSNF-FTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 341 (349)
Q Consensus 264 ~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 341 (349)
++++|.+.. .+..+..+++|++|++++|. +.+ .+ .+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 666666665 44455566666666666665 443 33 45666777777777776664 22 566667777777777776
Q ss_pred cC
Q 038106 342 QG 343 (349)
Q Consensus 342 ~~ 343 (349)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 53
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=8.7e-18 Score=132.48 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=129.8
Q ss_pred cccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEc
Q 038106 162 HSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELEL 241 (349)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 241 (349)
++++.|+++++.+.. ++ .+..+++|++|++++|.+. ....+..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 489999999999883 44 5888999999999999765 2346788999999999999998767788899999999999
Q ss_pred CCCccCCCChhhhhCCCCCceEecCCcc-CCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee
Q 038106 242 GGNKLFGSIPACFSNLASLRILSLGSNE-LTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
++|.+.+..+..+..+++|++|++++|. +.+++ .+..+++|++|++++|.+.+ .+ .+..+++|+.|++++|.+.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9999987778889999999999999998 88887 68889999999999999987 33 67889999999999998753
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=144.55 Aligned_cols=175 Identities=22% Similarity=0.234 Sum_probs=126.0
Q ss_pred cEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhcc-CCCCCCEEEcCCccCCCccchhccccCCCCeeec
Q 038106 139 THIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEIS-NLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRF 217 (349)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 217 (349)
+.++.+++.+... |. .++..++.|++++|.++...+..+. .+++|++|++++|.+.+..+..|..+++|+.|++
T Consensus 21 ~~l~c~~~~l~~i-P~----~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQ----SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSC-CS----SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCcc-Cc----cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 5677777776542 22 2345678888888888766666565 7788888888888887666666777788888888
Q ss_pred CCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCccc----ccCCCccEEEecCCcC
Q 038106 218 EDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTF----WNLNNILYLNFSSNFF 293 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~ 293 (349)
++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..++... ..+++|++|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 888877655666777888888888888777666667777888888888888887776543 4577888888888887
Q ss_pred CCCCCcccccccc--ccEEEccCCeee
Q 038106 294 TAPLPLEIGNLKV--LVGMDFSMNNFS 318 (349)
Q Consensus 294 ~~~~~~~~~~~~~--L~~L~l~~~~~~ 318 (349)
.......+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 7755455666665 367788887765
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=9.9e-17 Score=129.45 Aligned_cols=154 Identities=24% Similarity=0.269 Sum_probs=127.5
Q ss_pred CCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeee
Q 038106 137 SLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLR 216 (349)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 216 (349)
..+.++.+++.+..... .++.+++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+
T Consensus 20 s~~~v~c~~~~l~~ip~-----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA-----GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCSSCCS-----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcCccCC-----CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 46778888877754322 2346899999999999987788888999999999999998766666778889999999
Q ss_pred cCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEecCCcCCC
Q 038106 217 FEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 217 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 295 (349)
+++|.+++..+..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+..++. .+..+++|++|++++|++..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999998776777888999999999999887 556777889999999999999988764 57788999999999998876
Q ss_pred C
Q 038106 296 P 296 (349)
Q Consensus 296 ~ 296 (349)
.
T Consensus 174 ~ 174 (229)
T 3e6j_A 174 E 174 (229)
T ss_dssp T
T ss_pred C
Confidence 4
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.4e-17 Score=137.27 Aligned_cols=168 Identities=24% Similarity=0.301 Sum_probs=101.0
Q ss_pred CCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCee
Q 038106 136 KSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGL 215 (349)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 215 (349)
.++..++++.+.+..... +..+ .+++.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|+.|
T Consensus 19 ~~l~~l~l~~~~i~~~~~---~~~l-~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVS---QKEL-SGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHTCSCTTSEEC---HHHH-TTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHhcCCCcccccc---hhhc-CcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 344555566655543321 1122 3667777777766532 2 45666777777777776664333 6666777777
Q ss_pred ecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCC
Q 038106 216 RFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 295 (349)
++++|.+++. +. +.. ++|+.|++++|.+... ..+..+++|+.|++++|.+++++ .+..+++|++|++++|.+.+
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence 7777766642 22 222 6677777777766532 34666677777777777766664 45666777777777776665
Q ss_pred CCCccccccccccEEEccCCeeee
Q 038106 296 PLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 296 ~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
. ..+..+++|+.|++++|.+..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h--HHhccCCCCCEEeCCCCcccC
Confidence 3 445666677777777776654
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.1e-16 Score=146.59 Aligned_cols=195 Identities=21% Similarity=0.263 Sum_probs=156.3
Q ss_pred ceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCccccc
Q 038106 85 LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSL 164 (349)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 164 (349)
+..+.+..+.+... ..+..+++|+.|++++|.+...+ .+..+++|+.|++++|.+....+ +..+ ++|
T Consensus 23 l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~Ls~N~l~~~~~---l~~l-~~L 89 (605)
T 1m9s_A 23 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTDIKP---LTNL-KNL 89 (605)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCCCCT-------TGGGCTTCCEEECTTSCCCCCGG---GGGC-TTC
T ss_pred HHHHhccCCCcccc--cchhcCCCCCEEECcCCCCCCCh-------HHccCCCCCEEEeeCCCCCCChh---hccC-CCC
Confidence 33444555554432 22456789999999999887654 37788999999999999876544 3333 489
Q ss_pred CeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCC
Q 038106 165 EDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGN 244 (349)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 244 (349)
+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|
T Consensus 90 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 90 GWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred CEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 9999999998853 3588999999999999998853 4578899999999999999864 67889999999999999
Q ss_pred ccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccc
Q 038106 245 KLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEI 301 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 301 (349)
.+....+ +..+++|+.|++++|.+..++ .+..+++|+.|++++|.+.......+
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCccccc
Confidence 9876544 889999999999999999985 57889999999999999887544333
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=3.4e-17 Score=141.57 Aligned_cols=178 Identities=21% Similarity=0.202 Sum_probs=143.6
Q ss_pred CCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCcccc-CcccccCeeeecCcccccCcchhccCCCC
Q 038106 109 LQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIG-NLSHSLEDFKMHNCNVSGGIPEEISNLTN 187 (349)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~l~~~~~ 187 (349)
-+.++++++.+..++.. + .+.++.|++++|.+....+. .+. .+ .+|+.|++++|.+....+..+..+++
T Consensus 20 ~~~l~c~~~~l~~iP~~------~--~~~l~~L~Ls~N~l~~l~~~-~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS------L--PSYTALLDLSHNNLSRLRAE-WTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp TTEEECCSSCCSSCCSS------C--CTTCSEEECCSSCCCEECTT-SSSSCC-TTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCEEEeCCCCcCccCcc------C--CCCCCEEECCCCCCCccChh-hhhhcc-cccCEEECCCCcCCccChhhccCCCC
Confidence 36888888888877643 2 24689999999998765443 333 33 48999999999998777778899999
Q ss_pred CCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhh---hCCCCCceEe
Q 038106 188 LTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACF---SNLASLRILS 264 (349)
Q Consensus 188 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~ 264 (349)
|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+ ..+++|+.|+
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 9999999999986666678899999999999999987778889999999999999999886555555 5689999999
Q ss_pred cCCccCCcCCc-ccccCCC--ccEEEecCCcCCCC
Q 038106 265 LGSNELTSIPL-TFWNLNN--ILYLNFSSNFFTAP 296 (349)
Q Consensus 265 l~~~~~~~~~~-~~~~~~~--L~~L~l~~~~~~~~ 296 (349)
+++|.+..++. .+..++. ++.|++++|++..+
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 99999998764 4566665 48899999988763
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=7.6e-17 Score=146.07 Aligned_cols=188 Identities=22% Similarity=0.314 Sum_probs=151.0
Q ss_pred CCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCccc
Q 038106 83 SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSH 162 (349)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 162 (349)
.+|+.|+++++.+.+ ++..+ +++|++|++++|.+..++ ..+++|++|++++|.+.. .+. + +.
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---------~~l~~L~~L~Ls~N~l~~-ip~--l---~~ 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---------ELPASLEYLDACDNRLST-LPE--L---PA 120 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSC-CCC--C---CT
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---------cccCCCCEEEccCCCCCC-cch--h---hc
Confidence 389999999999886 55544 388999999999988655 235899999999999876 333 2 23
Q ss_pred ccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcC
Q 038106 163 SLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELG 242 (349)
Q Consensus 163 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 242 (349)
+++.|++++|.+.+ +|. .+++|+.|++++|.+.+ ++. .+++|+.|++++|.+++ .|. +. ++|+.|+++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 89999999999986 444 67899999999999885 443 56899999999999986 555 54 899999999
Q ss_pred CCccCCCChhhhhCCCCC-------ceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCcccccc
Q 038106 243 GNKLFGSIPACFSNLASL-------RILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNL 304 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 304 (349)
+|.+. .++. +.. +| +.|++++|.++.+|..+..+++|+.|++++|++.+..+..+..+
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 99987 4444 443 67 99999999999999988889999999999999988666666554
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=8.2e-18 Score=143.60 Aligned_cols=126 Identities=13% Similarity=0.025 Sum_probs=93.5
Q ss_pred cCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcC-CcccccCCCcc-EE
Q 038106 209 LQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNIL-YL 286 (349)
Q Consensus 209 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~-~L 286 (349)
..++..+.+.+.-...........+++|+.+++.+|.+......+|..|.+|+.+++.++ ++.+ ..+|..|++|+ .+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 345566666554211111111124788899999988877777778888899999999887 6665 44678889998 99
Q ss_pred EecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEec
Q 038106 287 NFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFL 336 (349)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l 336 (349)
.+.+ .+......+|..|++|+.++++++.+....+.+|..|++|+.|+.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9988 666666678889999999999999888777788999999998874
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.2e-17 Score=142.52 Aligned_cols=289 Identities=16% Similarity=0.101 Sum_probs=176.1
Q ss_pred cccccEEecCCccccCccchhhcc-ccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhcc------
Q 038106 9 LRNLERLGLGLNKLIGTVPAAIFN-VSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN------ 81 (349)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------ 81 (349)
+.+++.|.+++. +...-...+.. +++|++|+|++|.+...... ...++.++.+....+.+ ....|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCc--ccccccccccccccccc---CHHHhcccccccc
Confidence 567888888764 22111223333 67888999988887511111 01233344444444432 2345666
Q ss_pred --CCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccc---cccCCcc
Q 038106 82 --ASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLD---CILPKTS 156 (349)
Q Consensus 82 --~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~ 156 (349)
+++|+++.+.+ .+..+...+|.+|++|+.+.+..+.+..++.. ++..+.++..+.......- ..+....
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~-----aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPE-----ALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTT-----SSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchh-----hhcCCCceEEecCcchhhhhccccccccc
Confidence 88999999988 77766677888899999999988877665544 4666666766666552210 0011111
Q ss_pred ccCcccccC-eeeecCcccc-cCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCC
Q 038106 157 IGNLSHSLE-DFKMHNCNVS-GGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLT 234 (349)
Q Consensus 157 ~~~~~~~l~-~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 234 (349)
+..+. .++ .+.+...... ......-....++..+.+.+.-...........+++|+.+++.+|.++.....+|.+++
T Consensus 172 f~~~~-~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 172 FIEGE-PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp EEESC-CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred ccccc-ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 21111 232 2333221110 00000011234556666655422211111122467888888888877766667788888
Q ss_pred cccEEEcCCCccCCCChhhhhCCCCCc-eEecCCccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccccccEEEc
Q 038106 235 ELYELELGGNKLFGSIPACFSNLASLR-ILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDF 312 (349)
Q Consensus 235 ~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 312 (349)
+|+.+++.++ +......+|..+++|+ .+++.+ .++.+ +.+|..|++|+.+++.++.+......+|..+++|+.++.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8888888887 5556677788888898 888887 66665 457888899999999888888877778888888888764
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=1.2e-16 Score=128.09 Aligned_cols=152 Identities=26% Similarity=0.316 Sum_probs=127.5
Q ss_pred cEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecC
Q 038106 139 THIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFE 218 (349)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 218 (349)
+.++.+++.+... |. .++.+++.|+++++.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|+++
T Consensus 14 ~~v~c~~~~l~~i-P~----~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PT----NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSC-CS----SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcC-CC----ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 6778888777643 22 234689999999999887767678889999999999999987777888899999999999
Q ss_pred CCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEecCCcCCC
Q 038106 219 DNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 219 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 295 (349)
+|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..++. .+..+++|++|++++|++..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999986666677889999999999999887778888899999999999999998654 57788999999999998865
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=2.4e-16 Score=126.35 Aligned_cols=154 Identities=23% Similarity=0.293 Sum_probs=131.0
Q ss_pred CcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcc-hhccCCCCCCEEEcCCccCCCccchhccccCCCCeee
Q 038106 138 LTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIP-EEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLR 216 (349)
Q Consensus 138 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 216 (349)
.+.++++++.+... |. .++..++.|+++++.+....+ ..+..+++|++|++++|.+.+..+..|..+++|+.|+
T Consensus 13 ~~~l~~s~n~l~~i-P~----~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKLNKI-PE----HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCCSSC-CS----CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEeEeCCCCcccC-cc----CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 46889998887653 32 234578899999999886644 4578899999999999999876666888999999999
Q ss_pred cCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEecCCcCCC
Q 038106 217 FEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 217 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~ 295 (349)
+++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.++.+ +..+..+++|++|++++|++..
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 999999987777899999999999999999877788888999999999999999986 6788889999999999999876
Q ss_pred C
Q 038106 296 P 296 (349)
Q Consensus 296 ~ 296 (349)
+
T Consensus 168 ~ 168 (220)
T 2v70_A 168 N 168 (220)
T ss_dssp S
T ss_pred C
Confidence 4
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=6.9e-17 Score=123.96 Aligned_cols=135 Identities=21% Similarity=0.214 Sum_probs=82.9
Q ss_pred CCCCeeecCCCcCC-CCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCc-CCcccccCCCccEEE
Q 038106 210 QKLQGLRFEDNKLE-GSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTS-IPLTFWNLNNILYLN 287 (349)
Q Consensus 210 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~ 287 (349)
++++.|++++|.+. +..+..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.. ++..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555544 33444455556666666666665433 445566666677777666666 555555567777777
Q ss_pred ecCCcCCCCCC-ccccccccccEEEccCCeeeeccC---cccccCCCCceEecCCccccCCCCC
Q 038106 288 FSSNFFTAPLP-LEIGNLKVLVGMDFSMNNFSGVIP---TEIGGLKNLEYLFLGYNRLQGSIPD 347 (349)
Q Consensus 288 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~l~l~~~~~~~~~p~ 347 (349)
+++|.+.+... ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|++. ++|+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 77776665322 456667777777777777764333 25677777777777777775 3444
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=4.6e-16 Score=128.16 Aligned_cols=170 Identities=21% Similarity=0.291 Sum_probs=135.6
Q ss_pred CCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCC
Q 038106 106 LRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNL 185 (349)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~ 185 (349)
+.++..++++++.+.... .+..+++|+.|++++|.+.... .+..+ ++++.|++++|.+.+..+ +..+
T Consensus 18 l~~l~~l~l~~~~i~~~~-------~~~~l~~L~~L~l~~n~i~~l~---~l~~l-~~L~~L~L~~N~i~~~~~--l~~l 84 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-------SQKELSGVQNFNGDNSNIQSLA---GMQFF-TNLKELHLSHNQISDLSP--LKDL 84 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-------CHHHHTTCSEEECTTSCCCCCT---TGGGC-TTCCEEECCSSCCCCCGG--GTTC
T ss_pred HHHHHHHHhcCCCccccc-------chhhcCcCcEEECcCCCcccch---HHhhC-CCCCEEECCCCccCCChh--hccC
Confidence 455666777777665543 3567789999999999887542 23333 489999999999886544 8899
Q ss_pred CCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEec
Q 038106 186 TNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSL 265 (349)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 265 (349)
++|++|++++|.+.+. +. +.. ++|+.|++++|.+++. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++
T Consensus 85 ~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L 157 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEEC
Confidence 9999999999998853 22 333 8999999999998853 3588999999999999998754 36888999999999
Q ss_pred CCccCCcCCcccccCCCccEEEecCCcCCCC
Q 038106 266 GSNELTSIPLTFWNLNNILYLNFSSNFFTAP 296 (349)
Q Consensus 266 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 296 (349)
++|.+.++ ..+..+++|+.|++++|.+...
T Consensus 158 ~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 158 HGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 99999988 5678899999999999998875
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=6.3e-16 Score=118.58 Aligned_cols=132 Identities=21% Similarity=0.185 Sum_probs=98.0
Q ss_pred CCCCCEEEcCCccCC-CccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceE
Q 038106 185 LTNLTTIDLGGNMLN-GSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRIL 263 (349)
Q Consensus 185 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 263 (349)
.+++++|++++|.+. +..+..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+....+..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 466777777777776 44555566777788888887777644 566777888888888887775566666668888888
Q ss_pred ecCCccCCcCC--cccccCCCccEEEecCCcCCCCCC---ccccccccccEEEccCCeee
Q 038106 264 SLGSNELTSIP--LTFWNLNNILYLNFSSNFFTAPLP---LEIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 264 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 318 (349)
++++|.+..++ ..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888887765 567778888888888888877444 36777888888888888765
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=2.2e-15 Score=117.99 Aligned_cols=128 Identities=30% Similarity=0.443 Sum_probs=97.8
Q ss_pred CEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCch-hhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCC
Q 038106 189 TTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPD-SICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGS 267 (349)
Q Consensus 189 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (349)
+.++++++.+. .++..+. .+++.|++++|.+.+..+. .+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888876 4444333 3788888888888755543 477888888888888888777677788888888888888
Q ss_pred ccCCcCC-cccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee
Q 038106 268 NELTSIP-LTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 268 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
|.+..++ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 8888754 346778888888888888887667777778888888888887764
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2.4e-18 Score=156.59 Aligned_cols=121 Identities=20% Similarity=0.223 Sum_probs=98.3
Q ss_pred CCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecC
Q 038106 187 NLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLG 266 (349)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 266 (349)
.|+.|++++|.+.+ .+. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.. ++ .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47889999888874 444 788889999999999888 677888899999999999998875 44 78889999999999
Q ss_pred CccCCcC--CcccccCCCccEEEecCCcCCCCCCc---cccccccccEEEc
Q 038106 267 SNELTSI--PLTFWNLNNILYLNFSSNFFTAPLPL---EIGNLKVLVGMDF 312 (349)
Q Consensus 267 ~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l 312 (349)
+|.++.+ |..+..+++|+.|++++|++.+..+. .+..+|+|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999887 78888899999999999988874332 2334788888864
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=2.8e-14 Score=124.32 Aligned_cols=266 Identities=11% Similarity=0.108 Sum_probs=193.5
Q ss_pred ccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCC
Q 038106 56 VRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNC 135 (349)
Q Consensus 56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 135 (349)
..+..++.+.+... ++.....+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+..+... ++..+
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~-----aF~~c 179 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKED-----IFYYC 179 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSS-----TTTTC
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHH-----HhhCc
Confidence 35677888888654 443445566664 7999998765 555556677774 699998875 34444433 57889
Q ss_pred CCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCee
Q 038106 136 KSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGL 215 (349)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 215 (349)
++|+.+++..+.+...... .+. ..+++.+.+..+ +......++..+++|+.+++..+ +......+|.. .+|+.+
T Consensus 180 ~~L~~l~l~~n~l~~I~~~-aF~--~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPAS-TFV--YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp TTCCEEECTTSCCSEECTT-TTT--TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred ccCCeeecCCCcceEechh-hEe--ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 9999999988877655444 333 258888888744 55555667889999999999764 44445556666 789999
Q ss_pred ecCCCcCCCCCchhhccCCcccEEEcCCCccC-----CCChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEec
Q 038106 216 RFEDNKLEGSIPDSICRLTELYELELGGNKLF-----GSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFS 289 (349)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~ 289 (349)
.+.+ .+......+|.++++|+.+++.++... .....+|..|++|+.+.+.+ .++.+ ..+|..|++|+.+.+.
T Consensus 254 ~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 254 KLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred EeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 9954 455456678899999999999887553 35567788999999999984 46665 4468889999999996
Q ss_pred CCcCCCCCCccccccccccEEEccCCeeeeccCcccccCC-CCceEecCCccc
Q 038106 290 SNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLK-NLEYLFLGYNRL 341 (349)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~l~l~~~~~ 341 (349)
.+ +......+|..+ +|+.+++.+|........++..++ .++.|++..+.+
T Consensus 332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 55 555566778888 999999999987766667777775 688888877653
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.3e-15 Score=114.30 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=40.5
Q ss_pred CCCEEEcCCccCC-CccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEec
Q 038106 187 NLTTIDLGGNMLN-GSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSL 265 (349)
Q Consensus 187 ~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 265 (349)
++++|++++|.+. +..+..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444433 22232333334444444444433322 23333344444444444433323333333444444444
Q ss_pred CCccCCcCC--cccccCCCccEEEecCCcCC
Q 038106 266 GSNELTSIP--LTFWNLNNILYLNFSSNFFT 294 (349)
Q Consensus 266 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 294 (349)
++|.++.++ ..+..+++|++|++++|.+.
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 444443322 23333344444444444333
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=6.4e-16 Score=116.02 Aligned_cols=129 Identities=19% Similarity=0.147 Sum_probs=110.9
Q ss_pred ccCCCCeeecCCCcCC-CCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCc-CCcccccCCCccE
Q 038106 208 KLQKLQGLRFEDNKLE-GSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTS-IPLTFWNLNNILY 285 (349)
Q Consensus 208 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~ 285 (349)
..++++.|++++|.++ +..+..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.. ++..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999988 67777888999999999999988755 678889999999999999998 7777777999999
Q ss_pred EEecCCcCCCC-CCccccccccccEEEccCCeeeeccC---cccccCCCCceEecCC
Q 038106 286 LNFSSNFFTAP-LPLEIGNLKVLVGMDFSMNNFSGVIP---TEIGGLKNLEYLFLGY 338 (349)
Q Consensus 286 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~l~l~~ 338 (349)
|++++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999873 23678889999999999999986544 4688899999999864
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=1.4e-17 Score=151.58 Aligned_cols=104 Identities=21% Similarity=0.180 Sum_probs=49.5
Q ss_pred ccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCC
Q 038106 236 LYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMN 315 (349)
Q Consensus 236 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 315 (349)
|+.|++++|.+.. .+. +..+++|+.|++++|.++.+|..+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 4445555544432 222 444445555555555544444444445555555555554444 22 4444455555555555
Q ss_pred eeeecc-CcccccCCCCceEecCCccccC
Q 038106 316 NFSGVI-PTEIGGLKNLEYLFLGYNRLQG 343 (349)
Q Consensus 316 ~~~~~~-~~~l~~~~~L~~l~l~~~~~~~ 343 (349)
.+.+.. |..+..+++|+.|++++|++++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 544333 4444445555555555555443
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=1.2e-13 Score=120.48 Aligned_cols=264 Identities=13% Similarity=0.098 Sum_probs=148.8
Q ss_pred ccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEE
Q 038106 33 VSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKL 112 (349)
Q Consensus 33 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 112 (349)
+..++.+.+.+. + ..+....+..+ +|+.+.+..+ +......+|.+ .+|+.+.+.. .+......+|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~~-i-~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-V-KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-C-CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-c-CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 345555555443 2 22222222233 5666666544 33333344444 2466666654 3443444556666666666
Q ss_pred EccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEE
Q 038106 113 RLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTID 192 (349)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 192 (349)
.+..+.+..++.. .+. +.+|+.+.+..+ +... +...+..+ .+|+.+.+..+ +......++.. .+|+.+.
T Consensus 186 ~l~~n~l~~I~~~-----aF~-~~~L~~l~lp~~-l~~I-~~~aF~~~-~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 186 DLSKTKITKLPAS-----TFV-YAGIEEVLLPVT-LKEI-GSQAFLKT-SQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp ECTTSCCSEECTT-----TTT-TCCCSEEECCTT-CCEE-CTTTTTTC-TTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred ecCCCcceEechh-----hEe-ecccCEEEeCCc-hhee-hhhHhhCC-CCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 6666555544433 122 356666666532 2222 22223222 25666666542 23233334444 5677777
Q ss_pred cCCccCCCccchhccccCCCCeeecCCCcCC-----CCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCC
Q 038106 193 LGGNMLNGSIPITLSKLQKLQGLRFEDNKLE-----GSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGS 267 (349)
Q Consensus 193 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (349)
+.. .+......+|.++++|+.+.+.++... .....+|.++++|+.+++..+ +......+|..|.+|+.+.+..
T Consensus 255 lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECT
T ss_pred eCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECc
Confidence 743 344445566777777777777665443 234456778888888888743 5555666778888888888865
Q ss_pred ccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccc-cccEEEccCCee
Q 038106 268 NELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLK-VLVGMDFSMNNF 317 (349)
Q Consensus 268 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 317 (349)
+ ++.+ ..+|..| +|+.+.+.++.........+..++ +++.+.+..+.+
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4 5554 4467777 888888888877665555666663 677777776654
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=2.6e-13 Score=118.69 Aligned_cols=308 Identities=15% Similarity=0.109 Sum_probs=137.1
Q ss_pred hhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCC
Q 038106 5 EIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASK 84 (349)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (349)
+|.+|.+|+.+.+..+ ++..-..+|.+|.+|+.+++..+ + ..+....+..+++|+.+.+..+ +......+|..+..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-V-KMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-c-eEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 5777788888887643 44334456777888888887654 2 3333444446777776665433 22122233433332
Q ss_pred ceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCccccc
Q 038106 85 LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSL 164 (349)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 164 (349)
++....... ......+|.++.+|+.+.+..+. ...... .+..+++|+.+.+..+ +... ....+... ..+
T Consensus 142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~-----~F~~c~~L~~i~l~~~-~~~I-~~~~F~~~-~~L 210 (394)
T 4fs7_A 142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNG-----LFSGCGKLKSIKLPRN-LKII-RDYCFAEC-ILL 210 (394)
T ss_dssp SEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTT-----TTTTCTTCCBCCCCTT-CCEE-CTTTTTTC-TTC
T ss_pred cccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccc-----cccCCCCceEEEcCCC-ceEe-Cchhhccc-ccc
Confidence 222221111 11223456666677777665432 222211 3555666666666443 1111 11122211 234
Q ss_pred CeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCC
Q 038106 165 EDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGN 244 (349)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 244 (349)
+.+.+...... .........+|+.+.+... ........+..+..++.+.+..+... .....+..+..++.+.....
T Consensus 211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred ceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 44433332211 1111223344555555332 11122334445555555555443221 22233444444444444433
Q ss_pred ccCCCChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCc
Q 038106 245 KLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPT 323 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 323 (349)
.+. ...+..+.+|+.+.+..+ ++.+ ..+|..|.+|+.+.+..+ +......+|.+|.+|+.+++..+ +......
T Consensus 287 ~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 287 IVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp EEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred eec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 221 123344455555555432 2222 223444555555555322 33323334445555555555444 3333344
Q ss_pred ccccCCCCceEecC
Q 038106 324 EIGGLKNLEYLFLG 337 (349)
Q Consensus 324 ~l~~~~~L~~l~l~ 337 (349)
+|.+|++|+.+++.
T Consensus 361 aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 361 AFQGCINLKKVELP 374 (394)
T ss_dssp TBTTCTTCCEEEEE
T ss_pred HhhCCCCCCEEEEC
Confidence 55555555555543
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=8.6e-15 Score=114.65 Aligned_cols=131 Identities=27% Similarity=0.367 Sum_probs=112.1
Q ss_pred ccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccch-hccccCCCCeeecCCCcCCCCCchhhccCCcccEEEc
Q 038106 163 SLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPI-TLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELEL 241 (349)
Q Consensus 163 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 241 (349)
..++++++++.+. .+|..+. +++++|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus 9 ~~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 4478899998886 4444333 3899999999999865543 4888999999999999999888889999999999999
Q ss_pred CCCccCCCChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEecCCcCCCC
Q 038106 242 GGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAP 296 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 296 (349)
++|.+....+..+..+++|++|++++|.+..+ +..+..+++|++|++++|++...
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99999877777788999999999999999984 77788899999999999998874
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2.6e-14 Score=110.52 Aligned_cols=129 Identities=25% Similarity=0.281 Sum_probs=90.0
Q ss_pred CCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCC
Q 038106 188 LTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGS 267 (349)
Q Consensus 188 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (349)
.+.++++++++.. .+..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4677777777663 33222 36788888888877765555667778888888888877655555567777788888888
Q ss_pred ccCCcCCc-ccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee
Q 038106 268 NELTSIPL-TFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 268 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
|.++.++. .+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 77777554 35667777788887777776444445667777777777777664
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=8.6e-16 Score=144.08 Aligned_cols=188 Identities=20% Similarity=0.214 Sum_probs=106.5
Q ss_pred CCCCcEEeCCCCccccccCCccccCcccccCeeeecCccccc---------CcchhccCCCCCCEEEcCCccCCCccchh
Q 038106 135 CKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSG---------GIPEEISNLTNLTTIDLGGNMLNGSIPIT 205 (349)
Q Consensus 135 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 205 (349)
.+.++.|++.++.+... +. ..++.++++.+.+.. ..+..+..+++|+.|++++|.+. .++..
T Consensus 172 ~~~~~~l~L~~n~~~~~-~~-------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~ 242 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA-NQ-------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISAN 242 (727)
T ss_dssp ----------------------------------------------------------CCCCCCEEECTTSCCS-CCCGG
T ss_pred CCccceEEeeCCCCCcc-hh-------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChh
Confidence 35677888877766542 11 123333444333321 33556777888888999888887 44445
Q ss_pred ccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccE
Q 038106 206 LSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILY 285 (349)
Q Consensus 206 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 285 (349)
+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+. .++..+..+++|++|++++|.++.+|..+..+++|++
T Consensus 243 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQF 320 (727)
T ss_dssp GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCC
T ss_pred hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccE
Confidence 557888888899888888 67777888888888888888887 5577788888888888888888888888888888888
Q ss_pred EEecCCcCCCCCCccccccc-cccEEEccCCeeeeccCcccccCCCCceEecCCc
Q 038106 286 LNFSSNFFTAPLPLEIGNLK-VLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYN 339 (349)
Q Consensus 286 L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 339 (349)
|+|++|.+.+..+..+..+. ....+++++|.+.+.+|. .|+.|++++|
T Consensus 321 L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 321 LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp EECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred EeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 88888888875555554321 223467788887765554 3455566665
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=1.2e-15 Score=142.99 Aligned_cols=217 Identities=22% Similarity=0.283 Sum_probs=109.3
Q ss_pred CCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCC-----CCccccccCCccccCcccccCeeeecCcccccCcchh
Q 038106 107 RNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLS-----NNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEE 181 (349)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~-----~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 181 (349)
++++.|.+.++.+...+.. +.....|+.+.+. .+.+. .+...+..+ ..++.|++++|.+. .++..
T Consensus 173 ~~~~~l~L~~n~~~~~~~~------~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l-~~L~~L~Ls~n~l~-~l~~~ 242 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA------LLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDD-QLWHALDLSNLQIF-NISAN 242 (727)
T ss_dssp ---------------------------------------------------------CC-CCCCEEECTTSCCS-CCCGG
T ss_pred CccceEEeeCCCCCcchhh------HhhcCccCcccccCcccccccee--cChhhhccC-CCCcEEECCCCCCC-CCChh
Confidence 5677788877766554322 2122223333322 22221 112223333 47899999999987 55556
Q ss_pred ccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCc
Q 038106 182 ISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLR 261 (349)
Q Consensus 182 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 261 (349)
+..+++|++|++++|.+. .++..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.+. .++..+..+++|+
T Consensus 243 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319 (727)
T ss_dssp GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCC
T ss_pred hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCcc
Confidence 678899999999999988 67777888999999999999988 67888899999999999999886 5566788899999
Q ss_pred eEecCCccCCc-CCcccccCC-CccEEEecCCcCCCCCCccccccccccEEEccCC--------eeeeccCcccccCCCC
Q 038106 262 ILSLGSNELTS-IPLTFWNLN-NILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMN--------NFSGVIPTEIGGLKNL 331 (349)
Q Consensus 262 ~L~l~~~~~~~-~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~~~~~~~~l~~~~~L 331 (349)
.|++++|.+.. .+..+.... ....+++.+|.+....+. .|..|+++.| .+....+..+..++.+
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~ 393 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKR 393 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------------------
T ss_pred EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhccccc
Confidence 99999999886 444443322 223467888888775553 4556666666 2222333334455555
Q ss_pred ceEecCCcccc
Q 038106 332 EYLFLGYNRLQ 342 (349)
Q Consensus 332 ~~l~l~~~~~~ 342 (349)
....+.+|-+.
T Consensus 394 ~~~~ls~Nil~ 404 (727)
T 4b8c_D 394 TFTVLSYNTLC 404 (727)
T ss_dssp --------CCC
T ss_pred ceeeeeccccc
Confidence 66666666653
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=4.8e-14 Score=110.38 Aligned_cols=127 Identities=21% Similarity=0.312 Sum_probs=103.1
Q ss_pred CEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCc
Q 038106 189 TTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSN 268 (349)
Q Consensus 189 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 268 (349)
+.++++++.+. ..+..+ .++++.|++++|.++ ..+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888877 444333 368899999999887 56678888999999999999888777777888899999999999
Q ss_pred cCCcCCc-ccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeee
Q 038106 269 ELTSIPL-TFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 269 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
.++.++. .+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9888654 67888899999999998887555667788899999999887753
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.3e-14 Score=112.09 Aligned_cols=132 Identities=21% Similarity=0.219 Sum_probs=85.0
Q ss_pred ccCCCCCCEEEcCCccCCCccchhcccc-CCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCC
Q 038106 182 ISNLTNLTTIDLGGNMLNGSIPITLSKL-QKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASL 260 (349)
Q Consensus 182 l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 260 (349)
+..+++|++|++++|.+.+ .+. +... ++|+.|++++|.+++. ..+..+++|+.|++++|.+....+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4556777888888777763 232 3333 3777777777776643 456667777777777777664433444667777
Q ss_pred ceEecCCccCCcCCc--ccccCCCccEEEecCCcCCCCCCc----cccccccccEEEccCCeee
Q 038106 261 RILSLGSNELTSIPL--TFWNLNNILYLNFSSNFFTAPLPL----EIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 261 ~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~ 318 (349)
++|++++|.+..++. .+..+++|++|++++|++.. .+. .+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777777766655 56666777777777777665 333 2556677777777666543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.9e-14 Score=111.16 Aligned_cols=131 Identities=17% Similarity=0.138 Sum_probs=88.5
Q ss_pred ccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcc-cccCCCcc
Q 038106 206 LSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLT-FWNLNNIL 284 (349)
Q Consensus 206 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~ 284 (349)
+..+.+++.|++++|.++. .+......++|+.|++++|.+... ..+..+++|++|++++|.+..++.. +..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4456677777777777763 343323334777888877776543 4566777777888887777776543 36777788
Q ss_pred EEEecCCcCCCCCCc--cccccccccEEEccCCeeeeccCc----ccccCCCCceEecCCccc
Q 038106 285 YLNFSSNFFTAPLPL--EIGNLKVLVGMDFSMNNFSGVIPT----EIGGLKNLEYLFLGYNRL 341 (349)
Q Consensus 285 ~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~l~l~~~~~ 341 (349)
+|++++|.+.. .+. .+..+++|+.|++++|.+. ..+. .+..+++|+.|++++|+.
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888777765 333 5667777778888877776 3444 367777777777777764
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=2.2e-13 Score=106.55 Aligned_cols=128 Identities=27% Similarity=0.386 Sum_probs=109.6
Q ss_pred cCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCC
Q 038106 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGG 243 (349)
Q Consensus 164 l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 243 (349)
-+.++++++.+.. +|..+ .+++++|++++|.+. ..+..+..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 12 ~~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 4578888888774 44333 368999999999998 5557888999999999999999987778899999999999999
Q ss_pred CccCCCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEecCCcCCC
Q 038106 244 NKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 295 (349)
|.+....+..+..+++|++|++++|.+..++. .+..+++|+.|++++|++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99987777789999999999999999999766 57789999999999998865
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=1e-12 Score=114.94 Aligned_cols=305 Identities=13% Similarity=0.078 Sum_probs=206.1
Q ss_pred hhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCC
Q 038106 4 PEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNAS 83 (349)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 83 (349)
.+|.+|++|+.+++..+ ++..-..+|..|..|+.+.+..+ + .......+..+..++....... ......+|.++.
T Consensus 88 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l-~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~ 162 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-L-KSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCE 162 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-C-CEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCT
T ss_pred hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-e-eeecceeeecccccccccCccc--cccchhhhcccC
Confidence 46899999999999754 44344567889999999888754 2 2222223334443333322222 223345688899
Q ss_pred CceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccc
Q 038106 84 KLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHS 163 (349)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 163 (349)
+|+.+.+..+. .......|.++.+|+.+.+..+ +...... .+..+..|+.+.+..+.... ....+. ...
T Consensus 163 ~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~-----~F~~~~~L~~i~~~~~~~~i--~~~~~~--~~~ 231 (394)
T 4fs7_A 163 SLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDY-----CFAECILLENMEFPNSLYYL--GDFALS--KTG 231 (394)
T ss_dssp TCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTT-----TTTTCTTCCBCCCCTTCCEE--CTTTTT--TCC
T ss_pred CCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCch-----hhccccccceeecCCCceEe--ehhhcc--cCC
Confidence 99999997654 3345567888999999988765 3333322 46778888888776543321 111111 246
Q ss_pred cCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCC
Q 038106 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGG 243 (349)
Q Consensus 164 l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 243 (349)
++.+.+.... .......+..+..++.+.+..+... .....+..+..++.+......+. ...+..+.+|+.+.+..
T Consensus 232 l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 232 VKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT
T ss_pred CceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc
Confidence 7777775432 2233445778889999998765432 44556778888888888765443 24677889999999977
Q ss_pred CccCCCChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccC
Q 038106 244 NKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIP 322 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 322 (349)
+ +......+|..|.+|+.+++..+ ++.+ ..+|..|.+|+.+.+..+ +......+|..|++|+.+++..+ +. .+.
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~ 381 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYR 381 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGG
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehh
Confidence 5 44456678889999999999754 5554 457889999999999766 65556678899999999999765 22 334
Q ss_pred cccccCCCCceE
Q 038106 323 TEIGGLKNLEYL 334 (349)
Q Consensus 323 ~~l~~~~~L~~l 334 (349)
.++.+|++|+.+
T Consensus 382 ~~F~~c~~L~~I 393 (394)
T 4fs7_A 382 YDFEDTTKFKWI 393 (394)
T ss_dssp GGBCTTCEEEEE
T ss_pred heecCCCCCcEE
Confidence 678888888875
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.7e-16 Score=125.13 Aligned_cols=133 Identities=24% Similarity=0.191 Sum_probs=89.2
Q ss_pred hccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCcc
Q 038106 205 TLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNIL 284 (349)
Q Consensus 205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 284 (349)
.+..+++|+.|++++|.+.+ .+ .+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+..++ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 56666677777777776664 34 5666677777777777665 33445555677777777777777765 466677777
Q ss_pred EEEecCCcCCCCCC-ccccccccccEEEccCCeeeeccCc----------ccccCCCCceEecCCccccC
Q 038106 285 YLNFSSNFFTAPLP-LEIGNLKVLVGMDFSMNNFSGVIPT----------EIGGLKNLEYLFLGYNRLQG 343 (349)
Q Consensus 285 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~l~l~~~~~~~ 343 (349)
+|++++|.+..... ..+..+++|+.|++++|.+.+..|. .+..+++|+.|+ +++++.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88887777765222 3566777888888888877654433 267788888776 777653
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=4.5e-13 Score=103.47 Aligned_cols=131 Identities=24% Similarity=0.289 Sum_probs=99.9
Q ss_pred ccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcC
Q 038106 163 SLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELG 242 (349)
Q Consensus 163 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 242 (349)
..+.++++++.+... |.. ..+++++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus 8 ~~~~l~~~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSV-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSSC-CTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCccC-CCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 456777777776643 322 23678888888888876666667788888888888888886666667888888888888
Q ss_pred CCccCCCChhhhhCCCCCceEecCCccCCcCCcc-cccCCCccEEEecCCcCCCC
Q 038106 243 GNKLFGSIPACFSNLASLRILSLGSNELTSIPLT-FWNLNNILYLNFSSNFFTAP 296 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 296 (349)
+|.+....+..+..+++|++|++++|.++.++.. +..+++|++|++++|++...
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 8888766666677888888888888888887654 46788888888888888763
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=1.6e-11 Score=107.24 Aligned_cols=316 Identities=13% Similarity=0.139 Sum_probs=192.8
Q ss_pred hhhhccc-cccEEecCCccccCccchhhccccccceeeccCce---eccccCccccccCCcccEEeccCCcCCCccchhh
Q 038106 4 PEIGNLR-NLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNS---LFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFI 79 (349)
Q Consensus 4 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 79 (349)
.+|.++. .|+.+.+... ++..-..+|.+|.+|+.+.+..+. + ..+....+..+.+|+.+.+..+ ++......|
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l-~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCV-KKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCC-CEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCee-eEechhhchhcccceeeccCCc-cceehhhhh
Confidence 3577775 5999999754 444556789999999999997653 3 3344444557888988887654 333445667
Q ss_pred ccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccC
Q 038106 80 FNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGN 159 (349)
Q Consensus 80 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 159 (349)
..+.+|+.+.+.... .......+..+..|+.+.+..+ +...... ++. ...|+.+.+...-.. .. ...+..
T Consensus 134 ~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~-----aF~-~~~l~~i~ip~~~~~-i~-~~af~~ 203 (394)
T 4gt6_A 134 HHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEER-----AFT-GTALTQIHIPAKVTR-IG-TNAFSE 203 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTT-----TTT-TCCCSEEEECTTCCE-EC-TTTTTT
T ss_pred hhhccccccccccee-eeecccceecccccccccccce-eeEeccc-----ccc-ccceeEEEECCcccc-cc-cchhhh
Confidence 888999999987543 3345567788889999988754 2322222 232 346777776443211 11 111111
Q ss_pred cccccCeeeecCcccccCcc-------------hhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCC
Q 038106 160 LSHSLEDFKMHNCNVSGGIP-------------EEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSI 226 (349)
Q Consensus 160 ~~~~l~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 226 (349)
. ..+............... ........+..+.+.. .+......+|..+..|+.+.+...... ..
T Consensus 204 c-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~ 280 (394)
T 4gt6_A 204 C-FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IG 280 (394)
T ss_dssp C-TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-EC
T ss_pred c-cccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ec
Confidence 1 233333332221110000 0011223344444432 222234456778889999998765332 45
Q ss_pred chhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccc
Q 038106 227 PDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLK 305 (349)
Q Consensus 227 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 305 (349)
..++.+++.|+.+.+... +......+|..|.+|+.+.+..+ ++.+ ..+|..|.+|+.+.+..+ +......+|.+|.
T Consensus 281 ~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred CcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 567888899999998753 44455677888999999999754 5554 447888999999999654 6665667889999
Q ss_pred cccEEEccCCeeeeccCcccccCCCCceEecCCccc
Q 038106 306 VLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 341 (349)
Q Consensus 306 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 341 (349)
+|+.+++.++.... .++..+.+|+.+.+..+.+
T Consensus 358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 99999999875431 4567788899988877654
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=1.8e-15 Score=119.26 Aligned_cols=137 Identities=26% Similarity=0.275 Sum_probs=111.3
Q ss_pred ccccCCCCeeecCCCcCCCCCch------hhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCccccc
Q 038106 206 LSKLQKLQGLRFEDNKLEGSIPD------SICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWN 279 (349)
Q Consensus 206 l~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 279 (349)
+.....++.+++.++.+.+..+. .+..+++|++|++++|.+.. .+ .+..+++|++|++++|.+..++..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 33445555555555555544443 88899999999999999875 44 788899999999999999999888888
Q ss_pred CCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccC-cccccCCCCceEecCCccccCCCC
Q 038106 280 LNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIP-TEIGGLKNLEYLFLGYNRLQGSIP 346 (349)
Q Consensus 280 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~p 346 (349)
+++|++|++++|.+.+ .+ .+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|++.+..|
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 8999999999999987 33 67889999999999999985332 467889999999999999876544
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=1.1e-14 Score=125.69 Aligned_cols=182 Identities=15% Similarity=0.082 Sum_probs=118.0
Q ss_pred ccccCeeeecCcccccCcchhcc-----CCCCCCEEEcCCccCCCccchhc-cccCCCCeeecCCCcCCCCCchhh----
Q 038106 161 SHSLEDFKMHNCNVSGGIPEEIS-----NLTNLTTIDLGGNMLNGSIPITL-SKLQKLQGLRFEDNKLEGSIPDSI---- 230 (349)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~---- 230 (349)
.+.++.+++++|.++......+. ..++|++|++++|.+.+.....+ ..+++|+.|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35788889988887754333332 23688899998888875443333 345678888998888765433333
Q ss_pred -ccCCcccEEEcCCCccCCCC----hhhhhCCCCCceEecCCccCCc-----CCcccccCCCccEEEecCCcCCCCCCc-
Q 038106 231 -CRLTELYELELGGNKLFGSI----PACFSNLASLRILSLGSNELTS-----IPLTFWNLNNILYLNFSSNFFTAPLPL- 299 (349)
Q Consensus 231 -~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~- 299 (349)
...++|++|++++|.+.+.. ...+..+++|++|++++|.+.+ ++..+..+++|++|++++|.+++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 24577888999888775432 2334667888889998888765 345566777888888888888764332
Q ss_pred ---cccccccccEEEccCCeeeeccCcccccCC--C---CceEe--cCCcccc
Q 038106 300 ---EIGNLKVLVGMDFSMNNFSGVIPTEIGGLK--N---LEYLF--LGYNRLQ 342 (349)
Q Consensus 300 ---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~---L~~l~--l~~~~~~ 342 (349)
.+...++|+.|++++|.+.+.....+..+. . ++.+. +.++.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 234568888888888888765444443332 1 55555 5555543
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=2.4e-14 Score=123.62 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=73.3
Q ss_pred ccccceeeccCceeccccCcccc----ccCCcccEEeccCCcCCCccchhhc-cCCCceEEEccCCcccccccccc----
Q 038106 33 VSTLKSLELQDNSLFGSISSIID----VRLPNLERLLLWGNNFSGTIPRFIF-NASKLSILEFSKNSFSGFIPNTF---- 103 (349)
Q Consensus 33 ~~~L~~L~l~~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~---- 103 (349)
.+.|+.|++++|.+.......+. ...++|+.|++++|.+.+.....+. .+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45678888888877543333322 1235788888888877654333332 35678888888887764333333
Q ss_pred -cCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCcccc
Q 038106 104 -GNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDC 150 (349)
Q Consensus 104 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 150 (349)
...++|++|++++|.+..... ..+...+...++|++|++++|.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGV-AVLMEGLAGNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHH-HHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred HhcCCccceeeCCCCCCChHHH-HHHHHHHhcCCCcCEEeCCCCCCCc
Confidence 245778888888887654321 1233345667888888888887754
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=3.3e-12 Score=97.71 Aligned_cols=106 Identities=25% Similarity=0.279 Sum_probs=77.5
Q ss_pred CCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEec
Q 038106 211 KLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFS 289 (349)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~ 289 (349)
..+.++++++.++. +|..+ .++++.|++++|.+....+..+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35678888887773 44433 3678888888888776667777778888888888888877654 35677888888888
Q ss_pred CCcCCCCCCccccccccccEEEccCCeeee
Q 038106 290 SNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
+|.+....+..+..+++|+.|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 888877555567777888888888887653
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=1.6e-10 Score=100.98 Aligned_cols=296 Identities=13% Similarity=0.144 Sum_probs=199.1
Q ss_pred cchhhcccc-ccceeeccCceeccccCccccccCCcccEEeccCCc---CCCccchhhccCCCceEEEccCCcccccccc
Q 038106 26 VPAAIFNVS-TLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNN---FSGTIPRFIFNASKLSILEFSKNSFSGFIPN 101 (349)
Q Consensus 26 ~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 101 (349)
-..+|.++. .|+.+.+..+ + ..+....+..|.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ +......
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-v-t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-V-TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-C-CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred CHhhccCCCCcCEEEEECCC-e-eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 345677774 6999999765 3 44455555689999999997653 44444567888999998887654 3334556
Q ss_pred cccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchh
Q 038106 102 TFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEE 181 (349)
Q Consensus 102 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 181 (349)
++..+.+|+.+.+... ....... .+..+..|+.+.+..+ +...... .+.. ..++.+.+...... ....+
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~-----~F~~c~~L~~i~~~~~-~~~I~~~-aF~~--~~l~~i~ip~~~~~-i~~~a 200 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADG-----MFSYCYSLHTVTLPDS-VTAIEER-AFTG--TALTQIHIPAKVTR-IGTNA 200 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTT-----TTTTCTTCCEEECCTT-CCEECTT-TTTT--CCCSEEEECTTCCE-ECTTT
T ss_pred hhhhhcccccccccce-eeeeccc-----ceecccccccccccce-eeEeccc-cccc--cceeEEEECCcccc-cccch
Confidence 7889999999999754 2233322 4778899999998664 3222222 3322 36777777654322 33445
Q ss_pred ccCCCCCCEEEcCCccCCCccch-------------hccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCC
Q 038106 182 ISNLTNLTTIDLGGNMLNGSIPI-------------TLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFG 248 (349)
Q Consensus 182 l~~~~~L~~L~l~~~~~~~~~~~-------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 248 (349)
+..+..++............... .+.....+..+.+... +......+|..+..|+.+.+..+.. .
T Consensus 201 f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~ 278 (394)
T 4gt6_A 201 FSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-S 278 (394)
T ss_dssp TTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-E
T ss_pred hhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-e
Confidence 67788888877655433211110 1111223444444332 2223446788899999999987643 3
Q ss_pred CChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCccccc
Q 038106 249 SIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGG 327 (349)
Q Consensus 249 ~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 327 (349)
....++..+++|+.+.+.. .++.+ ..+|..|.+|+.+.+..+ +......+|..|.+|+.+.+..+ +......+|.+
T Consensus 279 I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 5566788899999999964 45554 346888999999999764 55555678899999999999765 55566688999
Q ss_pred CCCCceEecCCcc
Q 038106 328 LKNLEYLFLGYNR 340 (349)
Q Consensus 328 ~~~L~~l~l~~~~ 340 (349)
|.+|+.+++.++.
T Consensus 356 C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 356 CTALNNIEYSGSR 368 (394)
T ss_dssp CTTCCEEEESSCH
T ss_pred CCCCCEEEECCce
Confidence 9999999999875
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=1.1e-11 Score=95.12 Aligned_cols=104 Identities=27% Similarity=0.352 Sum_probs=80.6
Q ss_pred CCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcc-cccCCCccEEEecC
Q 038106 212 LQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLT-FWNLNNILYLNFSS 290 (349)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 290 (349)
-+.++++++.++ .+|..+. ++|+.|++++|.+....+..+..+++|++|++++|+++.++.. +..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888776 4554432 7888888888888777677788888888888888888887654 56788888888888
Q ss_pred CcCCCCCCccccccccccEEEccCCeee
Q 038106 291 NFFTAPLPLEIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 318 (349)
|.+....+..+..+++|+.|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8888755555778888888888888776
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=3.9e-11 Score=91.73 Aligned_cols=105 Identities=32% Similarity=0.404 Sum_probs=74.7
Q ss_pred CCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCC
Q 038106 188 LTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGS 267 (349)
Q Consensus 188 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (349)
.+.++++++.+.+ .+..+ .++++.|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4567777776663 33333 26777777777777766666777777888888888777766555667778888888888
Q ss_pred ccCCcCCc-ccccCCCccEEEecCCcCCC
Q 038106 268 NELTSIPL-TFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 268 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 295 (349)
|.+..++. .+..+++|++|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 88777654 46677888888888887765
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.27 E-value=1.1e-09 Score=95.11 Aligned_cols=140 Identities=11% Similarity=0.108 Sum_probs=64.6
Q ss_pred CCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceE
Q 038106 184 NLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRIL 263 (349)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 263 (349)
.+.+++.+.+..+ +.......+..+..|+.+.+..+ ++.....++..+.+|+.+.+..+ +......++..|.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 3444555544332 22222334445555555555443 22233344555555555555443 222333445555556666
Q ss_pred ecCCccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccC
Q 038106 264 SLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGL 328 (349)
Q Consensus 264 ~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 328 (349)
.+.++.++.+ ..+|..|.+|+.+.+..+ +......+|.+|.+|+.+.+..+ +......+|..+
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 5555555543 234555555665555432 33333344555555555555433 332333444444
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=4.9e-11 Score=91.50 Aligned_cols=104 Identities=27% Similarity=0.358 Sum_probs=75.8
Q ss_pred CEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCc
Q 038106 189 TTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSN 268 (349)
Q Consensus 189 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 268 (349)
+.++++++.+. .++..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777665 3343332 67777888887777666777777888888888888777655555677788888888888
Q ss_pred cCCcCCcc-cccCCCccEEEecCCcCCC
Q 038106 269 ELTSIPLT-FWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 269 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 295 (349)
.+..++.. +..+++|++|++++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88876654 6778888888888888776
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.17 E-value=2.3e-11 Score=104.18 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=6.0
Q ss_pred CCCcEEeCCCC
Q 038106 136 KSLTHIGLSNN 146 (349)
Q Consensus 136 ~~L~~L~l~~~ 146 (349)
..++.|.+...
T Consensus 107 ~~v~~L~lg~~ 117 (362)
T 2ra8_A 107 PSLKQITIGXW 117 (362)
T ss_dssp GGCSEEEECCC
T ss_pred hhcceEEEccc
Confidence 34566666543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=1.4e-08 Score=88.11 Aligned_cols=301 Identities=10% Similarity=0.070 Sum_probs=175.6
Q ss_pred hhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCC
Q 038106 5 EIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASK 84 (349)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (349)
.+....+|+.+.+... ++..-..+|.+|.+|+.+++..+ + ..+....+..+ +|+.+.+..+ +......+|.. .+
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v-~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-V-TSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-C-CEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-c-eEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 4667788999999653 44344567999999999999765 3 33444444455 6888777644 33233334444 47
Q ss_pred ceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCccccc
Q 038106 85 LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSL 164 (349)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 164 (349)
|+.+.+..+. .......+.++ +++.+.+..+ +...... .+..+..++.+.+..............
T Consensus 115 L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~-----~f~~~~~l~~~~~~~~~~~~~~~~~~~------- 179 (379)
T 4h09_A 115 LDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDG-----IGYKAENLEKIEVSSNNKNYVAENYVL------- 179 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSC-----TTTTCTTCCEEEECTTCSSEEEETTEE-------
T ss_pred cccccCCCcc-ccccccccccc-eeeeeeccce-eeccccc-----hhcccccccccccccccceeeccccee-------
Confidence 9999887653 22333445443 5666655443 2222211 355667777776654432211100000
Q ss_pred CeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCC
Q 038106 165 EDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGN 244 (349)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 244 (349)
... .......+..+..+..+.+.... .......+..+..++.+.+... +......++..+..|+.+.+..+
T Consensus 180 ----~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~ 250 (379)
T 4h09_A 180 ----YNK---NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN 250 (379)
T ss_dssp ----EET---TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT
T ss_pred ----ccc---ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC
Confidence 000 00111123344455555554322 1123344556677777777654 22234456677788888888765
Q ss_pred ccCCCChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCc
Q 038106 245 KLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPT 323 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 323 (349)
+......++..+.+|+.+.+... +..+ ..++..|++|+.+.+.++.+......+|.+|.+|+.+.+..+ +......
T Consensus 251 -v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 327 (379)
T 4h09_A 251 -VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVY 327 (379)
T ss_dssp -CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred -ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHH
Confidence 33345566777788888887643 4443 335677888888888877776656667778888888888654 4445556
Q ss_pred ccccCCCCceEecCC
Q 038106 324 EIGGLKNLEYLFLGY 338 (349)
Q Consensus 324 ~l~~~~~L~~l~l~~ 338 (349)
+|.+|.+|+.+.+..
T Consensus 328 aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 328 AFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCCCCCCT
T ss_pred HhhCCCCCCEEEECC
Confidence 778888888877743
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=1.1e-09 Score=94.04 Aligned_cols=104 Identities=23% Similarity=0.211 Sum_probs=79.1
Q ss_pred CeeecCCC-cCCCCCchhhccCCcccEEEcCC-CccCCCChhhhhCCCCCceEecCCccCCcC-CcccccCCCccEEEec
Q 038106 213 QGLRFEDN-KLEGSIPDSICRLTELYELELGG-NKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFS 289 (349)
Q Consensus 213 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~ 289 (349)
..++.+++ .++ .+|. +..+++|+.|+|++ |.+....+..+..+++|+.|++++|.+..+ +..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45677776 676 4666 78888888999986 887766667788888888888888888885 4467788888888888
Q ss_pred CCcCCCCCCccccccccccEEEccCCeeee
Q 038106 290 SNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
+|.+....+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888875554555444 8888888887753
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=4.7e-10 Score=95.99 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=62.5
Q ss_pred hhhccccccceeeccCceecc--------ccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccc
Q 038106 28 AAIFNVSTLKSLELQDNSLFG--------SISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFI 99 (349)
Q Consensus 28 ~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 99 (349)
.+...+++|+.|.+....... .....+...+|+|+.|+++++.-. ..+. + .+++|++|.+..+.+....
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH
Confidence 344456677777775432210 011122235677888888766311 1222 2 2677888888777665433
Q ss_pred ccccc--CCCCCCEEEccCC--cccCCCccchhcccc--cCCCCCcEEeCCCCcccc
Q 038106 100 PNTFG--NLRNLQKLRLYDN--YLTSSTPELSFLSSL--SNCKSLTHIGLSNNPLDC 150 (349)
Q Consensus 100 ~~~~~--~~~~L~~L~l~~~--~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~ 150 (349)
...+. .+|+|++|+++.+ ..............+ ..+|+|++|++.+|.+..
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~ 266 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence 33333 5788888877532 111110000111112 347889999888877653
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.93 E-value=3.8e-09 Score=90.55 Aligned_cols=105 Identities=21% Similarity=0.193 Sum_probs=76.6
Q ss_pred CeeeecCc-ccccCcchhccCCCCCCEEEcCC-ccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcC
Q 038106 165 EDFKMHNC-NVSGGIPEEISNLTNLTTIDLGG-NMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELG 242 (349)
Q Consensus 165 ~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 242 (349)
..++.+++ .++ .+|. +..+++|++|++++ |.+.+..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34566666 555 3555 77778888888885 77776666677788888888888888877777777888888888888
Q ss_pred CCccCCCChhhhhCCCCCceEecCCccCCc
Q 038106 243 GNKLFGSIPACFSNLASLRILSLGSNELTS 272 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 272 (349)
+|.+....+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8887755555555444 8888888877664
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.78 E-value=1.4e-09 Score=84.20 Aligned_cols=115 Identities=9% Similarity=0.138 Sum_probs=64.9
Q ss_pred hhccccCCCCeeecCCC-cCCCC----CchhhccCCcccEEEcCCCccCCCCh----hhhhCCCCCceEecCCccCCc--
Q 038106 204 ITLSKLQKLQGLRFEDN-KLEGS----IPDSICRLTELYELELGGNKLFGSIP----ACFSNLASLRILSLGSNELTS-- 272 (349)
Q Consensus 204 ~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~-- 272 (349)
..+...++|++|++++| .+... +...+...++|++|++++|.+.+... ..+...+.|++|++++|.+.+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34555677777777777 66532 22334455667777777776654322 223344666777777666655
Q ss_pred ---CCcccccCCCccEEEe--cCCcCCCCCCc----cccccccccEEEccCCeee
Q 038106 273 ---IPLTFWNLNNILYLNF--SSNFFTAPLPL----EIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 273 ---~~~~~~~~~~L~~L~l--~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~ 318 (349)
+...+..+++|++|++ ++|.+.+.... .+...++|+.|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445555666666666 55666553222 2233455666666666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=3.3e-09 Score=82.06 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=73.7
Q ss_pred hhccCCCCCCEEEcCCc-cCCCcc----chhccccCCCCeeecCCCcCCCCC----chhhccCCcccEEEcCCCccCCCC
Q 038106 180 EEISNLTNLTTIDLGGN-MLNGSI----PITLSKLQKLQGLRFEDNKLEGSI----PDSICRLTELYELELGGNKLFGSI 250 (349)
Q Consensus 180 ~~l~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~ 250 (349)
..+...++|++|++++| .+.+.. ...+...++|++|++++|.+.... ...+...++|++|++++|.+.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 44556777777888777 666432 233445577777888777766432 233445567777888777766432
Q ss_pred ----hhhhhCCCCCceEec--CCccCCc-----CCcccccCCCccEEEecCCcCCC
Q 038106 251 ----PACFSNLASLRILSL--GSNELTS-----IPLTFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 251 ----~~~~~~~~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~ 295 (349)
...+...++|++|++ ++|.+.+ +...+..+++|++|++++|.+..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 334455667778877 6677665 44455666777788877777654
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.55 E-value=2.5e-08 Score=75.21 Aligned_cols=92 Identities=13% Similarity=0.119 Sum_probs=70.1
Q ss_pred cchhhccccccceeeccCceeccccCccccccCCcccEEeccCCc-CCCccchhhccC----CCceEEEccCCc-ccccc
Q 038106 26 VPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNN-FSGTIPRFIFNA----SKLSILEFSKNS-FSGFI 99 (349)
Q Consensus 26 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~ 99 (349)
+|.....-..|+.|++++|.+++.....+ ..+++|++|++++|. +++.....+..+ ++|++|++++|. +++..
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 34333334579999999998876666555 489999999999995 776555666653 479999999985 77666
Q ss_pred cccccCCCCCCEEEccCCc
Q 038106 100 PNTFGNLRNLQKLRLYDNY 118 (349)
Q Consensus 100 ~~~~~~~~~L~~L~l~~~~ 118 (349)
...+..+++|++|++++|.
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 6667889999999999985
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=3.2e-08 Score=74.57 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=14.3
Q ss_pred CCEEEcCCccCCCccchhccccCCCCeeecCCC
Q 038106 188 LTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN 220 (349)
Q Consensus 188 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 220 (349)
|++||++++.+++.....+..+++|++|++++|
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 444444444444333333344444444444444
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=2.8e-07 Score=74.91 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=27.1
Q ss_pred CCCCceEecCCccCCcCC---cccccCCCccEEEecCCcCCCCCCccccccc--cccEEEccCCeeee
Q 038106 257 LASLRILSLGSNELTSIP---LTFWNLNNILYLNFSSNFFTAPLPLEIGNLK--VLVGMDFSMNNFSG 319 (349)
Q Consensus 257 ~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~ 319 (349)
+++|++|++++|.+..++ ..+..+++|+.|+|++|.+.+. ..+..+. +|+.|++++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 444555555555444422 2333445555555555554442 1122222 55555555555443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=2.4e-06 Score=69.44 Aligned_cols=106 Identities=27% Similarity=0.296 Sum_probs=71.2
Q ss_pred hhccccccE--EecCCcccc---CccchhhccccccceeeccCceeccc--cCccccccCCcccEEeccCCcCCCccchh
Q 038106 6 IGNLRNLER--LGLGLNKLI---GTVPAAIFNVSTLKSLELQDNSLFGS--ISSIIDVRLPNLERLLLWGNNFSGTIPRF 78 (349)
Q Consensus 6 ~~~~~~L~~--L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 78 (349)
+...+.|+. ++++.+... ..+.-...++++|+.|+|++|.+... .+..+ ..+++|+.|++++|.+.+. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSG--GG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCc--hh
Confidence 555566665 556665322 11222234688999999999998553 23333 4799999999999998754 22
Q ss_pred hccCC--CceEEEccCCccccccc-------ccccCCCCCCEEEc
Q 038106 79 IFNAS--KLSILEFSKNSFSGFIP-------NTFGNLRNLQKLRL 114 (349)
Q Consensus 79 ~~~~~--~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l 114 (349)
+..+. +|++|++++|.+....+ ..+..+|+|+.|+-
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 33333 89999999999875333 23567899999864
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.77 E-value=6.1e-06 Score=63.39 Aligned_cols=113 Identities=14% Similarity=0.212 Sum_probs=66.8
Q ss_pred hccccCCCCeeecCCC-cCCCC----CchhhccCCcccEEEcCCCccCCCCh----hhhhCCCCCceEecCCccCCc---
Q 038106 205 TLSKLQKLQGLRFEDN-KLEGS----IPDSICRLTELYELELGGNKLFGSIP----ACFSNLASLRILSLGSNELTS--- 272 (349)
Q Consensus 205 ~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~--- 272 (349)
.+...+.|++|+|+++ .+... +..++...+.|+.|+|++|.+.+... +.+..-..|++|+++.|.|..
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445577888888775 55532 23344556777888888877654333 333345677777777777765
Q ss_pred --CCcccccCCCccEEEecCCc---CCCC----CCccccccccccEEEccCCee
Q 038106 273 --IPLTFWNLNNILYLNFSSNF---FTAP----LPLEIGNLKVLVGMDFSMNNF 317 (349)
Q Consensus 273 --~~~~~~~~~~L~~L~l~~~~---~~~~----~~~~~~~~~~L~~L~l~~~~~ 317 (349)
+...+...+.|++|+++++. +.+. +...+..-+.|+.|+++.+.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 44556666677777776542 2321 112233446677777766543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.63 E-value=2.1e-05 Score=60.41 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=69.8
Q ss_pred hccCCCCCCEEEcCCc-cCCCc----cchhccccCCCCeeecCCCcCCCC----CchhhccCCcccEEEcCCCccCCCCh
Q 038106 181 EISNLTNLTTIDLGGN-MLNGS----IPITLSKLQKLQGLRFEDNKLEGS----IPDSICRLTELYELELGGNKLFGSIP 251 (349)
Q Consensus 181 ~l~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~ 251 (349)
.+..-+.|++|+++++ .+.+. +...+....+|+.|+|++|.+.+. +..++...+.|++|+|++|.+.+...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445567788888764 66533 233445557788888888877643 23344456778888888887765433
Q ss_pred h----hhhCCCCCceEecCCc---cCCc-----CCcccccCCCccEEEecCCcC
Q 038106 252 A----CFSNLASLRILSLGSN---ELTS-----IPLTFWNLNNILYLNFSSNFF 293 (349)
Q Consensus 252 ~----~~~~~~~L~~L~l~~~---~~~~-----~~~~~~~~~~L~~L~l~~~~~ 293 (349)
. ++..-..|++|+++++ .+.+ +...+...++|++|+++.+.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3 3334456888888754 3332 444566677788888776554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.0032 Score=44.94 Aligned_cols=56 Identities=25% Similarity=0.293 Sum_probs=42.5
Q ss_pred ceEecCCccCC--cCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeee
Q 038106 261 RILSLGSNELT--SIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 261 ~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 318 (349)
..++-++.+++ .+|..+. ++|++|+|++|.+.......+..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777777 6775432 46889999999888866667788888999999888664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.30 E-value=0.0093 Score=42.51 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=42.6
Q ss_pred EEEcCCCccC-CCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEecCCcCCC
Q 038106 238 ELELGGNKLF-GSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 238 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 295 (349)
.++.++..++ ..++..+ .++++.|+|++|.++.++. .|..+++|+.|+|.+|++.-
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 6777777665 2334332 2579999999999999865 56788999999999998765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.03 E-value=2.9 Score=27.80 Aligned_cols=9 Identities=0% Similarity=0.058 Sum_probs=3.2
Q ss_pred cCCCCeeec
Q 038106 209 LQKLQGLRF 217 (349)
Q Consensus 209 ~~~L~~L~l 217 (349)
|.+|+.+.+
T Consensus 19 c~~L~~i~i 27 (100)
T 2lz0_A 19 NTVIREITV 27 (100)
T ss_dssp CTTCCCEEE
T ss_pred CCCCcEEEc
Confidence 333333333
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.08 E-value=3 Score=27.70 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=31.7
Q ss_pred cCCcC-CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCC
Q 038106 269 ELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMN 315 (349)
Q Consensus 269 ~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 315 (349)
.++.+ ..+|..|.+|+.+.+..+ +......+|..|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34443 336778888888888754 44445567788888888888765
Done!