BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038108
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2GBQ6|DNAJ_LACF3 Chaperone protein DnaJ OS=Lactobacillus fermentum (strain NBRC 3956
/ LMG 18251) GN=dnaJ PE=3 SV=1
Length = 386
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 5 YVCSEEERELGRQQAPGSCPYCGGKVLAIDFESQCRFC 42
YV + + +G Q+ CP CGGK ID QC C
Sbjct: 178 YVLRQRQTMMGMMQSQEVCPTCGGKGQVIDPADQCDTC 215
>sp|B1LA51|DNLJ_THESQ DNA ligase OS=Thermotoga sp. (strain RQ2) GN=ligA PE=3 SV=1
Length = 688
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 11 ERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR 61
E+E+ + P CP CGGKV +D E C P C K+ +L SR
Sbjct: 400 EKEI---KPPDKCPVCGGKVGKLDPEEVALRCLNPHCPAKLKRALRTLVSR 447
>sp|A5IKX0|DNLJ_THEP1 DNA ligase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 /
DSM 13995) GN=ligA PE=3 SV=1
Length = 688
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 11 ERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR 61
E+E+ + P CP CGGKV +D E C P C K+ +L SR
Sbjct: 400 EKEI---KPPDKCPVCGGKVGKLDPEEVALRCLNPHCPAKLKRALRTLVSR 447
>sp|Q8U221|SYM_PYRFU Methionine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=metG PE=3 SV=1
Length = 724
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 7 CSEEERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLC 59
C ++R L + G+CPYCG + D QC C P+ I + C+ C
Sbjct: 127 CEHDKRFLPDRFVIGTCPYCGAENQRGD---QCEVCGRPLTPEILIEPRCAFC 176
>sp|Q9V011|SYM_PYRAB Methionine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=metG PE=1 SV=1
Length = 722
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 7 CSEEERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR 61
C ++ L + G+CPYCG + D QC C P+ I C++C R
Sbjct: 127 CEHDKMFLPDRFVIGTCPYCGAEDQKGD---QCEVCGRPLTPEILINPRCAICGR 178
>sp|B7IDX6|DNLJ_THEAB DNA ligase OS=Thermosipho africanus (strain TCF52B) GN=ligA PE=3
SV=1
Length = 665
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 10 EERELGRQ---QAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKY 54
+E+ G++ + P SCP CGGKV I E C P C K++
Sbjct: 389 KEKRTGKELEIEIPKSCPICGGKVGKISEEEVAIRCLNPHCPQKLKRH 436
>sp|Q1WSH6|DNLJ_LACS1 DNA ligase OS=Lactobacillus salivarius (strain UCC118) GN=ligA PE=3
SV=1
Length = 672
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 18 QAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR 61
Q P CP CG K++ +D E R C P C + K+ SR
Sbjct: 399 QIPTECPECGAKLVHLDDEVALR-CINPQCPALVKESLTHFASR 441
>sp|O58721|SYM_PYRHO Methionine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=metG PE=3 SV=1
Length = 723
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 7 CSEEERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR 61
C ++ L + G+CP+CG + D QC C P+ I C+LC R
Sbjct: 127 CEHDKMFLPDRFVIGTCPFCGAENQRGD---QCEVCGRPLTPEILINPRCALCGR 178
>sp|A8F541|DNLJ_THELT DNA ligase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385
/ TMO) GN=ligA PE=3 SV=1
Length = 678
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 18 QAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR 61
+ P CP C GKV ID E C P C K+ + SR
Sbjct: 401 EIPSKCPVCSGKVGKIDSEDVALRCLNPHCPAKLKRALETFVSR 444
>sp|A9KPL0|DNLJ_CLOPH DNA ligase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM
18823 / ISDg) GN=ligA PE=3 SV=1
Length = 653
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 15 GRQQAPGSCPYCGG-KVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR 61
G P +CP CGG ++ D + + +C P C K K F SR
Sbjct: 378 GHLPIPKTCPVCGGDTMIKQDSDVKSLYCMNPECLAKKIKSFTHFVSR 425
>sp|Q5JDZ7|SYM_PYRKO Methionine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=metG PE=3 SV=1
Length = 741
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 7 CSEEERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLC 59
C ++ L + G+CPYCG + D QC C P+ I C++C
Sbjct: 127 CEHDKMFLPDRYVIGTCPYCGAENQRGD---QCEVCGHPLTPEILINPRCNIC 176
>sp|Q9WXV5|DNLJ_THEMA DNA ligase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=ligA PE=3 SV=1
Length = 688
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 11 ERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR 61
E+E+ + P CP CGGKV ++ + C P C K+ +L SR
Sbjct: 400 EKEI---KPPDKCPVCGGKVGKLNPDEVAIRCLNPHCPAKLKRALRTLVSR 447
>sp|Q8PXH2|DP2L_METMA DNA polymerase II large subunit OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=polC PE=3 SV=1
Length = 1152
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 7 CSEEERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR-RLEL 65
C E+ R R G+CP CGG V+ E R +L I I ++Y S +R R+EL
Sbjct: 1069 CGEKFR---RPPLTGACPKCGGNVVLTVHEGAVR-KYLEISKEIGERYGVSSYTRQRIEL 1124
>sp|Q8THG5|DP2L_METAC DNA polymerase II large subunit OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=polC PE=3
SV=1
Length = 1145
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 7 CSEEERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR-RLEL 65
C E+ R R G+CP CGG V+ E R +L I I ++Y S +R R+EL
Sbjct: 1062 CGEKFR---RPPLTGACPKCGGNVVLTVHEGAVR-KYLEISKEIGERYGVSSYTRQRIEL 1117
>sp|Q46E19|DP2L_METBF DNA polymerase II large subunit OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=polC PE=3 SV=1
Length = 1146
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 16 RQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKY-FCSLCSRRLEL 65
R G+CP CGG V+ E R +L I I K+Y S +R+EL
Sbjct: 1069 RPPLTGACPKCGGNVVLTVHEGAVR-KYLEISKEIGKRYGVSSYTQQRIEL 1118
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster
GN=Topors PE=1 SV=1
Length = 1038
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 8 SEEERELGRQQAPGSCPYCGGKVLAIDFESQC--RFCFLPICYNIKKKYFCSLCSR 61
+EE + R P +C C + F C +FCF +C K K C LC +
Sbjct: 87 AEENGTVERNSPPPNCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQ 142
>sp|Q8N1G0|ZN687_HUMAN Zinc finger protein 687 OS=Homo sapiens GN=ZNF687 PE=1 SV=1
Length = 1237
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 1 MCLVYVCS-EEERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKK--YFCS 57
M L CS + + + + P CP CGG L +F++ R C ++ ++ Y C
Sbjct: 712 MMLPNRCSFSAHQRMHKNRPPHVCPECGGNFLQANFQTHLR----EACLHVSRRVGYRCP 767
Query: 58 LCS 60
CS
Sbjct: 768 SCS 770
>sp|Q12TF2|DP2L_METBU DNA polymerase II large subunit OS=Methanococcoides burtonii (strain
DSM 6242) GN=polC PE=3 SV=2
Length = 1145
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 7 CSEEERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKY-FCSLCSRRLEL 65
C + + R GSCP CGG+V+ E + +L + I ++Y S +R+EL
Sbjct: 1064 CVKCAAKFRRPPLTGSCPKCGGRVILTVHEGAVK-KYLQVSIKIAEEYNVSSYTKQRIEL 1122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.145 0.507
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,863,598
Number of Sequences: 539616
Number of extensions: 862221
Number of successful extensions: 3029
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3020
Number of HSP's gapped (non-prelim): 20
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)