Query 038108
Match_columns 67
No_of_seqs 49 out of 51
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 12:55:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k4x_A 30S ribosomal protein S 93.5 0.038 1.3E-06 31.7 1.9 38 7-63 9-46 (55)
2 3j20_Y 30S ribosomal protein S 92.0 0.12 4E-06 29.0 2.6 35 10-62 12-46 (50)
3 2fiy_A Protein FDHE homolog; F 91.3 0.083 2.9E-06 38.7 1.8 45 18-62 180-231 (309)
4 3o9x_A Uncharacterized HTH-typ 89.2 0.86 2.9E-05 27.6 4.9 43 22-64 4-47 (133)
5 3ga8_A HTH-type transcriptiona 87.7 1.2 4E-05 25.9 4.6 41 22-64 4-47 (78)
6 3u5c_f 40S ribosomal protein S 85.9 0.62 2.1E-05 30.6 3.0 41 6-64 107-149 (152)
7 2jr6_A UPF0434 protein NMA0874 82.9 0.82 2.8E-05 27.0 2.4 29 21-64 9-37 (68)
8 2js4_A UPF0434 protein BB2007; 82.7 0.98 3.4E-05 26.8 2.7 29 21-64 9-37 (70)
9 2hf1_A Tetraacyldisaccharide-1 81.9 0.99 3.4E-05 26.6 2.4 28 22-64 10-37 (68)
10 1k3x_A Endonuclease VIII; hydr 80.8 1 3.6E-05 31.6 2.7 26 22-60 236-261 (262)
11 2xzf_A Formamidopyrimidine-DNA 80.2 1.2 4.1E-05 31.4 2.8 27 22-61 244-270 (271)
12 3u6p_A Formamidopyrimidine-DNA 79.5 1.2 4.3E-05 31.5 2.7 27 21-60 246-272 (273)
13 1k82_A Formamidopyrimidine-DNA 79.2 1.3 4.3E-05 31.3 2.7 26 22-60 242-267 (268)
14 1ee8_A MUTM (FPG) protein; bet 78.5 1.3 4.5E-05 31.2 2.6 28 21-61 236-263 (266)
15 2pk7_A Uncharacterized protein 77.8 1.2 4.2E-05 26.3 1.9 29 21-64 9-37 (69)
16 2lcq_A Putative toxin VAPC6; P 77.2 1.3 4.5E-05 28.4 2.1 30 5-34 133-162 (165)
17 2jny_A Uncharacterized BCR; st 76.4 1.9 6.4E-05 25.4 2.5 29 21-64 11-39 (67)
18 2kvh_A Zinc finger and BTB dom 75.6 1 3.5E-05 19.2 0.9 13 52-64 2-14 (27)
19 1qyp_A RNA polymerase II; tran 73.7 3.6 0.00012 22.6 3.1 41 20-65 15-55 (57)
20 1pft_A TFIIB, PFTFIIBN; N-term 73.6 2.2 7.6E-05 22.7 2.1 30 21-64 6-35 (50)
21 3w0f_A Endonuclease 8-like 3; 72.7 1.5 5.2E-05 31.9 1.7 30 22-62 253-282 (287)
22 1rik_A E6APC1 peptide; E6-bind 72.2 1.4 4.9E-05 18.7 0.9 13 52-64 1-13 (29)
23 1vd4_A Transcription initiatio 71.1 0.72 2.5E-05 24.4 -0.3 39 19-65 13-51 (62)
24 2kdx_A HYPA, hydrogenase/ureas 71.1 2.6 8.8E-05 26.1 2.3 13 17-29 86-99 (119)
25 2m0d_A Zinc finger and BTB dom 71.0 1.6 5.3E-05 18.4 0.9 13 52-64 2-14 (30)
26 3a43_A HYPD, hydrogenase nicke 70.3 1.3 4.4E-05 28.7 0.7 11 20-30 107-117 (139)
27 2m0f_A Zinc finger and BTB dom 70.2 1.7 5.7E-05 18.3 0.9 13 52-64 1-13 (29)
28 2kpi_A Uncharacterized protein 70.2 4.1 0.00014 23.0 2.8 27 21-64 11-39 (56)
29 2d8y_A Eplin protein; LIM doma 69.9 0.73 2.5E-05 26.7 -0.5 42 18-65 13-54 (91)
30 2lvu_A Zinc finger and BTB dom 72.7 0.94 3.2E-05 19.2 0.0 13 52-64 1-13 (26)
31 2kvf_A Zinc finger and BTB dom 68.9 1.8 6.1E-05 18.4 0.9 13 52-64 2-14 (28)
32 1srk_A Zinc finger protein ZFP 68.4 1.9 6.3E-05 19.4 0.9 14 51-64 5-18 (35)
33 3f6q_B LIM and senescent cell 67.5 1 3.5E-05 24.2 -0.2 41 18-65 9-51 (72)
34 1a7i_A QCRP2 (LIM1); LIM domai 66.5 1.4 4.9E-05 24.7 0.3 42 18-65 5-46 (81)
35 2kvg_A Zinc finger and BTB dom 65.7 2 7E-05 18.4 0.7 13 52-64 2-14 (27)
36 2elm_A Zinc finger protein 406 65.2 3.4 0.00012 19.1 1.5 14 51-64 7-20 (37)
37 2elx_A Zinc finger protein 406 64.9 2.2 7.7E-05 18.9 0.8 14 51-64 5-18 (35)
38 2xzm_9 RPS31E; ribosome, trans 64.3 5.4 0.00019 27.4 3.0 41 5-63 101-141 (189)
39 3pwf_A Rubrerythrin; non heme 63.3 5.7 0.00019 26.4 2.9 12 18-29 151-162 (170)
40 2elq_A Zinc finger protein 406 61.0 3 0.0001 18.8 0.9 14 51-64 7-20 (36)
41 1ard_A Yeast transcription fac 60.3 1.5 5.1E-05 18.5 -0.3 11 53-63 2-12 (29)
42 2lvr_A Zinc finger and BTB dom 64.4 1.9 6.4E-05 18.4 0.0 13 52-64 2-14 (30)
43 2lvt_A Zinc finger and BTB dom 64.4 1.9 6.4E-05 18.5 0.0 13 52-64 1-13 (29)
44 1vq8_Z 50S ribosomal protein L 59.1 3.9 0.00013 24.9 1.4 36 13-63 20-55 (83)
45 2elp_A Zinc finger protein 406 58.4 3.7 0.00013 18.6 0.9 14 51-64 7-20 (37)
46 2elv_A Zinc finger protein 406 57.4 4.4 0.00015 18.2 1.1 14 51-64 7-20 (36)
47 2qkd_A Zinc finger protein ZPR 56.5 6.5 0.00022 30.0 2.5 38 19-63 11-51 (404)
48 1njq_A Superman protein; zinc- 56.2 3.8 0.00013 18.9 0.8 14 51-64 4-17 (39)
49 2epc_A Zinc finger protein 32; 56.1 4.2 0.00014 18.9 0.9 14 51-64 9-22 (42)
50 2elt_A Zinc finger protein 406 56.1 4.7 0.00016 17.9 1.1 14 51-64 7-20 (36)
51 2cu8_A Cysteine-rich protein 2 55.6 2.2 7.5E-05 23.6 -0.2 41 18-64 7-47 (76)
52 2m0e_A Zinc finger and BTB dom 55.2 2.2 7.4E-05 17.8 -0.2 11 53-63 2-12 (29)
53 1nui_A DNA primase/helicase; z 55.0 4 0.00014 27.5 1.0 34 15-62 9-42 (255)
54 2els_A Zinc finger protein 406 54.7 5.3 0.00018 17.9 1.1 15 50-64 6-20 (36)
55 2a20_A Regulating synaptic mem 54.7 1.6 5.3E-05 26.2 -1.0 25 22-61 35-59 (62)
56 2d9k_A FLN29 gene product; zin 54.2 0.63 2.2E-05 26.1 -2.7 40 17-63 14-53 (75)
57 2el5_A Zinc finger protein 268 54.1 4.5 0.00015 18.8 0.9 14 51-64 8-21 (42)
58 2emb_A Zinc finger protein 473 53.7 4.8 0.00016 19.0 0.9 14 51-64 10-23 (44)
59 1klr_A Zinc finger Y-chromosom 53.6 2.2 7.4E-05 18.0 -0.4 12 53-64 2-13 (30)
60 1lko_A Rubrerythrin all-iron(I 53.4 11 0.00039 25.0 3.0 12 18-29 169-180 (191)
61 3h0g_I DNA-directed RNA polyme 53.4 5.4 0.00019 24.8 1.3 31 21-62 5-35 (113)
62 2yu5_A Zinc finger protein 473 53.0 4.6 0.00016 19.0 0.8 14 51-64 10-23 (44)
63 2epv_A Zinc finger protein 268 52.2 5 0.00017 19.1 0.9 14 51-64 10-23 (44)
64 1g47_A Pinch protein; LIM doma 51.8 6.8 0.00023 21.4 1.5 47 14-65 5-51 (77)
65 2eof_A Zinc finger protein 268 51.6 5.4 0.00019 18.6 0.9 14 51-64 10-23 (44)
66 2eow_A Zinc finger protein 347 51.1 5.5 0.00019 18.9 0.9 14 51-64 10-23 (46)
67 3iuf_A Zinc finger protein UBI 51.1 6 0.00021 19.6 1.1 14 51-64 5-18 (48)
68 2ytf_A Zinc finger protein 268 50.9 5.4 0.00019 18.9 0.9 14 51-64 10-23 (46)
69 2em7_A Zinc finger protein 224 50.8 5.7 0.00019 18.9 0.9 14 51-64 10-23 (46)
70 2elo_A Zinc finger protein 406 50.6 4 0.00014 18.4 0.3 14 51-64 7-20 (37)
71 2emi_A Zinc finger protein 484 50.5 5.8 0.0002 18.9 0.9 14 51-64 10-23 (46)
72 2yts_A Zinc finger protein 484 50.4 5.6 0.00019 18.8 0.9 14 51-64 10-23 (46)
73 2en2_A B-cell lymphoma 6 prote 50.3 5.4 0.00018 18.5 0.8 14 51-64 9-22 (42)
74 2enc_A Zinc finger protein 224 50.1 5.5 0.00019 19.0 0.8 14 51-64 10-23 (46)
75 2eoz_A Zinc finger protein 473 50.0 5.7 0.00019 19.0 0.9 14 51-64 10-23 (46)
76 2eor_A Zinc finger protein 224 50.0 5.6 0.00019 18.8 0.8 14 51-64 10-23 (46)
77 2epw_A Zinc finger protein 268 49.8 5.8 0.0002 18.8 0.9 14 51-64 10-23 (46)
78 2elr_A Zinc finger protein 406 49.7 2.8 9.6E-05 18.8 -0.3 14 51-64 7-20 (36)
79 2eq0_A Zinc finger protein 347 49.7 6 0.0002 18.8 0.9 14 51-64 10-23 (46)
80 2ytp_A Zinc finger protein 484 49.6 6 0.00021 18.9 0.9 14 51-64 10-23 (46)
81 1paa_A Yeast transcription fac 49.4 2.5 8.4E-05 18.0 -0.5 11 53-63 2-12 (30)
82 2eml_A Zinc finger protein 28 49.4 5.9 0.0002 18.8 0.9 14 51-64 10-23 (46)
83 1iml_A CRIP, cysteine rich int 49.3 2.7 9.1E-05 23.3 -0.5 12 53-64 27-38 (76)
84 1l8d_A DNA double-strand break 49.2 5.2 0.00018 24.0 0.7 12 20-31 47-58 (112)
85 2eoy_A Zinc finger protein 473 49.2 6 0.00021 18.9 0.9 14 51-64 10-23 (46)
86 2eoo_A ZFP-95, zinc finger pro 49.1 6 0.00021 18.9 0.9 14 51-64 10-23 (46)
87 2yto_A Zinc finger protein 484 49.0 6.3 0.00021 18.8 0.9 14 51-64 10-23 (46)
88 2ytj_A Zinc finger protein 484 49.0 5.8 0.0002 18.9 0.8 14 51-64 10-23 (46)
89 2em4_A Zinc finger protein 28 48.9 6 0.00021 18.9 0.8 14 51-64 10-23 (46)
90 2epu_A Zinc finger protein 32; 48.7 6.1 0.00021 18.8 0.9 15 50-64 9-23 (45)
91 2eme_A Zinc finger protein 473 48.6 6 0.00021 18.7 0.8 14 51-64 10-23 (46)
92 2ene_A Zinc finger protein 347 48.5 6.1 0.00021 18.8 0.8 14 51-64 10-23 (46)
93 2ysp_A Zinc finger protein 224 48.3 6.6 0.00023 18.6 0.9 14 51-64 10-23 (46)
94 2em8_A Zinc finger protein 224 48.3 6.3 0.00021 18.8 0.9 14 51-64 10-23 (46)
95 2eox_A Zinc finger protein 473 48.2 6.4 0.00022 18.5 0.9 14 51-64 10-23 (44)
96 2ep3_A Zinc finger protein 484 48.1 6.3 0.00022 18.7 0.9 14 51-64 10-23 (46)
97 2emh_A Zinc finger protein 484 48.1 6.1 0.00021 18.8 0.8 14 51-64 10-23 (46)
98 2emx_A Zinc finger protein 268 48.0 6.7 0.00023 18.4 0.9 14 51-64 8-21 (44)
99 2ytg_A ZFP-95, zinc finger pro 48.0 6.3 0.00022 18.7 0.8 14 51-64 10-23 (46)
100 2emj_A Zinc finger protein 28 48.0 6.2 0.00021 18.8 0.8 14 51-64 10-23 (46)
101 2emy_A Zinc finger protein 268 47.9 6.5 0.00022 18.7 0.9 14 51-64 10-23 (46)
102 1wii_A Hypothetical UPF0222 pr 47.9 18 0.0006 22.1 3.0 37 19-65 22-59 (85)
103 2emp_A Zinc finger protein 347 47.6 6.8 0.00023 18.6 0.9 14 51-64 10-23 (46)
104 2em2_A Zinc finger protein 28 47.5 6.6 0.00022 18.7 0.9 14 51-64 10-23 (46)
105 2yrj_A Zinc finger protein 473 47.5 6.9 0.00024 18.5 0.9 14 51-64 10-23 (46)
106 2ept_A Zinc finger protein 32; 47.4 6.8 0.00023 18.1 0.9 14 51-64 8-21 (41)
107 2el4_A Zinc finger protein 268 47.4 6.6 0.00023 18.6 0.9 14 51-64 10-23 (46)
108 2emm_A ZFP-95, zinc finger pro 47.3 6.6 0.00023 18.6 0.9 14 51-64 10-23 (46)
109 1twf_L ABC10-alpha, DNA-direct 47.3 13 0.00046 21.8 2.3 11 19-29 27-37 (70)
110 2em5_A ZFP-95, zinc finger pro 47.3 6.4 0.00022 18.8 0.8 14 51-64 10-23 (46)
111 2ep2_A Zinc finger protein 484 47.0 6.7 0.00023 18.6 0.9 14 51-64 10-23 (46)
112 2el6_A Zinc finger protein 268 46.9 6.6 0.00022 18.7 0.8 14 51-64 10-23 (46)
113 2en3_A ZFP-95, zinc finger pro 46.8 6.8 0.00023 18.6 0.9 14 51-64 10-23 (46)
114 2ema_A Zinc finger protein 347 46.7 7.1 0.00024 18.5 0.9 14 51-64 10-23 (46)
115 2emf_A Zinc finger protein 484 46.3 7.6 0.00026 18.5 1.0 14 51-64 10-23 (46)
116 2em9_A Zinc finger protein 224 46.3 6.8 0.00023 18.5 0.8 14 51-64 10-23 (46)
117 2en6_A Zinc finger protein 268 46.2 7.4 0.00025 18.5 0.9 15 50-64 9-23 (46)
118 2yu8_A Zinc finger protein 347 46.1 7.1 0.00024 18.5 0.8 14 51-64 10-23 (46)
119 2em3_A Zinc finger protein 28 45.8 7.2 0.00025 18.5 0.9 14 51-64 10-23 (46)
120 4rxn_A Rubredoxin; electron tr 45.6 7.9 0.00027 21.9 1.1 9 22-30 38-46 (54)
121 2yso_A ZFP-95, zinc finger pro 45.5 7.3 0.00025 18.5 0.9 14 51-64 10-23 (46)
122 2drp_A Protein (tramtrack DNA- 45.5 12 0.0004 19.0 1.7 13 51-63 8-20 (66)
123 3cng_A Nudix hydrolase; struct 45.3 13 0.00045 23.4 2.2 12 22-33 5-16 (189)
124 4ayb_P DNA-directed RNA polyme 45.2 6.5 0.00022 22.4 0.7 12 20-31 22-34 (48)
125 2ytd_A Zinc finger protein 473 45.2 7.5 0.00026 18.4 0.9 14 51-64 10-23 (46)
126 2epr_A POZ-, at HOOK-, and zin 45.1 7.5 0.00026 18.8 0.9 15 50-64 9-23 (48)
127 3h0g_L DNA-directed RNA polyme 45.0 8.8 0.0003 22.5 1.3 14 17-30 18-31 (63)
128 2en8_A Zinc finger protein 224 45.0 7.5 0.00026 18.4 0.8 14 51-64 10-23 (46)
129 1rim_A E6APC2 peptide; E6-bind 44.9 4 0.00014 18.5 -0.2 12 52-63 1-12 (33)
130 1p7a_A BF3, BKLF, kruppel-like 44.9 3.7 0.00013 18.5 -0.3 13 51-63 9-21 (37)
131 2eoj_A Zinc finger protein 268 44.3 4.7 0.00016 18.9 0.0 14 51-64 10-23 (44)
132 2en1_A Zinc finger protein 224 44.2 7.7 0.00026 18.4 0.8 14 51-64 10-23 (46)
133 2cor_A Pinch protein; LIM doma 43.7 3.8 0.00013 23.1 -0.5 42 14-64 9-52 (79)
134 1x4k_A Skeletal muscle LIM-pro 43.7 3.5 0.00012 22.3 -0.6 39 20-64 5-44 (72)
135 2ytk_A Zinc finger protein 347 43.7 8.2 0.00028 18.3 0.9 14 51-64 10-23 (46)
136 2ab3_A ZNF29; zinc finger prot 43.6 8.8 0.0003 15.8 0.9 13 52-64 1-15 (29)
137 2xjy_A Rhombotin-2; oncoprotei 43.5 3 0.0001 25.2 -1.0 38 21-64 67-105 (131)
138 2iyb_E Testin, TESS, TES; LIM 43.5 2.6 8.8E-05 22.9 -1.2 40 21-64 3-43 (65)
139 1nyp_A Pinch protein; LIM doma 43.2 2.8 9.5E-05 22.5 -1.1 39 20-65 5-43 (66)
140 2egq_A FHL1 protein; LIM domai 43.1 7.3 0.00025 21.3 0.7 39 20-64 15-57 (77)
141 1vk6_A NADH pyrophosphatase; 1 42.7 16 0.00053 25.4 2.5 15 19-33 106-120 (269)
142 1znf_A 31ST zinc finger from X 42.3 4.5 0.00015 16.7 -0.3 11 54-64 2-12 (27)
143 2dkt_A Ring finger and CHY zin 41.9 19 0.00064 24.1 2.7 38 16-60 67-105 (143)
144 2l8e_A Polyhomeotic-like prote 41.9 2.9 9.9E-05 23.4 -1.1 21 22-42 20-40 (49)
145 1zfo_A LAsp-1; LIM domain, zin 41.8 4 0.00014 20.2 -0.5 15 20-34 3-17 (31)
146 2co8_A NEDD9 interacting prote 41.6 2.4 8.1E-05 24.2 -1.6 40 18-65 13-54 (82)
147 1x63_A Skeletal muscle LIM-pro 41.5 5.5 0.00019 22.1 0.0 38 20-64 15-54 (82)
148 2ep0_A Zinc finger protein 28 41.1 9.2 0.00031 18.1 0.8 14 51-64 10-23 (46)
149 2eos_A B-cell lymphoma 6 prote 41.0 5 0.00017 18.7 -0.2 14 51-64 9-22 (42)
150 2yte_A Zinc finger protein 473 41.0 4.7 0.00016 18.7 -0.3 13 51-63 8-20 (42)
151 1yui_A GAGA-factor; complex (D 40.8 9.4 0.00032 19.0 0.9 14 51-64 22-35 (54)
152 1dl6_A Transcription factor II 40.4 11 0.00037 21.1 1.1 31 20-64 11-41 (58)
153 1fv5_A First zinc finger of U- 39.8 6.7 0.00023 19.6 0.2 14 51-64 6-19 (36)
154 2eod_A TNF receptor-associated 39.8 15 0.00052 18.9 1.6 12 52-63 9-20 (66)
155 2dj7_A Actin-binding LIM prote 39.5 5.9 0.0002 22.5 -0.1 40 19-64 14-53 (80)
156 1x61_A Thyroid receptor intera 39.2 4.5 0.00015 21.9 -0.6 40 20-64 5-44 (72)
157 1x62_A C-terminal LIM domain p 39.1 4.1 0.00014 22.8 -0.8 42 16-64 11-52 (79)
158 4ddu_A Reverse gyrase; topoiso 38.9 11 0.00038 31.1 1.4 13 20-32 8-20 (1104)
159 3uk3_C Zinc finger protein 217 38.5 11 0.00039 18.4 0.9 14 51-64 30-43 (57)
160 2enf_A Zinc finger protein 347 38.5 5.5 0.00019 19.0 -0.3 14 51-64 10-23 (46)
161 2kfq_A FP1; protein, de novo p 38.3 4.1 0.00014 18.2 -0.8 10 53-62 2-11 (32)
162 2ely_A Zinc finger protein 224 38.3 5.8 0.0002 18.9 -0.2 14 51-64 10-23 (46)
163 2ytb_A Zinc finger protein 32; 38.2 5.7 0.00019 18.4 -0.3 14 51-64 9-22 (42)
164 2zkr_2 60S ribosomal protein L 38.2 11 0.00038 24.0 1.0 25 18-60 14-38 (97)
165 2eov_A Zinc finger protein 484 38.2 5.6 0.00019 18.8 -0.3 14 51-64 10-23 (46)
166 2epq_A POZ-, at HOOK-, and zin 38.1 6.4 0.00022 18.7 -0.1 14 51-64 8-21 (45)
167 2d8z_A Four and A half LIM dom 37.9 7.3 0.00025 20.9 0.1 38 20-64 5-42 (70)
168 2ctu_A Zinc finger protein 483 37.6 16 0.00056 18.4 1.5 15 51-65 16-30 (73)
169 2eon_A ZFP-95, zinc finger pro 37.4 5.9 0.0002 19.0 -0.3 14 51-64 10-23 (46)
170 2jvm_A Uncharacterized protein 37.4 6.4 0.00022 24.3 -0.2 13 18-30 51-63 (80)
171 3lpe_B DNA-directed RNA polyme 37.2 8.6 0.0003 22.2 0.4 7 22-28 15-21 (59)
172 2eq3_A Zinc finger protein 347 37.2 6.4 0.00022 18.6 -0.2 14 51-64 10-23 (46)
173 6rxn_A Rubredoxin; electron tr 37.1 12 0.00041 20.5 0.9 16 14-29 22-39 (46)
174 2emg_A Zinc finger protein 484 37.0 5.9 0.0002 18.8 -0.3 14 51-64 10-23 (46)
175 2en7_A Zinc finger protein 268 36.9 4.6 0.00016 18.9 -0.7 13 51-63 10-22 (44)
176 1gh9_A 8.3 kDa protein (gene M 36.9 12 0.00041 22.2 1.0 19 22-42 6-24 (71)
177 1wyh_A SLIM 2, skeletal muscle 36.4 4.6 0.00016 21.8 -0.9 40 19-64 4-44 (72)
178 2yth_A Zinc finger protein 224 36.2 6.5 0.00022 18.8 -0.3 14 51-64 10-23 (46)
179 2eq1_A Zinc finger protein 347 36.0 5.7 0.0002 18.9 -0.5 13 51-63 10-22 (46)
180 2x5c_A Hypothetical protein OR 35.9 18 0.00062 23.8 1.8 20 21-40 53-72 (131)
181 3lcz_A YCZA, inhibitor of trap 35.8 3.9 0.00013 22.9 -1.3 21 13-33 2-22 (53)
182 2ytn_A Zinc finger protein 347 35.7 6.4 0.00022 18.7 -0.3 14 51-64 10-23 (46)
183 2yrm_A B-cell lymphoma 6 prote 35.6 6.8 0.00023 18.5 -0.2 14 51-64 8-21 (43)
184 2jz8_A Uncharacterized protein 35.2 12 0.0004 23.4 0.8 13 19-31 47-59 (87)
185 2eou_A Zinc finger protein 473 35.0 6.3 0.00022 18.6 -0.4 14 51-64 10-23 (44)
186 2em6_A Zinc finger protein 224 34.9 7 0.00024 18.6 -0.2 14 51-64 10-23 (46)
187 2enh_A Zinc finger protein 28 34.9 6.4 0.00022 18.8 -0.4 14 51-64 10-23 (46)
188 2apo_B Ribosome biogenesis pro 34.9 9.1 0.00031 22.3 0.2 12 20-31 18-29 (60)
189 2eoe_A Zinc finger protein 347 34.8 7.4 0.00025 18.4 -0.2 14 51-64 10-23 (46)
190 2bl6_A Nucleocapsid protein P1 34.8 6.2 0.00021 19.8 -0.5 25 4-28 3-27 (37)
191 2ds5_A CLPX, ATP-dependent CLP 34.8 10 0.00035 21.2 0.4 9 54-62 12-20 (51)
192 2elz_A Zinc finger protein 224 34.7 6.8 0.00023 18.7 -0.3 14 51-64 10-23 (46)
193 2aus_D NOP10, ribosome biogene 34.7 14 0.00049 21.5 1.1 13 20-32 17-29 (60)
194 2en9_A Zinc finger protein 28 34.7 7.1 0.00024 18.6 -0.3 14 51-64 10-23 (46)
195 1ryq_A DNA-directed RNA polyme 34.7 10 0.00035 22.7 0.4 9 20-28 23-31 (69)
196 2yuc_A TNF receptor-associated 34.5 3.4 0.00012 23.0 -1.7 40 17-63 13-54 (76)
197 2ytq_A Zinc finger protein 268 34.4 7.3 0.00025 18.6 -0.2 14 51-64 10-23 (46)
198 2jrr_A Uncharacterized protein 34.4 6.3 0.00021 23.4 -0.6 13 18-30 38-50 (67)
199 3fac_A Putative uncharacterize 34.4 18 0.0006 21.8 1.5 15 50-64 64-78 (118)
200 2epx_A Zinc finger protein 28 34.4 7.3 0.00025 18.4 -0.2 14 51-64 10-23 (47)
201 2ct1_A Transcriptional repress 34.4 14 0.00046 19.4 0.9 14 51-64 13-26 (77)
202 2riq_A Poly [ADP-ribose] polym 34.3 13 0.00043 25.2 0.9 14 18-31 76-89 (160)
203 2ct7_A Ring finger protein 31; 34.3 17 0.00058 21.2 1.4 10 23-32 28-37 (86)
204 2emz_A ZFP-95, zinc finger pro 34.2 6.2 0.00021 18.8 -0.5 14 51-64 10-23 (46)
205 1f2i_G Fusion of N-terminal 17 34.1 14 0.00049 19.0 0.9 14 51-64 47-60 (73)
206 1bbo_A Human enhancer-binding 34.0 14 0.00049 18.0 0.9 14 51-64 27-40 (57)
207 2eop_A Zinc finger protein 268 33.9 7.1 0.00024 18.4 -0.3 13 51-63 10-22 (46)
208 2eom_A ZFP-95, zinc finger pro 33.9 6.5 0.00022 18.8 -0.5 14 51-64 10-23 (46)
209 2ep1_A Zinc finger protein 484 33.7 5.8 0.0002 18.8 -0.7 13 51-63 10-22 (46)
210 2eps_A POZ-, at HOOK-, and zin 33.3 17 0.0006 18.0 1.2 14 51-64 10-23 (54)
211 4esj_A Type-2 restriction enzy 33.3 21 0.00072 26.2 2.0 34 20-65 34-68 (257)
212 1yuz_A Nigerythrin; rubrythrin 33.0 35 0.0012 23.0 2.9 12 18-29 184-195 (202)
213 2epz_A Zinc finger protein 28 33.0 7.8 0.00027 18.4 -0.3 14 51-64 10-23 (46)
214 1rut_X Flinc4, fusion protein 33.0 4.9 0.00017 26.0 -1.3 37 22-64 71-108 (188)
215 2cup_A Skeletal muscle LIM-pro 32.9 8.4 0.00029 22.1 -0.2 12 20-31 5-16 (101)
216 2jrp_A Putative cytoplasmic pr 32.8 29 0.00099 21.2 2.3 12 21-32 3-14 (81)
217 1x64_A Alpha-actinin-2 associa 32.8 7.9 0.00027 22.0 -0.3 39 19-64 24-62 (89)
218 1wig_A KIAA1808 protein; LIM d 32.5 6.2 0.00021 21.9 -0.8 35 21-64 6-42 (73)
219 2eq4_A Zinc finger protein 224 32.4 8.2 0.00028 18.2 -0.2 14 51-64 10-23 (46)
220 2eoq_A Zinc finger protein 224 32.3 7.2 0.00025 18.5 -0.5 13 51-63 10-22 (46)
221 1x3h_A Leupaxin; paxillin fami 32.2 8.8 0.0003 21.1 -0.2 39 20-65 15-53 (80)
222 2eoh_A Zinc finger protein 28 32.1 7.3 0.00025 18.6 -0.5 13 51-63 10-22 (46)
223 3axs_A Probable N(2),N(2)-dime 32.1 34 0.0011 25.2 2.9 14 18-31 261-274 (392)
224 2adr_A ADR1; transcription reg 32.0 15 0.00052 18.1 0.8 14 51-64 28-41 (60)
225 1tfi_A Transcriptional elongat 31.6 21 0.00073 19.5 1.4 16 15-30 4-19 (50)
226 2eq2_A Zinc finger protein 347 31.6 6 0.0002 18.8 -0.8 13 51-63 10-22 (46)
227 2emk_A Zinc finger protein 28 31.5 8.5 0.00029 18.3 -0.3 13 51-63 10-22 (46)
228 2dlo_A Thyroid receptor-intera 31.4 20 0.0007 19.7 1.3 39 19-64 14-52 (81)
229 1v6g_A Actin binding LIM prote 31.2 9.2 0.00031 21.2 -0.2 37 21-64 16-52 (81)
230 4bbr_M Transcription initiatio 31.1 29 0.00099 25.0 2.4 29 22-64 23-53 (345)
231 2con_A RUH-035 protein, NIN on 31.1 15 0.0005 22.3 0.7 12 18-29 28-39 (79)
232 2d9h_A Zinc finger protein 692 31.0 17 0.00057 19.1 0.9 14 51-64 36-49 (78)
233 1x5w_A Zinc finger protein 64, 30.8 16 0.00056 18.7 0.8 13 51-63 7-19 (70)
234 1x68_A FHL5 protein; four-and- 30.7 16 0.00055 20.0 0.8 42 20-64 5-46 (76)
235 2qgp_A HNH endonuclease; Q39X4 30.5 28 0.00096 21.3 2.0 13 19-31 34-46 (112)
236 1sp2_A SP1F2; zinc finger, tra 30.4 8.8 0.0003 16.5 -0.3 11 53-63 2-14 (31)
237 2dar_A PDZ and LIM domain prot 30.2 23 0.0008 20.0 1.5 40 18-64 23-62 (90)
238 2l4z_A DNA endonuclease RBBP8, 30.2 19 0.00065 22.1 1.2 39 20-64 61-99 (123)
239 1x6e_A Zinc finger protein 24; 30.1 18 0.00062 18.7 0.9 12 52-63 13-24 (72)
240 2lce_A B-cell lymphoma 6 prote 29.8 19 0.00063 18.7 0.9 41 18-64 15-56 (74)
241 4gzn_C ZFP-57, zinc finger pro 29.6 19 0.00065 19.4 1.0 14 51-64 30-43 (60)
242 2ytr_A Zinc finger protein 347 29.6 6.1 0.00021 18.7 -1.0 13 51-63 10-22 (46)
243 2avu_E Flagellar transcription 29.1 18 0.00063 25.1 1.0 13 22-34 136-148 (192)
244 2ytm_A Zinc finger protein 28 29.0 7.3 0.00025 18.6 -0.8 14 51-64 10-23 (46)
245 1ovx_A ATP-dependent CLP prote 28.8 14 0.00049 21.9 0.4 9 54-62 19-27 (67)
246 2yti_A Zinc finger protein 347 28.6 6.6 0.00022 18.7 -1.0 13 51-63 10-22 (46)
247 4e2x_A TCAB9; kijanose, tetron 28.5 39 0.0013 23.5 2.6 42 22-63 14-63 (416)
248 2xqn_T Testin, TESS; metal-bin 28.4 29 0.00099 20.5 1.7 37 20-64 63-104 (126)
249 2em0_A Zinc finger protein 224 28.3 9.6 0.00033 18.0 -0.4 13 51-63 10-22 (46)
250 1yc5_A NAD-dependent deacetyla 28.3 22 0.00075 24.2 1.3 12 20-31 145-156 (246)
251 2i5o_A DNA polymerase ETA; zin 28.3 23 0.00079 18.8 1.1 11 54-64 10-20 (39)
252 3bvo_A CO-chaperone protein HS 28.2 15 0.00051 25.0 0.4 28 19-62 9-36 (207)
253 1x4s_A Protein FON, zinc finge 28.2 24 0.0008 20.5 1.2 15 50-64 23-37 (59)
254 2l6l_A DNAJ homolog subfamily 28.0 28 0.00097 21.9 1.7 34 21-66 113-146 (155)
255 1va1_A Transcription factor SP 27.9 23 0.0008 15.9 1.0 14 51-64 6-21 (37)
256 2lt7_A Transcriptional regulat 27.6 25 0.00085 21.4 1.3 14 51-64 20-33 (133)
257 3h99_A Methionyl-tRNA syntheta 27.4 36 0.0012 25.5 2.4 22 7-28 142-163 (560)
258 2jvx_A NF-kappa-B essential mo 26.9 25 0.00087 17.5 1.1 12 53-64 3-14 (28)
259 1m2k_A Silent information regu 26.9 23 0.00078 24.3 1.2 12 20-31 142-153 (249)
260 1x6h_A Transcriptional repress 26.9 22 0.00074 18.6 0.9 14 51-64 13-26 (86)
261 3na7_A HP0958; flagellar bioge 26.7 25 0.00084 24.1 1.3 16 50-65 219-234 (256)
262 1x6m_A GFA, glutathione-depend 26.5 26 0.00089 23.2 1.4 14 51-64 96-109 (196)
263 3twl_A Formamidopyrimidine-DNA 26.2 20 0.0007 25.8 0.9 35 13-62 242-278 (310)
264 2dmi_A Teashirt homolog 3; zin 25.8 24 0.0008 19.7 0.9 14 51-64 17-30 (115)
265 1zfd_A SWI5; DNA binding motif 25.8 12 0.00041 16.1 -0.3 13 52-64 2-16 (32)
266 1q1a_A HST2 protein; ternary c 25.6 26 0.00089 24.5 1.3 11 20-30 163-173 (289)
267 2cur_A Skeletal muscle LIM-pro 25.6 10 0.00034 20.4 -0.7 38 20-64 5-42 (69)
268 2ytt_A Zinc finger protein 473 25.2 8 0.00027 18.4 -1.1 13 51-63 10-22 (46)
269 2cot_A Zinc finger protein 435 25.1 24 0.00083 18.4 0.9 41 18-64 16-57 (77)
270 3u50_C Telomerase-associated p 25.0 29 0.00099 23.3 1.4 28 19-62 41-68 (172)
271 1a1h_A QGSR zinc finger peptid 24.7 25 0.00085 18.5 0.9 14 51-64 60-73 (90)
272 1j2o_A FLIN2, fusion of rhombo 24.7 14 0.0005 21.9 -0.1 37 20-64 3-41 (114)
273 3mjh_B Early endosome antigen 24.2 27 0.00093 18.1 0.9 15 51-65 3-17 (34)
274 2rgt_A Fusion of LIM/homeobox 23.9 9 0.00031 24.3 -1.2 18 15-32 1-18 (169)
275 3ir9_A Peptide chain release f 23.6 63 0.0022 21.1 2.8 17 19-35 102-118 (166)
276 1ffk_W Ribosomal protein L37AE 23.1 13 0.00045 22.3 -0.6 17 12-28 19-35 (73)
277 2kmk_A Zinc finger protein GFI 23.1 28 0.00096 17.8 0.8 14 51-64 55-68 (82)
278 3k1f_M Transcription initiatio 22.8 53 0.0018 23.3 2.4 29 22-64 23-53 (197)
279 2eln_A Zinc finger protein 406 22.7 32 0.0011 16.9 1.0 15 50-64 6-22 (38)
280 1g25_A CDK-activating kinase a 22.6 22 0.00075 18.7 0.4 19 19-37 42-60 (65)
281 3mhs_C SAGA-associated factor 22.5 23 0.0008 22.6 0.5 14 21-34 71-84 (99)
282 4a17_Y RPL37A, 60S ribosomal p 22.5 28 0.00096 22.3 0.9 12 51-62 34-45 (103)
283 2ee8_A Protein ODD-skipped-rel 22.4 16 0.00055 20.0 -0.2 14 50-63 14-27 (106)
284 2wbs_A Krueppel-like factor 4; 22.4 30 0.001 18.1 0.9 14 51-64 63-76 (89)
285 2k9h_A Glycoprotein; hantaviru 22.2 27 0.00093 20.4 0.7 14 19-32 27-40 (57)
286 2a51_A Nucleocapsid protein; s 21.8 15 0.0005 18.6 -0.5 24 5-28 4-29 (39)
287 2ghf_A ZHX1, zinc fingers and 21.8 31 0.001 20.5 0.9 14 51-64 48-61 (102)
288 1ma3_A SIR2-AF2, transcription 21.4 45 0.0016 22.8 1.8 9 21-29 148-156 (253)
289 2dmd_A Zinc finger protein 64, 21.4 33 0.0011 18.3 0.9 14 51-64 62-75 (96)
290 3p8b_A DNA-directed RNA polyme 21.3 21 0.00073 21.9 0.1 8 22-29 37-44 (81)
291 2d8x_A Protein pinch; LIM doma 21.2 20 0.00067 19.2 -0.0 38 21-65 6-43 (70)
292 1q14_A HST2 protein; histone d 21.0 36 0.0012 25.1 1.3 12 20-31 171-182 (361)
293 2lv2_A Insulinoma-associated p 20.9 35 0.0012 19.6 1.0 38 21-64 29-67 (85)
294 2gai_A DNA topoisomerase I; zi 20.6 28 0.00096 27.4 0.7 18 15-32 567-585 (633)
295 1lv3_A Hypothetical protein YA 20.4 17 0.00057 21.7 -0.5 11 21-31 10-20 (68)
296 3hcs_A TNF receptor-associated 20.4 14 0.00047 23.2 -0.9 38 20-64 110-148 (170)
297 2yt9_A Zinc finger-containing 20.4 35 0.0012 18.1 0.9 40 19-64 6-46 (95)
298 2wbt_A B-129; zinc finger; 2.7 20.4 32 0.0011 19.6 0.8 14 51-64 72-85 (129)
299 2owo_A DNA ligase; protein-DNA 20.2 43 0.0015 26.9 1.7 15 18-32 403-417 (671)
300 1j8f_A SIRT2, sirtuin 2, isofo 20.1 39 0.0013 24.3 1.3 11 20-30 185-195 (323)
301 1bhi_A CRE-BP1, ATF-2; CRE bin 20.1 37 0.0013 15.0 0.9 14 51-64 4-19 (38)
No 1
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=93.50 E-value=0.038 Score=31.66 Aligned_cols=38 Identities=21% Similarity=0.535 Sum_probs=25.9
Q ss_pred cCCceeeeeeecCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEecccccee
Q 038108 7 CSEEERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRL 63 (67)
Q Consensus 7 cde~~kv~~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L 63 (67)
+|+ +++.+. --.||.||.++.. . ++..++.|..|+-..
T Consensus 9 v~~-gki~~~---~~fCPkCG~~~~m------------a---~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 9 IAD-GKLVRK---HRFCPRCGPGVFL------------A---EHADRYSCGRCGYTE 46 (55)
T ss_dssp CCC-CCCCCS---SCCCTTTTTTCCC------------E---ECSSEEECTTTCCCE
T ss_pred EcC-CEEEEc---cccCcCCCCceeE------------e---ccCCEEECCCCCCEE
Confidence 455 666542 4679999987722 1 445699999998653
No 2
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.05 E-value=0.12 Score=29.05 Aligned_cols=35 Identities=23% Similarity=0.620 Sum_probs=23.9
Q ss_pred ceeeeeeecCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccce
Q 038108 10 EERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRR 62 (67)
Q Consensus 10 ~~kv~~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~ 62 (67)
++||.+. .--||.||.++..++ +..++.|..||-.
T Consensus 12 ~~kv~~~---~k~CP~CG~~~fm~~---------------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 12 DGKVIRK---NKFCPRCGPGVFMAD---------------HGDRWACGKCGYT 46 (50)
T ss_dssp SSCEECS---SEECSSSCSSCEEEE---------------CSSEEECSSSCCE
T ss_pred CCEEEEe---cccCCCCCCceEEec---------------CCCeEECCCCCCE
Confidence 4566554 345999998875443 2467899999854
No 3
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=91.30 E-value=0.083 Score=38.70 Aligned_cols=45 Identities=22% Similarity=0.455 Sum_probs=33.9
Q ss_pred cCCCCCCCCCcceEEEEec-----eeeeEEEeeeEeeecc--eEEeccccce
Q 038108 18 QAPGSCPYCGGKVLAIDFE-----SQCRFCFLPICYNIKK--KYFCSLCSRR 62 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dve-----s~~rfCflP~~~k~kr--~~~Ct~C~r~ 62 (67)
...|.||-||+.-++.-+. ...|++.=.+|--.|+ +..|+.||..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4579999999999887664 5667877777755553 5688888853
No 4
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=89.18 E-value=0.86 Score=27.61 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=26.7
Q ss_pred CCCCCCcceEEEEece-eeeEEEeeeEeeecceEEeccccceee
Q 038108 22 SCPYCGGKVLAIDFES-QCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 22 ~Cp~CGG~v~a~Dves-~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
.||.||+.....+.++ ...+--.-+-.+.=..++|..||..+-
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 5999999865544433 223333344444446789999998654
No 5
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=87.73 E-value=1.2 Score=25.88 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCCCCCcc-e--EEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 22 SCPYCGGK-V--LAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 22 ~Cp~CGG~-v--~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
.||-||++ + ...|+.-.+.=.-+ -.+.=...+|+.||..+-
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~--~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKT--VLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEE--EEEEEEEEEETTTCCEEC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEE--EEcCceeEECCCCCCEEE
Confidence 59999986 3 22333333332322 224556889999998764
No 6
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=85.89 E-value=0.62 Score=30.63 Aligned_cols=41 Identities=20% Similarity=0.518 Sum_probs=29.3
Q ss_pred EcCCceeeeeeecCCCCCCC--CCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 6 VCSEEERELGRQQAPGSCPY--CGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 6 vcde~~kv~~~~~ApG~Cp~--CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
=+|+++||.+.+ -.||+ ||.+|-.++- +.|++|-.|+-.+.
T Consensus 107 ~~~~~~~~~~~~---~~c~~~~cg~g~fma~h---------------~~r~~cgkc~~t~~ 149 (152)
T 3u5c_f 107 KVDAEGKVTKLR---RECSNPTCGAGVFLANH---------------KDRLYCGKCHSVYK 149 (152)
T ss_dssp EECSSSCEECCS---CBCCSTTSCSSSBEEEC---------------SSCEEESSSSSCCE
T ss_pred EEccCCeEEECc---CcCCCccCCCceEeccc---------------CCCcccCCCceEEE
Confidence 367888887654 35999 9988766544 35788888886653
No 7
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=82.94 E-value=0.82 Score=27.00 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=21.0
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
-+||.|+|++...+. +....|+.|++.+-
T Consensus 9 L~CP~ck~~L~~~~~---------------~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQD---------------KQELWSRQAKLAYP 37 (68)
T ss_dssp CBCSSSCCBCEEETT---------------TTEEEETTTTEEEE
T ss_pred eECCCCCCcCeEeCC---------------CCEEEcCCCCcEec
Confidence 379999999876432 35667888887654
No 8
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=82.69 E-value=0.98 Score=26.79 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=20.8
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
-+||.|+|++...+. .....|+.|++.+-
T Consensus 9 L~CP~ck~~L~~~~~---------------~~~LiC~~cg~~YP 37 (70)
T 2js4_A 9 LVCPVCKGRLEFQRA---------------QAELVCNADRLAFP 37 (70)
T ss_dssp CBCTTTCCBEEEETT---------------TTEEEETTTTEEEE
T ss_pred eECCCCCCcCEEeCC---------------CCEEEcCCCCceec
Confidence 379999998875432 35667888887654
No 9
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=81.86 E-value=0.99 Score=26.63 Aligned_cols=28 Identities=21% Similarity=0.454 Sum_probs=20.6
Q ss_pred CCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 22 SCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
+||.|+|++...+. +....|+.|++.+-
T Consensus 10 ~CP~ck~~L~~~~~---------------~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 10 VCPLCKGPLVFDKS---------------KDELICKGDRLAFP 37 (68)
T ss_dssp BCTTTCCBCEEETT---------------TTEEEETTTTEEEE
T ss_pred ECCCCCCcCeEeCC---------------CCEEEcCCCCcEec
Confidence 79999999876432 45667888887654
No 10
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=80.79 E-value=1 Score=31.59 Aligned_cols=26 Identities=23% Similarity=0.706 Sum_probs=19.4
Q ss_pred CCCCCCcceEEEEeceeeeEEEeeeEeeecceEEecccc
Q 038108 22 SCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCS 60 (67)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~ 60 (67)
.||+||+++.-..+- ....|+|+.|-
T Consensus 236 pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTTLS-------------SRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEEET-------------TEEEEECTTTC
T ss_pred CCCCCCCEeEEEEEC-------------CCCeEECCCCC
Confidence 499999999887775 34556777763
No 11
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=80.24 E-value=1.2 Score=31.41 Aligned_cols=27 Identities=26% Similarity=0.797 Sum_probs=20.8
Q ss_pred CCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccc
Q 038108 22 SCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR 61 (67)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r 61 (67)
.||+||+.+.-..+- ....|+|+.|-+
T Consensus 244 pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAEIQKIKVA-------------GRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCBCEEEEET-------------TEEEEECTTTSC
T ss_pred CCCCCCCEeeEEEEC-------------CCceEECCCCCC
Confidence 499999999887775 355677887754
No 12
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=79.53 E-value=1.2 Score=31.50 Aligned_cols=27 Identities=19% Similarity=0.547 Sum_probs=20.3
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEecccc
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCS 60 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~ 60 (67)
-.||+||+.+.-..+- ...-|+|+.|-
T Consensus 246 ~pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVA-------------GRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEET-------------TEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEEC-------------CCCeEECCCCC
Confidence 4699999999877765 35567777774
No 13
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=79.17 E-value=1.3 Score=31.33 Aligned_cols=26 Identities=23% Similarity=0.839 Sum_probs=19.6
Q ss_pred CCCCCCcceEEEEeceeeeEEEeeeEeeecceEEecccc
Q 038108 22 SCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCS 60 (67)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~ 60 (67)
.||+||+.+.-..+- ....|+|+.|-
T Consensus 242 pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ 267 (268)
T 1k82_A 242 PCRVCGTPIVATKHA-------------QRATFYCRQCQ 267 (268)
T ss_dssp BCTTTCCBCEEEEET-------------TEEEEECTTTC
T ss_pred CCCCCCCEeeEEEEC-------------CCceEECCCCC
Confidence 499999999887775 35566777774
No 14
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=78.48 E-value=1.3 Score=31.25 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=21.2
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccc
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR 61 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r 61 (67)
-.||+||+.+.-..+- ....|+|+.|-+
T Consensus 236 ~pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVA-------------GRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESS-------------SCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEEC-------------CCceEECCCCCC
Confidence 3499999999887774 356678888754
No 15
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=77.82 E-value=1.2 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
-+||.|+|++...+ + +....|+.|++.+-
T Consensus 9 L~CP~ck~~L~~~~-~--------------~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 9 LACPICKGPLKLSA-D--------------KTELISKGAGLAYP 37 (69)
T ss_dssp CCCTTTCCCCEECT-T--------------SSEEEETTTTEEEE
T ss_pred eeCCCCCCcCeEeC-C--------------CCEEEcCCCCcEec
Confidence 37999999987532 2 35567888887654
No 16
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=77.22 E-value=1.3 Score=28.44 Aligned_cols=30 Identities=40% Similarity=0.759 Sum_probs=17.7
Q ss_pred EEcCCceeeeeeecCCCCCCCCCcceEEEE
Q 038108 5 YVCSEEERELGRQQAPGSCPYCGGKVLAID 34 (67)
Q Consensus 5 ~vcde~~kv~~~~~ApG~Cp~CGG~v~a~D 34 (67)
+.|..-+++-........||.||+.+.-.|
T Consensus 133 y~C~~Cg~~~~~~~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 133 YVCIGCGRKFSTLPPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp EEESSSCCEESSCCGGGBCTTTCCBEEECC
T ss_pred EECCCCCCcccCCCCCCcCCCCCCcceeCC
Confidence 445544544443333358999999875543
No 17
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=76.38 E-value=1.9 Score=25.44 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=20.7
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
-+||.|+|++.... .+....|+.|++.+-
T Consensus 11 L~CP~ck~~L~~~~---------------~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 11 LACPKDKGPLRYLE---------------SEQLLVNERLNLAYR 39 (67)
T ss_dssp CBCTTTCCBCEEET---------------TTTEEEETTTTEEEE
T ss_pred hCCCCCCCcCeEeC---------------CCCEEEcCCCCcccc
Confidence 47999999887532 245667888887654
No 18
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=75.60 E-value=1 Score=19.19 Aligned_cols=13 Identities=46% Similarity=0.999 Sum_probs=10.2
Q ss_pred ceEEeccccceee
Q 038108 52 KKYFCSLCSRRLE 64 (67)
Q Consensus 52 r~~~Ct~C~r~L~ 64 (67)
+.|.|+.||+...
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 5688999998754
No 19
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=73.66 E-value=3.6 Score=22.56 Aligned_cols=41 Identities=29% Similarity=0.444 Sum_probs=23.3
Q ss_pred CCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceeee
Q 038108 20 PGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLEL 65 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~~ 65 (67)
.-.||.||.. .|.=...|+|====| ...-|.|+.||-+-+.
T Consensus 15 ~~~Cp~Cg~~-~~~~~q~Q~rsadep----~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGND-TAYWWEMQTRAGDEP----STIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCS-EEEEEEECCSSSSCS----SEEEEEESSSCCEEEC
T ss_pred EeECCCCCCC-EEEEEEeecccCCCC----CcEEEEcCCCCCEecc
Confidence 3569999984 444445555410011 1134789999876543
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=73.64 E-value=2.2 Score=22.73 Aligned_cols=30 Identities=27% Similarity=0.573 Sum_probs=18.4
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
-.||.|||.-...|- ......|+.||..+.
T Consensus 6 ~~CP~C~~~~l~~d~--------------~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAELIYDP--------------ERGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCEEEET--------------TTTEEEESSSCCBCC
T ss_pred EeCcCCCCcceEEcC--------------CCCeEECcccCCccc
Confidence 369999993222333 234577788876553
No 21
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=72.68 E-value=1.5 Score=31.95 Aligned_cols=30 Identities=30% Similarity=0.820 Sum_probs=21.3
Q ss_pred CCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccce
Q 038108 22 SCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRR 62 (67)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~ 62 (67)
.||+||..+.-..+-. .....|+|+.|.+-
T Consensus 253 pC~~CGt~I~~~~~g~-----------~gRsTyfCp~~~~~ 282 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGE-----------NSRMTYFCPHCQKH 282 (287)
T ss_dssp BCTTTCCBCEEECSST-----------TCCCEEECTTTSCC
T ss_pred CCCCCCCEEEEEEecC-----------CCCCEEECCCcccc
Confidence 6999999998776641 12566777877653
No 22
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=72.17 E-value=1.4 Score=18.68 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=9.7
Q ss_pred ceEEeccccceee
Q 038108 52 KKYFCSLCSRRLE 64 (67)
Q Consensus 52 r~~~Ct~C~r~L~ 64 (67)
+.|.|+.|++...
T Consensus 1 k~~~C~~C~k~f~ 13 (29)
T 1rik_A 1 YKFACPECPKRFM 13 (29)
T ss_dssp CCEECSSSSCEES
T ss_pred CCccCCCCCchhC
Confidence 4688999988754
No 23
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=71.12 E-value=0.72 Score=24.42 Aligned_cols=39 Identities=18% Similarity=0.514 Sum_probs=25.4
Q ss_pred CCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceeee
Q 038108 19 APGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLEL 65 (67)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~~ 65 (67)
-|=.|+.||-...-. +.+. ......+.|.|+.||+....
T Consensus 13 k~~~C~~C~k~F~~~---~~l~-----~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDL---EANQ-----LFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp SEEECSSSCCEEEHH---HHHH-----HEETTTTEEBCSSSCCBCEE
T ss_pred CCccCCCCCchhccH---HHhH-----hhcCCCCCEECCCCCCcccc
Confidence 356799999765432 1221 23445688999999987654
No 24
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=71.07 E-value=2.6 Score=26.11 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=8.1
Q ss_pred ecCCC-CCCCCCcc
Q 038108 17 QQAPG-SCPYCGGK 29 (67)
Q Consensus 17 ~~ApG-~Cp~CGG~ 29 (67)
...+. .||.||+.
T Consensus 86 ~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 86 NALDYGVCEKCHSK 99 (119)
T ss_dssp CCSTTCCCSSSSSC
T ss_pred CCCCCCcCccccCC
Confidence 34455 77777776
No 25
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=71.05 E-value=1.6 Score=18.45 Aligned_cols=13 Identities=38% Similarity=0.984 Sum_probs=9.9
Q ss_pred ceEEeccccceee
Q 038108 52 KKYFCSLCSRRLE 64 (67)
Q Consensus 52 r~~~Ct~C~r~L~ 64 (67)
+.|.|+.|++...
T Consensus 2 k~~~C~~C~~~f~ 14 (30)
T 2m0d_A 2 KPYQCDYCGRSFS 14 (30)
T ss_dssp CCEECTTTCCEES
T ss_pred cCccCCCCCcccC
Confidence 5688999988754
No 26
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=70.32 E-value=1.3 Score=28.69 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=9.7
Q ss_pred CCCCCCCCcce
Q 038108 20 PGSCPYCGGKV 30 (67)
Q Consensus 20 pG~Cp~CGG~v 30 (67)
+..||.||+.-
T Consensus 107 ~~~CP~Cgs~~ 117 (139)
T 3a43_A 107 FLACPKCGSHD 117 (139)
T ss_dssp GCSCSSSSCCC
T ss_pred CCcCccccCCc
Confidence 89999999984
No 27
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=70.25 E-value=1.7 Score=18.29 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=9.5
Q ss_pred ceEEeccccceee
Q 038108 52 KKYFCSLCSRRLE 64 (67)
Q Consensus 52 r~~~Ct~C~r~L~ 64 (67)
+.|.|..|++...
T Consensus 1 ~~~~C~~C~k~f~ 13 (29)
T 2m0f_A 1 GPLKCRECGKQFT 13 (29)
T ss_dssp CCEECTTTSCEES
T ss_pred CCccCCCCCCccC
Confidence 3578888888654
No 28
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=70.23 E-value=4.1 Score=22.95 Aligned_cols=27 Identities=22% Similarity=0.547 Sum_probs=19.8
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEec--cccceee
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCS--LCSRRLE 64 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct--~C~r~L~ 64 (67)
-+||.|.|++...+ ....|+ .|++.+-
T Consensus 11 L~CP~c~~~L~~~~-----------------~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 11 LACPACHAPLEERD-----------------AELICTGQDCGLAYP 39 (56)
T ss_dssp CCCSSSCSCEEEET-----------------TEEEECSSSCCCEEE
T ss_pred eeCCCCCCcceecC-----------------CEEEcCCcCCCcEEe
Confidence 37999999877543 556788 7887654
No 29
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.88 E-value=0.73 Score=26.67 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=26.2
Q ss_pred cCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceeee
Q 038108 18 QAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLEL 65 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~~ 65 (67)
+....|+.||-.|...++-.. +--.| +..=|.|+.|++.|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a-----~~~~~-H~~CF~C~~C~~~L~~ 54 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLA-----NQQVF-HISCFRCSYCNNKLSL 54 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEEC-----SSSEE-ETTTCBCTTTCCBCCT
T ss_pred CCCCcCccCCCccCCceeEEE-----CCCEE-CCCCCeeCCCCCCCCC
Confidence 345689999999875432111 11111 3455789999998863
No 30
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=72.67 E-value=0.94 Score=19.17 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=9.5
Q ss_pred ceEEeccccceee
Q 038108 52 KKYFCSLCSRRLE 64 (67)
Q Consensus 52 r~~~Ct~C~r~L~ 64 (67)
+.|.|..||+...
T Consensus 1 kp~~C~~C~k~f~ 13 (26)
T 2lvu_A 1 KPYVCERCGKRFV 13 (26)
Confidence 4678888887654
No 31
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=68.90 E-value=1.8 Score=18.36 Aligned_cols=13 Identities=38% Similarity=1.129 Sum_probs=9.8
Q ss_pred ceEEeccccceee
Q 038108 52 KKYFCSLCSRRLE 64 (67)
Q Consensus 52 r~~~Ct~C~r~L~ 64 (67)
+.|.|..|++...
T Consensus 2 k~~~C~~C~k~f~ 14 (28)
T 2kvf_A 2 RPYSCSVCGKRFS 14 (28)
T ss_dssp CSEECSSSCCEES
T ss_pred cCccCCCCCcccC
Confidence 4688999988754
No 32
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=68.41 E-value=1.9 Score=19.38 Aligned_cols=14 Identities=21% Similarity=0.835 Sum_probs=11.2
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 5 ~k~~~C~~C~k~f~ 18 (35)
T 1srk_A 5 KRPFVCRICLSAFT 18 (35)
T ss_dssp CSCEECSSSCCEES
T ss_pred CcCeeCCCCCcccC
Confidence 46799999998764
No 33
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=67.50 E-value=1 Score=24.23 Aligned_cols=41 Identities=17% Similarity=0.501 Sum_probs=25.5
Q ss_pred cCCCCCCCCCcceEEEEe--ceeeeEEEeeeEeeecceEEeccccceeee
Q 038108 18 QAPGSCPYCGGKVLAIDF--ESQCRFCFLPICYNIKKKYFCSLCSRRLEL 65 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dv--es~~rfCflP~~~k~kr~~~Ct~C~r~L~~ 65 (67)
+....|+.||.+|...|. +..-+. + +..=|.|+.|++.|..
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~-~------H~~CF~C~~C~~~L~~ 51 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGEL-Y------HEQCFVCAQCFQQFPE 51 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEE-E------ETTTSSCTTTCCCCGG
T ss_pred cCCccchhcCccccCCceEEEeCcCe-e------CcCCCcccCCCCCCCC
Confidence 456789999999885431 111111 1 2345679999988853
No 34
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=66.51 E-value=1.4 Score=24.70 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=23.4
Q ss_pred cCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceeee
Q 038108 18 QAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLEL 65 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~~ 65 (67)
.....|+.|+-.|...++-+. +--.| ++.=|.|+.|++.|..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a-----~~~~~-H~~CF~C~~C~~~L~~ 46 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQC-----DGRSF-HRCCFLCMVCRKNLDS 46 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEE-----TTEEE-ESSSEECSSSCCEECS
T ss_pred CCCCcCcCcCccccCceeEEe-----CCccc-ccccCccCCCCCCCCC
Confidence 446789999998863332111 11111 2345789999998863
No 35
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=65.70 E-value=2 Score=18.39 Aligned_cols=13 Identities=31% Similarity=0.697 Sum_probs=9.9
Q ss_pred ceEEeccccceee
Q 038108 52 KKYFCSLCSRRLE 64 (67)
Q Consensus 52 r~~~Ct~C~r~L~ 64 (67)
+.|.|..||+...
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvg_A 2 APYRCPLCRAGCP 14 (27)
T ss_dssp CTEEETTTTEEES
T ss_pred cCcCCCCCCcccC
Confidence 4688999988653
No 36
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.16 E-value=3.4 Score=19.06 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.2
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elm_A 7 GHLYYCSQCHYSSI 20 (37)
T ss_dssp SCEEECSSSSCEEE
T ss_pred CcCeECCCCCcccC
Confidence 46799999998764
No 37
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=64.87 E-value=2.2 Score=18.92 Aligned_cols=14 Identities=29% Similarity=0.916 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 5 ~k~~~C~~C~k~f~ 18 (35)
T 2elx_A 5 SSGYVCALCLKKFV 18 (35)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCcchhC
Confidence 46789999998754
No 38
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=64.32 E-value=5.4 Score=27.42 Aligned_cols=41 Identities=22% Similarity=0.526 Sum_probs=26.4
Q ss_pred EEcCCceeeeeeecCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEecccccee
Q 038108 5 YVCSEEERELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRL 63 (67)
Q Consensus 5 ~vcde~~kv~~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L 63 (67)
|=+|++++|.+.. -.||+||-++..+. +..|+.|-.|+-.+
T Consensus 101 y~Vd~~Gkv~~~~---~~Cp~Cg~g~fma~---------------h~dR~~CGkC~~t~ 141 (189)
T 2xzm_9 101 YKLENNGKVSLQQ---KGCPKCGPGIFMAK---------------HYDRHYCGKCHLTL 141 (189)
T ss_dssp EEEETTTEEEECS---EECSTTCSSCEEEE---------------CSSCEEETTTCCCB
T ss_pred EEECCCceEEEcc---ccCCccCCCccccC---------------ccCCCccCCceeEE
Confidence 4467777777654 47999997754433 33366787776544
No 39
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=63.31 E-value=5.7 Score=26.38 Aligned_cols=12 Identities=50% Similarity=1.248 Sum_probs=8.1
Q ss_pred cCCCCCCCCCcc
Q 038108 18 QAPGSCPYCGGK 29 (67)
Q Consensus 18 ~ApG~Cp~CGG~ 29 (67)
.+|..||-||.+
T Consensus 151 ~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 151 EAPEYCPVCGAP 162 (170)
T ss_dssp CCCSBCTTTCCB
T ss_pred CCCCCCCCCCCC
Confidence 466777777754
No 40
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.98 E-value=3 Score=18.80 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elq_A 7 GKPFKCSLCEYATR 20 (36)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCccCCCCCchhC
Confidence 46789999988764
No 41
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=60.33 E-value=1.5 Score=18.54 Aligned_cols=11 Identities=27% Similarity=1.147 Sum_probs=7.6
Q ss_pred eEEecccccee
Q 038108 53 KYFCSLCSRRL 63 (67)
Q Consensus 53 ~~~Ct~C~r~L 63 (67)
.|.|..|++..
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 1ard_A 2 SFVCEVCTRAF 12 (29)
T ss_dssp CCBCTTTCCBC
T ss_pred CeECCCCCccc
Confidence 46777887754
No 42
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=64.40 E-value=1.9 Score=18.36 Aligned_cols=13 Identities=38% Similarity=0.979 Sum_probs=9.1
Q ss_pred ceEEeccccceee
Q 038108 52 KKYFCSLCSRRLE 64 (67)
Q Consensus 52 r~~~Ct~C~r~L~ 64 (67)
+.|.|..|++...
T Consensus 2 k~~~C~~C~k~f~ 14 (30)
T 2lvr_A 2 KPYVCIHCQRQFA 14 (30)
Confidence 4578888887653
No 43
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=64.40 E-value=1.9 Score=18.46 Aligned_cols=13 Identities=23% Similarity=0.736 Sum_probs=9.2
Q ss_pred ceEEeccccceee
Q 038108 52 KKYFCSLCSRRLE 64 (67)
Q Consensus 52 r~~~Ct~C~r~L~ 64 (67)
+.|.|..|++...
T Consensus 1 k~~~C~~C~k~f~ 13 (29)
T 2lvt_A 1 KPCQCVMCGKAFT 13 (29)
Confidence 3578888887643
No 44
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=59.07 E-value=3.9 Score=24.87 Aligned_cols=36 Identities=19% Similarity=0.449 Sum_probs=24.0
Q ss_pred eeeeecCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEecccccee
Q 038108 13 ELGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRL 63 (67)
Q Consensus 13 v~~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L 63 (67)
+.-+|.+.-.||.||+. ..-|..+. ...|..|+...
T Consensus 20 ie~~q~~~y~Cp~CG~~-~v~r~atG--------------iW~C~~Cg~~~ 55 (83)
T 1vq8_Z 20 IESEMNEDHACPNCGED-RVDRQGTG--------------IWQCSYCDYKF 55 (83)
T ss_dssp HHHHHHSCEECSSSCCE-EEEEEETT--------------EEEETTTCCEE
T ss_pred HHHhccccCcCCCCCCc-ceeccCCC--------------eEECCCCCCEe
Confidence 33567788899999974 34455443 45688887653
No 45
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.35 E-value=3.7 Score=18.60 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=10.5
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elp_A 7 GRAMKCPYCDFYFM 20 (37)
T ss_dssp CCCEECSSSSCEEC
T ss_pred CCCeECCCCChhhc
Confidence 45788999988654
No 46
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.40 E-value=4.4 Score=18.22 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elv_A 7 GLLYDCHICERKFK 20 (36)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 46789999998654
No 47
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=56.52 E-value=6.5 Score=29.98 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=26.5
Q ss_pred CCCCCCCCCcceEEEEeceeeeEE--EeeeEeeec-ceEEecccccee
Q 038108 19 APGSCPYCGGKVLAIDFESQCRFC--FLPICYNIK-KKYFCSLCSRRL 63 (67)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfC--flP~~~k~k-r~~~Ct~C~r~L 63 (67)
.++.||.||..-. +|+. =||.+.+.- -.|.|..||-+-
T Consensus 11 ~~s~Cp~C~~~g~-------t~~~~~~IP~F~eVii~Sf~C~~CGyrn 51 (404)
T 2qkd_A 11 IESLCMNCYRNGT-------TRLLLTKIPFFREIIVSSFSCEHCGWNN 51 (404)
T ss_dssp CEEECTTTSSEEE-------EEEEEEEETTTEEEEEEEEECTTTCCEE
T ss_pred ccccCCCCCCCce-------EEEEEEcCCCCceEEEEEEECCCCCCch
Confidence 3567999996543 2333 378776665 789999999764
No 48
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=56.20 E-value=3.8 Score=18.94 Aligned_cols=14 Identities=36% Similarity=1.013 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 4 ~k~~~C~~C~k~f~ 17 (39)
T 1njq_A 4 PRSYTCSFCKREFR 17 (39)
T ss_dssp SSSEECTTTCCEES
T ss_pred CCceECCCCCcccC
Confidence 35789999998754
No 49
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=56.14 E-value=4.2 Score=18.87 Aligned_cols=14 Identities=21% Similarity=0.883 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 9 ~~~~~C~~C~k~f~ 22 (42)
T 2epc_A 9 ETPYLCGQCGKSFT 22 (42)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCcccC
Confidence 46789999988754
No 50
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.08 E-value=4.7 Score=17.94 Aligned_cols=14 Identities=36% Similarity=0.607 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elt_A 7 GKPYKCPQCSYASA 20 (36)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCCCCCCCCcccC
Confidence 46789999998754
No 51
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.58 E-value=2.2 Score=23.63 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=24.4
Q ss_pred cCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 18 QAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
..+..|+.|+-.|...+.-.. +--.| ++.=|.|+.|++.|.
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a-----~~~~~-H~~CF~C~~C~~~L~ 47 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSS-----LGKDW-HKFCLKCERCSKTLT 47 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEE-----TTEEE-ETTTCBCSSSCCBCC
T ss_pred CCCCCCcCCCCEeECCeEEEE-----CCeEe-eCCCCCCCCCCCccC
Confidence 456789999998874332111 11111 234577888988875
No 52
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=55.16 E-value=2.2 Score=17.79 Aligned_cols=11 Identities=18% Similarity=0.760 Sum_probs=7.5
Q ss_pred eEEecccccee
Q 038108 53 KYFCSLCSRRL 63 (67)
Q Consensus 53 ~~~Ct~C~r~L 63 (67)
.|.|..|++..
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 2m0e_A 2 EHKCPHCDKKF 12 (29)
T ss_dssp CCCCSSCCCCC
T ss_pred CCcCCCCCccc
Confidence 46677777654
No 53
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=54.98 E-value=4 Score=27.49 Aligned_cols=34 Identities=21% Similarity=0.460 Sum_probs=20.0
Q ss_pred eeecCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccce
Q 038108 15 GRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRR 62 (67)
Q Consensus 15 ~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~ 62 (67)
+.-.-.+.||.|||. | ..+| +-+ --+.|-.||..
T Consensus 9 ~~~~~~~~CP~Cg~~----d---~~~~-----~~d--g~~~C~~Cg~~ 42 (255)
T 1nui_A 9 SVFLYHIPCDNCGSS----D---GNSL-----FSD--GHTFCYVCEKW 42 (255)
T ss_dssp -CEEEEECCSSSCCS----S---CEEE-----ETT--SCEEETTTCCE
T ss_pred cceecCCcCCCCCCC----C---CceE-----eCC--CCeecccCCCc
Confidence 444447899999996 2 1221 112 23888889854
No 54
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.71 E-value=5.3 Score=17.92 Aligned_cols=15 Identities=20% Similarity=0.647 Sum_probs=11.0
Q ss_pred ecceEEeccccceee
Q 038108 50 IKKKYFCSLCSRRLE 64 (67)
Q Consensus 50 ~kr~~~Ct~C~r~L~ 64 (67)
..+.|.|..|++...
T Consensus 6 ~~k~~~C~~C~k~f~ 20 (36)
T 2els_A 6 SGKIFTCEYCNKVFK 20 (36)
T ss_dssp CCCCEECTTTCCEES
T ss_pred CCCCEECCCCCceeC
Confidence 346788999988653
No 55
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=54.67 E-value=1.6 Score=26.21 Aligned_cols=25 Identities=36% Similarity=0.875 Sum_probs=16.6
Q ss_pred CCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccc
Q 038108 22 SCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSR 61 (67)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r 61 (67)
.|.||||.+.. ..+|-...|..|.+
T Consensus 35 ~CaRCGg~v~l---------------r~~k~~WvC~lC~k 59 (62)
T 2a20_A 35 FCARCGGRVSL---------------RSNKVMWVCNLCRK 59 (62)
T ss_dssp ECTTSEEEEES---------------STTCEEEEEHHHHH
T ss_pred eecccCCEeee---------------cCCeEEEEehhhhh
Confidence 48888887654 34566666766654
No 56
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.24 E-value=0.63 Score=26.11 Aligned_cols=40 Identities=15% Similarity=0.478 Sum_probs=28.0
Q ss_pred ecCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEecccccee
Q 038108 17 QQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRL 63 (67)
Q Consensus 17 ~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L 63 (67)
..-|-.|++||-.+...|++....-| -.+.|.|..|++..
T Consensus 14 ~~r~~~C~~C~~~~~~~~L~~H~~~c-------~~~~~~C~~C~~~~ 53 (75)
T 2d9k_A 14 PLRLAVCQHCDLELSILKLKEHEDYC-------GARTELCGNCGRNV 53 (75)
T ss_dssp CCCCEECSSSCCEECHHHHHHHHHHH-------HHCEEECSSSCCEE
T ss_pred CCcccCCcccChHhhHHHHHHHHhHc-------CCCceEcccCCCcC
Confidence 34567899999888777776554333 35678888888864
No 57
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=54.07 E-value=4.5 Score=18.81 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (42)
T 2el5_A 8 ENPYECSECGKAFN 21 (42)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCccCCCcChhhC
Confidence 46789999988754
No 58
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.69 E-value=4.8 Score=19.01 Aligned_cols=14 Identities=36% Similarity=0.902 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2emb_A 10 RKRYECSKCQATFN 23 (44)
T ss_dssp CSSEECTTTCCEES
T ss_pred CCCeECCCCCCccC
Confidence 46789999988764
No 59
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=53.56 E-value=2.2 Score=17.95 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=8.0
Q ss_pred eEEeccccceee
Q 038108 53 KYFCSLCSRRLE 64 (67)
Q Consensus 53 ~~~Ct~C~r~L~ 64 (67)
.|.|+.|++...
T Consensus 2 ~~~C~~C~k~f~ 13 (30)
T 1klr_A 2 TYQCQYCEFRSA 13 (30)
T ss_dssp CCCCSSSSCCCS
T ss_pred CccCCCCCCccC
Confidence 467788877643
No 60
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=53.36 E-value=11 Score=24.98 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=7.5
Q ss_pred cCCCCCCCCCcc
Q 038108 18 QAPGSCPYCGGK 29 (67)
Q Consensus 18 ~ApG~Cp~CGG~ 29 (67)
.+|..||-||.+
T Consensus 169 ~~p~~CP~C~~~ 180 (191)
T 1lko_A 169 GAPELCPACAHP 180 (191)
T ss_dssp ECCSBCTTTCCB
T ss_pred CCCCCCCCCcCC
Confidence 455667766665
No 61
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.36 E-value=5.4 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=18.7
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccce
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRR 62 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~ 62 (67)
--||.||..+..-.-+. ..+-+|.|..|+-.
T Consensus 5 ~FCp~Cgn~L~~~~~~~-----------~~~~~~~C~~C~y~ 35 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKV-----------DRVLRLACRNCDYS 35 (113)
T ss_dssp CCCSSSCCCCEECCCTT-----------TCCCCEECSSSCCE
T ss_pred eeCcCCCCEeeEcccCC-----------CCeeEEECCCCCCe
Confidence 35888888876543321 12346777777653
No 62
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.95 E-value=4.6 Score=19.04 Aligned_cols=14 Identities=29% Similarity=0.747 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2yu5_A 10 ENPFKCSKCDRVFT 23 (44)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCeECCCCCchhC
Confidence 46789999998764
No 63
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.24 E-value=5 Score=19.08 Aligned_cols=14 Identities=29% Similarity=0.728 Sum_probs=11.0
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (44)
T 2epv_A 10 EKPYECNECGKAFI 23 (44)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCcccC
Confidence 46789999998754
No 64
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.84 E-value=6.8 Score=21.38 Aligned_cols=47 Identities=15% Similarity=0.355 Sum_probs=27.1
Q ss_pred eeeecCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceeee
Q 038108 14 LGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLEL 65 (67)
Q Consensus 14 ~~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~~ 65 (67)
+........|+.||.++...+.-... .--.| ++.=|.|+.|++.|..
T Consensus 5 ~~~~~~~~~C~~C~~~I~~~~~~~~a----~~~~~-H~~CF~C~~C~~~L~~ 51 (77)
T 1g47_A 5 MANALASATCERCKGGFAPAEKIVNS----NGELY-HEQCFVCAQCFQQFPE 51 (77)
T ss_dssp CCSCCCCCBCSSSCCBCCSTTTCEEE----TTEEE-CTTTCCCTTTCCCCGG
T ss_pred hccCCCCCCchhcCCccCCCceEEEe----CccEe-ccccCeECCCCCCCCC
Confidence 34456678999999998643211000 00011 3445778899888753
No 65
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.58 E-value=5.4 Score=18.63 Aligned_cols=14 Identities=29% Similarity=0.809 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2eof_A 10 EKPYECNECQKAFN 23 (44)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 46789999988754
No 66
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.08 E-value=5.5 Score=18.86 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eow_A 10 EKPYKCNECGKAFR 23 (46)
T ss_dssp CCCEECTTSCCEES
T ss_pred CCCeeccccCChhc
Confidence 46789999988754
No 67
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=51.06 E-value=6 Score=19.58 Aligned_cols=14 Identities=36% Similarity=1.044 Sum_probs=11.0
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 5 ~kp~~C~~C~k~F~ 18 (48)
T 3iuf_A 5 DKPYACDICGKRYK 18 (48)
T ss_dssp TSCEECTTTCCEES
T ss_pred CcCEECCCcCcccC
Confidence 46799999998754
No 68
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.88 E-value=5.4 Score=18.90 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytf_A 10 EKPFECSECQKAFN 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCcCCCCCCcccC
Confidence 46789999998754
No 69
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.84 E-value=5.7 Score=18.89 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em7_A 10 EKPYKCEECGKGFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCccCCCccchhC
Confidence 46789999998754
No 70
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.58 E-value=4 Score=18.39 Aligned_cols=14 Identities=21% Similarity=0.876 Sum_probs=10.5
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elo_A 7 GRSYSCPVCEKSFS 20 (37)
T ss_dssp CCCCEETTTTEECS
T ss_pred CCCcCCCCCCCccC
Confidence 46788999988653
No 71
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.52 E-value=5.8 Score=18.87 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2emi_A 10 ERHYECSECGKAFI 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCCCCCCCCcccC
Confidence 46789999988754
No 72
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.36 E-value=5.6 Score=18.85 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yts_A 10 EKPYICNECGKSFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCEECCCCChhhC
Confidence 56789999998754
No 73
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.32 E-value=5.4 Score=18.53 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=10.6
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2en2_A 9 EKPYKCETCGARFV 22 (42)
T ss_dssp SCSEECTTTCCEES
T ss_pred CCCEeCCCcChhhC
Confidence 46788999988754
No 74
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.15 E-value=5.5 Score=18.96 Aligned_cols=14 Identities=21% Similarity=0.653 Sum_probs=11.0
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2enc_A 10 EKPFKCEECGKGFY 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCcCCCCCCCcCC
Confidence 46799999998754
No 75
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.98 E-value=5.7 Score=18.97 Aligned_cols=14 Identities=29% Similarity=0.883 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eoz_A 10 EKPYSCNVCGKAFV 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeECcccChhhC
Confidence 46799999998754
No 76
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.95 E-value=5.6 Score=18.83 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eor_A 10 EKPYNCEECGKAFI 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CcCccCCCCCCCcC
Confidence 46789999988754
No 77
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.76 E-value=5.8 Score=18.79 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2epw_A 10 EKPCKCTECGKAFC 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCCCCccC
Confidence 46789999998754
No 78
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.73 E-value=2.8 Score=18.76 Aligned_cols=14 Identities=21% Similarity=0.887 Sum_probs=9.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 7 ~~~~~C~~C~k~f~ 20 (36)
T 2elr_A 7 GKTHLCDMCGKKFK 20 (36)
T ss_dssp CSSCBCTTTCCBCS
T ss_pred CCCeecCcCCCCcC
Confidence 45678888887653
No 79
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.66 E-value=6 Score=18.81 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eq0_A 10 EKPYKCHECGKVFR 23 (46)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCeECCCCCchhC
Confidence 46789999988754
No 80
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.63 E-value=6 Score=18.87 Aligned_cols=14 Identities=29% Similarity=0.840 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2ytp_A 10 ERHYECSECGKAFA 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCcCCcccC
Confidence 46789999988754
No 81
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=49.42 E-value=2.5 Score=18.01 Aligned_cols=11 Identities=45% Similarity=1.195 Sum_probs=7.3
Q ss_pred eEEecccccee
Q 038108 53 KYFCSLCSRRL 63 (67)
Q Consensus 53 ~~~Ct~C~r~L 63 (67)
.|.|+.|++..
T Consensus 2 ~~~C~~C~k~f 12 (30)
T 1paa_A 2 AYACGLCNRAF 12 (30)
T ss_dssp CSBCTTTCCBC
T ss_pred CcCCcccCccc
Confidence 46677777654
No 82
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.42 E-value=5.9 Score=18.84 Aligned_cols=14 Identities=36% Similarity=0.937 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eml_A 10 EKPYECSVCGKAFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCcCCccC
Confidence 46789999998754
No 83
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=49.30 E-value=2.7 Score=23.27 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=7.4
Q ss_pred eEEeccccceee
Q 038108 53 KYFCSLCSRRLE 64 (67)
Q Consensus 53 ~~~Ct~C~r~L~ 64 (67)
=|.|+.|++.|.
T Consensus 27 CF~C~~C~~~L~ 38 (76)
T 1iml_A 27 CLKCEKCGKTLT 38 (76)
T ss_dssp TCBCTTTCCBCC
T ss_pred CCCccccCccCC
Confidence 355666766664
No 84
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=49.22 E-value=5.2 Score=23.98 Aligned_cols=12 Identities=42% Similarity=1.190 Sum_probs=10.0
Q ss_pred CCCCCCCCcceE
Q 038108 20 PGSCPYCGGKVL 31 (67)
Q Consensus 20 pG~Cp~CGG~v~ 31 (67)
.|.||-||..+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 678999998765
No 85
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.22 E-value=6 Score=18.88 Aligned_cols=14 Identities=21% Similarity=0.717 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eoy_A 10 EKCFKCNKCEKTFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCEECcCCCCcCC
Confidence 46789999988754
No 86
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.08 E-value=6 Score=18.87 Aligned_cols=14 Identities=21% Similarity=0.752 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eoo_A 10 ERPYGCNECGKNFG 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCEEccccCcccC
Confidence 46789999988754
No 87
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.05 E-value=6.3 Score=18.81 Aligned_cols=14 Identities=36% Similarity=0.807 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yto_A 10 EKPYKCSDCGKAFT 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCEECcccCCccC
Confidence 56799999998754
No 88
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.01 E-value=5.8 Score=18.85 Aligned_cols=14 Identities=29% Similarity=0.911 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytj_A 10 EKPYICAECGKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCChhhC
Confidence 46789999988754
No 89
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.92 E-value=6 Score=18.88 Aligned_cols=14 Identities=21% Similarity=0.752 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em4_A 10 QRPYECIECGKAFK 23 (46)
T ss_dssp SSSEECSSSCCEES
T ss_pred CcCcCCCCCCCccC
Confidence 46789999988754
No 90
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.74 E-value=6.1 Score=18.76 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=11.5
Q ss_pred ecceEEeccccceee
Q 038108 50 IKKKYFCSLCSRRLE 64 (67)
Q Consensus 50 ~kr~~~Ct~C~r~L~ 64 (67)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~F~ 23 (45)
T 2epu_A 9 GQKPFECTHCGKSFR 23 (45)
T ss_dssp SCCSEEETTTTEEES
T ss_pred CCcCccCCCCCCccC
Confidence 356799999998754
No 91
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.55 E-value=6 Score=18.73 Aligned_cols=14 Identities=29% Similarity=0.925 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eme_A 10 EKPYVCDYCGKAFG 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCChhhC
Confidence 46788999988754
No 92
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.54 E-value=6.1 Score=18.76 Aligned_cols=14 Identities=29% Similarity=0.783 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ene_A 10 EKPYKCNECGKVFR 23 (46)
T ss_dssp SSSEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 56789999998754
No 93
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.25 E-value=6.6 Score=18.64 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=11.0
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ysp_A 10 EKPYKCEKCGKGYN 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeECCCCCCccC
Confidence 46799999998754
No 94
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.25 E-value=6.3 Score=18.80 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em8_A 10 EKPYKCVECGKGYK 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECcccCchhC
Confidence 46789999988754
No 95
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.19 E-value=6.4 Score=18.51 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (44)
T 2eox_A 10 SKSYNCNECGKAFT 23 (44)
T ss_dssp CCCEEETTTTEEES
T ss_pred CCCeECcccCcccC
Confidence 46789999998754
No 96
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.10 E-value=6.3 Score=18.71 Aligned_cols=14 Identities=29% Similarity=0.812 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep3_A 10 EKPYRCAECGKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 46789999988754
No 97
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.07 E-value=6.1 Score=18.78 Aligned_cols=14 Identities=21% Similarity=1.018 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emh_A 10 ERPYICTVCGKAFT 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCcCCCCCCchhC
Confidence 46789999988754
No 98
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.04 E-value=6.7 Score=18.45 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (44)
T 2emx_A 8 EKPFGCSCCEKAFS 21 (44)
T ss_dssp CCCEECSSSSCEES
T ss_pred CcCccCCCCCcccC
Confidence 46789999988754
No 99
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.99 E-value=6.3 Score=18.72 Aligned_cols=14 Identities=21% Similarity=0.714 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ytg_A 10 EKPFKCGECGKSYN 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 56789999988754
No 100
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=47.98 E-value=6.2 Score=18.83 Aligned_cols=14 Identities=21% Similarity=0.748 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emj_A 10 EKPFECAECGKSFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCEECCCCCcccC
Confidence 46789999998754
No 101
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.92 E-value=6.5 Score=18.68 Aligned_cols=14 Identities=21% Similarity=0.714 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emy_A 10 ENPYECHECGKAFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CcCcCCCCCCcccC
Confidence 46789999988754
No 102
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=47.87 E-value=18 Score=22.13 Aligned_cols=37 Identities=14% Similarity=0.483 Sum_probs=25.1
Q ss_pred CCCCCCCCCcc-eEEEEeceeeeEEEeeeEeeecceEEeccccceeee
Q 038108 19 APGSCPYCGGK-VLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLEL 65 (67)
Q Consensus 19 ApG~Cp~CGG~-v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~~ 65 (67)
.-=.||.||.. .+.+.++-.. ..-...|..|+.....
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~----------~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRAR----------NTGVISCTVCLEEFQT 59 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTT----------TEEEEEESSSCCEEEE
T ss_pred CeEcCCCCCCCCeEEEEEEccC----------CEEEEEcccCCCeEEe
Confidence 45679999998 6666654321 2356789999977643
No 103
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.62 E-value=6.8 Score=18.58 Aligned_cols=14 Identities=29% Similarity=0.859 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emp_A 10 VKPYMCNECGKAFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCchhC
Confidence 46789999988754
No 104
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.52 E-value=6.6 Score=18.73 Aligned_cols=14 Identities=21% Similarity=0.733 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em2_A 10 EKPFKCKECGKAFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCEECCcCCchhC
Confidence 46789999998754
No 105
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.46 E-value=6.9 Score=18.50 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2yrj_A 10 EKPYRCGECGKAFA 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 56789999988754
No 106
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.36 E-value=6.8 Score=18.14 Aligned_cols=14 Identities=21% Similarity=0.764 Sum_probs=10.5
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (41)
T 2ept_A 8 QRVYECQECGKSFR 21 (41)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCCcC
Confidence 46788999988654
No 107
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=47.36 E-value=6.6 Score=18.56 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2el4_A 10 VKPYGCSQCAKTFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCceECCCCCchhC
Confidence 46789999988754
No 108
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.34 E-value=6.6 Score=18.56 Aligned_cols=14 Identities=14% Similarity=0.503 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emm_A 10 ERPHKCNECGKSFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCCChhhC
Confidence 46789999988754
No 109
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=47.33 E-value=13 Score=21.83 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=5.7
Q ss_pred CCCCCCCCCcc
Q 038108 19 APGSCPYCGGK 29 (67)
Q Consensus 19 ApG~Cp~CGG~ 29 (67)
.--.|+.||-.
T Consensus 27 v~Y~C~~CG~~ 37 (70)
T 1twf_L 27 LKYICAECSSK 37 (70)
T ss_dssp CCEECSSSCCE
T ss_pred EEEECCCCCCc
Confidence 33456666554
No 110
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.28 E-value=6.4 Score=18.76 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2em5_A 10 TKSHQCHECGRGFT 23 (46)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCeECCcCCCccC
Confidence 46789999998754
No 111
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.05 E-value=6.7 Score=18.61 Aligned_cols=14 Identities=36% Similarity=0.963 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep2_A 10 EKPYECSICGKSFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCcCCCCCCcccC
Confidence 46789999988754
No 112
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=46.87 E-value=6.6 Score=18.73 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2el6_A 10 VNPYKCSQCEKSFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCeECCCCCcccC
Confidence 46789999998754
No 113
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.83 E-value=6.8 Score=18.59 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2en3_A 10 EKPFQCKECGMNFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCcccChhhC
Confidence 46789999998754
No 114
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=46.74 E-value=7.1 Score=18.51 Aligned_cols=14 Identities=29% Similarity=0.857 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ema_A 10 EKRYKCNECGKVFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CcCcCCCCCcchhC
Confidence 46789999988754
No 115
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.34 E-value=7.6 Score=18.48 Aligned_cols=14 Identities=21% Similarity=0.714 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emf_A 10 GKHFECTECGKAFT 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 46788999988754
No 116
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=46.31 E-value=6.8 Score=18.51 Aligned_cols=14 Identities=29% Similarity=0.812 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em9_A 10 EKPYNCKECGKSFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCccccccC
Confidence 46789999988754
No 117
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.17 E-value=7.4 Score=18.46 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=11.3
Q ss_pred ecceEEeccccceee
Q 038108 50 IKKKYFCSLCSRRLE 64 (67)
Q Consensus 50 ~kr~~~Ct~C~r~L~ 64 (67)
..+.|.|..|++...
T Consensus 9 ~~~~~~C~~C~k~f~ 23 (46)
T 2en6_A 9 GEKPYGCNECGKTFS 23 (46)
T ss_dssp SSCCEEETTTTEEES
T ss_pred CCcCeECCCCCcccC
Confidence 356789999998754
No 118
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.14 E-value=7.1 Score=18.53 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yu8_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CSSEECSSSCCEES
T ss_pred CCCeECCcCCchhC
Confidence 56789999988754
No 119
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.79 E-value=7.2 Score=18.49 Aligned_cols=14 Identities=36% Similarity=0.923 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2em3_A 10 EKPYECKVCSKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCcccC
Confidence 46789999988754
No 120
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=45.63 E-value=7.9 Score=21.93 Aligned_cols=9 Identities=44% Similarity=1.114 Sum_probs=7.5
Q ss_pred CCCCCCcce
Q 038108 22 SCPYCGGKV 30 (67)
Q Consensus 22 ~Cp~CGG~v 30 (67)
.||-||.+-
T Consensus 38 ~CP~Cg~~K 46 (54)
T 4rxn_A 38 VCPLCGVGK 46 (54)
T ss_dssp BCTTTCCBG
T ss_pred cCcCCCCcH
Confidence 899999763
No 121
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.55 E-value=7.3 Score=18.47 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2yso_A 10 EKSHQCRECGEIFF 23 (46)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCEEccccChhhC
Confidence 46788999988754
No 122
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=45.51 E-value=12 Score=18.97 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=6.4
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 8 ~k~~~C~~C~k~f 20 (66)
T 2drp_A 8 EHTYRCKVCSRVY 20 (66)
T ss_dssp TTEEECTTTCCEE
T ss_pred CcceECCCCcchh
Confidence 3445555555443
No 123
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=45.26 E-value=13 Score=23.36 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=9.1
Q ss_pred CCCCCCcceEEE
Q 038108 22 SCPYCGGKVLAI 33 (67)
Q Consensus 22 ~Cp~CGG~v~a~ 33 (67)
-||.||..+...
T Consensus 5 ~C~~CG~~~~~~ 16 (189)
T 3cng_A 5 FCSQCGGEVILR 16 (189)
T ss_dssp BCTTTCCBCEEE
T ss_pred cCchhCCccccc
Confidence 588888887754
No 124
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=45.23 E-value=6.5 Score=22.43 Aligned_cols=12 Identities=67% Similarity=1.777 Sum_probs=8.8
Q ss_pred CC-CCCCCCcceE
Q 038108 20 PG-SCPYCGGKVL 31 (67)
Q Consensus 20 pG-~Cp~CGG~v~ 31 (67)
|| -|||||=.|.
T Consensus 22 P~IrCpyCGyrii 34 (48)
T 4ayb_P 22 PGVRCPYCGYKII 34 (48)
T ss_dssp SSSCCTTTCCSCE
T ss_pred CCcccCccCcEEE
Confidence 44 5999997664
No 125
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.21 E-value=7.5 Score=18.43 Aligned_cols=14 Identities=36% Similarity=0.847 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytd_A 10 EKPYKCSECGKAFH 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCCeeC
Confidence 46789999988754
No 126
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=45.11 E-value=7.5 Score=18.84 Aligned_cols=15 Identities=20% Similarity=0.722 Sum_probs=11.0
Q ss_pred ecceEEeccccceee
Q 038108 50 IKKKYFCSLCSRRLE 64 (67)
Q Consensus 50 ~kr~~~Ct~C~r~L~ 64 (67)
..+.|.|..|++.+.
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (48)
T 2epr_A 9 TRKQVACEICGKIFR 23 (48)
T ss_dssp CCCSEEETTTTEEES
T ss_pred CCcCeeCCCCCcccC
Confidence 456788888887654
No 127
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=45.00 E-value=8.8 Score=22.51 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=7.7
Q ss_pred ecCCCCCCCCCcce
Q 038108 17 QQAPGSCPYCGGKV 30 (67)
Q Consensus 17 ~~ApG~Cp~CGG~v 30 (67)
++..-.|..||..+
T Consensus 18 ~~v~Y~C~~Cg~~~ 31 (63)
T 3h0g_L 18 ATMIYLCADCGARN 31 (63)
T ss_dssp -CCCCBCSSSCCBC
T ss_pred CCeEEECCCCCCee
Confidence 34555666666554
No 128
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.99 E-value=7.5 Score=18.36 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2en8_A 10 EKSHTCDECGKNFC 23 (46)
T ss_dssp CSSEECTTTCCEES
T ss_pred CCCeECCCcCcccC
Confidence 56789999988754
No 129
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=44.89 E-value=4 Score=18.46 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=8.4
Q ss_pred ceEEecccccee
Q 038108 52 KKYFCSLCSRRL 63 (67)
Q Consensus 52 r~~~Ct~C~r~L 63 (67)
+.|.|..|++..
T Consensus 1 kp~~C~~C~k~F 12 (33)
T 1rim_A 1 YKFACPECPKRF 12 (33)
T ss_dssp CCCCCSSSCCCC
T ss_pred CcccCCCCCchh
Confidence 357788888764
No 130
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=44.88 E-value=3.7 Score=18.51 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=8.4
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 9 ~k~~~C~~C~k~f 21 (37)
T 1p7a_A 9 IKPFQCPDCDRSF 21 (37)
T ss_dssp SSSBCCTTTCCCB
T ss_pred CCCccCCCCCccc
Confidence 3567777777654
No 131
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.35 E-value=4.7 Score=18.93 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=10.3
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2eoj_A 10 ENPYECCECGKVFS 23 (44)
T ss_dssp CCSCEETTTTEECS
T ss_pred CcCeeCCCCCCccC
Confidence 45688888887653
No 132
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.23 E-value=7.7 Score=18.39 Aligned_cols=14 Identities=29% Similarity=0.850 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2en1_A 10 EKPFKCEECGKRFT 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeeCCCCCcccC
Confidence 46799999998754
No 133
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.75 E-value=3.8 Score=23.13 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=25.9
Q ss_pred eeeecCCCCCCCCCcceEEEEeceeeeEEEeeeEeee--cceEEeccccceee
Q 038108 14 LGRQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNI--KKKYFCSLCSRRLE 64 (67)
Q Consensus 14 ~~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~--kr~~~Ct~C~r~L~ 64 (67)
.........|+.||..|...-|+ .--+. ..=|.|+.|++.|.
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~~v~---------a~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 2cor_A 9 KARGLGKYICQKCHAIIDEQPLI---------FKNDPYHPDHFNCANCGKELT 52 (79)
T ss_dssp CCCCCCCCBCTTTCCBCCSCCCC---------CSSSCCCTTTSBCSSSCCBCC
T ss_pred hhhccCCCCCccCCCEecceEEE---------ECcceeCCCCCEeCCCCCccC
Confidence 34455567899999998821111 11222 23478999988875
No 134
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.71 E-value=3.5 Score=22.33 Aligned_cols=39 Identities=10% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCCCCCCCcceEEEE-eceeeeEEEeeeEeeecceEEeccccceee
Q 038108 20 PGSCPYCGGKVLAID-FESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a~D-ves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
...|+.||..|...| +-+. +--.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a-----~~~~~-H~~CF~C~~C~~~L~ 44 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY-----KGSSW-HETCFICHRCQQPIG 44 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE-----TTEEE-ETTTTCCSSSCCCCC
T ss_pred CCCCccCCCcccCCceEEEE-----CcCee-cccCCcccccCCccC
Confidence 358999999887543 1111 11111 244567888888775
No 135
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.68 E-value=8.2 Score=18.29 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ytk_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCEeCCcCCCccC
Confidence 46788999988754
No 136
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=43.60 E-value=8.8 Score=15.84 Aligned_cols=13 Identities=31% Similarity=0.830 Sum_probs=9.5
Q ss_pred ceEEec--cccceee
Q 038108 52 KKYFCS--LCSRRLE 64 (67)
Q Consensus 52 r~~~Ct--~C~r~L~ 64 (67)
+.|.|+ .|++...
T Consensus 1 k~~~C~~~~C~k~f~ 15 (29)
T 2ab3_A 1 MVYVCHFENCGRSFN 15 (29)
T ss_dssp CCEEECSTTTCEEES
T ss_pred CCCCCcCCcCcCccC
Confidence 357888 8988654
No 137
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=43.50 E-value=3 Score=25.16 Aligned_cols=38 Identities=16% Similarity=0.413 Sum_probs=22.8
Q ss_pred CCCCCCCcceEEEE-eceeeeEEEeeeEeeecceEEeccccceee
Q 038108 21 GSCPYCGGKVLAID-FESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 21 G~Cp~CGG~v~a~D-ves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
+.|..|+.+|...| +-+...--| +..=|.|+.|++.|.
T Consensus 67 ~~C~~C~~~I~~~e~~~~a~~~~~------H~~CF~C~~C~~~L~ 105 (131)
T 2xjy_A 67 GLCASCDKRIRAYEMTMRVKDKVY------HLECFKCAACQKHFC 105 (131)
T ss_dssp EECTTTCCEECTTSEEEEETTEEE------EGGGCBCTTTCCBCC
T ss_pred cChhhcCCccCccceeEeeCCceE------CccCcccCCCCCCCC
Confidence 48999999996533 111111111 234578999998883
No 138
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=43.49 E-value=2.6 Score=22.88 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=21.0
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEe-eecceEEeccccceee
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICY-NIKKKYFCSLCSRRLE 64 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~-k~kr~~~Ct~C~r~L~ 64 (67)
..|+.||.+|...|-. .+ .+--.| .+..=|.|+.|++.|.
T Consensus 3 ~~C~~C~~~I~~~~~~--v~--a~~~~wH~~~~CF~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQR--VT--YNNFSWHASTECFLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCE--EE--ETTEEEETTTTTSBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceE--EE--ECCCccCCCCCCEECCCCCCcCC
Confidence 4689999888743210 00 011111 1134477888888774
No 139
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=43.23 E-value=2.8 Score=22.51 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=22.4
Q ss_pred CCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceeee
Q 038108 20 PGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLEL 65 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~~ 65 (67)
...|+.||.+|. .++-.. +--.| +..=|.|+.|++.|..
T Consensus 5 ~~~C~~C~~~I~-~~~~~a-----~~~~~-H~~CF~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVNA-----MGKQW-HVEHFVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEECC-----TTSBE-ETTTCBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEEEE-----Ccccc-ccCcCEECCCCCCCCC
Confidence 567999998887 211110 11111 2344778899888753
No 140
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=43.11 E-value=7.3 Score=21.31 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=23.3
Q ss_pred CCCCCCCCcceEE----EEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 20 PGSCPYCGGKVLA----IDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a----~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
...|+.||-+|.. ..+-+ .+--.| +..=|.|+.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~-----a~~~~~-H~~CF~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA-----YEGQSW-HDYCFHCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE-----ETTEEE-ETTTCBCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEE-----ECccee-CcccCEehhcCCCCC
Confidence 4689999998873 11111 111122 335578999998885
No 141
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=42.75 E-value=16 Score=25.44 Aligned_cols=15 Identities=27% Similarity=0.727 Sum_probs=11.2
Q ss_pred CCCCCCCCCcceEEE
Q 038108 19 APGSCPYCGGKVLAI 33 (67)
Q Consensus 19 ApG~Cp~CGG~v~a~ 33 (67)
...-||.||.+....
T Consensus 106 ~~~fC~~CG~~~~~~ 120 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPS 120 (269)
T ss_dssp TTSBCTTTCCBEEEC
T ss_pred cCCccccCCCcCccC
Confidence 346799999988653
No 142
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=42.28 E-value=4.5 Score=16.72 Aligned_cols=11 Identities=45% Similarity=1.111 Sum_probs=7.1
Q ss_pred EEeccccceee
Q 038108 54 YFCSLCSRRLE 64 (67)
Q Consensus 54 ~~Ct~C~r~L~ 64 (67)
|.|..|++...
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 56777776543
No 143
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=41.93 E-value=19 Score=24.05 Aligned_cols=38 Identities=24% Similarity=0.561 Sum_probs=24.3
Q ss_pred eecCCCCCCCCCcceEEEEeceeeeEEEe-eeEeeecceEEecccc
Q 038108 16 RQQAPGSCPYCGGKVLAIDFESQCRFCFL-PICYNIKKKYFCSLCS 60 (67)
Q Consensus 16 ~~~ApG~Cp~CGG~v~a~Dves~~rfCfl-P~~~k~kr~~~Ct~C~ 60 (67)
.|++...||+||... ...||-+ =|+-..|.-|-|..||
T Consensus 67 ~q~~~~~C~~Cg~~f-------~~Y~C~~C~l~d~~k~~yHC~~Cg 105 (143)
T 2dkt_A 67 LQHAQQTCEDCSTLF-------GEYYCSICHLFDKDKRQYHCESCG 105 (143)
T ss_dssp EECSCSBCSSSCCBS-------CSEECSSSCCEECSSSEEEETTTT
T ss_pred cccccCcCCCCCccc-------eeeEeceeecccCCCceecCCCCC
Confidence 366778999998543 4556643 2223557777777776
No 144
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=41.90 E-value=2.9 Score=23.40 Aligned_cols=21 Identities=43% Similarity=0.961 Sum_probs=13.3
Q ss_pred CCCCCCcceEEEEeceeeeEE
Q 038108 22 SCPYCGGKVLAIDFESQCRFC 42 (67)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfC 42 (67)
.|++||..+...-....-|||
T Consensus 20 ~C~~CG~~i~~~~~~r~krFC 40 (49)
T 2l8e_A 20 KCEYCGKYAPAEQFRGSKRFC 40 (49)
T ss_dssp ECTTTCCEEEGGGCTTTSSSC
T ss_pred cChhccCccccccCCCCCccC
Confidence 599999987654333334444
No 145
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=41.84 E-value=4 Score=20.16 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=11.8
Q ss_pred CCCCCCCCcceEEEE
Q 038108 20 PGSCPYCGGKVLAID 34 (67)
Q Consensus 20 pG~Cp~CGG~v~a~D 34 (67)
+..||.||-.|.+++
T Consensus 3 ~~~C~~C~k~Vy~~E 17 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE 17 (31)
T ss_dssp CCBCSSSCSBCCGGG
T ss_pred CCcCCccCCEEecce
Confidence 468999999887663
No 146
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.58 E-value=2.4 Score=24.19 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=23.8
Q ss_pred cCCCCCCCCCcceEEEEeceeeeEEEeeeEeee--cceEEeccccceeee
Q 038108 18 QAPGSCPYCGGKVLAIDFESQCRFCFLPICYNI--KKKYFCSLCSRRLEL 65 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~--kr~~~Ct~C~r~L~~ 65 (67)
.....|+.||-.|...++-.. --+. +.=|.|+.|++.|..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a--------~~~~wH~~CF~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV--------NGHFFHRSCFRCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB--------TTBCCBTTTCBCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEEEE--------CCCeeCCCcCEEcCCCCCcCC
Confidence 345679999998864332111 1122 344778888887753
No 147
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.54 E-value=5.5 Score=22.08 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=23.8
Q ss_pred CCCCCCCCcceEEEEe--ceeeeEEEeeeEeeecceEEeccccceee
Q 038108 20 PGSCPYCGGKVLAIDF--ESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dv--es~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
...|+.||-.|...|. +.. --.| +..=|.|+.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~------~~~~-H~~CF~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYK------GTVW-HKDCFTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECS------SCEE-ETTTCCCSSSCCCCT
T ss_pred CCcCccCCcccccCceEEEEC------cccc-ccccCchhhCCCccC
Confidence 4689999999875442 111 1112 345577888888875
No 148
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.12 E-value=9.2 Score=18.10 Aligned_cols=14 Identities=29% Similarity=0.911 Sum_probs=10.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ep0_A 10 EKPYKCDVCHKSFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCcccCcccC
Confidence 46789999988754
No 149
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.02 E-value=5 Score=18.74 Aligned_cols=14 Identities=36% Similarity=0.978 Sum_probs=9.6
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2eos_A 9 EKPYPCEICGTRFR 22 (42)
T ss_dssp SCCBCCSSSCCCBS
T ss_pred CCCEECCCCCCccC
Confidence 45678888887653
No 150
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.98 E-value=4.7 Score=18.68 Aligned_cols=13 Identities=31% Similarity=0.830 Sum_probs=8.9
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|+.|++..
T Consensus 8 ~k~~~C~~C~k~f 20 (42)
T 2yte_A 8 EKPYSCAECKETF 20 (42)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCeECCCCCCcc
Confidence 3567788887754
No 151
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=40.81 E-value=9.4 Score=18.99 Aligned_cols=14 Identities=14% Similarity=0.539 Sum_probs=10.5
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 22 ~k~~~C~~C~k~f~ 35 (54)
T 1yui_A 22 EQPATCPICYAVIR 35 (54)
T ss_dssp SCCEECTTTCCEES
T ss_pred CCCccCCCCCcccC
Confidence 46788999988754
No 152
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=40.38 E-value=11 Score=21.09 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=19.6
Q ss_pred CCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 20 PGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
.-.||.||+.-.+.|-++. -.+|+.||..|.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~g--------------e~vC~~CGlVl~ 41 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAG--------------DMICPECGLVVG 41 (58)
T ss_dssp CCSBTTBSSSCCEECSSSC--------------CEECTTTCCEEC
T ss_pred cccCcCCCCCceeEeCCCC--------------eEEeCCCCCEEe
Confidence 3469999984444554433 356778877664
No 153
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=39.79 E-value=6.7 Score=19.63 Aligned_cols=14 Identities=14% Similarity=0.634 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.||+...
T Consensus 6 ekp~~C~~CgK~F~ 19 (36)
T 1fv5_A 6 PARFMCLPCGIAFS 19 (36)
T ss_dssp CCCCEETTTTEECS
T ss_pred ccCeECCCCCCccC
Confidence 46789999998754
No 154
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.77 E-value=15 Score=18.88 Aligned_cols=12 Identities=17% Similarity=0.789 Sum_probs=6.4
Q ss_pred ceEEecccccee
Q 038108 52 KKYFCSLCSRRL 63 (67)
Q Consensus 52 r~~~Ct~C~r~L 63 (67)
|.|.|..|++..
T Consensus 9 ~~~~C~~C~k~f 20 (66)
T 2eod_A 9 RTQPCTYCTKEF 20 (66)
T ss_dssp CEEECSSSCCEE
T ss_pred CCeeccccCCcc
Confidence 455566665543
No 155
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.49 E-value=5.9 Score=22.48 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=23.6
Q ss_pred CCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 19 APGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
.+..|+.||..|...++-.. +--.| +..=|.|+.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a-----~~~~w-H~~CF~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA-----LDKQW-HVSCFKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE-----TTEEE-CTTTCBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE-----CCccc-ccccCCcCcCCCCcC
Confidence 35579999998864332111 11111 334577888888874
No 156
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.24 E-value=4.5 Score=21.93 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=22.7
Q ss_pred CCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 20 PGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
...|+.||-+|...+.... .+--.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~----a~~~~~-H~~CF~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV----ALDRVF-HVGCFVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE----CSSSEE-CTTTCBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE----ECCCeE-cccCCcccccCCcCC
Confidence 4689999988875321100 011111 234577888888874
No 157
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.10 E-value=4.1 Score=22.80 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=24.2
Q ss_pred eecCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 16 RQQAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 16 ~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
+.+....|+.|+-.|...-|+. +--.| +..=|.|+.|++.|.
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~~a------~~~~~-H~~CF~C~~C~~~L~ 52 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGVFVKL------RDRHR-HPECYVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCCCSSSCCCCCSSCEEC------SSCEE-CTTTTSCSSSCCCHH
T ss_pred CCCCCCccccCCCCccCcEEEE------Cccee-CcCcCeeCCCCCCCC
Confidence 3445678999999887411111 11111 233467888888874
No 158
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=38.89 E-value=11 Score=31.15 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=10.3
Q ss_pred CCCCCCCCcceEE
Q 038108 20 PGSCPYCGGKVLA 32 (67)
Q Consensus 20 pG~Cp~CGG~v~a 32 (67)
.++||+|||.++.
T Consensus 8 ~~~C~~Cg~~~~~ 20 (1104)
T 4ddu_A 8 HHSCINCGGLNTD 20 (1104)
T ss_dssp TTCCTTTSSCEEH
T ss_pred hhcCCCCcCcCch
Confidence 3699999997653
No 159
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=38.47 E-value=11 Score=18.36 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=11.0
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 30 ~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 30 EKPYKCEFCEYAAA 43 (57)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCcCCCCCcchhC
Confidence 46799999998754
No 160
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.46 E-value=5.5 Score=18.95 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=9.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2enf_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CcCeECCCCCcccC
Confidence 46688888887643
No 161
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=38.35 E-value=4.1 Score=18.21 Aligned_cols=10 Identities=30% Similarity=1.079 Sum_probs=7.1
Q ss_pred eEEeccccce
Q 038108 53 KYFCSLCSRR 62 (67)
Q Consensus 53 ~~~Ct~C~r~ 62 (67)
.|.|..|++.
T Consensus 2 p~~C~~C~k~ 11 (32)
T 2kfq_A 2 AFACPACPKR 11 (32)
T ss_dssp CSSSSSSCTT
T ss_pred CCCCCCCCcc
Confidence 4678888765
No 162
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=38.30 E-value=5.8 Score=18.95 Aligned_cols=14 Identities=21% Similarity=0.693 Sum_probs=9.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ely_A 10 EKPFKCVECGKGFS 23 (46)
T ss_dssp CCSBCCSSSCCCBS
T ss_pred CCCcccCccCcccC
Confidence 45678888887654
No 163
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.19 E-value=5.7 Score=18.36 Aligned_cols=14 Identities=29% Similarity=0.833 Sum_probs=9.2
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2ytb_A 9 EKPYRCDQCGKAFS 22 (42)
T ss_dssp CCSBCCTTTTCCBS
T ss_pred CCCeeCCCccchhC
Confidence 35677877877543
No 164
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=38.17 E-value=11 Score=24.04 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=17.8
Q ss_pred cCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEecccc
Q 038108 18 QAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCS 60 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~ 60 (67)
+.--.||+||-.+- +..+..|..||
T Consensus 14 KtH~lCrRCG~~sf------------------H~qK~~CgkCG 38 (97)
T 2zkr_2 14 KTHTLCRRCGSKAY------------------HLQKSTCGKCG 38 (97)
T ss_dssp CCEECCTTTCSSCE------------------ETTSCCBTTTC
T ss_pred CCCCcCCCCCCccC------------------cCccccCcccC
Confidence 34457999998753 45677888887
No 165
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.16 E-value=5.6 Score=18.84 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=9.4
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eov_A 10 EKPYKCSDCGKSFT 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CCCccCCccChhhC
Confidence 45677888877643
No 166
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=38.11 E-value=6.4 Score=18.69 Aligned_cols=14 Identities=36% Similarity=0.954 Sum_probs=10.3
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (45)
T 2epq_A 8 EKPYSCPVCGLRFK 21 (45)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCCcCCCCCcccC
Confidence 46788888887653
No 167
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.92 E-value=7.3 Score=20.93 Aligned_cols=38 Identities=16% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 20 PGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
...|+.|+-+|.+-.|+.. --.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~------~~~~-H~~CF~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYR------EQPW-HKECFVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSSEEESS------SSEE-ETTTSBCSSSCCBCT
T ss_pred CCCCcccCCeeccceEEEC------cccc-CCCCCccCCCCCcCC
Confidence 4579999998864222211 1111 234477899988874
No 168
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.65 E-value=16 Score=18.36 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=11.6
Q ss_pred cceEEeccccceeee
Q 038108 51 KKKYFCSLCSRRLEL 65 (67)
Q Consensus 51 kr~~~Ct~C~r~L~~ 65 (67)
.+.|.|+.|++....
T Consensus 16 ~~~~~C~~C~k~f~~ 30 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIR 30 (73)
T ss_dssp CSEEECSSSCCEEEC
T ss_pred CCCeeCCcccchhCC
Confidence 467899999987653
No 169
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.38 E-value=5.9 Score=19.00 Aligned_cols=14 Identities=29% Similarity=0.909 Sum_probs=10.0
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eon_A 10 EKPYKCQVCGKAFR 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CcccCCCCCCcccC
Confidence 46688888887653
No 170
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=37.36 E-value=6.4 Score=24.26 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=9.2
Q ss_pred cCCCCCCCCCcce
Q 038108 18 QAPGSCPYCGGKV 30 (67)
Q Consensus 18 ~ApG~Cp~CGG~v 30 (67)
+-+..|||||-..
T Consensus 51 ~g~~~CpYCg~~f 63 (80)
T 2jvm_A 51 TGFVECGYCDRRY 63 (80)
T ss_dssp TCEEECSSSSCEE
T ss_pred CCeEECCCCCCEE
Confidence 3456899999654
No 171
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=37.22 E-value=8.6 Score=22.15 Aligned_cols=7 Identities=43% Similarity=1.288 Sum_probs=6.0
Q ss_pred CCCCCCc
Q 038108 22 SCPYCGG 28 (67)
Q Consensus 22 ~Cp~CGG 28 (67)
.||+||.
T Consensus 15 ~CpnC~~ 21 (59)
T 3lpe_B 15 ICPICHS 21 (59)
T ss_dssp BCTTTCC
T ss_pred CCCCCCC
Confidence 4999995
No 172
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.17 E-value=6.4 Score=18.61 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=10.1
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eq3_A 10 EKPYECNQCGKAFS 23 (46)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCeECCCCChhhC
Confidence 45688888887653
No 173
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=37.15 E-value=12 Score=20.51 Aligned_cols=16 Identities=38% Similarity=0.835 Sum_probs=11.4
Q ss_pred eeeecCCC--CCCCCCcc
Q 038108 14 LGRQQAPG--SCPYCGGK 29 (67)
Q Consensus 14 ~~~~~ApG--~Cp~CGG~ 29 (67)
+.-+..|. .||-||.+
T Consensus 22 t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 22 VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCGGGSCTTCBCTTTCCB
T ss_pred cchhhCCCCCcCcCCCCc
Confidence 34445666 99999975
No 174
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.01 E-value=5.9 Score=18.83 Aligned_cols=14 Identities=21% Similarity=0.783 Sum_probs=9.6
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emg_A 10 ENPFICSECGKVFT 23 (46)
T ss_dssp CCSCBCTTTCCBCS
T ss_pred CCCEECCccCcccC
Confidence 45678888887643
No 175
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.95 E-value=4.6 Score=18.89 Aligned_cols=13 Identities=31% Similarity=0.889 Sum_probs=8.4
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2en7_A 10 MKPYVCNECGKAF 22 (44)
T ss_dssp SSSSCCTTTCCCC
T ss_pred CcCeECCCCCCcc
Confidence 3557777777654
No 176
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=36.87 E-value=12 Score=22.18 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=10.4
Q ss_pred CCCCCCcceEEEEeceeeeEE
Q 038108 22 SCPYCGGKVLAIDFESQCRFC 42 (67)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfC 42 (67)
.|| ||-. .++|=.+.|+-|
T Consensus 6 ~C~-C~~~-~~~~~~~kT~~C 24 (71)
T 1gh9_A 6 RCD-CGRA-LYSREGAKTRKC 24 (71)
T ss_dssp EET-TSCC-EEEETTCSEEEE
T ss_pred ECC-CCCE-EEEcCCCcEEEC
Confidence 377 7655 445545555544
No 177
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.36 E-value=4.6 Score=21.82 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=22.5
Q ss_pred CCCCCCCCCcceEEEE-eceeeeEEEeeeEeeecceEEeccccceee
Q 038108 19 APGSCPYCGGKVLAID-FESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 19 ApG~Cp~CGG~v~a~D-ves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
-...|+.||-+|...+ +-+. .--.| +..=|.|+.|++.|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a-----~~~~~-H~~CF~C~~C~~~L~ 44 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEY-----GGQTW-HEHCFLCSGCEQPLG 44 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECS-----TTCCE-ETTTCBCTTTCCBTT
T ss_pred cCCCCccCCCccccCccEEEE-----Ccccc-CcccCeECCCCCcCC
Confidence 3468999999887532 1110 00111 234467888887775
No 178
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.20 E-value=6.5 Score=18.76 Aligned_cols=14 Identities=29% Similarity=0.866 Sum_probs=9.6
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yth_A 10 EKPFQCEECGKRFT 23 (46)
T ss_dssp SSSBCCSSSCCCBS
T ss_pred CcCCCCCCCCcccC
Confidence 45678888887643
No 179
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.96 E-value=5.7 Score=18.87 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=9.0
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|+.|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq1_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp SCCCCCTTTTCCC
T ss_pred CCCeECCcCChhh
Confidence 4567788887754
No 180
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=35.86 E-value=18 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=13.7
Q ss_pred CCCCCCCcceEEEEeceeee
Q 038108 21 GSCPYCGGKVLAIDFESQCR 40 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~r 40 (67)
..||+||..-++.-||+.--
T Consensus 53 akcprcgaegsvsivetkng 72 (131)
T 2x5c_A 53 AKCPRCGAEGSVSIVETKNG 72 (131)
T ss_dssp EECTTTSCEEEEEEEECTTS
T ss_pred ccCCCCCCccceEEEEecCC
Confidence 35999997666666665443
No 181
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=35.81 E-value=3.9 Score=22.89 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=13.3
Q ss_pred eeeeecCCCCCCCCCcceEEE
Q 038108 13 ELGRQQAPGSCPYCGGKVLAI 33 (67)
Q Consensus 13 v~~~~~ApG~Cp~CGG~v~a~ 33 (67)
|+..|+..-.||.|+|.=...
T Consensus 2 ~~~~qq~~~~C~~C~GsG~~i 22 (53)
T 3lcz_A 2 VIATDDLETTCPNCNGSGREE 22 (53)
T ss_dssp CSCHHHHEEECTTTTTSCEET
T ss_pred eeecCceeccCcCCcccccCC
Confidence 445555666788887765543
No 182
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.66 E-value=6.4 Score=18.70 Aligned_cols=14 Identities=36% Similarity=0.819 Sum_probs=9.6
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2ytn_A 10 KKPYKCNECGKVFT 23 (46)
T ss_dssp CSSCBCTTTCCBCS
T ss_pred CcCeECCCCCCeeC
Confidence 45677888877643
No 183
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.60 E-value=6.8 Score=18.55 Aligned_cols=14 Identities=29% Similarity=0.897 Sum_probs=9.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (43)
T 2yrm_A 8 NGAFFCNECDCRFS 21 (43)
T ss_dssp SCCBCCSSSCCCBS
T ss_pred CCCEECCCCCCeeC
Confidence 45688888887653
No 184
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=35.18 E-value=12 Score=23.43 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=9.1
Q ss_pred CCCCCCCCCcceE
Q 038108 19 APGSCPYCGGKVL 31 (67)
Q Consensus 19 ApG~Cp~CGG~v~ 31 (67)
-...|||||-...
T Consensus 47 g~~~CpYCg~~y~ 59 (87)
T 2jz8_A 47 DEKICPYCSTLYR 59 (87)
T ss_dssp CEECCTTTCCEEE
T ss_pred CeEECCCCCCEeE
Confidence 3458999996543
No 185
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.99 E-value=6.3 Score=18.62 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=9.4
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (44)
T 2eou_A 10 KTTSECQECGKIFR 23 (44)
T ss_dssp SCCCCCTTTCCCCS
T ss_pred CcCeECCCCCcccC
Confidence 45677888877643
No 186
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.95 E-value=7 Score=18.61 Aligned_cols=14 Identities=29% Similarity=0.883 Sum_probs=9.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em6_A 10 EKCYKCDVCGKEFS 23 (46)
T ss_dssp CCCCBCSSSCCBCS
T ss_pred CCCeECCCCCcccC
Confidence 45678888887643
No 187
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.92 E-value=6.4 Score=18.76 Aligned_cols=14 Identities=29% Similarity=0.883 Sum_probs=9.6
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2enh_A 10 EKPYECDVCRKAFS 23 (46)
T ss_dssp SSSCBCTTTCCBCS
T ss_pred CCCcCCCCcCchhC
Confidence 45678888887643
No 188
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=34.90 E-value=9.1 Score=22.28 Aligned_cols=12 Identities=42% Similarity=1.002 Sum_probs=9.5
Q ss_pred CCCCCCCCcceE
Q 038108 20 PGSCPYCGGKVL 31 (67)
Q Consensus 20 pG~Cp~CGG~v~ 31 (67)
...||.||+...
T Consensus 18 k~~CP~CG~~T~ 29 (60)
T 2apo_B 18 KEICPKCGEKTV 29 (60)
T ss_dssp SSBCSSSCSBCB
T ss_pred cccCcCCCCcCC
Confidence 567999998754
No 189
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.83 E-value=7.4 Score=18.38 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=10.2
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2eoe_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCeECCCcChhhC
Confidence 46788888887643
No 190
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=34.82 E-value=6.2 Score=19.83 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=17.7
Q ss_pred EEEcCCceeeeeeecCCCCCCCCCc
Q 038108 4 VYVCSEEERELGRQQAPGSCPYCGG 28 (67)
Q Consensus 4 ~~vcde~~kv~~~~~ApG~Cp~CGG 28 (67)
+|-|++.+-+.+.=+++..|-+||.
T Consensus 3 C~~Cg~~GH~~~~C~~~~~C~~Cg~ 27 (37)
T 2bl6_A 3 CYNCGKPGHLSSQCRAPKVCFKCKQ 27 (37)
T ss_dssp BSSSCCSSCCTTTSSCBTTCSSCCC
T ss_pred ccccCCCCcchhhCcCcCeEccCCC
Confidence 4556677766666667788888885
No 191
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=34.81 E-value=10 Score=21.20 Aligned_cols=9 Identities=33% Similarity=1.302 Sum_probs=6.7
Q ss_pred EEeccccce
Q 038108 54 YFCSLCSRR 62 (67)
Q Consensus 54 ~~Ct~C~r~ 62 (67)
..||||||.
T Consensus 12 ~~CSFCGk~ 20 (51)
T 2ds5_A 12 LYCSFCGKS 20 (51)
T ss_dssp CBCTTTCCB
T ss_pred cEecCCCCC
Confidence 468999874
No 192
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.73 E-value=6.8 Score=18.67 Aligned_cols=14 Identities=29% Similarity=0.726 Sum_probs=9.4
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2elz_A 10 EKPYKCEDCGKGYN 23 (46)
T ss_dssp CSSCBCSSSCCBCS
T ss_pred CCCeeCcccCchhC
Confidence 45677888877643
No 193
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=34.70 E-value=14 Score=21.48 Aligned_cols=13 Identities=38% Similarity=0.938 Sum_probs=10.0
Q ss_pred CCCCCCCCcceEE
Q 038108 20 PGSCPYCGGKVLA 32 (67)
Q Consensus 20 pG~Cp~CGG~v~a 32 (67)
...||.||+....
T Consensus 17 k~~CP~CG~~t~~ 29 (60)
T 2aus_D 17 KETCPVCGEKTKV 29 (60)
T ss_dssp SSBCTTTCSBCEE
T ss_pred cccCcCCCCccCC
Confidence 4579999998654
No 194
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.69 E-value=7.1 Score=18.61 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=9.6
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2en9_A 10 KKLFKCNECKKTFT 23 (46)
T ss_dssp SCCCBCTTTCCBCS
T ss_pred CCCEECCccCcccC
Confidence 45678888887643
No 195
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=34.68 E-value=10 Score=22.69 Aligned_cols=9 Identities=44% Similarity=1.328 Sum_probs=6.8
Q ss_pred CCCCCCCCc
Q 038108 20 PGSCPYCGG 28 (67)
Q Consensus 20 pG~Cp~CGG 28 (67)
.-.||+||.
T Consensus 23 ~~~CPnC~s 31 (69)
T 1ryq_A 23 EDRCPVCGS 31 (69)
T ss_dssp SSSCTTTCC
T ss_pred CCcCCCccC
Confidence 347999984
No 196
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=34.47 E-value=3.4 Score=22.96 Aligned_cols=40 Identities=23% Similarity=0.487 Sum_probs=29.1
Q ss_pred ecCCCCCC-CCCcceEEEEeceeee-EEEeeeEeeecceEEecccccee
Q 038108 17 QQAPGSCP-YCGGKVLAIDFESQCR-FCFLPICYNIKKKYFCSLCSRRL 63 (67)
Q Consensus 17 ~~ApG~Cp-~CGG~v~a~Dves~~r-fCflP~~~k~kr~~~Ct~C~r~L 63 (67)
.-++-.|| .||..+.-.|++.... -| .+|...|.+|+..+
T Consensus 13 ~~~~v~C~~~C~~~v~r~~l~~H~~~~C-------~~r~v~C~~C~~~~ 54 (76)
T 2yuc_A 13 SFNVIPCPNRCPMKLSRRDLPAHLQHDC-------PKRRLKCEFCGCDF 54 (76)
T ss_dssp CCSCCBCTTCCSCBCCSSSSTTTTTTSC-------TTSCCCCSSSCCCC
T ss_pred CCcccCCCccccHHhhHhHHHhhCHhhC-------CCcceECCCCCCcc
Confidence 34567785 7999999999887765 45 35777888887654
No 197
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.43 E-value=7.3 Score=18.55 Aligned_cols=14 Identities=36% Similarity=0.797 Sum_probs=9.6
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytq_A 10 EKPYGCSECGKAFS 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CCCcCCCccChhhC
Confidence 45678888887643
No 198
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=34.43 E-value=6.3 Score=23.45 Aligned_cols=13 Identities=38% Similarity=0.795 Sum_probs=9.1
Q ss_pred cCCCCCCCCCcce
Q 038108 18 QAPGSCPYCGGKV 30 (67)
Q Consensus 18 ~ApG~Cp~CGG~v 30 (67)
+-+..|||||-..
T Consensus 38 ~g~~~CpYCg~~f 50 (67)
T 2jrr_A 38 TGWVECPYCDCKY 50 (67)
T ss_dssp TSEEEETTTTEEE
T ss_pred CCeEECCCCCCEE
Confidence 3456899998544
No 199
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=34.38 E-value=18 Score=21.82 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=12.3
Q ss_pred ecceEEeccccceee
Q 038108 50 IKKKYFCSLCSRRLE 64 (67)
Q Consensus 50 ~kr~~~Ct~C~r~L~ 64 (67)
..++++|+.||-.|-
T Consensus 64 ~~~r~FC~~CGs~l~ 78 (118)
T 3fac_A 64 TAKHWFCRTCGIYTH 78 (118)
T ss_dssp CSEEEEETTTCCEEE
T ss_pred CEeeEECCCCCcccc
Confidence 357899999998874
No 200
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.37 E-value=7.3 Score=18.42 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=9.6
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (47)
T 2epx_A 10 KKPYECIECGKAFI 23 (47)
T ss_dssp CCSBCCSSSCCCBS
T ss_pred CCCEECCccCchhC
Confidence 45678888887643
No 201
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.36 E-value=14 Score=19.44 Aligned_cols=14 Identities=36% Similarity=0.890 Sum_probs=9.5
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 13 ~k~~~C~~C~k~f~ 26 (77)
T 2ct1_A 13 EKPYECYICHARFT 26 (77)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCeECCCcCchhC
Confidence 45677888877654
No 202
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=34.30 E-value=13 Score=25.15 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=10.8
Q ss_pred cCCCCCCCCCcceE
Q 038108 18 QAPGSCPYCGGKVL 31 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~ 31 (67)
.|.+.||.|+|.+.
T Consensus 76 Gal~~CP~C~G~l~ 89 (160)
T 2riq_A 76 GALLPCEECSGQLV 89 (160)
T ss_dssp CEECCCTTTCCCEE
T ss_pred CCCCCCCCCCCEEE
Confidence 46789999998544
No 203
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=34.30 E-value=17 Score=21.18 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=8.1
Q ss_pred CCCCCcceEE
Q 038108 23 CPYCGGKVLA 32 (67)
Q Consensus 23 Cp~CGG~v~a 32 (67)
||.|+.++.+
T Consensus 28 CP~C~~~~~~ 37 (86)
T 2ct7_A 28 CAQCSFGFIY 37 (86)
T ss_dssp CSSSCCCEEC
T ss_pred CcCCCchhee
Confidence 9999988754
No 204
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.24 E-value=6.2 Score=18.82 Aligned_cols=14 Identities=14% Similarity=0.702 Sum_probs=9.5
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emz_A 10 ERPFKCNECGKGFG 23 (46)
T ss_dssp CCSCCCSSSCCCCS
T ss_pred CCCeECCCCCcccC
Confidence 45677888877643
No 205
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=34.07 E-value=14 Score=18.98 Aligned_cols=14 Identities=29% Similarity=0.904 Sum_probs=11.1
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 47 ~~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 47 QKPFQCRICMRNFS 60 (73)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCeECCCCCchhC
Confidence 46799999998754
No 206
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=33.98 E-value=14 Score=17.97 Aligned_cols=14 Identities=21% Similarity=0.792 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 27 ~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 27 VRPYHCTYCNFSFK 40 (57)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCchhc
Confidence 46799999998754
No 207
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.91 E-value=7.1 Score=18.45 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=8.8
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|+.|++..
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eop_A 10 EKPHECRECGKSF 22 (46)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCeeCCCCCchh
Confidence 4567777777654
No 208
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.88 E-value=6.5 Score=18.81 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=9.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eom_A 10 ERGHRCSDCGKFFL 23 (46)
T ss_dssp CSSCCCSSSCCCCS
T ss_pred CCCcCCCCCCCeeC
Confidence 45678888887643
No 209
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.68 E-value=5.8 Score=18.79 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=8.9
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ep1_A 10 EKPYECSDCGKSF 22 (46)
T ss_dssp CCSSCCSSSCCCC
T ss_pred CCCcCCCCCCchh
Confidence 4567788887764
No 210
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=33.31 E-value=17 Score=18.00 Aligned_cols=14 Identities=29% Similarity=0.850 Sum_probs=9.2
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (54)
T 2eps_A 10 GKPYICQSCGKGFS 23 (54)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCcccC
Confidence 35677777777653
No 211
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=33.28 E-value=21 Score=26.21 Aligned_cols=34 Identities=32% Similarity=0.843 Sum_probs=19.9
Q ss_pred CCCCCCCCc-ceEEEEeceeeeEEEeeeEeeecceEEeccccceeee
Q 038108 20 PGSCPYCGG-KVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLEL 65 (67)
Q Consensus 20 pG~Cp~CGG-~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~~ 65 (67)
.+.||+||- .++. .+..... .-|+|..|+-.+++
T Consensus 34 n~yCPnCG~~~l~~--f~nN~PV----------aDF~C~~C~EeyEL 68 (257)
T 4esj_A 34 QSYCPNCGNNPLNH--FENNRPV----------ADFYCNHCSEEFEL 68 (257)
T ss_dssp HCCCTTTCCSSCEE--C----CC----------CEEECTTTCCEEEE
T ss_pred CCcCCCCCChhhhh--ccCCCcc----------cccccCCcchhhee
Confidence 468999998 3533 2222211 23788888877664
No 212
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=33.03 E-value=35 Score=22.99 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=6.8
Q ss_pred cCCCCCCCCCcc
Q 038108 18 QAPGSCPYCGGK 29 (67)
Q Consensus 18 ~ApG~Cp~CGG~ 29 (67)
.+|-.||-||.+
T Consensus 184 ~~p~~CP~C~~~ 195 (202)
T 1yuz_A 184 EDFEKCPICFRP 195 (202)
T ss_dssp SCCSBCTTTCCB
T ss_pred cCCCCCCCCCCC
Confidence 455666666654
No 213
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.00 E-value=7.8 Score=18.37 Aligned_cols=14 Identities=21% Similarity=0.626 Sum_probs=9.7
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2epz_A 10 EKPFDCIDCGKAFS 23 (46)
T ss_dssp CCSBCCTTTCCCBS
T ss_pred CCCeECCCCCceeC
Confidence 45678888887643
No 214
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=32.95 E-value=4.9 Score=26.05 Aligned_cols=37 Identities=27% Similarity=0.542 Sum_probs=21.7
Q ss_pred CCCCCCcceEEEEe-ceeeeEEEeeeEeeecceEEeccccceee
Q 038108 22 SCPYCGGKVLAIDF-ESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 22 ~Cp~CGG~v~a~Dv-es~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
.|+.|+.+|...|. -+...--| +..=|.|+.|++.|.
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~------H~~CF~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVY------HLKCFTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEE------CGGGCBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEEcCCCEE------eCCCCeECCCCCCCC
Confidence 79999999875331 11111111 234577888888874
No 215
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=32.89 E-value=8.4 Score=22.05 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=9.3
Q ss_pred CCCCCCCCcceE
Q 038108 20 PGSCPYCGGKVL 31 (67)
Q Consensus 20 pG~Cp~CGG~v~ 31 (67)
...|+.||-+|.
T Consensus 5 ~~~C~~C~~~I~ 16 (101)
T 2cup_A 5 SSGCVECRKPIG 16 (101)
T ss_dssp CCBCSSSCCBCC
T ss_pred CCcCcccCCccc
Confidence 457888888885
No 216
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=32.85 E-value=29 Score=21.17 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=7.7
Q ss_pred CCCCCCCcceEE
Q 038108 21 GSCPYCGGKVLA 32 (67)
Q Consensus 21 G~Cp~CGG~v~a 32 (67)
..||-|+..+..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 357777766654
No 217
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.76 E-value=7.9 Score=22.03 Aligned_cols=39 Identities=15% Similarity=0.354 Sum_probs=23.4
Q ss_pred CCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 19 APGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
....|..|+..|...-|+. +--.| +..=|.|+.|++.|.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a------~~~~~-H~~CF~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKA------RDKYR-HPECFVCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCSCCEES------SSCEE-CTTTCCCSSSCCCTT
T ss_pred cCCCcccCCCEecccEEEE------CCceE-CccCCEecCCCCCCC
Confidence 4467999999887411111 11112 334577999988875
No 218
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.48 E-value=6.2 Score=21.88 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=19.3
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeee--cceEEeccccceee
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNI--KKKYFCSLCSRRLE 64 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~--kr~~~Ct~C~r~L~ 64 (67)
-.|+.||.+|...-|+ .--++ ..=|.|+.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~v~---------a~~~~wH~~CF~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLE---------AGEKHYHPSCALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBC---------CSSCCBCTTTSCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEE---------eCCCCCCCCcCEeCCCCCCCC
Confidence 4799999887641111 11122 23366777777764
No 219
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.36 E-value=8.2 Score=18.21 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=9.5
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eq4_A 10 EKLYNCKECGKSFS 23 (46)
T ss_dssp CCCCCBTTTTBCCS
T ss_pred CCCeECCCCCCccC
Confidence 45677888877643
No 220
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.29 E-value=7.2 Score=18.50 Aligned_cols=13 Identities=23% Similarity=0.943 Sum_probs=8.8
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eoq_A 10 EKPFKCDICGKSF 22 (46)
T ss_dssp SCSCCCSSSCCCC
T ss_pred CCCcCCCcCCchh
Confidence 4567777777654
No 221
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.21 E-value=8.8 Score=21.12 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=23.8
Q ss_pred CCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceeee
Q 038108 20 PGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLEL 65 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~~ 65 (67)
...|+.||.+|..--|+ .+--.| +..=|.|+.|++.|..
T Consensus 15 ~~~C~~C~~~I~~~~v~------a~~~~~-H~~CF~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLENYLS------AMDTVW-HPECFVCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCSSCEE------ETTEEE-CTTTCBCSSSCCBSCS
T ss_pred CCccccCCCeecceeEE------ECCCeE-ecCcCChhhCCCCCCC
Confidence 35899999998741111 111112 3355789999998863
No 222
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.11 E-value=7.3 Score=18.56 Aligned_cols=13 Identities=38% Similarity=0.879 Sum_probs=9.2
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eoh_A 10 KKPYECKECRKTF 22 (46)
T ss_dssp SCSCCCSSSCCCC
T ss_pred CCCcCCCCcCchh
Confidence 4567788887764
No 223
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=32.10 E-value=34 Score=25.19 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=10.1
Q ss_pred cCCCCCCCCCcceE
Q 038108 18 QAPGSCPYCGGKVL 31 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~ 31 (67)
+.+..||+||+...
T Consensus 261 ~~~~~C~~cg~~~~ 274 (392)
T 3axs_A 261 KFKEKCPHCGSKFH 274 (392)
T ss_dssp GCCSBCTTTCSBCE
T ss_pred CCCCcCCCCCCccc
Confidence 56778888886544
No 224
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=32.03 E-value=15 Score=18.13 Aligned_cols=14 Identities=43% Similarity=1.001 Sum_probs=10.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 28 ~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 28 EKPYPCGLCNRAFT 41 (60)
T ss_dssp SCSEECTTTCCEES
T ss_pred CCCccCCCCCCccC
Confidence 46799999998754
No 225
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=31.62 E-value=21 Score=19.46 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=11.5
Q ss_pred eeecCCCCCCCCCcce
Q 038108 15 GRQQAPGSCPYCGGKV 30 (67)
Q Consensus 15 ~~~~ApG~Cp~CGG~v 30 (67)
+.+...-.||.||+.-
T Consensus 4 ~~~t~~~~Cp~Cg~~~ 19 (50)
T 1tfi_A 4 GTQTDLFTCGKCKKKN 19 (50)
T ss_dssp CEECCCSCCSSSCSSC
T ss_pred CceeCccCCCCCCCCE
Confidence 4455566899999753
No 226
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.60 E-value=6 Score=18.81 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=8.5
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq2_A 10 GKPYQCNECGKAF 22 (46)
T ss_dssp SCSSSCCSSCCCC
T ss_pred CCCeECCCCCccc
Confidence 3557777777654
No 227
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=31.48 E-value=8.5 Score=18.31 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=8.9
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emk_A 10 EKPYECKECGKAF 22 (46)
T ss_dssp SCSCBCSSSCCBC
T ss_pred CCceECCCCCchh
Confidence 4567788887764
No 228
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.44 E-value=20 Score=19.73 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=23.4
Q ss_pred CCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 19 APGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
....|+.||.+|...-|+ .+--.| +..=|.|+.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~------a~~~~~-H~~CF~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILR------AMGKAY-HPGCFTCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCSCCEE------ETTEEE-CTTTCBCSSSCCBCT
T ss_pred CCCccccCCCeecceeEE------ECCccc-cHHhcCcccCCCccC
Confidence 457899999998621111 111112 334577999988875
No 229
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.19 E-value=9.2 Score=21.22 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=20.3
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
-.|+.||..|...-|+. +--.| +..=|.|+.|++.|.
T Consensus 16 ~~C~~C~~~I~~~~v~a------~~~~w-H~~CF~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSA------LGKTY-HPDCFVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEE------TTEEE-CTTTSSCSSSCCCCC
T ss_pred CcCccccCEeccceEEE------CCcee-CccCCccccCCCCCC
Confidence 38999999887321111 11111 234456777777764
No 230
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=31.13 E-value=29 Score=25.04 Aligned_cols=29 Identities=28% Similarity=0.655 Sum_probs=20.9
Q ss_pred CCCCCCc--ceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 22 SCPYCGG--KVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 22 ~Cp~CGG--~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
.||.||+ .-.+.|.++. -++|+.||-.|.
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G--------------~~vC~~CGlVl~ 53 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEG--------------DVVCALCGLVLS 53 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGT--------------EEEETTTCBEEE
T ss_pred cCCCCCCCCCceeEECCCC--------------cEEeCCCCCCcc
Confidence 7999998 4566777654 456678887764
No 231
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=31.06 E-value=15 Score=22.32 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=9.0
Q ss_pred cCCCCCCCCCcc
Q 038108 18 QAPGSCPYCGGK 29 (67)
Q Consensus 18 ~ApG~Cp~CGG~ 29 (67)
..---||.||++
T Consensus 28 ~~k~FCp~CGn~ 39 (79)
T 2con_A 28 MNRVFCGHCGNK 39 (79)
T ss_dssp SSCCSCSSSCCS
T ss_pred cccccccccCcc
Confidence 344579999996
No 232
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.97 E-value=17 Score=19.06 Aligned_cols=14 Identities=29% Similarity=0.954 Sum_probs=11.1
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 36 ~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 36 ALRFPCEFCGKRFE 49 (78)
T ss_dssp TCCEECTTTCCEES
T ss_pred CcccCCCCCCchhC
Confidence 46799999998764
No 233
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.81 E-value=16 Score=18.74 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=8.1
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 7 ~~~~~C~~C~k~f 19 (70)
T 1x5w_A 7 GHPEKCSECSYSC 19 (70)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCeECCCCCccc
Confidence 3556777776654
No 234
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.72 E-value=16 Score=20.01 Aligned_cols=42 Identities=19% Similarity=0.446 Sum_probs=20.8
Q ss_pred CCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 20 PGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
+..|+.||-+|..+ ..+..+=.+--.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~--g~~~~~~a~~~~w-H~~CF~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGL--TGAKFICFQDSQW-HSECFNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTT--TTCCEEEETTEEE-EGGGCBCTTTCCBCS
T ss_pred CCCCccCCCcccCC--CCceeEEECCccc-CcccCChhhCCCcCC
Confidence 45799999887630 0000000011111 334567777777764
No 235
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=30.54 E-value=28 Score=21.28 Aligned_cols=13 Identities=46% Similarity=0.961 Sum_probs=10.8
Q ss_pred CCCCCCCCCcceE
Q 038108 19 APGSCPYCGGKVL 31 (67)
Q Consensus 19 ApG~Cp~CGG~v~ 31 (67)
..|.|+|||..+.
T Consensus 34 ~~~~C~yCg~~~~ 46 (112)
T 2qgp_A 34 ARGICHYCGEIFP 46 (112)
T ss_dssp HHTBCTTTCCBCC
T ss_pred cCCcCCCCCCcCC
Confidence 5689999998863
No 236
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=30.44 E-value=8.8 Score=16.49 Aligned_cols=11 Identities=27% Similarity=1.222 Sum_probs=7.2
Q ss_pred eEEec--ccccee
Q 038108 53 KYFCS--LCSRRL 63 (67)
Q Consensus 53 ~~~Ct--~C~r~L 63 (67)
.|.|+ .||+..
T Consensus 2 p~~C~~~~C~k~f 14 (31)
T 1sp2_A 2 PFMCTWSYCGKRF 14 (31)
T ss_dssp CCBCCSTTCCCBC
T ss_pred CcCCcCCCCCccc
Confidence 46676 777654
No 237
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.22 E-value=23 Score=19.99 Aligned_cols=40 Identities=13% Similarity=0.363 Sum_probs=24.2
Q ss_pred cCCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 18 QAPGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
.....|+.||..|..- .+-.+--.| ++.=|.|+.|++.|.
T Consensus 23 ~~~~~C~~C~~~I~~~------~v~a~~~~~-H~~CF~C~~C~~~L~ 62 (90)
T 2dar_A 23 KRTPMCAHCNQVIRGP------FLVALGKSW-HPEEFNCAHCKNTMA 62 (90)
T ss_dssp TCCCBBSSSCCBCCSC------EEEETTEEE-CTTTCBCSSSCCBCS
T ss_pred CCCCCCccCCCEecce------EEEECCccc-cccCCccCCCCCCCC
Confidence 3456799999988421 111111122 345688999998885
No 238
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=30.17 E-value=19 Score=22.11 Aligned_cols=39 Identities=23% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 20 PGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
+..|+.||..|.... .+-.+--.| +..=|.|+.|++.|.
T Consensus 61 ~~~C~~C~~~I~~~~-----~v~a~~~~w-H~~CF~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF-----LLYAMDSYW-HSRCLKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS-----EEEETTEEE-ETTTSBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE-----EEEeCCcEE-cccccCcCcCCCccc
Confidence 457999999886321 111111112 235578999999984
No 239
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.15 E-value=18 Score=18.73 Aligned_cols=12 Identities=33% Similarity=0.802 Sum_probs=6.7
Q ss_pred ceEEecccccee
Q 038108 52 KKYFCSLCSRRL 63 (67)
Q Consensus 52 r~~~Ct~C~r~L 63 (67)
+.|.|..|++..
T Consensus 13 k~~~C~~C~k~f 24 (72)
T 1x6e_A 13 KPYGCVECGKAF 24 (72)
T ss_dssp CCEECSSSCCEE
T ss_pred CCccCCCCCCcc
Confidence 455666666544
No 240
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.77 E-value=19 Score=18.73 Aligned_cols=41 Identities=20% Similarity=0.433 Sum_probs=23.3
Q ss_pred cCCCCCCCCCcceEE-EEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 18 QAPGSCPYCGGKVLA-IDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~a-~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
.-+-.|+.||-...- .++....+ .....+.|.|..|++...
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~H~~------~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLASHKT------VHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHHHHH------HHCCCCSEECTTTCCEES
T ss_pred CCCeECCCCCceeCCHHHHHHHHH------HcCCCCCEECCCCCchhC
Confidence 345678888865432 12222221 112356799999998764
No 241
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=29.63 E-value=19 Score=19.42 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=10.2
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.||+...
T Consensus 30 ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 30 YRPRSCPECGKCFR 43 (60)
T ss_dssp CCCEECTTTCCEES
T ss_pred CcCeECCCCCCCcC
Confidence 46788888887653
No 242
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.62 E-value=6.1 Score=18.71 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=8.1
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytr_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp CCTTCCTTTCCCC
T ss_pred CcCcCCCCCCCcc
Confidence 3456777777654
No 243
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=29.08 E-value=18 Score=25.07 Aligned_cols=13 Identities=38% Similarity=0.994 Sum_probs=9.8
Q ss_pred CCCCCCcceEEEE
Q 038108 22 SCPYCGGKVLAID 34 (67)
Q Consensus 22 ~Cp~CGG~v~a~D 34 (67)
.|..|||.-.+--
T Consensus 136 ~C~~Cgg~fv~~~ 148 (192)
T 2avu_E 136 SCNCCGGNFITHA 148 (192)
T ss_dssp ECTTTCCEEEEES
T ss_pred cCCCCCCCeeCcc
Confidence 5999999866543
No 244
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.03 E-value=7.3 Score=18.62 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=9.4
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytm_A 10 EKPYKCMECGKAFG 23 (46)
T ss_dssp CCSSSBTTTTBCCS
T ss_pred CCCcCCCCCCchhC
Confidence 45677888877643
No 245
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=28.81 E-value=14 Score=21.92 Aligned_cols=9 Identities=33% Similarity=1.302 Sum_probs=6.8
Q ss_pred EEeccccce
Q 038108 54 YFCSLCSRR 62 (67)
Q Consensus 54 ~~Ct~C~r~ 62 (67)
..||||||.
T Consensus 19 ~~CSFCGK~ 27 (67)
T 1ovx_A 19 LYCSFCGKS 27 (67)
T ss_dssp CCCTTTCCC
T ss_pred cEecCCCCC
Confidence 459999874
No 246
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.61 E-value=6.6 Score=18.65 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=8.5
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2yti_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CcCeECCCCCccc
Confidence 3557777777654
No 247
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=28.53 E-value=39 Score=23.51 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=22.2
Q ss_pred CCCCCCcc-eEEEEeceeeeEE-Ee------eeEeeecceEEecccccee
Q 038108 22 SCPYCGGK-VLAIDFESQCRFC-FL------PICYNIKKKYFCSLCSRRL 63 (67)
Q Consensus 22 ~Cp~CGG~-v~a~Dves~~rfC-fl------P~~~k~kr~~~Ct~C~r~L 63 (67)
.||-||+. ....|+..+---. |+ |.-.-..+-+.|..|+-..
T Consensus 14 ~C~~Cg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~ 63 (416)
T 4e2x_A 14 ACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQ 63 (416)
T ss_dssp ECTTTSCEEEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEE
T ss_pred cCCCCCCeeeeeeECCCCCccccCCChhhcCccceecceEEECCCCCcee
Confidence 59999998 2234443221111 11 2222234678899998543
No 248
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=28.38 E-value=29 Score=20.54 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCCCCCCCcceEEEE--ec---eeeeEEEeeeEeeecceEEeccccceee
Q 038108 20 PGSCPYCGGKVLAID--FE---SQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a~D--ve---s~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
+..|+.||.++...| |+ ..|. -...=|.|+.|++.|.
T Consensus 63 ~~~C~~C~~~I~~~~~~~~a~~~~~H--------~~~~CF~C~~C~~~l~ 104 (126)
T 2xqn_T 63 AVVCQGCHNAIDPEVQRVTYNNFSWH--------ASTECFLCSCCSKCLI 104 (126)
T ss_dssp CCBCTTTCSBCCTTSCEEEETTEEEE--------SSTTTSBCTTTCCBCT
T ss_pred CccCcccCCcCCcCceEEECCCCEee--------CCCCCcCcCCCCCccC
Confidence 457999999988432 21 1111 1144577888888774
No 249
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=28.35 E-value=9.6 Score=18.01 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=8.8
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2em0_A 10 EKTWKCRECDMCF 22 (46)
T ss_dssp CCCCCCSSSCCCC
T ss_pred CcCeECCCCCccc
Confidence 4567777777654
No 250
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=28.34 E-value=22 Score=24.23 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=9.2
Q ss_pred CCCCCCCCcceE
Q 038108 20 PGSCPYCGGKVL 31 (67)
Q Consensus 20 pG~Cp~CGG~v~ 31 (67)
+-.||.|||.+.
T Consensus 145 ~p~C~~Cgg~lr 156 (246)
T 1yc5_A 145 VPLCDDCNSLIR 156 (246)
T ss_dssp SCBCTTTCCBEE
T ss_pred CCCCCCCCCccC
Confidence 448999999753
No 251
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=28.32 E-value=23 Score=18.78 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=6.6
Q ss_pred EEeccccceee
Q 038108 54 YFCSLCSRRLE 64 (67)
Q Consensus 54 ~~Ct~C~r~L~ 64 (67)
+.|++|+..+.
T Consensus 10 ~~C~~C~~~i~ 20 (39)
T 2i5o_A 10 VPCEKCGSLVP 20 (39)
T ss_dssp EECTTTCCEEE
T ss_pred cccccccCcCC
Confidence 45666666553
No 252
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=28.22 E-value=15 Score=24.98 Aligned_cols=28 Identities=29% Similarity=0.689 Sum_probs=18.1
Q ss_pred CCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccce
Q 038108 19 APGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRR 62 (67)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~ 62 (67)
....|+.||+... | -.+..++|..|+..
T Consensus 9 ~~~~Cw~C~~~~~-------------~---~~~~~~fC~~c~~~ 36 (207)
T 3bvo_A 9 NYPRCWNCGGPWG-------------P---GREDRFFCPQCRAL 36 (207)
T ss_dssp --CBCSSSCCBCC-------------S---SCSCCCBCTTTCCB
T ss_pred CCCCCCCCCCCcc-------------c---cccccccccccccc
Confidence 4678999997642 1 13567788888754
No 253
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=28.20 E-value=24 Score=20.51 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=12.0
Q ss_pred ecceEEeccccceee
Q 038108 50 IKKKYFCSLCSRRLE 64 (67)
Q Consensus 50 ~kr~~~Ct~C~r~L~ 64 (67)
...+|.|+.|+.++=
T Consensus 23 ~~akY~CPrC~~rYC 37 (59)
T 1x4s_A 23 QPARYTCPRCNAPYC 37 (59)
T ss_dssp EEECEECTTTCCEES
T ss_pred CCccccCcCCCCCcc
Confidence 677899999988763
No 254
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=28.03 E-value=28 Score=21.85 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=20.8
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceeeee
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLELY 66 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~~~ 66 (67)
-.|| |||.-+...=+-.-. ..+.|+.|+..+..+
T Consensus 113 ~~Cr-CG~~f~i~~~~l~~~-----------~~v~C~sCSl~~~v~ 146 (155)
T 2l6l_A 113 LSCR-CGGKYSVSKDEAEEV-----------SLISCDTCSLIIELL 146 (155)
T ss_dssp EECS-SSCEEEEETTHHHHC-----------CEEECSSSSCEEEEE
T ss_pred EcCC-CCCeEEecHHHhCCC-----------CEEECCCCceEEEEE
Confidence 3687 998755442221110 468899999887654
No 255
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=27.89 E-value=23 Score=15.93 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=10.0
Q ss_pred cceEEecc--ccceee
Q 038108 51 KKKYFCSL--CSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~--C~r~L~ 64 (67)
.+.|.|+. |++...
T Consensus 6 ~k~~~C~~~~C~k~f~ 21 (37)
T 1va1_A 6 KKQHICHIQGCGKVYG 21 (37)
T ss_dssp CCCEECCSTTCCCEES
T ss_pred CCCCCCCCCCCCCccC
Confidence 46788885 888654
No 256
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=27.57 E-value=25 Score=21.38 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=10.3
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
++.|.|+.|++...
T Consensus 20 ek~y~C~~C~k~F~ 33 (133)
T 2lt7_A 20 RVYYICIVCKRSYV 33 (133)
T ss_dssp EEEEEETTTCCEES
T ss_pred CcCeECCCCCCCcC
Confidence 46788888887654
No 257
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=27.43 E-value=36 Score=25.49 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=14.1
Q ss_pred cCCceeeeeeecCCCCCCCCCc
Q 038108 7 CSEEERELGRQQAPGSCPYCGG 28 (67)
Q Consensus 7 cde~~kv~~~~~ApG~Cp~CGG 28 (67)
+-..+..+.-+..-|.||.||.
T Consensus 142 ~~~~~~~l~~~~v~g~cp~c~~ 163 (560)
T 3h99_A 142 DPEKGMFLPDRFVKGTCPKCKS 163 (560)
T ss_dssp ETTTTEECCGGGEEEECTTTCC
T ss_pred cCccCceecchhcCCCCCCCCC
Confidence 3344555555566688999883
No 258
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.94 E-value=25 Score=17.54 Aligned_cols=12 Identities=17% Similarity=0.675 Sum_probs=9.2
Q ss_pred eEEeccccceee
Q 038108 53 KYFCSLCSRRLE 64 (67)
Q Consensus 53 ~~~Ct~C~r~L~ 64 (67)
+|.|+.|..++-
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 688888887764
No 259
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=26.90 E-value=23 Score=24.26 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.4
Q ss_pred CCCCCCCCcceE
Q 038108 20 PGSCPYCGGKVL 31 (67)
Q Consensus 20 pG~Cp~CGG~v~ 31 (67)
+-.||.|||.+.
T Consensus 142 ~p~C~~Cgg~lr 153 (249)
T 1m2k_A 142 LPKCDKCGSLLR 153 (249)
T ss_dssp CCBCSSSSSBEE
T ss_pred CCCCCCCCCCcC
Confidence 458999999763
No 260
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.88 E-value=22 Score=18.56 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=9.1
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 13 ~k~~~C~~C~~~f~ 26 (86)
T 1x6h_A 13 EKPYACSHCDKTFR 26 (86)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCCcCCCCCCccC
Confidence 35677777777653
No 261
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.68 E-value=25 Score=24.06 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=12.8
Q ss_pred ecceEEeccccceeee
Q 038108 50 IKKKYFCSLCSRRLEL 65 (67)
Q Consensus 50 ~kr~~~Ct~C~r~L~~ 65 (67)
.+.-+.|+.|||.|+.
T Consensus 219 ~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 219 SGDMITCPYCGRILYA 234 (256)
T ss_dssp SSSCEECTTTCCEEEC
T ss_pred CCCEEECCCCCeeEEe
Confidence 3456999999999874
No 262
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=26.45 E-value=26 Score=23.22 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=11.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.++++|+.||..|-
T Consensus 96 ~~r~FC~~CGs~l~ 109 (196)
T 1x6m_A 96 IQRHRCRDCGVHMY 109 (196)
T ss_dssp EEEEEETTTCCEEE
T ss_pred eeeEECCCCCCcCC
Confidence 47899999999873
No 263
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=26.24 E-value=20 Score=25.79 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=19.2
Q ss_pred eeeeecCCCCCC--CCCcceEEEEeceeeeEEEeeeEeeecceEEeccccce
Q 038108 13 ELGRQQAPGSCP--YCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRR 62 (67)
Q Consensus 13 v~~~~~ApG~Cp--~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~ 62 (67)
|-++..-| |+ +||+.|.-+.+. ....|+|+.|-+.
T Consensus 242 vygR~g~p--C~~~~CG~~I~~~~~~-------------gR~t~~CP~CQ~~ 278 (310)
T 3twl_A 242 FHNREKKP--GKAFVDGKKIDFITAG-------------GRTTAYVPELQKL 278 (310)
T ss_dssp GGGTTSCT--TSCEETTEECEECCE-------------------ECTTTCCC
T ss_pred EeCcCCCC--CCCCCCCCeEEEEEEC-------------CcccEECCCCcCC
Confidence 33443334 66 999998766554 3567788888653
No 264
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.79 E-value=24 Score=19.70 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=10.8
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 17 ~~~~~C~~C~k~f~ 30 (115)
T 2dmi_A 17 ASKFRCKDCSAAYD 30 (115)
T ss_dssp CCSEEBSSSSCEES
T ss_pred CCCEECCccCchhc
Confidence 46788999988754
No 265
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.78 E-value=12 Score=16.08 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=8.4
Q ss_pred ceEEec--cccceee
Q 038108 52 KKYFCS--LCSRRLE 64 (67)
Q Consensus 52 r~~~Ct--~C~r~L~ 64 (67)
+.|.|+ .|++...
T Consensus 2 k~~~C~~~~C~k~f~ 16 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFV 16 (32)
T ss_dssp CSBCCCCTTCCCCBS
T ss_pred CCCcCcCCCCCCccC
Confidence 456777 7777543
No 266
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=25.65 E-value=26 Score=24.49 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=8.9
Q ss_pred CCCCCCCCcce
Q 038108 20 PGSCPYCGGKV 30 (67)
Q Consensus 20 pG~Cp~CGG~v 30 (67)
.-.||.|||.+
T Consensus 163 ~P~C~~Cgg~l 173 (289)
T 1q1a_A 163 FVKCDVCGELV 173 (289)
T ss_dssp CCBCTTTCCBE
T ss_pred CccCCCCCCEE
Confidence 45899999965
No 267
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.61 E-value=10 Score=20.36 Aligned_cols=38 Identities=16% Similarity=0.467 Sum_probs=22.5
Q ss_pred CCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 20 PGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
...|+.||-.|.+-.|+ .+--.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~------a~~~~~-H~~CF~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGIT------YQDQPW-HADCFVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCEE------ETTEEE-CTTTTBCTTTCCBCT
T ss_pred cCCCcccCCEeCcceEE------ECcccc-ccCcCEECCCCCCCC
Confidence 35799999988531111 112122 334577999988874
No 268
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.18 E-value=8 Score=18.40 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=8.3
Q ss_pred cceEEecccccee
Q 038108 51 KKKYFCSLCSRRL 63 (67)
Q Consensus 51 kr~~~Ct~C~r~L 63 (67)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytt_A 10 EKPYQCSECGKSF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CCCeeCCCCCccc
Confidence 3556777777654
No 269
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.15 E-value=24 Score=18.39 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=24.0
Q ss_pred cCCCCCCCCCcceE-EEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 18 QAPGSCPYCGGKVL-AIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~-a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
.-|-.|+.||-... ..++....+. ....+.|.|..|++...
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~------h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRT------HTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTT------TCCSCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHHHHHHHHHH------cCCCcCeeCCCCCCccC
Confidence 34667999986543 1222222221 22356799999998764
No 270
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=24.96 E-value=29 Score=23.30 Aligned_cols=28 Identities=25% Similarity=0.606 Sum_probs=18.9
Q ss_pred CCCCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccce
Q 038108 19 APGSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRR 62 (67)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~ 62 (67)
..-+||.|.-+|. |... ..|.|..|++.
T Consensus 41 ~Y~ACp~CnKKV~--~~~~--------------g~~~CekC~~~ 68 (172)
T 3u50_C 41 YYYRCTCQGKSVL--KYHG--------------DSFFCESCQQF 68 (172)
T ss_dssp EEEECTTSCCCEE--EETT--------------TEEEETTTTEE
T ss_pred EehhchhhCCEee--eCCC--------------CeEECCCCCCC
Confidence 3567888888876 2222 46778888875
No 271
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=24.70 E-value=25 Score=18.48 Aligned_cols=14 Identities=29% Similarity=1.016 Sum_probs=10.4
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 60 ~~~~~C~~C~~~f~ 73 (90)
T 1a1h_A 60 EKPFACDICGRKFA 73 (90)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCccCCCCCchhC
Confidence 45688888887654
No 272
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.70 E-value=14 Score=21.95 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=23.6
Q ss_pred CCCCCCCCcceEEEEeceeeeEEEeeeEeee--cceEEeccccceee
Q 038108 20 PGSCPYCGGKVLAIDFESQCRFCFLPICYNI--KKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~--kr~~~Ct~C~r~L~ 64 (67)
...|+.||-+|....+ |-.--++ ..=|.|+.|++.|.
T Consensus 3 ~~~C~~C~~~I~~~~~--------~~a~~~~wH~~CF~C~~C~~~L~ 41 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYF--------LKAIDQYWHEDCLSCDLCGCRLG 41 (114)
T ss_dssp CBCBSSSCSCBCSSEE--------EECSSSEECTTTCCCSSSCSCCC
T ss_pred CCCCcCCCCeeCCcEE--------EEECchhHHHhcCcccccCCchh
Confidence 4579999998873321 1111222 34588999999985
No 273
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=24.20 E-value=27 Score=18.08 Aligned_cols=15 Identities=20% Similarity=0.674 Sum_probs=11.9
Q ss_pred cceEEeccccceeee
Q 038108 51 KKKYFCSLCSRRLEL 65 (67)
Q Consensus 51 kr~~~Ct~C~r~L~~ 65 (67)
+--|.|+.|-+.|.+
T Consensus 3 ~EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 3 SEGFICPQCMKSLGS 17 (34)
T ss_dssp SEEEECTTTCCEESS
T ss_pred CcccCCcHHHHHcCC
Confidence 456899999888865
No 274
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.94 E-value=9 Score=24.29 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=9.8
Q ss_pred eeecCCCCCCCCCcceEE
Q 038108 15 GRQQAPGSCPYCGGKVLA 32 (67)
Q Consensus 15 ~~~~ApG~Cp~CGG~v~a 32 (67)
|+.+....|..||..|..
T Consensus 1 ~~~~~~~~C~~C~~~I~~ 18 (169)
T 2rgt_A 1 GSTPEIPMCAGCDQHILD 18 (169)
T ss_dssp ------CBBSSSSSBCCS
T ss_pred CCCCCCCccccCCCccCC
Confidence 345566789999988863
No 275
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=23.58 E-value=63 Score=21.11 Aligned_cols=17 Identities=41% Similarity=0.962 Sum_probs=13.3
Q ss_pred CCCCCCCCCcceEEEEe
Q 038108 19 APGSCPYCGGKVLAIDF 35 (67)
Q Consensus 19 ApG~Cp~CGG~v~a~Dv 35 (67)
..+.||.||+....++-
T Consensus 102 ~~~~c~~~g~~~~~~e~ 118 (166)
T 3ir9_A 102 AAGNCPKCGSSLEVTDV 118 (166)
T ss_dssp CCCBCTTTCCBEEEEEE
T ss_pred ccccccccCccchhhhH
Confidence 45689999999877653
No 276
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=23.11 E-value=13 Score=22.29 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=13.5
Q ss_pred eeeeeecCCCCCCCCCc
Q 038108 12 RELGRQQAPGSCPYCGG 28 (67)
Q Consensus 12 kv~~~~~ApG~Cp~CGG 28 (67)
|+.-+|.+.-.||.||.
T Consensus 19 kie~~q~~ky~C~fCgk 35 (73)
T 1ffk_W 19 DVEIKHKKKYKCPVCGF 35 (73)
T ss_pred HHHHhcccCccCCCCCC
Confidence 34467899999999986
No 277
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=23.09 E-value=28 Score=17.84 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=10.0
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|..|++...
T Consensus 55 ~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 55 EKPHKCQVCGKAFS 68 (82)
T ss_dssp CCCEECTTTSCEES
T ss_pred CCCCcCCCcchhhC
Confidence 45688888887654
No 278
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=22.82 E-value=53 Score=23.28 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=19.6
Q ss_pred CCCCCCcc--eEEEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 22 SCPYCGGK--VLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 22 ~Cp~CGG~--v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
.||.||+. -.+.|-++.-. +|+.||-.|.
T Consensus 23 ~CPECGs~~t~IV~D~erGE~--------------VCsdCGLVLE 53 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDV--------------VCALCGLVLS 53 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEE--------------EETTTCBBCC
T ss_pred ECcCCCCcCCeEEEeCCCCEE--------------EEcCCCCCcC
Confidence 79999993 35667666544 5577776553
No 279
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.69 E-value=32 Score=16.93 Aligned_cols=15 Identities=13% Similarity=0.188 Sum_probs=11.2
Q ss_pred ecceEEecc--ccceee
Q 038108 50 IKKKYFCSL--CSRRLE 64 (67)
Q Consensus 50 ~kr~~~Ct~--C~r~L~ 64 (67)
..+.|.|+. |++...
T Consensus 6 gekp~~C~~~~C~k~F~ 22 (38)
T 2eln_A 6 SGILLKCPTDGCDYSTP 22 (38)
T ss_dssp CCCCEECSSSSCCCEES
T ss_pred CCCCCCCCCCCCCCccC
Confidence 457899986 998754
No 280
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.62 E-value=22 Score=18.70 Aligned_cols=19 Identities=32% Similarity=0.826 Sum_probs=14.0
Q ss_pred CCCCCCCCCcceEEEEece
Q 038108 19 APGSCPYCGGKVLAIDFES 37 (67)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves 37 (67)
.+..||.|+..+..-|+..
T Consensus 42 ~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 42 GAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TSSSCTTTCCCCSSCCCEE
T ss_pred CCCcCCCCCCcccccccee
Confidence 3568999999887666544
No 281
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=22.52 E-value=23 Score=22.55 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=11.4
Q ss_pred CCCCCCCcceEEEE
Q 038108 21 GSCPYCGGKVLAID 34 (67)
Q Consensus 21 G~Cp~CGG~v~a~D 34 (67)
=.||+||-.|+|.-
T Consensus 71 ~~C~nC~R~vaa~R 84 (99)
T 3mhs_C 71 IHCENCGRDVSANR 84 (99)
T ss_dssp EECTTTCCEEEGGG
T ss_pred EECCCCCCCchhhh
Confidence 46999999998753
No 282
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=22.49 E-value=28 Score=22.30 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=8.0
Q ss_pred cceEEeccccce
Q 038108 51 KKKYFCSLCSRR 62 (67)
Q Consensus 51 kr~~~Ct~C~r~ 62 (67)
..+|.|++||+.
T Consensus 34 ~aky~CpfCgk~ 45 (103)
T 4a17_Y 34 HAKYGCPFCGKV 45 (103)
T ss_dssp HSCEECTTTCCE
T ss_pred hcCCCCCCCCCc
Confidence 356777777754
No 283
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=22.40 E-value=16 Score=20.03 Aligned_cols=14 Identities=36% Similarity=1.092 Sum_probs=7.0
Q ss_pred ecceEEecccccee
Q 038108 50 IKKKYFCSLCSRRL 63 (67)
Q Consensus 50 ~kr~~~Ct~C~r~L 63 (67)
.++.|.|..|++..
T Consensus 14 ~~~~~~C~~C~~~f 27 (106)
T 2ee8_A 14 TKKEFICKFCGRHF 27 (106)
T ss_dssp CCCCCBCSSSCCBC
T ss_pred CCcCeECCCCCCcc
Confidence 34445555555543
No 284
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=22.40 E-value=30 Score=18.12 Aligned_cols=14 Identities=21% Similarity=0.788 Sum_probs=10.0
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 63 ~~~~~C~~C~~~f~ 76 (89)
T 2wbs_A 63 HRPFQCQKCDRAFS 76 (89)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCcccC
Confidence 45688888887654
No 285
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=22.22 E-value=27 Score=20.43 Aligned_cols=14 Identities=43% Similarity=0.866 Sum_probs=10.0
Q ss_pred CCCCCCCCCcceEE
Q 038108 19 APGSCPYCGGKVLA 32 (67)
Q Consensus 19 ApG~Cp~CGG~v~a 32 (67)
..|.||||=-...+
T Consensus 27 p~gqCPYC~~~~e~ 40 (57)
T 2k9h_A 27 INGQCPYCMTITEA 40 (57)
T ss_dssp TTTBCTTTCCBCCS
T ss_pred CCCCCCcccCcCCc
Confidence 46899999665443
No 286
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=21.83 E-value=15 Score=18.56 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=14.1
Q ss_pred EEcCCceeeeeeecCC--CCCCCCCc
Q 038108 5 YVCSEEERELGRQQAP--GSCPYCGG 28 (67)
Q Consensus 5 ~vcde~~kv~~~~~Ap--G~Cp~CGG 28 (67)
|-|++.+-+.+.=++| ..|-+||.
T Consensus 4 ~~Cg~~GH~a~~C~~~~~~~C~~Cg~ 29 (39)
T 2a51_A 4 FNCGKPGHTARMCRQPRQEGCWNCGS 29 (39)
T ss_dssp TTTCCBSSCTTTCCSCCCSSCTTTCC
T ss_pred eccCCCCcccccCCCCCCCccccCCC
Confidence 4455555555544444 67888874
No 287
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.76 E-value=31 Score=20.47 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=11.5
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.||+...
T Consensus 48 ekpf~C~~Cgk~F~ 61 (102)
T 2ghf_A 48 NSSYVCVECNFLTK 61 (102)
T ss_dssp SCCEEETTTTEEES
T ss_pred CCCcCCCCCCcccC
Confidence 56799999998764
No 288
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=21.42 E-value=45 Score=22.78 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=7.5
Q ss_pred CCCCCCCcc
Q 038108 21 GSCPYCGGK 29 (67)
Q Consensus 21 G~Cp~CGG~ 29 (67)
-.||.|||+
T Consensus 148 p~C~~Cgg~ 156 (253)
T 1ma3_A 148 PRCRKCGSY 156 (253)
T ss_dssp CCCTTTCCS
T ss_pred CCCCCCCCc
Confidence 489999993
No 289
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.39 E-value=33 Score=18.29 Aligned_cols=14 Identities=14% Similarity=0.652 Sum_probs=8.9
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.+.|.|+.|++...
T Consensus 62 ~~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 62 ERPFKCQICPYASR 75 (96)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCCccC
Confidence 45577777776543
No 290
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=21.34 E-value=21 Score=21.94 Aligned_cols=8 Identities=50% Similarity=1.622 Sum_probs=6.5
Q ss_pred CCCCCCcc
Q 038108 22 SCPYCGGK 29 (67)
Q Consensus 22 ~Cp~CGG~ 29 (67)
.||+||..
T Consensus 37 ~CPnCgs~ 44 (81)
T 3p8b_A 37 RCPVCGSR 44 (81)
T ss_dssp SCTTTCCC
T ss_pred CCCCCCCC
Confidence 59999973
No 291
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.17 E-value=20 Score=19.18 Aligned_cols=38 Identities=18% Similarity=0.443 Sum_probs=21.7
Q ss_pred CCCCCCCcceEEEEeceeeeEEEeeeEeeecceEEeccccceeee
Q 038108 21 GSCPYCGGKVLAIDFESQCRFCFLPICYNIKKKYFCSLCSRRLEL 65 (67)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~~ 65 (67)
..|+.||..|... + +=.+--.| +..=|.|+.|++.|..
T Consensus 6 ~~C~~C~~~I~~~-~-----~~a~~~~~-H~~CF~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIGR-V-----IKAMNNSW-HPECFRCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCSC-C-----EEETTEEE-CTTTSBCSSSCCBCSS
T ss_pred CcCccCCCEecce-E-----EEECcccc-cccCCEeCCCCCcCCC
Confidence 4799999888621 1 10111111 3344788888888753
No 292
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=21.05 E-value=36 Score=25.08 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=9.3
Q ss_pred CCCCCCCCcceE
Q 038108 20 PGSCPYCGGKVL 31 (67)
Q Consensus 20 pG~Cp~CGG~v~ 31 (67)
+-.||.|||.+.
T Consensus 171 ~P~Cp~Cgg~lr 182 (361)
T 1q14_A 171 FVKCDVCGELVK 182 (361)
T ss_dssp CCBCTTTCCBEE
T ss_pred CCCCcCCCCEeC
Confidence 358999999753
No 293
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.91 E-value=35 Score=19.57 Aligned_cols=38 Identities=21% Similarity=0.491 Sum_probs=21.2
Q ss_pred CCCCCCCcceE-EEEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 21 GSCPYCGGKVL-AIDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 21 G~Cp~CGG~v~-a~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
-.|+.||-.-. ..+++...|. ....+.|.|..|++...
T Consensus 29 h~C~~Cgk~F~~~~~L~~H~~~------H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQERHLRL------LHAAQVFPCKYCPATFY 67 (85)
T ss_dssp EECTTSCCEESSHHHHHHHHHT------TSCSSSEECTTSSCEES
T ss_pred EECCCCCCCcCcHHHHhhhhhh------ccCCCccCCCCCCCEeC
Confidence 36888885432 2223322221 12346799999998754
No 294
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=20.64 E-value=28 Score=27.35 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=12.7
Q ss_pred eeecCCCCCCCCC-cceEE
Q 038108 15 GRQQAPGSCPYCG-GKVLA 32 (67)
Q Consensus 15 ~~~~ApG~Cp~CG-G~v~a 32 (67)
.+....|.||.|| |.+..
T Consensus 567 ~k~g~~G~CP~Cg~g~l~~ 585 (633)
T 2gai_A 567 LSFGKYGFYLKCECGKTRS 585 (633)
T ss_dssp EEEETTEEEEECSSSCCEE
T ss_pred ecccccccCcccCCCccee
Confidence 3445678899999 77654
No 295
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=20.42 E-value=17 Score=21.66 Aligned_cols=11 Identities=45% Similarity=1.123 Sum_probs=8.9
Q ss_pred CCCCCCCcceE
Q 038108 21 GSCPYCGGKVL 31 (67)
Q Consensus 21 G~Cp~CGG~v~ 31 (67)
-.||.||.++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 46999998875
No 296
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=20.41 E-value=14 Score=23.24 Aligned_cols=38 Identities=16% Similarity=0.478 Sum_probs=25.4
Q ss_pred CCCCCCCCcceEEEEeceee-eEEEeeeEeeecceEEeccccceee
Q 038108 20 PGSCPYCGGKVLAIDFESQC-RFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~-rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
+-.||.||-.+.-.|++... .-| -.|...|..|+..+.
T Consensus 110 ~v~C~~C~~~~~r~~l~~H~~~~C-------~~r~~~C~~C~~~~~ 148 (170)
T 3hcs_A 110 LMDCPQCQRPFQKFHINIHILKDC-------PRRQVSCDNCAASMA 148 (170)
T ss_dssp EEECTTTCCEEEGGGHHHHHHHTC-------TTCEEECTTTCCEEE
T ss_pred eeECCCCChHHHHHHHHHHhhhhC-------CCCCeECCCCCCccC
Confidence 34577788777777776665 344 346777888887654
No 297
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.40 E-value=35 Score=18.15 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=21.6
Q ss_pred CCCCCCCCCcceEE-EEeceeeeEEEeeeEeeecceEEeccccceee
Q 038108 19 APGSCPYCGGKVLA-IDFESQCRFCFLPICYNIKKKYFCSLCSRRLE 64 (67)
Q Consensus 19 ApG~Cp~CGG~v~a-~Dves~~rfCflP~~~k~kr~~~Ct~C~r~L~ 64 (67)
.+-.|+.||-...- .++....+. ....+.|.|+.|++...
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~------h~~~~~~~C~~C~~~f~ 46 (95)
T 2yt9_A 6 SGVACEICGKIFRDVYHLNRHKLS------HSGEKPYSCPVCGLRFK 46 (95)
T ss_dssp SCEECSSSCCEESSSHHHHHHHHH------SCSSCSEECSSSCCEES
T ss_pred CCeECCCCCCccCChHHHHHHHHh------cCCCCCCcCCCCCCccC
Confidence 34567888754421 122222110 12346799999998764
No 298
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=20.39 E-value=32 Score=19.60 Aligned_cols=14 Identities=21% Similarity=0.705 Sum_probs=10.0
Q ss_pred cceEEeccccceee
Q 038108 51 KKKYFCSLCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct~C~r~L~ 64 (67)
.++|.|..|++...
T Consensus 72 ~~~~~C~~C~k~f~ 85 (129)
T 2wbt_A 72 ISQFVCPLCLMPFS 85 (129)
T ss_dssp HCSEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 35788888887654
No 299
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=20.18 E-value=43 Score=26.93 Aligned_cols=15 Identities=40% Similarity=0.877 Sum_probs=12.6
Q ss_pred cCCCCCCCCCcceEE
Q 038108 18 QAPGSCPYCGGKVLA 32 (67)
Q Consensus 18 ~ApG~Cp~CGG~v~a 32 (67)
..|-.||.||..+.-
T Consensus 403 ~~P~~CP~Cgs~l~~ 417 (671)
T 2owo_A 403 VFPTHCPVCGSDVER 417 (671)
T ss_dssp CCCSBCTTTCCBEEE
T ss_pred cCCCCCCCCCCEeEE
Confidence 478999999998863
No 300
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=20.13 E-value=39 Score=24.31 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=8.8
Q ss_pred CCCCCCCCcce
Q 038108 20 PGSCPYCGGKV 30 (67)
Q Consensus 20 pG~Cp~CGG~v 30 (67)
.-.||.|||.+
T Consensus 185 ~P~C~~Cgg~l 195 (323)
T 1j8f_A 185 TPKCEDCQSLV 195 (323)
T ss_dssp CCBCTTTCCBE
T ss_pred CCCCcCCCCcc
Confidence 34899999965
No 301
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.07 E-value=37 Score=14.99 Aligned_cols=14 Identities=29% Similarity=0.923 Sum_probs=10.0
Q ss_pred cceEEec--cccceee
Q 038108 51 KKKYFCS--LCSRRLE 64 (67)
Q Consensus 51 kr~~~Ct--~C~r~L~ 64 (67)
.+.|.|. .|++...
T Consensus 4 ~k~~~C~~~~C~k~f~ 19 (38)
T 1bhi_A 4 DKPFLCTAPGCGQRFT 19 (38)
T ss_dssp CCCEECCCTTTCCEES
T ss_pred CcceECCCCCCCcccC
Confidence 3568898 4988754
Done!