BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038109
         (324 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255542538|ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548293|gb|EEF49784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 619

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/330 (64%), Positives = 252/330 (76%), Gaps = 6/330 (1%)

Query: 1   MSLLRKLPTKFLIPQSVL--VTRSFT----KSGAFPDEPTSAYYDDLVNAAGHERDLETV 54
           +   RKL    L  QS+L   TR FT    K  +FPD+PT+AYYD LVNAAGHERD +T+
Sbjct: 287 LPFFRKLHHMPLNSQSILSLTTRCFTTQNDKLNSFPDKPTAAYYDGLVNAAGHERDFKTL 346

Query: 55  RYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLC 114
            +LLNKR RD CFNT NTF FITNT+NSLSVL DL +TLARLDKG PR SAY+ LI RLC
Sbjct: 347 HHLLNKRVRDHCFNTTNTFKFITNTDNSLSVLDDLIQTLARLDKGIPRMSAYNMLIARLC 406

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           KL +I E+L +V IMA+  +GLS  +FHPILS LT+ K+ME++W ++E+M+ I V PDLT
Sbjct: 407 KLDRIQESLHIVHIMADEQYGLSTCSFHPILSSLTQKKKMEDSWKVIEMMRAIGVLPDLT 466

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           A+NYLLTAYC+ GNL     V+K++EEE LGADARTYDALVLGACR G+VE A V+LRRM
Sbjct: 467 AFNYLLTAYCYNGNLVDACKVMKRIEEEGLGADARTYDALVLGACRTGKVEAALVVLRRM 526

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           VDDG  VLYST+ HV+ ALLRLG Y QA KFVM+ GGRDI  DTE+FG L SKLI LERF
Sbjct: 527 VDDGVHVLYSTHVHVINALLRLGCYVQATKFVMIFGGRDIAFDTEIFGILASKLIKLERF 586

Query: 295 NEANFILKEMNKRDLKMGFKLRDYYEINVK 324
            EA  +LKEM +R L MG KLRDY  +NVK
Sbjct: 587 EEAKLVLKEMEERGLVMGDKLRDYCYVNVK 616


>gi|147805136|emb|CAN73347.1| hypothetical protein VITISV_037919 [Vitis vinifera]
          Length = 330

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/328 (60%), Positives = 250/328 (76%), Gaps = 7/328 (2%)

Query: 1   MSLLRKLPTKFLIPQSVLV----TRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRY 56
           MS+LRKL  K   P S  +    +R F      P EPT AYYD+L+N AG  RD  +V  
Sbjct: 1   MSILRKLARKN--PNSPFLLCNTSRFFNTQNPNPYEPTVAYYDNLINTAGRNRDFASVCN 58

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKL 116
           LLNKR RD CFNT +TF+FITNT+  LSVL +L + LA LDKGF RKSAYD+LI RLC+L
Sbjct: 59  LLNKRVRDGCFNTNHTFDFITNTDAGLSVLDELSQALAHLDKGFXRKSAYDSLIARLCRL 118

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
           K++DE+LR+VD M +   G++A TFHPIL+VLTR ++MEEAW +M +M+E  VSPD+TAY
Sbjct: 119 KRVDESLRLVDTMVQSDHGVNACTFHPILNVLTRKRKMEEAWRVMTIMRESGVSPDVTAY 178

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           NYLLTAYCF GNL A  GVL +MEEE + ADARTYDALVLGAC+AG+VE A V+LRRM D
Sbjct: 179 NYLLTAYCFTGNLEAAVGVLTEMEEEGMAADARTYDALVLGACKAGKVEGAMVVLRRMED 238

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
           DG  +LYST+AHV+  LL+LGYYAQAV+FVM+CGG+D KLD E FG LGS+LI L+RF E
Sbjct: 239 DGVPILYSTHAHVINGLLKLGYYAQAVEFVMICGGKDKKLDEESFGILGSRLINLKRFEE 298

Query: 297 ANFILKEMNKRDLKM-GFKLRDYYEINV 323
           A  +LKEM +R + M   +L+D+YE+++
Sbjct: 299 AKLVLKEMRRRGIVMRSNELQDFYELHI 326


>gi|359486490|ref|XP_002272959.2| PREDICTED: uncharacterized protein LOC100251820 [Vitis vinifera]
          Length = 613

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/301 (63%), Positives = 231/301 (76%), Gaps = 6/301 (1%)

Query: 1   MSLLRKLPTKFLIPQSVLV----TRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRY 56
           MS+LRKL  K   P S  +    +R F      P EPT AYYD+L+N AG  RD  +V  
Sbjct: 1   MSILRKLARKN--PNSPFLLCNTSRFFNTQNPNPYEPTVAYYDNLINTAGRNRDFASVCN 58

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKL 116
           LLNKR RD CFNT +TF+FITNT+  LSVL +L + LA LDKGF RKSAYD+LI RLC+L
Sbjct: 59  LLNKRVRDGCFNTNHTFDFITNTDAGLSVLDELSQALAHLDKGFLRKSAYDSLIARLCRL 118

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
           K++DE+LR+VD M +   G++A TFHPIL+VLTR ++MEEAW +M +M+E  VSPD+TAY
Sbjct: 119 KRVDESLRLVDTMVQSDHGVNACTFHPILNVLTRKRKMEEAWRVMTIMRESGVSPDVTAY 178

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           NYLLTAYCF GNL A  GVL +MEEE + ADARTYDALVLGAC+AG+VE A V+LRRM D
Sbjct: 179 NYLLTAYCFTGNLEAAVGVLTEMEEEGMAADARTYDALVLGACKAGKVEGAMVVLRRMED 238

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
           DG  +LYST+AHV+  LL+LGYYAQAV+FVM+CGG+D KLD E FG LGS+LI L+RF E
Sbjct: 239 DGVPILYSTHAHVINGLLKLGYYAQAVEFVMICGGKDKKLDEESFGILGSRLINLKRFEE 298

Query: 297 A 297
           A
Sbjct: 299 A 299


>gi|297736579|emb|CBI25450.3| unnamed protein product [Vitis vinifera]
          Length = 527

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/300 (62%), Positives = 229/300 (76%), Gaps = 6/300 (2%)

Query: 1   MSLLRKLPTKFLIPQSVLV----TRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRY 56
           MS+LRKL  K   P S  +    +R F      P EPT AYYD+L+N AG  RD  +V  
Sbjct: 1   MSILRKLARKN--PNSPFLLCNTSRFFNTQNPNPYEPTVAYYDNLINTAGRNRDFASVCN 58

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKL 116
           LLNKR RD CFNT +TF+FITNT+  LSVL +L + LA LDKGF RKSAYD+LI RLC+L
Sbjct: 59  LLNKRVRDGCFNTNHTFDFITNTDAGLSVLDELSQALAHLDKGFLRKSAYDSLIARLCRL 118

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
           K++DE+LR+VD M +   G++A TFHPIL+VLTR ++MEEAW +M +M+E  VSPD+TAY
Sbjct: 119 KRVDESLRLVDTMVQSDHGVNACTFHPILNVLTRKRKMEEAWRVMTIMRESGVSPDVTAY 178

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           NYLLTAYCF GNL A  GVL +MEEE + ADARTYDALVLGAC+AG+VE A V+LRRM D
Sbjct: 179 NYLLTAYCFTGNLEAAVGVLTEMEEEGMAADARTYDALVLGACKAGKVEGAMVVLRRMED 238

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
           DG  +LYST+AHV+  LL+LGYYAQAV+FVM+CGG+D KLD E FG LGS+LI L+R  E
Sbjct: 239 DGVPILYSTHAHVINGLLKLGYYAQAVEFVMICGGKDKKLDEESFGILGSRLINLKRTME 298


>gi|145339555|ref|NP_191162.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546756|sp|Q9LY43.2|PP283_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56030
 gi|332645947|gb|AEE79468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 351

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/335 (49%), Positives = 227/335 (67%), Gaps = 14/335 (4%)

Query: 1   MSLLRKL-----PTKFLIPQSVLVTRSFT----KSGAFPDEPTSAYYDDLVNAAGHERDL 51
           MSLLR+       ++FL+ QS+   RSF+       A P   T   +D+L+  AG   D 
Sbjct: 16  MSLLRRFVKEANNSRFLL-QSI-SGRSFSTVNPNPTASPGRRTCVEFDNLIFKAGSSGDF 73

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIG 111
           E VR LLN R  + CFNT  TF F+TNT++  S L DL R L + D G+ RK +Y+TLI 
Sbjct: 74  EAVRRLLNSRVVNACFNTTATFKFLTNTDSYSSSLEDLRRILPQTDAGYTRKHSYETLIA 133

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           RLCKL +ID+AL +++ MA G FGLS   FHPIL+ LT+  R+EEAW ++E+M+   +  
Sbjct: 134 RLCKLGRIDDALVLINDMAIGEFGLSTCVFHPILNTLTKKNRIEEAWRVVELMRSHAIPV 193

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA---DARTYDALVLGACRAGRVEEAF 228
           D+T+YNY LT++C+ G++   S VL+KMEEE+ G    D RTYDALVLGAC++GRVE A 
Sbjct: 194 DVTSYNYFLTSHCYDGDVAEASRVLRKMEEEEEGVMSPDTRTYDALVLGACKSGRVEAAM 253

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            +LRRM ++G SVLY+T+AHV+G ++  GYYA +V+FVM   G+D +LD E  GSL SKL
Sbjct: 254 AILRRMEEEGLSVLYATHAHVIGEMVESGYYALSVEFVMAYAGKDKRLDEENLGSLASKL 313

Query: 289 IGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
           I  +RF EA  +LKEM+ R L+MG  LR+++E NV
Sbjct: 314 IKRKRFKEAKMVLKEMSVRGLRMGDALREFHEKNV 348


>gi|7573498|emb|CAB87857.1| putative protein [Arabidopsis thaliana]
 gi|26450191|dbj|BAC42214.1| unknown protein [Arabidopsis thaliana]
 gi|114050667|gb|ABI49483.1| At3g56030 [Arabidopsis thaliana]
          Length = 336

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/335 (49%), Positives = 227/335 (67%), Gaps = 14/335 (4%)

Query: 1   MSLLRKL-----PTKFLIPQSVLVTRSFT----KSGAFPDEPTSAYYDDLVNAAGHERDL 51
           MSLLR+       ++FL+ QS+   RSF+       A P   T   +D+L+  AG   D 
Sbjct: 1   MSLLRRFVKEANNSRFLL-QSI-SGRSFSTVNPNPTASPGRRTCVEFDNLIFKAGSSGDF 58

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIG 111
           E VR LLN R  + CFNT  TF F+TNT++  S L DL R L + D G+ RK +Y+TLI 
Sbjct: 59  EAVRRLLNSRVVNACFNTTATFKFLTNTDSYSSSLEDLRRILPQTDAGYTRKHSYETLIA 118

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           RLCKL +ID+AL +++ MA G FGLS   FHPIL+ LT+  R+EEAW ++E+M+   +  
Sbjct: 119 RLCKLGRIDDALVLINDMAIGEFGLSTCVFHPILNTLTKKNRIEEAWRVVELMRSHAIPV 178

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA---DARTYDALVLGACRAGRVEEAF 228
           D+T+YNY LT++C+ G++   S VL+KMEEE+ G    D RTYDALVLGAC++GRVE A 
Sbjct: 179 DVTSYNYFLTSHCYDGDVAEASRVLRKMEEEEEGVMSPDTRTYDALVLGACKSGRVEAAM 238

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            +LRRM ++G SVLY+T+AHV+G ++  GYYA +V+FVM   G+D +LD E  GSL SKL
Sbjct: 239 AILRRMEEEGLSVLYATHAHVIGEMVESGYYALSVEFVMAYAGKDKRLDEENLGSLASKL 298

Query: 289 IGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
           I  +RF EA  +LKEM+ R L+MG  LR+++E NV
Sbjct: 299 IKRKRFKEAKMVLKEMSVRGLRMGDALREFHEKNV 333


>gi|15225665|ref|NP_181553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75265350|sp|Q9S733.1|PP196_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g40240, mitochondrial; Flags: Precursor
 gi|4587998|gb|AAD25939.1|AF085279_12 hypothetical protein [Arabidopsis thaliana]
 gi|4586041|gb|AAD25659.1| hypothetical protein [Arabidopsis thaliana]
 gi|28393486|gb|AAO42164.1| unknown protein [Arabidopsis thaliana]
 gi|28973567|gb|AAO64108.1| unknown protein [Arabidopsis thaliana]
 gi|110737021|dbj|BAF00465.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254707|gb|AEC09801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 351

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/328 (49%), Positives = 218/328 (66%), Gaps = 4/328 (1%)

Query: 1   MSLLR----KLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRY 56
           MSLLR    K     +    +L  RSF+     P    +  +D L+N AG   D ETVR 
Sbjct: 1   MSLLRRRFVKQSVNCITFLQILAERSFSTVKIPPGRRKTTEFDKLINEAGSSGDFETVRR 60

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKL 116
           LLN R     FNT++TF F+TNT +  S L DL R L ++D GF RK+AYD LI RLCKL
Sbjct: 61  LLNNRIVLGSFNTSDTFKFLTNTASYSSYLEDLRRVLPQIDGGFSRKNAYDILISRLCKL 120

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
            +ID+AL V+  M+ G  GL+  T+HPIL  LTR  ++EEAW ++E M+   VS D+TAY
Sbjct: 121 GRIDDALIVIGDMSNGRLGLTPSTYHPILCSLTRKYKIEEAWRVVESMRSKSVSMDVTAY 180

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           NY LT++C+ G L + S V++K+EE+    D+R+YDALVLGACRAG+VE A  +LRRM +
Sbjct: 181 NYFLTSHCYDGELESASEVMRKIEEDGNSPDSRSYDALVLGACRAGKVEAAMAILRRMEE 240

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
           DG +VLYST+AHV+  L+  GYYA  ++FVM   G+D++LD+E FG L  KL+  +R+ E
Sbjct: 241 DGVTVLYSTHAHVITGLVEGGYYALGLEFVMAYAGKDLRLDSESFGFLAGKLVKRKRYEE 300

Query: 297 ANFILKEMNKRDLKMGFKLRDYYEINVK 324
           A  ++KEM  R L+MG +LR +YE NV+
Sbjct: 301 AMIVVKEMVMRGLRMGDELRQFYEGNVR 328


>gi|297816928|ref|XP_002876347.1| hypothetical protein ARALYDRAFT_486042 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322185|gb|EFH52606.1| hypothetical protein ARALYDRAFT_486042 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 334

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 162/333 (48%), Positives = 225/333 (67%), Gaps = 12/333 (3%)

Query: 1   MSLLRKL-----PTKFLIPQSVLVTRSFT----KSGAFPDEPTSAYYDDLVNAAGHERDL 51
           M+LLR+       ++FL+ QS+   RSF+       A P   T   +D+L+  AG+  D 
Sbjct: 1   MALLRRFVKEANNSRFLL-QSI-SGRSFSTVNPNPTASPGRRTCVEFDNLIYEAGNSGDF 58

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIG 111
           E VR LLN R  + CFNT  TF F+TNT++  S L DL R L + + G+ RK AY+TLI 
Sbjct: 59  EAVRRLLNSRVVNACFNTTATFKFLTNTDSYSSSLEDLRRILPQTEAGYTRKHAYETLIA 118

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           RLCKL +ID+AL +++ MA G F LS   FHPIL+ LT+  + EEAW + E+M+   +  
Sbjct: 119 RLCKLGRIDDALVLINDMAIGKFELSTSIFHPILNTLTKKNKFEEAWRVAELMRSHAIPM 178

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK-LGADARTYDALVLGACRAGRVEEAFVL 230
           D+T+YNY LT++C++G++   S VL+K+EEE  +  D RTYDALVLGAC++G VE A V+
Sbjct: 179 DVTSYNYFLTSHCYEGDVAEASKVLRKLEEEGVMSPDTRTYDALVLGACKSGNVEAAMVI 238

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG 290
           LRRM ++G SVLY+T+A+V+G LL  GYYA +V+FVM   G+D +LD E  GSL SKLI 
Sbjct: 239 LRRMEEEGLSVLYATHAYVIGELLESGYYALSVEFVMAYAGKDKRLDEENLGSLASKLIK 298

Query: 291 LERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
            +RF EA  +LKEM+ R L+MG  LR++++ NV
Sbjct: 299 RKRFKEAKLVLKEMSVRGLRMGDALREFHDTNV 331


>gi|297823947|ref|XP_002879856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325695|gb|EFH56115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 338

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 155/328 (47%), Positives = 212/328 (64%), Gaps = 4/328 (1%)

Query: 1   MSLLR----KLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRY 56
           MSLLR    K P        +L  RSF+          +  +D L+N AG   D ETVR 
Sbjct: 1   MSLLRRRFLKQPVNSRTFLHILADRSFSTVKIPSGRRKTTEFDKLINEAGSSGDFETVRR 60

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKL 116
           LLN R     FNT+ TF F+TNT +  S L D+ R L ++D GF RK+AYD LI RLCKL
Sbjct: 61  LLNNRIVLGSFNTSETFKFLTNTVSYSSALEDIRRVLPQIDGGFSRKNAYDILISRLCKL 120

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
            +I++AL V+  M+ G   L+  TFHPIL  LTR  +++EAW ++E M+   V  D+TAY
Sbjct: 121 GRINDALIVIGDMSNGRLSLTPSTFHPILCSLTRKNKIDEAWRVVESMRSKSVPMDVTAY 180

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           NY LT++C+ G + + S V++K+EE+ +  D+R+YDALVLGACRAG+VE A  +LRRM +
Sbjct: 181 NYFLTSHCYDGEMESASEVMRKIEEDGISTDSRSYDALVLGACRAGKVEAAMAILRRMEE 240

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
           D  +VLYST+AHV+  L+  GYYA  ++FVM   G+D+ LD E FG L  KL+  +RF E
Sbjct: 241 DCVTVLYSTHAHVIAGLVEGGYYALGLEFVMAYAGKDLGLDGESFGFLAGKLVKRKRFEE 300

Query: 297 ANFILKEMNKRDLKMGFKLRDYYEINVK 324
           A  ++KEM  R L+MG +LR ++E NV+
Sbjct: 301 AKIVVKEMVMRGLRMGDELRQFFEGNVR 328


>gi|356529368|ref|XP_003533266.1| PREDICTED: pentatricopeptide repeat-containing protein At2g40240,
           mitochondrial-like [Glycine max]
          Length = 332

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 153/324 (47%), Positives = 215/324 (66%), Gaps = 4/324 (1%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           MS LRK P K L       T    K   FPD+PT+AYYD L  AAG   D   +R +LNK
Sbjct: 1   MSFLRKSPNKTLTTLRRFATTLAAKP--FPDDPTAAYYDQLAFAAGDSGDFHALRDVLNK 58

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKID 120
           R +D   NT  TFNF+ +T  S SV+ +L +TL+ L++G  R+SA D+L+ RLCKL++ D
Sbjct: 59  RIQDGFLNTKITFNFLKDTNFSPSVIDNLVQTLSHLNQGATRRSALDSLVTRLCKLRRAD 118

Query: 121 EALRVVDIMAEGGF-GLSAITFHPILSVLTRG-KRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           EALRV+D +A       +A TF+P+L  LTR  K ++ A  +++ M  + ++ D+TA+N 
Sbjct: 119 EALRVIDSLARDNVCAPAACTFYPVLKCLTREEKSLDHARRVVDHMARLGIALDVTAHNI 178

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L A+C+ G L A +GVLK+MEE+ +GAD RT+DALVLGACRAG+VE A V++RRMVDDG
Sbjct: 179 FLMAHCYAGELDAAAGVLKRMEEDGVGADPRTFDALVLGACRAGKVEGAMVVVRRMVDDG 238

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
             +LYST+  ++G LL++  Y  A+K+V V  G+D  LD+EL G L  KL+ L+R  E  
Sbjct: 239 VPMLYSTHMCIIGTLLKMKCYELAMKYVRVFVGKDKLLDSELLGCLACKLVNLKRVKEGM 298

Query: 299 FILKEMNKRDLKMGFKLRDYYEIN 322
            +L+EM ++ + MG KL  +YE+N
Sbjct: 299 SVLEEMKQKGVPMGHKLNKFYEMN 322


>gi|357498855|ref|XP_003619716.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494731|gb|AES75934.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 333

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/327 (46%), Positives = 208/327 (63%), Gaps = 8/327 (2%)

Query: 1   MSLLRKLPTKFLIPQSVLVT-RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN 59
           MS LRK      I  S L T R F+     P   TS  YD L        D  ++  +LN
Sbjct: 1   MSFLRKHLNN--ISHSPLSTLRRFSNLTPPPTSATS--YDTLAANFATSGDFTSLHSILN 56

Query: 60  KRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKI 119
           KR +   FNT +TFNFITN+  + S+L +L  TL+RL+ GF R++A+D+LI RLCKL+ I
Sbjct: 57  KRIQHGFFNTKHTFNFITNSNFTPSLLQNLITTLSRLNPGFTRRNAFDSLITRLCKLRLI 116

Query: 120 DEALRVVDIMA---EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
           ++AL VV  M+   +    L A TFHPILS LTR K +++A  ++EVM E+ V  DLTA+
Sbjct: 117 EDALTVVQSMSRVDDMDNELKACTFHPILSFLTRVKSLDQAKRVVEVMSELGVPLDLTAH 176

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           NY L  YC+ G++ A   VL+ MEEE    D+RTYDALVLGACR   V  A VL+RRMVD
Sbjct: 177 NYFLMTYCYVGDVEAAVTVLRTMEEEGFCFDSRTYDALVLGACRKRNVVGAMVLVRRMVD 236

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
           DG  +LYST+  V+ AL++   + QA+ +V    G+D  LD ELFG LG KL+G+ +  E
Sbjct: 237 DGAPMLYSTHMFVIEALVKRDLFEQALSYVRCFSGKDKGLDCELFGCLGGKLMGMSKLKE 296

Query: 297 ANFILKEMNKRDLKMGFKLRDYYEINV 323
           A  +L+EM+++ LKM   +R++Y++NV
Sbjct: 297 AMLVLREMDEKGLKMCKNVREFYDMNV 323


>gi|224099629|ref|XP_002311557.1| predicted protein [Populus trichocarpa]
 gi|222851377|gb|EEE88924.1| predicted protein [Populus trichocarpa]
          Length = 215

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/231 (51%), Positives = 149/231 (64%), Gaps = 28/231 (12%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           +S LRKL  K LIP+S++   + +    FP+ PTSAYYDDL N A H+R+   +RYLLNK
Sbjct: 3   ISHLRKLAKKSLIPRSLVCLTTASPFSTFPNLPTSAYYDDLSNTARHKRNFSKLRYLLNK 62

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKID 120
           R RD CFNT +TF FITN+E SLS L+DL +TLARLD GFPRKSA+D LI          
Sbjct: 63  RVRDHCFNTTSTFKFITNSETSLSNLADLIQTLARLDNGFPRKSAFDALIA--------- 113

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
                V   + G               L R K ME +W L+E+M E+ +SPD T  NYLL
Sbjct: 114 -----VPASSTG--------------CLARKKNMERSWSLIEIMAELGISPDRTTLNYLL 154

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           TAYCFKG+LTA SGV+K++EEE LG D+R YD  VL AC+ G+VE A V++
Sbjct: 155 TAYCFKGDLTAASGVVKRIEEEVLGVDSRAYDVPVLDACKKGKVEGALVVM 205


>gi|294460219|gb|ADE75692.1| unknown [Picea sitchensis]
          Length = 433

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 126/245 (51%), Gaps = 3/245 (1%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTL 93
            ++ YD LVN  G  +D E ++ +L + +  CC  +A TF+F T   +   +L+++   L
Sbjct: 160 ATSNYDRLVNILGRSKDFEALQRVLLEISAVCCNYSAKTFSFATAWHDDPDMLNEVMEML 219

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
            +L+    R+ AY+ LI  LC+    + AL V++ M          ++ P++ + ++  R
Sbjct: 220 EKLELSL-RRDAYEMLISVLCQKNHANAALMVLEKMGSRDCAPRMQSYRPLIQLYSQNNR 278

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M++   + +++K+    P    Y+ +L+A C K         +K+M       DA TY+ 
Sbjct: 279 MDKVQEIFDMLKDCPGDP--ICYHIVLSALCNKKQFAEAVEFVKRMVNMGWKPDAITYNI 336

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++  AC  G+++ A  L  R  ++G + LY TY +++  L R+  +  A  F++   G+D
Sbjct: 337 MIRAACNLGKIQGALKLFDRSKEEGLTPLYHTYVNILDGLFRIRGFDGAHSFLIQHSGKD 396

Query: 274 IKLDT 278
            KLD+
Sbjct: 397 RKLDS 401


>gi|294462290|gb|ADE76694.1| unknown [Picea sitchensis]
          Length = 433

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 125/244 (51%), Gaps = 3/244 (1%)

Query: 35  SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLA 94
           ++ Y+ L N  G  +D E +  +L + +   C  +A TF+F T   +   +L+++   L 
Sbjct: 161 TSNYERLANILGRAKDFEALHMILLEMSAVFCNYSAKTFSFATAWHDDPDMLNEVMEMLE 220

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +L+  + R  AY+ L+  LC+    + AL V++ M      L   T+ P++ +  +  RM
Sbjct: 221 KLEL-YLRTVAYEMLVSVLCQKNHANAALVVLEKMGSRDCALRMRTYRPLIQLYCQKNRM 279

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +   + E++K+    P    Y+ +L+A C +         +K+M       DA T+D +
Sbjct: 280 AKVQEVFEMLKDCPRDP--ICYHIVLSALCNRKKFAEAVKFVKRMVNMGWKPDAITHDIM 337

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +  AC  GR++ A  L  R+ ++G + LY TY H++  L ++  + +A  F++  GG+D 
Sbjct: 338 IRAACNLGRIQGALKLFDRLKEEGLTPLYQTYVHILNGLFQIRGFDEAHSFLIQHGGKDR 397

Query: 275 KLDT 278
           KLD+
Sbjct: 398 KLDS 401


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 124/256 (48%), Gaps = 5/256 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L ++  + +++ + R  T  G  PD  T   ++ L+NA     D      L  + 
Sbjct: 377 TLIVALSSQNRLEEALDLARELTVKGLSPDVYT---FNILINALCKVGDPHLGIRLFEEM 433

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKKI 119
               C     T+N + +   S+  L +    L  ++  G PR +  Y+T+I  LCK  +I
Sbjct: 434 KSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRI 493

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +EA  V D M   G   SA+TF+ ++  L + KR+++A  L+E M +  + P+   YN +
Sbjct: 494 EEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSI 553

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           LT YC +GN+   + +L+ M       D  TY  L+ G C+AGR + A  LLR M   G 
Sbjct: 554 LTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGI 613

Query: 240 SVLYSTYAHVMGALLR 255
                 Y  V+ +L R
Sbjct: 614 RPTPKAYNPVIQSLFR 629



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 128/310 (41%), Gaps = 5/310 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L++ L     +  +VL+    +  G  PDE T   +  L+     E  +E    +  K 
Sbjct: 202 TLIKALCRAHQVRTAVLMLEEMSSHGVAPDETT---FTTLMQGFIEEGSIEAALRVKAKM 258

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSD-LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
               C  T  T N + N    +  + D L      +  GF P +  Y+T +  LC+   +
Sbjct: 259 MEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHV 318

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
             AL+V+D+M + G      T++ +++ L++   ++EA G++  M +    PD T +N L
Sbjct: 319 SHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTL 378

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           + A   +  L     + +++  + L  D  T++ L+   C+ G       L   M   G 
Sbjct: 379 IVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGC 438

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +    TY  ++  L  +G    A+  +           T  + ++   L    R  EA  
Sbjct: 439 TPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEE 498

Query: 300 ILKEMNKRDL 309
           +  +M+ + +
Sbjct: 499 VFDQMDAQGI 508



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 123/283 (43%), Gaps = 6/283 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---NTENSLSVLSD 88
           +P    Y+ ++N      +L+  + ++N+     C     TFN +    +++N L    D
Sbjct: 334 DPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALD 393

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R L    KG  P    ++ LI  LCK+      +R+ + M   G     +T++ ++  
Sbjct: 394 LARELTV--KGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDH 451

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++  A  L+  M+          YN ++ A C K  +     V  +M+ + +   
Sbjct: 452 LCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRS 511

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A T++ L+ G C+A R+++A  L+ +MV +G      TY  ++    + G   +A   + 
Sbjct: 512 AVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILE 571

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  ++D   +G+L + L    R   A  +L+ M  + ++
Sbjct: 572 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIR 614



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 5/234 (2%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           SG  PDE T   Y+ L++       L     LLN+   + C  +  T+N I +       
Sbjct: 436 SGCTPDEVT---YNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMR 492

Query: 86  LSDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           + +      ++D +G  R +  ++TLI  LCK K+ID+A  +++ M + G   + IT++ 
Sbjct: 493 IEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNS 552

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           IL+   +   +++A  ++E M       D+  Y  L+   C  G       +L+ M  + 
Sbjct: 553 ILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKG 612

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +    + Y+ ++    R   + +A  L R M + G+     TY  V  +L R G
Sbjct: 613 IRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGG 666



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     +TLI  LC+  ++  A+ +++ M+  G      TF  ++        +E A  +
Sbjct: 195 PDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRV 254

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E   SP     N L+  YC  G +    G +++   +    D  TY+  V G C+
Sbjct: 255 KAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQ 314

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G V  A  ++  M+ +G      TY  V+  L + G   +A   V     R    DT  
Sbjct: 315 NGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTT 374

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
           F +L   L    R  EA  + +E+  + L       D Y  N+
Sbjct: 375 FNTLIVALSSQNRLEEALDLARELTVKGLS-----PDVYTFNI 412



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ L+  L +  K+     V + M   G     +T + ++  L R  ++  A  ++E M 
Sbjct: 165 FNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMS 224

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V+PD T +  L+  +  +G++ A   V  KM E        T + L+ G C+ GRVE
Sbjct: 225 SHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVE 284

Query: 226 EAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDTEL 280
           +A   +++ + DG     V Y+T+ H    L + G+ + A+K   +M+  G D  + T  
Sbjct: 285 DALGYIQQEIADGFEPDQVTYNTFVH---GLCQNGHVSHALKVMDLMLQEGHDPDVFT-- 339

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + ++ + L      +EA  I+ +M  R
Sbjct: 340 YNTVINCLSKNGELDEAKGIVNQMVDR 366


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 5/256 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L T   + +++ + R  T  G  PD  T   ++ L+NA     D      L  + 
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYT---FNILINALCKVGDPHLALRLFEEM 417

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKS-AYDTLIGRLCKLKKI 119
               C     T+N + +   SL  L      L  ++  G PR +  Y+T+I  LCK  +I
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +EA  V D M   G   +AITF+ ++  L + K++++A+GL+  M    + P+   YN +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSI 537

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           LT YC +G++   + +L+ M       D  TY  L+ G C+AGR + A  +LR M   G 
Sbjct: 538 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 597

Query: 240 SVLYSTYAHVMGALLR 255
                 Y  V+ +L R
Sbjct: 598 RPTPKAYNPVLQSLFR 613



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 5/306 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L++ L     +  +VL+    +  G  PDE T   +  L+     E  +E    +  + 
Sbjct: 186 TLMKALCRAHQVRTAVLMLEEMSSRGVAPDETT---FTTLMQGFVEEGSIEAALRVKARM 242

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSD-LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
               C  T  T N + N    L  + D L      +  GF P +  Y+T +  LC+   +
Sbjct: 243 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 302

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
             AL+V+D+M + G      T++ +++ L +  ++EEA G++  M +    PD+T +N L
Sbjct: 303 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 362

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           + A C    L     + +++  + +  D  T++ L+   C+ G    A  L   M + G 
Sbjct: 363 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 422

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +    TY  ++  L  LG   +A+  +           T  + ++   L    R  EA  
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 300 ILKEMN 305
           +  +M+
Sbjct: 483 VFDQMD 488



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 123/283 (43%), Gaps = 6/283 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           +P    Y+ +VN       LE  + +LN+     C     TFN +     T N L    D
Sbjct: 318 DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALD 377

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R +    KG  P    ++ LI  LCK+     ALR+ + M   G     +T++ ++  
Sbjct: 378 LARQVTV--KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++ +A  L++ M+          YN ++   C K  +     V  +M+ + +  +
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A T++ L+ G C+  ++++AF L+ +M+ +G      TY  ++    + G   +A   + 
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  ++D   +G+L + L    R   A  +L+ M  + ++
Sbjct: 556 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 4/171 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++++   CK   I +A  +++ M   GF +  +T+  +++ L +  R + A  +
Sbjct: 529 PNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKV 588

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   + P   AYN +L +   + N+     + ++M E     DA TY  +  G CR
Sbjct: 589 LRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCR 648

Query: 221 AG-RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG---YYAQAVKFVM 267
            G  ++EAF  +  MVD G    +S++  +   LL LG   Y+ +A++ +M
Sbjct: 649 GGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIM 699



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 4/204 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+  L +  K+     V   M   G     +TF+ ++  L R  ++  A  ++E M 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 208

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V+PD T +  L+  +  +G++ A   V  +M E    A   T + L+ G C+ GRVE
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDTELFGS 283
           +A   +++ + DG      TY   +  L +  +   A+K   VMV  G D  + T  +  
Sbjct: 269 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT--YNI 326

Query: 284 LGSKLIGLERFNEANFILKEMNKR 307
           + + L    +  EA  IL +M  R
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDR 350



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 79/197 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TL+  LC+  ++  A+ +++ M+  G      TF  ++        +E A  +
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E+  S      N L+  YC  G +    G +++   +    D  TY+  V G C+
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 298

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V  A  ++  MV +G      TY  V+  L + G   +A   +     R    D   
Sbjct: 299 NDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITT 358

Query: 281 FGSLGSKLIGLERFNEA 297
           F +L + L    R  EA
Sbjct: 359 FNTLIAALCTGNRLEEA 375



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 2/149 (1%)

Query: 120 DEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           D+A+ ++    +  FG+ A  + ++ +L+VL  G +M+    +   M    + PD+  +N
Sbjct: 126 DDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFN 185

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+ A C    +     +L++M    +  D  T+  L+ G    G +E A  +  RM++ 
Sbjct: 186 TLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM 245

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G S    T   ++    +LG    A+ ++
Sbjct: 246 GCSATKVTVNVLINGYCKLGRVEDALGYI 274


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 123/256 (48%), Gaps = 5/256 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L ++  + +++ + R  T  G  PD  T   ++ L+NA     D      L  + 
Sbjct: 375 TLIVALCSQNRLEEALDLARELTVKGLSPDVYT---FNILINALCKVGDPHLGIRLFEEM 431

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKKI 119
               C     T+N + +   S+  L +    L  ++  G PR +  Y+T+I  LCK  +I
Sbjct: 432 KSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRI 491

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +EA  V D M   G   SA+TF+ ++  L + KR+++A  L+E M +  + P    YN +
Sbjct: 492 EEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSI 551

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           LT YC +G+L   + +L+ M       D  TY  L+ G C+AGR + A  LLR M   G 
Sbjct: 552 LTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGI 611

Query: 240 SVLYSTYAHVMGALLR 255
                 Y  V+ +L R
Sbjct: 612 RPTPKAYNPVIQSLFR 627



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 127/306 (41%), Gaps = 5/306 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L++ L     +  +VL+    +     PDE T   +  L+     E  +E    +  K 
Sbjct: 200 TLIKALCRAHQVRTAVLMLEEMSSHAVAPDETT---FTTLMQGFIEEGSIEAALRVKTKM 256

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKI 119
               C  T  T N + N    +  + D    + + +  GF P +  Y+T +  LC+   +
Sbjct: 257 METGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHV 316

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
             AL+V+D+M + G      T++ +++ L++   ++EA G++  M +    PD T +N L
Sbjct: 317 SHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTL 376

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           + A C +  L     + +++  + L  D  T++ L+   C+ G       L   M   G 
Sbjct: 377 IVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGC 436

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +    TY  ++  L  +G    A+  +           T  + ++   L    R  EA  
Sbjct: 437 APDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEE 496

Query: 300 ILKEMN 305
           +  +M+
Sbjct: 497 VFDQMD 502



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 122/283 (43%), Gaps = 6/283 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---NTENSLSVLSD 88
           +P    Y+ ++N      +L+  + ++N+     C     TFN +     ++N L    D
Sbjct: 332 DPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALD 391

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R L    KG  P    ++ LI  LCK+      +R+ + M   G     +T++ ++  
Sbjct: 392 LARELTV--KGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDH 449

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++  A  L++ M+          YN ++ A C +  +     V  +M+   +   
Sbjct: 450 LCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRS 509

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A T++ L+ G C+A R+++A  L+ +MV +G      TY  ++    + G   +A   + 
Sbjct: 510 AVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILE 569

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  ++D   +G+L + L    R   A  +L+ M  + ++
Sbjct: 570 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIR 612



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 5/234 (2%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           SG  PDE T   Y+ L++       L     LL +   + C  +  T+N I +       
Sbjct: 434 SGCAPDEVT---YNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMR 490

Query: 86  LSDLCRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           + +      ++D     +SA  ++TLI  LCK K+ID+A  +++ M + G   S IT++ 
Sbjct: 491 IEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNS 550

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           IL+   +   +++A  ++E M       D+  Y  L+   C  G       +L+ M  + 
Sbjct: 551 ILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKG 610

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +    + Y+ ++    R   + +A  L R M + G+     TY  V   L R G
Sbjct: 611 IRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGG 664



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 113/297 (38%), Gaps = 24/297 (8%)

Query: 46  GHERDLETVRYLLNKRAR--------DCCFNTANTFNFITNT---ENSLSVLSDLCRTL- 93
           GHE     VR  +   AR        D   N  NTF    +T    + L+VL++  R   
Sbjct: 119 GHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKL 178

Query: 94  ------ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
                    D+G  P     +TLI  LC+  ++  A+ +++ M+         TF  ++ 
Sbjct: 179 LESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQ 238

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                  +E A  +   M E   SP     N L+  YC  G +    G ++K   +    
Sbjct: 239 GFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEP 298

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D  TY+  V   C+ G V  A  ++  M+ +G      TY  V+  L + G   +A   V
Sbjct: 299 DQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIV 358

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
                R    DT  F +L   L    R  EA  + +E+  + L       D Y  N+
Sbjct: 359 NQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLS-----PDVYTFNI 410


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 3/223 (1%)

Query: 88  DLCRTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D  + L R+  G    P   AY  LI  LCK K++ EA   +D+M +       +T++ +
Sbjct: 457 DSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSV 516

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L + +R+ +A+ L + M+   V PD+  Y+ ++ ++C   NL +   +L++M+E K 
Sbjct: 517 VDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKC 576

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY AL+ G C+AG V++AF + + M+  G +    TY  ++  L ++    QA +
Sbjct: 577 VPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAE 636

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            + +   +    D+  +  L + L    R  EA  +L+EM  +
Sbjct: 637 MLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDK 679



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 103/207 (49%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P    Y+T+I   CKL +IDEA  +++ M +GG   + +T+  +L    +  + E+A GL
Sbjct: 1016 PNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGL 1075

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +EVM E    P+L  YN LL  +C K  +     +L  M ++    +  +Y+ ++ G C+
Sbjct: 1076 VEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCK 1135

Query: 221  AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            A +V E  +LL +M+ +       T+  ++ A+ +      A +   +        +   
Sbjct: 1136 ATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVT 1195

Query: 281  FGSLGSKLIGLERFNEANFILKEMNKR 307
            + SL   L    RF++A ++L+EM ++
Sbjct: 1196 YNSLVHGLCKSRRFDQAEYLLREMTRK 1222



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 136/313 (43%), Gaps = 18/313 (5%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           S+LR L        +VL  R  +K+      P S  Y+ ++N       L+    LL + 
Sbjct: 201 SILRGLCDAGQCSDAVLHFREMSKTCP----PDSVTYNTMINGLSKSDRLDDAIRLLEEM 256

Query: 62  ARDCCFNTANTFNFITN-------TENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRL 113
             +       ++N + +        EN+L +L  +      + +G P    +Y T+I  L
Sbjct: 257 VDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQM------VTRGCPPDVVSYTTVINGL 310

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           CKL ++DEA RV+D M + G   + IT+  ++    R   ++ A  L+  M E    P+ 
Sbjct: 311 CKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNA 370

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
             YN ++  +C + ++     VL+ M +     DA  Y  ++ G C+AG++ EA  LL +
Sbjct: 371 ITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQ 430

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
           M+  G     +  + ++ AL +      A + + +  G D   D   +  L   L   +R
Sbjct: 431 MIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKR 490

Query: 294 FNEANFILKEMNK 306
             EA   L  M K
Sbjct: 491 LPEAESWLDVMVK 503



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 35/259 (13%)

Query: 36   AYYDDLVNAAGHERDLETVRYLLN-----KRARD---------CCFNTANTFNFITNTEN 81
             ++D   +  G+  D  T   LL      KR +D         CC  + N F F      
Sbjct: 829  GFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLCC--SPNMFTFTI---- 882

Query: 82   SLSVLSDLCR-----TLARLDKGFPRKSA------YDTLIGRLCKLKKIDEALRVVDIMA 130
               ++  LCR     T   L K  PR         ++ +I  LC  +K+D AL +   M 
Sbjct: 883  ---LIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEME 939

Query: 131  EGGFGLSAI-TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E G     + T+  I+  L +  ++++A  L+E M     SP++  Y+ LL   C  G L
Sbjct: 940  ESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKL 999

Query: 190  TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
               + +L++M       +  TY+ ++ G C+ GR++EA+ LL  MVD G      TY  +
Sbjct: 1000 DEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVL 1059

Query: 250  MGALLRLGYYAQAVKFVMV 268
            + A  + G    A+  V V
Sbjct: 1060 LDAFCKCGKAEDAIGLVEV 1078



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 22/235 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L++A    + L      L+   ++ C+    T+N         SV+  LC++
Sbjct: 473 PDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYN---------SVVDGLCKS 523

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             R++  F            P    Y  +I   CK   +D A ++++ M E       +T
Sbjct: 524 -RRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVT 582

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  +++ L +   +++A+ + + M     +P+L  YN L+   C    +   + +L+ M 
Sbjct: 583 YSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMR 642

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           ++    D+ TY  L+ G C A R+EEA+ +LR M D G      TY  ++ AL +
Sbjct: 643 KQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQK 697



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 3/176 (1%)

Query: 90   CRTLARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            C+ L+ +  KG  P   +Y+T+I  LCK  K+ E + +++ M         +TF+ I+  
Sbjct: 1108 CQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 1167

Query: 148  LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGA 206
            + +  R++ A+ L  +++E   +P+L  YN L+   C          +L++M  ++    
Sbjct: 1168 MCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSP 1227

Query: 207  DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            D  TY+ ++ G C++ RV+ A+ L  +M+ DG +    TY+ V+ +L +  +  +A
Sbjct: 1228 DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 1283



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 26/243 (10%)

Query: 25   KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR-DCCFNTANTFNFITNTENSL 83
            +SG  P+  T   Y+ LV+     R  +   YLL +  R   C     T+N         
Sbjct: 1186 ESGCTPNLVT---YNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN--------- 1233

Query: 84   SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
            +V+  LC++  R+D+ +            P    Y  +I  LCK + +DEA  V+++M +
Sbjct: 1234 TVIDGLCKS-KRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLK 1292

Query: 132  GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
             GF   AIT+  ++    +   +++A  +++++      PD+  ++  +     +G L  
Sbjct: 1293 NGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQ 1352

Query: 192  TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
               +L+ M    L  D  TY+ L+ G C A   E+A  L   M   G     +TY  ++G
Sbjct: 1353 AGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVG 1412

Query: 252  ALL 254
             L+
Sbjct: 1413 HLV 1415



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 25/192 (13%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           +G  PD  T   Y  ++++   + +L++   +L +     C     T++ + N       
Sbjct: 539 AGVMPDVVT---YSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALIN------- 588

Query: 86  LSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
              LC+    +DK F            P    Y+TLI  LCK+ K+++A  +++IM +  
Sbjct: 589 --GLCKA-GTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQS 645

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
               +IT+  +++ L    R+EEAW ++  MK+    PD   Y  LL A     NL    
Sbjct: 646 CTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVE 705

Query: 194 GVLKKMEEEKLG 205
            +LK+ME  + G
Sbjct: 706 QLLKEMEATEEG 717



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I   CK  K+ EA  +++ M   G          ++  L +   ++ A  L
Sbjct: 403 PDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQEL 462

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +   +  +PD+ AY+ L+ A C    L      L  M + +   D  TY+++V G C+
Sbjct: 463 LRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCK 522

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + R+ +AF+L  RM   G      TY+ V+ +  +
Sbjct: 523 SRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCK 557



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 100/231 (43%), Gaps = 7/231 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P++        K+  +PD  T   Y+ +V+     R +     L ++           T
Sbjct: 491 LPEAESWLDVMVKNRCYPDVVT---YNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVT 547

Query: 73  FNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           ++ + ++    + L    + L R+   K  P    Y  LI  LCK   +D+A  V   M 
Sbjct: 548 YSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEML 607

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   + +T++ ++  L +  ++E+A  ++E+M++   +PD   Y  L+   C    L 
Sbjct: 608 GCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLE 667

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM--VDDGQ 239
               VL++M+++    D  TY  L+    +   +E    LL+ M   ++GQ
Sbjct: 668 EAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATEEGQ 718



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/285 (19%), Positives = 123/285 (43%), Gaps = 23/285 (8%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
            P    Y+ L++    + ++E    LL+   +  C     ++N         +V++ LC+ 
Sbjct: 1086 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYN---------TVIAGLCKA 1136

Query: 93   LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
              ++ +G             P    ++T+I  +CK  ++D A  + +++ E G   + +T
Sbjct: 1137 -TKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVT 1195

Query: 141  FHPILSVLTRGKRMEEA-WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
            ++ ++  L + +R ++A + L E+ ++   SPD+  YN ++   C    +     +  +M
Sbjct: 1196 YNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQM 1255

Query: 200  EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
              + L  D  TY  ++   C+   ++EA  +L  M+ +G      TY  ++    + G  
Sbjct: 1256 LSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNL 1315

Query: 260  AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +A++ + +   +    D   F      L    R  +A  +L+ M
Sbjct: 1316 DKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETM 1360



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 1/202 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI    +  KI  A  + D M   G    A     IL  L    +  +A      M 
Sbjct: 164 YSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMS 223

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +    PD   YN ++        L     +L++M +     +  +Y+ ++ G C+A RVE
Sbjct: 224 KT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVE 282

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A  LL +MV  G      +Y  V+  L +L    +A + +     R  + +   +G+L 
Sbjct: 283 NALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 342

Query: 286 SKLIGLERFNEANFILKEMNKR 307
                +   + A  ++++M +R
Sbjct: 343 DGFCRVGDLDGAVELVRKMTER 364



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 93/202 (46%), Gaps = 5/202 (2%)

Query: 108  TLIGRLCK-LKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
            T++G++ + ++  D AL   D   ++ G+     T + +L  L R KR ++A  L     
Sbjct: 812  TVVGKVLQGVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDA--LQVYRN 869

Query: 166  EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            ++  SP++  +  L+   C  G++     +LK+M    +  +   ++ ++ G C A +++
Sbjct: 870  KLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLD 929

Query: 226  EAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
             A  L + M + G       TY+ ++ +L++ G    A + V     +    +   + SL
Sbjct: 930  SALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSL 989

Query: 285  GSKLIGLERFNEANFILKEMNK 306
               L    + +EA  +L+ M +
Sbjct: 990  LHGLCKAGKLDEATALLQRMTR 1011


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 112/239 (46%), Gaps = 5/239 (2%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           + R  T  G  PD  T   ++ L+NA     D +    L  +     C     T+N + +
Sbjct: 382 LARQVTLKGLSPDVYT---FNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLID 438

Query: 79  TENSLSVLSDLCRTLARLDK-GFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
              SL  L      L  ++  G PR +  Y+T+I  LCK  +I+EA  V D M   G   
Sbjct: 439 NLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 498

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           +AITF+ ++  L + KR+++A  L+  M    + P+   YN +LT YC +G++   + +L
Sbjct: 499 NAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 558

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + M       D  TY  L+ G C+AGR + A  LLR M   G       Y  V+ +L R
Sbjct: 559 QTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFR 617



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 131/306 (42%), Gaps = 5/306 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L++ L     +  +VL+    + SG  PDE T   +  L+     E  ++    +  + 
Sbjct: 190 TLMKALCRAHQVRTAVLMLEEMSSSGVAPDETT---FTTLMQGFVEEGSIKAALRVKARM 246

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSD-LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
               C  T  T N + N    L  + D L      +  GF P +  Y+T +  LC+   +
Sbjct: 247 LEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHV 306

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
             AL+V+D+M + G      T++ +++ L +  ++EEA G++  M E    PD+T +N L
Sbjct: 307 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTL 366

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           + A C    L     + +++  + L  D  T++ L+   C+ G  + A  L   M   G 
Sbjct: 367 IVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGC 426

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +    TY  ++  L  LG   +A+  +           T  + ++   L    R  EA  
Sbjct: 427 TPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEE 486

Query: 300 ILKEMN 305
           +  +M+
Sbjct: 487 VFDQMD 492



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 122/283 (43%), Gaps = 6/283 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---NTENSLSVLSD 88
           +P    Y+ +VN       LE  + +LN+     C     TFN +     + N L    D
Sbjct: 322 DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALD 381

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R +    KG  P    ++ LI  LCK+     ALR+ + M   G     +T++ ++  
Sbjct: 382 LARQVTL--KGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDN 439

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++ +A  L++ M+          YN ++   C K  +     V  +M+ + +  +
Sbjct: 440 LCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 499

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A T++ L+ G C+  R+++A  L+ +M+ +G      TY  ++    + G   +A   + 
Sbjct: 500 AITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQ 559

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  ++D   +G+L + L    R   A  +L+ M  + ++
Sbjct: 560 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMR 602



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 8/173 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++++   CK   I +A  ++  M   GF +  +T+  +++ L +  R + A  L
Sbjct: 533 PNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKL 592

Query: 161 MEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
           +  M  K +R +P   AYN ++ +   + N      + ++M E     DA TY  +  G 
Sbjct: 593 LRGMRIKGMRATP--KAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGL 650

Query: 219 CRAG-RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG---YYAQAVKFVM 267
           CR G  + EAF  L  MVD G    +S++  +   LL LG   Y+ +A++ ++
Sbjct: 651 CRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIII 703



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 4/204 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+  L +  K+     V   M E G     +TF+ ++  L R  ++  A  ++E M 
Sbjct: 153 YNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 212

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V+PD T +  L+  +  +G++ A   V  +M E        T + L+ G C+ GRVE
Sbjct: 213 SSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVE 272

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDTELFGS 283
           +A   +++ + +G      TY   +  L + G+   A+K   VMV  G D  + T  +  
Sbjct: 273 DALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFT--YNI 330

Query: 284 LGSKLIGLERFNEANFILKEMNKR 307
           + + L    +  EA  IL +M +R
Sbjct: 331 VVNCLCKNGQLEEAKGILNQMVER 354



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 6/247 (2%)

Query: 14  PQSVL-VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           PQ  L +      SG  PDE T   Y+ L++       L     LL +     C  +  T
Sbjct: 411 PQLALRLFEEMKSSGCTPDEVT---YNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVT 467

Query: 73  FNFITNTENSLSVLSDLCRTLARLD-KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMA 130
           +N I +       + +      ++D +G  R +  ++TLI  LCK K+ID+A +++  M 
Sbjct: 468 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMI 527

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   + IT++ IL+   +   +++A  +++ M       D+  Y  L+   C  G   
Sbjct: 528 SEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQ 587

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               +L+ M  + + A  + Y+ ++    R     +A  L R M + G+     TY  V 
Sbjct: 588 VALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVF 647

Query: 251 GALLRLG 257
             L R G
Sbjct: 648 RGLCRGG 654



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TL+  LC+  ++  A+ +++ M+  G      TF  ++        ++ A  +
Sbjct: 183 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRV 242

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E+  SP     N L+  YC  G +    G +++        D  TY+  V G C+
Sbjct: 243 KARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQ 302

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G V  A  ++  MV +G      TY  V+  L + G   +A   +     R    D   
Sbjct: 303 NGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITT 362

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
           F +L   L    R  EA  + +++  + L       D Y  N+
Sbjct: 363 FNTLIVALCSGNRLEEALDLARQVTLKGLS-----PDVYTFNI 400



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 2/135 (1%)

Query: 134 FGLSA--ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
           FG+ A  + ++ +L+VL  G +M+    +   M E  + PD+  +N L+ A C    +  
Sbjct: 144 FGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRT 203

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +L++M    +  D  T+  L+ G    G ++ A  +  RM++ G S    T   ++ 
Sbjct: 204 AVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLIN 263

Query: 252 ALLRLGYYAQAVKFV 266
              +LG    A+ ++
Sbjct: 264 GYCKLGRVEDALGYI 278


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 5/256 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L T   + +++ + R  T  G  PD  T   ++ L+NA     D      L  + 
Sbjct: 269 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYT---FNILINALCKVGDPHLALRLFEEM 325

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKS-AYDTLIGRLCKLKKI 119
               C     T+N + +   SL  L      L  ++  G PR +  Y+T+I  LCK  +I
Sbjct: 326 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 385

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +EA  V D M   G   +AITF+ ++  L + K++++A+ L+  M    + P+   YN +
Sbjct: 386 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 445

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           LT YC +G++   + +L+ M       D  TY  L+ G C+AGR + A  +LR M   G 
Sbjct: 446 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 505

Query: 240 SVLYSTYAHVMGALLR 255
                 Y  V+ +L R
Sbjct: 506 RPTPKAYNPVLQSLFR 521



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 5/306 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L++ L     +  +VL+    +  G  PDE T   +  L+     E  +E    +  + 
Sbjct: 94  TLMKALCRAHQVRTAVLMLEEMSSRGVAPDETT---FTTLMQGFVEEGSIEAALRVKARM 150

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSD-LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
               C  T  T N + N    L  + D L      +  GF P +  Y+T +  LC+   +
Sbjct: 151 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 210

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
             AL+V+D+M + G      T++ +++ L +  ++EEA G++  M +    PD+T +N L
Sbjct: 211 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 270

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           + A C    L     + +++  + +  D  T++ L+   C+ G    A  L   M + G 
Sbjct: 271 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 330

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +    TY  ++  L  LG   +A+  +           T  + ++   L    R  EA  
Sbjct: 331 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 390

Query: 300 ILKEMN 305
           +  +M+
Sbjct: 391 VFDQMD 396



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 123/283 (43%), Gaps = 6/283 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           +P    Y+ +VN       LE  + +LN+     C     TFN +     T N L    D
Sbjct: 226 DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALD 285

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R +    KG  P    ++ LI  LCK+     ALR+ + M   G     +T++ ++  
Sbjct: 286 LARQVTV--KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 343

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++ +A  L++ M+          YN ++   C K  +     V  +M+ + +  +
Sbjct: 344 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 403

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A T++ L+ G C+  ++++AF L+ +M+ +G      TY  ++    + G   +A   + 
Sbjct: 404 AITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 463

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  ++D   +G+L + L    R   A  +L+ M  + ++
Sbjct: 464 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 506



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 4/171 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++++   CK   I +A  +++ M   GF +  +T+  +++ L +  R + A  +
Sbjct: 437 PNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKV 496

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   + P   AYN +L +   + N+     + ++M E     DA TY  +  G CR
Sbjct: 497 LRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCR 556

Query: 221 AG-RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG---YYAQAVKFVM 267
            G  ++EAF  +  MVD G    +S++  +   LL LG   Y+ +A++ +M
Sbjct: 557 GGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIM 607



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 4/205 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+ L+  L +  K+     V   M   G     +TF+ ++  L R  ++  A  ++E M
Sbjct: 56  VYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEM 115

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V+PD T +  L+  +  +G++ A   V  +M E    A   T + L+ G C+ GRV
Sbjct: 116 SSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRV 175

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDTELFG 282
           E+A   +++ + DG      TY   +  L +  +   A+K   VMV  G D  + T  + 
Sbjct: 176 EDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT--YN 233

Query: 283 SLGSKLIGLERFNEANFILKEMNKR 307
            + + L    +  EA  IL +M  R
Sbjct: 234 IVVNCLCKNGQLEEAKGILNQMVDR 258



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 79/197 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TL+  LC+  ++  A+ +++ M+  G      TF  ++        +E A  +
Sbjct: 87  PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 146

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E+  S      N L+  YC  G +    G +++   +    D  TY+  V G C+
Sbjct: 147 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 206

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V  A  ++  MV +G      TY  V+  L + G   +A   +     R    D   
Sbjct: 207 NDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITT 266

Query: 281 FGSLGSKLIGLERFNEA 297
           F +L + L    R  EA
Sbjct: 267 FNTLIAALCTGNRLEEA 283



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 2/149 (1%)

Query: 120 DEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           D+A+ ++    +  FG+ A  + ++ +L+VL  G +M+    +   M    + PD+  +N
Sbjct: 34  DDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFN 93

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+ A C    +     +L++M    +  D  T+  L+ G    G +E A  +  RM++ 
Sbjct: 94  TLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM 153

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G S    T   ++    +LG    A+ ++
Sbjct: 154 GCSATKVTVNVLINGYCKLGRVEDALGYI 182


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 5/256 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L T   + +++ + R  T  G  PD  T   ++ L+NA     D      L  + 
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYT---FNILINALCKVGDPHLALRLFEEM 417

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKS-AYDTLIGRLCKLKKI 119
               C     T+N + +   SL  L      L  ++  G PR +  Y+T+I  LCK  +I
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +EA  V D M   G   +AITF+ ++  L + K++++A+ L+  M    + P+   YN +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 537

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           LT YC +G++   + +L+ M       D  TY  L+ G C+AGR + A  +LR M   G 
Sbjct: 538 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 597

Query: 240 SVLYSTYAHVMGALLR 255
                 Y  V+ +L R
Sbjct: 598 RPTPKAYNPVLQSLFR 613



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 130/306 (42%), Gaps = 5/306 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L++ L     +  +V++    +  G  PDE T   +  L+     E  +E    +  + 
Sbjct: 186 TLMKALCRAHQVRTAVIMLEEMSSRGVAPDETT---FTTLMQGFVEEGSIEAALRVKARM 242

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSD-LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
               C  T  T N + N    L  + D L      +  GF P +  Y+T +  LC+   +
Sbjct: 243 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 302

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
             AL+V+D+M + G      T++ +++ L +  ++EEA G++  M +    PD+T +N L
Sbjct: 303 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 362

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           + A C    L     + +++  + +  D  T++ L+   C+ G    A  L   M + G 
Sbjct: 363 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 422

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +    TY  ++  L  LG   +A+  +           T  + ++   L    R  EA  
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 300 ILKEMN 305
           +  +M+
Sbjct: 483 VFDQMD 488



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 123/283 (43%), Gaps = 6/283 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           +P    Y+ +VN       LE  + +LN+     C     TFN +     T N L    D
Sbjct: 318 DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALD 377

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R +    KG  P    ++ LI  LCK+     ALR+ + M   G     +T++ ++  
Sbjct: 378 LARQVTV--KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++ +A  L++ M+          YN ++   C K  +     V  +M+ + +  +
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A T++ L+ G C+  ++++AF L+ +M+ +G      TY  ++    + G   +A   + 
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  ++D   +G+L + L    R   A  +L+ M  + ++
Sbjct: 556 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 4/171 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++++   CK   I +A  +++ M   GF +  +T+  +++ L +  R + A  +
Sbjct: 529 PNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKV 588

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   + P   AYN +L +   + N+     + ++M E     DA TY  +  G CR
Sbjct: 589 LRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCR 648

Query: 221 AG-RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG---YYAQAVKFVM 267
            G  ++EAF  +  MVD G    +S++  +   LL LG   Y+ +A++ +M
Sbjct: 649 GGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIM 699



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 4/204 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+  L +  K+     V   M   G     +TF+ ++  L R  ++  A  ++E M 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMS 208

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V+PD T +  L+  +  +G++ A   V  +M E    A   T + L+ G C+ GRVE
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDTELFGS 283
           +A   +++ + DG      TY   +  L +  +   A+K   VMV  G D  + T  +  
Sbjct: 269 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT--YNI 326

Query: 284 LGSKLIGLERFNEANFILKEMNKR 307
           + + L    +  EA  IL +M  R
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDR 350



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 79/197 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TL+  LC+  ++  A+ +++ M+  G      TF  ++        +E A  +
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E+  S      N L+  YC  G +    G +++   +    D  TY+  V G C+
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 298

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V  A  ++  MV +G      TY  V+  L + G   +A   +     R    D   
Sbjct: 299 NDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITT 358

Query: 281 FGSLGSKLIGLERFNEA 297
           F +L + L    R  EA
Sbjct: 359 FNTLIAALCTGNRLEEA 375



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 2/149 (1%)

Query: 120 DEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           D+A+ ++    +  FG+ A  + ++ +L+VL  G +M+    +   M    + PD+  +N
Sbjct: 126 DDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFN 185

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+ A C    +     +L++M    +  D  T+  L+ G    G +E A  +  RM++ 
Sbjct: 186 TLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM 245

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G S    T   ++    +LG    A+ ++
Sbjct: 246 GCSATKVTVNVLINGYCKLGRVEDALGYI 274


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 5/256 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L T   + +++ + R  T  G  PD  T   ++ L+NA     D      L  + 
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYT---FNILINALCKVGDPHLALRLFEEM 417

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKS-AYDTLIGRLCKLKKI 119
               C     T+N + +   SL  L      L  ++  G PR +  Y+T+I  LCK  +I
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +EA  V D M   G   +AITF+ ++  L + K++++A+ L+  M    + P+   YN +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 537

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           LT YC +G++   + +L+ M       D  TY  L+ G C+AGR + A  +LR M   G 
Sbjct: 538 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 597

Query: 240 SVLYSTYAHVMGALLR 255
                 Y  V+ +L R
Sbjct: 598 RPTPKAYNPVLQSLFR 613



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 5/306 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L++ L     +  +VL+    +  G  PDE T   +  L+     E  +E    +  + 
Sbjct: 186 TLMKALCRAHQVRTAVLMLEEMSSRGVAPDETT---FTTLMQGFVEEGSIEAALRVKARM 242

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSD-LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
               C  T  T N + N    L  + D L      +  GF P +  Y+T +  LC+   +
Sbjct: 243 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 302

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
             AL+V+D+M + G      T++ +++ L +  ++EEA G++  M +    PD+T +N L
Sbjct: 303 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 362

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           + A C    L     + +++  + +  D  T++ L+   C+ G    A  L   M + G 
Sbjct: 363 IAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGC 422

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +    TY  ++  L  LG   +A+  +           T  + ++   L    R  EA  
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 300 ILKEMN 305
           +  +M+
Sbjct: 483 VFDQMD 488



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 123/283 (43%), Gaps = 6/283 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           +P    Y+ +VN       LE  + +LN+     C     TFN +     T N L    D
Sbjct: 318 DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALD 377

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R +    KG  P    ++ LI  LCK+     ALR+ + M   G     +T++ ++  
Sbjct: 378 LARQVTV--KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++ +A  L++ M+          YN ++   C K  +     V  +M+ + +  +
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A T++ L+ G C+  ++++AF L+ +M+ +G      TY  ++    + G   +A   + 
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  ++D   +G+L + L    R   A  +L+ M  + ++
Sbjct: 556 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 4/171 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++++   CK   I +A  +++ M   GF +  +T+  +++ L +  R + A  +
Sbjct: 529 PNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKV 588

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   + P   AYN +L +   + N+     + ++M E     DA TY  +  G CR
Sbjct: 589 LRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCR 648

Query: 221 AG-RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG---YYAQAVKFVM 267
            G  ++EAF  +  MVD G    +S++  +   LL LG   Y+ +A++ +M
Sbjct: 649 GGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIM 699



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 4/204 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+  L +  K+     V   M   G     +TF+ ++  L R  ++  A  ++E M 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 208

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V+PD T +  L+  +  +G++ A   V  +M E    A   T + L+ G C+ GRVE
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDTELFGS 283
           +A   +++ + DG      TY   +  L +  +   A+K   VMV  G D  + T  +  
Sbjct: 269 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT--YNI 326

Query: 284 LGSKLIGLERFNEANFILKEMNKR 307
           + + L    +  EA  IL +M  R
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDR 350



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 79/197 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TL+  LC+  ++  A+ +++ M+  G      TF  ++        +E A  +
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E+  S      N L+  YC  G +    G +++   +    D  TY+  V G C+
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 298

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V  A  ++  MV +G      TY  V+  L + G   +A   +     R    D   
Sbjct: 299 NDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITT 358

Query: 281 FGSLGSKLIGLERFNEA 297
           F +L + L    R  EA
Sbjct: 359 FNTLIAALCTGNRLEEA 375



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 2/149 (1%)

Query: 120 DEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           D+A+ ++    +  FG+ A  + ++ +L+VL  G +M+    +   M    + PD+  +N
Sbjct: 126 DDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFN 185

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+ A C    +     +L++M    +  D  T+  L+ G    G +E A  +  RM++ 
Sbjct: 186 TLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM 245

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G S    T   ++    +LG    A+ ++
Sbjct: 246 GCSATKVTVNVLINGYCKLGRVEDALGYI 274


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 5/256 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L T+  + +++ + R  T  G  P+  T   ++ L+NA     D      L  + 
Sbjct: 376 TLIVALCTENQLEEALDLARELTVKGLSPNVYT---FNILINALCKVGDPHLAVRLFEEM 432

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGFPRKS-AYDTLIGRLCKLKKI 119
               C     T+N + +   S   L+     L  ++  G P+ +  Y+T+I  LCK ++I
Sbjct: 433 KSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRI 492

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +EA  V D M   G G +AITF+ ++  L   +R+++A  L++ M    + P+   YN +
Sbjct: 493 EEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSI 552

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           LT YC +GN++  + +L+ M       D  TY  L+ G C+A R + A  LLR M   G 
Sbjct: 553 LTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGM 612

Query: 240 SVLYSTYAHVMGALLR 255
                 Y  V+ +L R
Sbjct: 613 KPTPKAYNPVIQSLFR 628



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 130/286 (45%), Gaps = 12/286 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---NTENSLSVLSD 88
           EP    Y  ++N   +  +LE  + ++N+     C     TFN +     TEN L    D
Sbjct: 333 EPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALD 392

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R L    KG  P    ++ LI  LCK+     A+R+ + M   G     +T++ ++  
Sbjct: 393 LARELTV--KGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDN 450

Query: 148 LTRGKRMEEAWGLMEVMKEIRVS--PDLT-AYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L    ++ +A   ++++KE+ VS  P  T  YN ++   C +  +     V  +M+   +
Sbjct: 451 LCSSGKLAKA---LDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGI 507

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           G +A T++ L+ G C A R+++A  L+ +M+ +G      TY  ++    + G  ++A  
Sbjct: 508 GRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAAD 567

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +        ++D   + +L + L    R   A  +L+ M  + +K
Sbjct: 568 ILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMK 613



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 120/292 (41%), Gaps = 5/292 (1%)

Query: 16  SVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNF 75
           +VL+    +     PDE T   +  L+     E  +E    L  + +   C  T+ T N 
Sbjct: 215 AVLMLEEMSSCDVAPDETT---FTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNV 271

Query: 76  ITNTENSLSVLSD-LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           + N    L  + D L      +  GF P +  + T +  LC+   +D AL+V+ +M + G
Sbjct: 272 LINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEG 331

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
                 T+  +++ L     +EEA G++  M +    PD T +N L+ A C +  L    
Sbjct: 332 CEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEAL 391

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            + +++  + L  +  T++ L+   C+ G    A  L   M   G +    TY  ++  L
Sbjct: 392 DLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNL 451

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
              G  A+A+  +           T  + ++   L    R  EA  +  +M+
Sbjct: 452 CSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMD 503



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++++   CK   I +A  ++  M   GF +  +T+  +++ L + +R + A  L
Sbjct: 544 PNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKL 603

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-GVLKKMEEEKLGADARTYDALVLGAC 219
           +  M+   + P   AYN ++ +  F+GN    +  + ++M E     DA TY  +  G C
Sbjct: 604 LRGMRMKGMKPTPKAYNPVIQSL-FRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLC 662

Query: 220 RAG-RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG---YYAQAVKFVM 267
           R G  ++EAF  L  M D+G    +S++  +   LL LG   Y  +A++ ++
Sbjct: 663 RGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLGMDDYLIRAIELIV 714



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 121/291 (41%), Gaps = 6/291 (2%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           L+  ++T+  +   EP    ++ +++A    R   T   +L + +   C    +   F T
Sbjct: 179 LLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSS--CDVAPDETTFTT 236

Query: 78  NTENSLS--VLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
             E  +    +    R  AR+ +    P     + LI   CKL ++ +AL  +      G
Sbjct: 237 LMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADG 296

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
           F    +TF   ++ L +   ++ A  ++ +M +    PD+  Y+ ++   C  G L    
Sbjct: 297 FEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAK 356

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           G++ +M +     D  T++ L++  C   ++EEA  L R +   G S    T+  ++ AL
Sbjct: 357 GIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINAL 416

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            ++G    AV+            D   +  L   L    +  +A  +LKEM
Sbjct: 417 CKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEM 467



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 110/259 (42%), Gaps = 16/259 (6%)

Query: 46  GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSA 105
           GHE  L  V+  +   AR   F+ A  F+ ++N  +   V ++                 
Sbjct: 120 GHEVGLGLVQSFIGSYARLQLFDDA--FDLVSNQLDMFGVQAN--------------TEV 163

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+  L +  KI         M+  G     +TF+ ++  L R ++   A  ++E M 
Sbjct: 164 YNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMS 223

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V+PD T +  L+  +  +G++ A   +  +M E      + T + L+ G C+ GRV 
Sbjct: 224 SCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVG 283

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A   +++ + DG      T++  +  L + G+   A+K + +      + D   + ++ 
Sbjct: 284 DALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVI 343

Query: 286 SKLIGLERFNEANFILKEM 304
           + L       EA  I+ +M
Sbjct: 344 NCLCNNGELEEAKGIVNQM 362


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 16/268 (5%)

Query: 27  GAFPDEP--TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           G F   P   +  Y +L++       L        +   D CF T  T+  +      + 
Sbjct: 245 GVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVL------VC 298

Query: 85  VLSDLCRTLARL-------DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
            L +  R L  L       ++G  P    Y  LI  LCK  ++DEAL++++ M E G   
Sbjct: 299 ALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAP 358

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S + F+ ++    +   ME+A G++ +M+  +V P++  YN L+  +C   ++     +L
Sbjct: 359 SVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALL 418

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            KM E KL  D  TY+ L+ G C  G V+ A  L R M+ DG S    T+   M  L R+
Sbjct: 419 NKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRM 478

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           G   +A + +     + +K +   + +L
Sbjct: 479 GRVGEAHQILESLKEKHVKANEHAYTAL 506



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 103/216 (47%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D  FP    Y  L+  LC+  +  EAL +   M E G   +  T+  ++  L +  RM
Sbjct: 282 REDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRM 341

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  ++  M E  V+P +  +N L+ +YC +G +    GVL  ME +K+  + RTY+ L
Sbjct: 342 DEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNEL 401

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G CR   ++ A  LL +MV+   S    TY  ++  L  +G    A +   +      
Sbjct: 402 ICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGF 461

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             D   F +    L  + R  EA+ IL+ + ++ +K
Sbjct: 462 SPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVK 497



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 118/275 (42%), Gaps = 2/275 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y  L++    E  ++    +LN+        +   FN +  +     ++ D   
Sbjct: 322 EPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVG 381

Query: 92  TLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  ++  K  P    Y+ LI   C+ K +D A+ +++ M E       +T++ ++  L 
Sbjct: 382 VLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLC 441

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               ++ A  L  +M     SPD   +N  +   C  G +     +L+ ++E+ + A+  
Sbjct: 442 EVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEH 501

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
            Y AL+ G C+AG++E A  L +RM+ +       T+  ++  L + G    A+  V   
Sbjct: 502 AYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDM 561

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              D+K     +  L  +++    F+ AN IL  +
Sbjct: 562 AKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRL 596



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 5/171 (2%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           + R + G P    Y +L+   C+   ++ A  V  +M       +A+++  ++  L    
Sbjct: 215 ILRCEPG-PDLFTYTSLVLGYCRNDDVERACGVFCVMPRR----NAVSYTNLIHGLCEAG 269

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           ++ EA      M+E    P +  Y  L+ A C  G       +  +M E     +  TY 
Sbjct: 270 KLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYT 329

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            L+   C+ GR++EA  +L  MV+ G +     +  ++G+  + G    AV
Sbjct: 330 VLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAV 380



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 35/187 (18%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           + AY  LI   CK  KI+ A  +   M       ++ITF+ ++  L +  ++++A  L+E
Sbjct: 500 EHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVE 559

Query: 163 VMKEIRVSPDLTAYNYL-----------------------------------LTAYCFKG 187
            M +  V P L  YN L                                   + AYC +G
Sbjct: 560 DMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQG 619

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            L     ++ K++ E +  D+  Y+ L+      G ++ AF +LRRM   G    Y TY+
Sbjct: 620 RLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYS 679

Query: 248 HVMGALL 254
            +M  L+
Sbjct: 680 ILMKHLV 686



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 64/155 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  LI  LCK+ +++ A  +   M EGG   S I  + +LS   +     EA  L
Sbjct: 737 PNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTL 796

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E      L +Y  L+     + N      V   +       D   +  L+ G  +
Sbjct: 797 LDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAK 856

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G V++   LL  M  +G  +   TY+ +M  L R
Sbjct: 857 TGYVDQCSELLNLMEKNGCRLHPETYSMLMQELNR 891



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 87/223 (39%), Gaps = 34/223 (15%)

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM---KEIRVSPD 172
           L++++ A    D   +  F LS  +++ +L  L+R   ++E   L + M       V P+
Sbjct: 129 LRRMNTAAAAADHQHQLAFKLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPN 188

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR------------ 220
           L   N +L +YC  GN+        ++   + G D  TY +LVLG CR            
Sbjct: 189 LITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFC 248

Query: 221 -------------------AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
                              AG++ EA     RM +DG      TY  ++ AL   G   +
Sbjct: 249 VMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELE 308

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           A+        R  + +   +  L   L    R +EA  +L EM
Sbjct: 309 ALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEM 351



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 8/169 (4%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEA-LRVVDIM-AEGGFGLSAITFHPILSVLTRGKRMEEA 157
           FP     +T++   CKL  +  A L  V I+  E G  L   T+  ++    R   +E A
Sbjct: 186 FPNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDL--FTYTSLVLGYCRNDDVERA 243

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            G+  VM       +  +Y  L+   C  G L        +M E+      RTY  LV  
Sbjct: 244 CGVFCVMPR----RNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCA 299

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            C +GR  EA  L   M + G      TY  ++  L + G   +A+K +
Sbjct: 300 LCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKML 348



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 49/262 (18%), Positives = 106/262 (40%), Gaps = 42/262 (16%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL---SDL 89
           P    Y++L+      + ++    LLNK           T+N + +    + V+   S L
Sbjct: 393 PNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRL 452

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL------------- 136
            R + R D   P +  ++  +  LC++ ++ EA ++++ + E                  
Sbjct: 453 FRLMIR-DGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYC 511

Query: 137 ----------------------SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
                                 ++ITF+ ++  L +  ++++A  L+E M +  V P L 
Sbjct: 512 KAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLH 571

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            YN L+     + +    + +L ++       +  TY A +   C  GR+EEA  ++ ++
Sbjct: 572 TYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKI 631

Query: 235 VDDG---QSVLYSTYAHVMGAL 253
            ++G    S +Y+   +  G +
Sbjct: 632 KNEGVLLDSFIYNLLINAYGCM 653



 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 2/173 (1%)

Query: 118 KIDEALRVV--DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
           KID  +  V  + MAE G   +  T+  +++ L +  R+  A+ L   M+E  +SP    
Sbjct: 717 KIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEII 776

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           +N LL++ C  G       +L  M E    A   +Y  L+ G       E+A  +   ++
Sbjct: 777 HNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLL 836

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
             G +     +  ++  L + GY  Q  + + +      +L  E +  L  +L
Sbjct: 837 RCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQEL 889


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 129/283 (45%), Gaps = 8/283 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PD+   A Y+ L++     +D       L +  ++ C  T  T+  I +        
Sbjct: 40  GCVPDD---AIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRT 96

Query: 87  SDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            D  + L  + DKG  P    Y+ ++  LC+ +K+DEA ++++ MA  G+    +T++  
Sbjct: 97  KDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSF 156

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L +  R++EA   +  M    V+PD+ +Y  ++   C  G+L + S +L +M     
Sbjct: 157 IKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGC 213

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY +L+ G C+ G VE A  LL  M+  G       Y  ++GAL RLG+  +A  
Sbjct: 214 TPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAED 273

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++    R    D   + +    L   ER  +A  +   M +R
Sbjct: 274 MLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVER 316



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 122/265 (46%), Gaps = 1/265 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ +V     ER L+  + +L + A    F    T+N           + +  + 
Sbjct: 113 PNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKF 172

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           LAR+    P   +Y T+I  LCK   +D A R++D M   G     +T+  ++    +G 
Sbjct: 173 LARMPVT-PDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGG 231

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
            +E A GL++ M ++   P++ AYN LL A    G++     +L +ME      D  +Y+
Sbjct: 232 EVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYN 291

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           A + G C+A RV++A  +  RMV+ G +   S+Y+ ++  L +      A+  V     +
Sbjct: 292 ACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREK 351

Query: 273 DIKLDTELFGSLGSKLIGLERFNEA 297
              +D  L+  L   L    RF+EA
Sbjct: 352 YQIVDILLYTVLLDGLCKGGRFDEA 376



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 2/166 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S+Y  L+  LCK K++D+A+ +V+   E    +  + +  +L  L +G R +EA  L
Sbjct: 320 PNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACAL 379

Query: 161 M-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             +V+ E    PD+  YN +L ++C +  +     + K+M E     +  T++ LV G C
Sbjct: 380 FSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNC-CNVVTWNILVHGLC 438

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
              R+ +A  +L  MVD+G    + TY  ++ A+ + G  A A++ 
Sbjct: 439 VDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALEL 484



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 100/216 (46%), Gaps = 12/216 (5%)

Query: 29  FPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TEN 81
            P  P    Y  ++N      DL++   +L++     C     T++ + +        E 
Sbjct: 176 MPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVER 235

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           ++ +L  + +   R     P   AY++L+G L +L  I +A  ++  M   GF    +++
Sbjct: 236 AMGLLDSMLKLGCR-----PNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSY 290

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           +  +  L + +R+++A  + + M E   +P+ ++Y+ L+   C K  L     ++++  E
Sbjct: 291 NACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQARE 350

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
           +    D   Y  L+ G C+ GR +EA  L  +++D+
Sbjct: 351 KYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDE 386



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 13/209 (6%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++   CK ++ID+AL++   M E     + +T++ ++  L    R+ +A  ++  M 
Sbjct: 396 YNVMLDSHCKRRQIDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMV 454

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +    PD   Y  L+ A C  G   A   + ++  +     D  TY AL+ G       E
Sbjct: 455 DEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAE 514

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG-SL 284
           EA++L  ++     + +   YA      L L  + + ++        D++ +   FG  +
Sbjct: 515 EAYLLFTKLDVALWNAMILGYAENGSGDLGLKLFVELIE-------SDVEPNARTFGKEI 567

Query: 285 GSKLIGLERFNEANFILKEMNKRDLKMGF 313
             KL+  E   +A  +      R +K GF
Sbjct: 568 SGKLVKAESLGKARGLF----DRAVKGGF 592



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 72/166 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+  LC+  ++++A +++  M E G       ++ ++S  ++ K   +A+  
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +    P +  Y  ++   C  G       +L +M ++    +  TY+ +V G C 
Sbjct: 68  LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             +++EA  +L  M   G      TY   +  L +     +A KF+
Sbjct: 128 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFL 173


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 32/234 (13%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  L+  LCK +++DEA+ +V+ MAE G   + +T++ I++   R +R++EA G ME M 
Sbjct: 112 YSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMV 171

Query: 166 EIRVSPDLTAYNYLLTAYC-------------------FKGNLTATSGVLKKM------- 199
                PD+  Y  L+  +C                   F  ++   S V+  +       
Sbjct: 172 AEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLR 231

Query: 200 ------EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
                 EE      A TY++L+ G CRAG ++EA  LL +MVDD  +    TY  +M A 
Sbjct: 232 DAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAF 291

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++G    A +         +  D   F SL   L G  R  +A  +L+E+ +R
Sbjct: 292 CKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR 345



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 10/287 (3%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           T+ G  PD  T +   D +  AG  RD   +   ++      C  TA T+N +       
Sbjct: 206 TRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS------CAPTAITYNSLIGGYCRA 259

Query: 84  SVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
             + +  R L ++  DK  P    Y TL+   CK+ ++D+A  +   M         +TF
Sbjct: 260 GDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTF 319

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++  L    RME+A  L+E +      P +  YN ++  YC    +     ++     
Sbjct: 320 TSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRS 379

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST--YAHVMGALLRLGYY 259
                +  TY+ LV G CRAGR ++A   L ++  +G     S   YA ++ AL R G  
Sbjct: 380 RGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRT 439

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             AV+F      R        F ++   L    +  +A+ +L+EM K
Sbjct: 440 DDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIK 486



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 17/282 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSV 85
           PT   Y+ ++      R ++     + +   + C     T+  +        +    L +
Sbjct: 142 PTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLEL 201

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           L ++ R      +GF P    Y T+I  LCK  ++ +A   VDI  E     +AIT++ +
Sbjct: 202 LGEVTR------RGFTPDIVTYSTVIDGLCKAGRLRDA---VDIFEEMSCAPTAITYNSL 252

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    R   M+EA  L+  M + + +PD+  Y  L++A+C  G L     + ++M   KL
Sbjct: 253 IGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKL 312

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  T+ +LV G C  GR+E+A  LL  +   G      TY  V+    +     +A +
Sbjct: 313 SPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEE 372

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            V     R    +T  +  L +      R ++A   L ++N 
Sbjct: 373 LVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNS 414



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 9/225 (4%)

Query: 67  FNTANTFNFITNTE--NSLSV---LSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKI 119
            N A+  +F+T T+  + LS    L D  + L  +   +  P  +    ++  LC   ++
Sbjct: 31  MNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRV 90

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           D+A  +V+ M   G   +AIT+  ++  L + +R++EA  L+E M E   +P +  YN +
Sbjct: 91  DDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSI 150

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +T +C    +    G +++M  E    D  TY AL+ G C++  V     LL  +   G 
Sbjct: 151 ITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGF 210

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFG 282
           +    TY+ V+  L + G    AV     M C    I  ++ + G
Sbjct: 211 TPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGG 255



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 5/188 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ +IG LC+  ++  AL V   M +       +T+  ++  L++ +R+ +A  +
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMNDA-HPPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M   R  PD T    ++ + C    +     ++++M    + A+A TY ALV G C+
Sbjct: 62  LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 121

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGG--RDIKL 276
             R++EA  L+  M + G +    TY  ++    R     +A  F+  MV  G   DI  
Sbjct: 122 CERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIIT 181

Query: 277 DTELFGSL 284
            T L G  
Sbjct: 182 YTALIGGF 189



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 90/209 (43%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y  L+  L K +++ +A++V+  M          T   ++  L  G R+++
Sbjct: 33  DAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDD 92

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L+E M    ++ +   Y+ L+   C    L     +++ M E        TY++++ 
Sbjct: 93  ARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIIT 152

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G CRA RV+EA   + +MV +G      TY  ++G   +     + ++ +     R    
Sbjct: 153 GFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTP 212

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMN 305
           D   + ++   L    R  +A  I +EM+
Sbjct: 213 DIVTYSTVIDGLCKAGRLRDAVDIFEEMS 241



 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 9/186 (4%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E++L +L ++ R      +G P     Y+ ++   CK  ++ +A  +V      GF  + 
Sbjct: 333 EDALELLEEITR------RGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNT 386

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMK-EIRVSPDLTA-YNYLLTAYCFKGNLTATSGVL 196
           +T++ +++   R  R ++A   ++ +  E    P   A Y  +L A C  G         
Sbjct: 387 VTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFY 446

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           ++M +      A T+  +V   C+A + ++A  LL  M+  G +    T   V+ A  R 
Sbjct: 447 EEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRA 506

Query: 257 GYYAQA 262
           G   +A
Sbjct: 507 GMIQKA 512



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 1/161 (0%)

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++  L R  R+  A G+   M +    PD   Y  L+        L     VL++M   +
Sbjct: 11  VIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSAR 69

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
              D  T   +V   C   RV++A  L+  M+  G +    TY+ ++  L +     +AV
Sbjct: 70  HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAV 129

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             V     R        + S+ +      R +EA+  +++M
Sbjct: 130 ALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQM 170



 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 22/151 (14%)

Query: 74  NFITNTENSLSVLSDLCRT------LARLDK----GFPRKSA---YDTLIGRLCKLKKID 120
            F+ NT     +++  CR       L  LD+    G P  ++   Y  ++  LC+  + D
Sbjct: 381 GFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTD 440

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A++  + M + G+  +A TF  ++  L +  + ++A  L+E M +   +P     + ++
Sbjct: 441 DAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVV 500

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
           +AYC        +G+++K +E  L ++ R Y
Sbjct: 501 SAYC-------RAGMIQKADE--LASELRLY 522


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 8/283 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PD+   A Y+ L++     +D       L +  ++ C  T  T+  I +        
Sbjct: 72  GCVPDD---AIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERT 128

Query: 87  SDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            D  + L  + DKG  P    Y+ ++  LC+ +K+DEA ++++ MA  G+    +T++  
Sbjct: 129 RDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSF 188

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L +  R++EA   +  M    V+PD+ +Y  ++   C  G+L + S +L  M     
Sbjct: 189 IKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGC 245

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY +L+ G C+ G VE A  LL  M+  G       Y  ++GAL RLG+  +A  
Sbjct: 246 TPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAED 305

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++    R    D   + +    L   ER  +A  +   M +R
Sbjct: 306 MLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVER 348



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 1/222 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ +V     ER L+  + +L + A    F    T+N           + +  + 
Sbjct: 145 PNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKF 204

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           LAR+    P   +Y T+I  LCK   +D A R++D M+  G     +T+  ++    +G 
Sbjct: 205 LARMPVT-PDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGG 263

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
            +E A GL++ M ++   P++ AYN LL A    G++     +L +ME      D  +Y+
Sbjct: 264 EVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYN 323

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           A + G C+A RV++A  +  RMV+ G +   S+Y+ ++  +L
Sbjct: 324 ACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDIL 365



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 17/256 (6%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
            +  G  PD  T   Y  L++      ++E    LL+   +  C      +N +    + 
Sbjct: 240 MSNRGCTPDVVT---YSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHR 296

Query: 83  LSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  +      L  +++ GF P   +Y+  I  LCK +++ +A  V D M E G   +A +
Sbjct: 297 LGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASS 356

Query: 141 FH----------PILSVLTRGKRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
           +            +L  L +G R +EA  L  +V+ E    PD+  YN +L ++C +  +
Sbjct: 357 YSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQI 416

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                + K+M E+    +  T++ LV G C   R+ +A  +L  MVD+G    + TY  +
Sbjct: 417 DKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTL 475

Query: 250 MGALLRLGYYAQAVKF 265
           + A+ + G  A A++ 
Sbjct: 476 VDAMCKCGKSAAALEL 491



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 83/199 (41%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+ +L +  + D+A  V   M +      A TF  +L  L R  ++E+A  L+  MK
Sbjct: 10  YNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMK 69

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E+   PD   YN L++ Y    +       L +M +        TY  +V G C+A R  
Sbjct: 70  EMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTR 129

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  LL  M D G S    TY  ++  L       +A K +     R    D   + S  
Sbjct: 130 DAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFI 189

Query: 286 SKLIGLERFNEANFILKEM 304
             L   +R +EA   L  M
Sbjct: 190 KGLCKCDRVDEARKFLARM 208



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G+  +  T++ +L  LTR  R ++A  + + M +    PD   +  LL   C    L   
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L +M+E     D   Y+AL+ G  +A    +AF  L  MV +       TY +++  
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           L +      AVK +     +    +   +  +   L    + +EA  +L+EM  R
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVR 176



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++   CK ++ID+AL++   M E     + +T++ ++  L    R+ +A  ++  M 
Sbjct: 403 YNVMLDSHCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMV 461

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +    PD   Y  L+ A C  G   A   + ++  +     D  TY AL+ G       E
Sbjct: 462 DEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAE 521

Query: 226 EAFVLLRRMVD 236
           EA++L  ++V+
Sbjct: 522 EAYLLFTKLVE 532



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 3/143 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL-C 90
           EP   +Y+ ++++    R ++    +  +     C N   T+N + +       LSD   
Sbjct: 397 EPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVV-TWNILVHGLCVDDRLSDAET 455

Query: 91  RTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
             L  +D+GF P    Y TL+  +CK  K   AL + +   +GG     +T+  +++ L 
Sbjct: 456 MLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLV 515

Query: 150 RGKRMEEAWGLMEVMKEIRVSPD 172
                EEA+ L   + E R  PD
Sbjct: 516 HENMAEEAYLLFTKLVERRWVPD 538


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 5/266 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L  +  + ++  + R  T  G  PD  T   ++ L+       +      L  + 
Sbjct: 391 TLISTLCKENQVEEATELARVLTSKGILPDVCT---FNSLIQGLCLTNNHRLAMELFEEM 447

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKSA-YDTLIGRLCKLKKI 119
               C     T+N + ++  S   L +    L  ++  G  R    Y+TLI   CK K+I
Sbjct: 448 KTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRI 507

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +EA  + D M   G   + +T++ ++  L + +R+EEA  LM+ M    + PD   YN L
Sbjct: 508 EEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSL 567

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           LT +C  G++   + +++ M       D+ TY  L+LG  +AGRVE A  LLR +   G 
Sbjct: 568 LTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGM 627

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKF 265
            +   TY  V+ AL R    ++AV+ 
Sbjct: 628 VLAPQTYNPVIKALFREKRTSEAVRL 653



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 1/152 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L +GF P    Y++LI  LCKL +++EA+ +++ M    F  + +T++ ++S L +  ++
Sbjct: 343 LQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQV 402

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           EEA  L  V+    + PD+  +N L+   C   N      + ++M+ +    D  TY+ L
Sbjct: 403 EEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNML 462

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +   C  GR+EEA  LL+ M   G S    TY
Sbjct: 463 IDSLCSRGRLEEALSLLKEMESSGCSRNVVTY 494



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 11/267 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRA-RDCCFNTANTFNFITNT---ENSLSVLS 87
           +P    Y+ L+       ++E    +LN+   RD   NT  T+N + +T   EN +   +
Sbjct: 348 DPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTV-TYNTLISTLCKENQVEEAT 406

Query: 88  DLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           +L R L    KG  P    +++LI  LC       A+ + + M   G      T++ ++ 
Sbjct: 407 ELARVLT--SKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLID 464

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L    R+EEA  L++ M+    S ++  YN L+  +C    +     +  +ME + +  
Sbjct: 465 SLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISR 524

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  TY+ L+ G C+  RVEEA  L+ +M+ +G      TY  ++    R G   +A   V
Sbjct: 525 NVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIV 584

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLER 293
                   + D+  +G+L   ++GL +
Sbjct: 585 QTMTSNGCEPDSVTYGTL---ILGLSK 608



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 115/280 (41%), Gaps = 3/280 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+S  Y++++   G +    ++R +L +     C     TF  +  +     +  +    
Sbjct: 103 PSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAV 162

Query: 93  LARLDKGFPRK---SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           +  +++ F  K     Y+ L+  L    K+     V   M   G      TF+ ++  L 
Sbjct: 163 VDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALC 222

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R  ++  A  +ME M    +SPD   +  L+  +  +GN+     + ++M      +   
Sbjct: 223 RAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNV 282

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           T + LV G C+ GR+EE    +  M ++G      T+  ++  L R+G+   A++ + V 
Sbjct: 283 TVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVM 342

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                  D   + SL   L  L    EA  IL +M  RD 
Sbjct: 343 LQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDF 382



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 82/184 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  + TL+    +   ++ ALR+ + M   G   S +T + ++    +  R+EE    
Sbjct: 244 PDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSF 303

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M      PD   +N L+   C  G++     +L  M +E    D  TY++L+ G C+
Sbjct: 304 IDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCK 363

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G VEEA  +L +M+    S    TY  ++  L +     +A +   V   + I  D   
Sbjct: 364 LGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCT 423

Query: 281 FGSL 284
           F SL
Sbjct: 424 FNSL 427



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 6/232 (2%)

Query: 70  ANTFNFITNT---ENSLSVLSDL-CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
           A T+NF+ N     N L ++  +  R ++R  K  P  + ++ LI  LC+  +I  A+ +
Sbjct: 176 AFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIK--PDVTTFNILIKALCRAHQIRPAILM 233

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           ++ M   G      TF  ++        M  A  + E M            N L+  YC 
Sbjct: 234 MEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCK 293

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           +G +      + +M  E    D  T+++LV G CR G V+ A  +L  M+ +G      T
Sbjct: 294 EGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFT 353

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           Y  ++  L +LG   +AV+ +     RD   +T  + +L S L    +  EA
Sbjct: 354 YNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEA 405


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 105/207 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   C++  +DEALR+ ++M+E G   + IT++ IL  L  G R+ +A  L
Sbjct: 307 PNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANIL 366

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E ++ PD    N L+ AYC  G++ +   V  KM    L  D  TY AL+ G C+
Sbjct: 367 LNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCK 426

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A  +++A  LL  M+D G S  Y TY+ ++ +  +       +K       R + +D  +
Sbjct: 427 AKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSV 486

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + +L  +   +E+ + A  +L  M  +
Sbjct: 487 YRALIRRFCKIEKIDCAQRVLGLMKDK 513



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 3/213 (1%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P   A   L+  L K +  D   ++   M + G   +   ++ +L    +   +E+A
Sbjct: 166 GFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKA 225

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++  M+   V PDL  YN L++ YC KG       V  +ME   +  D  TY++L+ G
Sbjct: 226 EKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYG 285

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            CR GR+ EA  L R + D   +  + TY  ++    R+    +A++   V   + +   
Sbjct: 286 FCREGRMREAVQLFRDIKDVTPN--HVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPT 343

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              + S+  KL    R  +AN +L EM++R ++
Sbjct: 344 VITYNSILRKLCEGGRLRDANILLNEMSERKIE 376



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 14/251 (5%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSVLSDLCRTL 93
           L+N+   +R  +TV  +  K  +       + +N + +        E +  VLS++    
Sbjct: 177 LLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEM---- 232

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
             L   FP    Y+TLI   CK     EAL V D M   G      T++ ++    R  R
Sbjct: 233 -ELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGR 291

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M EA  L   +K+  V+P+   Y  L+  YC   +L     + + M E+ L     TY++
Sbjct: 292 MREAVQLFRDIKD--VTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNS 349

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++   C  GR+ +A +LL  M +        T   ++ A  ++G    A+K      G  
Sbjct: 350 ILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAG 409

Query: 274 IKLDTELFGSL 284
           +KLD   + +L
Sbjct: 410 LKLDQFTYKAL 420



 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 5/169 (2%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
           C    N +  I +  ++L V   +     +LD+       Y  LI   CK K+ID+A  +
Sbjct: 382 CNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQF-----TYKALIHGFCKAKEIDKAKEL 436

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           +  M + GF  S  T+  ++    + +  E    L + +    +  D++ Y  L+  +C 
Sbjct: 437 LFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCK 496

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
              +     VL  M+++ +  D+  Y +L  G  + G+V     +L  M
Sbjct: 497 IEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEM 545


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 11/267 (4%)

Query: 51  LETVRYLLNKRARDCCFNTANTFNFITNT-------ENSLSVLSDLCRTLARLDKGFPRK 103
           L + R LL    RD       T+N +          E +L V+ D  R         P  
Sbjct: 135 LPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAG----CAPNV 190

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
             Y+TL+   C+  ++D A R+V +M EGG   S +TF+ +++ L +  RME+A  + + 
Sbjct: 191 VTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDE 250

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    ++PD  +YN L++ YC  G L     V  +M ++ +  D  T+ +L+   CRAG 
Sbjct: 251 MAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGN 310

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           +E A  L+ +M + G  +   T+  ++    R G+   A+  +       I+     +  
Sbjct: 311 LERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNV 370

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           L +    L R +EA  ++ EM  + +K
Sbjct: 371 LINGYCKLGRMDEARELIHEMEAKGMK 397



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 5/230 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   ++ +VN       +E  R + ++ AR+       ++N + +       L +    
Sbjct: 223 PSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAV 282

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
            A +  KG  P    + +LI  +C+   ++ A+ +V  M E G  ++  TF  ++    R
Sbjct: 283 FAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCR 342

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              +++A   M+ M+E R+ P +  YN L+  YC  G +     ++ +ME + +  D  T
Sbjct: 343 NGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVT 402

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLG 257
           Y  ++ G C+ G  + AF L R+M+  G    ++ YS+    +    RLG
Sbjct: 403 YSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLG 452



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CKL ++DEA  ++  M   G     +T+  ILS   +    + A+ L
Sbjct: 363 PSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFEL 422

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V PD   Y+ L+   C +  L     + +KM +  L  D  TY  L+ G C+
Sbjct: 423 NRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCK 482

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G V++A  L   M+  G
Sbjct: 483 EGNVQKALSLHDEMIKKG 500



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 99/213 (46%), Gaps = 4/213 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRMEEAWG 159
           P   AY+ ++  L     +  A R++  M   G   +  T++ ++  L  RG+R EEA G
Sbjct: 118 PSLLAYNAVLLALSD-ASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQR-EEALG 175

Query: 160 LM-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
           ++ + M+    +P++  YN L+ A+C  G + A   ++  M E  +     T++ +V G 
Sbjct: 176 VVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGL 235

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+AGR+E+A  +   M  +G +    +Y  ++    + G   +A+        + +  D 
Sbjct: 236 CKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDV 295

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
             F SL   +        A  ++ +M +R L+M
Sbjct: 296 VTFTSLIHAMCRAGNLERAVALVGQMRERGLRM 328



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++   CK+   D A  +   M + G    AIT+  ++  L   +R+ +A  L
Sbjct: 398 PDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACEL 457

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M ++ + PD   Y  L+  +C +GN+     +  +M ++ +  D  TY  L+ G  +
Sbjct: 458 FEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSK 517

Query: 221 AGRVEEAFVLLRRM 234
           + R +EA  LL ++
Sbjct: 518 SARTKEAQRLLFKL 531



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 17/172 (9%)

Query: 86  LSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           L D C    + L  G  P +  Y TLI   CK   + +AL + D M + G     +T+  
Sbjct: 451 LGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSV 510

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL---------------LTAYCFKGN 188
           ++  L++  R +EA  L+  +      PD   Y  L               L  +  KG 
Sbjct: 511 LIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGL 570

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
           +     V + M +     D   Y  L+ G CR G + +A    ++++  G S
Sbjct: 571 MNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFS 622


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 130/296 (43%), Gaps = 5/296 (1%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V R    +G  P+  T   Y+ L++     R +     L+       C     T+  + +
Sbjct: 248 VLREMLDAGCVPNLVT---YNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLID 304

Query: 79  TENSLSVLSDLCRTLARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
               +  + D C  LA + DKG  P    Y+ LI  LCK  ++DE++ ++     GG   
Sbjct: 305 GLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKP 364

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             +T+  ++  L R  R++EA  L+  +K     PD+  Y+ L+   C  G +     + 
Sbjct: 365 DVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLY 424

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           + M  +   AD  TY  L+ G C+AGRV+EA +LL RMV  G      TY  ++  L  L
Sbjct: 425 EVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDL 484

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
            +  +A++ V      +       +  L   +  +ER + A  +L++   R +  G
Sbjct: 485 NHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAG 540



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 7/265 (2%)

Query: 39  DDLVNAAGHERDLETVRYLLNKRARDC---CFNTANTFNFITN---TENSLSVLSDLCRT 92
           D L      ER +   + +L++R+ D    C     T++ + +     N +S   +L  +
Sbjct: 157 DGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLES 216

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           + +     P    Y  L+  LCK  K+  A  V+  M + G   + +T++ +L  L R +
Sbjct: 217 M-KARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRAR 275

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           R+ +A  LM  M     +P++  Y  L+   C  G +     +L  M ++    D   Y+
Sbjct: 276 RVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYN 335

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
            L+ G C+A +V+E+  LLRR V  G      TY+ V+  L R     +A + ++    R
Sbjct: 336 MLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSR 395

Query: 273 DIKLDTELFGSLGSKLIGLERFNEA 297
               D  L+ +L   L    + +EA
Sbjct: 396 GCPPDVILYSTLIDGLCKAGKVDEA 420



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 134/317 (42%), Gaps = 16/317 (5%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +LL  L  +  + Q++ +       G    EP    Y+ L++      + +  + L    
Sbjct: 84  ALLSGLWKEKRLDQALAILHEMRDHGC---EPNVVTYNSLIDGLCKNNEPDRAQELFEHM 140

Query: 62  ARDCCFNTANTFNFITN-------TENSLSVLSDLC--RTLARLDKGFPRKSAYDTLIGR 112
               C  +  T+N + +        E ++++  ++   R+    D+  P    Y  LI  
Sbjct: 141 KSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDG 200

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LCK  ++ +A+ +++ M   G     IT+  ++  L +  ++  AW ++  M +    P+
Sbjct: 201 LCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPN 260

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           L  YN LL   C    ++    +++ M       +  TY  L+ G C+ GRV++A  +L 
Sbjct: 261 LVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLA 320

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIG 290
            M+D G +     Y  ++  L +     +++  +   V GG  IK D   + S+   L  
Sbjct: 321 DMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGG--IKPDVVTYSSVIYGLCR 378

Query: 291 LERFNEANFILKEMNKR 307
             R +EA  +L  +  R
Sbjct: 379 SNRLDEACRLLLYVKSR 395



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 5/153 (3%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI  LCK  ++DEA  ++  M   G   S +T++ ++  L     ++EA  L+E M+
Sbjct: 439 YSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEME 498

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA-----DARTYDALVLGACR 220
               +P    YN L+   C    + +   +L++ +   + A     D   Y +L+ G C+
Sbjct: 499 RSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCK 558

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           AGRV EA    + M+D+G    + TY+ ++  L
Sbjct: 559 AGRVAEALDYFQEMIDNGVIPDHITYSILLEGL 591



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 112/262 (42%), Gaps = 22/262 (8%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLD----------KGFPRKSA-YDTLIGRLC 114
           CF+   + N + N      ++  LC+    +D           G    +  Y  L+  L 
Sbjct: 31  CFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLW 90

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           K K++D+AL ++  M + G   + +T++ ++  L +    + A  L E MK +  SP + 
Sbjct: 91  KEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMV 150

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKM-------EEEKLGADARTYDALVLGACRAGRVEEA 227
            YN LL      G L     + ++M        +++   +  TY  L+ G C+A RV +A
Sbjct: 151 TYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQA 210

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLG 285
             LL  M   G S    TY  ++  L +    A A + +  M+  G    L T  + SL 
Sbjct: 211 VELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT--YNSLL 268

Query: 286 SKLIGLERFNEANFILKEMNKR 307
             L    R ++A  ++++M  R
Sbjct: 269 HGLCRARRVSDALALMRDMTCR 290



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 9/142 (6%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC L  +DEA+ +V+ M       SA+T++ ++  + R +R++ A  L
Sbjct: 469 PSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVL 528

Query: 161 MEVMKEIRVSP-----DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +E  K   V+      D  AY+ L+   C  G +       ++M +  +  D  TY  L+
Sbjct: 529 LEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILL 588

Query: 216 LGACRAGRVEEAFVLLRRMVDD 237
            G  ++  + E    LR +V D
Sbjct: 589 EGLKKSKDLHE----LRHLVLD 606



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 63/165 (38%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   C+  +ID+A R  D M       +      ++  L + KR  +A   
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+   +  D   Y  LL+    +  L     +L +M +     +  TY++L+ G C+
Sbjct: 67  FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
               + A  L   M     S    TY  ++  L R G   +A+  
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 171


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 123/283 (43%), Gaps = 11/283 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN--TFNFITNTENSLSVLSDLC 90
           P    Y  L+N       ++  R L+ +  R  C    N  T+N   +     S+ ++ C
Sbjct: 105 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 164

Query: 91  RTLARLDKGF----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
             +  L  G     P    + TLI  LCK  +IDEA  V D M  GG+  + IT++ +++
Sbjct: 165 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 224

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK--- 203
            L +  +ME A  ++E M +  V+PD+  Y+ L+ A+C    +     +L  M       
Sbjct: 225 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 284

Query: 204 --LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             L  D  T++ L+ GAC+AG  E+A  L   MV         T+  ++  L + G    
Sbjct: 285 NVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEA 344

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           A   + + G   +  +   + +L   L    R  EA   L+EM
Sbjct: 345 ARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEM 387



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 125/292 (42%), Gaps = 15/292 (5%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLD 97
           L  A    R LE  R    + ARD    T  T+N I N     N L    +L   L  ++
Sbjct: 11  LCRAGDTARALEIFR---GEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL--VE 65

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +G  P    Y+TLI  LCK   ++EA R+   M+  G   + +T+  +++ L +  R++E
Sbjct: 66  RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDE 125

Query: 157 AWGLMEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE---KLGADARTY 211
           A  L++ M  K   V P++  YN  L   C K ++TA +  L +   +   ++  D  T+
Sbjct: 126 ARELIQEMTRKSCDVLPNIITYNSFLDGLC-KQSMTAEACELMRSLRDGSLRVSPDTVTF 184

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
             L+ G C+ G+++EA  +   M+  G      TY  ++  L +     +A   +     
Sbjct: 185 STLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVD 244

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
           + +  D   +  L        R +EA  +L  M  R       + D    N+
Sbjct: 245 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNI 296



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 84/188 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  ++ LI   CK    ++A  + + M         +TF  ++  L +  ++E A  +
Sbjct: 289 PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDI 348

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M  + V P++  YN L+   C  G +      L++M       D+ TY +LV   CR
Sbjct: 349 LDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCR 408

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A R ++A  L+  +   G      TY  ++  L + G   QA+  +    G+  + D+  
Sbjct: 409 ASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFT 468

Query: 281 FGSLGSKL 288
           F +  S L
Sbjct: 469 FAACFSGL 476



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI  LCK  +++ A  ++D+M   G   + +T++ ++  L +  R+EEA   
Sbjct: 324 PDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQF 383

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M      PD   Y  L+ A C          ++ +++      D  TY+ LV G  +
Sbjct: 384 LEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWK 443

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           +G+ E+A  +L  MV  G      T+A     L R G  A  ++ + V
Sbjct: 444 SGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRV 491



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 5/204 (2%)

Query: 106 YDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           Y+ ++  LC+      AL +    MA  G   + +T++ I++ L +   +     L E +
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E    PD+  YN L+ + C  G+L     +   M       +  TY  L+ G C+ GR+
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 225 EEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTEL 280
           +EA  L++ M      VL +  TY   +  L +    A+A + +  +  G   +  DT  
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 183

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F +L   L    + +EA  +  +M
Sbjct: 184 FSTLIDGLCKCGQIDEACSVFDDM 207



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 18/178 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI-------TNTENSLSV 85
           P    Y+ LV+       +E     L +     C   + T+  +       + T+++L +
Sbjct: 359 PNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQL 418

Query: 86  LSDLCRTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           +S+L        K F   P    Y+ L+  L K  K ++A+ V++ M   G    + TF 
Sbjct: 419 VSEL--------KSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFA 470

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
              S L R   +     L+ V+    + PD T  + +L   C  G L     ++K+ E
Sbjct: 471 ACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKEFE 528


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 117/236 (49%), Gaps = 8/236 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L +      +++    LL++ +R        T+N I N    +  +    + 
Sbjct: 450 PNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKL 509

Query: 93  LARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +  +D  GF P    Y TL+   CK+ ++ +A  ++ IM       + +TF+ +++    
Sbjct: 510 MEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCM 569

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              +E+   L+E M E  + P+ T +N L+  YC K N+ AT+ + K M +  +  D+ T
Sbjct: 570 SGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNT 629

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           Y+ L+ G C+A  ++EA+ L + MV+ G SV  +TY     AL+R G+Y +  KFV
Sbjct: 630 YNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATY----DALIR-GFYKRK-KFV 679



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 118/247 (47%), Gaps = 3/247 (1%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL-DKG-FPRKSAYDTLIGRLCKLKKIDEAL 123
           C+NT +  N + +    L  + +    L ++ D+G FP   +Y  ++   C++ ++D+ L
Sbjct: 239 CWNTVSC-NIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVL 297

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           ++VD +   G       ++ I+ +L +   + EA  L+  M++  V PD   Y  +++ +
Sbjct: 298 KLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGF 357

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C  GN++A   +  +M  +K+  D  TY +++ G C++G++ EA  +   M+  G     
Sbjct: 358 CKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDE 417

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++    + G   +A         + +  +   + +L   L      + AN +L E
Sbjct: 418 VTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHE 477

Query: 304 MNKRDLK 310
           M+++ L+
Sbjct: 478 MSRKGLQ 484



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 72/167 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y T+I   CKL  +  A ++ D M         +T+  ++  + +  +M EA  
Sbjct: 344 FPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEARE 403

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +   M    + PD   Y  L+  YC  G +     V  +M ++ L  +  TY AL  G C
Sbjct: 404 MFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLC 463

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G ++ A  LL  M   G      TY  ++  L ++G   Q VK +
Sbjct: 464 KNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLM 510



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R  K  P    Y ++I  +CK  K+ EA  + + M   G     +T+  ++    +   M
Sbjct: 374 RRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEM 433

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA+ +   M +  ++P++  Y  L    C  G +   + +L +M  + L  +  TY+ +
Sbjct: 434 KEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTI 493

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           V G C+ G +E+   L+  M   G      TY  +M A  ++G  A+A
Sbjct: 494 VNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKA 541



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 1/213 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KG  P +  Y  LI   CK  ++ EA  V + M + G   + +T+  +   L +   +
Sbjct: 409 LVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEI 468

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A  L+  M    + P++  YN ++   C  GN+  T  ++++M+      D  TY  L
Sbjct: 469 DVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTL 528

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   C+ G + +A  LLR M++        T+  +M      G      + +     + I
Sbjct: 529 MDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGI 588

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +   F SL  +            I K M+ R
Sbjct: 589 MPNATTFNSLMKQYCIKNNMRATTEIYKAMHDR 621



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 7/206 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGH-ERDLETVRYLLNKRARDCCFNTAN 71
           I Q+V +      +G +PD  T     D     G   +  E +R +LNKR +     T  
Sbjct: 503 IEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQP----TLV 558

Query: 72  TFNFITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN + N      +L D  R +   L+KG  P  + +++L+ + C    +     +   M
Sbjct: 559 TFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAM 618

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            + G    + T++ ++    + + M+EAW L + M E   S     Y+ L+  +  +   
Sbjct: 619 HDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKF 678

Query: 190 TATSGVLKKMEEEKLGADARTYDALV 215
                + ++M +  L A+   YD  V
Sbjct: 679 VEARKLFEEMRKHGLVAEKDIYDIFV 704



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           C  + I  A++V +   E G   + ++ + +L  L +  ++ EA  L+  M +    PD+
Sbjct: 218 CNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDV 277

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
            +Y  +++ YC  G L     ++ +++ + L  D   Y+ ++L  C+ G V EA  LLR 
Sbjct: 278 VSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRG 337

Query: 234 MVDDG---QSVLYSTYAHVMGALLRLGYYAQAVK 264
           M   G    +V+Y+T   V+    +LG  + A K
Sbjct: 338 MRKWGVFPDNVVYTT---VISGFCKLGNVSAACK 368


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 5/250 (2%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V R    +G  P+  T   Y+ L++     R +     L+       C     T+  + +
Sbjct: 170 VLREMLDAGCVPNLVT---YNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLID 226

Query: 79  TENSLSVLSDLCRTLARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
               +  + D C  LA + DKG  P    Y+ LI  LCK  ++DE++ ++     GG   
Sbjct: 227 GLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKP 286

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             +T+  ++  L R  R++EA  L+  +K     PD+  Y+ L+   C  G +     + 
Sbjct: 287 DVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLY 346

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           + M  +   AD  TY  L+ G C+AGRV+EA +LL RMV  G      TY  ++  L  L
Sbjct: 347 EVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDL 406

Query: 257 GYYAQAVKFV 266
            +  +A++ V
Sbjct: 407 NHLDEAIELV 416



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 90/197 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK  K+  A  V+  M + G   + +T++ +L  L R +R+ +A  L
Sbjct: 146 PDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALAL 205

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M     +P++  Y  L+   C  G +     +L  M ++    D   Y+ L+ G C+
Sbjct: 206 MRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCK 265

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A +V+E+  LLRR V  G      TY+ V+  L R     +A + ++    R    D  L
Sbjct: 266 ADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVIL 325

Query: 281 FGSLGSKLIGLERFNEA 297
           + +L   L    + +EA
Sbjct: 326 YSTLIDGLCKAGKVDEA 342



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 4/213 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P    Y  LI  LCK  ++ +A+ +++ M   G     IT+  ++  L +  ++  
Sbjct: 107 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 166

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           AW ++  M +    P+L  YN LL   C    ++    +++ M       +  TY  L+ 
Sbjct: 167 AWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLID 226

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDI 274
           G C+ GRV++A  +L  M+D G +     Y  ++  L +     +++  +   V GG  I
Sbjct: 227 GLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGG--I 284

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           K D   + S+   L    R +EA  +L  +  R
Sbjct: 285 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSR 317



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 14/183 (7%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           SV+  LCR+  RLD+              P    Y TLI  LCK  K+DEA  + ++M  
Sbjct: 293 SVIYGLCRS-NRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTG 351

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T+  ++  L +  R++EA  L+  M  +   P    YN L+   C   +L  
Sbjct: 352 DGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDE 411

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV-LLRRMVDDGQSVLYSTYAHVM 250
              ++++ME       A TY+ L+ G CR  RV+ A +   + M+D+G    + TY+ ++
Sbjct: 412 AIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILL 471

Query: 251 GAL 253
             L
Sbjct: 472 EGL 474



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 98/210 (46%), Gaps = 1/210 (0%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P    Y++L+  LC+ +++ +AL ++  M   G   + +T+  ++  L +  R+
Sbjct: 175 LDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRV 234

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  ++  M +   +PDL  YN L+   C    +  +  +L++     +  D  TY ++
Sbjct: 235 KDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSV 294

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G CR+ R++EA  LL  +   G       Y+ ++  L + G   +A     V  G   
Sbjct: 295 IYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGC 354

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             D   + +L   L    R +EA+ +L  M
Sbjct: 355 DADVVTYSTLIDGLCKAGRVDEAHLLLARM 384



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 6/209 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LCK  + D A  + + M       S +T++ +L  L R  ++E A  L
Sbjct: 8   PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M + R S D+ ++N L+T  C  G +       +KM +++   +  TY  L+ G C+
Sbjct: 68  FQEMLD-RRSHDVISFNILVTGLCRAGKIETALEFFRKM-DDRCSPNVITYSVLIDGLCK 125

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
           A RV +A  LL  M   G S    TY  ++  L +    A A + +  M+  G    L T
Sbjct: 126 ANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT 185

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKR 307
             + SL   L    R ++A  ++++M  R
Sbjct: 186 --YNSLLHGLCRARRVSDALALMRDMTCR 212



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 2/176 (1%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M + G   + +T++ ++  L +    + A  L E MK +  SP +  YN LL      G 
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L     + ++M + +   D  +++ LV G CRAG++E A    R+M DD  S    TY+ 
Sbjct: 61  LERAMALFQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKM-DDRCSPNVITYSV 118

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           ++  L +    +QAV+ +     R    D   +  L   L    +   A  +L+EM
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREM 174



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y ++I  LC+  ++DEA R++  +   G     I +  ++  L +  +++EA+ L
Sbjct: 286 PDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDL 345

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            EVM       D+  Y+ L+   C  G +     +L +M          TY++L+ G C 
Sbjct: 346 YEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCD 405

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
              ++EA  L+  M     +    TY  ++  + R+
Sbjct: 406 LNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRM 441


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 5/245 (2%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
            T  G  PD  T   Y+ L+      R+      L  +     C     T+N + ++   
Sbjct: 397 LTGKGILPDVCT---YNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCF 453

Query: 83  LSVLSDLCRTLARLD-KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
              L +    L  ++  G  R    Y+TLI   CK K+I EA  + D M   G   +++T
Sbjct: 454 RGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVT 513

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++  L + +R+EEA  LM+ M    + PD   YN LLT +C  G++   + +++ M 
Sbjct: 514 YNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMA 573

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            +    D  TY  L+ G C+AGRVE A  LLR +   G ++    Y  V+ AL R     
Sbjct: 574 SDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSK 633

Query: 261 QAVKF 265
           +AV+ 
Sbjct: 634 EAVRL 638



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 124/258 (48%), Gaps = 8/258 (3%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD----KGF-PRKSAY 106
           E +R++     R+  F    TFN + N    LS    +   L  +D    +GF P    Y
Sbjct: 283 EALRFIEEMSLREGFFPDKYTFNMLVN---GLSKTGHVKHALEVMDMMLREGFDPDIYTY 339

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           ++LI  LCKL ++DEA++V++ M E     + +T++ I+S L +  ++EEA  L  V+  
Sbjct: 340 NSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTG 399

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + PD+  YN L+   C   N T    + K+M+ +    D  TY+ L+   C  G+++E
Sbjct: 400 KGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQE 459

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  LL+ M   G +    TY  ++    +    A+A +       + +  ++  + +L  
Sbjct: 460 ALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLID 519

Query: 287 KLIGLERFNEANFILKEM 304
            L   ER  EA+ ++ +M
Sbjct: 520 GLCKSERVEEASQLMDQM 537



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 122/291 (41%), Gaps = 40/291 (13%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNT---ENSLS-------------VLSDLCRTLAR 95
           E V+ L     RDC  NT  T+N I +T   EN +              +L D+C T   
Sbjct: 354 EAVKVLNQMIERDCSPNTV-TYNTIISTLCKENQVEEATKLALVLTGKGILPDVC-TYNS 411

Query: 96  LDKGF----------------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           L +G                       P +  Y+ LI  LC   K+ EAL ++  M   G
Sbjct: 412 LIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSG 471

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
              + IT++ ++    + KR+ EA  + + M+   VS +   YN L+   C    +   S
Sbjct: 472 CARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEAS 531

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            ++ +M  E L  D  TY++L+   C+AG +++A  +++ M  DG      TY  ++  L
Sbjct: 532 QLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGL 591

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            + G    A K +     + I L    +  +   L   +R  EA  + +EM
Sbjct: 592 CKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREM 642



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 113/244 (46%), Gaps = 6/244 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PDE T   Y+ L+++      L+    LL +     C     T+N + +       +
Sbjct: 436 GCHPDEFT---YNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRI 492

Query: 87  SDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           ++      +++ +G  R S  Y+TLI  LCK ++++EA +++D M   G      T++ +
Sbjct: 493 AEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSL 552

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L+   +   +++A  +++ M      PD+  Y  L+   C  G + A + +L+ ++ + +
Sbjct: 553 LTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGI 612

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR-LGYYAQAV 263
                 Y+ ++    R  R +EA  L R M++  ++    TY  V   L +  G   +AV
Sbjct: 613 NLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAV 672

Query: 264 KFVM 267
            FVM
Sbjct: 673 DFVM 676



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 3/210 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  + T++    +   +D A+RV + M E G  ++ +T + +++   +  R+EEA  
Sbjct: 227 LPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALR 286

Query: 160 LMEVMKEIRVS--PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            +E M  +R    PD   +N L+      G++     V+  M  E    D  TY++L+ G
Sbjct: 287 FIEEMS-LREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISG 345

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+ G V+EA  +L +M++   S    TY  ++  L +     +A K  +V  G+ I  D
Sbjct: 346 LCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPD 405

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
              + SL   L        A  + KEM  +
Sbjct: 406 VCTYNSLIQGLCLSRNHTVAMELYKEMKTK 435



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 5/191 (2%)

Query: 123 LRVVDI----MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           L++V+I    M   G      TF+ ++  L R  ++  A  LME M++  + PD   +  
Sbjct: 176 LKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTT 235

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM-VDD 237
           ++  +  +GNL     V ++M E        T + LV G C+ GR+EEA   +  M + +
Sbjct: 236 IMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLRE 295

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G      T+  ++  L + G+   A++ + +        D   + SL S L  L   +EA
Sbjct: 296 GFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEA 355

Query: 298 NFILKEMNKRD 308
             +L +M +RD
Sbjct: 356 VKVLNQMIERD 366


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 92/178 (51%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P    Y+ LI   C  +K+D AL++++ M + G   +   +  +++   +  R+EE
Sbjct: 266 DQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEE 325

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  + + MK + + PD   Y  L+  +C  G +     +LK M E K  AD  T++ ++ 
Sbjct: 326 AKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILG 385

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           G CR GR EEA  +L R+  +G  +  ++Y  V+ +L R G   +A + V +  GR +
Sbjct: 386 GLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGV 443



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 2/206 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL-SAITFHPILSVLTRGKRMEEAWG 159
           P    ++ L+   CK   ID A  VV+ M +      + IT+  +++ L    R++EA  
Sbjct: 198 PNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIE 257

Query: 160 LMEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
           L E M  + ++ PD   YN L+  +C    +     +++ M++     +   Y AL+ G 
Sbjct: 258 LFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGF 317

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+ GR+EEA  +   M   G       Y  ++    R G   +A++ +        + DT
Sbjct: 318 CKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADT 377

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
             F  +   L    RF EA  +L+ +
Sbjct: 378 VTFNVILGGLCREGRFEEARGMLERL 403



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 105/235 (44%), Gaps = 22/235 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ L+N   H   ++    ++    ++ C    N FN+        ++++  C+ 
Sbjct: 270 PDALTYNALINGFCHGEKVDRALKIMEFMKKNGC--NPNVFNYS-------ALMNGFCKE 320

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             RL++              P    Y TLI   C+  ++DEA+ ++  M E       +T
Sbjct: 321 -GRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVT 379

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ IL  L R  R EEA G++E +    V  +  +Y  +L + C +G L   + ++  M 
Sbjct: 380 FNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLML 439

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              +     T + L++  C AG+V +A + L  +++ G     +++A ++  + R
Sbjct: 440 GRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICR 494



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
            + ++ +L D+     R D        ++ ++G LC+  + +EA  +++ +   G  L+ 
Sbjct: 358 VDEAMELLKDMRENKCRADT-----VTFNVILGGLCREGRFEEARGMLERLPYEGVYLNK 412

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            ++  +L+ L R   +++A  L+ +M    V P     N LL   C  G +      L  
Sbjct: 413 ASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLG 472

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           + E     +  ++  LV   CR  ++  AF LL  +V
Sbjct: 473 LLELGFKPEPNSWALLVELICRERKLLPAFELLDDLV 509


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 128/281 (45%), Gaps = 2/281 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ L+N   +  +     ++  K  ++ C     T+N I ++     +++D   
Sbjct: 195 EPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMD 254

Query: 92  TLARL-DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+ +  +G P  +  Y++++  LC L +++EA R+   M + G     +T++ I+  L 
Sbjct: 255 FLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLY 314

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + + + +A   +  M +  + PD+  Y  +L   C+ G L     + KKME++    D  
Sbjct: 315 KDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVV 374

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
            Y+ ++   C+   V +A   L  MVD G      TY+ ++     LG   +A +     
Sbjct: 375 AYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEM 434

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            GR++  +T  F  L   L      +EA ++ + M ++ ++
Sbjct: 435 VGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVE 475



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+  LC+   + EA  V + M E G   +  T++ +++      +M EA  +
Sbjct: 441 PNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKV 500

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E+M     +PDL +YN L+  YC    +     +L +M  +KL  +  TY+ ++ G C 
Sbjct: 501 FEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCY 560

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            GR+ +A  L ++M   G      TY+ ++  L + G+  +A+K 
Sbjct: 561 VGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKL 605



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 120/279 (43%), Gaps = 2/279 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ +V+       L     L  +  ++ C     T+N I ++     +++D    
Sbjct: 266 PDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADF 325

Query: 93  LARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L+ + D+G P     Y T++  LC L +++EA+R+   M + G     + ++ I+  L +
Sbjct: 326 LSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCK 385

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            + + +A   +  M +  + P+   Y+ +L  +C  G L   + + K+M    +  +  T
Sbjct: 386 DRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLT 445

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           +  LV G C+ G V EA  +   M + G      TY  +M          +A K   +  
Sbjct: 446 FSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMV 505

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           G+    D   +  L +      R ++A  +L +M+ + L
Sbjct: 506 GKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKL 544



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 121/291 (41%), Gaps = 2/291 (0%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           SF +       P+   +   + +    +   TV YL N+       +T  + N + N   
Sbjct: 80  SFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLC 139

Query: 82  SLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
            L+ +        ++ K G  P    + TLI  +C   KI  A+ + + M   G     I
Sbjct: 140 RLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVI 199

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           +++ +++ L        A  + + M++    P++  YN ++ + C    +      L +M
Sbjct: 200 SYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEM 259

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
               +  DA TY+++V G C  G++ EA  L +RM  +G      TY  ++ +L +    
Sbjct: 260 VGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLV 319

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             A  F+     + I  D   + ++   L  L + NEA  + K+M ++  K
Sbjct: 320 NDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCK 370



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 5/224 (2%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           ++ ++  V  + T+ G    EP    Y+ L+N       +   R +        C    +
Sbjct: 458 MVSEARWVFETMTEKGV---EPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLH 514

Query: 72  TFNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           ++N + N   +   +      L ++   K  P    Y+T++  LC + ++ +A  +   M
Sbjct: 515 SYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKM 574

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   + +T+  +L+ L +   ++EA  L + MKE ++ PD+  Y  L+      G L
Sbjct: 575 CSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKL 634

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
               G+  K+  + +    RTY+ ++ G  + G  +EA+ L R+
Sbjct: 635 EVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRK 678



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 76/162 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI   C  +++D+A  ++  M+      + +T++ I+  L    R+ +A  L
Sbjct: 511 PDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQEL 570

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P L  Y+ LL   C  G+L     + K M+E+KL  D   Y  L+ G   
Sbjct: 571 FKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFI 630

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G++E A  L  ++  DG      TY  ++  LL+ G   +A
Sbjct: 631 GGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEA 672



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 70/191 (36%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+AL     MA      S + F   L  + + K+      L   M    V+  + + N 
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+   C   ++     V  KM +  +  D  T+  L+ G C  G+++ A  L   MV  G
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG 193

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
                 +Y  ++  L   G    AV           K +   + ++   L      N+A 
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAM 253

Query: 299 FILKEMNKRDL 309
             L EM  R +
Sbjct: 254 DFLSEMVGRGI 264


>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 91/178 (51%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P    Y+ LI   C   K+D AL++++ M + G   +   +  +++   +  R+EE
Sbjct: 309 DQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEE 368

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  + + MK + + PD   Y  L+  +C  G +     +LK M E K  AD  T++ ++ 
Sbjct: 369 AKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILG 428

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           G CR GR EEA  +L R+  +G  +  ++Y  V+ +L R G   +A + V +  GR +
Sbjct: 429 GLCREGRFEEAXGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGV 486



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 105/235 (44%), Gaps = 22/235 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ L+N   H   ++    ++    ++ C    N FN+        ++++  C+ 
Sbjct: 313 PDALTYNALINGFCHGXKVDRALKIMEFMKKNGC--NPNVFNYS-------ALMNGFCKE 363

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             RL++              P    Y TLI   C+  ++DEA+ ++  M E       +T
Sbjct: 364 -GRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVT 422

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ IL  L R  R EEA G++E +    V  +  +Y  +L + C +G L   + ++  M 
Sbjct: 423 FNVILGGLCREGRFEEAXGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLML 482

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              +     T + L++  C AG+V +A + L  +++ G     +++A ++  + R
Sbjct: 483 GRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICR 537



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 2/188 (1%)

Query: 119 IDEALRVVDIMAEGGFGL-SAITFHPILSVLTRGKRMEEAWGLMEVM-KEIRVSPDLTAY 176
           ID A  VV+ M +      + IT+  +++ L    R++EA  L E M  + ++ PD   Y
Sbjct: 259 IDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTY 318

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           N L+  +C    +     +++ M++     +   Y AL+ G C+ GR+EEA  +   M  
Sbjct: 319 NALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKS 378

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G       Y  ++    R G   +A++ +        + DT  F  +   L    RF E
Sbjct: 379 LGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEE 438

Query: 297 ANFILKEM 304
           A  +L+ +
Sbjct: 439 AXGMLERL 446



 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 5/156 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + ++ +L D+     R D        ++ ++G LC+  + +EA  +++ +   G  L+  
Sbjct: 402 DEAMELLKDMXENKCRADT-----VTFNVILGGLCREGRFEEAXGMLERLPYEGVYLNKA 456

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           ++  +L+ L R   +++A  L+ +M    V P     N LL   C  G +      L  +
Sbjct: 457 SYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGL 516

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
            E     +  ++  LV   CR  ++  AF LL  +V
Sbjct: 517 LELGFKPEPNSWALLVELICRERKLLPAFELLDDLV 552


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 7/256 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           + ++  + R  T  G  PD  T ++    L  ++ H+  ++    +  K  R   F    
Sbjct: 394 VDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEF---- 449

Query: 72  TFNFITNTENSLSVLSDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIM 129
           T+N + ++  S   L +    L  ++  G  R    Y+TLI   CK K+I+EA  + D M
Sbjct: 450 TYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEM 509

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G    ++T++ ++  L + KR+E+A  LM+ M    + PD   YN LLT +C  G++
Sbjct: 510 ELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDI 569

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
              + +++ M       D  TY  L+ G C+AGRV+ A  LLR +   G  +    Y  V
Sbjct: 570 KKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPV 629

Query: 250 MGALLRLGYYAQAVKF 265
           + AL +     +A++ 
Sbjct: 630 IQALFKRNRTHEAMRL 645



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 81/148 (54%), Gaps = 3/148 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LCKL +I+EA++++D M       +A+T++ I+S L +  R++EA  +
Sbjct: 341 PDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEI 400

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             ++    + PD+  +N L+   C   N  +   + ++M+ +    D  TY+ L+   C 
Sbjct: 401 ARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCS 460

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYST 245
           + ++EEA  LL+ M  +G     V+Y+T
Sbjct: 461 SRKLEEALNLLKEMELNGCARNVVIYNT 488



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 120/262 (45%), Gaps = 7/262 (2%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDLCRTLARLDKG-FPRKSAYD 107
           E V+ L    +RDC  N A T+N I ++   EN +   +++ R L    KG  P    ++
Sbjct: 361 EAVKILDQMVSRDCSPN-AVTYNAIISSLCKENRVDEATEIARLLT--SKGILPDVCTFN 417

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           +LI  LC       A+ + + M   G      T++ ++  L   +++EEA  L++ M+  
Sbjct: 418 SLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELN 477

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
             + ++  YN L+  +C    +     +  +ME + +  D+ TY+ L+ G C++ RVE+A
Sbjct: 478 GCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDA 537

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
             L+ +M+ +G      TY  ++    + G   +A   V          D   + +L S 
Sbjct: 538 AQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISG 597

Query: 288 LIGLERFNEANFILKEMNKRDL 309
           L    R   A+ +L+ +  + +
Sbjct: 598 LCKAGRVQVASRLLRSIQMKGM 619



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 130/322 (40%), Gaps = 18/322 (5%)

Query: 3   LLRKLPTKFLIPQ----------SVLVTRSFTKSGAFPD-EPTSAYYDDLVNAAGHERDL 51
           ++  LP  F   Q           V   R F  +   P+  P+S+ Y++++   G     
Sbjct: 54  IVHHLPPDFTPKQLIETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSF 113

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF---PRKSAYDT 108
           E +R +L +     C      F     +     +  ++   +  ++  +   P    Y+ 
Sbjct: 114 EYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNV 173

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  L    K+         M          TF+ ++  L +  ++  A  +ME M    
Sbjct: 174 LLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYG 233

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           +SPD T +  ++  Y   GNL     + ++M E        T + L+ G C+ GR+++A 
Sbjct: 234 LSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQAL 293

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGS 286
             ++  V +G      TY  ++  L ++G+   A++ V  M+ GG D  + T  + SL S
Sbjct: 294 SFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYT--YNSLIS 351

Query: 287 KLIGLERFNEANFILKEMNKRD 308
            L  L    EA  IL +M  RD
Sbjct: 352 GLCKLGEIEEAVKILDQMVSRD 373



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 109/244 (44%), Gaps = 6/244 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PDE T   Y+ L+++    R LE    LL +   + C      +N + +       +
Sbjct: 443 GCRPDEFT---YNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRI 499

Query: 87  SDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +       ++ +G  R S  Y+TLI  LCK K++++A +++D M   G      T++ +
Sbjct: 500 EEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSL 559

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L+   +   +++A  +++ M     +PD+  Y  L++  C  G +   S +L+ ++ + +
Sbjct: 560 LTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGM 619

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR-LGYYAQAV 263
                 Y+ ++    +  R  EA  L R M+D  +     TY  V   L    G   +AV
Sbjct: 620 VLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAV 679

Query: 264 KFVM 267
            F +
Sbjct: 680 DFTV 683



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 88/206 (42%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S ++ LI  LCK  ++  A+ +++ M   G      TF  I+     G  ++ A  + E 
Sbjct: 204 STFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQ 263

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M E          N L+  +C +G +      +++   E    D  TY+ LV G C+ G 
Sbjct: 264 MVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGH 323

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
            + A  ++  M+  G      TY  ++  L +LG   +AVK +     RD   +   + +
Sbjct: 324 AKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNA 383

Query: 284 LGSKLIGLERFNEANFILKEMNKRDL 309
           + S L    R +EA  I + +  + +
Sbjct: 384 IISSLCKENRVDEATEIARLLTSKGI 409



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 86/198 (43%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + LI   CK  +ID+AL  +      GF     T++ +++ L +    + A  +++ M  
Sbjct: 277 NVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLL 336

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + PD+  YN L++  C  G +     +L +M       +A TY+A++   C+  RV+E
Sbjct: 337 GGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDE 396

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  + R +   G      T+  ++  L     +  A+       G+  + D   +  L  
Sbjct: 397 ATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLID 456

Query: 287 KLIGLERFNEANFILKEM 304
            L    +  EA  +LKEM
Sbjct: 457 SLCSSRKLEEALNLLKEM 474



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 1/210 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +GF P +  Y+TL+  LCK+     A+ VVD M  GG      T++ ++S L +   +
Sbjct: 300 VSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEI 359

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           EEA  +++ M     SP+   YN ++++ C +  +   + + + +  + +  D  T+++L
Sbjct: 360 EEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSL 419

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C +   + A  L   M   G      TY  ++ +L       +A+  +        
Sbjct: 420 IQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGC 479

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +  ++ +L       +R  EA  I  EM
Sbjct: 480 ARNVVIYNTLIDGFCKNKRIEEAEEIFDEM 509



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 90/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P ++ + T++    +   +D ALR+ + M E G   + +T + +++   +  R+++A   
Sbjct: 236 PDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSF 295

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++        PD   YN L+   C  G+      V+  M    L  D  TY++L+ G C+
Sbjct: 296 IQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCK 355

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +EEA  +L +MV    S    TY  ++ +L +     +A +   +   + I  D   
Sbjct: 356 LGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCT 415

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F SL   L        A  + +EM
Sbjct: 416 FNSLIQGLCLSSNHKSAMDLFEEM 439


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 5/266 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L  +  + ++  + R  T  G  PD  T   ++ L+      R+      L  + 
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCT---FNSLIQGLCLTRNHRVAMELFEEM 426

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGFPRKS-AYDTLIGRLCKLKKI 119
               C     T+N + ++  S   L +    L +++  G  R    Y+TLI   CK  KI
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKI 486

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            EA  + D M   G   +++T++ ++  L + +R+E+A  LM+ M      PD   YN L
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSL 546

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           LT +C  G++   + +++ M       D  TY  L+ G C+AGRVE A  LLR +   G 
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKF 265
           ++    Y  V+  L R     +A+  
Sbjct: 607 ALTPHAYNPVIQGLFRKRKTTEAINL 632



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 121/264 (45%), Gaps = 7/264 (2%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDLCRTLARLDKG-FPRKSAYD 107
           E V +L     RDC  NT  T+N + +T   EN +   ++L R L    KG  P    ++
Sbjct: 348 EAVEFLDQMITRDCSPNTV-TYNTLISTLCKENQVEEATELARVLT--SKGILPDVCTFN 404

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           +LI  LC  +    A+ + + M   G      T++ ++  L    +++EA  +++ M+  
Sbjct: 405 SLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
             +  +  YN L+  +C    +     +  +ME   +  ++ TY+ L+ G C++ RVE+A
Sbjct: 465 GCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDA 524

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
             L+ +M+ +GQ     TY  ++    R G   +A   V        + D   +G+L S 
Sbjct: 525 SQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 584

Query: 288 LIGLERFNEANFILKEMNKRDLKM 311
           L    R   A+ +L+ +  + + +
Sbjct: 585 LCKAGRVEVASKLLRSIQMKGIAL 608



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 1/140 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L +G+ P    Y+++I  LCKL ++ EA+  +D M       + +T++ ++S L +  ++
Sbjct: 322 LQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQV 381

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           EEA  L  V+    + PD+  +N L+   C   N      + ++M  +    D  TY+ L
Sbjct: 382 EEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNML 441

Query: 215 VLGACRAGRVEEAFVLLRRM 234
           +   C  G+++EA  +L++M
Sbjct: 442 IDSLCSKGKLDEALNMLKQM 461



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 1/198 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S ++ LI  LC+  ++  A+ +++ M   G      TF  I+        ++ A  +
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRI 246

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME-EEKLGADARTYDALVLGAC 219
            E M E   S    + N ++  +C +G +      +++M  ++    D  T++ LV G C
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +AG V+ A  ++  M+ +G      TY  V+  L +LG   +AV+F+     RD   +T 
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTV 366

Query: 280 LFGSLGSKLIGLERFNEA 297
            + +L S L    +  EA
Sbjct: 367 TYNTLISTLCKENQVEEA 384



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 102/216 (47%), Gaps = 5/216 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PDE T   Y+ L+++   +  L+    +L +     C  +  T+N + +     + +
Sbjct: 430 GCEPDEFT---YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKI 486

Query: 87  SDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +       ++  G  R S  Y+TLI  LCK +++++A +++D M   G      T++ +
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSL 546

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L+   RG  +++A  +++ M      PD+  Y  L++  C  G +   S +L+ ++ + +
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
                 Y+ ++ G  R  +  EA  L R M++  ++
Sbjct: 607 ALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEA 642



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 1/185 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  + T++    +   +D ALR+ + M E G   S ++ + I+    +  R+E+A   
Sbjct: 222 PDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNF 281

Query: 161 MEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ M  +    PD   +N L+   C  G++     ++  M +E    D  TY++++ G C
Sbjct: 282 IQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC 341

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G V+EA   L +M+    S    TY  ++  L +     +A +   V   + I  D  
Sbjct: 342 KLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVC 401

Query: 280 LFGSL 284
            F SL
Sbjct: 402 TFNSL 406



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 119/291 (40%), Gaps = 10/291 (3%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           +K   F  EP  A Y++++   G     + +R +L       C    + F  +  +    
Sbjct: 74  SKKPNFSPEP--ALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQF 131

Query: 84  SVLSDLCRTLARLDKGFPRKSAYDT-LIGRLCKLKKIDEALRVVDI----MAEGGFGLSA 138
            +  ++   +  +   F  K   DT    R+  L      L++V+I    M+  G     
Sbjct: 132 ELQDEILGVVHWMIDDFGLKP--DTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDV 189

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            TF+ ++  L R  ++  A  ++E M    + PD   +  ++  Y  +G+L     + ++
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQ 249

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD-DGQSVLYSTYAHVMGALLRLG 257
           M E        + + +V G C+ GRVE+A   ++ M + DG      T+  ++  L + G
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           +   A++ + V        D   + S+ S L  L    EA   L +M  RD
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRD 360



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 6/170 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y++L+   C+   I +A  +V  M   G     +T+  ++S L +  R+E A  L
Sbjct: 538 PDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597

Query: 161 MEV--MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLG 217
           +    MK I ++P   AYN ++     K   T    + ++M E+ +   DA +Y  +  G
Sbjct: 598 LRSIQMKGIALTPH--AYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRG 655

Query: 218 ACR-AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            C   G + EA   L  +++ G    +S+   +   LL L      VK V
Sbjct: 656 LCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLV 705


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 2/204 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   Y+ L++    ++DL   + + +K  R  C     T+  + +  +    +      
Sbjct: 112 PTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEV 171

Query: 93  L-ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L   + KG  P  + Y  LI   CK++++DEA ++++ M   G   + +T++ +L+ L R
Sbjct: 172 LDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCR 231

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++E+A+ L   M + R  P +  YN LL A C    L     +  +M  +    DA T
Sbjct: 232 ADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAIT 291

Query: 211 YDALVLGACRAGRVEEAFVLLRRM 234
           YD L  G  RAG+V EA  L+ +M
Sbjct: 292 YDTLAWGLTRAGKVHEAQELMEKM 315



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 95/204 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  ++ RLCK K+ID+AL  V+ MA  G    A  ++ +LS L + +++EEA  L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M + R++P++  YN L+   C    +     + K+M  +       +Y+ L+ G C+
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +  A  +  +MV         TY  ++  L + G    A + +     + +  +   
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L      + R +EA+ +L++M
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQM 210



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 90/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK  +I+ A  +   MA  G+  + ++++ ++    + K +  A  +
Sbjct: 77  PNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDV 136

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P++  Y  L+      G + A + VL  M ++ +  +  TY  L+ G C+
Sbjct: 137 FDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCK 196

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             RV+EA  LL +MV  G +    TY  ++ +L R      A K       R        
Sbjct: 197 VRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVT 256

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L   L   ++ + A+ +  EM
Sbjct: 257 YNTLLRALCHHKQLDGAHRLYAEM 280



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 122/277 (44%), Gaps = 6/277 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           +P +  Y+ +++    E  +E  R L  K  +        T+N + N       +    +
Sbjct: 41  KPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYE 100

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L + +A   KG+ P + +Y+TLI   CK K +  A  V D M       + +T+  ++  
Sbjct: 101 LFKEMA--GKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDG 158

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L++  +++ A  +++ M +  V+P++  Y+ L+  +C    +     +L++M  + +   
Sbjct: 159 LSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPT 218

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY+ L+   CRA ++E+AF L R M          TY  ++ AL        A +   
Sbjct: 219 VVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYA 278

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
               +    D   + +L   L    + +EA  ++++M
Sbjct: 279 EMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 4/142 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD---L 89
           P  A Y  L++     R ++    LL +        T  T+N + N+      L D   L
Sbjct: 182 PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKL 241

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            R +A+  +  P    Y+TL+  LC  K++D A R+   M   G    AIT+  +   LT
Sbjct: 242 FRGMAQ-RRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLT 300

Query: 150 RGKRMEEAWGLMEVMKEIRVSP 171
           R  ++ EA  LME MK  + +P
Sbjct: 301 RAGKVHEAQELMEKMKLTKRNP 322


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 2/204 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   Y+ L++    ++DL   + + +K  R  C     T+  + +  +    +      
Sbjct: 217 PTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEV 276

Query: 93  L-ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L   + KG  P  + Y  LI   CK++++DEA ++++ M   G   + +T++ +L+ L R
Sbjct: 277 LDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCR 336

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++E+A+ L   M + R  P +  YN LL A C    L     +  +M  +    DA T
Sbjct: 337 ADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAIT 396

Query: 211 YDALVLGACRAGRVEEAFVLLRRM 234
           YD L  G  RAG+V EA  L+ +M
Sbjct: 397 YDTLAWGLTRAGKVHEAQELMEKM 420



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 81/142 (57%), Gaps = 2/142 (1%)

Query: 98  KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           K F RK+ AY T+I  LCKL +++EA  +++ MA       A+T+ PI+  L + KR+++
Sbjct: 74  KRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGPIVERLCKTKRIDD 132

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A   +E M    + PD   YN++L+  C +  +     + +KM ++++  +  TY+ L+ 
Sbjct: 133 ALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLIN 192

Query: 217 GACRAGRVEEAFVLLRRMVDDG 238
           G C+A R+E A+ L + M   G
Sbjct: 193 GLCKAWRIETAYELFKEMAGKG 214



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 95/204 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  ++ RLCK K+ID+AL  V+ MA  G    A  ++ +LS L + +++EEA  L
Sbjct: 112 PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 171

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M + R++P++  YN L+   C    +     + K+M  +       +Y+ L+ G C+
Sbjct: 172 FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 231

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +  A  +  +MV         TY  ++  L + G    A + +     + +  +   
Sbjct: 232 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 291

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L      + R +EA+ +L++M
Sbjct: 292 YSCLIDGFCKVRRVDEAHKLLEQM 315



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 90/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK  +I+ A  +   MA  G+  + ++++ ++    + K +  A  +
Sbjct: 182 PNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDV 241

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P++  Y  L+      G + A + VL  M ++ +  +  TY  L+ G C+
Sbjct: 242 FDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCK 301

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             RV+EA  LL +MV  G +    TY  ++ +L R      A K       R        
Sbjct: 302 VRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVT 361

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L   L   ++ + A+ +  EM
Sbjct: 362 YNTLLRALCHHKQLDGAHRLYAEM 385



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 122/277 (44%), Gaps = 6/277 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           +P +  Y+ +++    E  +E  R L  K  +        T+N + N       +    +
Sbjct: 146 KPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYE 205

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L + +A   KG+ P + +Y+TLI   CK K +  A  V D M       + +T+  ++  
Sbjct: 206 LFKEMA--GKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDG 263

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L++  +++ A  +++ M +  V+P++  Y+ L+  +C    +     +L++M  + +   
Sbjct: 264 LSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPT 323

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY+ L+   CRA ++E+AF L R M          TY  ++ AL        A +   
Sbjct: 324 VVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYA 383

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
               +    D   + +L   L    + +EA  ++++M
Sbjct: 384 EMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 4/142 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD---L 89
           P  A Y  L++     R ++    LL +        T  T+N + N+      L D   L
Sbjct: 287 PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKL 346

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            R +A+  +  P    Y+TL+  LC  K++D A R+   M   G    AIT+  +   LT
Sbjct: 347 FRGMAQ-RRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLT 405

Query: 150 RGKRMEEAWGLMEVMKEIRVSP 171
           R  ++ EA  LME MK  + +P
Sbjct: 406 RAGKVHEAQELMEKMKLTKRNP 427



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 1/143 (0%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L +  P  + ++T+     K  ++++   V   M E G+ L A  +  ++S L +    +
Sbjct: 3   LRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFD 62

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA+ L+  M+  R      AY+ ++   C    +     +++KM       DA TY  +V
Sbjct: 63  EAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGPIV 121

Query: 216 LGACRAGRVEEAFVLLRRMVDDG 238
              C+  R+++A   +  M   G
Sbjct: 122 ERLCKTKRIDDALATVEEMATRG 144



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 1/172 (0%)

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           A TF+ +     +  R+E+   + + M E   +   + Y  L++  C  GN      +L 
Sbjct: 10  AATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLH 69

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            M  ++    A  Y  ++   C+  RVEEA  L+ +M          TY  ++  L +  
Sbjct: 70  TMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDAL-TYGPIVERLCKTK 128

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               A+  V     R IK D  ++  + S L   E+  EA  + ++M K+ +
Sbjct: 129 RIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 180


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 2/233 (0%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F ++ A   +P    Y+ LV     +  +     ++N+ A + C     T+N + N    
Sbjct: 351 FNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCK 410

Query: 83  LSVLSDLCRTLA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +  +SD    +   + KG+ P    ++TLI   CK  K+D AL++V+ M E G     IT
Sbjct: 411 MGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTIT 470

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ +L+ L +  ++ E     + M      P+   YN L+  +C    +   S V+ KM 
Sbjct: 471 YNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS 530

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +E L  DA +++ L+ G CR G +E A++L +++ + G S    T+  ++GA 
Sbjct: 531 QEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 583



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 94/196 (47%), Gaps = 11/196 (5%)

Query: 84  SVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           SVL+ LC+   +  +++ F         P    Y+ LI   C+  K++EA +V+  M++ 
Sbjct: 473 SVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 532

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G    A++F+ ++    R   +E A+ L + ++E   S     +N L+ A+  K N+   
Sbjct: 533 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMA 592

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  +M  +   AD+ TY  L+ G+C+   V+ A++ L  M+  G     ST+  V+ +
Sbjct: 593 EKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINS 652

Query: 253 LLRLGYYAQAVKFVMV 268
           L       QAV  + +
Sbjct: 653 LTVNHRVFQAVGIIHI 668



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 89/205 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I   CK+  + EA  ++      GF    +T+  +++ L     +E A  
Sbjct: 290 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALE 349

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L    +   + PD+  YN L+   C +G +     V+ +M EE    D +TY+ ++ G C
Sbjct: 350 LFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLC 409

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G + +A V++   +  G      T+  ++    +      A++ V       I  DT 
Sbjct: 410 KMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTI 469

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            + S+ + L    + NE N   +EM
Sbjct: 470 TYNSVLNGLCKAGKVNEVNETFQEM 494



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 27/296 (9%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R L  K +  +++   R     G  PD+ T   Y+ +++       ++    LL   
Sbjct: 263 TLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFT---YNTIIDGYCKISMVQEATELL--- 316

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLC------RTLARLD----KGF-PRKSAYDTLI 110
            +D  F       F+ +     S+++ LC      R L   +    KG  P    Y++L+
Sbjct: 317 -KDAVFK-----GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV 370

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME--VMKEIR 168
             LC    I  AL+V++ MAE G      T++ +++ L +   + +A  +M   +MK   
Sbjct: 371 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL 430

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             PD+  +N L+  YC +  L +   ++++M E  +  D  TY++++ G C+AG+V E  
Sbjct: 431 --PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVN 488

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
              + M+  G      TY  ++    R     +A K ++      +  D   F +L
Sbjct: 489 ETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL 544



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 1/185 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP  +A++ ++  LCK   + EA  ++  + + G  ++  T++  +  L    R+ EA  
Sbjct: 186 FPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVR 245

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M+   V PD+  YN L+   C K         L++M  +    D  TY+ ++ G C
Sbjct: 246 LVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYC 304

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +   V+EA  LL+  V  G      TY  ++  L   G   +A++       + IK D  
Sbjct: 305 KISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 364

Query: 280 LFGSL 284
           ++ SL
Sbjct: 365 VYNSL 369



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
            C   +   ALR++  +   G    A+ +  ++  L       +A  L + M    V P+
Sbjct: 133 FCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPN 188

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           L A+N +L A C +G++     +L K+ +  +  +  TY+  + G C AGR+ EA  L+ 
Sbjct: 189 LAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVD 248

Query: 233 RM 234
            M
Sbjct: 249 GM 250



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 1/198 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+  I  LC+  ++ EA+R+VD M         +T++ ++  L +    +EA   +  M 
Sbjct: 227 YNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYNTLIRGLCKKSMPQEAMHYLRRMM 285

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                PD   YN ++  YC    +   + +LK    +    D  TY +L+ G C  G VE
Sbjct: 286 NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVE 345

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A  L       G       Y  ++  L   G    A++ +          D + +  + 
Sbjct: 346 RALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 405

Query: 286 SKLIGLERFNEANFILKE 303
           + L  +   ++A  ++ +
Sbjct: 406 NGLCKMGNISDATVVMND 423


>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
 gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 99/204 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI   C++  IDEALR+ ++M   GF    +T++ IL  L    R+ EA  L+  M 
Sbjct: 310 YTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMS 369

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
             ++ PD    N L+ AYC   ++ +   V KKM E  L  D  +Y AL+ G C+   +E
Sbjct: 370 GKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELE 429

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A   L  M++ G S  Y+TY+ ++          +  K +     R +  D  L+  L 
Sbjct: 430 NAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLI 489

Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
            ++  LE+ + A  + + M K+ L
Sbjct: 490 RRICKLEQVDYAKVLFESMEKKGL 513



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 1/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A   L+  L K +  D   ++   M + G   +   ++ ++   ++    E+A  L
Sbjct: 166 PHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKL 225

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  V PD+  YN L++ YC K        V  +ME   +  +  TY++ + G  R
Sbjct: 226 LSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSR 285

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+ EA  L R + DD  +  + TY  ++    R+    +A++   V   R        
Sbjct: 286 EGRMREATRLFREIKDD-VTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVT 344

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + S+  KL    R  EAN +L EM+ + ++
Sbjct: 345 YNSILRKLCEDGRIREANRLLTEMSGKKIE 374



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 18/224 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     +TLI   CK++ +  A++V   M E G  L   ++  ++    +   +E A   
Sbjct: 375 PDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEE 434

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E   SP    Y++L+  +  +      + +L++ E+  L AD   Y  L+   C+
Sbjct: 435 LFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICK 494

Query: 221 AGRVEEAFVLLRRMVDD---GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             +V+ A VL   M      G SV+++T A+   A  R G   +A     V   R + ++
Sbjct: 495 LEQVDYAKVLFESMEKKGLVGDSVIFTTMAY---AYWRTGKVTEASALFDVMYNRRLMVN 551

Query: 278 TELFGSLGSKLIG---LERFNEANF---------ILKEMNKRDL 309
            +L+ S+ +   G   + RF  ++          IL+EMN+ ++
Sbjct: 552 LKLYKSISASYAGDNDVLRFFWSHVGDRCLISKSILREMNRSEV 595



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 95/207 (45%), Gaps = 1/207 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+ L+    K    ++A +++  M E G      T++ ++SV  +     EA  + + M
Sbjct: 205 VYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRM 264

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +   V+P++  YN  +  +  +G +   + + ++++++ + A+  TY  L+ G CR   +
Sbjct: 265 ERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDD-VTANHVTYTTLIDGYCRMNDI 323

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA  L   M   G S    TY  ++  L   G   +A + +    G+ I+ D     +L
Sbjct: 324 DEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTL 383

Query: 285 GSKLIGLERFNEANFILKEMNKRDLKM 311
            +    +E    A  + K+M +  LK+
Sbjct: 384 INAYCKIEDMVSAVKVKKKMIESGLKL 410


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 8/237 (3%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
             F K G    E   ++ D++ N   H   +E    L N+     C     T+N + ++ 
Sbjct: 271 HGFCKEGRI--EEALSFIDEMSNEGKHTMAIE----LYNEMKNKGCQPDEFTYNMLIDSL 324

Query: 81  NSLSVLSDLCRTLARLD-KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
                L +    L  ++  G  R    Y+TLI   CK KKI+EA  + D M   G   ++
Sbjct: 325 CYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNS 384

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T++ ++  L + +R++EA  LM+ M    + PD   YN +LT +C +G++   + +++ 
Sbjct: 385 VTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQT 444

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           M       D  TY  L+ G C+AGRVE A  LLR +   G  +    Y  V+ AL +
Sbjct: 445 MTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFK 501



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 6/244 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PDE T   Y+ L+++  +   L+    LL +     C     T+N + +       +
Sbjct: 309 GCQPDEFT---YNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKI 365

Query: 87  SDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +      +++ +G  R S  Y+TLI  LCK +++ EA +++D M   G      T++ +
Sbjct: 366 EEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSM 425

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L+   R   +++A  +++ M      PD+  Y  L+   C  G +   S +L+ ++ + +
Sbjct: 426 LTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGM 485

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL-GYYAQAV 263
                 Y+ ++    +  R +EA  L R M + G +    TY  V   L    G   +AV
Sbjct: 486 VLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAV 545

Query: 264 KFVM 267
            FV+
Sbjct: 546 DFVI 549



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 17/227 (7%)

Query: 96  LDKGFPRKSAYDTLIGR-LCKLKKIDEALRVVDIMAEGGFGLSAI--------------- 139
           LD G P  +    ++    CK  +I+EAL  +D M+  G    AI               
Sbjct: 255 LDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDE 314

Query: 140 -TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T++ ++  L    +++EA GL+  M+    + ++  YN L+  +C    +     +  +
Sbjct: 315 FTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQ 374

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           ME + L  ++ TY+ L+ G C++ RV+EA  L+ +M+ +G      TY  ++    R G 
Sbjct: 375 MEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGD 434

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
             +A   V        + D   +G+L   L    R   A+ +L+ + 
Sbjct: 435 IQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQ 481



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 2/186 (1%)

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAIT 140
           S + + D+ + +  LD    R       I    K +  +E L +V++M  E G  L  + 
Sbjct: 102 SFNSMKDILQEMKGLDCQIDR-GVLLIFIDSYAKFELYEEILCIVEVMEVEFGLALDTLL 160

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ +L+VL  G +++    +   M    + PD++ +N L+ A C    +     V+++M 
Sbjct: 161 YNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMS 220

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              L  D +T+  L+ G    G ++ AF +  +M+D G  V   T   ++    + G   
Sbjct: 221 SYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIE 280

Query: 261 QAVKFV 266
           +A+ F+
Sbjct: 281 EALSFI 286


>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
          Length = 465

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 8/281 (2%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVL 86
           P  P++  +  ++++ G  R  +    + N+  R  C  T   +N + +      S +  
Sbjct: 150 PLSPST--FSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGA 207

Query: 87  SDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
             L R +AR  KG  P ++ + TL+   C   K+ EA   +D MAE GF         ++
Sbjct: 208 YKLLRRMAR--KGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLV 265

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L R  R+EEA      M +  V PD+  +N L  A C  G++     +L       L 
Sbjct: 266 DGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLC 325

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            D  TY  ++    +AGR++EAF L    ++DG     S YA ++ AL + G +A A  F
Sbjct: 326 PDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAF 385

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
                 +    +  ++  L    +   RF EA   L EM++
Sbjct: 386 FGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSE 426



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 2/259 (0%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-G 99
           ++ AA     L   R+L   RA+     +A+ F+ +        + + L    A +   G
Sbjct: 89  VIRAAAPAEPLHAARFLAWLRAKPSFAASADHFDALLLPLARARLFTHLWSLAADMRALG 148

Query: 100 FP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
            P   S +  +I    + +  D+A+ V + +   G   +   ++ +L  L        A+
Sbjct: 149 LPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAY 208

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  M    V+PD   ++ L+ A+C  G L      L  M E       R  D LV G 
Sbjct: 209 KLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGL 268

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            RAGR+EEA     RM  +G     +T+  +  AL   G    AV  +     R +  D 
Sbjct: 269 VRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDI 328

Query: 279 ELFGSLGSKLIGLERFNEA 297
             +  +   +    R +EA
Sbjct: 329 STYKVMIPAVAKAGRIDEA 347



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 48/123 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y  +I  + K  +IDEA R+     E G       +  I+  L +  R  +A+  
Sbjct: 326 PDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAF 385

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK     P+   Y  L+      G     +  L +M E      A T++++V G   
Sbjct: 386 FGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRH 445

Query: 221 AGR 223
            G+
Sbjct: 446 CGK 448


>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
          Length = 461

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 8/281 (2%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVL 86
           P  P++  +  ++++ G  R  +    + N+  R  C  T   +N + +      S +  
Sbjct: 146 PLSPST--FSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGA 203

Query: 87  SDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
             L R +AR  KG  P ++ + TL+   C   K+ EA   +D MAE GF         ++
Sbjct: 204 YKLLRRMAR--KGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLV 261

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L R  R+EEA      M +  V PD+  +N L  A C  G++     +L       L 
Sbjct: 262 DGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLC 321

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            D  TY  ++    +AGR++EAF L    ++DG     S YA ++ AL + G +A A  F
Sbjct: 322 PDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAF 381

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
                 +    +  ++  L    +   RF EA   L EM++
Sbjct: 382 FGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSE 422



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 2/259 (0%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-G 99
           ++ AA     L   R+L   RA+     +A+ F+ +        + + L    A +   G
Sbjct: 85  VIRAAAPAEPLHAARFLAWLRAKPSFAASADHFDALLLPLARARLFTHLWSLAADMRALG 144

Query: 100 FP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
            P   S +  +I    + +  D+A+ V + +   G   +   ++ +L  L        A+
Sbjct: 145 LPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAY 204

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  M    V+PD   ++ L+ A+C  G L      L  M E       R  D LV G 
Sbjct: 205 KLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGL 264

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            RAGR+EEA     RM  +G     +T+  +  AL   G    AV  +     R +  D 
Sbjct: 265 VRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDI 324

Query: 279 ELFGSLGSKLIGLERFNEA 297
             +  +   +    R +EA
Sbjct: 325 STYKVMIPAVAKAGRIDEA 343



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 48/123 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y  +I  + K  +IDEA R+     E G       +  I+  L +  R  +A+  
Sbjct: 322 PDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAF 381

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK     P+   Y  L+      G     +  L +M E      A T++++V G   
Sbjct: 382 FGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRH 441

Query: 221 AGR 223
            G+
Sbjct: 442 CGK 444


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 3/255 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ L+NA   +  L   R LL +  RD    T  T+N + +    L  +    + 
Sbjct: 241 PDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKV 300

Query: 93  LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS-AITFHPILSVLT 149
           +  +   GF P    Y+ L   LC+  K+DEA R+ D M   G  L   +T++ ++    
Sbjct: 301 VESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACF 360

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + +   +A  L+E M++  V P L  +N ++ + C +G L    G L+K+ EE L  D  
Sbjct: 361 KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVI 420

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ L+   C+AG V +AF L+  MV  G  +   T   V+  L ++  Y  A + +   
Sbjct: 421 TYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSP 480

Query: 270 GGRDIKLDTELFGSL 284
             R    D   +G++
Sbjct: 481 PQRGFVPDEVSYGTV 495



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 6/182 (3%)

Query: 144 ILSVLTRGKRM--EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           +LS L+R      + +  +   + E+R+ P+   +N L+  +C KG L      L  M+ 
Sbjct: 177 VLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQG 236

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             L  DA TY+ L+   CR G + EA  LL RM  DG +    TY  ++ A  RLG+  Q
Sbjct: 237 FGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQ 296

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
           A K V        + D   +  L   L    + +EA F LK+  +R   +G  L D    
Sbjct: 297 ATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEA-FRLKDEMER---LGTALPDVVTY 352

Query: 322 NV 323
           N 
Sbjct: 353 NT 354



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 99/217 (45%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           + RL    P    Y+TL+    K +   +ALR+++ M + G   + +T + ++  L +  
Sbjct: 339 MERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEG 398

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           ++EEA G +E + E  ++PD+  YN L+ AYC  GN+     ++ +M  + L  D  T +
Sbjct: 399 KLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLN 458

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
            ++   C+  R E+A  LL      G      +Y  VM A  +      A++       R
Sbjct: 459 TVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIER 518

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +      + +L   L  +ER  EA   L E  ++ L
Sbjct: 519 KLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGL 555



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 1/208 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P + +Y T++    K    + ALR+ D M E     S  T++ ++  L R +R++E
Sbjct: 483 RGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKE 542

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A   +    E  + PD T YN ++ AYC +G+L        KM E     D  T + L+ 
Sbjct: 543 AIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMN 602

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C  G++++A  L    V+ G+ V   TY  ++ ++ ++G    A+ F      + ++ 
Sbjct: 603 GLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQP 662

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           D   +  + S L    R  EA+ +L ++
Sbjct: 663 DAFTYNVVLSALSEAGRSEEAHNMLHKL 690



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 118/275 (42%), Gaps = 40/275 (14%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           TFN + +T  S   L+D   TL+ + +GF   P    Y+TL+   C+   + EA  ++  
Sbjct: 210 TFNLLVHTHCSKGTLADALATLSTM-QGFGLSPDAVTYNTLLNAHCRKGMLGEARALLAR 268

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   +  T++ ++S   R   +++A  ++E M      PDL  YN L    C  G 
Sbjct: 269 MKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGK 328

Query: 189 L--------------TATSGV----------------------LKKMEEEKLGADARTYD 212
           +              TA   V                      L++M ++ +     T++
Sbjct: 329 VDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHN 388

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
            +V   C+ G++EEA   L ++ ++G +    TY  ++ A  + G  A+A   +    G+
Sbjct: 389 IVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGK 448

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            +K+DT    ++   L  ++R+ +A  +L    +R
Sbjct: 449 GLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQR 483



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 100/210 (47%), Gaps = 11/210 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLN----KRARDCCFNTANT-FNFITNTENSLSVLS 87
           PTS   D  ++A    R       LL+    +R        AN   + ++ + ++L   S
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192

Query: 88  -DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPI 144
            D+ R+L  L +  P    ++ L+   C    + +AL  +  M   GFGLS  A+T++ +
Sbjct: 193 LDVFRSLIEL-RLHPNHYTFNLLVHTHCSKGTLADALATLSTMQ--GFGLSPDAVTYNTL 249

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L+   R   + EA  L+  MK   ++P    YN L++A+   G +   + V++ M     
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGF 309

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRM 234
             D RTY+ L +G C+AG+V+EAF L   M
Sbjct: 310 EPDLRTYNVLAMGLCQAGKVDEAFRLKDEM 339



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 75/165 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   CK   + +A  ++D M   G  +   T + +L  L + KR E+A  L
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEEL 476

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +    +    PD  +Y  ++ AY  + N      +  +M E KL     TY+ L+ G CR
Sbjct: 477 LHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCR 536

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             R++EA   L   V+ G     +TY  ++ A  + G    A +F
Sbjct: 537 MERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRF 581



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 105/246 (42%), Gaps = 26/246 (10%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F + G  PDE T   Y+ +++A   E DLE      NK          N+F     T N+
Sbjct: 550 FVEKGLVPDETT---YNIIIHAYCKEGDLENAFRFHNKMVE-------NSFKPDVVTCNT 599

Query: 83  LSVLSDLCRTLARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMA 130
           L  ++ LC    +LDK      +            Y+TLI  +CK+  +D AL   D M 
Sbjct: 600 L--MNGLCLH-GKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDME 656

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G    A T++ +LS L+   R EEA  ++  + +        A   L  +   + ++ 
Sbjct: 657 VKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVK 716

Query: 191 ATSGVLKKMEEEKLGADA-RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
              G  +    EK   +A  TY   + G C  G+++EA  +L  M+  G  V  STY  +
Sbjct: 717 EHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDCSTYITL 776

Query: 250 MGALLR 255
           M  L++
Sbjct: 777 MEGLIK 782


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 99/204 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   CK+ K+DE + ++  M E G   S + F+ ++    +   ME+A  +
Sbjct: 328 PNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICV 387

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MK  +V P+   YN L+  +C K ++     +L KM E KL  +  TY+ L+ G C+
Sbjct: 388 LDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCK 447

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A  V+ A+ L   M+ DG      T+   +  L ++G   QA +       +  + +  L
Sbjct: 448 ARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFL 507

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L       E+F++A+ + K M
Sbjct: 508 YTALIDGYCKAEKFSDAHLLFKRM 531



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 106/225 (47%), Gaps = 5/225 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E+++ VL  +     +L+K  P    Y+ LI   C+ K +D A+ +++ M E     + +
Sbjct: 382 EDAICVLDSM-----KLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLV 436

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T++ ++  L + + ++ AW L  +M +    PD   +   +   C  G +     V + +
Sbjct: 437 TYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESL 496

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           +E+   A+   Y AL+ G C+A +  +A +L +RM+ +G      T+  ++  L + G  
Sbjct: 497 KEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKV 556

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             A+  V V G  D K     +  L  +++    F+ AN  L +M
Sbjct: 557 EDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQM 601



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D  FP    Y  L+   C++ K  EAL+  + M E G   +  T+  ++    +  +M+E
Sbjct: 289 DGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDE 348

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
              ++  M E  +   +  +N L+  YC +G +     VL  M+  K+  ++RTY+ L+ 
Sbjct: 349 GMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELIC 408

Query: 217 GACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAH 248
           G CR   ++ A  LL +M ++  S   V Y+T  H
Sbjct: 409 GFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIH 443



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 11/235 (4%)

Query: 25  KSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           K G  PD+ T  A+ D L      E+  +    L  K A       AN F +    +   
Sbjct: 463 KDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAE------ANEFLYTALIDGYC 516

Query: 84  SV--LSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
                SD      R+  +  FP    ++ L+  L K  K+++A+ +VD+M +     +  
Sbjct: 517 KAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVH 576

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  ++  + R    + A   ++ M      P++  Y   + AYC +G L     ++ K+
Sbjct: 577 TYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKI 636

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +EE +  D+  YD LV      G+++ AF +L RM D G      TY+ ++  L+
Sbjct: 637 KEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLI 691



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y +LI   CK+ ++ +A +V +IM + G   + +++  ++       +++EA  L   M
Sbjct: 227 TYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQM 286

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           KE    PD+  Y  L+ A+C  G  T      ++M E  +  +  TY  L+   C+ G++
Sbjct: 287 KEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKM 346

Query: 225 EEAFVLLRRMVDDG 238
           +E   +L  M++ G
Sbjct: 347 DEGMEMLSTMLEKG 360



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI   C++ KIDEAL +   M E G      T+  +++      +  EA    E M
Sbjct: 262 SYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEM 321

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E  + P++  Y  L+  +C  G +     +L  M E+ L +    ++AL+ G C+ G +
Sbjct: 322 VENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMM 381

Query: 225 EEAFVLLRRM 234
           E+A  +L  M
Sbjct: 382 EDAICVLDSM 391



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 35/180 (19%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA  V++++    F LS  +++ +  VL+R   ++E   L + M    V P+L ++N ++
Sbjct: 138 EARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMV 197

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR-------------------- 220
            A+C  GN+         + +     D+ TY +L+LG C+                    
Sbjct: 198 NAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCL 257

Query: 221 ---------------AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
                           G+++EA  L  +M +DG      TY  ++ A   +G   +A+KF
Sbjct: 258 RNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKF 317



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 22/231 (9%)

Query: 46  GHERDLETVRYLLNKRARDCCFNTANTF--NFITNTENSLSVLS--DLCRTLAR------ 95
           G  R  E VR   N   + C  +    F  N +T+ E SLSV S   L   L+R      
Sbjct: 117 GFLRAAENVR---NSMIKSCVSSHEARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDE 173

Query: 96  --------LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
                   L+ G  P   +++T++   CK+  +  A      + + GF   + T+  ++ 
Sbjct: 174 LNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLIL 233

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
              +   + +A+ + E+M +     +  +Y  L+  +C  G +     +  +M+E+    
Sbjct: 234 GYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFP 293

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           D  TY  LV   C  G+  EA      MV++G      TY  ++    ++G
Sbjct: 294 DVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVG 344



 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 68/162 (41%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M E G   +  T+  ++  L + + +  A+ L   MKE  +SP    +N LL++ C  G 
Sbjct: 732 MVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGM 791

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                 +L  M E    A   +Y  LV G    G  E+A  + R ++  G +     +  
Sbjct: 792 HEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKV 851

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG 290
           ++  L+R GY  +  +   +      +L ++    L  +L G
Sbjct: 852 LLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTMLSQELNG 893


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 131/291 (45%), Gaps = 3/291 (1%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           + +K   F   P +  Y+ L+NA   +  L   R LL +  ++    T  T+N + +   
Sbjct: 231 TLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYA 290

Query: 82  SLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF-GLSA 138
            L  +      +  +   GF P    Y+ L   LC+  K+DEA ++ D M + G      
Sbjct: 291 RLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDV 350

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T++ ++    + +R  +A  L+E M+E  V   L  +N ++   C +G L    G L+ 
Sbjct: 351 VTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEM 410

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M EE L  D  TY+ L+  +C+AG V +AFVL+  MV  G  +   T   ++  L +   
Sbjct: 411 MTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKR 470

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           Y +A + +     R    D   +G++ +      +   A  +  EM KR L
Sbjct: 471 YEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKL 521



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 9/288 (3%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCC---FNTANTFNFITNT 79
            T+ G  PD  T   Y+ L++A+    ++     L+++  R        T NT  +    
Sbjct: 411 MTEEGLTPDVIT---YNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCK 467

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E       +L R  A   +GF P + +Y T++    K  K + AL + D M +     S 
Sbjct: 468 EKRYEEAEELLR--APPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSI 525

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T++ ++  L+   ++ EA   +  + E+ + PD T YN ++ AYC +G+L        K
Sbjct: 526 STYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNK 585

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M E     D  T + L+ G C  GR+E+A  L    V+ G+ V   TY  ++ AL +   
Sbjct: 586 MVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDND 645

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
              A++F      R ++ D   +  L S L    R  EA  +L ++N+
Sbjct: 646 VDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNE 693



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 2/165 (1%)

Query: 144 ILSVLTRGKRMEEAWGL--MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           +LS L R         L     +  +R+ P+   +N L+  +C KG L      L KM+ 
Sbjct: 178 VLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQG 237

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             L  DA TY+ L+   CR G + EA  LL RM  +G     +TY  ++ A  RLG+  Q
Sbjct: 238 FGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQ 297

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           A   V        + D   +  L + L    + +EA  +  EM +
Sbjct: 298 ATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQ 342



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 4/136 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEAW 158
           P    ++ L+   C    + +AL  +  M   GFGLS  A+T++ +L+   R   + EA 
Sbjct: 207 PNHYTFNLLVHTHCSKGTLADALSTLSKMQ--GFGLSPDAVTYNTLLNAHCRKGMLGEAR 264

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  MK+  + P    YN L++AY   G +   + V++ M       D  TY+ L  G 
Sbjct: 265 TLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGL 324

Query: 219 CRAGRVEEAFVLLRRM 234
           C+AG+V+EAF L   M
Sbjct: 325 CQAGKVDEAFKLKDEM 340



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R+  + G  PDE +   Y  ++ A   E   E    L ++  +     + +T+N +    
Sbjct: 479 RAPPQRGFVPDEVS---YGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGL 535

Query: 81  NSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           +++  L++    L  L + G  P  + Y+ +I   CK   +++A +  + M E  F    
Sbjct: 536 STMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDV 595

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T + +++ L    R+E+A  L E   E     D+  YN L+ A C   ++         
Sbjct: 596 VTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFAD 655

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           ME   L  D  TY+ L+     AGR  EA  +L ++ + G+
Sbjct: 656 MEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGK 696



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 13/178 (7%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF+ ++        + +A   +  M+   +SPD   YN LL A+C KG L     +L +M
Sbjct: 211 TFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARM 270

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           ++E +     TY+ LV    R G +++A  ++  M   G      TY  +   L + G  
Sbjct: 271 KKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 330

Query: 260 AQAVKFVMVCGGRD-------IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +A K       +D       +  D   + +L       +R ++A  +L+EM ++ +K
Sbjct: 331 DEAFKL------KDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVK 382



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 69/158 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ ++  LC+  +++EAL  +++M E G     IT++ ++    +   + +A+ LM+ M 
Sbjct: 388 HNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMV 447

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +  D    N LL   C +        +L+   +     D  +Y  ++    +  + E
Sbjct: 448 RSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPE 507

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            A  L   M+    +   STY  ++  L  +G   +A+
Sbjct: 508 PALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAI 545


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 2/233 (0%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F ++ A   +P    Y+ LV     +  +     ++N+ A + C     T+N + N    
Sbjct: 348 FNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCK 407

Query: 83  LSVLSDLCRTLA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +  +SD    +   + KG+ P    ++TLI   CK  K+D AL++V+ M E G     IT
Sbjct: 408 MGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTIT 467

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ +L+ L +  ++ E     + M      P+   YN L+  +C    +   S V+ KM 
Sbjct: 468 YNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS 527

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +E L  DA +++ L+ G CR G +E A++L +++ + G S    T+  ++GA 
Sbjct: 528 QEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 580



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 94/196 (47%), Gaps = 11/196 (5%)

Query: 84  SVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           SVL+ LC+   +  +++ F         P    Y+ LI   C+  K++EA +V+  M++ 
Sbjct: 470 SVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 529

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G    A++F+ ++    R   +E A+ L + ++E   S     +N L+ A+  K N+   
Sbjct: 530 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMA 589

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  +M  +   AD+ TY  L+ G+C+   V+ A++ L  M+  G     ST+  V+ +
Sbjct: 590 EKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINS 649

Query: 253 LLRLGYYAQAVKFVMV 268
           L       QAV  + +
Sbjct: 650 LTVNHRVFQAVGIIHI 665



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 89/205 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I   CK+  + EA  ++      GF    +T+  +++ L     +E A  
Sbjct: 287 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALE 346

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L    +   + PD+  YN L+   C +G +     V+ +M EE    D +TY+ ++ G C
Sbjct: 347 LFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLC 406

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G + +A V++   +  G      T+  ++    +      A++ V       I  DT 
Sbjct: 407 KMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTI 466

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            + S+ + L    + NE N   +EM
Sbjct: 467 TYNSVLNGLCKAGKVNEVNETFQEM 491



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 1/185 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP  +A++ ++  LCK   + EA  ++  + + G  ++  T++  +  L    R+ EA  
Sbjct: 183 FPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVR 242

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M+   V PD+  YN L+   C K         L++M  +    D  TY+ ++ G C
Sbjct: 243 LVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYC 301

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +   V+EA  LL+  V  G      TY  ++  L   G   +A++       + IK D  
Sbjct: 302 KISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 361

Query: 280 LFGSL 284
           ++ SL
Sbjct: 362 VYNSL 366



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 27/296 (9%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R L  K +  +++   R     G  PD+ T   Y+ +++       ++    LL   
Sbjct: 260 TLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFT---YNTIIDGYCKISMVQEATELL--- 313

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLC------RTLARLD----KGF-PRKSAYDTLI 110
            +D  F       F+ +     S+++ LC      R L   +    KG  P    Y++L+
Sbjct: 314 -KDAVFK-----GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV 367

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME--VMKEIR 168
             LC    I  AL+V++ MAE G      T++ +++ L +   + +A  +M   +MK   
Sbjct: 368 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL 427

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             PD+  +N L+  YC +  L +   ++++M E  +  D  TY++++ G C+AG+V E  
Sbjct: 428 --PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVN 485

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
              + M+  G      TY  ++    R     +A K ++      +  D   F +L
Sbjct: 486 ETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL 541



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 1/198 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+  I  LC+  ++ EA+R+VD M         +T++ ++  L +    +EA   +  M 
Sbjct: 224 YNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYNTLIRGLCKKSMPQEAMHYLRRMM 282

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                PD   YN ++  YC    +   + +LK    +    D  TY +L+ G C  G VE
Sbjct: 283 NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVE 342

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A  L       G       Y  ++  L   G    A++ +          D + +  + 
Sbjct: 343 RALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 402

Query: 286 SKLIGLERFNEANFILKE 303
           + L  +   ++A  ++ +
Sbjct: 403 NGLCKMGNISDATVVMND 420



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
            C   +   ALR++  +   G    A+ +  ++  L       +A  L + M    V P+
Sbjct: 130 FCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPN 185

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           L A+N +L A C +G++     +L K+ +  +  +  TY+  + G C AGR+ EA  L+ 
Sbjct: 186 LAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVD 245

Query: 233 RM 234
            M
Sbjct: 246 GM 247


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 2/229 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD-LC 90
           +P    Y+ L+N    ++ LE  R L +   +        TFN + +       + +   
Sbjct: 370 KPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFL 429

Query: 91  RTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                L+KGF P  S Y+ LI   C+  K++E   +++ M   G     +T++ ++S   
Sbjct: 430 LQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWC 489

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
             K  ++A  L++ M +  + P    YN LL  YC +GNL A   + K+ME+E   A+  
Sbjct: 490 EKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVV 549

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           TY+ L+ G CR G++E+A  LL  M++ G     +TY  +   ++  G+
Sbjct: 550 TYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGF 598



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 102/214 (47%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +K  P    ++ LI   CK + +  AL+V + M   G   + +T++ +++ L    ++ E
Sbjct: 297 NKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNE 356

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L++ M    + P++  YN L+  YC K  L     +   + ++ L  +  T++ L+ 
Sbjct: 357 AKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLH 416

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+ G++EEAF+L + M++ G     STY  ++    R G   +    +     R +K 
Sbjct: 417 GYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKA 476

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           DT  +  L S     +   +A  ++ EM  + LK
Sbjct: 477 DTVTYNILISAWCEKKEPKKAARLIDEMLDKGLK 510



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 7/216 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS---VLTRGKRMEEA 157
           P    ++T+I  LCK+ K+++A  VVD M   GF  + +T++ ++     + R  +M +A
Sbjct: 228 PNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKA 287

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             +++ M E +VSP+   +N L+  +C   NL+A   V ++M+ + L     TY++LV G
Sbjct: 288 DAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNG 347

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  G++ EA VLL  M+         TY  ++    +     +A +     G + +  +
Sbjct: 348 LCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPN 407

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
              F +L        +  EA  + K M    L+ GF
Sbjct: 408 VITFNTLLHGYCKFGKMEEAFLLQKVM----LEKGF 439



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLME-VMKEI---RVSPDLTAYNYLLTAYCFKGNL 189
           + LS ++ +P+LS L +    E  +G +E V KE+   ++SP+L  +N ++   C  G L
Sbjct: 191 YKLSVLSCNPLLSALVK----ENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKL 246

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF---VLLRRMVDDGQSVLYSTY 246
                V+  M+      +  TY+ L+ G C+ GRV + +    +L+ MV++  S    T+
Sbjct: 247 NKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTF 306

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             ++    +    + A+K       + +K     + SL + L    + NEA  +L EM  
Sbjct: 307 NVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLS 366

Query: 307 RDLK 310
            +LK
Sbjct: 367 SNLK 370



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 13/194 (6%)

Query: 6   KLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK-RARD 64
           K+   FL+ Q V++ + F         P ++ Y+ L+     E  +E V+ LLN+ + R 
Sbjct: 423 KMEEAFLL-QKVMLEKGFL--------PNASTYNCLIVGFCREGKMEEVKNLLNEMQCRG 473

Query: 65  CCFNTANTFNFITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEA 122
              +T  T+N + +            R +   LDKG  P    Y+ L+   C    +  A
Sbjct: 474 VKADTV-TYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAA 532

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           L +   M + G   + +T++ ++    R  ++E+A GL+  M E  + P+ T Y  +   
Sbjct: 533 LNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEE 592

Query: 183 YCFKGNLTATSGVL 196
              KG L    G L
Sbjct: 593 MMEKGFLPDIEGHL 606


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 2/233 (0%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F ++ A   +P    Y+ LV     +  +     ++N+ A + C     T+N + N    
Sbjct: 349 FNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCK 408

Query: 83  LSVLSDLCRTLA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +  +SD    +   + KG+ P    ++TLI   CK  K+D AL++V+ M E G     IT
Sbjct: 409 MGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTIT 468

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ +L+ L +  ++ E     + M      P+   YN L+  +C    +   S V+ KM 
Sbjct: 469 YNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS 528

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +E L  DA +++ L+ G CR G +E A++L +++ + G S    T+  ++GA 
Sbjct: 529 QEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 581



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 94/196 (47%), Gaps = 11/196 (5%)

Query: 84  SVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           SVL+ LC+   +  +++ F         P    Y+ LI   C+  K++EA +V+  M++ 
Sbjct: 471 SVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 530

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G    A++F+ ++    R   +E A+ L + ++E   S     +N L+ A+  K N+   
Sbjct: 531 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMA 590

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  +M  +   AD+ TY  L+ G+C+   V+ A++ L  M+  G     ST+  V+ +
Sbjct: 591 EKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINS 650

Query: 253 LLRLGYYAQAVKFVMV 268
           L       QAV  + +
Sbjct: 651 LTVNHRVFQAVGIIHI 666



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 89/205 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I   CK+  + EA  ++      GF    +T+  +++ L     +E A  
Sbjct: 288 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALE 347

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L    +   + PD+  YN L+   C +G +     V+ +M EE    D +TY+ ++ G C
Sbjct: 348 LFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLC 407

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G + +A V++   +  G      T+  ++    +      A++ V       I  DT 
Sbjct: 408 KMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTI 467

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            + S+ + L    + NE N   +EM
Sbjct: 468 TYNSVLNGLCKAGKVNEVNETFQEM 492



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 1/185 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP  +A++ ++  LCK   + EA  ++  + + G  ++  T++  +  L    R+ EA  
Sbjct: 184 FPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVR 243

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M+   V PD+  YN L+   C K         L++M  +    D  TY+ ++ G C
Sbjct: 244 LVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYC 302

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +   V+EA  LL+  V  G      TY  ++  L   G   +A++       + IK D  
Sbjct: 303 KISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 362

Query: 280 LFGSL 284
           ++ SL
Sbjct: 363 VYNSL 367



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 27/296 (9%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R L  K +  +++   R     G  PD+ T   Y+ +++       ++    LL   
Sbjct: 261 TLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFT---YNTIIDGYCKISMVQEATELL--- 314

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLC------RTLARLD----KGF-PRKSAYDTLI 110
            +D  F       F+ +     S+++ LC      R L   +    KG  P    Y++L+
Sbjct: 315 -KDAVFK-----GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV 368

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME--VMKEIR 168
             LC    I  AL+V++ MAE G      T++ +++ L +   + +A  +M   +MK   
Sbjct: 369 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL 428

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             PD+  +N L+  YC +  L +   ++++M E  +  D  TY++++ G C+AG+V E  
Sbjct: 429 --PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVN 486

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
              + M+  G      TY  ++    R     +A K ++      +  D   F +L
Sbjct: 487 ETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL 542



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 1/198 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+  I  LC+  ++ EA+R+VD M         +T++ ++  L +    +EA   +  M 
Sbjct: 225 YNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYNTLIRGLCKKSMPQEAMHYLRRMM 283

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                PD   YN ++  YC    +   + +LK    +    D  TY +L+ G C  G VE
Sbjct: 284 NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVE 343

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A  L       G       Y  ++  L   G    A++ +          D + +  + 
Sbjct: 344 RALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 403

Query: 286 SKLIGLERFNEANFILKE 303
           + L  +   ++A  ++ +
Sbjct: 404 NGLCKMGNISDATVVMND 421



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
            C   +   ALR++  +   G    A+ +  ++  L       +A  L + M    V P+
Sbjct: 131 FCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPN 186

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           L A+N +L A C +G++     +L K+ +  +  +  TY+  + G C AGR+ EA  L+ 
Sbjct: 187 LAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVD 246

Query: 233 RM 234
            M
Sbjct: 247 GM 248


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 103/207 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I   CKL +IDEA  +++ M +GG   + +T+  +L    +  + E+A GL
Sbjct: 288 PNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGL 347

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +EVM E    P+L  YN LL  +C K  +     +L  M ++    +  +Y+ ++ G C+
Sbjct: 348 VEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCK 407

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A +V E  +LL +M+ +       T+  ++ A+ +      A +   +        +   
Sbjct: 408 ATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVT 467

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL   L    RF++A ++L+EM ++
Sbjct: 468 YNSLVHGLCKSRRFDQAEYLLREMTRK 494



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 116/244 (47%), Gaps = 3/244 (1%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C   + T+N + N  +    L D  R L  + D GF P   +Y+T++   CK  +++ AL
Sbjct: 40  CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENAL 99

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +++ M   G     +++  +++ L +  +++EA  +M+ M +    P++  Y  L+  +
Sbjct: 100 WLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGF 159

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL- 242
           C  G+L     +++KM E     +A TY+ ++ G C   +++ A  L + M + G     
Sbjct: 160 CRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPD 219

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
             TY+ ++ +L++ G    A + V     +    +   + SL   L    + +EA  +L+
Sbjct: 220 VFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQ 279

Query: 303 EMNK 306
            M +
Sbjct: 280 RMTR 283



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 3/176 (1%)

Query: 90  CRTLARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           C+ L+ +  KG  P   +Y+T+I  LCK  K+ E + +++ M         +TF+ I+  
Sbjct: 380 CQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 439

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGA 206
           + +  R++ A+ L  +++E   +P+L  YN L+   C          +L++M  ++    
Sbjct: 440 MCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSP 499

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           D  TY+ ++ G C++ RV+ A+ L  +M+ DG +    TY+ V+ +L +  +  +A
Sbjct: 500 DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 555



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 26/243 (10%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR-DCCFNTANTFNFITNTENSL 83
           +SG  P+  T   Y+ LV+     R  +   YLL +  R   C     T+N         
Sbjct: 458 ESGCTPNLVT---YNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN--------- 505

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           +V+  LC++  R+D+ +            P    Y  +I  LCK + +DEA  V+++M +
Sbjct: 506 TVIDGLCKS-KRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLK 564

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            GF   AIT+  ++    +   +++A  +++++      PD+  ++  +     +G L  
Sbjct: 565 NGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQ 624

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +L+ M    L  D  TY+ L+ G C A R E+A  L   M   G     +TY  ++G
Sbjct: 625 AGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVG 684

Query: 252 ALL 254
            L+
Sbjct: 685 HLV 687



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/249 (19%), Positives = 112/249 (44%), Gaps = 23/249 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L++    + ++E    LL+   +  C     ++N         +V++ LC+ 
Sbjct: 358 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYN---------TVIAGLCKA 408

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             ++ +G             P    ++T+I  +CK  ++D A  + +++ E G   + +T
Sbjct: 409 -TKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVT 467

Query: 141 FHPILSVLTRGKRMEEA-WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           ++ ++  L + +R ++A + L E+ ++   SPD+  YN ++   C    +     +  +M
Sbjct: 468 YNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQM 527

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             + L  D  TY  ++   C+   ++EA  +L  M+ +G      TY  ++    + G  
Sbjct: 528 LSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNL 587

Query: 260 AQAVKFVMV 268
            +A++ + +
Sbjct: 588 DKALEILQL 596



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 119/274 (43%), Gaps = 26/274 (9%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SLL     K  + ++  +  S  + G  P+      Y+ ++        +     LL + 
Sbjct: 365 SLLDMFCKKDEVERACQLLSSMIQKGCVPN---VVSYNTVIAGLCKATKVHEGVLLLEQM 421

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTL 109
             + C     TFN         +++  +C+T  R+D  +            P    Y++L
Sbjct: 422 LSNNCVPDIVTFN---------TIIDAMCKTY-RVDIAYELFNLIQESGCTPNLVTYNSL 471

Query: 110 IGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +  LCK ++ D+A  ++ ++  + G     IT++ ++  L + KR++ A+ L   M    
Sbjct: 472 VHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDG 531

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           ++PD   Y+ ++++ C    +   + VL+ M +      A TY  L+ G C+ G +++A 
Sbjct: 532 LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKAL 591

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            +L+ ++  G      T++  +  L + G   QA
Sbjct: 592 EILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQA 625



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 61/137 (44%)

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           PD   YN ++        L     +L++M +     +  +Y+ ++ G C+A RVE A  L
Sbjct: 42  PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG 290
           L +MV  G      +Y  V+  L +L    +A + +     R  + +   +G+L      
Sbjct: 102 LEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 161

Query: 291 LERFNEANFILKEMNKR 307
           +   + A  ++++M +R
Sbjct: 162 VGDLDGAVELVRKMTER 178


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 10/225 (4%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           R    ++   P    Y TLI   C++  ++EALR+ ++M   G     +T++ IL  L  
Sbjct: 288 RLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCE 347

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++++A  L+  M E +V PD    N L+ AYC  G++ +   V KKM E  L  D  T
Sbjct: 348 EGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFT 407

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-- 268
           + AL+ G C+   V+ A   L  M+D G S  YSTY+ ++ +     YY Q  K  ++  
Sbjct: 408 FKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDS-----YYDQDNKEAVIRL 462

Query: 269 ---CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                 + + +D  ++ +L  +L  +++   A  I   M  + +K
Sbjct: 463 PDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMK 507



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 3/213 (1%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P   A   L+  L K +  +   +V   M   G   +   F+ ++    +   +E+A
Sbjct: 157 GFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKA 216

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M+   + PDL  YN L++ YC KG      G+  +ME   +  D  TY++L+ G
Sbjct: 217 EQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYG 276

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            CR GR+ EA  L R +  +G +  + TY  ++    R+    +A++   V     +   
Sbjct: 277 FCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPG 334

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              + S+  KL    +  +AN +L EM++R ++
Sbjct: 335 VVTYNSILRKLCEEGKIKDANRLLNEMSERKVE 367



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 4/206 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK     EAL + D M  GG     +T++ ++    R  RM EA  
Sbjct: 229 FPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREA-- 286

Query: 160 LMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            + + +EI   +P+   Y  L+  YC   +L     + + ME E L     TY++++   
Sbjct: 287 -LRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKL 345

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C  G++++A  LL  M +        T   ++ A  ++G    A+K         +K D 
Sbjct: 346 CEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQ 405

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
             F +L      L   + A   L EM
Sbjct: 406 FTFKALIHGFCKLHEVDSAKEFLFEM 431



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 8/228 (3%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           +GA P+  T   Y  L++      DLE    L      +       T+N I         
Sbjct: 294 NGATPNHVT---YTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGK 350

Query: 86  LSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           + D  R L  +   K  P     +TLI   CK+  +  A++V   M E G      TF  
Sbjct: 351 IKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKA 410

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   ++ A   +  M +   SP  + Y++L+ +Y  + N  A   +  ++  + 
Sbjct: 411 LIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKG 470

Query: 204 LGADARTYDALVLGACRAGRVEEA---FVLLRRMVDDGQSVLYSTYAH 248
           L  D   Y AL+   C+  ++E A   F L++     G SV+Y++ A+
Sbjct: 471 LFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAY 518


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 10/225 (4%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           R    ++   P    Y TLI   C++  ++EALR+ ++M   G     +T++ IL  L  
Sbjct: 288 RLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCE 347

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++++A  L+  M E +V PD    N L+ AYC  G++ +   V KKM E  L  D  T
Sbjct: 348 EGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFT 407

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-- 268
           + AL+ G C+   V+ A   L  M+D G S  YSTY+ ++ +     YY Q  K  ++  
Sbjct: 408 FKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDS-----YYDQDNKEAVIRL 462

Query: 269 ---CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                 + + +D  ++ +L  +L  +++   A  I   M  + +K
Sbjct: 463 PDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMK 507



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 3/213 (1%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P   A   L+  L K +  +   +V   M   G   +   F+ ++    +   +E+A
Sbjct: 157 GFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKA 216

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M+   + PDL  YN L++ YC KG      G+  +ME   +  D  TY++L+ G
Sbjct: 217 EQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYG 276

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            CR GR+ EA  L R +  +G +  + TY  ++    R+    +A++   V     +   
Sbjct: 277 FCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPG 334

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              + S+  KL    +  +AN +L EM++R ++
Sbjct: 335 VVTYNSILRKLCEEGKIKDANRLLNEMSERKVE 367



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 4/206 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK     EAL + D M  GG     +T++ ++    R  RM EA  
Sbjct: 229 FPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREA-- 286

Query: 160 LMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            + + +EI   +P+   Y  L+  YC   +L     + + ME E L     TY++++   
Sbjct: 287 -LRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKL 345

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C  G++++A  LL  M +        T   ++ A  ++G    A+K         +K D 
Sbjct: 346 CEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQ 405

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
             F +L      L   + A   L EM
Sbjct: 406 FTFKALIHGFCKLHEVDSAKEFLFEM 431



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 8/228 (3%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           +GA P+  T   Y  L++      DLE    L      +       T+N I         
Sbjct: 294 NGATPNHVT---YTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGK 350

Query: 86  LSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           + D  R L  +   K  P     +TLI   CK+  +  A++V   M E G      TF  
Sbjct: 351 IKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKA 410

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   ++ A   +  M +   SP  + Y++L+ +Y  + N  A   +  ++  + 
Sbjct: 411 LIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKG 470

Query: 204 LGADARTYDALVLGACRAGRVEEA---FVLLRRMVDDGQSVLYSTYAH 248
           L  D   Y AL+   C+  ++E A   F L++     G SV+Y++ A+
Sbjct: 471 LFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAY 518


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 96/198 (48%), Gaps = 7/198 (3%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGR-LCKLKKIDEALRVVDIMAEGGFGL 136
           N E +  +L ++ R   R  K  P    Y+TLI   +CK   ++EAL ++D M   G   
Sbjct: 147 NLEKARELLEEMIR---RGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAP 203

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             IT++ I+  L    R+ EA    E++K +  SPDL  +N LL  +C  G L     VL
Sbjct: 204 DVITYNSIIHALCVAGRVVEA---AEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVL 260

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           ++M  E +  D  TY  LV G CR G+V+ AF LL  +V  G       Y  ++  L + 
Sbjct: 261 EEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKS 320

Query: 257 GYYAQAVKFVMVCGGRDI 274
           G   +A K V     R+I
Sbjct: 321 GEIEEAHKLVKEMSAREI 338



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 82  SLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           ++S++SDL      + +G+ P    Y+TLI  LCK  ++ EA  + D MA  G   + +T
Sbjct: 370 AVSLISDL------VARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVT 423

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
              ++  L R  R+++AW L+  M   R +P++  Y  L+   C    +     VL  M 
Sbjct: 424 LGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMR 483

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            + +  D   Y  L++     GRV EA  +   MV  G
Sbjct: 484 GQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARG 521



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 18/246 (7%)

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           +L VL ++CR     +   P    Y  L+  LC++ ++  A  +++ +   G+    I +
Sbjct: 256 ALEVLEEMCR-----ENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAY 310

Query: 142 HPILSVLTRGKRMEEAWGLM------EVMKE---IRVSPDLTAYNYLLTAYCFKGNLTAT 192
             ++  L +   +EEA  L+      E++ E   I + P L  YN +L      G+++  
Sbjct: 311 TSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKA 370

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             ++  +       D  TY+ L+ G C+A RV EA  L   M   G      T   V+  
Sbjct: 371 VSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFG 430

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
           L R+G    A   V+    +    +  ++ SL   L   +R ++A  +L  M  +    G
Sbjct: 431 LCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQ----G 486

Query: 313 FKLRDY 318
             L D+
Sbjct: 487 VALDDF 492



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 5/187 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI   CK  +   AL  +  + E         F+ ++  L +    ++A  L
Sbjct: 60  PNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKL 119

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE--KLGADARTYDALV-LG 217
            E M+  RV+PD+  YN +++  C  GNL     +L++M     K   D  TY+ L+  G
Sbjct: 120 FENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAG 179

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIK 275
            C+ G VEEA  +L  M   G +    TY  ++ AL   G   +A + +  M C    + 
Sbjct: 180 ICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSPDLVT 239

Query: 276 LDTELFG 282
            +T L G
Sbjct: 240 FNTLLDG 246



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 9/217 (4%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVV------DIMAEG---GFGLSAITFHPILSVLTR 150
            P   AY +L+  LCK  +I+EA ++V      +I+AE           T++ +L  L +
Sbjct: 304 IPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIK 363

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + +A  L+  +      PD+  YN L+   C    +     +  +M       +  T
Sbjct: 364 DGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVT 423

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
             ++V G CR GRV++A+ L+  M     +     Y  ++  L +      A   +    
Sbjct: 424 LGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMR 483

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           G+ + LD   +  L   +I   R  EA  +  EM  R
Sbjct: 484 GQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVAR 520



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 19/221 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TL+   CK   +  AL V++ M         IT+  +++ L R  +++ A+ L
Sbjct: 235 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 294

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR---------TY 211
           +E +      PD+ AY  L+   C  G +     ++K+M   ++ A+           TY
Sbjct: 295 LEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTY 354

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV----- 266
           + ++ G  + G + +A  L+  +V  G      TY  ++  L +     +A         
Sbjct: 355 NIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMAS 414

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           + C   D+ L + +FG     L  + R ++A  ++ EM+++
Sbjct: 415 LGCFPNDVTLGSVVFG-----LCRVGRVDDAWSLVVEMSRK 450



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 61/134 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ L+  L K        +V   +   G   + +TF  ++    +  +   A   +  +
Sbjct: 29  SYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRAL 88

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E  V+PD+  +N+L+      GN      + + ME  ++  D  TY+ ++ G C++G +
Sbjct: 89  DEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNL 148

Query: 225 EEAFVLLRRMVDDG 238
           E+A  LL  M+  G
Sbjct: 149 EKARELLEEMIRRG 162



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 21/152 (13%)

Query: 40  DLVNAAGHERDLETVRYLLN-----KRARDCC--FNTANTFNFITNTENSLSVLSDLCRT 92
           DLV A G+  D+ T   L++      R R+ C   +   +     N     SV+  LCR 
Sbjct: 376 DLV-ARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCR- 433

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           + R+D  +            P    Y +LI  LCK  ++D+A  V+D M   G  L    
Sbjct: 434 VGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFA 493

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           +  ++  +  G R+ EA  + + M      PD
Sbjct: 494 YRKLIVSMIHGGRVAEAMAMYDEMVARGFLPD 525



 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 57/136 (41%)

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           D+ +YN+LL      G+   T  V K +       +  T+  L+ G C+AG+   A   L
Sbjct: 26  DVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFL 85

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
           R + +   +     +  ++  L + G   QAVK         +  D   + ++ S L   
Sbjct: 86  RALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKS 145

Query: 292 ERFNEANFILKEMNKR 307
               +A  +L+EM +R
Sbjct: 146 GNLEKARELLEEMIRR 161



 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 1/127 (0%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           DL   +A L   FP      +++  LC++ ++D+A  +V  M+      + + +  ++  
Sbjct: 407 DLADEMASL-GCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDG 465

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L +  RM++A  +++ M+   V+ D  AY  L+ +    G +     +  +M       D
Sbjct: 466 LCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPD 525

Query: 208 ARTYDAL 214
             T   L
Sbjct: 526 GSTSKTL 532


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 5/266 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L  +  + ++  + R  T  G  PD  T   ++ L+      R+      L  + 
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCT---FNSLIQGLCLTRNHRVAMELFEEM 426

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGFPRKS-AYDTLIGRLCKLKKI 119
               C     T+N + ++  S   L +    L +++  G  R    Y+TLI   CK  K 
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            EA  + D M   G   +++T++ ++  L + +R+E+A  LM+ M      PD   YN L
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           LT +C  G++   + +++ M       D  TY  L+ G C+AGRVE A  LLR +   G 
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKF 265
           ++    Y  V+  L R     +A+  
Sbjct: 607 NLTPHAYNPVIQGLFRKRKTTEAINL 632



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 138/338 (40%), Gaps = 68/338 (20%)

Query: 25  KSGAFPDEPTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           + G FPD+ T   ++ LVN    AGH +    +  ++ +   D    T N          
Sbjct: 288 QDGFFPDQYT---FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYN---------- 334

Query: 82  SLSVLSDLCR------TLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
             SV+S LC+       +  LD+       P    Y+TLI  LCK  +++EA  +  ++ 
Sbjct: 335 --SVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392

Query: 131 EGGFGLSAITFHPILS--VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
             G      TF+ ++    LTR  R+  A  L E M+     PD   YN L+ + C KG 
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRV--AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450

Query: 189 LTATSGVLKKME---------------------------EE--------KLGADARTYDA 213
           L     +LK+ME                           EE         +  ++ TY+ 
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+ G C++ RVE+A  L+ +M+ +GQ     TY  ++    R G   +A   V       
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            + D   +G+L S L    R   A+ +L+ +  + + +
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL 608



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 115/267 (43%), Gaps = 6/267 (2%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           L++ L     +  ++L+       G  PDE T   +  ++     E DL+    +  +  
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKT---FTTVMQGYIEEGDLDGALRIREQMV 251

Query: 63  RDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKI 119
              C  +  + N I +    E  +    +  + ++  D  FP +  ++TL+  LCK   +
Sbjct: 252 EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHV 311

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
             A+ ++D+M + G+     T++ ++S L +   ++EA  +++ M     SP+   YN L
Sbjct: 312 KHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTL 371

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           ++  C +  +   + + + +  + +  D  T+++L+ G C       A  L   M   G 
Sbjct: 372 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFV 266
                TY  ++ +L   G   +A+  +
Sbjct: 432 EPDEFTYNMLIDSLCSKGKLDEALNML 458



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 101/216 (46%), Gaps = 5/216 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PDE T   Y+ L+++   +  L+    +L +     C  +  T+N + +     +  
Sbjct: 430 GCEPDEFT---YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486

Query: 87  SDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +       ++  G  R S  Y+TLI  LCK +++++A +++D M   G      T++ +
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L+   RG  +++A  +++ M      PD+  Y  L++  C  G +   S +L+ ++ + +
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
                 Y+ ++ G  R  +  EA  L R M++  ++
Sbjct: 607 NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEA 642



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 1/198 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S ++ LI  LC+  ++  A+ +++ M   G      TF  ++        ++ A  +
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRI 246

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME-EEKLGADARTYDALVLGAC 219
            E M E   S    + N ++  +C +G +      +++M  ++    D  T++ LV G C
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +AG V+ A  ++  M+ +G      TY  V+  L +LG   +AV+ +     RD   +T 
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTV 366

Query: 280 LFGSLGSKLIGLERFNEA 297
            + +L S L    +  EA
Sbjct: 367 TYNTLISTLCKENQVEEA 384



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 1/185 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  + T++    +   +D ALR+ + M E G   S ++ + I+    +  R+E+A   
Sbjct: 222 PDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNF 281

Query: 161 MEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ M  +    PD   +N L+   C  G++     ++  M +E    D  TY++++ G C
Sbjct: 282 IQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC 341

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G V+EA  +L +M+    S    TY  ++  L +     +A +   V   + I  D  
Sbjct: 342 KLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVC 401

Query: 280 LFGSL 284
            F SL
Sbjct: 402 TFNSL 406



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 124/302 (41%), Gaps = 9/302 (2%)

Query: 14  PQSVLVTRSFTKSGAFPD-EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           P      R F  +   P+  P  A Y++++   G     + ++ +L       C    +T
Sbjct: 61  PDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTST 120

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDT-LIGRLCKLKKIDEALRVVDI--- 128
           F  +  +     +  ++   +  +   F  K   DT    R+  L     +L++V+I   
Sbjct: 121 FLILIESYAQFELQDEILSVVDWMIDEFGLKP--DTHFYNRMLNLLVDGNSLKLVEISHA 178

Query: 129 -MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M+  G      TF+ ++  L R  ++  A  ++E M    + PD   +  ++  Y  +G
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD-DGQSVLYSTY 246
           +L     + ++M E        + + +V G C+ GRVE+A   ++ M + DG      T+
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             ++  L + G+   A++ + V        D   + S+ S L  L    EA  +L +M  
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358

Query: 307 RD 308
           RD
Sbjct: 359 RD 360



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  LCK  +++ A +++  +   G  L+   ++P++  L R ++  EA  L
Sbjct: 573 PDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINL 632

Query: 161 M-EVMKEIRVSPDLTAYNYLLTAYCFKG 187
             E++++    PD  +Y  +    C  G
Sbjct: 633 FREMLEQNEAPPDAVSYRIVFRGLCNGG 660


>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 459

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 6/236 (2%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDLC 90
           + A +  ++++ GH R  E    + N+     C  T   +N + +      + +    L 
Sbjct: 146 SPATFSAVISSYGHSRLAEQAVEVFNRLPHFGCPQTTEVYNALLDALCANGNFAGAYKLL 205

Query: 91  RTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           R +AR  KG  P ++ + TL+   C   K+ EA   +D MA  GF         ++  L 
Sbjct: 206 RRMAR--KGVAPDRATFSTLVDAWCASGKLREAQAFLDDMATRGFRPPVRGRDLLVDGLV 263

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R  R+EEA      + +  V PD+  +N L  A C  G++    G+L       +  D  
Sbjct: 264 RAGRLEEAKAFALRITKEGVLPDVATFNSLAQALCDAGDVEFAVGLLADASSRGMCPDIS 323

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           TY  ++    +AGR+EEAF L    ++DG     S YA ++ AL + G +A A  F
Sbjct: 324 TYKVMLPAVAKAGRIEEAFRLFYAAIEDGHRPFPSLYAAIVKALCKAGRFADAFAF 379



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 99/259 (38%), Gaps = 2/259 (0%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-G 99
           ++ AA     L   R+L   RA+     +A+ F+ +        + + L    + +   G
Sbjct: 83  VIRAAAPSEPLHAARFLAWIRAKPNFSPSADHFDALLLPLARARLFTHLWTQASDMRALG 142

Query: 100 FPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
            P   A +  +I      +  ++A+ V + +   G   +   ++ +L  L        A+
Sbjct: 143 LPLSPATFSAVISSYGHSRLAEQAVEVFNRLPHFGCPQTTEVYNALLDALCANGNFAGAY 202

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  M    V+PD   ++ L+ A+C  G L      L  M         R  D LV G 
Sbjct: 203 KLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMATRGFRPPVRGRDLLVDGL 262

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            RAGR+EEA     R+  +G     +T+  +  AL   G    AV  +     R +  D 
Sbjct: 263 VRAGRLEEAKAFALRITKEGVLPDVATFNSLAQALCDAGDVEFAVGLLADASSRGMCPDI 322

Query: 279 ELFGSLGSKLIGLERFNEA 297
             +  +   +    R  EA
Sbjct: 323 STYKVMLPAVAKAGRIEEA 341


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 17/262 (6%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT- 77
           +     + G  P  PT   Y+ L++    E  +E  + +L+    + C     T+N +  
Sbjct: 131 ILDEMVEKGLVPSVPT---YNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELIC 187

Query: 78  ------NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
                 N   ++++LS +  +  RL    P    Y++LI   CK+  +D A R++++M E
Sbjct: 188 GFCRKKNVHRAMALLSKMLES--RLT---PSVVTYNSLIHGQCKIGYLDSAYRLLNLMNE 242

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G      T+   +  L +  R+EEA  L   +KE  +  +   Y  L+  YC  G +  
Sbjct: 243 NGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDD 302

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
            + +L +M  E    ++ TY+AL+ G C+  +V+EA +L+  M+  G      TY  ++ 
Sbjct: 303 ANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIV 362

Query: 252 ALLRLG--YYAQAVKFVMVCGG 271
           A+L+ G   YA  +   MV  G
Sbjct: 363 AMLKEGDFDYAHRILDQMVSSG 384



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 98/208 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  +CK  K++E  R++D M E G   S  T++ ++    +   +E A  +
Sbjct: 107 PNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEI 166

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M     +P+   YN L+  +C K N+     +L KM E +L     TY++L+ G C+
Sbjct: 167 LDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCK 226

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G ++ A+ LL  M ++G      TY+  +  L + G   +A         + IK +  +
Sbjct: 227 IGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVI 286

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + +L        + ++AN +L  M   D
Sbjct: 287 YTALIDGYCKAGKMDDANSLLDRMLTED 314



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 95/216 (43%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D  +P    Y  ++  L +  +  EA+ +   M E G   +  T+  +++ + +  ++
Sbjct: 66  REDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKL 125

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           EE   +++ M E  + P +  YN L+  YC +G + A   +L  M       + RTY+ L
Sbjct: 126 EEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNEL 185

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G CR   V  A  LL +M++   +    TY  ++    ++GY   A + + +     +
Sbjct: 186 ICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGV 245

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             D   +      L    R  EAN +   + ++ +K
Sbjct: 246 VPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIK 281



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  S Y+ LI  LCK +K+ EAL +++ M + G   +  T+  ++  + +    + A  
Sbjct: 316 LPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHR 375

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +++ M      PD+  Y   + A+C +GN+     ++  M E  +  DA TY  ++    
Sbjct: 376 ILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYG 435

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             G +  AF +L+RM D G    + TY+ ++  LL+
Sbjct: 436 GLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLK 471



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 1/159 (0%)

Query: 98  KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KG  R   +Y  LI  LC++ ++DE + +   M E     +  T+  I+  L    R  E
Sbjct: 33  KGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRME 92

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L   M+E    P++  Y  ++ A C +  L     +L +M E+ L     TY+AL+ 
Sbjct: 93  AINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALID 152

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           G C+ G VE A  +L  M  +  +    TY  ++    R
Sbjct: 153 GYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCR 191



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 113/274 (41%), Gaps = 2/274 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y++L+     ++++     LL+K        +  T+N + + +  +  L    R 
Sbjct: 177 PNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRL 236

Query: 93  LARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  +++    P +  Y   I  LCK  +I+EA  + + + E G   + + +  ++    +
Sbjct: 237 LNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCK 296

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +M++A  L++ M      P+ + YN L+   C +  +     +++ M ++ L     T
Sbjct: 297 AGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPT 356

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  L++   + G  + A  +L +MV  G       Y   + A    G   +A   + +  
Sbjct: 357 YTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMF 416

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            R +  D   +  +     GL   N A  +LK M
Sbjct: 417 ERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRM 450



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 31/265 (11%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P S+ Y+ L++    ER ++    L+    +     T  T+  +              R 
Sbjct: 317 PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRI 376

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++   G+ P    Y   I   C    I EA  ++ +M E G    A+T+  ++     
Sbjct: 377 LDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGG 436

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLL--------------TAYC------FKGNLT 190
              +  A+ +++ M +    P    Y+ L+               A C      F  ++ 
Sbjct: 437 LGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVA 496

Query: 191 ATSGVLK---------KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
               ++K         KM E     +  TY  L++G C+ GR+  A  L   M + G S 
Sbjct: 497 DVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSP 556

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFV 266
             + Y  ++     LG Y  AV+ V
Sbjct: 557 SEAIYNSLLNCCCELGIYGDAVRLV 581



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/144 (19%), Positives = 60/144 (41%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           ++ A  V ++M + G   + +++  ++  L    R++E   + + M+E    P +  Y  
Sbjct: 20  VNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTV 79

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           ++ A    G       +  +M E     +  TY  ++   C+  ++EE   +L  MV+ G
Sbjct: 80  IVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKG 139

Query: 239 QSVLYSTYAHVMGALLRLGYYAQA 262
                 TY  ++    + G    A
Sbjct: 140 LVPSVPTYNALIDGYCKEGMVEAA 163



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 9/140 (6%)

Query: 179 LLTAYCFKGNLTATS---------GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           ++  YC  GNL   +          V   M ++    +  +Y  L+ G C  GRV+E   
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           + ++M +D       TY  ++ AL   G   +A+        R  + +   +  + + + 
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120

Query: 290 GLERFNEANFILKEMNKRDL 309
              +  E   IL EM ++ L
Sbjct: 121 KETKLEEGRRILDEMVEKGL 140


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 114/239 (47%), Gaps = 17/239 (7%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN------ 78
           K G  PD  T   Y  L++      ++   +++ +  +R      A+++N + N      
Sbjct: 297 KQGVIPDVVT---YSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIK 353

Query: 79  -TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
             + +LS+  ++C       KG  P    Y++LI  LCKL +I  A ++VD M   G   
Sbjct: 354 MVDEALSLFKEMCC------KGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPA 407

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             +T++ ++ VL +   +++A  L++ +K+  + P +  YN L+   C  G L     V 
Sbjct: 408 DILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVF 467

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + +  +    +A TY+ ++ G C+ G   EA VLL +M ++G      TY  ++ AL R
Sbjct: 468 QDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFR 526



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 88/171 (51%), Gaps = 1/171 (0%)

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           T++RL    P   +Y+ +I  L K+K +DEAL +   M   G     +T++ ++  L + 
Sbjct: 329 TMSRLGVA-PHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKL 387

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            R+  AW L++ M    +  D+  YN L+   C   ++     ++KK++++ +     TY
Sbjct: 388 GRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTY 447

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + L+ G C+ GR++ A  + + ++  G SV   TY  ++  L + G + +A
Sbjct: 448 NILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEA 498



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 113/240 (47%), Gaps = 2/240 (0%)

Query: 69  TANTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVV 126
           T  TFN + N    L  ++      A++ K G+ P    ++TLI  +C   K+ EAL   
Sbjct: 93  TIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFH 152

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           D +   GF L  +++  +++ L +      A  +++ ++   V+ D+  YN ++ + C  
Sbjct: 153 DHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKD 212

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             ++    +  +M  +++  D  T+++L+LG C  G+++EAF L   MV    +    T+
Sbjct: 213 KAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTF 272

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           + ++ AL + G   +A   + V   + +  D   + SL      +   N+A  +   M++
Sbjct: 273 SILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSR 332



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 117/275 (42%), Gaps = 21/275 (7%)

Query: 37  YYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL 96
           ++ D V A G   D  + R L+N   +            I  T  +L +L  +   L   
Sbjct: 150 HFHDHVIALGFHLDQVSYRTLINGLCK------------IGETRAALQMLKKIEGKLVNT 197

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D        Y+ +I  LCK K + +A ++   M         +TF+ ++       +++E
Sbjct: 198 DV-----VMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKE 252

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+GL   M    ++PD+  ++ L+ A C  GN+T    +L  M ++ +  D  TY +L+ 
Sbjct: 253 AFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMD 312

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDI 274
           G C    V +A  +   M   G +    +Y  ++  L ++    +A+     M C G  I
Sbjct: 313 GYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKG--I 370

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             DT  + SL   L  L R + A  ++ EM+   +
Sbjct: 371 APDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGI 405



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 87/210 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++LI   C + ++ EA  +   M          TF  ++  L +   +  A  +
Sbjct: 232 PDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNM 291

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + VM +  V PD+  Y+ L+  YC    +     V   M    +   A +Y+ ++ G  +
Sbjct: 292 LAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGK 351

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V+EA  L + M   G +    TY  ++  L +LG  + A + V       I  D   
Sbjct: 352 IKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILT 411

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + SL   L      ++A  ++K++  + ++
Sbjct: 412 YNSLIDVLCKNHHIDKAIALVKKIKDQGIQ 441



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 32/170 (18%), Positives = 74/170 (43%), Gaps = 2/170 (1%)

Query: 137 SAITFHPILSVLTRGK--RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
           S + F+ IL  + +        A  L   ++   ++P +  +N L+  YC  G +T    
Sbjct: 56  SIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFS 115

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +  K+ +        T++ L+ G C  G+++EA      ++  G  +   +Y  ++  L 
Sbjct: 116 IFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLC 175

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           ++G    A++ +    G+ +  D  ++  + + L   +  ++A  +  EM
Sbjct: 176 KIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEM 225


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 100/206 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCKL  +  A  VV  M EGGF  + +TF+ ++    +   +++A  L
Sbjct: 212 PNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKL 271

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M    + P++  Y+ L+   C          VL++M+   +  DA TY AL+ G C+
Sbjct: 272 LGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCK 331

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A ++EEA  +LRRM   G +     Y+ ++ A  + G   +A K +     +    D   
Sbjct: 332 ADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVT 391

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + ++   L  L +  EA  IL++M +
Sbjct: 392 YNTVIDGLCKLGKIAEAQVILEQMQE 417



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK +K  EA  V++ M   G    A T+  ++  L +  ++EEA  +
Sbjct: 282 PNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQM 341

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M     +PD+  Y+ ++ A+C  G L      L++M +++   D  TY+ ++ G C+
Sbjct: 342 LRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 401

Query: 221 AGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            G++ EA V+L +M + G  +    TY+ V+  L +     +A K +          D  
Sbjct: 402 LGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVV 461

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            + ++   L    R  EA ++L+ M +
Sbjct: 462 TYTTIIDGLCKCGRLEEAEYLLQGMKR 488



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 100/236 (42%), Gaps = 32/236 (13%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT----------- 149
           P   +Y+ +I   C    +  AL +++ M   GF   A T  PI++ +            
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDH 169

Query: 150 ---------------------RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
                                R K++EEA  L+E M+E    P+L  YN L+ A C    
Sbjct: 170 LRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSM 229

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           + A   V+KKM E     +  T+++LV G C+ G V++A  LL  MV  G      TY+ 
Sbjct: 230 VGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSA 289

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           ++  L +   + +A + +     R +  D   + +L   L   ++  EA  +L+ M
Sbjct: 290 LIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM 345



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 131/300 (43%), Gaps = 10/300 (3%)

Query: 10  KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNT 69
           KFL  + VL        G  PD  T   Y  L++       +E    +L + A   C   
Sbjct: 299 KFLEAKEVL--EEMKTRGVTPDAFT---YSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 353

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVD 127
              ++ I +       L +  +TL  + K    P    Y+T+I  LCKL KI EA  +++
Sbjct: 354 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILE 413

Query: 128 IMAEGGFGLS-AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
            M E G  L   +T+  +++ L +   + EA  L++ M +   +PD+  Y  ++   C  
Sbjct: 414 QMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC 473

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G L     +L+ M+      +  TY  L+ G C+A +V+EA  ++  M + G      TY
Sbjct: 474 GRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTY 533

Query: 247 AHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             ++  L   G   +A + V  M  G  +   D   + ++ + L+  +   EA  +L++M
Sbjct: 534 NTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 98/207 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI    + KK++EA+++++ M E G   + +T++ ++  L +   +  A  +
Sbjct: 177 PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 236

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E   +P++  +N L+  +C +GN+     +L  M  + +  +  TY AL+ G C+
Sbjct: 237 VKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 296

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           + +  EA  +L  M   G +    TY+ ++  L +     +A + +    G     D  +
Sbjct: 297 SQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 356

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + S+        +  EA   L+EM K+
Sbjct: 357 YSSIIHAFCKSGKLLEAQKTLQEMRKQ 383



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 3/172 (1%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           GF  +A +++ +L VL R K+  EA  L          PD+ +YN +++ +C  G+L A 
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L++M+      DA T+  ++     AG ++ A   LR M  D   V   TY  ++ A
Sbjct: 132 LELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVV---TYTALIAA 188

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             R     +A+K +     R    +   +  L   L  L     A  ++K+M
Sbjct: 189 FARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 240



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 7/152 (4%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
             K+G  PD  T   Y  +++       LE   YLL    R  C     T+  + +    
Sbjct: 451 MCKAGCNPDVVT---YTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 507

Query: 83  LSVLSDLCRTLARL-DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--A 138
              + +  R +  + + G P     Y+T++  LC   +I EA ++V  M +G    S  A
Sbjct: 508 ARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDA 567

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
            T+  I++ L     ++EA  L+E MK    S
Sbjct: 568 ATYRTIVNALMSSDLVQEAEQLLEQMKSTTSS 599


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 13/286 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    ++ L++A     D+E    LLN+      F    T+N + +      +  +    
Sbjct: 220 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 279

Query: 93  LARLDKG--FPRKSAYDTLIGRLCK-LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
             R+++G   P    Y++LI   C+ +  ++EALR+ ++M   G     +T++ IL  L 
Sbjct: 280 QDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLC 339

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              ++++A  L+  M E +V PD    N L+ AYC  G++ +   V KKM E  L  D  
Sbjct: 340 EEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQF 399

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV- 268
           T+ AL+ G C+   V+ A   L  M+D G S  YSTY+ ++ +     YY Q  K  ++ 
Sbjct: 400 TFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDS-----YYDQDNKEAVIR 454

Query: 269 ----CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  + + +D  ++ +L  +L  +++   A  I   M  + +K
Sbjct: 455 LPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMK 500



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 2/182 (1%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P   A   L+  L K +  +   +V   M   G   +   F+ ++    +   +E+A
Sbjct: 182 GFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKA 241

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M+   + PDL  YN L++ YC KG      G+  +ME   +  D  TY++L+ G
Sbjct: 242 EQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYG 301

Query: 218 ACR-AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
            CR    +EEA  L   M  +G      TY  ++  L   G    A + +     R ++ 
Sbjct: 302 FCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEP 361

Query: 277 DT 278
           D 
Sbjct: 362 DN 363



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     +TLI   CK+  +  A++V   M E G      TF  ++    +   ++ A   
Sbjct: 361 PDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEF 420

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +   SP  + Y++L+ +Y  + N  A   +  ++  + L  D   Y AL+   C+
Sbjct: 421 LFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCK 480

Query: 221 AGRVEEA---FVLLRRMVDDGQSVLYSTYAH 248
             ++E A   F L++     G SV+Y++ A+
Sbjct: 481 IDKIESAERIFTLMQGKGMKGDSVVYTSLAY 511


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 123/277 (44%), Gaps = 7/277 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN--TFNFITNTENSLSVLSDL 89
           +P    Y+ +++      +LE  R LL +  R    +  +  T+N + N     S + + 
Sbjct: 129 KPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREA 188

Query: 90  CRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           C    ++      P     + L+  +CK   ++EAL ++D M   G     IT++ I+  
Sbjct: 189 CAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHA 248

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++ EA    E++K +  SPDL  +N LL  +C  G L     VL++M  E +  D
Sbjct: 249 LCVAGKVVEA---AEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPD 305

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY  LV G CR G+V+ AF LL  +V  G       Y  ++  L + G   +A K V 
Sbjct: 306 VITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVK 365

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
               R  +    ++ SL S        ++A  IL EM
Sbjct: 366 EMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEM 402



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 90/207 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TL+   CK   +  AL V++ M         IT+  +++ L R  +++ A+ L
Sbjct: 269 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 328

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E +      PD+ AY  L+   C  G +     ++K+M           Y +LV G CR
Sbjct: 329 LEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCR 388

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG V +A  +L  MV         TY  V+G L++ G  ++AV  +     R    D   
Sbjct: 389 AGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVT 448

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + +L   L    R  EA  +  EM  R
Sbjct: 449 YNTLIDGLCKANRVREACDLADEMASR 475



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 82  SLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           ++S++SDL      + +G+ P    Y+TLI  LCK  ++ EA  + D MA  G   + +T
Sbjct: 430 AVSLISDL------VARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVT 483

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
              ++  L R  R+++AW L+  M   R +P++  Y  L+   C    +     VL  M 
Sbjct: 484 LGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMR 543

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            + +  D   Y  L++     GRV EA  +   MV  G
Sbjct: 544 GQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARG 581



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   AY +L+  LCK  +I+EA ++V  M+  G     + +  ++S   R   + +A  
Sbjct: 338 IPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKARE 397

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M  I + P L  YN +L      G+++    ++  +       D  TY+ L+ G C
Sbjct: 398 ILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLC 457

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +A RV EA  L   M   G      T   V+  L R+G    A   V+    +    +  
Sbjct: 458 KANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVV 517

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDY 318
           ++ SL   L   +R ++A  +L  M  +    G  L D+
Sbjct: 518 VYTSLIDGLCKSDRMDDACMVLDAMRGQ----GVALDDF 552



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 15/231 (6%)

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           +L VL ++CR     +   P    Y  L+  LC++ ++  A  +++ +   G+    I +
Sbjct: 290 ALEVLEEMCR-----ENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAY 344

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++  L +   +EEA  L++ M        +  Y+ L++ YC  GN+     +L +M  
Sbjct: 345 TSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVS 404

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             +     TY+ ++ G  + G + +A  L+  +V  G      TY  ++  L +     +
Sbjct: 405 INMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVRE 464

Query: 262 AVKFV-----MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           A           C   D+ L + +FG     L  + R ++A  ++ EM+++
Sbjct: 465 ACDLADEMASRGCFPNDVTLGSVVFG-----LCRVGRVDDAWSLVVEMSRK 510



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI   CK  +   AL  +  + E         F+ ++  L +    ++A  L
Sbjct: 60  PNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKL 119

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE--KLGADARTYDALVLGA 218
            E M+  RV P++  YN +++  C  GNL     +L++M  +  K   D  TY+ L+   
Sbjct: 120 FENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAF 179

Query: 219 CRAGRVEEAFVLLRRM 234
            RA R+ EA     +M
Sbjct: 180 YRASRIREACAFREKM 195



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/307 (19%), Positives = 114/307 (37%), Gaps = 23/307 (7%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           ++P+++ V     +    PD  T   Y  LVN       ++   YLL +  R        
Sbjct: 286 MLPRALEVLEEMCRENILPDVIT---YTILVNGLCRVGQVQVAFYLLEEIVRQ------- 335

Query: 72  TFNFITNTENSLSVLSDLCRT-----LARLDKGFPRKSA------YDTLIGRLCKLKKID 120
              +I +     S++  LC++       +L K    +        Y +L+   C+   + 
Sbjct: 336 --GYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVH 393

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A  ++  M          T++ +L  L +   + +A  L+  +      PD+  YN L+
Sbjct: 394 KAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLI 453

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
              C    +     +  +M       +  T  ++V G CR GRV++A+ L+  M     +
Sbjct: 454 DGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHA 513

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
                Y  ++  L +      A   +    G+ + LD   +  L   +    R  EA  +
Sbjct: 514 PNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAM 573

Query: 301 LKEMNKR 307
             EM  R
Sbjct: 574 YDEMVAR 580



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 2/163 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ L+  L K        +V   +   G   + +TF  ++    +  +   A   +  +
Sbjct: 29  SYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRAL 88

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E  V+PD+  +N L+      GN      + + ME  ++  +  TY+ ++ G C++G +
Sbjct: 89  DEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNL 148

Query: 225 EEAFVLLRRMVDDG--QSVLYSTYAHVMGALLRLGYYAQAVKF 265
           E+A  LL  M+  G   +    TY  ++ A  R     +A  F
Sbjct: 149 EKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAF 191



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 25/172 (14%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           I ++V +       G  PD  T   Y+ L++       +     L ++ A   CF    T
Sbjct: 427 ISKAVSLISDLVARGYVPDVVT---YNTLIDGLCKANRVREACDLADEMASRGCFPNDVT 483

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKID 120
                      SV+  LCR + R+D  +            P    Y +LI  LCK  ++D
Sbjct: 484 LG---------SVVFGLCR-VGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMD 533

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           +A  V+D M   G  L    +  ++  ++ G R+ EA  + + M      PD
Sbjct: 534 DACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPD 585


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 115/231 (49%), Gaps = 5/231 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + +LSVL D+     R     P    Y+TL+   C+  ++D A R+VD+M EGG   + +
Sbjct: 174 KEALSVLRDM-----RGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLV 228

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF+ +++ + +  RME+A  + + M +  ++PD  +YN L+  YC  G       V  +M
Sbjct: 229 TFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEM 288

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             + +  D  T+ +L+   C+AG +E A  L+R M + G  +   T+  ++    + G+ 
Sbjct: 289 TRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFL 348

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             A+  V       I+     + +L +    + R +EA  +++EM  + +K
Sbjct: 349 DDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVK 399



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 130/304 (42%), Gaps = 5/304 (1%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           L+R L  +    +++ V R    +G    +P +  Y+ LV A     +++    L++   
Sbjct: 163 LVRALCGRGHRKEALSVLRDMRGAGC---DPNAVTYNTLVAAFCRAGEVDRAERLVDMMR 219

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKID 120
                    TFN + N       + D  +    + K G  P   +Y+TL+G  CK+    
Sbjct: 220 EGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSH 279

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EAL V   M   G     +TF  ++ V+ +   +E A GL+  M+E  +  +   +  L+
Sbjct: 280 EALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALI 339

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C KG L      +++M + ++      Y+AL+ G C  GR++EA  L+R M   G  
Sbjct: 340 DGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVK 399

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
               TY+ ++ A  + G    A +         +  D   + SL   L   +R  +A+ +
Sbjct: 400 PDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVL 459

Query: 301 LKEM 304
            K M
Sbjct: 460 FKNM 463



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT-RGKRMEEAWG 159
           P   AY+ ++  L     +  A R  D M   G   +  T++ ++  L  RG R +EA  
Sbjct: 121 PSVLAYNAVLLALSD-ASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHR-KEALS 178

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M+     P+   YN L+ A+C  G +     ++  M E  L  +  T++++V G C
Sbjct: 179 VLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGIC 238

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +AGR+E+A  +   MV +G +    +Y  ++G   ++G   +A+        + I  D  
Sbjct: 239 KAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVV 298

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            F SL   +        A  +++EM +R L+M
Sbjct: 299 TFTSLIHVMCKAGNLERAVGLVREMRERGLQM 330



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 66/153 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C + ++DEA  +V  M   G     +T+  ILS   +      A+ L
Sbjct: 365 PSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQL 424

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  V PD   Y+ L+   C +  L     + K M    L  D  TY +L+ G C+
Sbjct: 425 NQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCK 484

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            G VE A  L   MV  G      TY+ ++  L
Sbjct: 485 EGNVERALSLHDEMVKAGVLPDVVTYSVLINGL 517



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  LI   CK   +D+AL  V  M +     S + ++ +++      RM+EA  L+  M+
Sbjct: 335 FTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREME 394

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V PD+  Y+ +L+AYC  G+  +   + ++M E  +  DA TY +L+   C   R+ 
Sbjct: 395 AKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLG 454

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +A VL + M+  G      TY  ++    + G   +A+  
Sbjct: 455 DAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSL 494



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++   CK      A ++   M E G    AIT+  ++ VL   KR+ +A  L
Sbjct: 400 PDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVL 459

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M  + + PD   Y  L+  +C +GN+     +  +M +  +  D  TY  L+ G  +
Sbjct: 460 FKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSK 519

Query: 221 AGRVEEAFVLLRRM 234
           + R +EA  LL ++
Sbjct: 520 SARTKEAQRLLFKL 533



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 17/182 (9%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +LI   CK   ++ AL + D M + G     +T+  +++ L++  R +EA  L
Sbjct: 470 PDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRL 529

Query: 161 M----------------EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +                 +M+  R + +L +   LL  +C KG +     V + + +   
Sbjct: 530 LFKLYHEEPVPANIKYDALMRCCR-NAELKSVLALLKGFCMKGLMNEADKVYQSILDRNW 588

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D   Y  L+ G CR G V +A    ++M+  G +   ++   ++  L   G   +A +
Sbjct: 589 NLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQ 648

Query: 265 FV 266
            +
Sbjct: 649 VI 650



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y +LI  LC+ K++ +A  +   M   G     +T+  ++    +   +E A  
Sbjct: 434 LPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALS 493

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVL-- 216
           L + M +  V PD+  Y+ L+              +L K+  EE + A+ + YDAL+   
Sbjct: 494 LHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIK-YDALMRCC 552

Query: 217 -------------GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
                        G C  G + EA  + + ++D   ++  S Y+ ++    R G   +A+
Sbjct: 553 RNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKAL 612

Query: 264 KF---VMVCG 270
            F   ++ CG
Sbjct: 613 SFHKQMLQCG 622


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 3/255 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ L+NA   +  L   R LL +  RD    T  T+N + +    L  +    + 
Sbjct: 241 PDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKV 300

Query: 93  LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS-AITFHPILSVLT 149
           +  +   GF P    Y+ L   LC+  K+DEA R+ D M      L   +T++ ++    
Sbjct: 301 VESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACF 360

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + +   +A  L+E M++  V P L  +N ++ + C +G L    G L+K+ EE L  D  
Sbjct: 361 KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVI 420

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ L+   C+AG V +AF L+  MV  G  +   T   V+  L ++  Y  A + +   
Sbjct: 421 TYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSP 480

Query: 270 GGRDIKLDTELFGSL 284
             R    D   +G++
Sbjct: 481 PQRGFVPDEVSYGTV 495



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 1/208 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P + +Y T++    K    + ALR+ D M E     S  T++ ++  L R +R++E
Sbjct: 483 RGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKE 542

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A   +  + E  + PD T YN ++ AYC +G+L        KM E     D  T + L+ 
Sbjct: 543 AIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMN 602

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C  G++++A  L    V+ G+ V   TY  ++ ++ ++G    A+ F      + ++ 
Sbjct: 603 GLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQP 662

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           D   +  + S L    R  EA+ +L ++
Sbjct: 663 DAFTYNVVLSALSEAGRSEEAHNMLHKL 690



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 2/165 (1%)

Query: 144 ILSVLTRGKRM--EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           +LS L+R      + +  +   + E+R+ P+   +N L+  +C KG L      L  M+ 
Sbjct: 177 VLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQG 236

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             L  DA TY+ L+   CR G + EA  LL RM  DG +    TY  ++ A  RLG+  Q
Sbjct: 237 FGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQ 296

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           A K V        + D   +  L   L    + +EA  +  EM +
Sbjct: 297 ATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMER 341



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 118/275 (42%), Gaps = 40/275 (14%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           TFN + +T  S   L+D   TL+ + +GF   P    Y+TL+   C+   + EA  ++  
Sbjct: 210 TFNLLVHTHCSKGTLADALATLSTM-QGFGLSPDAVTYNTLLNAHCRKGMLGEARALLAR 268

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   +  T++ ++S   R   +++A  ++E M      PDL  YN L    C  G 
Sbjct: 269 MKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGK 328

Query: 189 L--------------TATSGV----------------------LKKMEEEKLGADARTYD 212
           +              TA   V                      L++M ++ +     T++
Sbjct: 329 VDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHN 388

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
            +V   C+ G++EEA   L ++ ++G +    TY  ++ A  + G  A+A   +    G+
Sbjct: 389 IVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGK 448

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            +K+DT    ++   L  ++R+ +A  +L    +R
Sbjct: 449 GLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQR 483



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 100/210 (47%), Gaps = 11/210 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLN----KRARDCCFNTANT-FNFITNTENSLSVLS 87
           PTS   D  ++A    R       LL+    +R        AN   + ++ + ++L   S
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192

Query: 88  -DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPI 144
            D+ R+L  L +  P    ++ L+   C    + +AL  +  M   GFGLS  A+T++ +
Sbjct: 193 LDVFRSLIEL-RLHPNHYTFNLLVHTHCSKGTLADALATLSTMQ--GFGLSPDAVTYNTL 249

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L+   R   + EA  L+  MK   ++P    YN L++A+   G +   + V++ M     
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGF 309

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRM 234
             D RTY+ L +G C+AG+V+EAF L   M
Sbjct: 310 EPDLRTYNVLAVGLCQAGKVDEAFRLKDEM 339



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 104/245 (42%), Gaps = 11/245 (4%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           S A PD  T   Y+ LV+A    R       LL +        T  T N +     SL  
Sbjct: 343 STALPDVVT---YNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVK---SLCK 396

Query: 86  LSDLCRTLARLDK----GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
              L   L +L+K    G  P    Y+TLI   CK   + +A  ++D M   G  +   T
Sbjct: 397 EGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFT 456

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
            + +L  L + KR E+A  L+    +    PD  +Y  ++ AY  + N      +  +M 
Sbjct: 457 LNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMI 516

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E KL     TY+ L+ G CR  R++EA   L  +V+ G     +TY  ++ A  + G   
Sbjct: 517 ERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLE 576

Query: 261 QAVKF 265
            A +F
Sbjct: 577 NAFRF 581



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
            S  + G  PDE     Y  ++ A   E + E    L ++        + +T+N +    
Sbjct: 478 HSPPQRGFVPDE---VSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGL 534

Query: 81  NSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
             +  L +    L  L +KG  P ++ Y+ +I   CK   ++ A R  + M E  F    
Sbjct: 535 CRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDV 594

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T + +++ L    ++++A  L E   E     D+  YN L+ + C  G++         
Sbjct: 595 VTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDD 654

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           ME + L  DA TY+ ++     AGR EEA  +L ++ D G+
Sbjct: 655 MEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGK 695



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 26/246 (10%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
             + G  PDE T   Y+ +++A   E DLE      NK          N+F     T N+
Sbjct: 550 LVEKGLVPDETT---YNIIIHAYCKEGDLENAFRFHNKMVE-------NSFKPDVVTCNT 599

Query: 83  LSVLSDLCRTLARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMA 130
           L  ++ LC    +LDK      +            Y+TLI  +CK+  +D AL   D M 
Sbjct: 600 L--MNGLCLH-GKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDME 656

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G    A T++ +LS L+   R EEA  ++  + +        A   L  +   + ++ 
Sbjct: 657 VKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVK 716

Query: 191 ATSGVLKKMEEEKLGADA-RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
              G  +    EK   +A  TY   + G C  G+++EA  +L  M+  G  V  STY  +
Sbjct: 717 EHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITL 776

Query: 250 MGALLR 255
           M  L++
Sbjct: 777 MEGLIK 782


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 8/279 (2%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           Q+V +       G  PD  T   Y+ +VN    E  ++     L       C     ++N
Sbjct: 205 QAVKLLDEMRDKGCAPDIVT---YNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYN 261

Query: 75  FITNTENSLSVLSDLCRTLARLD-KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            +     +     D  + +A +  KG P     ++ LI  LC+   ++ A+ ++D + + 
Sbjct: 262 IVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKY 321

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   ++++++PIL    + K+M+ A   +E+M      PD+ +YN LLTA C  G + A 
Sbjct: 322 GCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAA 381

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L +++++       +Y+ ++ G  +AG+ EEA  LL  MV  G      TY+ +   
Sbjct: 382 VELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSG 441

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
           L R G   +A+K         I+ +T L+ ++   L+GL
Sbjct: 442 LCREGRIEEAIKAFCKVQDMGIRPNTVLYNAI---LLGL 477



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 130/298 (43%), Gaps = 5/298 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R L  +     ++ V     + G  PD  T   Y  L+ A       +    LL++ 
Sbjct: 157 TLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVT---YTILLEATCKRSGYKQAVKLLDEM 213

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKI 119
               C     T+N + N       + D    L  L      P   +Y+ ++  LC  ++ 
Sbjct: 214 RDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERW 273

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           ++A +++  M+  G   + +TF+ ++S L R   +E A  +++ + +   +P+  +YN +
Sbjct: 274 EDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPI 333

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           L A+C +  +      ++ M       D  +Y+ L+   CR G V+ A  LL ++ D G 
Sbjct: 334 LHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGC 393

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           + +  +Y  V+  L + G   +A++ +     + ++ D   + ++ S L    R  EA
Sbjct: 394 TPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEA 451



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P   +Y+TL+  LC+  ++D A+ ++  + + G     I+++ ++  LT+  + EEA  
Sbjct: 359 YPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALE 418

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M    + PD+  Y+ + +  C +G +        K+++  +  +   Y+A++LG C
Sbjct: 419 LLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLC 478

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +      A  L   MV +G     STY  ++  L   G   +A
Sbjct: 479 KRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEA 521



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LC   + D AL V+D M   G     +T+  +L    +    ++A  L
Sbjct: 150 PDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKL 209

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++   +PD+  YN ++   C +G +      LK +       +  +Y+ ++ G C 
Sbjct: 210 LDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCT 269

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           A R E+A  L+  M   G+     T+  ++  L R G    A++ +
Sbjct: 270 AERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEIL 315



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 8/199 (4%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           LI +LC   +  EA RV+            ++++ +++      +++ A  L+  M    
Sbjct: 96  LIKKLCASGRTAEARRVL-----ASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMP--- 147

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD   YN L+   C +G       VL  M       D  TY  L+   C+    ++A 
Sbjct: 148 MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAV 207

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            LL  M D G +    TY  V+  + + G    A++F+        + +T  +  +   L
Sbjct: 208 KLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGL 267

Query: 289 IGLERFNEANFILKEMNKR 307
              ER+ +A  ++ EM+++
Sbjct: 268 CTAERWEDAEKLMAEMSRK 286


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 99/206 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCKL  +  A  VV  M EGGF  + +TF+ ++    +   +++A  L
Sbjct: 90  PNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKL 149

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M    + P++  Y+ L+   C          VL++M+   +  DA TY AL+ G C+
Sbjct: 150 LGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCK 209

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A ++EEA  +LRRM   G +     Y+ ++ A  + G   +A K +     +    D   
Sbjct: 210 ADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVT 269

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + ++   L  L +  EA  IL +M +
Sbjct: 270 YNTVIDGLCKLGKIAEAQVILDQMQE 295



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK +K  EA  V++ M   G    A T+  ++  L +  ++EEA  +
Sbjct: 160 PNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQM 219

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M     +PD+  Y+ ++ A+C  G L      L++M +++   D  TY+ ++ G C+
Sbjct: 220 LRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 279

Query: 221 AGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            G++ EA V+L +M + G  +    TY+ V+  L +     +A K +          D  
Sbjct: 280 LGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVV 339

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            + ++   L    R  EA ++L+ M +
Sbjct: 340 TYTTIIDGLCKCGRLEEAEYLLQGMKR 366



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 10/300 (3%)

Query: 10  KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNT 69
           KFL  + VL       SG  PD  T   Y  L++       +E    +L + A   C   
Sbjct: 177 KFLEAKEVL--EEMKASGVTPDAFT---YSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVD 127
              ++ I +       L +  +TL  + K    P    Y+T+I  LCKL KI EA  ++D
Sbjct: 232 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILD 291

Query: 128 IMAEGGFGLS-AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
            M E G  L   +T+  +++ L +   + EA  L++ M +   +PD+  Y  ++   C  
Sbjct: 292 QMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC 351

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G L     +L+ M+      +  TY  L+ G C+A +V+EA  ++  M + G      TY
Sbjct: 352 GRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTY 411

Query: 247 AHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             ++  L   G   +A + V  M  G  +   D   + ++ + L+  +   EA  +L++M
Sbjct: 412 NTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 84/172 (48%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   + +T+  +++   R K++EEA  L+E M+E    P+L  YN L+ A C    + A 
Sbjct: 52  GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 111

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             V+KKM E     +  T+++LV G C+ G V++A  LL  MV  G      TY+ ++  
Sbjct: 112 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 171

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           L +   + +A + +       +  D   + +L   L   ++  EA  +L+ M
Sbjct: 172 LCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM 223



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 98/207 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI    + KK++EA+++++ M E G   + +T++ ++  L +   +  A  +
Sbjct: 55  PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 114

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E   +P++  +N L+  +C +GN+     +L  M  + +  +  TY AL+ G C+
Sbjct: 115 VKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 174

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           + +  EA  +L  M   G +    TY+ ++  L +     +A + +    G     D  +
Sbjct: 175 SQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 234

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + S+        +  EA   L+EM K+
Sbjct: 235 YSSIIHAFCKSGKLLEAQKTLQEMRKQ 261


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 4/211 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CK K + EA  ++D + + G   + ITF+ ++    +  RM++A+ L
Sbjct: 367 PNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLL 426

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M +  V P+++ YN L+  +C +GN+     + K+ME   L AD  TY+ LV   C+
Sbjct: 427 RSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCK 486

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA--VKFVMVCGGRDIKLDT 278
            G   +A  LL  M + G +  + TY  ++    R G    A  V+ +M   GR   + T
Sbjct: 487 KGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVT 546

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             +  L        +  EAN +L EM ++ L
Sbjct: 547 --YNVLIKGFCNKGKLEEANRLLNEMLEKGL 575



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 1/199 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +D +I  LCK+ K  +A  VV+ M   GF  S IT++ I+    +  +M +A  L++ M 
Sbjct: 232 FDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMV 291

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
             R+ P+   +N L+  +C   N+TA   V ++M+ + L  +  TY++L+ G C  G+++
Sbjct: 292 AKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLD 351

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA  L  +M   G      TY  ++    +     +A + +   G R +  +   F +L 
Sbjct: 352 EALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLI 411

Query: 286 SKLIGLERFNEANFILKEM 304
                  R ++A F+L+ M
Sbjct: 412 DAYGKAGRMDDA-FLLRSM 429



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 4/230 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD--L 89
           +P    Y+ L+N    ++ L+  R +L+   +        TFN + +       + D  L
Sbjct: 366 KPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFL 425

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            R++  LD G  P  S Y+ LI   C+   + EA ++   M   G     +T++ ++  L
Sbjct: 426 LRSMM-LDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDAL 484

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +     +A  L++ M E+ ++P    YN L+  Y  +GN TA   V   ME++   A+ 
Sbjct: 485 CKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANI 544

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
            TY+ L+ G C  G++EEA  LL  M++ G     +TY  +   ++  G+
Sbjct: 545 VTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGF 594



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 96/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++ LI   C+ + +  A +V + M   G   + +T++ +++ L    +++EA GL
Sbjct: 297 PNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGL 356

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M  + + P++  YN L+  +C K  L     +L  + +  L  +  T++ L+    +
Sbjct: 357 QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGK 416

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR+++AF+L   M+D G     STY  ++    R G   +A K      G  +K D   
Sbjct: 417 AGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVT 476

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L   L       +A  +L EM
Sbjct: 477 YNILVDALCKKGETRKAVRLLDEM 500



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 121/295 (41%), Gaps = 33/295 (11%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL-CRTLARLD-- 97
           L++   + ++   +R LL+  A++  ++ +  F+       SLSVL    C     +D  
Sbjct: 113 LLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFH-------SLSVLGSWGCANSIIVDML 165

Query: 98  --------------KGFPRKSAY---------DTLIGRLCKLKKIDEALRVVDIMAEGGF 134
                         +GF R   Y         + ++  L K  +I     V   M     
Sbjct: 166 VWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRI 225

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
           G++ +TF  +++ L +  + ++A  ++E MK    SP +  YN ++  YC  G +     
Sbjct: 226 GVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADA 285

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +LK+M  +++  +  T++ L+ G CR   V  A  +   M   G      TY  ++  L 
Sbjct: 286 LLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLC 345

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             G   +A+       G  +K +   + +L +     +   EA  +L ++ KR L
Sbjct: 346 SNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGL 400


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 1/216 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++KG  P    Y+T+I  LCK +++D A  V   M + G   S +T++ I+  L + + +
Sbjct: 252 VEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAV 311

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A G+ + M +  V PD   YN ++   C    +    GV ++M ++ +  D  TY  +
Sbjct: 312 DRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTII 371

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+A  V+ A  + ++M+D G      TY  ++   L  G + + V+ +      D+
Sbjct: 372 IDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDL 431

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + D   +G L   L    + NEA  +   M ++ +K
Sbjct: 432 EPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIK 467



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 81/162 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++L+  LC + K ++   +   M   G     + F+ +L  L +  R+ EA  L
Sbjct: 573 PNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRL 632

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M  + + PD+ +YN L+  +CF   +     +L  M    L  +  +Y+ L+ G C+
Sbjct: 633 IDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCK 692

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AGR++ A+ L R M+  G +    TY  ++  L R G +++A
Sbjct: 693 AGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEA 734



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 98/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LCK +++D A  V   M E G   + +T++ I+  L + + ++ A G+
Sbjct: 223 PDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGV 282

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  V P    YN ++   C    +    GV ++M +  +  D  TY+ ++ G C+
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCK 342

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A  +++A  + ++M+D G      TY  ++  L +     +A         + +K +   
Sbjct: 343 AQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGT 402

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L    +   ++ E    +KEM+  DL+
Sbjct: 403 YNCLIHGYLSTGQWEEVVQRIKEMSAHDLE 432



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 93  LARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  L++G  P    ++T++  LCK  ++ EA R++D M   G     I+++ ++      
Sbjct: 599 LEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFA 658

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            RM+EA  L++ M    + P++ +YN LL  YC  G +     + ++M  + +     TY
Sbjct: 659 SRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETY 718

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G  R+GR  EA  L   M+   +     TY+ ++    +   + +A K       
Sbjct: 719 NTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCS 778

Query: 272 RDIKLDTELF 281
            D++LD   F
Sbjct: 779 MDLQLDIITF 788



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 89/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK  K +EA  + D M   G   S   +  +L    +   + E   L
Sbjct: 433 PDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDL 492

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M    +SP+   +N ++ AY  +  +     +  KM+++ L  +  TY  L+   C+
Sbjct: 493 LNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCK 552

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV++A +   +M+++G +     +  ++  L  +  + +  +  +    + I+ D   
Sbjct: 553 LGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVF 612

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F ++   L    R  EA  ++  M
Sbjct: 613 FNTVLCNLCKEGRVMEARRLIDSM 636



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ +I       ++D+A     +  E G     +T++ I+  L + + ++ A  +
Sbjct: 191 PDVVSYNIVINGFFNEGQVDKAY---SLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDV 247

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  V P+   YN ++   C    +    GV +KM ++ +     TY+ ++ G C+
Sbjct: 248 FQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCK 307

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           A  V+ A  + ++M+D G    + TY  ++  L +    AQA+
Sbjct: 308 AQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCK----AQAI 346



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 1/210 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG  P    Y+ LI       + +E ++ +  M+         T+  +L  L +  + 
Sbjct: 392 IDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKC 451

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L + M    + P +T Y  +L  Y  KG L+    +L  M    +  + R ++ +
Sbjct: 452 NEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTV 511

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +    +   ++E   +  +M   G S    TY  ++ AL +LG    AV          +
Sbjct: 512 ICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGV 571

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +  +F SL   L  ++++ +   +  EM
Sbjct: 572 TPNNVVFNSLVYGLCTVDKWEKVEELFLEM 601



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/285 (19%), Positives = 105/285 (36%), Gaps = 71/285 (24%)

Query: 97  DKGFPRKSAYDTLIGRLCKL-----------------------------------KKIDE 121
           +K  P    Y  +IG  C++                                   K++ E
Sbjct: 78  NKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGE 137

Query: 122 ALRV-VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK--------------- 165
           A+ V +  M E G  L  ++++ +L  L   +R EEA  L+ +M                
Sbjct: 138 AMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYN 197

Query: 166 --------------------EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
                               E+ VSPD+  YN ++   C    +     V ++M E+ + 
Sbjct: 198 IVINGFFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVK 257

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  TY+ ++ G C+A  V+ A  + ++MVD G      TY  ++  L +     +A   
Sbjct: 258 PNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGV 317

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                 R +K D   + ++   L   +  ++A  + ++M  + +K
Sbjct: 318 FQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVK 362



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 65/157 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+   CK  +ID A  +   M   G      T++ IL+ L R  R  EA  L
Sbjct: 678 PNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAREL 737

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M + R    +  Y+ +L  +C          + + +    L  D  T++ ++ G  +
Sbjct: 738 YVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFK 797

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR E+A  L   +  +G      TY  +   L+  G
Sbjct: 798 GGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEG 834



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 63/157 (40%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  ++   CK    DEA ++   +      L  ITF+ ++  L +G R E+A  L   + 
Sbjct: 753 YSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIP 812

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P +  Y  +      +G+L     +   ME+     ++   +AL+      G + 
Sbjct: 813 ANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIP 872

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            A   L ++ +   S+  ST + ++    R  Y   A
Sbjct: 873 RAGAYLSKLDEKNFSLEASTTSMLISLFSREEYQQHA 909


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 142/314 (45%), Gaps = 39/314 (12%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-----NT 79
           ++G  PDE T   Y++LV+       LE+  +   +   +C  N  N  ++ T     + 
Sbjct: 513 ENGCEPDEWT---YNELVSGFSKWGKLESASFYFQEMV-ECGLN-PNPVSYTTLIDGHSK 567

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           +  + +   L   +  +    P   +Y+ +I  L K  +  EA ++ D MAE G   + I
Sbjct: 568 DGKVDIALSLLERMEEMGCN-PNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVI 626

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  ++  L R  R + A+ +   M++ +  P+L  Y+ L+   C +G       +LK+M
Sbjct: 627 TYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEM 686

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR---- 255
           E + L  D  T+ +L+ G    GR++ AF+LLRRMVD G    Y TY+ ++  L +    
Sbjct: 687 ERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLL 746

Query: 256 --------------LGYYAQAVKFVMVCG--------GRDIKLDTELFGSLGSKLIGLER 293
                            + + V F +V          G +  LDT  + +L S L    R
Sbjct: 747 LEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDT--YSTLVSGLCRKGR 804

Query: 294 FNEANFILKEMNKR 307
           F EA  ++K+M +R
Sbjct: 805 FYEAEQLVKDMKER 818



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 57  LLNKRARDCCFNTANTFNFI----TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGR 112
           +LN+  RD  F  A+    +       E  +  ++D    ++ +  GF   S  +TL+ +
Sbjct: 156 MLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSC-NTLLIQ 214

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           L K + ++ A  +   M   G   S +TF+ ++++L++  ++ EA  ++  + +  +SPD
Sbjct: 215 LAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPD 274

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  L+  +C   NL    GV  +M +E    ++ TY  L+ G C  GRV+EA  +L 
Sbjct: 275 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 334

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            M++ G      TY   + AL  + +  +A++ V     R  + + + + +L S L  L 
Sbjct: 335 EMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 394

Query: 293 RFNEANFILKEMNKRDL 309
           +   A  +  +M K  L
Sbjct: 395 KLEVAIGLYHKMLKEGL 411



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 2/232 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   Y+ L+N    + ++     LL+    + C     T+N + +  +    L      
Sbjct: 483 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 542

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              + + G  P   +Y TLI    K  K+D AL +++ M E G   +  +++ +++ L++
Sbjct: 543 FQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSK 602

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R  EA  + + M E  + P++  Y  L+   C  G       +   ME+ K   +  T
Sbjct: 603 ENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT 662

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           Y +L+ G C+ G+ +EA +LL+ M   G +    T+  ++   + LG    A
Sbjct: 663 YSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHA 714



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 94/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC   +   AL++   M   G   +  T++ I+  L  G  +E+A  L
Sbjct: 413 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 472

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M ++   P +  YN L+  Y  KGN+   + +L  M+E     D  TY+ LV G  +
Sbjct: 473 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 532

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E A    + MV+ G +    +Y  ++    + G    A+  +          + E 
Sbjct: 533 WGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVES 592

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + ++ + L    RF+EA  I  +M ++ L
Sbjct: 593 YNAVINGLSKENRFSEAEKICDKMAEQGL 621



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 35/239 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH-PI--------------- 144
           P    Y TLI  LC   ++DEAL +++ M E G   +  T+  PI               
Sbjct: 308 PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIEL 367

Query: 145 -------------------LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
                              +S L+R  ++E A GL   M +  + P+   YN L+   C 
Sbjct: 368 VARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCV 427

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G  +    +   ME     A+ +TY+ ++ G C  G +E+A VL  +M+  G      T
Sbjct: 428 GGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVT 487

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           Y  ++   L  G    A + + +      + D   +  L S      +   A+F  +EM
Sbjct: 488 YNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 546



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M+E G   +  T+  ++S L R  R  EA  L++ MKE    PD   Y  LL A+C    
Sbjct: 780 MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLE 839

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +     +   +E +        Y AL+   C+AG+VEEA  L   M++   +     +  
Sbjct: 840 VDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTV 899

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
           ++  LL+ G     +K + +   ++   + + +  LG +L
Sbjct: 900 LVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGREL 939



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 112/313 (35%), Gaps = 41/313 (13%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSV 85
           P    Y+ ++N    E        + +K A         T+  + +       T+ +  +
Sbjct: 588 PNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 647

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
             D+ +      K  P    Y +LI  LC+  K DEA  ++  M   G     +TF  ++
Sbjct: 648 FHDMEKR-----KCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLI 702

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL-------------------TAYCFK 186
                  R++ A+ L+  M ++   P+   Y+ LL                     Y F 
Sbjct: 703 DGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFS 762

Query: 187 G-----NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
                 N    S +L +M E        TY  LV G CR GR  EA  L++ M + G   
Sbjct: 763 PHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCP 822

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA---- 297
               Y  ++ A  +      A+K       +  +L   ++ +L   L    +  EA    
Sbjct: 823 DREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALF 882

Query: 298 -NFILKEMNKRDL 309
            N + KE N  ++
Sbjct: 883 DNMLEKEWNADEI 895



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 64/157 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+  LC+  +  EA ++V  M E GF      ++ +L    +   ++ A  +
Sbjct: 787 PTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKI 846

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              ++       L+ Y  L+ A C  G +     +   M E++  AD   +  LV G  +
Sbjct: 847 FHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLK 906

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G ++    LL  M     +    TY  +   L R+G
Sbjct: 907 EGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIG 943


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 7/223 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI   CK K ++EA+ + + M + G   +A+T+  ++    +  RME+A+ L
Sbjct: 296 PNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFAL 355

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M +  + P+++ YN L+   C KG++ A   ++ +M  +KL AD  TY+ L+   C+
Sbjct: 356 YNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCK 415

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA--VKFVMVCGGRDIKLDT 278
            G   +A  LL  M + G +  + TY  +M    R G    A  V+  M   G+   + T
Sbjct: 416 KGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVT 475

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
                 G  L G  R  +AN +L EM +R L      R  YEI
Sbjct: 476 HNVLIKGFCLKG--RLEDANGLLNEMLERGL---VPNRTTYEI 513



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+ LI   CK + +  A+RV   M   G   + +T++ +++ L    +++EA  L
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVAL 285

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P++  +N L+  +C    +     +   ME++ +  +A TY  L+   C+
Sbjct: 286 RDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCK 345

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR+E+AF L   M+D G     STY  ++  L R G
Sbjct: 346 DGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKG 382



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 1/164 (0%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G FP  S Y+ LI  LC+   +  A  +++ M         +T++ ++  L +    
Sbjct: 360 IDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGES 419

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  L++ M E  ++P    YN L+  YC +GNL A   V  +ME +   A+  T++ L
Sbjct: 420 RKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVL 479

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           + G C  GR+E+A  LL  M++ G     +TY  +   ++  G+
Sbjct: 480 IKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGF 523



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 71/134 (52%), Gaps = 3/134 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +++ ++  LCK+ K++ A  V++ M   G   + IT++ ++    +  R+ + +    ++
Sbjct: 157 SFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAIL 216

Query: 165 KEI---RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           KE+    + P+   YN L+  +C   N++    V  +M+ + L  +  TY+ L+ G C  
Sbjct: 217 KEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSD 276

Query: 222 GRVEEAFVLLRRMV 235
           G+V+EA  L  +MV
Sbjct: 277 GKVDEAVALRDQMV 290


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 11/231 (4%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PDE T   Y+ L+N    E +      +  +  R+    +  T+  + N   S+   
Sbjct: 314 GFTPDEVT---YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALIN---SMCKA 367

Query: 87  SDLCRTLARLD----KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            +L R +   D    +G  P +  Y TLI    +   ++EA R+++ M E GF  S +T+
Sbjct: 368 RNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 427

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           +  +      +RMEEA G+++ M E  ++PD+ +Y+ +++ +C KG L     + ++M E
Sbjct: 428 NAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVE 487

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + +  DA TY +L+ G C   R+ EA  L + M+D G      TY  ++ A
Sbjct: 488 KGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINA 538



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 92/210 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI   CK+ +IDEA  ++  M+  G   + I+++ I++ L R   M+EAW 
Sbjct: 246 LPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWE 305

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++E M     +PD   YN LL  YC +GN      +  +M    +     TY AL+   C
Sbjct: 306 ILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMC 365

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +A  +  A     +M   G      TY  ++    R G   +A + +             
Sbjct: 366 KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 425

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + +       LER  EA  +++EM ++ L
Sbjct: 426 TYNAFIHGHCVLERMEEALGVVQEMVEKGL 455



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 4/204 (1%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + +D ++     L  ID+A+  +++    GF    ++++ +L  + R  R        EV
Sbjct: 143 AVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRS-RGSVKLSAEEV 201

Query: 164 MKEI---RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +E+   RVSP++  YN L+  +C  G L    G   +ME      +  TY+ L+   C+
Sbjct: 202 YREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCK 261

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR++EAF LL+ M   G      +Y  ++  L R G   +A + +   G +    D   
Sbjct: 262 MGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 321

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +       F++A  I  EM
Sbjct: 322 YNTLLNGYCKEGNFHQALVIHAEM 345



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 101/209 (48%), Gaps = 6/209 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C + ++ + L     M   G   + +T++ ++    +  R++EA+GL
Sbjct: 212 PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 271

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    + P+L +YN ++   C +G++     +L++M  +    D  TY+ L+ G C+
Sbjct: 272 LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCK 331

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G   +A V+   MV +G S    TY  ++ ++ +     +A++F      R ++ +   
Sbjct: 332 EGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERT 391

Query: 281 FGSLGSKLIGLER---FNEANFILKEMNK 306
           + +L   + G  R    NEA  IL EM +
Sbjct: 392 YTTL---IDGFSRQGLLNEAYRILNEMTE 417



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P +  Y+TL+   CK     +AL +   M   G   S +T+  +++ + + + +  
Sbjct: 313 KGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNR 372

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A    + M+   + P+   Y  L+  +  +G L     +L +M E        TY+A + 
Sbjct: 373 AMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH 432

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C   R+EEA  +++ MV+ G +    +Y+ ++    R G   +A +       + +  
Sbjct: 433 GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 492

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDY 318
           D   + SL   L  + R  EA  + +EM    L MG    ++
Sbjct: 493 DAVTYSSLIQGLCEMRRLTEACDLSQEM----LDMGLPPDEF 530



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 16/178 (8%)

Query: 96  LDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G P     Y TLI   C    +++AL + D M   GF   A+T+  +++ L +  R 
Sbjct: 521 LDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQART 580

Query: 155 EEAWGLM-EVMKEIRVSPDLT--------------AYNYLLTAYCFKGNLTATSGVLKKM 199
            EA  L+ +++ E  V  D+T              +   L+  +C KG +     V + M
Sbjct: 581 REAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESM 640

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            E         Y+ ++ G CR G + +AF L + M+  G      T   ++ AL + G
Sbjct: 641 VERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 698



 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 76/202 (37%), Gaps = 25/202 (12%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PDE T   Y  L+NA   E DL    +L ++         A T++ + N  N  +  
Sbjct: 524 GLPPDEFT---YTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQART 580

Query: 87  SDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +  R L +L  ++  P    YDTLI     +    E   VV ++   GF +  +     
Sbjct: 581 REAKRLLFKLIYEESVPSDVTYDTLIENCSNI----EFKSVVALIK--GFCMKGL----- 629

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
                    M EA  + E M E    P    YN ++  +C  GNL     + K+M     
Sbjct: 630 ---------MHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGF 680

Query: 205 GADARTYDALVLGACRAGRVEE 226
                T   L+    + G  EE
Sbjct: 681 VPHTVTVITLIKALFKEGMNEE 702


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 28/251 (11%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + ++ L+ +   +SG  P+  T   Y  +++    +  ++T   L  +   + C     T
Sbjct: 177 VHRAYLLLKEMKESGLAPNVVT---YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVT 233

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKID 120
           +N         ++LS LCR    +D+ +            P K +YDTL+  LCK  KID
Sbjct: 234 YN---------TLLSGLCRN-GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKID 283

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
            AL+V +  + G      + +  +++ L +  R++EA  L E M+E    PD+  +  L+
Sbjct: 284 MALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALM 343

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG-- 238
              C    L     VL+ ME+     +  TY +L+ G C+ G+V +A  + +RM+  G  
Sbjct: 344 DGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 403

Query: 239 -QSVLYSTYAH 248
              V Y++  H
Sbjct: 404 PNVVTYNSLIH 414



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 95/207 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY TLI  LCK  ++DEA ++ + M E       +TF  ++  L +G R++EA  +
Sbjct: 299 PDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQV 358

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M++   +P++  Y+ L+   C  G +     V K+M    +  +  TY++L+ G C 
Sbjct: 359 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCM 418

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V+ A +L+  M   G      TY  ++  L + G   +A +       +    D   
Sbjct: 419 TNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT 478

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           +  L      LER + A  +  +M K+
Sbjct: 479 YSCLIGGFCKLERIDMARTLFDDMLKQ 505



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I   C+  K+D A ++   M E G   + +T++ +LS L R   M+EA+ L
Sbjct: 194 PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 253

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+E  + PD  +Y+ L+   C  G +     V +         D   Y  L+ G C+
Sbjct: 254 LDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCK 313

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR++EA  L  +M ++       T+  +M  L +     +A + +     R+   +   
Sbjct: 314 AGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVIT 373

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + SL   L    +  +A  + K M  R ++
Sbjct: 374 YSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 403



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 2/237 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ L++       +++   L+ +     C     T+N + +         +  R
Sbjct: 403 EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANR 462

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               +   F  P    Y  LIG  CKL++ID A  + D M +       +TF  ++    
Sbjct: 463 LFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYC 522

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               +++A  L+E M     SPD+  Y  L+  +C  G +     VLK+M +     +  
Sbjct: 523 NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVV 582

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           TY AL+   CRAG+   A+ LL  MV +G      TY  ++G     G   +A K +
Sbjct: 583 TYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKIL 639



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 25/304 (8%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P++        K G  P+E T   Y+ L+N       +    YLL K  ++    +   
Sbjct: 142 LPEATTYFAKMKKKGTVPNEWT---YNVLINGFCKVHKVHRA-YLLLKEMKE----SGLA 193

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKID 120
            N +T +    +V+   CR   ++D  +            P    Y+TL+  LC+   +D
Sbjct: 194 PNVVTYS----TVIHGFCRQ-TKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMD 248

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA  ++D M E G      ++  +++ L +  +++ A  + E        PD+ AY+ L+
Sbjct: 249 EAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 308

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
              C  G L     + +KM E     D  T+ AL+ G C+  R++EA  +L  M D   +
Sbjct: 309 AGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCT 368

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
               TY+ ++  L + G    A +       R I+ +   + SL          + A  +
Sbjct: 369 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 428

Query: 301 LKEM 304
           ++EM
Sbjct: 429 MEEM 432



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 92/207 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK  +  EA R+   M         IT+  ++    + +R++ A  
Sbjct: 438 LPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMART 497

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + M +  V PD+  ++ L+  YC  G +     +L++M       D  TY +LV G C
Sbjct: 498 LFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC 557

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GR+ EA  +L+RM   G      TY  ++ A  R G    A + +    G  ++ +  
Sbjct: 558 KVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVI 617

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            + SL     G     EA  IL+ + +
Sbjct: 618 TYRSLIGGFCGTGDLEEARKILERLER 644



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 94/199 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  +I  LCK  ++ EA      M + G   +  T++ +++   +  ++  A+ L++ MK
Sbjct: 129 WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK 188

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  ++P++  Y+ ++  +C +  +     + ++M E     +  TY+ L+ G CR G ++
Sbjct: 189 ESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMD 248

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA+ LL  M + G      +Y  +M  L + G    A+K        D   D   + +L 
Sbjct: 249 EAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 308

Query: 286 SKLIGLERFNEANFILKEM 304
           + L    R +EA  + ++M
Sbjct: 309 AGLCKAGRLDEACKLFEKM 327



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 3/166 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ +I  LCK +   +AL   D         + IT+  ++  L +  R+ EA   
Sbjct: 92  PDAAIYNFVIHALCKARNTAKAL---DYFRSMECEKNVITWTIMIDGLCKANRLPEATTY 148

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK+    P+   YN L+  +C    +     +LK+M+E  L  +  TY  ++ G CR
Sbjct: 149 FAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR 208

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             +V+ A+ L R+MV++G      TY  ++  L R G   +A + +
Sbjct: 209 QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELL 254



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LCK  ++ +A  V   M   G   + +T++ ++        ++ A  L
Sbjct: 369 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 428

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME M      PD+  YN L+   C  G     + +   M+ +    D  TY  L+ G C+
Sbjct: 429 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 488

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
             R++ A  L   M+   Q+VL    T++ ++      G    A + +      D   D 
Sbjct: 489 LERIDMARTLFDDMLK--QAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDV 546

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKR 307
             + SL      + R  EA  +LK M KR
Sbjct: 547 YTYTSLVDGFCKVGRMVEARRVLKRMAKR 575



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 36/239 (15%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L   L + ++IDE   ++      G   +  T+  ++  L +   +++A  L+E M+
Sbjct: 27  YNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMR 86

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK---------------------- 203
           E    PD   YN+++ A C   N        + ME EK                      
Sbjct: 87  ESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEAT 146

Query: 204 ----------LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
                        +  TY+ L+ G C+  +V  A++LL+ M + G +    TY+ V+   
Sbjct: 147 TYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGF 206

Query: 254 LRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            R      A K    MV  G    L T  + +L S L      +EA  +L EM +R L+
Sbjct: 207 CRQTKVDTAYKLFRQMVENGCMPNLVT--YNTLLSGLCRNGLMDEAYELLDEMRERGLQ 263



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 37/199 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+   CK+ ++ EA RV+  MA+ G   + +T+  ++    R  +   A+ L
Sbjct: 544 PDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRL 603

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME-EEKLGAD-----------A 208
           +E M    V P++  Y  L+  +C  G+L     +L+++E +E   AD            
Sbjct: 604 LEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLC 663

Query: 209 RT------------------------YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
           RT                        Y AL+ G C+   + +A  +L  M    +S   +
Sbjct: 664 RTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNA 723

Query: 245 -TYAHVMGALLRLGYYAQA 262
             Y  V+  L R G + +A
Sbjct: 724 EAYEAVIQELAREGRHEEA 742



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 81/191 (42%), Gaps = 4/191 (2%)

Query: 120 DEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           D ALR     + + GF  +  T++ +   L R +R++E   +++      ++P++  Y  
Sbjct: 5   DAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAV 64

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           ++   C  G+L     +L++M E     DA  Y+ ++   C+A    +A    R M  + 
Sbjct: 65  VIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEK 124

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
             +   T+  ++  L +     +A  +      +    +   +  L +    + + + A 
Sbjct: 125 NVI---TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 181

Query: 299 FILKEMNKRDL 309
            +LKEM +  L
Sbjct: 182 LLLKEMKESGL 192



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y +LIG  C    ++EA ++++ +  +         +  ++  L R  RM  A  
Sbjct: 614 PNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALE 673

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME-EEKLGADARTYDALVLGA 218
           L+E +K+    P    Y  L+   C    L     VL++M    K   +A  Y+A++   
Sbjct: 674 LLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQEL 733

Query: 219 CRAGRVEEAFVL 230
            R GR EEA  L
Sbjct: 734 AREGRHEEANAL 745


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 7/237 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN--TFNFITNTENSLSVLSDLC 90
           P    Y  L+N       ++  R L+ +  R  C    N  T+N   +     S+ ++ C
Sbjct: 284 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 343

Query: 91  RTLARLDKGF----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
             +  L  G     P    + TLI  LCK  +IDEA  V D M  GG+  + IT++ +++
Sbjct: 344 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 403

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L +  +ME A  ++E M +  V+PD+  Y+ L+ A+C    +     +L  M       
Sbjct: 404 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 463

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRM-VDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +  T+++++ G C++ R  EAF +   M +  G      TY  ++  L R G   QA
Sbjct: 464 NVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQA 520



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 7/237 (2%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN--TFNFITNTENSLSVLSDLC 90
            P    Y  L+N       ++  R L+ +  R  C    N  T+N   +     S++++ C
Sbjct: 778  PNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEAC 837

Query: 91   RTLARLDKGF----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
              +  L  G     P    + TLI  LCK  + DEA  V D M  GG+  + +T++ +++
Sbjct: 838  ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMN 897

Query: 147  VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
             L +  +ME A  ++E M +  V+PD+  Y+ L+ A+C   ++     +L  M       
Sbjct: 898  GLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTP 957

Query: 207  DARTYDALVLGACRAGRVEEAFVLLRRM-VDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            +  T+++++ G C++ +  EAF +   M +  G +    TY  ++  L R G+  QA
Sbjct: 958  NVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQA 1014



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 4/208 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKRMEEAW 158
           P    Y  LI  LCK+ +IDEA  ++  M      +  + IT++  L  L +     EA 
Sbjct: 284 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 343

Query: 159 GLMEVMKE--IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
            LM  +++  +RVSPD   ++ L+   C  G +     V   M       +  TY+ALV 
Sbjct: 344 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 403

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+A ++E A  ++  MVD G +    TY+ ++ A  +     +A++ +     R    
Sbjct: 404 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 463

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           +   F S+   L   +R  EA  +  +M
Sbjct: 464 NVVTFNSIIDGLCKSDRSGEAFQMFDDM 491



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 120/306 (39%), Gaps = 46/306 (15%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYL---LNKRARDCCFNTAN 71
           Q++ V       G  PD  T   Y+ L+++     DLE  R L   ++ R   CC     
Sbjct: 725 QAITVLEEMVGKGHHPDVVT---YNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCV---- 777

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
                                        P    Y  LI  LCK+ +IDEA  ++  M  
Sbjct: 778 -----------------------------PNVVTYSVLINGLCKVGRIDEARELIQEMMR 808

Query: 132 GGFGL--SAITFHPILSVLTRGKRMEEAWGLMEVMKE--IRVSPDLTAYNYLLTAYCFKG 187
               +  + IT++  L  L +   M EA  LM  +++  +RVSPD   ++ L+   C  G
Sbjct: 809 KSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCG 868

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
                  V   M       +  TY+ L+ G C+  ++E A  ++  MVD G +    TY+
Sbjct: 869 QTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYS 928

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++ A  +  +  +A++ +     R    +   F S+   L   ++  EA  +  +M   
Sbjct: 929 VLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMT-- 986

Query: 308 DLKMGF 313
            LK G 
Sbjct: 987 -LKHGL 991



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 90/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A++  I  L KL  +  AL+V + M E       +TF+ +++   +    E+A  L
Sbjct: 530 PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASAL 589

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M    + PD+  +  L+   C  G + A   +L  M    +  +  TY+ALV G C+
Sbjct: 590 FEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCK 649

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+EEA   L  MV  G      TY  ++ AL R      A++ V          DT  
Sbjct: 650 SGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVT 709

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L   L    +  +A  +L+EM
Sbjct: 710 YNILVDGLWKSGQTEQAITVLEEM 733



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 5/232 (2%)

Query: 81  NSLSVLSDLCRTLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N LS L D+ R L   ++       P K  ++ LI   CK    ++A  + + M      
Sbjct: 540 NGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQ 599

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
              +TF  ++  L +  ++E A  ++++M  + V P++  YN L+   C  G +      
Sbjct: 600 PDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQF 659

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L++M       D+ TY +LV   CRA R ++A  L+  +   G      TY  ++  L +
Sbjct: 660 LEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWK 719

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            G   QA+  +    G+    D   + +L   L       EA  +  +M+ R
Sbjct: 720 SGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSR 771



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 33/242 (13%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG  P    Y  L+   CK  ++DEAL ++  MA  G   + +TF+ I+  L +  R 
Sbjct: 422 VDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRS 481

Query: 155 EEAW--------------------------------GLMEVMKEIRVSPDLTAYNYLLTA 182
            EA+                                G  E + +    PD  A+N  +  
Sbjct: 482 GEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCING 541

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
               G+++    V  +M E +L  D  T++ L+ GAC+AG  E+A  L   MV       
Sbjct: 542 LSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPD 601

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
             T+  ++  L + G    A   + + G   +  +   + +L   L    R  EA   L+
Sbjct: 602 VMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLE 661

Query: 303 EM 304
           EM
Sbjct: 662 EM 663



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 120/276 (43%), Gaps = 15/276 (5%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLD 97
           L  A    R LE  R    + ARD    T  T+N I N     N L    +L   L  ++
Sbjct: 190 LCRAGETARALEIFR---GEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL--VE 244

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +G  P    Y+TLI  LCK   ++EA R+   M+      + +T+  +++ L +  R++E
Sbjct: 245 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDE 304

Query: 157 AWGLMEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE---KLGADARTY 211
           A  L++ M  K   V P++  YN  L   C K ++TA +  L +   +   ++  D  T+
Sbjct: 305 ARELIQEMTRKSCDVLPNIITYNSFLDGLC-KQSMTAEACELMRSLRDGSLRVSPDTVTF 363

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
             L+ G C+ G+++EA  +   M+  G      TY  ++  L +     +A   +     
Sbjct: 364 STLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVD 423

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           + +  D   +  L        R +EA  +L  M  R
Sbjct: 424 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASR 459



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 114/276 (41%), Gaps = 14/276 (5%)

Query: 37  YYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL 96
           Y + LV +    + ++  R  L  R R       N F + T    +     D+ RTL   
Sbjct: 117 YLNLLVKSGSPAKAIDLFRSRLPPRCR------PNHFTYSTLLRATYKAGGDVERTLGFF 170

Query: 97  DKGFPRK---SAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGK 152
            +        + Y+ ++  LC+  +   AL +    MA  G   + +T++ I++ L +  
Sbjct: 171 RRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSN 230

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
            +     L E + E    PD+  YN L+ + C  G+L     +   M       +  TY 
Sbjct: 231 ELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYS 290

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFV--MV 268
            L+ G C+ GR++EA  L++ M      VL +  TY   +  L +    A+A + +  + 
Sbjct: 291 VLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR 350

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            G   +  DT  F +L   L    + +EA  +  +M
Sbjct: 351 DGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDM 386



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 36/195 (18%)

Query: 96   LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
            +DKG  P    Y  L+   CK   +DEAL ++  MA  G   + +TF+ I+  L +  + 
Sbjct: 916  VDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQS 975

Query: 155  EEA-------------------------------W-GLMEVMKEIRVSPDLTAYNYLLTA 182
             EA                               W G  EV+ +    PD  A+N  +  
Sbjct: 976  GEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCING 1035

Query: 183  YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
                G++   S  L +M E +L  D  T++ L+ GAC+AG  E+A  L   MV       
Sbjct: 1036 LSKLGDV---SRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPD 1092

Query: 243  YSTYAHVMGALLRLG 257
              T+  ++  L + G
Sbjct: 1093 VMTFGALIDGLCKAG 1107



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 14/238 (5%)

Query: 78  NTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG---G 133
            TE +++VL ++      + KG  P    Y+TLI  LCK   ++EA R+   M+      
Sbjct: 722 QTEQAITVLEEM------VGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRC 775

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTA 191
              + +T+  +++ L +  R++EA  L++ M  K   V P++  YN  L   C +  +  
Sbjct: 776 CVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAE 835

Query: 192 TSGVLKKMEEEKL--GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
              +++ + +  L    D  T+  L+ G C+ G+ +EA  +   M+  G      TY  +
Sbjct: 836 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVL 895

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           M  L +     +A   +     + +  D   +  L          +EA  +L  M  R
Sbjct: 896 MNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASR 953



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 23/219 (10%)

Query: 21   RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-- 78
             S    G  PD  T   Y  LV+A      ++    LL+  A   C     TFN I +  
Sbjct: 913  ESMVDKGVTPDVIT---YSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGL 969

Query: 79   -----TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
                 +  +  +  D+      L  G  P K  Y TLI  L +     +A  ++D M + 
Sbjct: 970  CKSDQSGEAFQMFDDM-----TLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDP 1024

Query: 133  GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
                    F+  ++ L++   +  A   +  M E+ + PD   +N L+   C  GN    
Sbjct: 1025 ----DTYAFNCCINGLSKLGDVSRA---LHRMLELELVPDKVTFNILIAGACKAGNFEQA 1077

Query: 193  SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
            S + ++M  + L  D  T+ AL+ G C+AG+VE  + ++
Sbjct: 1078 SALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116


>gi|357148528|ref|XP_003574800.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Brachypodium distachyon]
          Length = 464

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 6/236 (2%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDLC 90
           + A +  ++++ GH R  E    + N+     C  T   +N + +   +  + +    L 
Sbjct: 151 SPATFSAVISSYGHSRLPEQAVEVFNRLPHFGCPQTTEVYNALLDALCSNGNFAGAYKLL 210

Query: 91  RTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           R +AR  KG  P ++ + TL+   C   K+ EA   +D MA  GF         ++  L 
Sbjct: 211 RRMAR--KGVAPDRATFSTLVDAWCASGKLREAQAFLDDMASRGFRPPVRGRDLLVDGLV 268

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R  R+EEA        +  V PD+  +N L  A C  G++    G+L       L  D  
Sbjct: 269 RAGRLEEAKAFAVRFTKEGVLPDVATFNSLAQALCDAGDVKFAVGLLADASSRGLCPDIS 328

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           TY  ++    +AG++EEAF L    V+DG     S YA ++ AL + G +  A  F
Sbjct: 329 TYKVMLPAVAKAGQIEEAFRLFYAAVEDGHRPFPSLYAAIVKALCKAGRFGDAFAF 384



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 2/243 (0%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-G 99
           ++ AA     L   R+L   RA+     +A  F+ +        + + L    + +   G
Sbjct: 88  VIKAAAPAEPLHAARFLAWLRAKPNFSPSAEHFDALLLPLARARLFTHLWTQASDMRALG 147

Query: 100 FPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
            P   A +  +I      +  ++A+ V + +   G   +   ++ +L  L        A+
Sbjct: 148 LPLSPATFSAVISSYGHSRLPEQAVEVFNRLPHFGCPQTTEVYNALLDALCSNGNFAGAY 207

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  M    V+PD   ++ L+ A+C  G L      L  M         R  D LV G 
Sbjct: 208 KLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMASRGFRPPVRGRDLLVDGL 267

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            RAGR+EEA     R   +G     +T+  +  AL   G    AV  +     R +  D 
Sbjct: 268 VRAGRLEEAKAFAVRFTKEGVLPDVATFNSLAQALCDAGDVKFAVGLLADASSRGLCPDI 327

Query: 279 ELF 281
             +
Sbjct: 328 STY 330


>gi|356523086|ref|XP_003530173.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g17670-like [Glycine max]
          Length = 456

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 119/273 (43%), Gaps = 11/273 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +A  D  V +      L+    L+ + A   C     TFNF+       S ++ +   
Sbjct: 148 PDTATADVAVRSLCSAGRLDHAVELIKEFASKHCPPDTYTFNFLVKHLCKSSTITTVYAF 207

Query: 93  LARLDKGF---PRKSAYDTLIGRLCKLKKID--EALRVVDIMAEGGFGLSAITFHPILS- 146
           +  + + F   P    Y  LI  +C  K ++  EA+R+V ++ E GF L    ++ I+  
Sbjct: 208 IDEMREKFDVKPDLVTYTILIDNVCNGKNLNLREAMRLVSVLHEEGFKLDCFVYNTIMKG 267

Query: 147 --VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
             VL+RG    EA  +   MKE  V PDL  YN L+      G +T    +L+ M E+  
Sbjct: 268 YCVLSRG---SEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMAEKGY 324

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY +L+ G CR G    A  LL  M   G S    TY  ++  L +     +AVK
Sbjct: 325 FPDEVTYTSLMNGLCRKGDALGALALLGEMEAKGCSPNACTYNTLLHGLCKARLVEKAVK 384

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           F  V     +KLDT  +G+    L    R  EA
Sbjct: 385 FYQVIRAGGLKLDTASYGTFVRALCRDGRIAEA 417



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 35/166 (21%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T++   C L +  EA+ V + M E G     +T++ ++  L++  R+ EA  L+ VM 
Sbjct: 261 YNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMA 320

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA---- 221
           E    PD   Y  L+   C KG+      +L +ME +    +A TY+ L+ G C+A    
Sbjct: 321 EKGYFPDEVTYTSLMNGLCRKGDALGALALLGEMEAKGCSPNACTYNTLLHGLCKARLVE 380

Query: 222 -------------------------------GRVEEAFVLLRRMVD 236
                                          GR+ EA+ +    V+
Sbjct: 381 KAVKFYQVIRAGGLKLDTASYGTFVRALCRDGRIAEAYEVFDYAVE 426



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  LCK + +++A++   ++  GG  L   ++   +  L R  R+ EA+ +
Sbjct: 361 PNACTYNTLLHGLCKARLVEKAVKFYQVIRAGGLKLDTASYGTFVRALCRDGRIAEAYEV 420

Query: 161 MEVMKEIRVSPDLTAYNYL 179
            +   E +   D+ AY+ L
Sbjct: 421 FDYAVESKSLTDVAAYSTL 439



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 3/147 (2%)

Query: 69  TANTFNFITNTENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVD 127
           T NT  F  +    ++    L R +A  +KG FP +  Y +L+  LC+      AL ++ 
Sbjct: 295 TYNTLIFGLSKSGRVTEARKLLRVMA--EKGYFPDEVTYTSLMNGLCRKGDALGALALLG 352

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M   G   +A T++ +L  L + + +E+A    +V++   +  D  +Y   + A C  G
Sbjct: 353 EMEAKGCSPNACTYNTLLHGLCKARLVEKAVKFYQVIRAGGLKLDTASYGTFVRALCRDG 412

Query: 188 NLTATSGVLKKMEEEKLGADARTYDAL 214
            +     V     E K   D   Y  L
Sbjct: 413 RIAEAYEVFDYAVESKSLTDVAAYSTL 439



 Score = 37.7 bits (86), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 43/235 (18%), Positives = 90/235 (38%), Gaps = 7/235 (2%)

Query: 77  TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEAL-RVVDIMAEGGFG 135
           T   +S+   + + +TL       P +S +  L+        +   + + +++M   G  
Sbjct: 91  TTPSDSIKFFNHITKTLPSFS---PDRSTFHILLSHASNNSNLLSPIHQXLNLMLAAGIT 147

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
               T    +  L    R++ A  L++        PD   +N+L+   C    +T     
Sbjct: 148 PDTATADVAVRSLCSAGRLDHAVELIKEFASKHCPPDTYTFNFLVKHLCKSSTITTVYAF 207

Query: 196 LKKMEEE-KLGADARTYDALVLGACRAGRVE--EAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + +M E+  +  D  TY  L+   C    +   EA  L+  + ++G  +    Y  +M  
Sbjct: 208 IDEMREKFDVKPDLVTYTILIDNVCNGKNLNLREAMRLVSVLHEEGFKLDCFVYNTIMKG 267

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
              L   ++A++         ++ D   + +L   L    R  EA  +L+ M ++
Sbjct: 268 YCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMAEK 322


>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 100/197 (50%), Gaps = 1/197 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKGF P + +Y+TLI   CK+  +DEA+++   M + G+  + ++ + ++  L    R 
Sbjct: 359 IDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRT 418

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA+     M    +  D+  YN L+  +C +G +  ++ +LK+++ + L     +Y  L
Sbjct: 419 DEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHL 478

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   C+ G V+EA  +   M + G   +  T  H++  L   GY  + +++++     ++
Sbjct: 479 IQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNL 538

Query: 275 KLDTELFGSLGSKLIGL 291
           K   E F  L   LI +
Sbjct: 539 KPQKETFYKLIQSLIQI 555



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 105/238 (44%), Gaps = 14/238 (5%)

Query: 33  PTSAYYDDLVNA----AGHERDLETVRYLLNKRARDCCFNTANTFN-FITN--TENSLSV 85
           P +  ++ L++       H R LE V  ++ K      F      N F  N  T  +  V
Sbjct: 260 PCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEV 319

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +      A  D+G+ P    Y TLI   CK+ ++++A ++   M + GF  +  +++ +
Sbjct: 320 FN------ALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTL 373

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++EA  L + M +        + N L+   C  G         ++M  + +
Sbjct: 374 IYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNI 433

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             D  TY+ L+ G CR G+V ++  LL+ +   G     S+YAH++  L +LG   +A
Sbjct: 434 VCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEA 491



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 21/263 (7%)

Query: 50  DLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDT 108
           D+ETV YL+     D                N +S   ++ R    L+ G  P   A++ 
Sbjct: 226 DIETVGYLIQAFCND----------------NKVSRAYEILR--QSLEDGLTPCNDAFNK 267

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           LI   CK K     L +V  M          T+  I++   +     +A+ +   +K+  
Sbjct: 268 LISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRG 327

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
            +PD+  Y  L+  +C  G L   S +  +M ++    +  +Y+ L+ G C+ G ++EA 
Sbjct: 328 YAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAM 387

Query: 229 VLLRRMVDDG-QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
            L ++M+D G +    S    ++G  L  G   +A  F      ++I  D   + +L   
Sbjct: 388 KLYKKMLDSGYKETTLSCNTLILGLCLH-GRTDEAYDFFREMPCKNIVCDVITYNTLIQG 446

Query: 288 LIGLERFNEANFILKEMNKRDLK 310
                +  ++  +LKE+  + L+
Sbjct: 447 FCREGKVLQSTDLLKELQAKGLQ 469



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/206 (18%), Positives = 83/206 (40%), Gaps = 2/206 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  ++ +  I  +C+   ++EA+   D++ E G+     T++       +  R +  W L
Sbjct: 153 PEPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKL 212

Query: 161 MEVMKEIRVSP--DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            E M E  V    D+    YL+ A+C    ++    +L++  E+ L      ++ L+ G 
Sbjct: 213 YEGMMETGVQKDVDIETVGYLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGF 272

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+         L+  M+   ++    TY  ++    +     QA +       R    D 
Sbjct: 273 CKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDM 332

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
            ++ +L      + +  +A+ +  EM
Sbjct: 333 VMYTTLIHGFCKMGQLEDASKLWFEM 358


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 104/209 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I   CK+K +DEAL + + M   G     +T++ ++  L +  R+  AW L
Sbjct: 346 PNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWEL 405

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +     ++  YN L+ A C   ++     ++KK++++ +  D  T++ L+ G C+
Sbjct: 406 VDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCK 465

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR++ A  + + ++  G SV   TY  ++  L + G + +A   +       I  D   
Sbjct: 466 VGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVT 525

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + +L   L   +   +A  +L+EM  RD+
Sbjct: 526 YETLIQALFHKDENEKAEKLLREMIARDV 554



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 95/204 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  LCK   +  A  ++ +M + G   + +T+  ++       ++ +A  +
Sbjct: 276 PDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHV 335

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  + ++  +P+  +Y  ++  +C    +     +   M+ + +  D  TY++L+ G C+
Sbjct: 336 LNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCK 395

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+  A+ L+  M D+GQ     TY  ++ AL +  +  QA+  V     + I+ D   
Sbjct: 396 SGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYT 455

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F  L   L  + R   A  + +++
Sbjct: 456 FNILIYGLCKVGRLKNAQDVFQDL 479



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 2/237 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN + N    ++ ++     +A++ K G+ P    ++TLI  LC   K+ EAL   D +
Sbjct: 105 TFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHV 164

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF L   ++  +++ L +      A  ++  +    V  ++  YN ++ + C    +
Sbjct: 165 LALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLV 224

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  +M  +K+  D  T+ AL+ G C  G++EEAF L R MV    +  Y T+  +
Sbjct: 225 IDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNIL 284

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           + AL + G    A   ++V     +  +   + SL      + + N+A  +L  +++
Sbjct: 285 VDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQ 341



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 89/200 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T+I  LCK K + +A  +   M         +TF  ++       ++EEA+GL   M 
Sbjct: 211 YNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMV 270

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++PD   +N L+ A C +GNL     +L  M +E +  +  TY +L+ G C   +V 
Sbjct: 271 LKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVN 330

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  +L  +   G +    +Y  ++    ++    +A+        + I  D   + SL 
Sbjct: 331 KAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLI 390

Query: 286 SKLIGLERFNEANFILKEMN 305
             L    R + A  ++ EM+
Sbjct: 391 DGLCKSGRISYAWELVDEMH 410



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 2/154 (1%)

Query: 137 SAITFHPILSVLTR--GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
           S I F+ IL  L +        A  L   ++   ++PD+  +N L+  YC    +     
Sbjct: 65  SIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFS 124

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           ++ K+ +     D  T++ L+ G C  G+V+EA      ++  G  +   +Y  ++  L 
Sbjct: 125 MMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLC 184

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
           ++G    A++ +    G+ +K++  ++ ++   L
Sbjct: 185 KIGETRTALQMLRKIDGKLVKINVVMYNTIIDSL 218


>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 100/197 (50%), Gaps = 1/197 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKGF P + +Y+TLI   CK+  +DEA+++   M + G+  + ++ + ++  L    R 
Sbjct: 395 IDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRT 454

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA+     M    +  D+  YN L+  +C +G +  ++ +LK+++ + L     +Y  L
Sbjct: 455 DEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHL 514

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   C+ G V+EA  +   M + G   +  T  H++  L   GY  + +++++     ++
Sbjct: 515 IQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNL 574

Query: 275 KLDTELFGSLGSKLIGL 291
           K   E F  L   LI +
Sbjct: 575 KPQKETFYKLIQSLIQI 591



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 105/238 (44%), Gaps = 14/238 (5%)

Query: 33  PTSAYYDDLVNA----AGHERDLETVRYLLNKRARDCCFNTANTFN-FITN--TENSLSV 85
           P +  ++ L++       H R LE V  ++ K      F      N F  N  T  +  V
Sbjct: 296 PCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEV 355

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +      A  D+G+ P    Y TLI   CK+ ++++A ++   M + GF  +  +++ +
Sbjct: 356 FN------ALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTL 409

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++EA  L + M +        + N L+   C  G         ++M  + +
Sbjct: 410 IYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNI 469

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             D  TY+ L+ G CR G+V ++  LL+ +   G     S+YAH++  L +LG   +A
Sbjct: 470 VCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEA 527



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 21/263 (7%)

Query: 50  DLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDT 108
           D+ETV YL+     D                N +S   ++ R    L+ G  P   A++ 
Sbjct: 262 DIETVGYLIQAFCND----------------NKVSRAYEILR--QSLEDGLTPCNDAFNK 303

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           LI   CK K     L +V  M          T+  I++   +     +A+ +   +K+  
Sbjct: 304 LISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRG 363

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
            +PD+  Y  L+  +C  G L   S +  +M ++    +  +Y+ L+ G C+ G ++EA 
Sbjct: 364 YAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAM 423

Query: 229 VLLRRMVDDG-QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
            L ++M+D G +    S    ++G  L  G   +A  F      ++I  D   + +L   
Sbjct: 424 KLYKKMLDSGYKETTLSCNTLILGLCLH-GRTDEAYDFFREMPCKNIVCDVITYNTLIQG 482

Query: 288 LIGLERFNEANFILKEMNKRDLK 310
                +  ++  +LKE+  + L+
Sbjct: 483 FCREGKVLQSTDLLKELQAKGLQ 505



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/206 (18%), Positives = 83/206 (40%), Gaps = 2/206 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  ++ +  I  +C+   ++EA+   D++ E G+     T++       +  R +  W L
Sbjct: 189 PEPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKL 248

Query: 161 MEVMKEIRVSP--DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            E M E  V    D+    YL+ A+C    ++    +L++  E+ L      ++ L+ G 
Sbjct: 249 YEGMMETGVQKDVDIETVGYLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGF 308

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+         L+  M+   ++    TY  ++    +     QA +       R    D 
Sbjct: 309 CKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDM 368

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
            ++ +L      + +  +A+ +  EM
Sbjct: 369 VMYTTLIHGFCKMGQLEDASKLWFEM 394


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 23/244 (9%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           +SG  PD   +  Y+ L+N    +  LE V  LL +          +TF++ T       
Sbjct: 190 ESGLTPD---TVAYNALLNGLCKQNQLEEVSKLLEEMVEA--GREPDTFSYNT------- 237

Query: 85  VLSDLC---------RTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           V++ LC         + L ++   K  P    Y++L+   CK+ K+DEA R+++ M    
Sbjct: 238 VVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRR 297

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
              + IT+  ++   +R  R+ +A+ +ME M +  +SPDL  YN LL   C  G L    
Sbjct: 298 CAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAH 357

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            +L+ M E+    D  TY  LV G C+ G+V++A +LL  M++ G      T+  ++   
Sbjct: 358 ELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGF 417

Query: 254 LRLG 257
            + G
Sbjct: 418 CKAG 421



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 128/288 (44%), Gaps = 22/288 (7%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT+  Y  L++     + ++    LL++  +  C   A  +N          +++ LC+ 
Sbjct: 90  PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYN---------CLIAGLCK- 139

Query: 93  LARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           + ++D               P    Y +LI   C+   +DEA ++++ M E G     + 
Sbjct: 140 MGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVA 199

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ +L+ L +  ++EE   L+E M E    PD  +YN ++   C  G       +L+KM 
Sbjct: 200 YNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMI 259

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E+K G D  TY++L+ G C+  +++EA  LL  MV    +    TY  ++G   R    A
Sbjct: 260 EKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLA 319

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
            A + +       I  D   +  L   L    +  EA+ +L+ M ++D
Sbjct: 320 DAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKD 367



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 85/153 (55%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y  +IG LC +++ DEAL+++ +M+E G   +  T+  +++ L + KR+E+A  +
Sbjct: 504 PTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINV 563

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++VM E    PD+  Y  L+  +C    + A     K M +     D   Y+ L+ G C+
Sbjct: 564 LDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQ 623

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +G VE+A  +++ M++ G +   +TY  +M +L
Sbjct: 624 SGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 123/278 (44%), Gaps = 2/278 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
            P +A Y+ L+        ++  R +L       C     T+  +       + L +  +
Sbjct: 124 HPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARK 183

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            + ++ +    P   AY+ L+  LCK  +++E  ++++ M E G      +++ +++ L 
Sbjct: 184 LMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLC 243

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              + EEA  ++E M E +  PD+  YN L+  +C    +     +L+ M   +      
Sbjct: 244 ESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVI 303

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G  RA R+ +A+ ++  M   G S    TY  ++  L + G   +A + + V 
Sbjct: 304 TYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVM 363

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +D   D   +  L + L  L + ++A  +L+ M +R
Sbjct: 364 VEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLER 401



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 128/277 (46%), Gaps = 8/277 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L++       ++    LL       C  T  T+  +    +    L+D  R 
Sbjct: 265 PDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRV 324

Query: 93  LARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +  + K    P    Y+ L+  LCK  K++EA  ++++M E       +T+  +++ L +
Sbjct: 325 MEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCK 384

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++++A  L+E+M E    P+L  +N ++  +C  G +     VL+ M+E     D  T
Sbjct: 385 LGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVT 444

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  L+ G C+A R+++AF +L      G S   ++Y+ ++  L   G   +A + + +  
Sbjct: 445 YSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMT 498

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            +     +  +  +   L  +ER +EA  +L+ M++R
Sbjct: 499 KQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSER 535



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 82/168 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K++Y +++  LC   K++EA  V+D+M + G   ++  +  I+  L   +R +EA  +
Sbjct: 469 PDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKM 528

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++VM E    P+L  Y+ L+   C    +     VL  M E+    D  TY +L+ G C+
Sbjct: 529 LQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCK 588

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
             +++ A+   + M D G       Y  ++    + G   +A++ + +
Sbjct: 589 INKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQL 636



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 119/289 (41%), Gaps = 13/289 (4%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V     K+G  PD  T   Y+ L++       LE    LL       C     T++ + N
Sbjct: 324 VMEDMFKAGISPDLVT---YNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVN 380

Query: 79  TENSLSVLSDLCRTLAR--LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
               L  + D  R L    L++G  P    ++T+I   CK  K+DE  +V+++M E    
Sbjct: 381 GLCKLGKVDDA-RLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCT 439

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
              +T+  ++    +  RM++A+ ++       +SPD  +Y+ +L   C  G +     V
Sbjct: 440 PDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEV 493

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +  M ++     +  Y  ++ G C   R +EA  +L+ M + G      TY+ ++  L +
Sbjct: 494 MDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCK 553

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                 A+  + V   +    D   + SL      + + + A    K M
Sbjct: 554 TKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTM 602



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 2/208 (0%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P  S Y  LI    +       L + + M    F    IT + IL    +   ++ 
Sbjct: 18  DPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDR 77

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L     ++  SP    Y  L+   C    +     +L +M ++    DA  Y+ L+ 
Sbjct: 78  A--LSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIA 135

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+ G+++ A  +L+ M++        TY  ++    +     +A K +       +  
Sbjct: 136 GLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTP 195

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           DT  + +L + L    +  E + +L+EM
Sbjct: 196 DTVAYNALLNGLCKQNQLEEVSKLLEEM 223


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 113/268 (42%), Gaps = 37/268 (13%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
           EP    Y  +V+A   ER L+  R +LN+        +  T+N +          E +L 
Sbjct: 351 EPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALE 410

Query: 85  VL----SDLCR----TLARLDKGF----------------------PRKSAYDTLIGRLC 114
           +L    S+ CR    T   L  GF                      P    Y++LI   C
Sbjct: 411 ILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQC 470

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           K    D A +++D++ E G      T+   +  L + KRMEEA  L   +KE  +  +  
Sbjct: 471 KAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEV 530

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            Y  L+  +C  G +     +L++M  E    ++ TY++L+ G C+ G+V+E   ++  M
Sbjct: 531 MYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENM 590

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              G     +TY  ++  +LR G +  A
Sbjct: 591 SKMGVKPTVATYTILIEEMLREGDFDHA 618



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 98/208 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  ++  +CK +K+DE+ R+++ M E G   S +T++ ++       R+E A  +
Sbjct: 352 PNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEI 411

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M+     P+   YN L+  +  + ++     +L KM E KL     TY++L+   C+
Sbjct: 412 LGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCK 471

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG  + A+ LL  + ++G      TY+  +  L +     +A         + IK +  +
Sbjct: 472 AGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVM 531

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + +L        + +EA  +L+ M+  D
Sbjct: 532 YTALIDGHCKAGKIDEAISLLERMHSED 559



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 125/281 (44%), Gaps = 4/281 (1%)

Query: 33  PTSAYYDDLVNAA-GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           PT   Y  +++A  G++R+LE +      R R C  N  +T+  + +       L +  R
Sbjct: 317 PTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPN-VHTYTVMVDAMCKERKLDESRR 375

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  + +KG  P    Y+ LI   C+  +I+ AL ++ +M       +  T++ ++   +
Sbjct: 376 ILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFS 435

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + K + +A  L+  M E +++P L  YN L+   C  G+  +   +L  ++E  L  D  
Sbjct: 436 KRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQW 495

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY   +   C++ R+EEA  L   + + G       Y  ++    + G   +A+  +   
Sbjct: 496 TYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERM 555

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              D   ++  + SL   +    +  E   +++ M+K  +K
Sbjct: 556 HSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVK 596



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 6/171 (3%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  S Y++LI  +CK  K+ E L +V+ M++ G   +  T+  ++  + R    + A  
Sbjct: 561 LPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANR 620

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +   M      PD+  Y   +  YC  GN+    G++ +M E  +  D+ TY  L+    
Sbjct: 621 VFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYE 680

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           R G   +AF +L+RM+D G    +  + ++      + Y A     +++CG
Sbjct: 681 RLGLAYDAFNVLKRMLDAGCDPSHPIWNNL------IWYKASPFLMLLMCG 725



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 94/216 (43%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D  +P    Y  +I  L    +  E + + + M E     +  T+  ++  + + +++
Sbjct: 311 REDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKL 370

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E+  ++  M E  + P +  YN L+  YC +G + A   +L  ME      + RTY+ L
Sbjct: 371 DESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNEL 430

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G  +   V +A  LL +M++   +    TY  ++    + G++  A K + +     +
Sbjct: 431 ICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGL 490

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             D   +      L   +R  EA  +   + ++ +K
Sbjct: 491 VPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIK 526



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI   CK  KIDEA+ +++ M       ++ T++ ++  + +  +++E   ++E M 
Sbjct: 532 YTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMS 591

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           ++ V P +  Y  L+     +G+    + V  +M       D  TY A +   C +G V+
Sbjct: 592 KMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVK 651

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           EA  ++ RM++ G      TY  ++ A  RLG
Sbjct: 652 EAEGMMARMIEAGVMPDSLTYTLLISAYERLG 683



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 3/227 (1%)

Query: 86  LSDLCRTLARLDKGFPRK---SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           L D  R + R D     K    +Y+ L+  L +   IDE  RV   M       +  T +
Sbjct: 159 LLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLN 218

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +++  ++   + EA   +  + +  +SPD   Y  L+  YC   ++ +   V   M  +
Sbjct: 219 TMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNK 278

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
               +  +Y  ++ G C AGR++E   L ++M +D       TY  ++ AL       + 
Sbjct: 279 GCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEG 338

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +        R  + +   +  +   +    + +E+  IL EM ++ L
Sbjct: 339 MDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGL 385


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 1/198 (0%)

Query: 65  CCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALR 124
           C F+         N  N  +++  LC+ L R+D    + +     +  LC ++K ++A  
Sbjct: 451 CIFDKMRQQGLSPNVVNYGALIDALCK-LGRVDDAILKFNQMINEVYGLCTVEKWEKAEE 509

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +V  M + G  L  + F+ ++  L R  R+ EA  L+E+M  + V PD+ +YN L+  +C
Sbjct: 510 LVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHC 569

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
             G     + +L  M    L  +  TY+ L+ G C+A R+++A+ LLR M+ +G +    
Sbjct: 570 LTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVV 629

Query: 245 TYAHVMGALLRLGYYAQA 262
           TY  ++  L + G +++A
Sbjct: 630 TYNTILHGLFQTGRFSEA 647



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 103/218 (47%), Gaps = 4/218 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           DK  P +  Y  LIG  C++ +++    V  ++ + G+ ++ I F+ +L  L   KR++E
Sbjct: 189 DKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDE 248

Query: 157 AWG-LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK---LGADARTYD 212
           A   L+  M E   +P++ +YN L+  +C +        +L  M +++      D  +Y+
Sbjct: 249 ATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYN 308

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
            ++ G  R G+V++A+ L  +M+D G      TY  V+  L +     +A         +
Sbjct: 309 TVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDK 368

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +K     +  L    +   ++ E   +L+EM+  DL+
Sbjct: 369 GVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLE 406



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 91/206 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+   C   + DEA +++D+M   G   +  T++ +L    + +R+++A+ L
Sbjct: 556 PDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSL 615

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M     +PD+  YN +L      G  +    +   M   +   D  TY+ ++ G C+
Sbjct: 616 LREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCK 675

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V+EAF + + +   G  +   T+  ++GALL+ G    A+          +  D E 
Sbjct: 676 NNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVET 735

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  +   LI      E   +   M +
Sbjct: 736 YCLIAENLIKEGSLEELGVLFSAMEE 761



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 107/238 (44%), Gaps = 17/238 (7%)

Query: 89  LCRTLARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVVDI-MAEGGFG 135
            CR + RL+ GF                 ++ L+  LC  K++DEA  ++   M E G  
Sbjct: 205 FCR-MGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCT 263

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKE---IRVSPDLTAYNYLLTAYCFKGNLTAT 192
            + ++++ ++       R EEA  L+ VM +   +   PD+ +YN ++  +  +G +   
Sbjct: 264 PNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKA 323

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  +M +  +  D  TY+ ++ G C+A  V+ A  + ++M+D G      TY  ++  
Sbjct: 324 YNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHG 383

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            L  G + + V+ +      D++ D  ++  L   L    R  EA  I   + ++ +K
Sbjct: 384 YLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIK 441



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 83/184 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++TL+  LC+  ++ EA R++++M   G     I+++ ++       R +EA  L++VM 
Sbjct: 526 FNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMV 585

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            I + P+   YN LL  YC    +     +L++M       D  TY+ ++ G  + GR  
Sbjct: 586 SIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFS 645

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA  L   M++        TY  ++  L +     +A K       + ++L    F  + 
Sbjct: 646 EAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMI 705

Query: 286 SKLI 289
             L+
Sbjct: 706 GALL 709



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 1/159 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++  LCK   +DEA ++   +   G  L  ITF+ ++  L +G + E+A  L   + 
Sbjct: 666 YNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATIS 725

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+  Y  +      +G+L     +   MEE     ++R  +ALV      G + 
Sbjct: 726 AYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDIS 785

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            A   L ++ D+    L ++ A ++ +L   G Y Q  K
Sbjct: 786 RAGAYLSKL-DEKNFSLEASTASMLISLYSRGEYQQLAK 823



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 100/240 (41%), Gaps = 38/240 (15%)

Query: 97  DKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           D+G    P   +Y+T+I    +  ++D+A  +   M + G     +T++ ++  L + + 
Sbjct: 295 DQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQV 354

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           ++ A  + + M +  V P    YN L+  Y   G       +L++M    L  D   Y  
Sbjct: 355 VDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYAL 414

Query: 214 LVLGACRAGR---------------------VEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           L+   C+ GR                     ++EA  +  +M   G S     Y  ++ A
Sbjct: 415 LLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDA 474

Query: 253 LLRLGYYAQAV-KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           L +LG    A+ KF         ++  E++G     L  +E++ +A  ++ EM  + +++
Sbjct: 475 LCKLGRVDDAILKFN--------QMINEVYG-----LCTVEKWEKAEELVFEMLDQGIRL 521


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 28/251 (11%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + ++ L+ +   +SG  P+  T   Y  +++    +  ++T   L  +   + C     T
Sbjct: 58  VHRAYLLLKEMKESGLAPNVVT---YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVT 114

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKID 120
           +N         ++LS LCR    +D+ +            P K +YDTL+  LCK  KID
Sbjct: 115 YN---------TLLSGLCRN-GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKID 164

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
            AL+V +  + G      + +  +++ L +  R++EA  L E M+E    PD+  +  L+
Sbjct: 165 MALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALM 224

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG-- 238
              C    L     VL+ ME+     +  TY +L+ G C+ G+V +A  + +RM+  G  
Sbjct: 225 DGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 284

Query: 239 -QSVLYSTYAH 248
              V Y++  H
Sbjct: 285 PNVVTYNSLIH 295



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 95/207 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY TLI  LCK  ++DEA ++ + M E       +TF  ++  L +G R++EA  +
Sbjct: 180 PDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQV 239

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M++   +P++  Y+ L+   C  G +     V K+M    +  +  TY++L+ G C 
Sbjct: 240 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCM 299

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V+ A +L+  M   G      TY  ++  L + G   +A +       +    D   
Sbjct: 300 TNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT 359

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           +  L      LER + A  +  +M K+
Sbjct: 360 YSCLIGGFCKLERIDMARTLFDDMLKQ 386



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 2/237 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ L++       +++   L+ +     C     T+N + +         +  R
Sbjct: 284 EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANR 343

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               +   F  P    Y  LIG  CKL++ID A  + D M +       +TF  ++    
Sbjct: 344 LFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYC 403

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               +++A  L+E M     SPD+  Y  L+  +C  G +     VLK+M +     +  
Sbjct: 404 NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVV 463

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           TY AL+   CRAG+   A+ LL  MV +G      TY  ++G     G   +A K +
Sbjct: 464 TYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKML 520



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I   C+  K+D A ++   M E G   + +T++ +LS L R   M+EA+ L
Sbjct: 75  PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 134

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+E  + PD  +Y+ L+   C  G +     V +         D   Y  L+ G C+
Sbjct: 135 LDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCK 194

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR++EA  L  +M ++       T+  +M  L +     +A + +     R+   +   
Sbjct: 195 TGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVIT 254

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + SL   L    +  +A  + K M  R ++
Sbjct: 255 YSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 284



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 25/304 (8%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P++        K G  P+E T   Y+ L+N       +    YLL K  ++    +   
Sbjct: 23  LPEATTYFAKMKKKGTVPNEWT---YNVLINGFCKVHKVHRA-YLLLKEMKE----SGLA 74

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKID 120
            N +T +    +V+   CR   ++D  +            P    Y+TL+  LC+   +D
Sbjct: 75  PNVVTYS----TVIHGFCRQ-TKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMD 129

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA  ++D M E G      ++  +++ L +  +++ A  + E        PD+ AY+ L+
Sbjct: 130 EAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 189

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
              C  G L     + +KM E     D  T+ AL+ G C+  R++EA  +L  M D   +
Sbjct: 190 AGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCT 249

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
               TY+ ++  L + G    A +       R I+ +   + SL          + A  +
Sbjct: 250 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 309

Query: 301 LKEM 304
           ++EM
Sbjct: 310 MEEM 313



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 92/207 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK  +  EA R+   M         IT+  ++    + +R++ A  
Sbjct: 319 LPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMART 378

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + M +  V PD+  ++ L+  YC  G +     +L++M       D  TY +LV G C
Sbjct: 379 LFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC 438

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GR+ EA  +L+RM   G      TY  ++ A  R G    A K +    G  ++ +  
Sbjct: 439 KVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVI 498

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            + SL     G     EA  +L+ + +
Sbjct: 499 TYRSLIGGFCGTGDLEEARKMLERLER 525



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 94/199 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  +I  LCK  ++ EA      M + G   +  T++ +++   +  ++  A+ L++ MK
Sbjct: 10  WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK 69

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  ++P++  Y+ ++  +C +  +     + ++M E     +  TY+ L+ G CR G ++
Sbjct: 70  ESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMD 129

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA+ LL  M + G      +Y  +M  L + G    A+K        D   D   + +L 
Sbjct: 130 EAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 189

Query: 286 SKLIGLERFNEANFILKEM 304
           + L    R +EA  + ++M
Sbjct: 190 AGLCKTGRLDEACKLFEKM 208



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LCK  ++ +A  V   M   G   + +T++ ++        ++ A  L
Sbjct: 250 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 309

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME M      PD+  YN L+   C  G     + +   M+ +    D  TY  L+ G C+
Sbjct: 310 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 369

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
             R++ A  L   M+   Q+VL    T++ ++      G    A + +      D   D 
Sbjct: 370 LERIDMARTLFDDMLK--QAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDV 427

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKR 307
             + SL      + R  EA  +LK M KR
Sbjct: 428 YTYTSLVDGFCKVGRMVEARRVLKRMAKR 456



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           + IT+  ++  L +  R+ EA      MK+    P+   YN L+  +C    +     +L
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           K+M+E  L  +  TY  ++ G CR  +V+ A+ L R+MV++G      TY  ++  L R 
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 257 GYYAQAVKFV 266
           G   +A + +
Sbjct: 126 GLMDEAYELL 135



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 37/199 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+   CK+ ++ EA RV+  MA+ G   + +T+  ++    R  +   A+ L
Sbjct: 425 PDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKL 484

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME-EEKLGAD-----------A 208
           +E M    V P++  Y  L+  +C  G+L     +L+++E +E   AD            
Sbjct: 485 LEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLC 544

Query: 209 RT------------------------YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
           RT                        Y AL+ G C+   + +A  +L  M    +S   +
Sbjct: 545 RTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNA 604

Query: 245 -TYAHVMGALLRLGYYAQA 262
             Y  V+  L R G + +A
Sbjct: 605 EAYEAVIQELAREGRHEEA 623



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y +LIG  C    ++EA ++++ +  +         +  ++  L R  RM  A  
Sbjct: 495 PNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALE 554

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME-EEKLGADARTYDALVLGA 218
           L+E +K+    P    Y  L+   C    L     VL++M    K   +A  Y+A++   
Sbjct: 555 LLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQEL 614

Query: 219 CRAGRVEEAFVL 230
            R GR EEA  L
Sbjct: 615 AREGRHEEANAL 626


>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 97/205 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TLI   C++  IDEALR+ ++M   GF    +T++ IL  L    R+ EA  L+  M
Sbjct: 309 TYTTLIDGYCRMNDIDEALRLREVMESRGFCPGVVTYNSILRKLCEDGRIREANRLLTEM 368

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
              ++ PD    N L+ AYC   ++ +   V KKM E  L  D  +Y AL+ G C+   +
Sbjct: 369 SVKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLEL 428

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           + A   L  M++ G S  YS Y+ ++          +  K       R +  D  L+  L
Sbjct: 429 DNAKEELFSMIEKGLSPGYSAYSWLVDGFYNQNKQDEITKLPEEFEKRGLCPDVALYRGL 488

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
             ++  LE+ + A  + + M K+ L
Sbjct: 489 IRRICKLEQVDYAKVLFESMEKKGL 513



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 7/213 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A   L+  L K +  D   ++   M + G   +   ++ ++   ++    E+A  L
Sbjct: 166 PHLQACTVLLNSLVKERLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKL 225

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  V PD+  YN L++ YC K        V  +ME   +  D  TY++L+ G  R
Sbjct: 226 LSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSR 285

Query: 221 AGRVEEAFVLLRRMVDDGQSVL---YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            GR+ EA  L R++    + V+   + TY  ++    R+    +A++   V   R     
Sbjct: 286 EGRMREATRLFRKI----KGVVMANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFCPG 341

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              + S+  KL    R  EAN +L EM+ + ++
Sbjct: 342 VVTYNSILRKLCEDGRIREANRLLTEMSVKKIE 374



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 6/193 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     +TLI   CK++ +  A++V   M E G  L   ++  ++    +   ++ A   
Sbjct: 375 PDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELDNAKEE 434

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  +SP  +AY++L+  +  +      + + ++ E+  L  D   Y  L+   C+
Sbjct: 435 LFSMIEKGLSPGYSAYSWLVDGFYNQNKQDEITKLPEEFEKRGLCPDVALYRGLIRRICK 494

Query: 221 AGRVEEAFVLLRRMVDD---GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             +V+ A VL   M      G SV+Y+T A+   A  R G    A     V   R + ++
Sbjct: 495 LEQVDYAKVLFESMEKKGLMGDSVIYTTMAY---AYWRTGKVTDASALFDVMYNRRLMVN 551

Query: 278 TELFGSLGSKLIG 290
            +L+ SL +   G
Sbjct: 552 LKLYKSLSASYAG 564



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 1/207 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+ L+    K    ++A +++  M E G      T++ ++SV  +     EA  + + M
Sbjct: 205 VYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRM 264

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +   V+PD+  YN L+  +  +G +   + + +K++   + A+  TY  L+ G CR   +
Sbjct: 265 ERSGVAPDIVTYNSLIHGFSREGRMREATRLFRKIKGVVM-ANHVTYTTLIDGYCRMNDI 323

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA  L   M   G      TY  ++  L   G   +A + +     + I+ D     +L
Sbjct: 324 DEALRLREVMESRGFCPGVVTYNSILRKLCEDGRIREANRLLTEMSVKKIEPDNITCNTL 383

Query: 285 GSKLIGLERFNEANFILKEMNKRDLKM 311
            +    +E    A  + K+M +  LK+
Sbjct: 384 INAYCKIEDMVSAVKVKKKMIESGLKL 410


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 135/309 (43%), Gaps = 9/309 (2%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +++  L  K  + ++VLV   F K   F   P +  Y  L+      R L+    + ++ 
Sbjct: 202 TMINILCKKGKVQEAVLV---FNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRM 258

Query: 62  ARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLK 117
            +D C   + T++ + N    E  +    D+   +   +KG  P    Y   I  LC + 
Sbjct: 259 VKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMT--EKGIEPTVYTYTVPISSLCDIG 316

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           ++D+A+ +V  M + G   S  T+  I+S L R  +ME A G+   M +  + P+   YN
Sbjct: 317 RVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYN 376

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+   C +G       +   ME     A+A+TY+ ++ G      +E+A V+  +M+ D
Sbjct: 377 ALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKD 436

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G S    TY  ++   L+ GY   A +F+ +    + + D   +  L S      + + A
Sbjct: 437 GPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSA 496

Query: 298 NFILKEMNK 306
                EM K
Sbjct: 497 TSFFYEMLK 505



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 4/184 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y  +I   CK  KID AL + + M E G   S  T++ I+S L++G R  EA   
Sbjct: 510 PNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKF 569

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  + P+   Y  L+   C          +  +ME++    +A TY +L+ G C+
Sbjct: 570 CAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQ 629

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+ A     R+ ++G      TY+ ++  L R G   +A + V     + +    E+
Sbjct: 630 EGKVDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEI 685

Query: 281 FGSL 284
           + SL
Sbjct: 686 YCSL 689



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 2/206 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP-ILSVLTRGKRMEEAWGLME 162
             Y+ +I  L  +  I++A+ V + M + G   + +T++  I+  L RG  +  A   + 
Sbjct: 408 QTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRG-YLNNATRFLY 466

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
           +MKE    PD   Y  L++ +C  G L + +    +M +  +  +  TY A++ G C+ G
Sbjct: 467 MMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEG 526

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           +++ A  L  RM ++G S    TY  ++  L +   +++A KF      + ++ +T  + 
Sbjct: 527 KIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYT 586

Query: 283 SLGSKLIGLERFNEANFILKEMNKRD 308
           SL + L      N A  I  EM K++
Sbjct: 587 SLINGLCKNTATNLAFKIFHEMEKKN 612



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 79/163 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++T+I  LCK  K+ EA+ V + + +      A T+  ++    R +++++A+ +
Sbjct: 195 PSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEV 254

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +   +P+   Y+ L+   C +G +     +L++M E+ +     TY   +   C 
Sbjct: 255 FDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCD 314

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GRV++A  L+R M   G S    TY  ++  L R G    A+
Sbjct: 315 IGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAI 357



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 106/248 (42%), Gaps = 6/248 (2%)

Query: 47  HERDLETVRYLLNKRARDCCFNTANTFNFI----TNTENSLSVLSDLCRTLARLDKGFPR 102
           ++ D+     +LN+  +D     A+    +       E+ L  ++D    ++  D G   
Sbjct: 100 YKHDMGCFVSMLNRLVKDKILAPADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFG 159

Query: 103 KSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            + Y  +TL+ +L K   +  A  V   +   G   S +TF+ ++++L +  +++EA  +
Sbjct: 160 FTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLV 219

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              + +  + PD   Y  L+  +C    L     V  +M ++    ++ TY  L+ G C 
Sbjct: 220 FNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCN 279

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+ EA  +L  M + G      TY   + +L  +G    A+  V   G +      + 
Sbjct: 280 EGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQT 339

Query: 281 FGSLGSKL 288
           + ++ S L
Sbjct: 340 YTAIISGL 347



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 15/207 (7%)

Query: 78  NTENSLSVLSDLCRTLA---------RLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVV 126
           NT    S+++ LC+  A          ++K    P    Y +LI  LC+  K+D A R  
Sbjct: 581 NTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAER-- 638

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             + E G   +  T+  ++S L R  R  EA  L+E MKE  +SP +  Y  LL A+C  
Sbjct: 639 --LTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKS 696

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             +     +   M  +        Y  L+   C   R EEA  + + ++    +     +
Sbjct: 697 LKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVW 756

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRD 273
             ++  LL+ G     +KF+ +   R+
Sbjct: 757 TVLVDGLLQEGDSDLCMKFLYLMESRN 783



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 16/233 (6%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  Y  L+N             + ++  +  C   A+T+          S++  LC+
Sbjct: 579 QPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYT---------SLIYGLCQ 629

Query: 92  -----TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
                   RL +    P    Y TL+  LC+  + +EA ++V+ M E G   S   +  +
Sbjct: 630 EGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSL 689

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L    +  +++ A  +  +M      P L  Y  L+ A C          + + + +++ 
Sbjct: 690 LVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQW 749

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            +D   +  LV G  + G  +     L  M     +    TY  +   L ++G
Sbjct: 750 NSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVG 802



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG  P    Y +L+   CK  K+D AL + ++MA  GF      +  ++  L    R E
Sbjct: 676 EKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAE 735

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  + + + + + + DL  +  L+     +G+       L  ME         TY  L 
Sbjct: 736 EALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILA 795

Query: 216 LGACRAGR 223
               + G+
Sbjct: 796 RELSKVGK 803


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 16/224 (7%)

Query: 76  ITNTENSLS---VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKID 120
           +T   NS+S   ++  LC  + RL++ F            P    Y  LI  LC    ID
Sbjct: 260 VTCAPNSVSYSILIHGLCE-VGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLID 318

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A  + D M   G   +  T+  ++  L R  ++EEA G+   M + R+ P +  YN L+
Sbjct: 319 KAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALI 378

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             YC  G +     +L  ME+     + RT++ L+ G CR G+  +A  LL+RM+D+G S
Sbjct: 379 NGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLS 438

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
               +Y  ++  L R G+   A K +      DI+ D   F ++
Sbjct: 439 PDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAI 482



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 2/211 (0%)

Query: 96  LDKGFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKR 153
           L  GF   S   T L+   C+   + +AL+V D+M+ E     +++++  ++  L    R
Sbjct: 222 LKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGR 281

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +EEA+GL + M E    P    Y  L+ A C +G +     +  +M       +  TY  
Sbjct: 282 LEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTV 341

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+ G CR G++EEA  + R+MV D       TY  ++    + G    A + + V   R 
Sbjct: 342 LIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA 401

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            K +   F  L   L  + +  +A  +LK M
Sbjct: 402 CKPNVRTFNELMEGLCRVGKPYKAVHLLKRM 432



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 105/229 (45%), Gaps = 4/229 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           +P++  Y  L+ A      ++    L ++     C    +T+  + +    +  +   + 
Sbjct: 298 QPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANG 357

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           +CR + + D+ FP    Y+ LI   CK  ++  A  ++ +M +     +  TF+ ++  L
Sbjct: 358 VCRKMVK-DRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            R  +  +A  L++ M +  +SPD+ +YN L+   C +G++     +L  M    +  D 
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDC 476

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            T+ A++   C+ G+ + A   L  M+  G S+   T   ++  + ++G
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVG 525



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 90/177 (50%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           TLI  +CK+ K  +AL +++ + +     +  + + IL +L++G +++E   ++  + ++
Sbjct: 516 TLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKL 575

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            + P +  Y  L+      G++T +  +L+ M+      +   Y  ++ G C+ GRVEEA
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
             LL  M D G S  + TY  ++   +  G   +A++ V     R  +L+  ++ SL
Sbjct: 636 EKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSL 692



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 88/206 (42%), Gaps = 2/206 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  L++    +  +E    +  K  +D  F +  T+N + N       +     
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFE 392

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  ++K    P    ++ L+  LC++ K  +A+ ++  M + G     ++++ ++  L 
Sbjct: 393 LLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLC 452

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R   M  A+ L+  M    + PD   +  ++ A+C +G     S  L  M  + +  D  
Sbjct: 453 REGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEV 512

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMV 235
           T   L+ G C+ G+  +A  +L  +V
Sbjct: 513 TGTTLIDGVCKVGKTRDALFILETLV 538



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 27/231 (11%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           + G   DE T     D V   G  RD     ++L    +     T ++ N I      L 
Sbjct: 504 RKGISLDEVTGTTLIDGVCKVGKTRD---ALFILETLVKMRILTTPHSLNVI------LD 554

Query: 85  VLSDLCRT------LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           +LS  C+       L +++K G  P    Y TL+  L +   I  + R++++M   G   
Sbjct: 555 MLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLP 614

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           +   +  I++ L +  R+EEA  L+  M++  VSP+   Y  ++  Y   G L      +
Sbjct: 615 NVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETV 674

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           + M E     + R Y +L+ G          FVL ++ +D+ +    S  A
Sbjct: 675 RAMVERGYELNDRIYSSLLQG----------FVLSQKGIDNSEESTVSDIA 715


>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
          Length = 633

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 113/264 (42%), Gaps = 47/264 (17%)

Query: 21  RSFTKSGAFPDEPTSAY---YDDLVNAAGHERD----------LETVRYLLNKRARDCCF 67
           RS T +   P  P S +   Y+ L++A    RD          L+ +R LL +R    CF
Sbjct: 126 RSRTGTQPTPTRPRSPHPYDYNRLMSAHAGTRDGAGADRALHLLDEMRALLRRRPDAACF 185

Query: 68  NT-ANTFNFITNTENSLSVLSDL--------------------CRTLARLDKGF------ 100
            T A   +  +    +L+VL  +                    CR L R D  +      
Sbjct: 186 TTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACR-LRRFDAAYEVVRWM 244

Query: 101 ------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
                 P    Y TLI  LC   ++ EAL V+D+M E G   +A T+ PI+     G R+
Sbjct: 245 VANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRI 304

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L+  M     +P    YN L+ A C  G       +L++   +    D  TY + 
Sbjct: 305 HEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSY 364

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG 238
           + G C+AGR++++F L+ +M+ +G
Sbjct: 365 MDGLCKAGRIDKSFALVDKMLSNG 388



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 2/203 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  Y  +V+A      +   + LLN         +  T+N +      +    ++  
Sbjct: 285 QPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDA 344

Query: 92  TLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L     KG+ P    Y + +  LCK  +ID++  +VD M   G   S +T + +L  + 
Sbjct: 345 LLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVC 404

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R      A  L+E   E+    ++  YN ++   C +    +   +   M ++ +  ++ 
Sbjct: 405 RSSTAWAAKRLLECSAELGWDANVVNYNTVMRRLCDERRWLSVVKLFTDMAKKGIAPNSW 464

Query: 210 TYDALVLGACRAGRVEEAFVLLR 232
           T++ +V   C+ GR+ +A  LLR
Sbjct: 465 TFNIVVHSLCKLGRLHKALCLLR 487



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 1/171 (0%)

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY-CFKGNLTATSGVL 196
           A  F  + + L+   R   A  +++ M    V+PD  A   L+  Y C      A   V+
Sbjct: 182 AACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVV 241

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           + M    +  D  TY  L+ G C AG+V EA  +L  M+++G      TY  ++ A    
Sbjct: 242 RWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTG 301

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           G   +A + +           T  +  L   L  +  F E + +L+E   +
Sbjct: 302 GRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAK 352


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 11/231 (4%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PDE T   Y+ L+N    E +      +  +  R+    +  T+  + N   S+   
Sbjct: 110 GFTPDEVT---YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALIN---SMCKA 163

Query: 87  SDLCRTLARLD----KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            +L R +   D    +G  P +  Y TLI    +   ++EA R+++ M E GF  S +T+
Sbjct: 164 RNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 223

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           +  +      +RMEEA G+++ M E  ++PD+ +Y+ +++ +C KG L     + ++M E
Sbjct: 224 NAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVE 283

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + +  DA TY +L+ G C   R+ EA  L + M+D G      TY  ++ A
Sbjct: 284 KGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINA 334



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 92/210 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI   CK+ +IDEA  ++  M+  G   + I+++ I++ L R   M+EAW 
Sbjct: 42  LPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWE 101

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++E M     +PD   YN LL  YC +GN      +  +M    +     TY AL+   C
Sbjct: 102 ILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMC 161

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +A  +  A     +M   G      TY  ++    R G   +A + +             
Sbjct: 162 KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 221

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + +       LER  EA  +++EM ++ L
Sbjct: 222 TYNAFIHGHCVLERMEEALGVVQEMVEKGL 251



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 101/209 (48%), Gaps = 6/209 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C + ++ + L     M   G   + +T++ ++    +  R++EA+GL
Sbjct: 8   PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    + P+L +YN ++   C +G++     +L++M  +    D  TY+ L+ G C+
Sbjct: 68  LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCK 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G   +A V+   MV +G S    TY  ++ ++ +     +A++F      R ++ +   
Sbjct: 128 EGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERT 187

Query: 281 FGSLGSKLIGLER---FNEANFILKEMNK 306
           + +L   + G  R    NEA  IL EM +
Sbjct: 188 YTTL---IDGFSRQGLLNEAYRILNEMTE 213



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P +  Y+TL+   CK     +AL +   M   G   S +T+  +++ + + + +  
Sbjct: 109 KGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNR 168

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A    + M+   + P+   Y  L+  +  +G L     +L +M E        TY+A + 
Sbjct: 169 AMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH 228

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C   R+EEA  +++ MV+ G +    +Y+ ++    R G   +A +       + +  
Sbjct: 229 GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 288

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDY 318
           D   + SL   L  + R  EA  + +EM    L MG    ++
Sbjct: 289 DAVTYSSLIQGLCEMRRLTEACDLSQEM----LDMGLPPDEF 326



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%)

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
           RVSP++  YN L+  +C  G L    G   +ME      +  TY+ L+   C+ GR++EA
Sbjct: 5   RVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA 64

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
           F LL+ M   G      +Y  ++  L R G   +A + +   G +    D   + +L + 
Sbjct: 65  FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNG 124

Query: 288 LIGLERFNEANFILKEM 304
                 F++A  I  EM
Sbjct: 125 YCKEGNFHQALVIHAEM 141



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 16/178 (8%)

Query: 96  LDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G P     Y TLI   C    +++AL + D M   GF   A+T+  +++ L +  R 
Sbjct: 317 LDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQART 376

Query: 155 EEAWGLM-EVMKEIRVSPDLT--------------AYNYLLTAYCFKGNLTATSGVLKKM 199
            EA  L+ +++ E  V  D+T              +   L+  +C KG +     V + M
Sbjct: 377 REAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESM 436

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            E         Y+ ++ G CR G + +AF L + M+  G      T   ++ AL + G
Sbjct: 437 VERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 494



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 87/227 (38%), Gaps = 25/227 (11%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SL++ L     + ++  +++     G  PDE T   Y  L+NA   E DL    +L ++ 
Sbjct: 295 SLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFT---YTTLINAYCVEGDLNKALHLHDEM 351

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKI 119
                   A T++ + N  N  +   +  R L +L  ++  P    YDTLI     +   
Sbjct: 352 IHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNI--- 408

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            E   VV ++   GF +  +              M EA  + E M E    P    YN +
Sbjct: 409 -EFKSVVALIK--GFCMKGL--------------MHEADRVFESMVERNHKPGEAVYNVI 451

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
           +  +C  GNL     + K+M          T   L+    + G  EE
Sbjct: 452 IHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEE 498


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 18/278 (6%)

Query: 3   LLRKLPTKFLIPQSVLVTR---SFTKSGAFPD-------------EPTSAYYDDLVNAAG 46
           L  ++  K L P SV  T     + K+G   D              P    Y  L++   
Sbjct: 408 LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 467

Query: 47  HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKSA 105
            E DL++   LL++  +        T+N I N       + +  + +   +  G    + 
Sbjct: 468 KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 527

Query: 106 -YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TL+   CK  ++D+A  ++  M   G   + +TF+ +++       +E+   L+  M
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               ++P+ T +N L+  YC + NL A + + K M    +G D +TY+ LV G C+A  +
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +EA+ L + M   G SV  STY+ ++   L+   + +A
Sbjct: 648 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEA 685



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 7/249 (2%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C+N A ++N + +    L  + +    L  ++ KG+ P   +Y T++   C+  ++D+  
Sbjct: 243 CWNVA-SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVW 301

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           +++++M   G   ++  +  I+ +L R  ++ EA      M    + PD   Y  L+  +
Sbjct: 302 KLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGF 361

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C +G++ A S    +M    +  D  TY A++ G C+ G + EA  L   M   G     
Sbjct: 362 CKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDS 421

Query: 244 STYAHVMGALLRLGYYAQA--VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
            T+  ++    + G+   A  V   M+  G    + T  + +L   L      + AN +L
Sbjct: 422 VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVT--YTTLIDGLCKEGDLDSANELL 479

Query: 302 KEMNKRDLK 310
            EM K  L+
Sbjct: 480 HEMWKIGLQ 488



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 88/207 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI   CK   + +A RV + M + G   + +T+  ++  L +   ++ A  L
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 478

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +I + P++  YN ++   C  GN+     ++ + E   L AD  TY  L+   C+
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +G +++A  +L+ M+  G      T+  +M      G      K +     + I  +   
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           F SL  +         A  I K+M  R
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSR 625



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 93/238 (39%), Gaps = 11/238 (4%)

Query: 84  SVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           S++  LCR   LA  ++ F         P    Y TLI   CK   I  A +    M   
Sbjct: 321 SIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 380

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
                 +T+  I+S   +   M EA  L   M    + PD   +  L+  YC  G++   
Sbjct: 381 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 440

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             V   M +     +  TY  L+ G C+ G ++ A  LL  M   G      TY  ++  
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 500

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           L + G   +AVK V       +  DT  + +L          ++A  ILKEM  + L+
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ 558



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 86/190 (45%), Gaps = 6/190 (3%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K   A+ V     E G   +  +++ ++  + +  R++EA  L+ +M+    +PD+ +Y+
Sbjct: 226 KTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 285

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++  YC  G L     +++ M+ + L  ++  Y +++   CR  ++ EA      M+  
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345

Query: 238 G---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           G    +V+Y+T   ++    + G    A KF      RDI  D   + ++ S    +   
Sbjct: 346 GILPDTVVYTT---LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 402

Query: 295 NEANFILKEM 304
            EA  +  EM
Sbjct: 403 VEAGKLFHEM 412



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 5/202 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           I ++V +   F  +G   D  T   Y  L++A     +++  + +L +        T  T
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVT---YTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 563

Query: 73  FNFITNTENSLSVLSDLCRTL-ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           FN + N      +L D  + L   L KG  P  + +++L+ + C    +  A  +   M 
Sbjct: 564 FNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMC 623

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G G    T+  ++    + + M+EAW L + MK    S  ++ Y+ L+  +  +    
Sbjct: 624 SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 683

Query: 191 ATSGVLKKMEEEKLGADARTYD 212
               V  +M  E L AD   +D
Sbjct: 684 EAREVFDQMRREGLAADKEIFD 705



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 9/201 (4%)

Query: 115 KLKKIDEALRVVDIMAEG--GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           KL   D  ++  D++      +G     F     VL     + EA  + E M    +   
Sbjct: 150 KLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLS 209

Query: 173 LTAYNYLLTAY---CFKGNLTATSG-VLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + + N  LT     C+K   TAT+  V ++  E  +  +  +Y+ ++   C+ GR++EA 
Sbjct: 210 VDSCNVYLTRLSKDCYK---TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAH 266

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            LL  M   G +    +Y+ V+    R G   +  K + V   + +K ++ ++GS+   L
Sbjct: 267 HLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLL 326

Query: 289 IGLERFNEANFILKEMNKRDL 309
             + +  EA     EM ++ +
Sbjct: 327 CRICKLAEAEEAFSEMIRQGI 347


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 98/209 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+   C+++++++AL +V  M + G   +AI ++PI+  L    R +EA G+
Sbjct: 287 PSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPIIDALAEAGRFKEALGM 346

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME    +++ P L+ YN L+  +C  G++   S +LKKM          TY+       R
Sbjct: 347 MERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIPTTYNYFFRYFSR 406

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+E   L  +M++ G +    TY  V+  L        AV+  M    +   +D   
Sbjct: 407 CGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQVSMEMRHKGYDMDLAT 466

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
              L   L  + +  EA    ++M +R +
Sbjct: 467 STMLTHLLCKMHKLEEAFAEFEDMIRRGI 495



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 76/157 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++    + +K+  A R+ + M       S +T+  ++    R +R+E+A  +
Sbjct: 252 PSIRVYNIMLNGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEM 311

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  + P+   YN ++ A    G      G++++    ++G    TY++LV G C+
Sbjct: 312 VGEMTKEGIKPNAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCK 371

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           AG +E A  +L++M+  G   + +TY +      R G
Sbjct: 372 AGDIEGASKILKKMISRGFLPIPTTYNYFFRYFSRCG 408



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 67/165 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y++L+   CK   I+ A +++  M   GF     T++      +R  +++E   L
Sbjct: 357 PTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNL 416

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E   +PD   Y+ +L   C +  L     V  +M  +    D  T   L    C+
Sbjct: 417 YTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQVSMEMRHKGYDMDLATSTMLTHLLCK 476

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             ++EEAF     M+  G    Y T+  +   L + G    A K 
Sbjct: 477 MHKLEEAFAEFEDMIRRGIIPQYLTFQKLNVELKKQGMNEMARKL 521



 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 42/93 (45%)

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P +  YN +L  +     L     + ++M+ E +     TY  LV G CR  RVE+A  +
Sbjct: 252 PSIRVYNIMLNGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEM 311

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           +  M  +G       Y  ++ AL   G + +A+
Sbjct: 312 VGEMTKEGIKPNAIVYNPIIDALAEAGRFKEAL 344


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 80/149 (53%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TLI  LCK ++I++A  + D M   G   S++T++ ++  L + KR+EEA  LM+ M
Sbjct: 440 VYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQM 499

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               + PD   YN LLT +C  G++     +++ M       D  TY  L+ G CRAGRV
Sbjct: 500 IMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRV 559

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           + A  LLR +   G  +    Y  V+ AL
Sbjct: 560 DVASKLLRSVQMKGIVLTPHAYNPVIQAL 588



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 129/283 (45%), Gaps = 14/283 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETV----RYLLNKRARD--CCFNT-ANTFNFITNTENSLSV 85
           P +  Y+ L++A   E ++E      R L++K      C FNT         N + ++ +
Sbjct: 331 PNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEM 390

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
             ++       +KG  P +  Y  LI  LC  +++ EAL ++  M   G   +A+ ++ +
Sbjct: 391 FEEM------KNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTL 444

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L + +R+E+A  + + M+ + VS     YN L+   C    +   S ++ +M  E L
Sbjct: 445 IDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGL 504

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY++L+   CR G +E+A  +++ M  +G      TY  ++G L R G    A K
Sbjct: 505 KPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASK 564

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            +     + I L    +  +   L   +R  E   + +EM ++
Sbjct: 565 LLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEK 607



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 126/283 (44%), Gaps = 8/283 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRA-RDCCFNTANTFNFITNT---ENSLSVLS 87
           +P    Y+ L++      + E    +L +   R+C  NT  T+N + +    EN +   +
Sbjct: 295 DPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTV-TYNTLISALCKENEIEAAT 353

Query: 88  DLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           DL R L  + KG  P    ++TLI  LC  K  D A+ + + M   G      T+  ++ 
Sbjct: 354 DLARIL--VSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILID 411

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L   +R++EA  L++ M+    + +   YN L+   C    +     +  +ME   +  
Sbjct: 412 SLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSR 471

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            + TY+ L+ G C+  RVEEA  L+ +M+ +G      TY  ++    R+G   +A   V
Sbjct: 472 SSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIV 531

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                   + D   +G+L   L    R + A+ +L+ +  + +
Sbjct: 532 QTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGI 574



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 82/158 (51%), Gaps = 1/158 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           ++GF P +  +++L+   C++  +++AL +VD M E GF     T++ ++S + +    E
Sbjct: 256 EEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFE 315

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  +++ M     SP+   YN L++A C +  + A + + + +  + L  D  T++ L+
Sbjct: 316 KAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLI 375

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            G C +   + A  +   M + G      TY+ ++ +L
Sbjct: 376 QGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSL 413



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 117/274 (42%), Gaps = 9/274 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P + +Y+  +NA   +  L+ V  L +K   +      +TFN +         L     
Sbjct: 120 KPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAIL 179

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  + + G  P +  + TL+    +   ++ AL++   M   G  L+ ++   +++   
Sbjct: 180 MLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFC 239

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  R+EEA   +  + E   SPD   +N L+  +C  GN+     ++  M E+    D  
Sbjct: 240 KEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVY 299

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY++L+ G C+ G  E+A  +L++M+    S    TY  ++ AL +      A     + 
Sbjct: 300 TYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARIL 359

Query: 270 GGRDIKLDTELFGSLGSKL-------IGLERFNE 296
             + +  D   F +L   L       I +E F E
Sbjct: 360 VSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEE 393



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 118/266 (44%), Gaps = 18/266 (6%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLI 110
           +++  LL +         A TF  +  +  +   + +L + L   + GF P  + Y+  +
Sbjct: 72  DSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILEN-ELGFKPDTNFYNIAL 130

Query: 111 GRLCKLKKIDEALRVVDI----MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
             L +    D  L++V++    M   G  L   TF+ ++  L +  ++  A  ++E M  
Sbjct: 131 NALVE----DNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMAN 186

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR----TYDALVLGACRAG 222
             + PD   +  L+  +  +G+L   +G LK M+++ LG        +   LV G C+ G
Sbjct: 187 HGLKPDEITFTTLMQGFIEEGDL---NGALK-MKKQMLGYGCLLTNVSVKVLVNGFCKEG 242

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           RVEEA   +  + ++G S    T+  ++    R+G    A+  V     +    D   + 
Sbjct: 243 RVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYN 302

Query: 283 SLGSKLIGLERFNEANFILKEMNKRD 308
           SL S +  L  F +A  IL++M  R+
Sbjct: 303 SLISGMCKLGEFEKAIEILQQMILRE 328



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 2/158 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           +TL+ +L +    D    ++  +   G   +A TF  ++   T    +E    ++E   E
Sbjct: 59  ETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILE--NE 116

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
           +   PD   YN  L A      L     +  KM  E +  D  T++ L+   C+A ++  
Sbjct: 117 LGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRP 176

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           A ++L  M + G      T+  +M   +  G    A+K
Sbjct: 177 AILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALK 214



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           D+ +T+A  +   P    Y TLIG LC+  ++D A +++  +   G  L+   ++P++  
Sbjct: 529 DIVQTMAS-NGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQA 587

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN-LTATSGVLKKMEEEKLGA 206
           L   KR +E   L   M E    PD   +  +    C  G  +        +M E+ +  
Sbjct: 588 LFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILP 647

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMV 235
           +  ++  L  G C    +E+  + L  MV
Sbjct: 648 EFPSFGFLAEGLCSLS-MEDTLIELINMV 675


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 6/226 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L +    + D++    LL++ +       A T+N + N       L    RT
Sbjct: 464 PNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRT 523

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +A +D     P    Y TLI  LCK   +D A  ++  M + G   + +T++ +++    
Sbjct: 524 MADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 583

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R+E    L++ M E  + P+   YN L+  YC + N+ +T+ + K M    +G +  T
Sbjct: 584 SGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENT 643

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           Y+ L+ G C+A  ++EA      M+  G  +  ++Y+    AL+RL
Sbjct: 644 YNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYS----ALIRL 685



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 5/230 (2%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           ++L V+ D+ +    LD+       Y T++   C    +  A R  D M   G     +T
Sbjct: 344 DALRVVEDMVQRKVILDEAL-----YTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVT 398

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  +++ L R   +EEA  L++ M   R+  D   Y  L+  YC +G +     +   M 
Sbjct: 399 YTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMV 458

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           +  +  +  TY AL  G C+ G V+ A  LL  M + G  +   TY  ++  L + GY  
Sbjct: 459 QRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLE 518

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           QA++ +       +K D   + +L   L      + A+ +L+EM  + +K
Sbjct: 519 QAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIK 568



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 99/211 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C L +++ A++++D M  GG   +A  +  ++++L     + +A  +
Sbjct: 289 PDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRV 348

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M + +V  D   Y  +L+ +C KG+L +      +M+ + L  D  TY  ++ G CR
Sbjct: 349 VEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCR 408

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A  +EEA  LL+ M      V   TY  ++    + G  A+A +       R +  +   
Sbjct: 409 AVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVT 468

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           + +L   L        AN +L EM+ + L++
Sbjct: 469 YTALTDGLCKQGDVQAANELLHEMSNKGLEL 499



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 81/204 (39%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI   CK  K+ EA ++ + M + G   + +T+  +   L +   ++ A  L+  M 
Sbjct: 434 YTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMS 493

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +  +   YN L+   C  G L      +  M+   L  D  TY  L+   C++G ++
Sbjct: 494 NKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLD 553

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A  LL+ M+D G      TY  +M      G      K +     ++I  +   + SL 
Sbjct: 554 RAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLM 613

Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
            +            I K M  RD+
Sbjct: 614 KQYCIENNMKSTTEIYKGMRSRDV 637



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSD 88
           +PT   Y+ L+N       +E  + LL+          A T+N +      EN++   ++
Sbjct: 568 KPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTE 627

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + + +   D G P ++ Y+ LI   CK + + EAL   D M + GF L+A ++  ++ +L
Sbjct: 628 IYKGMRSRDVG-PNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLL 686

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
            + K+  EA  L   M++  ++ +   Y++ +     + NL +T  +  ++ E  +
Sbjct: 687 NKKKKFVEARELFHDMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDELVEASI 742



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 87/209 (41%), Gaps = 11/209 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A + ++ RL     +DEA+ +   +       +  +++ +L  L    R+++A  L
Sbjct: 230 PSPEACNAVLSRL----PLDEAIELFQELPHK----NVCSYNILLKALCDAGRVKDARQL 281

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +   E+  +PD+  Y  L+  +C  G L     +L +M    +  +A  Y ++V   C 
Sbjct: 282 FD---EMASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCD 338

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + +A  ++  MV     +  + Y  V+      G    A ++      + +  D   
Sbjct: 339 KGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVT 398

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + ++ + L       EA  +L+EM  R L
Sbjct: 399 YTTMINGLCRAVELEEAEKLLQEMWARRL 427



 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 4/155 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LDKG  P    Y+ L+   C   +++   +++D M E     +A T++ ++        M
Sbjct: 563 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNM 622

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +    + + M+   V P+   YN L+  +C   N+        +M ++     A +Y AL
Sbjct: 623 KSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSAL 682

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTY 246
           +    +  +  EA  L   M  +G   +S +Y  Y
Sbjct: 683 IRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFY 717


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 23/221 (10%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  L +  ++++A  +   M E GF L    ++ +++   R KR+ EA+ L
Sbjct: 351 PDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYEL 410

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MKE+ + PD+  YN LL+  C  G+  A   +L KM ++       T+  LV G C+
Sbjct: 411 LQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCK 470

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            G+++EA  +LR M + G    +V+Y+T                 + F  +C   D+ L 
Sbjct: 471 VGKIDEALRILRSMDESGIHPNNVIYNTL----------------IDF--LCKRGDVDLA 512

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL-KMGFKLRD 317
            ELF  +  K +        N +LK +  +++ +  F+L D
Sbjct: 513 IELFDEMKEKSVP-ANVTTFNALLKGLRDKNMPEKAFELMD 552



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 111/250 (44%), Gaps = 47/250 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKRMEEAW 158
           P    Y  L+  LCK  ++ +ALRV+D M+     +    +T + ++  L +  R++EA 
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL 229

Query: 159 GLMEV-MKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
             +E  M  +    P+   YN L+ A+C  GN++    +++KME E +  +  T + +V 
Sbjct: 230 AFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVG 289

Query: 217 GACRAGRVEEAFVLLR--RMV---DDGQSVLYSTYAHVMGALLRLGYYAQAVK------- 264
           G CRAGR   A    R  R V     G +V YST   ++GALL       A++       
Sbjct: 290 GLCRAGRTGAALEFFREKRTVWPEGKGNAVTYST---LVGALLHTNNVGMAMELFHEKMS 346

Query: 265 ----------FVMVCG----GR--------------DIKLDTELFGSLGSKLIGLERFNE 296
                     F M+ G    GR                KLDT+ +  L +     +R +E
Sbjct: 347 EGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHE 406

Query: 297 ANFILKEMNK 306
           A  +L+EM +
Sbjct: 407 AYELLQEMKE 416



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 2/150 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L++ +    D   V  LL K   D C  +  TF  + +    +  + +  R 
Sbjct: 421 PDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRI 480

Query: 93  LARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  +D+    P    Y+TLI  LCK   +D A+ + D M E     +  TF+ +L  L  
Sbjct: 481 LRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRD 540

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
               E+A+ LM+ M+E R  PD    + L+
Sbjct: 541 KNMPEKAFELMDQMREERCFPDYVTVDVLM 570



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+   CK         ++  M + G   S ITF  ++    +  +++EA  +
Sbjct: 421 PDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRI 480

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  + P+   YN L+   C +G++     +  +M+E+ + A+  T++AL+ G   
Sbjct: 481 LRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRD 540

Query: 221 AGRVEEAFVLLRRM 234
               E+AF L+ +M
Sbjct: 541 KNMPEKAFELMDQM 554



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TL+   CK+ KIDEALR++  M E G   + + ++ ++  L +   ++ A  L
Sbjct: 456 PSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIEL 515

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            + MKE  V  ++T +N LL     K        ++ +M EE+   D  T D L+
Sbjct: 516 FDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLM 570



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 13/218 (5%)

Query: 97  DKGFPRK-SAYDTLIGRLCKLKKIDEALRVV----DIMAEGGFGLSAITFHPILSVLTRG 151
           ++G P+     +T++G LC+  +   AL        +  EG    +A+T+  ++  L   
Sbjct: 274 NEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKG--NAVTYSTLVGALLHT 331

Query: 152 KRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +  A  L  E M E   SPD   Y  +++     G L     +   M+E     D + 
Sbjct: 332 NNVGMAMELFHEKMSEGH-SPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKA 390

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MV 268
           Y+ L+ G CR  R+ EA+ LL+ M + G      TY  ++    + G +A   + +  M+
Sbjct: 391 YNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMI 450

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             G    + T  FG+L      + + +EA  IL+ M++
Sbjct: 451 DDGCQPSVIT--FGTLVHGYCKVGKIDEALRILRSMDE 486


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 134/275 (48%), Gaps = 10/275 (3%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHE-RDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           G  PD  T   Y+ +VN    E R  + + +L +  +  C  NT  ++N +     +   
Sbjct: 221 GCAPDIIT---YNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTV-SYNIVLKGLCTAER 276

Query: 86  LSDLCRTLARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
             D  + +A +  KG+P     ++ LI  LC+   ++ A+ V+D + + G   ++++++P
Sbjct: 277 WEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNP 336

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           IL    + K+M+ A   +E+M      PD+ +YN LLTA C  G + A   +L +++++ 
Sbjct: 337 ILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG 396

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
                 +Y+ ++ G  +AG+ +EA  LL  MV  G      TY+ +   L R     +A+
Sbjct: 397 CTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAI 456

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
           +         I+ +T L+ ++   L+GL +  E +
Sbjct: 457 RAFCKVQDMGIRPNTVLYNAI---LLGLCKRRETH 488



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LC   +   AL V+D M   G     +T+  +L    +    ++A  L
Sbjct: 154 PDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKL 213

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+    +PD+  YN ++   C +G +      LK +       +  +Y+ ++ G C 
Sbjct: 214 LDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCT 273

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           A R E+A  L+  M   G      T+  ++  L R G    A++ +
Sbjct: 274 AERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVL 319



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 78/163 (47%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P   +Y+TL+  LC+  ++D A+ ++  + + G     I+++ ++  LT+  + +EA  
Sbjct: 363 YPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALE 422

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M    + PD+  Y+ + +  C +  +        K+++  +  +   Y+A++LG C
Sbjct: 423 LLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLC 482

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +      A  L   M+ +G     STY  ++  L   G   +A
Sbjct: 483 KRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEA 525



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 94/211 (44%), Gaps = 7/211 (3%)

Query: 79  TENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           T N+L VL D+ R      +G  P    Y  L+   CK     +A++++D M   G    
Sbjct: 172 TGNALVVLDDMLR------RGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPD 225

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            IT++ +++ + +  R+++A   ++ +      P+  +YN +L   C          ++ 
Sbjct: 226 IITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMA 285

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M ++    +  T++ L+   CR G VE A  +L ++   G +    +Y  ++ A  +  
Sbjct: 286 EMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQK 345

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
              +A+ FV +   R    D   + +L + L
Sbjct: 346 KMDRAMAFVELMVSRGCYPDIVSYNTLLTAL 376



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 18/204 (8%)

Query: 109 LIGRLCKLKKIDEALRVV-----DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           LI +LC   +  EA RV+     D+MA        +  + +   L   +R+         
Sbjct: 100 LIKKLCASGRTAEARRVLAACEPDVMAYNAM----VAGYCVTGQLDAARRL--------- 146

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           + ++ + PD   YN L+   C +G       VL  M       D  TY  L+   C+   
Sbjct: 147 VADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSG 206

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
            ++A  LL  M   G +    TY  V+  + + G    A++F+        + +T  +  
Sbjct: 207 YKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNI 266

Query: 284 LGSKLIGLERFNEANFILKEMNKR 307
           +   L   ER+ +A  ++ EM+++
Sbjct: 267 VLKGLCTAERWEDAEKLMAEMSQK 290


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 4/210 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I   CKL+KI EA +++ +MA  G   + I+++ +++ L R  +M+E   
Sbjct: 235 LPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSE 294

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++E M + R  PD   +N L+  YC  GN      +  +M +  L  +  TY  L+   C
Sbjct: 295 ILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMC 354

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLD 277
           +AG +  A   L +M D G      TY  ++    + G+  QA + +  MV  G    + 
Sbjct: 355 KAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTII 414

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
           T  + +L +    L R  +A+ +L+EM +R
Sbjct: 415 T--YNALINGHCILGRMEDASGLLQEMIER 442



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 79/155 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  +CK   ++ A+  +D M + G   +  T+  ++   ++   +++A+ +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M+ M E   +P +  YN L+  +C  G +   SG+L++M E     D  +Y  ++ G CR
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              +E+AF L   MV  G S   +TY+ ++  L +
Sbjct: 461 NQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 97/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C    ++  L     M   G   + +T++ I+    + +++ EA+ L
Sbjct: 201 PNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKL 260

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M    ++P+L +YN ++   C +G +  TS +L++M + +   D  T++ L+ G C 
Sbjct: 261 LRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCN 320

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G   +A VL   MV +G S    TY  ++ ++ + G   +A++F+     R +  +   
Sbjct: 321 VGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRT 380

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L           +A  I+KEM
Sbjct: 381 YTTLIDGFSQQGFLKQAYQIMKEM 404



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR-MEEAWGLME 162
           + +D ++    ++  I++AL +V++    GF    ++++ IL  + R K+ ++ A G+ +
Sbjct: 133 AVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFK 192

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M E  VSP++  YN L+  +C  GNL        +ME      +  TY+ ++   C+  
Sbjct: 193 EMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLR 252

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           ++ EAF LLR M   G +    +Y  V+  L R G   +  + +     R    D   F 
Sbjct: 253 KIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFN 312

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDL 309
           +L +    +  F++A  +  EM K  L
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGL 339



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++TLI   C +    +AL +   M + G   + +T+  +++ + +   +  A   
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++  + P+   Y  L+  +  +G L     ++K+M E        TY+AL+ G C 
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+E+A  LL+ M++ G      +Y+ ++    R     +A +  +    + I  D   
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL   L    R  E   + +EM
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEM 509



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 94/206 (45%), Gaps = 2/206 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
            P    Y  L++    +  L+    ++ +   +    T  T+N + N    L  + D   
Sbjct: 375 HPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASG 434

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  + ++GF P   +Y T+I   C+ +++++A ++   M   G      T+  ++  L 
Sbjct: 435 LLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC 494

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + +R+ E   L + M  + + PD   Y  L+ AYC +G+L     +  +M ++    D  
Sbjct: 495 KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIV 554

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMV 235
           TY+ L+ G  +  R +EA  LL +++
Sbjct: 555 TYNVLINGFNKQSRTKEAKRLLLKLL 580



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 7/186 (3%)

Query: 74  NFITNTE--NSLSVLSDLCRTLARLDKG-----FPRKSAYDTLIGRLCKLKKIDEALRVV 126
           N +T T   NS+    +L R +  LD+       P    Y TLI    +   + +A +++
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIM 401

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M E GF  + IT++ +++      RME+A GL++ M E    PD+ +Y+ +++ +C  
Sbjct: 402 KEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRN 461

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             L     +  +M  + +  D  TY +L+ G C+  R+ E   L + M+  G      TY
Sbjct: 462 QELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTY 521

Query: 247 AHVMGA 252
             ++ A
Sbjct: 522 TSLINA 527



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 15/153 (9%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +LI   C    +D+ALR+ D M + GF    +T++ +++   +  R +EA  L
Sbjct: 516 PDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRL 575

Query: 161 MEVMKEIRVSPDLTAYNYL---------------LTAYCFKGNLTATSGVLKKMEEEKLG 205
           +  +      P+   YN L               +  +C KG +     VL+ M ++   
Sbjct: 576 LLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYK 635

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            +   Y+ ++ G  + G +E+A+ L + M+  G
Sbjct: 636 LNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG 668



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 87/215 (40%), Gaps = 28/215 (13%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEA 122
           FI +  +  +++S  CR    L+K F            P  + Y +LI  LCK +++ E 
Sbjct: 444 FIPDVVSYSTIISGFCRN-QELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEV 502

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
             +   M   G     +T+  +++       +++A  L + M +   SPD+  YN L+  
Sbjct: 503 CDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLING 562

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYD---------------ALVLGACRAGRVEEA 227
           +  +        +L K+  E+   +  TY+               AL+ G C  G + EA
Sbjct: 563 FNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEA 622

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             +L  M+  G  +    Y  ++    ++G   +A
Sbjct: 623 DRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKA 657


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 23/221 (10%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  L +  ++++A  +   M E GF L    ++ +++   R KR+ EA+ L
Sbjct: 351 PDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYEL 410

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MKE+ + PD+  YN LL+  C  G+  A   +L KM ++       T+  LV G C+
Sbjct: 411 LQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCK 470

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            G+++EA  +LR M + G    +V+Y+T                 + F  +C   D+ L 
Sbjct: 471 VGKIDEALRILRSMDESGIHPNNVIYNTL----------------IDF--LCKRGDVDLA 512

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL-KMGFKLRD 317
            ELF  +  K +        N +LK +  +++ +  F+L D
Sbjct: 513 IELFDEMKEKSVP-ANVTTFNALLKGLRDKNMPEKAFELMD 552



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 111/250 (44%), Gaps = 47/250 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKRMEEAW 158
           P    Y  L+  LCK  ++ +ALRV+D M+     +    +T + ++  L +  R++EA 
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL 229

Query: 159 GLMEV-MKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
             +E  M  +    P+   YN L+ A+C  GN++    +++KME E +  +  T + +V 
Sbjct: 230 AFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVG 289

Query: 217 GACRAGRVEEAFVLLR--RMV---DDGQSVLYSTYAHVMGALLRLGYYAQAVK------- 264
           G CRAGR   A    R  R V     G +V YST   ++GALL       A++       
Sbjct: 290 GLCRAGRTGAALEFFREKRTVWPEGKGNAVTYST---LVGALLHTNNVGMAMELFHEKMS 346

Query: 265 ----------FVMVCG----GR--------------DIKLDTELFGSLGSKLIGLERFNE 296
                     F M+ G    GR                KLDT+ +  L +     +R +E
Sbjct: 347 EGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHE 406

Query: 297 ANFILKEMNK 306
           A  +L+EM +
Sbjct: 407 AYELLQEMKE 416



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 2/150 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L++ +    D   V  LL K   D C  +  TF  + +    +  + +  R 
Sbjct: 421 PDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRI 480

Query: 93  LARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  +D+    P    Y+TLI  LCK   +D A+ + D M E     +  TF+ +L  L  
Sbjct: 481 LRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRD 540

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
               E+A+ LM+ M+E R  PD    + L+
Sbjct: 541 KNMPEKAFELMDQMREERCFPDYVTVDVLM 570



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+   CK         ++  M + G   S ITF  ++    +  +++EA  +
Sbjct: 421 PDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRI 480

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  + P+   YN L+   C +G++     +  +M+E+ + A+  T++AL+ G   
Sbjct: 481 LRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRD 540

Query: 221 AGRVEEAFVLLRRM 234
               E+AF L+ +M
Sbjct: 541 KNMPEKAFELMDQM 554



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TL+   CK+ KIDEALR++  M E G   + + ++ ++  L +   ++ A  L
Sbjct: 456 PSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIEL 515

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            + MKE  V  ++T +N LL     K        ++ +M EE+   D  T D L+
Sbjct: 516 FDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLM 570



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 93/217 (42%), Gaps = 11/217 (5%)

Query: 97  DKGFPRK-SAYDTLIGRLCKLKKIDEALRVV----DIMAEGGFGLSAITFHPILSVLTRG 151
           ++G P+     +T++G LC+  +   AL        +  EG    +A+T+  ++  L   
Sbjct: 274 NEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKG--NAVTYSTLVGALLHT 331

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  L         SPD   Y  +++     G L     +   M+E     D + Y
Sbjct: 332 NNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAY 391

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVC 269
           + L+ G CR  R+ EA+ LL+ M + G      TY  ++    + G +A   + +  M+ 
Sbjct: 392 NILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMID 451

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            G    + T  FG+L      + + +EA  IL+ M++
Sbjct: 452 DGCQPSVIT--FGTLVHGYCKVGKIDEALRILRSMDE 486


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 109/214 (50%), Gaps = 7/214 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y+TL+   C+  ++D A RVV +M  EG    + +TF+ +++ L +  RME A  
Sbjct: 185 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK 244

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    ++PD+ +YN LL+ YC  G L  +  V  +M +  L  D  T+ +L+   C
Sbjct: 245 VFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATC 304

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ---AVKFVMVCGGRDIKL 276
           +AG +E+A  L+ +M + G  +   T+  ++    + G+      AV+ +  CG   I+ 
Sbjct: 305 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG---IQP 361

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               + +L +    L R + A  +++EM  + +K
Sbjct: 362 SVVCYNALINGYCKLGRMDLARELIREMEAKRVK 395



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 108/225 (48%), Gaps = 17/225 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
           +P    ++ +VN       +E  R + ++  R+       ++N + +          SL+
Sbjct: 220 KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLA 279

Query: 85  VLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           V S++ +      +G  P    + +LI   CK   +++A+ +V  M E G  ++ +TF  
Sbjct: 280 VFSEMTQ------RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 333

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   +++A   +E M++  + P +  YN L+  YC  G +     ++++ME ++
Sbjct: 334 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 393

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
           +  D  TY  ++ G C+ G ++ AF L ++M+  G    ++ YS+
Sbjct: 394 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 438



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  LI   CK   +D+AL  V+ M + G   S + ++ +++   +  RM+ A  L+  M+
Sbjct: 331 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 390

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
             RV PD+  Y+ +++ YC  GNL +   + +KM ++ +  DA TY +L+ G C   R+ 
Sbjct: 391 AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLN 450

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +A  L   M+  G      TY  ++    + G   +A+  
Sbjct: 451 DACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 490



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 2/212 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ ++  L     +  A R +  M   G   +  T++ ++  L    R+EEA G+
Sbjct: 116 PSVPAYNAVLLALSD-ASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGAC 219
           +  M+    +P+   YN L+ A+C  G L     V+  M EE     +  T++++V G C
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLC 234

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +AGR+E A  +   MV +G +    +Y  ++    ++G   +++        R +  D  
Sbjct: 235 KAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVV 294

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            F SL           +A  ++ +M +R L+M
Sbjct: 295 TFTSLIHATCKAGNLEQAVALVAQMRERGLRM 326



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 88  DLCRTLAR---LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           DL R L R     +  P    Y T+I   CK+  +D A ++   M + G    AIT+  +
Sbjct: 380 DLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSL 439

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L   KR+ +A  L E M ++ V PD   Y  L+  +C +GN+     +  +M  + +
Sbjct: 440 IRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 499

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRM 234
             D  TY  L+ G  ++ R +EA  LL ++
Sbjct: 500 LPDVVTYSVLINGLSKSARTKEAHRLLFKL 529



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 7/242 (2%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTF 73
           +S+ V    T+ G  PD  T   +  L++A     +LE    L+ + R R    N   TF
Sbjct: 276 ESLAVFSEMTQRGLVPDVVT---FTSLIHATCKAGNLEQAVALVAQMRERGLRMNEV-TF 331

Query: 74  NFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
             + +       L D    +  + K G  P    Y+ LI   CKL ++D A  ++  M  
Sbjct: 332 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 391

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
                  +T+  I+S   +   ++ A+ L + M +  V PD   Y+ L+   C +  L  
Sbjct: 392 KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLND 451

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              + + M +  +  D  TY  L+ G C+ G VE+A  L   M+  G      TY+ ++ 
Sbjct: 452 ACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLIN 511

Query: 252 AL 253
            L
Sbjct: 512 GL 513



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 15/177 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y TLI   CK   +++AL + D M   G     +T+  +++ L++  R +EA  L
Sbjct: 466 PDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 525

Query: 161 MEVMKEIRVSPDLTAYNYL---------------LTAYCFKGNLTATSGVLKKMEEEKLG 205
           +  +      PD   Y+ L               L  +C KG +     V + M +    
Sbjct: 526 LFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWK 585

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            D   Y  L+ G CR G V +A    ++M+  G S   ++   ++  L   G   +A
Sbjct: 586 LDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 642



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 2/205 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +D LI     L +   A   +   A  G+  S   ++ +L  L+    +  A   +  M 
Sbjct: 86  FDALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLLALSDAS-LPSARRFLSSML 144

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V+P++  YN L+ A C +G L    GV+  M       +A TY+ LV   CRAG ++
Sbjct: 145 RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELD 204

Query: 226 EAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            A  ++  M ++G +     T+  ++  L + G    A K         +  D   + +L
Sbjct: 205 GAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTL 264

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            S    +   +E+  +  EM +R L
Sbjct: 265 LSGYCKVGCLHESLAVFSEMTQRGL 289


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 4/210 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I   CKL+KI EA +++ +MA  G   + I+++ +++ L R  +M+E   
Sbjct: 235 LPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSE 294

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++E M + R  PD   +N L+  YC  GN      +  +M +  L  +  TY  L+   C
Sbjct: 295 ILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMC 354

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLD 277
           +AG +  A   L +M D G      TY  ++    + G+  QA + +  MV  G    + 
Sbjct: 355 KAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTII 414

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
           T  + +L +    L R  +A+ +L+EM +R
Sbjct: 415 T--YNALINGHCILGRMEDASGLLQEMIER 442



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 79/155 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  +CK   ++ A+  +D M + G   +  T+  ++   ++   +++A+ +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M+ M E   +P +  YN L+  +C  G +   SG+L++M E     D  +Y  ++ G CR
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              +E+AF L   MV  G S   +TY+ ++  L +
Sbjct: 461 NQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 97/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C    ++  L     M   G   + +T++ I+    + +++ EA+ L
Sbjct: 201 PNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKL 260

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M    ++P+L +YN ++   C +G +  TS +L++M + +   D  T++ L+ G C 
Sbjct: 261 LRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCN 320

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G   +A VL   MV +G S    TY  ++ ++ + G   +A++F+     R +  +   
Sbjct: 321 VGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRT 380

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L           +A  I+KEM
Sbjct: 381 YTTLIDGFSQQGFLKQAYQIMKEM 404



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR-MEEAWGLME 162
           + +D ++    ++  I++AL +V++    GF    ++++ IL  + R K+ ++ A G+ +
Sbjct: 133 AVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFK 192

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M E  VSP++  YN L+  +C  GNL        +ME      +  TY+ ++   C+  
Sbjct: 193 EMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLR 252

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           ++ EAF LLR M   G +    +Y  V+  L R G   +  + +     R    D   F 
Sbjct: 253 KIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFN 312

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDL 309
           +L +    +  F++A  +  EM K  L
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGL 339



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++TLI   C +    +AL +   M + G   + +T+  +++ + +   +  A   
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++  + P+   Y  L+  +  +G L     ++K+M E        TY+AL+ G C 
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+E+A  LL+ M++ G      +Y+ ++    R     +A +  +    + I  D   
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL   L    R  E   + +EM
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEM 509



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 94/206 (45%), Gaps = 2/206 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
            P    Y  L++    +  L+    ++ +   +    T  T+N + N    L  + D   
Sbjct: 375 HPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASG 434

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  + ++GF P   +Y T+I   C+ +++++A ++   M   G      T+  ++  L 
Sbjct: 435 LLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC 494

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + +R+ E   L + M  + + PD   Y  L+ AYC +G+L     +  +M ++    D  
Sbjct: 495 KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIV 554

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMV 235
           TY+ L+ G  +  R +EA  LL +++
Sbjct: 555 TYNVLINGFNKQSRTKEAKRLLLKLL 580



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 7/186 (3%)

Query: 74  NFITNTE--NSLSVLSDLCRTLARLDKG-----FPRKSAYDTLIGRLCKLKKIDEALRVV 126
           N +T T   NS+    +L R +  LD+       P    Y TLI    +   + +A +++
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIM 401

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M E GF  + IT++ +++      RME+A GL++ M E    PD+ +Y+ +++ +C  
Sbjct: 402 KEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRN 461

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             L     +  +M  + +  D  TY +L+ G C+  R+ E   L + M+  G      TY
Sbjct: 462 QELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTY 521

Query: 247 AHVMGA 252
             ++ A
Sbjct: 522 TSLINA 527



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 15/153 (9%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +LI   C    +D+ALR+ D M + GF    +T++ +++   +  R +EA  L
Sbjct: 516 PDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRL 575

Query: 161 MEVMKEIRVSPDLTAYNYL---------------LTAYCFKGNLTATSGVLKKMEEEKLG 205
           +  +      P+   YN L               +  +C KG +     VL+ M ++   
Sbjct: 576 LLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYK 635

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            +   Y+ ++ G  + G +E+A+ L + M+  G
Sbjct: 636 LNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG 668



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 87/215 (40%), Gaps = 28/215 (13%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEA 122
           FI +  +  +++S  CR    L+K F            P  + Y +LI  LCK +++ E 
Sbjct: 444 FIPDVVSYSTIISGFCRN-QELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEV 502

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
             +   M   G     +T+  +++       +++A  L + M +   SPD+  YN L+  
Sbjct: 503 CDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLING 562

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYD---------------ALVLGACRAGRVEEA 227
           +  +        +L K+  E+   +  TY+               AL+ G C  G + EA
Sbjct: 563 FNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEA 622

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             +L  M+  G  +    Y  ++    ++G   +A
Sbjct: 623 DRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKA 657


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 6/275 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P++  Y+ +++       L+    L        C  +  TFN + +       + +  R 
Sbjct: 218 PSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRL 277

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L R+  D   P    Y TLI  LC + ++D+A  +++ M +     + +T + ++  L +
Sbjct: 278 LKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCK 337

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R++EA  +++ M     SPD+  YN L+  +C  G       +L  M    L  +  T
Sbjct: 338 AGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 397

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MV 268
           Y ALV G C+A R+ EA  +  +M   G +    TY  ++      G     +K    MV
Sbjct: 398 YTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV 457

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
           C G  I  D  ++G+L ++L    R   A  IL+E
Sbjct: 458 CAG--ISPDHVVYGTLAAELCKSGRSARALEILRE 490



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 3/153 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I   CK   ++EA  ++  M E G     +T++ ++  L +  R+EEA  L
Sbjct: 78  PSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLL 137

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+ +  +P+  ++N ++   C +  +     V  +ME   +  D+ +Y  L+ G  +
Sbjct: 138 FNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAK 197

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAHVM 250
           AG++ EA+ L RRM+D G    +V Y+   H M
Sbjct: 198 AGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGM 230



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 111/246 (45%), Gaps = 25/246 (10%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           +++S LC ++AR+D               P     +TLI  LCK  +I EA  V+D M  
Sbjct: 295 TLISGLC-SIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T++ ++    R  + E A  L+  M    ++P++  Y  L++  C    L  
Sbjct: 354 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 413

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
             GV  +M+      +  TY AL+LG C AG+V+    L   MV  G S  +  Y  +  
Sbjct: 414 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAA 473

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            L + G  A+A++ +    GR+         SL S+  G E +  A   L +  K ++ +
Sbjct: 474 ELCKSGRSARALEILRE--GRE---------SLRSEAWGDEVYRFAVDGLLDAGKMEMAL 522

Query: 312 GFKLRD 317
           GF +RD
Sbjct: 523 GF-VRD 527



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 1/210 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P    Y+ +I  +C    +DEAL +   M   G   S  TF+ ++    +  +M
Sbjct: 212 LDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKM 271

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA+ L++ M +    PD+  Y+ L++  C    +     +L+ M + +      T + L
Sbjct: 272 DEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTL 331

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+AGR++EA  +L  MV  GQS    TY  ++    R G   +A + +     R +
Sbjct: 332 IHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGL 391

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +   + +L S L    R  EA  +  +M
Sbjct: 392 APNVVTYTALVSGLCKANRLPEACGVFAQM 421



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 118/284 (41%), Gaps = 22/284 (7%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   Y+ +++A+     LE    L+ K   D       T+N         +V+  LC++
Sbjct: 78  PSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN---------TVMDGLCKS 128

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             R+++              P + +++T+I  LC+  KID+A +V   M        + +
Sbjct: 129 -GRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWS 187

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  ++  L +  ++ EA+ L   M +  ++P    YN ++   C    L     + K M 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            +       T++ L+   C+ G+++EAF LL+RM DDG      TY+ ++  L  +    
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            A   +     R  K       +L   L    R  EA  +L  M
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 89/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  LI  L K  K+++A  +   +   G   S + +  ++  L      ++A  L
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      P    YN ++ A C +G L     ++KKM E+    D  TY+ ++ G C+
Sbjct: 68  FADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GRVEEA +L   M   G +    ++  ++  L +     QA +       RDI  D+  
Sbjct: 128 SGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWS 187

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +G L   L    + NEA  + + M
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFRRM 211


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 6/206 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           PT+  Y+ L++   ++ DL       ++  R     T +T+N + +    E  +     +
Sbjct: 339 PTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGM 398

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            + +   D G  P    Y+ LI   C+     +A  + D M   G   + +T+  ++ VL
Sbjct: 399 IKDMG--DSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVL 456

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           ++  RM+ A  L E +     SPDL  +N L+  +C  GNL     +LK+M++  +  D 
Sbjct: 457 SKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDE 516

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRM 234
            TY+ L+ G CR G+VEEA  LL+ M
Sbjct: 517 VTYNTLMQGRCREGKVEEARELLKEM 542



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 120/296 (40%), Gaps = 39/296 (13%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDLCRTLARLDKGFPRKSAYDT 108
           ETV  L  +  R    +T  TFN + N    E  L    D   ++  L    P    Y+T
Sbjct: 218 ETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVK-PNVVTYNT 276

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +I   C   +++ A  V+DIM   G    + T+  ++S + +G ++EEA G++E MKEI 
Sbjct: 277 VIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIG 336

Query: 169 VSPDLTAYNYLLTAYCFKGNLT-----------------------------------ATS 193
           + P    YN L+  YC KG+L                                       
Sbjct: 337 LLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEAD 396

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           G++K M +  +  D+ TY+ L+ G CR G  ++AF L   M+  G      TY  ++  L
Sbjct: 397 GMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVL 456

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +      A              D  +F +L          + A  +LKEM+KR++
Sbjct: 457 SKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNI 512



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 2/178 (1%)

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           V  +L  T  RL  G      +D LI   C+LK+ D+A    D+M E G      TF+ +
Sbjct: 150 VFHELAITRDRL--GTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAM 207

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           LS+  +  + E  W L   M  +++   +  +N ++   C +G L      +  ME   +
Sbjct: 208 LSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGV 267

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             +  TY+ ++ G C  GRVE A ++L  M + G      TY  ++  + + G   +A
Sbjct: 268 KPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEA 325



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 26  SGAFPDEPTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           SG  PD  T   Y+ L+N     G+ +    +   +  +       T  +  ++ +  N 
Sbjct: 405 SGIVPDSIT---YNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNR 461

Query: 83  LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           +    DL   + R +   P    ++ LI   C    +D A  ++  M +       +T++
Sbjct: 462 MKAADDLFEKIIR-EGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYN 520

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    R  ++EEA  L++ MK   + PD  +YN L++ Y  +G++     +  +M   
Sbjct: 521 TLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSI 580

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
                  TY+AL+ G C+  + + A  LL+ MV  G +   STY
Sbjct: 581 GFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTY 624



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 2/198 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +PT   Y  L+        ++    L  K  R+        FN + +   +   L     
Sbjct: 443 QPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFA 502

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  +DK    P +  Y+TL+   C+  K++EA  ++  M   G     I+++ ++S  +
Sbjct: 503 LLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYS 562

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   + +A+ + + M  I  +P L  YN L+   C          +LK+M  + +  D  
Sbjct: 563 KRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDS 622

Query: 210 TYDALVLGACRAGRVEEA 227
           TY +L+ G  +     EA
Sbjct: 623 TYFSLIEGIGKVDDSSEA 640


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 111/227 (48%), Gaps = 1/227 (0%)

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L D C+    +    P    Y T++   C   +++ A++++D MA  G   +A  +  ++
Sbjct: 271 LKDACQHFDEMSSP-PDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVI 329

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           ++L    ++ +A  ++E M    V+ D   +  +++ +C KG+L A   + ++M++  L 
Sbjct: 330 ALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLA 389

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           AD  T+ AL+ G CRAG ++EA  +L+ MVD G  V   TY  ++    + G   +A + 
Sbjct: 390 ADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRV 449

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
                GR +  +   + +L   L        AN +L EM  + L++ 
Sbjct: 450 HNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELN 496



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 6/187 (3%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N + N       L    R +  ++    R     Y TLI  LCK  + D A  ++  M
Sbjct: 499 TYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEM 558

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            + G   S  T++ +++      R+E    L+E M E  V P++  YN L+  YC   N+
Sbjct: 559 LDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNM 618

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            +T+ + K M  +++  +  TY+ L+ G C+A  ++EA    + M++ G  +  S+Y+  
Sbjct: 619 KSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYS-- 676

Query: 250 MGALLRL 256
             AL+RL
Sbjct: 677 --ALIRL 681



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 137/327 (41%), Gaps = 23/327 (7%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPD----------EPTSAYYDDLVNAAGHERD 50
           ++L R+LP K +   ++L+ ++   +G   D           P    Y  +V+      +
Sbjct: 244 IALFRELPDKNVCSHNILL-KALLSAGRLKDACQHFDEMSSPPDVVTYGTMVHGYCVRGE 302

Query: 51  LETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSVLSDLCRTLARLDKGFPRK 103
           LE    LL++ A     + A  +  +           ++L VL D+      LD      
Sbjct: 303 LENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDA----- 357

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
             + T+I   C    +  A R+ + M + G     +T   +++ L R   ++EA  +++ 
Sbjct: 358 VVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQE 417

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M +  +  D+  Y  L+  YC +GN+     V  +M   ++  +  TY AL  G C+ G 
Sbjct: 418 MVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGD 477

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           V  A  LL  M + G  +   TY  ++  L + G   QA++ +        + D   + +
Sbjct: 478 VRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTT 537

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           L   L     F+ A+ +L+EM  + +K
Sbjct: 538 LIDTLCKSGEFDRAHNMLQEMLDKGIK 564



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 91/239 (38%), Gaps = 35/239 (14%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  LI  LC+  ++ EA RV+  M + G  +  +T+  ++    +   M EA+ +   M 
Sbjct: 395 HTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMV 454

Query: 166 EIRVSPDLTAY-----------------------------------NYLLTAYCFKGNLT 190
             RV+P++  Y                                   N L+   C  GNL 
Sbjct: 455 GRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLE 514

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               ++ +ME      D  TY  L+   C++G  + A  +L+ M+D G     +TY  +M
Sbjct: 515 QAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLM 574

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                 G      K +     ++++ +   + SL  +    +       I K M+ +++
Sbjct: 575 NGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEV 633



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 92/210 (43%), Gaps = 19/210 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF- 100
           + AAGH  D+ T   L++   +   F+ A+            ++L ++      LDKG  
Sbjct: 523 MEAAGHRTDVYTYTTLIDTLCKSGEFDRAH------------NMLQEM------LDKGIK 564

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ L+   C   +++   ++++ M E     + +T++ ++      K M+    +
Sbjct: 565 PSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEI 624

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    V+P+   YN L+  +C   N+       ++M E+ L   A +Y AL+    +
Sbjct: 625 YKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNK 684

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
             +  EA V   +M ++G +     Y+  M
Sbjct: 685 KKKFSEARVFFDKMRNEGLTAEPDVYSFYM 714



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 46/92 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P ++ Y+ LI   CK + + EAL     M E G  L+A ++  ++ +L + K+  EA   
Sbjct: 635 PNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVF 694

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
            + M+   ++ +   Y++ +     + NL +T
Sbjct: 695 FDKMRNEGLTAEPDVYSFYMDISFNEDNLEST 726


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 99/215 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y TLI   C   K D++  + D M + G     +TF  ++  L +  ++ EA  
Sbjct: 269 IPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKK 328

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+EVM +  + P+L  YN L+  +C  G+L +   +   M  + L  D  +Y  L+ G C
Sbjct: 329 LLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYC 388

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +  +V+EA  L   M+  G+S   +TY  ++  L + G    A K   V     +  +++
Sbjct: 389 KTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQ 448

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
           ++G     L   +   EA  +  E+   + K+  +
Sbjct: 449 IYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIE 483



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y   +  LCK   + EA+ + + +    F L+   +  ++  L +  ++E AW L E + 
Sbjct: 450 YGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLS 509

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  + PD+  YN ++  +C  G +   + + +KMEE     D   Y+ L+ G C   ++E
Sbjct: 510 QEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLE 569

Query: 226 EAFVLLRRMVD 236
           E   LL +MV 
Sbjct: 570 EVIKLLHKMVQ 580



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 25/215 (11%)

Query: 86  LSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG--FGLSA--- 138
           +S+  R   R+ K    P    Y TLI  LC+   ++ AL++   M      +G++    
Sbjct: 177 ISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPG 236

Query: 139 -ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            IT+  I+  L +  R +EA  L E MK   + PD+ +Y+ L+  +C  G    +  +  
Sbjct: 237 VITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFD 296

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M ++ +  D  T+  L+   C+ G+V EA  LL  M+  G      TY  ++     +G
Sbjct: 297 EMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVG 356

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
                          D+    ELF S+ SK  GLE
Sbjct: 357 ---------------DLNSARELFLSMPSK--GLE 374



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 1/171 (0%)

Query: 93  LARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L+   KG  P + +Y TLI   CK  K+ EA+ + + M + G   +  T+  +L  L + 
Sbjct: 366 LSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQK 425

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            ++ +A  L  VMK   VS +   Y   L   C    L     +  +++      +   Y
Sbjct: 426 GKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENY 485

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             L+ G C+AG++E A+ L  ++  +G      TY  ++    ++G    A
Sbjct: 486 SCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNA 536



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 66/138 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y TL+  L +  K+ +A ++  +M   G   ++  +   L  L +   + EA  L
Sbjct: 410 PNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMEL 469

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +K      ++  Y+ L+   C  G L     + +K+ +E L  D  TY+ ++ G C+
Sbjct: 470 FNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCK 529

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G+V+ A +L  +M ++G
Sbjct: 530 VGQVDNANILFEKMEENG 547



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L +G+ P    Y TLI  LC   +I EA R+   M + G   +A+T+  ++  L +   +
Sbjct: 153 LRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNV 212

Query: 155 EEAWGLMEVMKE------IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
             A  L + M        +   P +  Y+ ++   C  G       + ++M+ + +  D 
Sbjct: 213 NIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDV 272

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            +Y  L+ G C AG+ +++  L   MVD G      T++ ++  L + G   +A K + V
Sbjct: 273 ISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEV 332

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              R I  +   + SL      +   N A  +   M  + L+
Sbjct: 333 MIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLE 374



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 107/264 (40%), Gaps = 26/264 (9%)

Query: 7   LPTKFLIPQ-------SVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN 59
           +P+K L+P        S L T S T   + P + +S ++ + +  A   R+  +  + L+
Sbjct: 1   MPSKTLLPSPSFKPNLSPLSTHSSTIPSSIP-QTSSTHHPNPILPAAFNREEISFHHPLS 59

Query: 60  KRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKI 119
              R+C             T N  ++ +     L       P  S+++ L+G L K+   
Sbjct: 60  LFLRNC------------KTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHY 107

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            +   + + M   G      T   + + L    R+ EA   M  +      P++  Y  L
Sbjct: 108 SQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTL 167

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C +  ++  + +  +M++     +A TY  L+ G C+ G V  A  L + M++D  
Sbjct: 168 IKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDAS 227

Query: 240 SVLYS------TYAHVMGALLRLG 257
               +      TY+ ++  L ++G
Sbjct: 228 QYGVNCKPGVITYSIIIDGLCKVG 251



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 24/167 (14%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126
           FN   ++NF  N EN                        Y  LI  LCK  K++ A  + 
Sbjct: 470 FNELKSYNFKLNIEN------------------------YSCLIDGLCKAGKLETAWELF 505

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           + +++ G     +T++ ++    +  +++ A  L E M+E   +PD+ AYN LL  +C  
Sbjct: 506 EKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEG 565

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
             L     +L KM ++ +  +A +   +V   C+  + ++   LL +
Sbjct: 566 NKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPK 612


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 28/296 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  ++N    +  L+    LL+      C     T++ +         +  LC+ 
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVL---------VEGLCKA 184

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             R DKGF            P    Y+TL+  LCK +++DEAL +V +M   G   + +T
Sbjct: 185 -GRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++ +  R K+++ A+ L++VM E    PD+  YN ++   C    L     +LK+M 
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV 303

Query: 201 EEKLGADARTYDALVLGACRAGRV------EEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
             +   D  TY  ++ G C+  RV      E A  +L  M   G      TYA V+  L 
Sbjct: 304 AARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLC 363

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           R     QA+  +      ++  D   F  +   L      + A  I   M++R+ K
Sbjct: 364 RARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECK 419



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 136/324 (41%), Gaps = 46/324 (14%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI--------------- 76
           +P    Y+ L+N     R L+    L+    R  C+ T  T+N +               
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262

Query: 77  -----------TNTENSLSVLSDLCRTLARLD------------KGFPRKSAYDTLIGRL 113
                       +  N  +V++ LCR  ARLD            +  P    Y T+I  L
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAGLCRD-ARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321

Query: 114 CKLKKIDE------ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           CK  ++D       A  ++++M + G   +A T+  ++  L R ++ ++A  L+  M + 
Sbjct: 322 CKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDS 381

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            V PDL++++ ++ + C   +L A   +   M E +   +   Y AL+ G  + G V++A
Sbjct: 382 EVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKA 441

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
             +   MV+  +  + +TY  V+  L  +G   +AV+ V     ++   D   +G+L   
Sbjct: 442 VRVFELMVESFRPGV-ATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRG 500

Query: 288 LIGLERFNEANFILKEMNKRDLKM 311
           L  +    EA  + + +  +   M
Sbjct: 501 LCRVSCVEEAYELFQAVEAKGFAM 524



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 92/206 (44%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           L R ++  P +  Y +LI  LCK  K+D+A  ++D M + G        + ++  L +  
Sbjct: 20  LFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAG 79

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME-EEKLGADARTY 211
           R  +A G  + +   + +PD+  +N L+ A    G +     + + M    +   +  TY
Sbjct: 80  RFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTY 139

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
             ++ G C+ G+++ A  LL  M + G      TY+ ++  L + G   +    +     
Sbjct: 140 TTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTR 199

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
           R  + D  ++ +L + L    R +EA
Sbjct: 200 RGFQPDVIMYNTLLNGLCKSRRLDEA 225



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 1/155 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S++  +IG LCK   +D A ++  +M+E     + + +  ++  L++G  +++A  +
Sbjct: 385 PDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRV 444

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E+M E    P +  YN +L   C  G +     +++ M  ++   D  +Y AL+ G CR
Sbjct: 445 FELMVE-SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              VEEA+ L + +   G ++    Y  ++  L +
Sbjct: 504 VSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCK 538



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  LI  L K  ++D+A+RV ++M E  F     T++ +L  L    R+EEA  +
Sbjct: 420 PNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRM 478

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M      PD  +Y  L+   C    +     + + +E +    +   Y+ LV   C+
Sbjct: 479 VEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCK 538

Query: 221 AGRVEEAFVLLRRMVDDG 238
             R+ +A  +  ++++ G
Sbjct: 539 KKRLSDAHGVANKLIEAG 556



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%)

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           EE+   +  TY +L+ G C+AG++++A+ LL  M D G     + +  V+  L + G + 
Sbjct: 23  EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFG 82

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
            A+ +     G     D   F  L   L+   R  EA  I + M+
Sbjct: 83  DALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMH 127


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 109/214 (50%), Gaps = 7/214 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y+TL+   C+  ++D A RVV +M  EG    + +TF+ +++ L +  RME A  
Sbjct: 43  PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK 102

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    ++PD+ +YN LL+ YC  G L  +  V  +M +  L  D  T+ +L+   C
Sbjct: 103 VFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATC 162

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ---AVKFVMVCGGRDIKL 276
           +AG +E+A  L+ +M + G  +   T+  ++    + G+      AV+ +  CG   I+ 
Sbjct: 163 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG---IQP 219

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               + +L +    L R + A  +++EM  + +K
Sbjct: 220 SVVCYNALINGYCKLGRMDLARELIREMEAKRVK 253



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 1/207 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LC   +++EA+ VV  M   G   +A+T++ +++   R   ++ A  +
Sbjct: 8   PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 67

Query: 161 MEVMKEI-RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + +M+E     P+L  +N ++   C  G +     V  +M  E L  D  +Y+ L+ G C
Sbjct: 68  VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC 127

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G + E+  +   M   G      T+  ++ A  + G   QAV  V     R ++++  
Sbjct: 128 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEV 187

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            F +L          ++A   ++EM K
Sbjct: 188 TFTALIDGFCKKGFLDDALLAVEEMRK 214



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 108/225 (48%), Gaps = 17/225 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT-------ENSLS 84
           +P    ++ +VN       +E  R + ++  R+       ++N + +          SL+
Sbjct: 78  KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLA 137

Query: 85  VLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           V S++ +      +G  P    + +LI   CK   +++A+ +V  M E G  ++ +TF  
Sbjct: 138 VFSEMTQ------RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 191

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   +++A   +E M++  + P +  YN L+  YC  G +     ++++ME ++
Sbjct: 192 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 251

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
           +  D  TY  ++ G C+ G ++ AF L ++M+  G    ++ YS+
Sbjct: 252 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 296



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  LI   CK   +D+AL  V+ M + G   S + ++ +++   +  RM+ A  L+  M+
Sbjct: 189 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 248

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
             RV PD+  Y+ +++ YC  GNL +   + +KM ++ +  DA TY +L+ G C   R+ 
Sbjct: 249 AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLN 308

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +A  L   M+  G      TY  ++    + G   +A+  
Sbjct: 309 DACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 348



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 1/184 (0%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   +  T++ ++  L    R+EEA G++  M+    +P+   YN L+ A+C  G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 189 LTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           L     V+  M EE     +  T++++V G C+AGR+E A  +   MV +G +    +Y 
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++    ++G   +++        R +  D   F SL           +A  ++ +M +R
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 308 DLKM 311
            L+M
Sbjct: 181 GLRM 184



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 88  DLCRTLAR---LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           DL R L R     +  P    Y T+I   CK+  +D A ++   M + G    AIT+  +
Sbjct: 238 DLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSL 297

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L   KR+ +A  L E M ++ V PD   Y  L+  +C +GN+     +  +M  + +
Sbjct: 298 IRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 357

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRM 234
             D  TY  L+ G  ++ R +EA  LL ++
Sbjct: 358 LPDVVTYSVLINGLSKSARTKEAHRLLFKL 387



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 7/242 (2%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTF 73
           +S+ V    T+ G  PD  T   +  L++A     +LE    L+ + R R    N   TF
Sbjct: 134 ESLAVFSEMTQRGLVPDVVT---FTSLIHATCKAGNLEQAVALVAQMRERGLRMNEV-TF 189

Query: 74  NFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
             + +       L D    +  + K G  P    Y+ LI   CKL ++D A  ++  M  
Sbjct: 190 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 249

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
                  +T+  I+S   +   ++ A+ L + M +  V PD   Y+ L+   C +  L  
Sbjct: 250 KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLND 309

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              + + M +  +  D  TY  L+ G C+ G VE+A  L   M+  G      TY+ ++ 
Sbjct: 310 ACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLIN 369

Query: 252 AL 253
            L
Sbjct: 370 GL 371



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 15/177 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y TLI   CK   +++AL + D M   G     +T+  +++ L++  R +EA  L
Sbjct: 324 PDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 383

Query: 161 MEVMKEIRVSPDLTAYNYL---------------LTAYCFKGNLTATSGVLKKMEEEKLG 205
           +  +      PD   Y+ L               L  +C KG +     V + M +    
Sbjct: 384 LFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWK 443

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            D   Y  L+ G CR G V +A    ++M+  G S   ++   ++  L   G   +A
Sbjct: 444 LDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 500


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 28/296 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  ++N    +  L+    LL+      C     T++ +         +  LC+ 
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVL---------VEGLCKA 184

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             R DKGF            P    Y+TL+  LCK +++DEAL +V +M   G   + +T
Sbjct: 185 -GRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++ +  R K+++ A+ L++VM E    PD+  YN ++   C    L     +LK+M 
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV 303

Query: 201 EEKLGADARTYDALVLGACRAGRV------EEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
             +   D  TY  ++ G C+  RV      E A  +L  M   G      TYA V+  L 
Sbjct: 304 AARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLC 363

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           R     QA+  +      ++  D   F  +   L      + A  I   M++R+ K
Sbjct: 364 RARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECK 419



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 136/324 (41%), Gaps = 46/324 (14%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI--------------- 76
           +P    Y+ L+N     R L+    L+    R  C+ T  T+N +               
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262

Query: 77  -----------TNTENSLSVLSDLCRTLARLD------------KGFPRKSAYDTLIGRL 113
                       +  N  +V++ LCR  ARLD            +  P    Y T+I  L
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAGLCRD-ARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321

Query: 114 CKLKKIDE------ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           CK  ++D       A  ++++M + G   +A T+  ++  L R ++ ++A  L+  M + 
Sbjct: 322 CKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDS 381

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            V PDL++++ ++ + C   +L A   +   M E +   +   Y AL+ G  + G V++A
Sbjct: 382 EVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKA 441

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
             +   MV+  +  + +TY  V+  L  +G   +AV+ V     ++   D   +G+L   
Sbjct: 442 VRVFELMVESFRPGV-ATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRG 500

Query: 288 LIGLERFNEANFILKEMNKRDLKM 311
           L  +    EA  + + +  +   M
Sbjct: 501 LCRVSCVEEAYELFQAVEAKGFAM 524



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 92/206 (44%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           L R ++  P +  Y +LI  LCK  K+D+A  ++D M + G        + ++  L +  
Sbjct: 20  LFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAG 79

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME-EEKLGADARTY 211
           R  +A G  + +   + +PD+  +N L+ A    G +     + + M    +   +  TY
Sbjct: 80  RFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTY 139

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
             ++ G C+ G+++ A  LL  M + G      TY+ ++  L + G   +    +     
Sbjct: 140 TTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTR 199

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
           R  + D  ++ +L + L    R +EA
Sbjct: 200 RGFQPDVIMYNTLLNGLCKSRRLDEA 225



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 1/155 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S++  +IG LCK   +D A ++  +M+E     + + +  ++  L++G  +++A  +
Sbjct: 385 PDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRV 444

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E+M E    P +  YN +L   C  G +     +++ M  ++   D  +Y AL+ G CR
Sbjct: 445 FELMVE-SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              VEEA+ L + +   G ++    Y  ++  L +
Sbjct: 504 VSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCK 538



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  LI  L K  ++D+A+RV ++M E  F     T++ +L  L    R+EEA  +
Sbjct: 420 PNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRM 478

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M      PD  +Y  L+   C    +     + + +E +    +   Y+ LV   C+
Sbjct: 479 VEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCK 538

Query: 221 AGRVEEAFVLLRRMVDDG 238
             R+ +A  +  ++++ G
Sbjct: 539 KKRLSDAHGVANKLIEAG 556



 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%)

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           EE+   +  TY +L+ G C+AG++++A+ LL  M D G     + +  V+  L + G + 
Sbjct: 23  EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFG 82

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
            A+ +     G     D   F  L   L+   R  EA  I + M+
Sbjct: 83  DALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMH 127


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 2/236 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L+N    E  L+     LN      C     T N I  +  S     D  +
Sbjct: 279 KPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 338

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            LA +  KG  P    ++ LI  LC+   I  A+ V++ M + G   ++++++P+L  L 
Sbjct: 339 FLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALC 398

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + K+ME A   +++M      PD+  YN LLTA C  G +     +L ++  +       
Sbjct: 399 KDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLI 458

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           TY+ ++ G  + G+ ++A  LL  M   G      TY+ ++G L R G   +A+ F
Sbjct: 459 TYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAF 514



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 128/281 (45%), Gaps = 4/281 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ ++        L+    +L+++ +  C+    T+  +       S +    + 
Sbjct: 210 PDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKL 269

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL-SVLT 149
           L  + DKG  P    Y+ LI  +CK  ++DEA+R ++ M   G   + IT + IL S+ +
Sbjct: 270 LDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCS 329

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
            G+ M+    L E++++   SP +  +N L+   C KG +     VL+KM +     ++ 
Sbjct: 330 TGRWMDAEKFLAEMIRK-GCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSL 388

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           +Y+ L+   C+  ++E A   L  MV  G      TY  ++ AL + G    AV+ +   
Sbjct: 389 SYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL 448

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           G +        + ++   L  + + ++A  +L EM  + LK
Sbjct: 449 GSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLK 489



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   A  +LI  LCK  K  +A RV++I+ + G     IT++ ++S   +   +  A  
Sbjct: 142 IPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQ 201

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M    VSPD+  YN +L   C  G L     VL +  + +   D  TY  L+   C
Sbjct: 202 LLDRMS---VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATC 258

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +   V +A  LL  M D G      TY  ++  + + G   +A++F+
Sbjct: 259 KESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFL 305



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 2/212 (0%)

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLC 114
            L +  R  C  +  TFN + N      ++      L ++ +    P   +Y+ L+  LC
Sbjct: 339 FLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALC 398

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           K KK++ A+  +DIM   G     +T++ +L+ L +  +++ A  ++  +     SP L 
Sbjct: 399 KDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLI 458

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            YN ++      G       +L +M+ + L  D  TY  LV G  R G+V+EA      +
Sbjct: 459 TYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDL 518

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            + G      TY  +M  L +     +A+ F+
Sbjct: 519 EEMGVKPNAITYNSIMLGLCKARQTVRAIDFL 550



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 14/202 (6%)

Query: 79  TENSLS---VLSDLC------RTLARLD----KG-FPRKSAYDTLIGRLCKLKKIDEALR 124
           T NSLS   +L  LC      R +  LD    +G +P    Y+TL+  LCK  K+D A+ 
Sbjct: 384 TPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 443

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +++ +   G     IT++ ++  L++  + ++A  L++ MK   + PD+  Y+ L+    
Sbjct: 444 ILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLS 503

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            +G +         +EE  +  +A TY++++LG C+A +   A   L  MV  G     +
Sbjct: 504 REGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTET 563

Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
           +Y  ++  L   G   +A++ +
Sbjct: 564 SYMILIEGLAYEGLAKEALELL 585



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 130/311 (41%), Gaps = 5/311 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           ++LR L     + +++ V     +   +PD  T   Y  L+ A   E  +     LL++ 
Sbjct: 217 TILRTLCDSGKLKEAMEVLDRQMQRECYPDVIT---YTILIEATCKESGVGQAMKLLDEM 273

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKI 119
               C     T+N + N       L +  R L  +      P    ++ ++  +C   + 
Sbjct: 274 RDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRW 333

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            +A + +  M   G   S +TF+ +++ L R   +  A  ++E M +   +P+  +YN L
Sbjct: 334 MDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPL 393

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           L A C    +      L  M       D  TY+ L+   C+ G+V+ A  +L ++   G 
Sbjct: 394 LHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGC 453

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           S +  TY  V+  L ++G    A+K +    G+ +K D   + +L   L    + +EA  
Sbjct: 454 SPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIA 513

Query: 300 ILKEMNKRDLK 310
              ++ +  +K
Sbjct: 514 FFHDLEEMGVK 524



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 87/193 (45%), Gaps = 3/193 (1%)

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           RL +  +++E  + ++ M   G     I    ++  L +  +  +A  +ME++++    P
Sbjct: 119 RLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVP 178

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           D+  YN L++ YC  G + +   +L +M    +  D  TY+ ++   C +G+++EA  +L
Sbjct: 179 DVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVL 235

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
            R +         TY  ++ A  +     QA+K +     +  K D   +  L + +   
Sbjct: 236 DRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKE 295

Query: 292 ERFNEANFILKEM 304
            R +EA   L  M
Sbjct: 296 GRLDEAIRFLNHM 308


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 98/209 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P      +L+   C  K+I +A+ +VD M E G+    +TF+ ++  L    +  EA  L
Sbjct: 148 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVAL 207

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +    PDL  Y  ++   C +G++     +LKKME+ K+ AD   Y+ ++ G C+
Sbjct: 208 VDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCK 267

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +++AF L  +M   G      TY  ++  L   G ++ A + +     R I  +   
Sbjct: 268 YKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVT 327

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F +L    +   +  EA  +  EM KR +
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSI 356



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 78/163 (47%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK K+++E + +   M++ G   + +T++ ++  L +    + A  
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    V PD+  Y+ LL   C  G L     V + +++ K+  D  TY+ ++ G C
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC 511

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +AG+VE+ + L   +   G       Y  ++    R G   +A
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEA 554



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 102/245 (41%), Gaps = 5/245 (2%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           ++V +     + G  PD  T   Y  +VN      D++    LL K  +         +N
Sbjct: 203 EAVALVDQMVQRGCQPDLVT---YGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 259

Query: 75  FITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            I +       + D      +++ KG  P    Y++LI  LC   +  +A R++  M E 
Sbjct: 260 TIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIER 319

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
               + +TF  ++    +  ++ EA  L + M +  + PD+  Y+ L+  +C    L   
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             + + M  +    +  TY+ L+ G C+A RVEE   L R M   G      TY  ++  
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439

Query: 253 LLRLG 257
           L + G
Sbjct: 440 LFQAG 444



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 98/208 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI  L    K  EA+ +VD M + G     +T+  +++ L +   ++ A  L
Sbjct: 183 PDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSL 242

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++ ++  D+  YN ++   C   ++     +  KME + +  D  TY++L+   C 
Sbjct: 243 LKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCN 302

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LL  M++   +    T++ ++ A ++ G   +A K       R I  D   
Sbjct: 303 YGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 362

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + SL +     +R +EA  + + M  +D
Sbjct: 363 YSSLINGFCMHDRLDEAKHMFELMISKD 390



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 91/205 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ LI   C+  ++  AL V+  M + G+    +T   +L+     KR+ +A  L++ M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 176

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E+   PD   +N L+         +    ++ +M +     D  TY A+V G C+ G +
Sbjct: 177 VEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDI 236

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           + A  LL++M           Y  ++  L +  +   A         + I+ D   + SL
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSL 296

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            S L    R+++A+ +L  M +R +
Sbjct: 297 ISCLCNYGRWSDASRLLSNMIERKI 321



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 91/189 (48%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+D+A+ +   M +     S + F+ +LS + + K+ +    L E M+ +R+S DL +YN
Sbjct: 60  KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYN 119

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C +  L     VL KM +     D  T  +L+ G C + R+ +A  L+ +MV+ 
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 179

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G      T+  ++  L      ++AV  V     R  + D   +G++ + L      + A
Sbjct: 180 GYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLA 239

Query: 298 NFILKEMNK 306
             +LK+M K
Sbjct: 240 LSLLKKMEK 248



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 22/247 (8%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  L+N       L+  +++        CF    T+N         +++   C+
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN---------TLIKGFCK 407

Query: 92  TLARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
              R+++G                  Y+TLI  L +    D A ++   M   G     I
Sbjct: 408 A-KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +L  L +  ++E+A  + E +++ ++ PD+  YN ++   C  G +     +   +
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             + +  +   Y  ++ G CR G  EEA  L R M +DG       Y  ++ A LR G  
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDK 586

Query: 260 AQAVKFV 266
           A + + +
Sbjct: 587 AASAELI 593



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 99/234 (42%), Gaps = 2/234 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           E     Y+ +++     + ++    L NK           T+N + +   +    SD  R
Sbjct: 252 EADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASR 311

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+ +   K  P    +  LI    K  K+ EA ++ D M +        T+  +++   
Sbjct: 312 LLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 371

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              R++EA  + E+M      P++  YN L+  +C    +     + ++M +  L  +  
Sbjct: 372 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 431

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           TY+ L+ G  +AG  + A  + ++MV DG      TY+ ++  L + G   +A+
Sbjct: 432 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL 485



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 70/153 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK  K+++AL V + + +        T++ ++  + +  ++E+ W L
Sbjct: 463 PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V P++  Y  +++ +C KG       + ++M+E+    D+  Y+ L+    R
Sbjct: 523 FCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLR 582

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            G    +  L++ M   G     ST + V+  L
Sbjct: 583 DGDKAASAELIKEMRSCGFVGDASTISMVINML 615


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 109/214 (50%), Gaps = 7/214 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y+TL+   C+  ++D A RVV +M  EG    + +TF+ +++ L +  RME A  
Sbjct: 185 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK 244

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    ++PD+ +YN LL+ YC  G L  +  V  +M +  L  D  T+ +L+   C
Sbjct: 245 VFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATC 304

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ---AVKFVMVCGGRDIKL 276
           +AG +E+A  L+ +M + G  +   T+  ++    + G+      AV+ +  CG   I+ 
Sbjct: 305 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG---IQP 361

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               + +L +    L R + A  +++EM  + +K
Sbjct: 362 SVVCYNALINGYCKLGRMDLARELIREMEAKRVK 395



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 108/225 (48%), Gaps = 17/225 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
           +P    ++ +VN       +E  R + ++  R+       ++N + +          SL+
Sbjct: 220 KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLA 279

Query: 85  VLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           V S++ +      +G  P    + +LI   CK   +++A+ +V  M E G  ++ +TF  
Sbjct: 280 VFSEMTQ------RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 333

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   +++A   +E M++  + P +  YN L+  YC  G +     ++++ME ++
Sbjct: 334 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 393

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
           +  D  TY  ++ G C+ G ++ AF L ++M+  G    ++ YS+
Sbjct: 394 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 438



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  LI   CK   +D+AL  V+ M + G   S + ++ +++   +  RM+ A  L+  M+
Sbjct: 331 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 390

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
             RV PD+  Y+ +++ YC  GNL +   + +KM ++ +  DA TY +L+ G C   R+ 
Sbjct: 391 AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLN 450

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +A  L   M+  G      TY  ++    + G   +A+  
Sbjct: 451 DACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 490



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 2/212 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ ++  L     +  A R +  M   G   +  T++ ++  L    R+EEA G+
Sbjct: 116 PSVPAYNAVLLALSD-ASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGAC 219
           +  M+    +P+   YN L+ A+C  G L     V+  M EE     +  T++++V G C
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLC 234

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +AGR+E A  +   MV +G +    +Y  ++    ++G   +++        R +  D  
Sbjct: 235 KAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVV 294

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            F SL           +A  ++ +M +R L+M
Sbjct: 295 TFTSLIHATCKAGNLEQAVALVAQMRERGLRM 326



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 88  DLCRTLAR---LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           DL R L R     +  P    Y T+I   CK+  +D A ++   M + G    AIT+  +
Sbjct: 380 DLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSL 439

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L   KR+ +A  L E M ++ V PD   Y  L+  +C +GN+     +  +M  + +
Sbjct: 440 IRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 499

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRM 234
             D  TY  L+ G  ++ R +EA  LL ++
Sbjct: 500 LPDVVTYSVLINGLSKSARTKEAHRLLFKL 529



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 7/242 (2%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTF 73
           +S+ V    T+ G  PD  T   +  L++A     +LE    L+ + R R    N   TF
Sbjct: 276 ESLAVFSEMTQRGLVPDVVT---FTSLIHATCKAGNLEQAVALVAQMRERGLRMNEV-TF 331

Query: 74  NFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
             + +       L D    +  + K G  P    Y+ LI   CKL ++D A  ++  M  
Sbjct: 332 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 391

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
                  +T+  I+S   +   ++ A+ L + M +  V PD   Y+ L+   C +  L  
Sbjct: 392 KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLND 451

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              + + M +  +  D  TY  L+ G C+ G VE+A  L   M+  G      TY+ ++ 
Sbjct: 452 ACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLIN 511

Query: 252 AL 253
            L
Sbjct: 512 GL 513



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 15/177 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y TLI   CK   +++AL + D M   G     +T+  +++ L++  R +EA  L
Sbjct: 466 PDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 525

Query: 161 MEVMKEIRVSPDLTAYNYL---------------LTAYCFKGNLTATSGVLKKMEEEKLG 205
           +  +      PD   Y+ L               L  +C KG +     V + M +    
Sbjct: 526 LFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWK 585

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            D   Y  L+ G CR G V +A    ++M+  G S   ++   ++  L   G   +A
Sbjct: 586 LDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 642



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 2/205 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +D LI     L +   A   +   A  G+  S   ++ +L  L+    +  A   +  M 
Sbjct: 86  FDALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLLALSDAS-LPSARRFLSSML 144

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V+P++  YN L+ A C +G L    GV+  M       +A TY+ LV   CRAG ++
Sbjct: 145 RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELD 204

Query: 226 EAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            A  ++  M ++G +     T+  ++  L + G    A K         +  D   + +L
Sbjct: 205 GAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTL 264

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            S    +   +E+  +  EM +R L
Sbjct: 265 LSGYCKVGCLHESLAVFSEMTQRGL 289


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 6/226 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L +    + D++    LL++ +       A T+N + N       L    RT
Sbjct: 467 PNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRT 526

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +A +D     P    Y TLI  LCK  ++D A  ++  M + G   + +T++ +++    
Sbjct: 527 MADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCM 586

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R+E    L+E M E  + P+ T YN L+  YC   N+ +T+ + K M    +  +  T
Sbjct: 587 SGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENT 646

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           Y+ L+ G C+A  ++EA      M++ G  +  S+Y+    AL+RL
Sbjct: 647 YNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYS----ALIRL 688



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 100/211 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C L +++ A++++D M   G   +A  +  ++++L    R+ +A  +
Sbjct: 292 PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTV 351

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M   +V  D   Y  +L+ +C KG+L +      +M+ + L  D  TY  L+ G CR
Sbjct: 352 VEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCR 411

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG ++EA  +L+ M+     V   TY  ++    + G  A+A +       R +  +   
Sbjct: 412 AGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVT 471

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           + +L   L        AN +L EM+ + L++
Sbjct: 472 YTALSDGLCKQGDVQAANELLHEMSNKGLEL 502



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 5/224 (2%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           ++L+V+ D+      LD+     + Y T++   C    +  A R  D M   G     +T
Sbjct: 347 DALTVVEDMVHHKVILDE-----AVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVT 401

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  +++ L R   ++EA  +++ M   R+  D   Y  L+  YC +G +     V   M 
Sbjct: 402 YTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMV 461

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           +  +  +  TY AL  G C+ G V+ A  LL  M + G  +   TY  ++  L + GY  
Sbjct: 462 QRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLD 521

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           QA++ +       +K D   + +L   L      + A+ +L+EM
Sbjct: 522 QAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEM 565



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 7/232 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           EN++ +L D+      + +G  P  + Y +++  LC   ++ +AL VV+ M      L  
Sbjct: 311 ENAVKLLDDM------VARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDE 364

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
             +  +LS       +  A    + M+   ++ D   Y  L+   C  G L     VL++
Sbjct: 365 AVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQE 424

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M   +L  D  TY  LV G C+ G++ EAF +   MV  G +    TY  +   L + G 
Sbjct: 425 MLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGD 484

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              A + +     + ++L+   + SL + L      ++A   + +M+   LK
Sbjct: 485 VQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLK 536



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 83/205 (40%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  L+   CK  K+ EA +V + M + G   + +T+  +   L +   ++ A  L+  M 
Sbjct: 437 YTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMS 496

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +  +   YN L+   C  G L      +  M+   L  D  TY  L+   C++G ++
Sbjct: 497 NKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELD 556

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A  LL+ M+D+G      TY  +M      G      K +     ++I  +   + SL 
Sbjct: 557 RAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLM 616

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
            +            I K M  R+++
Sbjct: 617 KQYCIGNNMKSTTEIYKGMCSRNVE 641



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 11/209 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A + ++ RL     +DEA+ +     +G    +  +++ +L VL    R+E+A  L
Sbjct: 233 PSPEACNAVLSRL----PLDEAIELF----QGLPDKNVCSYNILLKVLCGAGRVEDARQL 284

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +   E+   PD+  Y  L+  YC  G L     +L  M    +  +A  Y ++V   C 
Sbjct: 285 FD---EMASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCD 341

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV +A  ++  MV     +  + Y  V+      G    A ++      + +  D   
Sbjct: 342 KGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVT 401

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + +L + L       EA  +L+EM  R L
Sbjct: 402 YTTLINGLCRAGELKEAEKVLQEMLARRL 430


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 2/182 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P K  +  LI  LCK + I EA  V + M E G      T++ ++       +M+EA  
Sbjct: 147 IPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQK 206

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L  +M     +P++ +YN L+  +C  G +    G+L +M  + L  D  TY  L+ G C
Sbjct: 207 LFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFC 266

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GR +EA  LL+ M   G      TY+ V+  L + G+  +A  F ++   ++ K++  
Sbjct: 267 QVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEA--FELLKAMQESKIEPN 324

Query: 280 LF 281
           +F
Sbjct: 325 IF 326



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 116/263 (44%), Gaps = 5/263 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +LL  L +K  I  +V +     K G  PD  T   Y  ++N      +      LL K 
Sbjct: 15  TLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVIT---YSTIINGLCKMGNTTMALQLLKKM 71

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKS-AYDTLIGRLCKLKKI 119
               C      +N I ++     ++++     + + K G P     Y +++   C L ++
Sbjct: 72  EEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRV 131

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +EA  +   M E     + +TF  ++  L + + + EAW + E M E  + PD+  YN L
Sbjct: 132 NEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNAL 191

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +  YC +  +     +   M+ +    + R+Y+ L+ G C++GR++EA  LL  M     
Sbjct: 192 VDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSL 251

Query: 240 SVLYSTYAHVMGALLRLGYYAQA 262
           +    TY+ +M    ++G   +A
Sbjct: 252 TPDIFTYSTLMRGFCQVGRPQEA 274



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 5/281 (1%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           L+  L  K +I ++ LV  + T+ G  PD  T   Y+ LV+       ++  + L N   
Sbjct: 156 LIDGLCKKRMISEAWLVFETMTEKGLEPDVYT---YNALVDGYCSRSQMDEAQKLFNIMD 212

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKID 120
           R  C     ++N + N       + +    LA +      P    Y TL+   C++ +  
Sbjct: 213 RKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQ 272

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA  ++  M   G   + IT+  +L  L +   ++EA+ L++ M+E ++ P++  Y  L+
Sbjct: 273 EAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILI 332

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
              C  G L A   +   +  + +     TY  ++ G  + G   EA  L R M  +G  
Sbjct: 333 EGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCL 392

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELF 281
               TY  ++   LR G    AV+ +    G+    D+  F
Sbjct: 393 PNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTF 433



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 70/136 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TL+  LC   KI +A+++ D M + G     IT+  I++ L +      A  L
Sbjct: 8   PTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+E    P++ AYN ++ + C    +T       +M +E +  D  TY +++ G C 
Sbjct: 68  LKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCN 127

Query: 221 AGRVEEAFVLLRRMVD 236
            GRV EA  L ++MV+
Sbjct: 128 LGRVNEATSLFKQMVE 143



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 78/178 (43%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   + +TF+ +LS L    ++ +A  L + M ++   PD+  Y+ ++   C  GN T  
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +LKKMEE+    +   Y+ ++   C+   V EA      MV +G      TY+ ++  
Sbjct: 65  LQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHG 124

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              LG   +A         R++  +   F  L   L      +EA  + + M ++ L+
Sbjct: 125 FCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLE 182



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 63/146 (43%)

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M ++ + P L  +N LL+  C K  +     +  +M +     D  TY  ++ G C+ G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
              A  LL++M + G       Y  ++ +L +     +A+ F        I  D   + S
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 284 LGSKLIGLERFNEANFILKEMNKRDL 309
           +      L R NEA  + K+M +R++
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNV 146


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 133/278 (47%), Gaps = 10/278 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           PT+  Y+ L++   ++ +LE      +K  R+    T +T+N + +    +  +     +
Sbjct: 294 PTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGI 353

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            + ++  +KG  P    Y+ LI   C+   + +A  + D M   G   + +T+  ++ VL
Sbjct: 354 IKEMS--EKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVL 411

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           ++  RM++A  L E +    + PDL  +N L+  +C  GN+     +LK+M++ K+  D 
Sbjct: 412 SKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDE 471

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA--VKFV 266
            T++ L+ G CR G+VE A  L+  M   G    + +Y  ++    + G    A  V+  
Sbjct: 472 VTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDE 531

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           M+  G +  L T  + +L   L   E  + A  +LKEM
Sbjct: 532 MLSIGFNPTLLT--YNALIQGLCKNEEGDHAEQLLKEM 567



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 35/241 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I   C   +++ A  + D+M   G    + T+   +S + +  ++EEA G+
Sbjct: 224 PNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGM 283

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLT------------------------------ 190
           +E MKEI + P    YN L+  YC KGNL                               
Sbjct: 284 LEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFL 343

Query: 191 -----ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
                   G++K+M E+ L  D+ TY+ L+ G CR G V++AF L   M+  G      T
Sbjct: 344 DCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVT 403

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y  ++  L + G   QA         + I  D  +F +L          + A  +LKEM+
Sbjct: 404 YTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMD 463

Query: 306 K 306
           +
Sbjct: 464 Q 464



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 76/150 (50%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++ +I  LCK  K+ +A   + +M   G   + +T++ I+       R+E A  + ++M
Sbjct: 193 TFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLM 252

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K   V PD   Y   ++  C +G L   SG+L+KM+E  L   A TY+ L+ G C  G +
Sbjct: 253 KCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNL 312

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           E AF    +MV +G     STY  ++ AL 
Sbjct: 313 EMAFDYRDKMVREGLMPTVSTYNMLIHALF 342



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           YD LI   C+LK+ D+A    D+M   G        + +LS+  +  R E+AW L   M 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            +R+   +  +N ++   C +G L      +  ME   +  +  TY+ ++ G C  GRVE
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            A ++   M   G      TY   +  + + G   +A
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEA 280



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 9/232 (3%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNF 75
           + +  ++ G  PD   S  Y+ L+N     G+ +   T+   +  +       T  +  +
Sbjct: 353 IIKEMSEKGLVPD---SVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIY 409

Query: 76  ITNTENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           + +    +    DL   + R  KG FP    ++ LI   C    +D A  ++  M +   
Sbjct: 410 VLSKRGRMKQADDLFEKIVR--KGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKV 467

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
               +TF+ ++    R  ++E A  L+E MK   + PD  +YN L++ Y  +G++     
Sbjct: 468 VPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFR 527

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           V  +M          TY+AL+ G C+    + A  LL+ M+  G +   +TY
Sbjct: 528 VRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTY 579



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 99/241 (41%), Gaps = 21/241 (8%)

Query: 3   LLRKLPTKFLIPQSVL-------------VTRSFTKSGAFPD---EPTSAYYDDLVNAAG 46
           +++++  K L+P SV              V ++FT          +PT   Y  L+    
Sbjct: 353 IIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLS 412

Query: 47  HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD--KGFPRKS 104
               ++    L  K  R   F     FN + +   +   +      L  +D  K  P + 
Sbjct: 413 KRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEV 472

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++TL+   C+  K++ A  +++ M   G     I+++ ++S  ++   M++A+ + + M
Sbjct: 473 TFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEM 532

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
             I  +P L  YN L+   C          +LK+M  + +  +  TY +L+ G    G V
Sbjct: 533 LSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEG---IGNV 589

Query: 225 E 225
           E
Sbjct: 590 E 590


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 23/221 (10%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  L +  ++++A  +   M E GF L    ++ +++   R KR+ EA+ L
Sbjct: 351 PDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYEL 410

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MKE+ + PD+  YN LL+  C  G+  A   +L KM ++       T+  LV G C+
Sbjct: 411 LQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCK 470

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            G+++EA  +LR M + G    +V+Y+T                 + F  +C   D+ L 
Sbjct: 471 VGKIDEALRILRSMDESGIHPNNVIYNTL----------------IDF--LCKRGDVDLA 512

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL-KMGFKLRD 317
            ELF  +  K +        N +LK +  +++ +  F+L D
Sbjct: 513 IELFDEMKEKSVP-ANVTTFNALLKGLRDKNMPEKAFELMD 552



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 47/254 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKRMEEAW 158
           P    Y  L+  LCK  ++ +ALRV+D M+     +    +T + ++  L +  R++EA 
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL 229

Query: 159 GLMEV-MKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
             +E  M  +    P+   YN L+ A+C  GN++    +++KME E +  +  T + +V 
Sbjct: 230 AFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVG 289

Query: 217 GACRAGRVEEAFVLLR--RMV---DDGQSVLYSTYAHVMGALLRLGYYAQAVK------- 264
           G CRAGR   A    R  R V     G +V YST   ++GALL       A++       
Sbjct: 290 GLCRAGRTGAALEFFREKRTVWPEGKGNAVTYST---LVGALLHTNNVGMAMELFHEKMS 346

Query: 265 ----------FVMVCG----GR--------------DIKLDTELFGSLGSKLIGLERFNE 296
                     F M+ G    GR                KLDT+ +  L +     +R +E
Sbjct: 347 EGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHE 406

Query: 297 ANFILKEMNKRDLK 310
           A  +L+EM +  ++
Sbjct: 407 AYELLQEMKEVGIR 420



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 2/150 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L++ +    D   V  LL K   D C  +  TF  + +    +  + +  R 
Sbjct: 421 PDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRI 480

Query: 93  LARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  +D+    P    Y+TLI  LCK   +D A+ + D M E     +  TF+ +L  L  
Sbjct: 481 LRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRD 540

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
               E+A+ LM+ M+E R  PD    + L+
Sbjct: 541 KNMPEKAFELMDQMREERCFPDYVTVDVLM 570



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 13/218 (5%)

Query: 97  DKGFPRK-SAYDTLIGRLCKLKKIDEALRVV----DIMAEGGFGLSAITFHPILSVLTRG 151
           ++G P+     +T++G LC+  +   AL        +  EG    +A+T+  ++  L   
Sbjct: 274 NEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKG--NAVTYSTLVGALLHT 331

Query: 152 KRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +  A  L  E M E   SPD   Y  +++     G L     +   M+E     D + 
Sbjct: 332 NNVGMAMELFHEKMSEGH-SPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKA 390

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MV 268
           Y+ L+ G CR  R+ EA+ LL+ M + G      TY  ++    + G +A   + +  M+
Sbjct: 391 YNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMI 450

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             G    + T  FG+L      + + +EA  IL+ M++
Sbjct: 451 DDGCQPSVIT--FGTLVHGYCKVGKIDEALRILRSMDE 486



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 67/137 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+   CK         ++  M + G   S ITF  ++    +  +++EA  +
Sbjct: 421 PDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRI 480

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  + P+   YN L+   C +G++     +  +M+E+ + A+  T++AL+ G   
Sbjct: 481 LRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRD 540

Query: 221 AGRVEEAFVLLRRMVDD 237
               E+AF L+ +M ++
Sbjct: 541 KNMPEKAFELMDQMREE 557



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TL+   CK+ KIDEALR++  M E G   + + ++ ++  L +   ++ A  L
Sbjct: 456 PSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIEL 515

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            + MKE  V  ++T +N LL     K        ++ +M EE+   D  T D L+
Sbjct: 516 FDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLM 570


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 112/232 (48%), Gaps = 2/232 (0%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F ++ A   +P    Y+ LV     +  +     ++N+   D C     T+N + N    
Sbjct: 277 FNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCK 336

Query: 83  LSVLSDLCRTLA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +  +SD    +   + KG+ P    ++T+I   CK  K+D AL++V+ M   G    AIT
Sbjct: 337 MGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAIT 396

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ +L+ L +  + +E     E M      P+   YN L+  +C    L   SGV+ +M 
Sbjct: 397 YNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMS 456

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           ++ L  D  +++ L+ G CR G ++ A++L +++ + G S    T+  ++GA
Sbjct: 457 QDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGA 508



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CK+ +++EA  V+  M++ G     I+F+ ++    R   ++ A+ L
Sbjct: 427 PNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLL 486

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + + E   S     +N L+ AY  K N+     +  +M  +    D  TY  LV G+C+
Sbjct: 487 FQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCK 546

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           A  V+ A+V L  MV  G     +T+  V+ +L      ++AV  + +
Sbjct: 547 AANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHI 594



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 1/185 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP  + ++ ++  LC+   I E+  ++  + + G  ++  T +  +  L  G R+EEA  
Sbjct: 112 FPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVA 171

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+E M +  ++PD+  YN L+   C    +   +  L++M  +    D  TY+ ++ G C
Sbjct: 172 LVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYC 230

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +   ++EA  LL+  +  G      TY  ++  L   G   +A++       +D+K D  
Sbjct: 231 KRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLV 290

Query: 280 LFGSL 284
           ++ SL
Sbjct: 291 VYNSL 295



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  LCK  K+ EA + +  M   G      T++ I+    +   ++EA  L
Sbjct: 182 PDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATEL 241

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++        PD   Y  L+   C +G++     +  + + + L  D   Y++LV G CR
Sbjct: 242 LKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCR 301

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G +  A  ++  MV+DG      TY  V+  L ++G  + A
Sbjct: 302 QGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDA 343



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 108/248 (43%), Gaps = 23/248 (9%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R L     + ++    R     G  PD+ T   Y+ +++       L+    LL   
Sbjct: 189 TLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFT---YNTIIDGYCKRDMLQEATELL--- 242

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLC------RTLARLDKGF-----PRKSAYDTLI 110
            +D  F       F+ +     S+++ LC      R L   ++       P    Y++L+
Sbjct: 243 -KDAIFK-----GFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLV 296

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
             LC+   I  AL+V++ M E G      T++ +++ L +   + +A  +M         
Sbjct: 297 KGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYL 356

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           PD+  +N ++  YC +  L +   ++++M    +  DA TY++++ G C+AG+ +E    
Sbjct: 357 PDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNET 416

Query: 231 LRRMVDDG 238
              M+  G
Sbjct: 417 FEEMILKG 424



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 2/227 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L+     +  ++     L +     C     T+N I +      +L +    
Sbjct: 182 PDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATEL 241

Query: 93  LA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L   + KGF P +  Y +LI  LC    ++ AL + +           + ++ ++  L R
Sbjct: 242 LKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCR 301

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              +  A  +M  M E    PD+  YN ++   C  GN++  + V+     +    D  T
Sbjct: 302 QGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 361

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           ++ ++ G C+  +++ A  L+ RM   G +    TY  V+  L + G
Sbjct: 362 FNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAG 408



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 60/134 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +   I   C   +   ALR++  + E G  +  + +  ++  L       +A  L
Sbjct: 43  PDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHL 102

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    V PD+  +N +L A C KG++  +  +L K+ +  +  +  T +  + G C 
Sbjct: 103 FDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCE 162

Query: 221 AGRVEEAFVLLRRM 234
            GR+EEA  L+  M
Sbjct: 163 GGRLEEAVALVESM 176



 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 10/212 (4%)

Query: 33  PTSAYYDDLVNA---AGHERDL-ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD 88
           P +  Y+ ++N    AG  +++ ET   ++ K  R      A T+N +      ++ L +
Sbjct: 392 PDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRP----NAITYNILIENFCKINQLEE 447

Query: 89  LCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
               + R+  D   P   +++TLI   C+   +D A  +   + E G+  +A TF+ ++ 
Sbjct: 448 ASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIG 507

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
             +    M+ A  +   M      PDL  Y  L+   C   N+      L +M  +    
Sbjct: 508 AYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVP 567

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
              T+  ++       RV EA  ++  MV  G
Sbjct: 568 SMATFGRVLNSLAMNHRVSEAVAIIHIMVRMG 599


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 1/175 (0%)

Query: 93  LARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD G+P     ++ L+ RLCK  K+ +A  + D + + G   +A++F+ +++   + 
Sbjct: 221 LEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKS 280

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +EE + L  VM+E RV PD+  Y+ L+   C +  L   + + K+M +  L  +  T+
Sbjct: 281 GNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTF 340

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             L+ G C+ GRV+ A  + ++M   G       Y  ++  L + GY+ +A KFV
Sbjct: 341 TTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFV 395



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 95/201 (47%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+ R+ K+     AL     + + G+  +  TF+ +++ L +  ++++A  + + +++  
Sbjct: 203 LLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTG 262

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + P   ++N L+  YC  GNL     +   MEE ++  D  TY AL+ G C+  ++E+A 
Sbjct: 263 LQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDAN 322

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            L + M D G      T+  ++    + G    A++       + +K D  L+ +L   L
Sbjct: 323 HLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGL 382

Query: 289 IGLERFNEANFILKEMNKRDL 309
                F EA   + EM KR L
Sbjct: 383 CKGGYFREARKFVGEMTKRGL 403



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 38/246 (15%)

Query: 32  EPTSAYYDDLVNAAGHERDLE-------------------TVRYLLNKRARDCCFNTANT 72
           +PT+  ++ L+N      +LE                   T   L++   ++C    AN 
Sbjct: 264 QPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDAN- 322

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
                       +  ++C      D+G  P    + TLI   CK  ++D AL +   M  
Sbjct: 323 -----------HLFKEMC------DRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFT 365

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     + ++ ++  L +G    EA   +  M +  + PD   Y  LL   C +G+L  
Sbjct: 366 KGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLEL 425

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              + K+M +E +  D   + A++ G CR G++ +A   LR M+  G      TY  VM 
Sbjct: 426 ALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMD 485

Query: 252 ALLRLG 257
              + G
Sbjct: 486 GFCKKG 491



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TL+   CK   ++ AL +   M + G  L  + F  I+S L R  ++ +A   
Sbjct: 405 PDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERT 464

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    + PD   Y  ++  +C KG++     +LK+M+ +       TY+ L+ G C+
Sbjct: 465 LREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCK 524

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G+V+ A +LL  M++ G
Sbjct: 525 QGQVKNADMLLNAMLNLG 542



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 15/216 (6%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y  LI  LCK  ++++A  +   M + G   + +TF  +++   +  R++ A  
Sbjct: 299 FPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALE 358

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    +  DL  YN L+   C  G        + +M +  L  D  TY  L+ G+C
Sbjct: 359 IYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSC 418

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G +E A  + + MV +G  +    +  ++  L R G    A + +       +K D  
Sbjct: 419 KEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDD- 477

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
                G+  + ++ F           K D+KMGFKL
Sbjct: 478 -----GTYTMVMDGF---------CKKGDVKMGFKL 499



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+TLI  LCK     EA + V  M + G      T+  +L    +   +E A  + + M 
Sbjct: 375 YNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMV 434

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  +  D  A+  +++  C  G +      L++M    L  D  TY  ++ G C+ G V+
Sbjct: 435 KEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVK 494

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             F LL+ M  DG      TY  +M  L + G    A
Sbjct: 495 MGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNA 531



 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 8/202 (3%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           TK G  PD+ T   Y  L++ +  E DLE    +  +  ++        F  I +     
Sbjct: 399 TKRGLIPDKFT---YTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRD 455

Query: 84  SVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
             + D  RTL  + +    P    Y  ++   CK   +    +++  M   G     IT+
Sbjct: 456 GKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITY 515

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + +++ L +  +++ A  L+  M  + V PD   YN LL  +C  G L     V  +M  
Sbjct: 516 NVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEM-- 573

Query: 202 EKLGADARTYDALVLGACRAGR 223
             L +D  +Y +L+    +A +
Sbjct: 574 -GLVSDYASYRSLLHELSKASK 594



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 54/120 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           A+  +I  LC+  KI +A R +  M   G      T+  ++    +   ++  + L++ M
Sbjct: 444 AFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEM 503

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +     P +  YN L+   C +G +     +L  M    +  D  TY+ L+ G C+ G++
Sbjct: 504 QSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKL 563


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 5/243 (2%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           +SG  PD  T   ++ L++    +  ++    +L+   +  C     T+N + +      
Sbjct: 271 QSGTHPDVVT---FNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAG 327

Query: 85  VLSDLCRTLARLD-KG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
             ++ C  L+ +D +G  P    Y++LIG  C+  +I++A ++ ++M E G     I++ 
Sbjct: 328 RANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYC 387

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +   L + +R +EA+ L++ M +    P+L  +N L+   C    L     +L  M   
Sbjct: 388 TLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRV 447

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
                A TY+ LV G C+AGRV++A  +L  MV +G   L S+   ++  L R G    A
Sbjct: 448 GCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLA 507

Query: 263 VKF 265
           + +
Sbjct: 508 LHY 510



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 115/267 (43%), Gaps = 48/267 (17%)

Query: 84  SVLSDLCRT--LARLDKGF-------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           S++  LC T  L+R  + F       P    ++ L+  LCK  ++ EA ++++ M+E G 
Sbjct: 145 SIVQALCNTGNLSRAMQYFRESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGI 204

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG------- 187
               +T++ ++  L +  RMEEA  L+E M + +V P+L  YN L+  YC  G       
Sbjct: 205 VPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQ 264

Query: 188 ----------------------------NLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
                                        +     VL  M++     +  TY+ L+ G C
Sbjct: 265 LIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLC 324

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            AGR  EA  LL  M  DG+ +L    TY  ++G   R     QA +   +   R +  D
Sbjct: 325 DAGRANEACELLSEM--DGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPD 382

Query: 278 TELFGSLGSKLIGLERFNEANFILKEM 304
              + +L   L+  ERF+EA  +L  M
Sbjct: 383 GISYCTLAVALLKSERFDEAFALLDNM 409



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 4/208 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   CK      A ++++ M + G     +TF+ ++S   +  ++++A  +
Sbjct: 241 PNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEV 300

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +MK+   +P+L  YN L++  C  G       +L +M+   +  D  TY++L+   CR
Sbjct: 301 LHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCR 360

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
             ++E+AF +   MV+ G      +Y  +  ALL+   + +A   +  M   G    L T
Sbjct: 361 NFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFT 420

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
             F SL   L    R +EA  +L  M +
Sbjct: 421 --FNSLMEGLCCSRRLDEARHLLAVMRR 446



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 8/204 (3%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+TLIG  CK   ++ A +++  M E G     +T   I+  L     +  A   M+  +
Sbjct: 108 YNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRA---MQYFR 164

Query: 166 E-IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           E +  +PD   +N L+   C    L+    ++++M E  +  D  TY++L+ G C++ R+
Sbjct: 165 ESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRM 224

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFG 282
           EEA  LL  MV         TY  ++    + G    A + +  M+  G     D   F 
Sbjct: 225 EEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSG--THPDVVTFN 282

Query: 283 SLGSKLIGLERFNEANFILKEMNK 306
           SL S      + ++A  +L  M K
Sbjct: 283 SLISGFCQKSKIDKACEVLHLMKK 306



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 2/117 (1%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           IT++ ++    +   ME A+ L+  MKE   SPD+  ++ ++ A C  GNL+      + 
Sbjct: 106 ITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFR- 164

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            E  +   D+  ++ LV G C+A ++ EA  ++  M + G      TY  ++  L +
Sbjct: 165 -ESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCK 220



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ L+ G C+AG +E AF LL  M + G S    T++ ++ AL   G  ++A+++    
Sbjct: 107 TYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFR-- 164

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              +   D+ LF  L   L    + +EA  +++EM++R +
Sbjct: 165 ESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGI 204


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 5/209 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G+ P    Y  +I  LC++ +ID+A  ++D     GF      +  +     +  R+
Sbjct: 152 LDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRL 211

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A   +E+ + I  SPD  AYN ++  +C K +       LK+M E K+  D  TY+ L
Sbjct: 212 KDA---LEIFRNIP-SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNIL 267

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+A + ++A  +L  MVD G +    T+  +M  L + G + +A   + V   R+ 
Sbjct: 268 IDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNC 327

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKE 303
           +     + +L S L   +  + A  ++ E
Sbjct: 328 RPSCCTYNTLISGLCKQQNVDRAKDLVDE 356



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++  LCK  K+DEA   ++ M   G     ++++ I+  L +  + +EA  +
Sbjct: 571 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQV 630

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  + PD   YN L+  +C +       G+LK M +  +  D  TY+ L+ G  +
Sbjct: 631 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 690

Query: 221 AGRVEEAFVLLRRMVDDGQSV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             R+ +A+ L+  M+ +G  V   +TY  ++  L + G   QA+  +    G  ++ +T 
Sbjct: 691 TNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTV 750

Query: 280 LFGSLGSKLIGLERFNEANFILKEMN 305
            +     +L    R +EA+ +L EM+
Sbjct: 751 TYNIFIDRLCKEGRLDEASSLLSEMD 776



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 35/243 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK  K D+A  ++  M + G     +TF+ I+  L +  + E A  L
Sbjct: 259 PDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 318

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + VM E    P    YN L++  C + N+     ++ +        D  TY  L  G C+
Sbjct: 319 LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCK 378

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYA----------------HVMGALLRLGYYAQAVK 264
            GR++EAF L++ M   G +    TY                  ++ +L+  G+    V 
Sbjct: 379 RGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVT 438

Query: 265 FVMVCGG--RDIKLDTEL-----------------FGSLGSKLIGLERFNEANFILKEMN 305
           + ++  G  ++ +LD  L                 + +L   L    R +EA+ I KEM 
Sbjct: 439 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 498

Query: 306 KRD 308
            +D
Sbjct: 499 SKD 501



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 55/327 (16%)

Query: 23  FTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI----- 76
           F  SG  PD  T S   D L      +   E V+ +  K     C     T+N +     
Sbjct: 357 FVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKG----CTPNLVTYNTLIDGLC 412

Query: 77  --TNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
             + TE +  +L  L      +  GF P    Y  ++  LCK  ++D+AL++V+ M + G
Sbjct: 413 KASKTEKAYELLESL------VSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRG 466

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGL--------------------------------M 161
              S IT+  ++  L R  R++EA  +                                 
Sbjct: 467 CTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQ 526

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           +V+  IR +P +  YN L+  YC +G L     V + M       + +TY+ ++ G C+ 
Sbjct: 527 KVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKH 586

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTE 279
           G+V+EAF  L  M   G      +Y  ++  L +     +A + +  M+  G  I  D  
Sbjct: 587 GKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAG--IPPDAV 644

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            + +L ++    ERF++A  ILK M K
Sbjct: 645 TYNTLMAQFCKEERFDDAVGILKNMIK 671



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 88/201 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK + +D A  +VD     GF    +T+  +   L +  R++EA+ L
Sbjct: 329 PSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFEL 388

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M     +P+L  YN L+   C          +L+ +       D  TY  +V G C+
Sbjct: 389 VKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCK 448

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+++A  ++  M+  G +    TY  +M  L R G   +A         +D   D   
Sbjct: 449 EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALA 508

Query: 281 FGSLGSKLIGLERFNEANFIL 301
           + SL +      R  EA  ++
Sbjct: 509 YVSLVNGYCKSSRTKEAQKVV 529



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 4/209 (1%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+T+I RLCK   + +AL ++D M   G   + +T++  +  L +  R++EA  L+  
Sbjct: 715 TTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSE 774

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK-LGADARTYDALVLGACRAG 222
           M  +R   D  +Y  ++   C    L   S + ++M   K L   + T++ L+    +  
Sbjct: 775 MDTLR---DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTK 831

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           R++EA  LL  MV  G S    TY  V+  L +L    +A +       R I   +  + 
Sbjct: 832 RLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYT 891

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDLKM 311
            L   L G  R  EA  +L+EM   D ++
Sbjct: 892 VLIYGLCGQGRGKEALQVLEEMASSDCEI 920



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 1/146 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+ + CK ++ D+A+ ++  M + G     +T++ ++S L++  R+ +A+ L
Sbjct: 641 PDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYEL 700

Query: 161 M-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           M E+++   V    T YN ++   C +G L     ++  M    + A+  TY+  +   C
Sbjct: 701 MHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLC 760

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYST 245
           + GR++EA  LL  M      V Y+T
Sbjct: 761 KEGRLDEASSLLSEMDTLRDEVSYTT 786



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 71/172 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ +I   C+    D AL  +  M E        T++ ++  L +  + ++A  +
Sbjct: 224 PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEM 283

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V+PD   +N ++   C  G       +L  M E        TY+ L+ G C+
Sbjct: 284 LHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCK 343

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
              V+ A  L+   V  G      TY+ +   L + G   +A + V    G+
Sbjct: 344 QQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGK 395



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 4/182 (2%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M + G+   + T+H ++  L +  ++++A+ +++  K     P+++ Y  L  A+C  G 
Sbjct: 151 MLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGR 210

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L     + + +       DA  Y+A++ G CR    + A   L+ M +   +    TY  
Sbjct: 211 LKDALEIFRNIP----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNI 266

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++  L +     +A + +     R +  DT  F S+   L    +F  A+ +L  M +R+
Sbjct: 267 LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN 326

Query: 309 LK 310
            +
Sbjct: 327 CR 328


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 2/229 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD-LC 90
           +P    ++ L+N    ++ ++  R L +  A       A TFN + +      ++ +   
Sbjct: 340 KPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFA 399

Query: 91  RTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              + LD+G FP  S Y+ LI  LC+ + +  A ++++ M         +T++ ++    
Sbjct: 400 LHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWC 459

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +     +A  L+  M  + V P+   YN L+  YC +GNL A   V  +ME+E   A+  
Sbjct: 460 KDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVV 519

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           TY+ L+ G C+ G++E+A  LL  M++ G +   +TY  V   +L  G+
Sbjct: 520 TYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEKGF 568



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 5/189 (2%)

Query: 81  NSLSVLSDLCRTLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N LS    L   +A  DK       P    ++ LI   CK K I EA ++ D +AE    
Sbjct: 316 NGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLV 375

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            +AITF+ ++    +   MEE + L   M +  + P+++ YN L+   C   N+ A   +
Sbjct: 376 PNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKL 435

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L +ME  +L AD  TY+ L+ G C+ G   +A  LL  M++ G    + TY  +M     
Sbjct: 436 LNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCM 495

Query: 256 LGYYAQAVK 264
            G    A+K
Sbjct: 496 EGNLKAALK 504



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 81/159 (50%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +K  P +  ++TLI   CK + +  A    + M   G   + +T++ +++ L+   +++E
Sbjct: 267 NKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDE 326

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L + M  + + P++  +N L+  +C K  +     +   + E+ L  +A T++ ++ 
Sbjct: 327 AIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMID 386

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             C+AG +EE F L   M+D+G     STY  ++  L R
Sbjct: 387 AFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCR 425



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  L    K+DEA+ + D M   G   + +TF+ +++   + K ++EA  L
Sbjct: 306 PNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKL 365

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + + E  + P+   +N ++ A+C  G +     +   M +E +  +  TY+ L+ G CR
Sbjct: 366 FDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCR 425

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
              V  A  LL  M +        TY  ++G   + G  ++A K +
Sbjct: 426 NQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLL 471



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 72/141 (51%), Gaps = 3/141 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR---GKRMEEA 157
           P  + ++  I  LCK  K+++A  V++ +   GF  + +T++ ++    +     +M  A
Sbjct: 198 PNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRA 257

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             +++ M   ++ P+   +N L+  +C   N+ A     ++M+ + L  +  TY++L+ G
Sbjct: 258 DAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLING 317

Query: 218 ACRAGRVEEAFVLLRRMVDDG 238
               G+++EA  L  +MV  G
Sbjct: 318 LSNNGKLDEAIALWDKMVGLG 338



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           +I  A  V   + + GF LS  + +P+LS L +G    E   + + M + R+ P+LT +N
Sbjct: 145 EIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFN 204

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR---AGRVEEAFVLLRRM 234
             +   C  G L     V++ ++      +  TY+ L+ G C+   AG++  A  +L+ M
Sbjct: 205 IFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEM 264

Query: 235 V 235
           +
Sbjct: 265 L 265



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 10/240 (4%)

Query: 75  FITNTENSLSVLSDLCRTLARL-DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           ++TN E     +   C    R+ D GF    ++ + L+  L K  +  E   V   M + 
Sbjct: 140 YVTNLE-----IHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKR 194

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN---L 189
               +  TF+  ++ L +  ++ +A  ++E +K    SP++  YN L+  +C KG+   +
Sbjct: 195 RIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKM 254

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +LK+M   K+  +  T++ L+ G C+   V  A      M   G      TY  +
Sbjct: 255 YRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSL 314

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   G   +A+       G  +K +   F +L +     +   EA  +  ++ ++DL
Sbjct: 315 INGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDL 374


>gi|357131125|ref|XP_003567192.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like, partial [Brachypodium distachyon]
          Length = 457

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 3/205 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI  LC+   +  AL VV +M + G     I+F+ +L+  ++  R+++A  +
Sbjct: 206 PSVYSYNILISALCQKPALSAALNVVTLMEKCGVLPDNISFNTLLNGFSKNGRVDDAEAV 265

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E+MKE  + PD  +YN  L     +G +     V+++ME+E    D  +Y+ L+ G C 
Sbjct: 266 WEMMKERNLEPDTKSYNAKLRGLVAEGRIEDAVAVVERMEKEGPKPDTVSYNELIRGYCS 325

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK---LD 277
           AGR+E+A  L   +V +  +    TY  ++  LL+ G    A+++       +IK   +D
Sbjct: 326 AGRLEDAKKLYDGLVKNECAPNKGTYETLLPRLLQAGELDCALRYCHELFSSNIKSCRVD 385

Query: 278 TELFGSLGSKLIGLERFNEANFILK 302
             L   + + L+   R +EA  I++
Sbjct: 386 CSLLQDVVTTLVEASRVDEAAKIVE 410



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 8/151 (5%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS-----PDLTAYNYLLTAYCFKGNLTATS 193
           +TF+ +L+  +R K  +    L    +EI  S     P + +YN L++A C K  L+A  
Sbjct: 172 MTFNAVLTAYSRAKEFD---ALATAFQEIPASHPLVVPSVYSYNILISALCQKPALSAAL 228

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            V+  ME+  +  D  +++ L+ G  + GRV++A  +   M +        +Y   +  L
Sbjct: 229 NVVTLMEKCGVLPDNISFNTLLNGFSKNGRVDDAEAVWEMMKERNLEPDTKSYNAKLRGL 288

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +  G    AV  V        K DT  +  L
Sbjct: 289 VAEGRIEDAVAVVERMEKEGPKPDTVSYNEL 319


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 18/278 (6%)

Query: 3    LLRKLPTKFLIPQSVLVTR---SFTKSGAFPD-------------EPTSAYYDDLVNAAG 46
            L  ++  K L P SV  T     + K+G   D              P    Y  L++   
Sbjct: 851  LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 910

Query: 47   HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKSA 105
             E DL++   LL++  +        T+N I N       + +  + +   +  G    + 
Sbjct: 911  KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 970

Query: 106  -YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
             Y TL+   CK  ++D+A  ++  M   G   + +TF+ +++       +E+   L+  M
Sbjct: 971  TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1030

Query: 165  KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                ++P+ T +N L+  YC + NL A + + K M    +G D +TY+ LV G C+A  +
Sbjct: 1031 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 1090

Query: 225  EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            +EA+ L + M   G SV  STY+ ++   L+   + +A
Sbjct: 1091 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEA 1128



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 7/249 (2%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C+N A ++N + +    L  + +    L  ++ KG+ P   +Y T++   C+  ++D+  
Sbjct: 686 CWNVA-SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVW 744

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           +++++M   G   ++  +  I+ +L R  ++ EA      M    + PD   Y  L+  +
Sbjct: 745 KLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGF 804

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C +G++ A S    +M    +  D  TY A++ G C+ G + EA  L   M   G     
Sbjct: 805 CKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDS 864

Query: 244 STYAHVMGALLRLGYYAQA--VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
            T+  ++    + G+   A  V   M+  G    + T  + +L   L      + AN +L
Sbjct: 865 VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVT--YTTLIDGLCKEGDLDSANELL 922

Query: 302 KEMNKRDLK 310
            EM K  L+
Sbjct: 923 HEMWKIGLQ 931



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 88/207 (42%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P    +  LI   CK   + +A RV + M + G   + +T+  ++  L +   ++ A  L
Sbjct: 862  PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 921

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +  M +I + P++  YN ++   C  GN+     ++ + E   L AD  TY  L+   C+
Sbjct: 922  LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 981

Query: 221  AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            +G +++A  +L+ M+  G      T+  +M      G      K +     + I  +   
Sbjct: 982  SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 1041

Query: 281  FGSLGSKLIGLERFNEANFILKEMNKR 307
            F SL  +         A  I K+M  R
Sbjct: 1042 FNSLVKQYCIRNNLKAATAIYKDMCSR 1068



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 93/238 (39%), Gaps = 11/238 (4%)

Query: 84   SVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            S++  LCR   LA  ++ F         P    Y TLI   CK   I  A +    M   
Sbjct: 764  SIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 823

Query: 133  GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
                  +T+  I+S   +   M EA  L   M    + PD   +  L+  YC  G++   
Sbjct: 824  DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 883

Query: 193  SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
              V   M +     +  TY  L+ G C+ G ++ A  LL  M   G      TY  ++  
Sbjct: 884  FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 943

Query: 253  LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            L + G   +AVK V       +  DT  + +L          ++A  ILKEM  + L+
Sbjct: 944  LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ 1001



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 86/190 (45%), Gaps = 6/190 (3%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K   A+ V     E G   +  +++ ++  + +  R++EA  L+ +M+    +PD+ +Y+
Sbjct: 669 KTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 728

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++  YC  G L     +++ M+ + L  ++  Y +++   CR  ++ EA      M+  
Sbjct: 729 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 788

Query: 238 G---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           G    +V+Y+T   ++    + G    A KF      RDI  D   + ++ S    +   
Sbjct: 789 GILPDTVVYTT---LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 845

Query: 295 NEANFILKEM 304
            EA  +  EM
Sbjct: 846 VEAGKLFHEM 855



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 5/202 (2%)

Query: 13   IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
            I ++V +   F  +G   D  T   Y  L++A     +++  + +L +        T  T
Sbjct: 950  IEEAVKLVGEFEAAGLNADTVT---YTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 1006

Query: 73   FNFITNTENSLSVLSDLCRTL-ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
            FN + N      +L D  + L   L KG  P  + +++L+ + C    +  A  +   M 
Sbjct: 1007 FNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMC 1066

Query: 131  EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
              G G    T+  ++    + + M+EAW L + MK    S  ++ Y+ L+  +  +    
Sbjct: 1067 SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 1126

Query: 191  ATSGVLKKMEEEKLGADARTYD 212
                V  +M  E L AD   +D
Sbjct: 1127 EAREVFDQMRREGLAADKEIFD 1148



 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 4/131 (3%)

Query: 180 LTAYCFKGNLTATSG-VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+  C+K   TAT+  V ++  E  +  +  +Y+ ++   C+ GR++EA  LL  M   G
Sbjct: 663 LSKDCYK---TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKG 719

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            +    +Y+ V+    R G   +  K + V   + +K ++ ++GS+   L  + +  EA 
Sbjct: 720 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 779

Query: 299 FILKEMNKRDL 309
               EM ++ +
Sbjct: 780 EAFSEMIRQGI 790


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 100/211 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C +   D+A++++D MA      +  T+  ++  L R  ++EEA G+
Sbjct: 298 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 357

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P +  +N L+  YC +G + +   +L  ME+     + RTY+ L+ G CR
Sbjct: 358 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 417

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +  +AF+LLRR+VD+G      TY  ++    + G    A           ++ D   
Sbjct: 418 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 477

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           F +L   L  L R  +AN IL  M K+ + +
Sbjct: 478 FTALIDGLCKLGRLEQANGILGSMVKKGISL 508



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 122/315 (38%), Gaps = 39/315 (12%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P S  Y  L++       LE    L  +     C  +  T+  +   +  + +     + 
Sbjct: 263 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 322

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  +      P    Y  LI RLC+  KI+EA  V   M + G     ITF+ +++   +
Sbjct: 323 LDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK 382

Query: 151 GKRMEEAWGLMEVMKE-----------------IRVS------------------PDLTA 175
              +  A+ L+ VM++                  RVS                  PD   
Sbjct: 383 EGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVT 442

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           YN L+  +C +G L     +   M    L  D  T+ AL+ G C+ GR+E+A  +L  MV
Sbjct: 443 YNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMV 502

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT-ELFGSLGSKLIGLERF 294
             G S+   T+  ++    ++G  A+ V F+      +  L T   F      L    + 
Sbjct: 503 KKGISLDEVTFTALIDGHCKIG-KAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 561

Query: 295 NEANFILKEMNKRDL 309
           NEAN +L +M K  L
Sbjct: 562 NEANAMLGKMMKYGL 576



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 123/287 (42%), Gaps = 25/287 (8%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           ++ L+ R    +G  PD  T   Y+ LV+    E  L     +         FN+ N+  
Sbjct: 423 KAFLLLRRVVDNGLLPDRVT---YNILVDGFCKEGQLNMAFNI---------FNSMNSAG 470

Query: 75  FITNTENSLSVLSDLCRTLARLD-----------KGFP-RKSAYDTLIGRLCKLKKIDEA 122
              +     +++  LC+ L RL+           KG    +  +  LI   CK+ K  + 
Sbjct: 471 LEPDGFTFTALIDGLCK-LGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDV 529

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
             + + M E     +A TF+  L  L +  ++ EA  ++  M +  + P +  +  L+  
Sbjct: 530 CFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG 589

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           +C  G    +  +L++M++     +  TY  ++ G C  GRVEEA  +L  M   G S  
Sbjct: 590 HCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPN 649

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           + TYA ++ A ++ G   +A + V        + ++ ++ +L S  +
Sbjct: 650 HFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFV 696



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 1/192 (0%)

Query: 114 CKLKKIDEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           C+   + EA RV + M+ E     +++T+  ++  L    R+EEA+ L + M E    P 
Sbjct: 240 CRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 299

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
              Y  L+ A C  G       +L +M  +    +  TY  L+   CR G++EEA  + R
Sbjct: 300 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 359

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
           +M+  G      T+  ++    + G+   A + + V    + K +   +  L   L  + 
Sbjct: 360 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVS 419

Query: 293 RFNEANFILKEM 304
           +  +A  +L+ +
Sbjct: 420 KSYKAFLLLRRV 431



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 103/283 (36%), Gaps = 60/283 (21%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + Q+  +  S  K G   DE T     D     G  +D   V +L      + C  TA+T
Sbjct: 491 LEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKD---VCFLFENMVENRCLTTAHT 547

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           FN   +       L++    L ++ K    P    +  LI   C+  +   +L++++ M 
Sbjct: 548 FNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMK 607

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           + G   +  T+  I++ L    R+EEA  ++  M    VSP+   Y  L+ A+   G L 
Sbjct: 608 QAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLD 667

Query: 191 ATSGVLKKM---------------------EEEKLGA---------DART---------- 210
               ++  M                         +GA         DAR+          
Sbjct: 668 RAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNC 727

Query: 211 ---------------YDALVLGACRAGRVEEAFVLLRRMVDDG 238
                          Y+ LV+G C+ GR+ EA  L + MV  G
Sbjct: 728 LSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHG 770


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 99/219 (45%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           R    +    P    Y TLI   CK  + +EALR+ ++M   G     +T++ IL  L  
Sbjct: 291 RMFGEIKDAIPNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCS 350

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R+ +A  L+  M E +V  D    N L+ AYC  G+L +      KM E  L  ++ T
Sbjct: 351 DGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFT 410

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y AL+ G C+   +E A  LL  M+D G S  Y TY+ ++ +  +       +       
Sbjct: 411 YKALIHGFCKTSELESAKELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFL 470

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +   L+  L+ +L  +L  +ER   A  +L  M  + +
Sbjct: 471 SKGFCLNISLYRALIRRLCKIERIECAEKLLYHMEGKGI 509



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 95/210 (45%), Gaps = 2/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A   L+  L K        +V   M + G   +   ++ ++   ++ + +E A  +
Sbjct: 163 PHLHACTVLMNSLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFI 222

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   V PD+  YN L+  YC KG       V  KME E +  D  +Y++L+ G C+
Sbjct: 223 LNEMEVKGVVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCK 282

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ EA  +   + D   +  + TY  ++    +   + +A++   +   + +      
Sbjct: 283 EGKMREAMRMFGEIKDAIPN--HVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVT 340

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + S+  KL    R  +AN +L EM++R ++
Sbjct: 341 YNSILRKLCSDGRIRDANKLLHEMSERKVQ 370



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 93/216 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y++++ +LC   +I +A +++  M+E      ++T + +++   +   +  A  
Sbjct: 335 YPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALK 394

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M E  ++P+   Y  L+  +C    L +   +L  M +     + RTY  +V   C
Sbjct: 395 FKTKMLEAGLTPNSFTYKALIHGFCKTSELESAKELLFGMLDAGFSPNYRTYSWIVDSYC 454

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +    +    L    +  G  +  S Y  ++  L ++     A K +    G+ I  D+ 
Sbjct: 455 KKDNTDAVLALPDEFLSKGFCLNISLYRALIRRLCKIERIECAEKLLYHMEGKGISGDSV 514

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
           ++ SL          N A+ +L+EM +R L +  K+
Sbjct: 515 IYTSLAFSYWKSGNTNAASDMLEEMARRRLMITVKI 550



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD GF P    Y  ++   CK    D  L + D     GF L+   +  ++  L + +R+
Sbjct: 435 LDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRALIRRLCKIERI 494

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E A  L+  M+   +S D   Y  L  +Y   GN  A S +L++M   +L    + Y   
Sbjct: 495 ECAEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAASDMLEEMARRRLMITVKIYRCF 554

Query: 215 VLGACRAGRVEEAF 228
                   +V + F
Sbjct: 555 SALDASQNKVSQMF 568


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 5/242 (2%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVD 127
           A T+N + N      +L +    LAR+ K    P +  Y+TL+    +L  I +A +VV+
Sbjct: 239 AVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVE 298

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI-RVSPDLTAYNYLLTAYCFK 186
            M   GF     T++ + + L +  +++EA+ L + M+ +  + PD+  YN L  A CFK
Sbjct: 299 AMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADA-CFK 357

Query: 187 GNLTATS-GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
              ++ +  +L++M E+ + A   T++ ++ G C+ G +E A   L +M DDG +    T
Sbjct: 358 CRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVIT 417

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y  ++ A  + G  A+A   +     R +KLDT    ++   L   +R+ EA  +L+   
Sbjct: 418 YNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPP 477

Query: 306 KR 307
           +R
Sbjct: 478 QR 479



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 113/255 (44%), Gaps = 3/255 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ L+NA   +  L   R LL +  +D    T  T+N + +    L  +    + 
Sbjct: 237 PDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKV 296

Query: 93  L-ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS-AITFHPILSVLT 149
           + A    GF P    Y+ L   LC+  K+DEA R+ D M   G  L   +T++ +     
Sbjct: 297 VEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACF 356

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + +   +A  L+E M+E  V   L  +N ++   C  G L    G L KM ++ L  D  
Sbjct: 357 KCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVI 416

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ L+   C+AG + +A+ L+  MV  G  +   T   V+  L +   Y +A   +   
Sbjct: 417 TYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSP 476

Query: 270 GGRDIKLDTELFGSL 284
             R    D   +G++
Sbjct: 477 PQRGFMPDEVSYGTV 491



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 1/208 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P + +Y T++    K    + ALR+ D M E     S  T++ ++  L+R  R++E
Sbjct: 479 RGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKE 538

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A   +  + E  + PD T YN ++ AYC +G+L        KM E     D  T + L+ 
Sbjct: 539 AIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMN 598

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C  G++++A  L    V+ G+ V   TY  ++  + + G    A+ F      R ++ 
Sbjct: 599 GLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQP 658

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           D   +  + S L    R  EA  +L ++
Sbjct: 659 DAFTYNVVLSALSEAGRTEEAQNMLHKL 686



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 1/170 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D G  P    Y+TLI   CK   I +A  ++D M   G  L   T + +L  L + KR E
Sbjct: 408 DDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYE 467

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA GL++   +    PD  +Y  ++ AY  + N      +  +M E+KL     TY+ L+
Sbjct: 468 EAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLI 527

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G  R GR++EA   L  +++ G     +TY  ++ A  + G    A +F
Sbjct: 528 KGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQF 577



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 2/165 (1%)

Query: 144 ILSVLTRGKRMEEAWGL--MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           +LS L R         L     +  +R+ P+   +N L+  +C KG L      L  M+ 
Sbjct: 173 VLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQG 232

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             L  DA TY+ L+   CR G + EA  LL RM  DG +    TY  ++ A  RLG+  Q
Sbjct: 233 FGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQ 292

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           A K V        + D   +  L + L    + +EA  +  EM +
Sbjct: 293 ATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMER 337



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEA 157
            P    ++ L+   C    + +AL  +  M   GFGLS  A+T++ +L+   R   + EA
Sbjct: 201 HPNHYTFNLLVHTHCSKGTLADALSTLSTMQ--GFGLSPDAVTYNTLLNAHCRKGMLGEA 258

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  MK+  V+P    YN L++AY   G +   + V++ M       D  TY+ L  G
Sbjct: 259 RALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAG 318

Query: 218 ACRAGRVEEAFVLLRRM 234
            C+AG+V+EAF L   M
Sbjct: 319 LCQAGKVDEAFRLKDEM 335



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 27/304 (8%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           +S  + G  PDE     Y  ++ A   E + E    L ++        + +T+N +    
Sbjct: 474 QSPPQRGFMPDE---VSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGL 530

Query: 81  NSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           + +  L +    L  L +KG  P  + Y+ +I   CK   ++ A +  + M E  F    
Sbjct: 531 SRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDV 590

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T + +++ L    ++++A  L E   E     D+  YN L+   C  G++         
Sbjct: 591 VTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFAD 650

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           ME   L  DA TY+ ++     AGR EEA  +L ++ + G   L  +++     LL+   
Sbjct: 651 MEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESG--TLSQSFS---SPLLKPSS 705

Query: 259 YAQAVKFVMVCGGRDIKLD-----------TELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +A        G+D K +           +E +  L + L    +F EA  IL EM ++
Sbjct: 706 VDEAE------SGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQK 759

Query: 308 DLKM 311
            + +
Sbjct: 760 GMSV 763



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 105/247 (42%), Gaps = 33/247 (13%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           + G  PD+ T   Y+ +++A   E DLE      NK          N+F     T N+L 
Sbjct: 548 EKGLVPDDTT---YNIIIHAYCKEGDLENAFQFHNKMVE-------NSFKPDVVTCNTL- 596

Query: 85  VLSDLCRTLARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEG 132
            ++ LC    +LDK      +            Y+TLI  +CK   +D AL     M   
Sbjct: 597 -MNGLCLN-GKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEAR 654

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G    A T++ +LS L+   R EEA  ++  + E        +   L  +   +    A 
Sbjct: 655 GLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLKPSSVDE----AE 710

Query: 193 SGVLKKMEEEKL----GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           SG   K EEE +     + +  Y  LV G C +G+ +EA  +L  M+  G SV  STY  
Sbjct: 711 SGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSSTYIT 770

Query: 249 VMGALLR 255
           +M  L++
Sbjct: 771 LMEGLVK 777



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 19/181 (10%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF+ ++        + +A   +  M+   +SPD   YN LL A+C KG L     +L +M
Sbjct: 206 TFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARM 265

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           +++ +     TY+ LV    R G +++A  ++  M  +G      TY  +   L + G  
Sbjct: 266 KKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKV 325

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF----------ILKEMNKRDL 309
            +A +         +K + E  G+L   ++      +A F          +L+EM ++ +
Sbjct: 326 DEAFR---------LKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGV 376

Query: 310 K 310
           K
Sbjct: 377 K 377


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 2/173 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  LC+L  I EA  +   M + GF  S +T+  ++  L +   ++EA GL
Sbjct: 189 PDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGL 248

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E MK   + P++  Y+ L+   C  G+ +    +L+ M+++    +  TY  L+ G C+
Sbjct: 249 LEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCK 308

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGG 271
             ++ EA  +L RM   G       Y  ++  L   G Y +A  F+  MV GG
Sbjct: 309 ERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGG 361



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 115/258 (44%), Gaps = 5/258 (1%)

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF---PRKSAYDTLIGRL 113
           +L +  ++ C  T + F  I      +    D  R   +++ GF   P + AY T++  L
Sbjct: 72  MLERMKQEKCMVTEDIFLSICRGYGRVHRPLDAIRVFHKME-GFQLRPTQKAYLTILDIL 130

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR-MEEAWGLMEVMKEIRVSPD 172
            +   +  A+     M E G   S ++ + ++  L + K  ++ A  + + M      PD
Sbjct: 131 VEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPD 190

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
              Y  L+   C  GN++    + K+ME++   A   TY +L+ G C++  ++EA  LL 
Sbjct: 191 SYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLE 250

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            M  +       TY+ +M  L + G+ +QA++ + V   +    +   + +L + L    
Sbjct: 251 EMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKER 310

Query: 293 RFNEANFILKEMNKRDLK 310
           +  EA  IL  M  + LK
Sbjct: 311 KLREAVEILDRMRIQGLK 328



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 2/208 (0%)

Query: 99  GFPRKS-AYDTLIGRLCKLKK-IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           G P    + + LI  LCK K+ +D ALR+   M   G    + T+  +++ L R   + E
Sbjct: 150 GIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISE 209

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L + M++   S  +  Y  L+   C   NL    G+L++M+   +  +  TY +L+ 
Sbjct: 210 AKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMD 269

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+ G   +A  LL  M          TY+ ++  L +     +AV+ +     + +K 
Sbjct: 270 GLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKP 329

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           +  L+G + S L     + EA   + EM
Sbjct: 330 NAGLYGKIISGLCAAGSYQEAANFIDEM 357



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 2/155 (1%)

Query: 97  DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
            KGF      Y +LI  LC+   +DEA+ +++ M       +  T+  ++  L +G    
Sbjct: 219 QKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSS 278

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  L+EVM +    P++  Y+ L+   C +  L     +L +M  + L  +A  Y  ++
Sbjct: 279 QAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKII 338

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA-HV 249
            G C AG  +EA   +  MV  G S   ++++ HV
Sbjct: 339 SGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHV 373



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 7/161 (4%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y TLI  LCK +K+ EA+ ++D M   G   +A  +  I+S L      +EA  
Sbjct: 293 LPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAAN 352

Query: 160 LMEVMKEIRVSPDLTAY-------NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
            ++ M    +SP+  ++       N ++   C   +      +   M    +  +  T+D
Sbjct: 353 FIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFD 412

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            LV   C+ G + +A  +L  MV DG       +  V+G L
Sbjct: 413 CLVKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVIGGL 453


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 146/309 (47%), Gaps = 9/309 (2%)

Query: 4   LRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR 63
           L + P+ F I  +  V     K G   +  T   ++ LVN    E  LE    +L +   
Sbjct: 176 LVRYPSSFSISSAREVFDDMVKIGVSLNVQT---FNVLVNGYCLEGKLEDALGMLERMVS 232

Query: 64  DCCFNTAN-TFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKID 120
           +   N  N T+N I    +    LSDL   L  + K    P +  Y+ L+   CKL  + 
Sbjct: 233 EFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLK 292

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA ++V++M +        T++ +++ L     M E   LM+ MK +++ PD+  YN L+
Sbjct: 293 EAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLI 352

Query: 181 TAYCFKGNLTATS-GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD-DG 238
              CF+  L+  +  ++++ME + + A+  T++  +   C+  + E     ++ +VD  G
Sbjct: 353 DG-CFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHG 411

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            S    TY  ++ A L++G  + A++ +   G + IK++T    ++   L    + +EA+
Sbjct: 412 FSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAH 471

Query: 299 FILKEMNKR 307
            +L   +KR
Sbjct: 472 NLLNSAHKR 480



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 105/205 (51%), Gaps = 3/205 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           +T++  LCK +K+DEA  +++   + GF +  +T+  ++    R +++E+A  + + MK+
Sbjct: 455 NTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKK 514

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
           ++++P ++ +N L+   C  G          ++ E  L  D  T+++++LG C+ GRVE+
Sbjct: 515 VKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEK 574

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV-MVCGGRDIKLDTELFGSLG 285
           AF      +         T   ++  L + G   +A+ F   +   R++  DT  + ++ 
Sbjct: 575 AFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV--DTVTYNTMI 632

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
           S     ++  EA  +L EM ++ L+
Sbjct: 633 SAFCKDKKLKEAYDLLSEMEEKGLE 657



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 7/185 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S +++LIG LC   K + A+   D +AE G      TF+ I+    +  R+E+A+  
Sbjct: 519 PTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEF 578

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                +    PD    N LL   C +G           + EE+   D  TY+ ++   C+
Sbjct: 579 YNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEER-EVDTVTYNTMISAFCK 637

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG------RDI 274
             +++EA+ LL  M + G      TY   +  L+  G  ++  + +    G      RD+
Sbjct: 638 DKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFGSMKRDL 697

Query: 275 KLDTE 279
           +++TE
Sbjct: 698 QVETE 702



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 1/168 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P    Y TLI    K+  +  AL ++  M + G  ++ IT + IL  L + ++++EA
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEA 470

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+    +     D   Y  L+  +  +  +     +  +M++ K+     T+++L+ G
Sbjct: 471 HNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGG 530

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            C  G+ E A      + + G     ST+  ++    + G   +A +F
Sbjct: 531 LCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEF 578



 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 1/146 (0%)

Query: 113 LCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           LCK +K +   R V +++   GF    +T+H ++    +   +  A  +M  M +  +  
Sbjct: 390 LCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKM 449

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           +    N +L A C +  L     +L    +     D  TY  L++G  R  +VE+A  + 
Sbjct: 450 NTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMW 509

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLG 257
             M     +   ST+  ++G L   G
Sbjct: 510 DEMKKVKITPTVSTFNSLIGGLCHHG 535


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 100/211 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C +   D+A++++D MA      +  T+  ++  L R  ++EEA G+
Sbjct: 275 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 334

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P +  +N L+  YC +G + +   +L  ME+     + RTY+ L+ G CR
Sbjct: 335 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 394

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +  +AF+LLRR+VD+G      TY  ++    + G    A           ++ D   
Sbjct: 395 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 454

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           F +L   L  L R  +AN IL  M K+ + +
Sbjct: 455 FTALIDGLCKLGRLEQANGILGSMVKKGISL 485



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 122/315 (38%), Gaps = 39/315 (12%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P S  Y  L++       LE    L  +     C  +  T+  +   +  + +     + 
Sbjct: 240 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 299

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  +      P    Y  LI RLC+  KI+EA  V   M + G     ITF+ +++   +
Sbjct: 300 LDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK 359

Query: 151 GKRMEEAWGLMEVMKE-----------------IRVS------------------PDLTA 175
              +  A+ L+ VM++                  RVS                  PD   
Sbjct: 360 EGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVT 419

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           YN L+  +C +G L     +   M    L  D  T+ AL+ G C+ GR+E+A  +L  MV
Sbjct: 420 YNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMV 479

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT-ELFGSLGSKLIGLERF 294
             G S+   T+  ++    ++G  A+ V F+      +  L T   F      L    + 
Sbjct: 480 KKGISLDEVTFTALIDGHCKIG-KAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 538

Query: 295 NEANFILKEMNKRDL 309
           NEAN +L +M K  L
Sbjct: 539 NEANAMLGKMMKYGL 553



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 123/287 (42%), Gaps = 25/287 (8%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           ++ L+ R    +G  PD  T   Y+ LV+    E  L     +         FN+ N+  
Sbjct: 400 KAFLLLRRVVDNGLLPDRVT---YNILVDGFCKEGQLNMAFNI---------FNSMNSAG 447

Query: 75  FITNTENSLSVLSDLCRTLARLD-----------KGFP-RKSAYDTLIGRLCKLKKIDEA 122
              +     +++  LC+ L RL+           KG    +  +  LI   CK+ K  + 
Sbjct: 448 LEPDGFTFTALIDGLCK-LGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDV 506

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
             + + M E     +A TF+  L  L +  ++ EA  ++  M +  + P +  +  L+  
Sbjct: 507 CFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG 566

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           +C  G    +  +L++M++     +  TY  ++ G C  GRVEEA  +L  M   G S  
Sbjct: 567 HCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPN 626

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           + TYA ++ A ++ G   +A + V        + ++ ++ +L S  +
Sbjct: 627 HFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFV 673



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 1/190 (0%)

Query: 114 CKLKKIDEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           C+   + EA RV + M+ E     +++T+  ++  L    R+EEA+ L + M E    P 
Sbjct: 217 CRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 276

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
              Y  L+ A C  G       +L +M  +    +  TY  L+   CR G++EEA  + R
Sbjct: 277 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 336

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
           +M+  G      T+  ++    + G+   A + + V    + K +   +  L   L  + 
Sbjct: 337 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVS 396

Query: 293 RFNEANFILK 302
           +  +A  +L+
Sbjct: 397 KSYKAFLLLR 406


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS-AITFHPILSVLTRGKRMEEAWGLMEVM 164
           Y  +I   CK  ++D+AL +   M+ GG  +   +TF+ +L  L  G+RM EA+ L E M
Sbjct: 111 YSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYM 170

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    P++ +Y+ LL   C  G L     + ++M E+    D   Y + V G C+A RV
Sbjct: 171 AKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRV 230

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            EA    R+MV  G       ++ V+G L + G+  +A
Sbjct: 231 AEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEA 268



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 3/193 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++  LCK K++DEA  +V+ MA  G     +T+  ++  L +  +++ A  L
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M +  V PD      +L A    G +      L+ M+      D  TY+ L+ G C+
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR++EA   L +MV    +    +Y  ++ AL R G  A A         R +  DT L
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516

Query: 281 FGSLGSKLIGLER 293
           + SL   L GL R
Sbjct: 517 YHSL---LDGLAR 526



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 131/324 (40%), Gaps = 23/324 (7%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SLL+ L +   + ++ ++     K+G  P+  + +   D +  AG  R  E  R      
Sbjct: 149 SLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAG--RLDEACRLWEEMV 206

Query: 62  ARDCCFNTANTFNFITN--TENSLSVLSDLCRTLAR----------------LDKGFPRK 103
            + C  +     +F+T     N ++   D CR +                  L K    +
Sbjct: 207 EKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAE 266

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL--- 160
            A + +I  LC+   +DEA +  + M       SA  F+ ++  + + KR+ +   L   
Sbjct: 267 EAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQR 326

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M+ MKE    P+L  YN ++   C    L     ++ +M    L  D  TY ALV G C+
Sbjct: 327 MKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCK 386

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+++ A  LL  M  +G      T A ++ AL + G    A+  +     R    D   
Sbjct: 387 LGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVT 446

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L   L    R +EA   L +M
Sbjct: 447 YNTLLDGLCKAGRIDEAITFLAKM 470



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 116/288 (40%), Gaps = 34/288 (11%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P  VL+ +       F   P    Y+ +V+     + L+  + L+N+ A         T
Sbjct: 317 LPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVT 376

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           ++ + +    L  L   C  L  + K   FP      +++  L K  K+D AL  ++ M 
Sbjct: 377 YSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMK 436

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G     +T++ +L  L +  R++EA   +  M   + +PD+ +Y  ++TA C  G   
Sbjct: 437 ARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAA 496

Query: 191 ATSGVLKKMEEEKLGADARTYDAL-------------------------------VL-GA 218
               + ++M +  +  D   Y +L                               VL G 
Sbjct: 497 GAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGL 556

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           C+AG+ E+A  ++ RM D G      TY  V+  L +LG   +A + V
Sbjct: 557 CKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLV 604



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 84  SVLSDLCRTLARLDKGF-------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           SV+ D C   +R+D                P    +++L+  LC  +++ EA  + + MA
Sbjct: 112 SVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMA 171

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           + G   + I++  +L  L +  R++EA  L E M E    PDL AY   +T  C    + 
Sbjct: 172 KAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVA 231

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
                 +KM  +   ADA  +  ++   C+ G  EEA
Sbjct: 232 EACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEA 268



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 2/136 (1%)

Query: 108 TLIGRLCK-LKKIDEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           T++G + + L KI   +R+ D +  + G+  S  T++  L  L +    + A+   + M+
Sbjct: 6   TVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQ 65

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                PD   Y+ +L   C  G L     +L ++ E  +  +  TY  ++ G C+A RV+
Sbjct: 66  RRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVD 125

Query: 226 EAFVLLRRMVDDGQSV 241
           +A  + + M   G  V
Sbjct: 126 DALEIFKTMSSGGGCV 141


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 6/187 (3%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N + N       L    RT+  +D+    P    Y T+IG LC+ K++D A  ++  M
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            + G   + +T++ +++      R+E    L+E M E  + P+ T YN L+  YC + N+
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNM 616

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            +T+ + K M  +++  +  TY+ L+ G C+A  ++EA      M++ G  +  S+Y   
Sbjct: 617 KSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSY--- 673

Query: 250 MGALLRL 256
             AL+RL
Sbjct: 674 -NALIRL 679



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY ++I  LC   ++ +A+RVV+ M   G  L A  F  ++S   R   +  A    + M
Sbjct: 322 AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM 381

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++  ++ D   Y  L+   C  G L     VL++ME++ L  DA TY  L+ G C+ G++
Sbjct: 382 QKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKM 441

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EAF++  +MV    +    TY  +   L + G    A + +     + ++L+   + SL
Sbjct: 442 TEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
            + L       +A   + +M++  LK
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLK 527



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  ++   C L +++ A++++  MA  G  L+ + +  ++++L    ++ +A  +
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    V  D   +  +++ +C KG+L A      +M++  L AD  TY AL+ G CR
Sbjct: 343 VEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCR 402

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG ++EA  +L+ M D G  V   TY  ++    ++G   +A         + +  +   
Sbjct: 403 AGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           + +L   L        AN +L EM  + L++  
Sbjct: 463 YTALSDGLCKQGDVCAANELLHEMCSKGLELNI 495



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 6/153 (3%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  LC+  ++ EA RV+  M + G  + A+T+  ++    +  +M EA+ +   M 
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + RV+P++  Y  L    C +G++ A + +L +M  + L  +  TY++L+ G C+AG +E
Sbjct: 453 QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLE 512

Query: 226 EAFVLLRRMVDDGQSVLYS---TYAHVMGALLR 255
           +A   +R M+D  ++ L     TY  ++GAL +
Sbjct: 513 QA---MRTMIDMDEAGLKPDVYTYTTIIGALCQ 542



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 96/207 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + + T++   C+   +  A    D M + G     +T+  +++ L R   ++EA  +++ 
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M++  +  D   Y  L+  YC  G +T    V  KM ++++  +  TY AL  G C+ G 
Sbjct: 416 MEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           V  A  LL  M   G  +   TY  ++  L + G   QA++ ++      +K D   + +
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           +   L   +  + A+ +L+EM  + +K
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIK 562



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 19/212 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L   LCK   +  A  ++  M   G  L+  T++ +++ L +   +E+A   
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M E  + PD+  Y  ++ A C    L     +L++M ++ +     TY+ L+ G C 
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GRVE    LL  M++       +TY  +M                  C  +++K  TE+
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMK---------------QYCIEKNMKSTTEI 622

Query: 281 F-GSLGSKLIGLERFNEANFILKEMNK-RDLK 310
           + G L  +++  E  N  N ++K   K R++K
Sbjct: 623 YKGMLSQEVVPNE--NTYNILIKGHCKARNMK 652



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 1/189 (0%)

Query: 97  DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKG    +  Y  LI   CK+ K+ EA  V + M +     + +T+  +   L +   + 
Sbjct: 418 DKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVC 477

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L+  M    +  ++  YN L+   C  GNL      +  M+E  L  D  TY  ++
Sbjct: 478 AANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTII 537

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
              C++  ++ A  LL+ M+D G      TY  +M      G      + +     ++I 
Sbjct: 538 GALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIH 597

Query: 276 LDTELFGSL 284
            +T  + SL
Sbjct: 598 PNTTTYNSL 606



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 8/197 (4%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC+L  +DEA+++   + E     +  +++ +L  L    R+++A  L +   E+   PD
Sbjct: 233 LCRLP-LDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLFD---EMASPPD 284

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  ++  YC    L     +L +M    L  +   Y +++   C  G+V +A  ++ 
Sbjct: 285 VVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVE 344

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            MV  G  +  + +  VM    R G  A A  +      R +  D   + +L + L    
Sbjct: 345 DMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAG 404

Query: 293 RFNEANFILKEMNKRDL 309
              EA  +L+EM  + L
Sbjct: 405 ELKEAERVLQEMEDKGL 421



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 56/104 (53%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P ++ Y+ LI   CK + + EAL     M E GF L+A +++ ++ +L + K+  EA  L
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
            E M++ R++ +   YN+ +     + NL +T  +  ++ E  L
Sbjct: 693 FEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELVEVTL 736


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 100/211 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C +   D+A++++D MA      +  T+  ++  L R  ++EEA G+
Sbjct: 232 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 291

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P +  +N L+  YC +G + +   +L  ME+     + RTY+ L+ G CR
Sbjct: 292 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 351

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +  +AF+LLRR+VD+G      TY  ++    + G    A           ++ D   
Sbjct: 352 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 411

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           F +L   L  L R  +AN IL  M K+ + +
Sbjct: 412 FTALIDGLCKLGRLEQANGILGSMVKKGISL 442



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 122/315 (38%), Gaps = 39/315 (12%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P S  Y  L++       LE    L  +     C  +  T+  +   +  + +     + 
Sbjct: 197 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 256

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  +      P    Y  LI RLC+  KI+EA  V   M + G     ITF+ +++   +
Sbjct: 257 LDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK 316

Query: 151 GKRMEEAWGLMEVMKE-----------------IRVS------------------PDLTA 175
              +  A+ L+ VM++                  RVS                  PD   
Sbjct: 317 EGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVT 376

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           YN L+  +C +G L     +   M    L  D  T+ AL+ G C+ GR+E+A  +L  MV
Sbjct: 377 YNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMV 436

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT-ELFGSLGSKLIGLERF 294
             G S+   T+  ++    ++G  A+ V F+      +  L T   F      L    + 
Sbjct: 437 KKGISLDEVTFTALIDGHCKIG-KAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 495

Query: 295 NEANFILKEMNKRDL 309
           NEAN +L +M K  L
Sbjct: 496 NEANAMLGKMMKYGL 510



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 123/287 (42%), Gaps = 25/287 (8%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           ++ L+ R    +G  PD  T   Y+ LV+    E  L     +         FN+ N+  
Sbjct: 357 KAFLLLRRVVDNGLLPDRVT---YNILVDGFCKEGQLNMAFNI---------FNSMNSAG 404

Query: 75  FITNTENSLSVLSDLCRTLARLD-----------KGFP-RKSAYDTLIGRLCKLKKIDEA 122
              +     +++  LC+ L RL+           KG    +  +  LI   CK+ K  + 
Sbjct: 405 LEPDGFTFTALIDGLCK-LGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDV 463

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
             + + M E     +A TF+  L  L +  ++ EA  ++  M +  + P +  +  L+  
Sbjct: 464 CFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG 523

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           +C  G    +  +L++M++     +  TY  ++ G C  GRVEEA  +L  M   G S  
Sbjct: 524 HCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPN 583

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           + TYA ++ A ++ G   +A + V        + ++ ++ +L S  +
Sbjct: 584 HFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFV 630



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 1/190 (0%)

Query: 114 CKLKKIDEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           C+   + EA RV + M+ E     +++T+  ++  L    R+EEA+ L + M E    P 
Sbjct: 174 CRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS 233

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
              Y  L+ A C  G       +L +M  +    +  TY  L+   CR G++EEA  + R
Sbjct: 234 TRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFR 293

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
           +M+  G      T+  ++    + G+   A + + V    + K +   +  L   L  + 
Sbjct: 294 KMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVS 353

Query: 293 RFNEANFILK 302
           +  +A  +L+
Sbjct: 354 KSYKAFLLLR 363


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 6/187 (3%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N + N       L    RT+  +D+    P    Y T+IG LC+ K++D A  ++  M
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            + G   + +T++ +++      R+E    L+E M E  + P+ T YN L+  YC + N+
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNM 616

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            +T+ + K M  +++  +  TY+ L+ G C+A  ++EA      M++ G  +  S+Y   
Sbjct: 617 KSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSY--- 673

Query: 250 MGALLRL 256
             AL+RL
Sbjct: 674 -NALIRL 679



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY ++I  LC   ++ +A+RVV+ M   G  L A  F  ++S   R   +  A    + M
Sbjct: 322 AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM 381

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++  ++ D   Y  L+   C  G L     VL++ME++ L  DA TY  L+ G C+ G++
Sbjct: 382 QKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKM 441

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EAF++  +MV    +    TY  +   L + G    A + +     + ++L+   + SL
Sbjct: 442 TEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
            + L       +A   + +M++  LK
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLK 527



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  ++   C L +++ A++++  MA  G  L+ + +  ++++L    ++ +A  +
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    V  D   +  +++ +C KG+L A      +M++  L AD  TY AL+ G CR
Sbjct: 343 VEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCR 402

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG ++EA  +L+ M D G  V   TY  ++    ++G   +A         + +  +   
Sbjct: 403 AGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           + +L   L        AN +L EM  + L++  
Sbjct: 463 YTALSDGLCKQGDVCAANELLHEMCSKGLELNI 495



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 6/153 (3%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  LC+  ++ EA RV+  M + G  + A+T+  ++    +  +M EA+ +   M 
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + RV+P++  Y  L    C +G++ A + +L +M  + L  +  TY++L+ G C+AG +E
Sbjct: 453 QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLE 512

Query: 226 EAFVLLRRMVDDGQSVLYS---TYAHVMGALLR 255
           +A   +R M+D  ++ L     TY  ++GAL +
Sbjct: 513 QA---MRTMIDMDEAGLKPDVYTYTTIIGALCQ 542



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 96/207 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + + T++   C+   +  A    D M + G     +T+  +++ L R   ++EA  +++ 
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M++  +  D   Y  L+  YC  G +T    V  KM ++++  +  TY AL  G C+ G 
Sbjct: 416 MEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           V  A  LL  M   G  +   TY  ++  L + G   QA++ ++      +K D   + +
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           +   L   +  + A+ +L+EM  + +K
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIK 562



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 19/212 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L   LCK   +  A  ++  M   G  L+  T++ +++ L +   +E+A   
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M E  + PD+  Y  ++ A C    L     +L++M ++ +     TY+ L+ G C 
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GRVE    LL  M++       +TY  +M                  C  +++K  TE+
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMK---------------QYCIEKNMKSTTEI 622

Query: 281 F-GSLGSKLIGLERFNEANFILKEMNK-RDLK 310
           + G L  +++  E  N  N ++K   K R++K
Sbjct: 623 YKGMLSQEVVPNE--NTYNILIKGHCKARNMK 652



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 1/189 (0%)

Query: 97  DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKG    +  Y  LI   CK+ K+ EA  V + M +     + +T+  +   L +   + 
Sbjct: 418 DKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVC 477

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L+  M    +  ++  YN L+   C  GNL      +  M+E  L  D  TY  ++
Sbjct: 478 AANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTII 537

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
              C++  ++ A  LL+ M+D G      TY  +M      G      + +     ++I 
Sbjct: 538 GALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIH 597

Query: 276 LDTELFGSL 284
            +T  + SL
Sbjct: 598 PNTTTYNSL 606



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 8/197 (4%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC+L  +DEA+++   + E     +  +++ +L  L    R+++A  L +   E+   PD
Sbjct: 233 LCRLP-LDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLFD---EMASPPD 284

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  ++  YC    L     +L +M    L  +   Y +++   C  G+V +A  ++ 
Sbjct: 285 VVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVE 344

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            MV  G  +  + +  VM    R G  A A  +      R +  D   + +L + L    
Sbjct: 345 DMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAG 404

Query: 293 RFNEANFILKEMNKRDL 309
              EA  +L+EM  + L
Sbjct: 405 ELKEAERVLQEMEDKGL 421



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 56/104 (53%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P ++ Y+ LI   CK + + EAL     M E GF L+A +++ ++ +L + K+  EA  L
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
            E M++ R++ +   YN+ +     + NL +T  +  ++ E  L
Sbjct: 693 FEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELVEVTL 736


>gi|326500578|dbj|BAK06378.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 546

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 8/211 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y TLI  +C++++ D+A+ ++D M + G   + +T +PI+  L    R  +A+ L
Sbjct: 224 PTVVSYGTLIKAVCRVQQPDQAVSLLDEMRKEGIEANLVTCNPIVHALAHAGRFRDAYNL 283

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E      V+P+++ +N L+ AYC  G+L   SGVLK M    +   A+TY+   +   +
Sbjct: 284 LEKFPLYGVAPNISTFNSLVLAYCKYGDLAGASGVLKAMMGRGILPTAKTYNYFFVFFAK 343

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL---RLGYYAQAVKFVMVCG-GRDIKL 276
            G VE    L  +MV++G +   +TY  ++  L    RL    Q +K +   G   D+  
Sbjct: 344 TGNVELGMNLYNKMVNNGYAPDQTTYNLLVKMLCEANRLELVVQMIKEMRANGFESDLAT 403

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            T L   L        RF EA    K+M +R
Sbjct: 404 STMLIHLLCRS----HRFEEACAEFKDMFRR 430



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 95/234 (40%), Gaps = 15/234 (6%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S +++L+   CK   +  A  V+  M   G   +A T++       +   +E    L
Sbjct: 294 PNISTFNSLVLAYCKYGDLAGASGVLKAMMGRGILPTAKTYNYFFVFFAKTGNVELGMNL 353

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M     +PD T YN L+   C    L     ++K+M      +D  T   L+   CR
Sbjct: 354 YNKMVNNGYAPDQTTYNLLVKMLCEANRLELVVQMIKEMRANGFESDLATSTMLIHLLCR 413

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           + R EEA    + M   G    Y TY  +M  L RLG      K   +   R +   T+L
Sbjct: 414 SHRFEEACAEFKDMFRRGHVPQYITYRMLMKELKRLGLVELEEKLTDLM--RSVPHSTKL 471

Query: 281 FGSL----------GSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINVK 324
            GS             KLI LE+    + +LKE   +D K   KL+D  E +V+
Sbjct: 472 PGSYREKEGDNAKEKRKLI-LEKAQAVSNVLKEC--KDPKELHKLKDDEETDVQ 522



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 1/166 (0%)

Query: 110 IGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +G LCK      A ++V     EG       T++ +L   +  +RM++   L   M    
Sbjct: 162 VGALCKEGHPRPAAKLVKRCRREGELAPDERTYNMLLDGWSTARRMDKVGKLWAEMCVAG 221

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V P + +Y  L+ A C          +L +M +E + A+  T + +V     AGR  +A+
Sbjct: 222 VRPTVVSYGTLIKAVCRVQQPDQAVSLLDEMRKEGIEANLVTCNPIVHALAHAGRFRDAY 281

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
            LL +    G +   ST+  ++ A  + G  A A   +    GR I
Sbjct: 282 NLLEKFPLYGVAPNISTFNSLVLAYCKYGDLAGASGVLKAMMGRGI 327


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 6/187 (3%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N + N       L    RT+  +D+    P    Y T+IG LC+ K++D A  ++  M
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            + G   + +T++ +++      R+E    L+E M E  + P+ T YN L+  YC + N+
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNM 616

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            +T+ + K M  +++  +  TY+ L+ G C+A  ++EA      M++ G  +  S+Y   
Sbjct: 617 KSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSY--- 673

Query: 250 MGALLRL 256
             AL+RL
Sbjct: 674 -NALIRL 679



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY ++I  LC   ++ +A+RVV+ M   G  L A  F  ++S   R   +  A    + M
Sbjct: 322 AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM 381

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++  ++ D   Y  L+   C  G L     VL++ME++ L  DA TY  L+ G C+ G++
Sbjct: 382 QKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKM 441

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EAF++  +MV    +    TY  +   L + G    A + +     + ++L+   + SL
Sbjct: 442 TEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
            + L       +A   + +M++  LK
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLK 527



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  ++   C L +++ A++++  MA  G  L+ + +  ++++L    ++ +A  +
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    V  D   +  +++ +C KG+L A      +M++  L AD  TY AL+ G CR
Sbjct: 343 VEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCR 402

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG ++EA  +L+ M D G  V   TY  ++    ++G   +A         + +  +   
Sbjct: 403 AGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           + +L   L        AN +L EM  + L++  
Sbjct: 463 YTALSDGLCKQGDVCAANELLHEMCSKGLELNI 495



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 6/153 (3%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  LC+  ++ EA RV+  M + G  + A+T+  ++    +  +M EA+ +   M 
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + RV+P++  Y  L    C +G++ A + +L +M  + L  +  TY++L+ G C+AG +E
Sbjct: 453 QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLE 512

Query: 226 EAFVLLRRMVDDGQSVLYS---TYAHVMGALLR 255
           +A   +R M+D  ++ L     TY  ++GAL +
Sbjct: 513 QA---MRTMIDMDEAGLKPDVYTYTTIIGALCQ 542



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 96/207 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + + T++   C+   +  A    D M + G     +T+  +++ L R   ++EA  +++ 
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M++  +  D   Y  L+  YC  G +T    V  KM ++++  +  TY AL  G C+ G 
Sbjct: 416 MEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGD 475

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           V  A  LL  M   G  +   TY  ++  L + G   QA++ ++      +K D   + +
Sbjct: 476 VCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           +   L   +  + A+ +L+EM  + +K
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIK 562



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 19/212 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L   LCK   +  A  ++  M   G  L+  T++ +++ L +   +E+A   
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M E  + PD+  Y  ++ A C    L     +L++M ++ +     TY+ L+ G C 
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GRVE    LL  M++       +TY  +M                  C  +++K  TE+
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMK---------------QYCIEKNMKSTTEI 622

Query: 281 F-GSLGSKLIGLERFNEANFILKEMNK-RDLK 310
           + G L  +++  E  N  N ++K   K R++K
Sbjct: 623 YKGMLSQEVVPNE--NTYNILIKGHCKARNMK 652



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 1/189 (0%)

Query: 97  DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKG    +  Y  LI   CK+ K+ EA  V + M +     + +T+  +   L +   + 
Sbjct: 418 DKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVC 477

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L+  M    +  ++  YN L+   C  GNL      +  M+E  L  D  TY  ++
Sbjct: 478 AANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTII 537

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
              C++  ++ A  LL+ M+D G      TY  +M      G      + +     ++I 
Sbjct: 538 GALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIH 597

Query: 276 LDTELFGSL 284
            +T  + SL
Sbjct: 598 PNTTTYNSL 606



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 8/197 (4%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC+L  +DEA+++   + E     +  +++ +L  L    R+++A  L +   E+   PD
Sbjct: 233 LCRLP-LDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLFD---EMASPPD 284

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  ++  YC    L     +L +M    L  +   Y +++   C  G+V +A  ++ 
Sbjct: 285 VVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVE 344

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            MV  G  +  + +  VM    R G  A A  +      R +  D   + +L + L    
Sbjct: 345 DMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAG 404

Query: 293 RFNEANFILKEMNKRDL 309
              EA  +L+EM  + L
Sbjct: 405 ELKEAERVLQEMEDKGL 421



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 56/104 (53%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P ++ Y+ LI   CK + + EAL     M E GF L+A +++ ++ +L + K+  EA  L
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
            E M++ R++ +   YN+ +     + NL +T  +  ++ E  L
Sbjct: 693 FEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDELVEVTL 736


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 123/281 (43%), Gaps = 2/281 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +PT   Y+ +++    E D+E    L  +           T+N + +    +  L D   
Sbjct: 130 KPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVY 189

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               +      P    Y+TLI   CK  K+ + L     M + G   + +++  ++    
Sbjct: 190 FFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFC 249

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   M++A      M+ + + P+   Y  L+ AYC  GNL+    +  +M +  +  +  
Sbjct: 250 KEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVV 309

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY AL+ G C   R++EA  L  +MV  G     ++Y  ++   ++     +A++ +   
Sbjct: 310 TYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEM 369

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            GR IK D  L+G+    L GLE+   A  ++ EM ++ +K
Sbjct: 370 KGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIK 410



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP+  + + L+ +  +L K D   R    M   G   +  T++ ++  + +   +E A G
Sbjct: 95  FPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASG 154

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L E MK   + PD   YN ++  Y   G L  T    ++M+      D  TY+ L+   C
Sbjct: 155 LFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFC 214

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           + G++ +     R M   G      +Y+ ++ A  +     QA+KF
Sbjct: 215 KFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKF 260



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 70/155 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +L+   CK+  + +A R+ D M++ G   + +T+  ++  L   +R++EA  L
Sbjct: 271 PNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEEL 330

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    V P+L +Y  L+  +    N+     +L +M+   +  D   Y   +   C 
Sbjct: 331 FGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCG 390

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             ++E A V++  M + G       Y  +M A  +
Sbjct: 391 LEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFK 425



 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 21/176 (11%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           GFG+    F  + SVL      EEA      MK  RV P   + N LL  +     L  T
Sbjct: 62  GFGV----FDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKF---ARLGKT 114

Query: 193 SGVLKKMEEEKLGADAR----TYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
            G +K+  ++ +GA ++    TY+ ++   C+ G +E A  L   M   G    +V Y++
Sbjct: 115 DG-MKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNS 173

Query: 246 YAHVMGALLRLG---YYAQAVKFVMVCGGRDIKLDT--ELFGSLGSKLIGLERFNE 296
                G + RL    Y+ + +K  M C    I  +T    F   G    GLE F E
Sbjct: 174 MIDGYGKVGRLDDTVYFFEEMK-SMSCEPDVITYNTLINCFCKFGKLPKGLEFFRE 228



 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 109 LIGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           LI  LCK K + +A+     I  + G   +A  +  ++  L +  ++E A  L E M + 
Sbjct: 454 LIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQK 513

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
            + PD TAY  L+     +GN+     +  KM E  + + AR  D
Sbjct: 514 GLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVESGARFGD 558


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 1/209 (0%)

Query: 97  DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG  P    +  L+  LCK  ++ +A  +V++MAE G   +A+ F+ I+  L +  R  
Sbjct: 3   EKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSA 62

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA+G +E M+ + VSP +  YN L+  +C +  L     +L++M       +  TY+  +
Sbjct: 63  EAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFL 122

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G C+ G+V++A  L R M +    +    Y  ++  L + G  A+A   +         
Sbjct: 123 HGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCV 182

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEM 304
                + ++ S L    R NEA+ + K M
Sbjct: 183 PKPGCYNAILSWLCKGSRINEAHKLFKRM 211



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T +  LCK  K+D+AL +   M E    L    +  ++  L +  ++ EA+ L
Sbjct: 113 PNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSL 172

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+     P    YN +L+  C    +     + K+M    +  D  T+  +V G CR
Sbjct: 173 LDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCR 232

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             R+++A +LL++M   G +     Y  ++ AL R G  ++A + +
Sbjct: 233 GHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLL 278



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           MAE G   + +TF  ++  L +  R+ +A+ L+EVM E    P+   +N ++ A C +G 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                G ++ M    +     TY+ L+ G C+  ++  A  +L+ M   G    + TY  
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  L + G    A+        + I+LD   + +L   L    +  EA  +L EM
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEM 176



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 2/141 (1%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y  L++       L     LL++     C      +N I +     S +++  +   R+ 
Sbjct: 153 YTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMT 212

Query: 98  KG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
                P    +  ++   C+  +ID+AL ++  M   G     + ++ ++  L R  R+ 
Sbjct: 213 GSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVS 272

Query: 156 EAWGLMEVMKEIRVSPDLTAY 176
           EA+ L++ M    +SP+   Y
Sbjct: 273 EAYRLLQEMISRGLSPNSRTY 293


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS-AITFHPILSVLTRGKRMEEAWGLMEVM 164
           Y  +I   CK  ++D+AL +   M+ GG  +   +TF+ +L  L  G+RM EA+ L E M
Sbjct: 111 YSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYM 170

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    P++ +Y+ LL   C  G L     + ++M E+    D   Y + V G C+A RV
Sbjct: 171 AKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRV 230

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            EA    R+MV  G       ++ V+G L + G+  +A
Sbjct: 231 AEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEA 268



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 3/193 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++  LCK K++DEA  +V+ MA  G     +T+  ++  L +  +++ A  L
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M +  V PD      +L A    G +      L+ M+      D  TY+ L+ G C+
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR++EA   L +MV    +    +Y  ++ AL R G  A A         R +  DT L
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516

Query: 281 FGSLGSKLIGLER 293
           + SL   L GL R
Sbjct: 517 YHSL---LDGLAR 526



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 116/288 (40%), Gaps = 34/288 (11%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P  VL+ +       F   P    Y+ +V+     + L+  + L+N+ A         T
Sbjct: 317 LPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVT 376

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           ++ + +    L  L   C  L  + K   FP      +++  L K  K+D AL  ++ M 
Sbjct: 377 YSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMK 436

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G     +T++ +L  L +  R++EA   +  M   + +PD+ +Y  ++TA C  G   
Sbjct: 437 ARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAA 496

Query: 191 ATSGVLKKMEEEKLGADARTYDAL--------------------------------VLGA 218
               + ++M +  +  D   Y +L                                V G 
Sbjct: 497 GAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGL 556

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           C+AG+ E+A  ++ RM D G      TY +V+  L +LG   +A + V
Sbjct: 557 CKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLV 604



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 131/324 (40%), Gaps = 23/324 (7%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SLL+ L +   + ++ ++     K+G  P+  + +   D +  AG  R  E  R      
Sbjct: 149 SLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAG--RLDEACRLWEEMV 206

Query: 62  ARDCCFNTANTFNFITN--TENSLSVLSDLCRTLAR----------------LDKGFPRK 103
            + C  +     +F+T     N ++   D CR +                  L K    +
Sbjct: 207 EKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAE 266

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL--- 160
            A + +I  LC+   +DEA +  + M       SA  F+ ++  + + KR+ +   L   
Sbjct: 267 EAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQR 326

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M+ MKE    P+L  YN ++   C    L     ++ +M    L  D  TY ALV G C+
Sbjct: 327 MKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCK 386

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+++ A  LL  M  +G      T A ++ AL + G    A+  +     R    D   
Sbjct: 387 LGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVT 446

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L   L    R +EA   L +M
Sbjct: 447 YNTLLDGLCKAGRIDEAITFLAKM 470



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 84  SVLSDLCRTLARLDKGF-------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           SV+ D C   +R+D                P    +++L+  LC  +++ EA  + + MA
Sbjct: 112 SVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMA 171

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           + G   + I++  +L  L +  R++EA  L E M E    PDL AY   +T  C    + 
Sbjct: 172 KAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVA 231

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
                 +KM  +   ADA  +  ++   C+ G  EEA
Sbjct: 232 EACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEA 268



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 2/136 (1%)

Query: 108 TLIGRLCK-LKKIDEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           T++G + + L KI   +R+ D +  + G+  S  T++  L  L +    + A+   + M+
Sbjct: 6   TVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQ 65

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                PD   Y+ +L   C  G L     +L ++ E  +  +  TY  ++ G C+A RV+
Sbjct: 66  RRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVD 125

Query: 226 EAFVLLRRMVDDGQSV 241
           +A  + + M   G  V
Sbjct: 126 DALEIFKTMSAGGGCV 141



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 32/229 (13%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
            +K G FPD  T A   + ++ AG       + +L   +AR       +T + +T     
Sbjct: 400 MSKEGVFPDSFTDASILNALSKAGKVD--YALSHLETMKAR------GSTPDLVTYN--- 448

Query: 83  LSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
            ++L  LC+   R+D+              P   +Y  +I  LC+  +   A  +   M 
Sbjct: 449 -TLLDGLCKA-GRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMV 506

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           + G     + +H +L  L R    + A   +E++K     PD   +  ++   C  G   
Sbjct: 507 KRGVLPDTVLYHSLLDGLARNGLEDLA---LELLKTSLCKPDFVMHKMVVDGLCKAGKAE 563

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
               V+++M +    ADA TY  +V G  + G+V++A    R++VDD  
Sbjct: 564 DACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKA----RQLVDDAS 608



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 35/169 (20%)

Query: 98  KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +G+P     Y  ++  LCK  ++D+A  ++  + E G  L+ IT+  ++    +  R+++
Sbjct: 67  RGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDD 126

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A   +E+ K                       ++A  G +          D  T+++L+ 
Sbjct: 127 A---LEIFK----------------------TMSAGGGCV---------PDVVTFNSLLK 152

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           G C   R+ EAFVL   M   G      +Y+ ++  L + G   +A + 
Sbjct: 153 GLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRL 201


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 22/279 (7%)

Query: 39   DDLVNAAGHERDLE-TVRYLLNKRARDCCFNTANTFN----FITNTEN---SLSVLSDLC 90
            D +V+   H RD+E T+++      R    +TA  FN    F+ N      +  +L    
Sbjct: 1629 DIVVDVLNHARDVEPTIQFFEWCHGRHGYTHTAFAFNRLLEFLVNKRQYKRAHQMLIAES 1688

Query: 91   RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
            +  +     F     Y T++   C+  +  +AL +++ M +     +A  ++ IL+ L +
Sbjct: 1689 KPSSFQANAF----TYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCK 1744

Query: 151  GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + +EA  L+  M     +PD+  YN L+ A C  G L    G+++ M+  +   D  T
Sbjct: 1745 HGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVT 1804

Query: 211  YDALVLGACRAG----RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            Y+ L+ G CR G    RVE AF L   MVD G +    TY  V+ ALLR+    QA K +
Sbjct: 1805 YNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVL 1864

Query: 267  MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
             +        D   +  L      + RF +A  + K M+
Sbjct: 1865 DLMHENGCAFDLVTYNML------INRFAKAGMMDKAMD 1897



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 4/166 (2%)

Query: 106  YDTLIGRLCKLK----KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
            Y+TLI  LC+      +++ A R+ + M + G   +++T+  ++  L R K  E+A  ++
Sbjct: 1805 YNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVL 1864

Query: 162  EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
            ++M E   + DL  YN L+  +   G +     +  +M       D  TY+++V G C+A
Sbjct: 1865 DLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKA 1924

Query: 222  GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
            G+VEEA  L   M   G      TY  +  A L+ G    A  +++
Sbjct: 1925 GKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLV 1970



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 2/163 (1%)

Query: 96   LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
            +DKG  P    Y  +I  L ++K  ++A +V+D+M E G     +T++ +++   +   M
Sbjct: 1833 VDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMM 1892

Query: 155  EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            ++A  L   M      PD+  YN ++  +C  G +   + +  +M+   +  + RTY ++
Sbjct: 1893 DKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSI 1952

Query: 215  VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
                 +AGR+++A   L  M  +G  V   +Y  ++  + +LG
Sbjct: 1953 TDACLKAGRMQDAHAYLVEMRKEGL-VDAISYVALISTICKLG 1994



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 4/148 (2%)

Query: 27   GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
            G  PD  T   Y+ +V+       +E    L  +      F    T+  IT+       +
Sbjct: 1906 GCIPDVVT---YNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRM 1962

Query: 87   SDLCRTLARLDK-GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
             D    L  + K G     +Y  LI  +CKL K     +++  M E GF  + +TF+ + 
Sbjct: 1963 QDAHAYLVEMRKEGLVDAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVF 2022

Query: 146  SVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
              L++    ++A  +++ +++   SP L
Sbjct: 2023 EALSKESNTDDAKIMIQELRQQHSSPPL 2050


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 13/250 (5%)

Query: 67  FNTANTFNFITNTE--NSLSV---LSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKI 119
            N A+  +F+T T+  + LS    L D  + L  +   +  P  +    ++  LC   ++
Sbjct: 141 MNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRV 200

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM--EVMKEIRVSPDLTAYN 177
           D+A  +V+ M   G   +AIT+  ++  L + +R++EA  L+  EV +    +PD+  Y+
Sbjct: 201 DDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRR-GFTPDIVTYS 259

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++   C  G L     +    EE      A TY++L+ G CRAG ++EA  LL +MVDD
Sbjct: 260 TVIDGLCKAGRLRDAVDIF---EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDD 316

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
             +    TY  +M A  ++G    A +         +  D   F SL   L G  R  +A
Sbjct: 317 NCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDA 376

Query: 298 NFILKEMNKR 307
             +L+E+ +R
Sbjct: 377 LELLEEITRR 386



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 121/293 (41%), Gaps = 10/293 (3%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           L+    T+ G  PD  T +   D +  AG  RD   +   ++      C  TA T+N + 
Sbjct: 241 LLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS------CAPTAITYNSLI 294

Query: 78  NTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
                   + +  R L ++  D   P    Y TL+   CK+ ++D+A  +   M      
Sbjct: 295 GGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLS 354

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
              +TF  ++  L    RME+A  L+E +      P +  YN ++  YC    +     +
Sbjct: 355 PDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEEL 414

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST--YAHVMGAL 253
           +          +  TY+ LV G CRAGR ++A   L ++  +G     S   YA ++ AL
Sbjct: 415 VADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDAL 474

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            R G    AV+F      R        F ++   L    +  +A+ +L+EM K
Sbjct: 475 CRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIK 527



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 4/213 (1%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G  P     +T++  LC  +    A+ + D MAE G  ++  T++ ++  L + + ++
Sbjct: 39  DRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELG-AVNHTTYYNLIHPLCKARLLD 97

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA GL+  MK   ++P    +N ++   C  G L    GV ++M +     D  TY  LV
Sbjct: 98  EAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLV 156

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G  +AGR+ +A  +L+ MV        +T   V+ +L        A + V     R + 
Sbjct: 157 HGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMA 216

Query: 276 LDTELFGSLGSKLIGLERFNEA-NFILKEMNKR 307
            +   + +L   L   ER +EA   +L E+ +R
Sbjct: 217 ANAITYSALVDGLCKCERLDEAVALLLGEVTRR 249



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 52/269 (19%), Positives = 99/269 (36%), Gaps = 39/269 (14%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT+  Y+ L+       D++    LL K   D C     T+  + +    +  L D    
Sbjct: 285 PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYEL 344

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
             ++  +K  P    + +L+  LC   ++++AL +++ +   G   +  T++ ++    +
Sbjct: 345 FQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK 404

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-------- 202
             ++ +A  L+   +     P+   YN L+   C  G        L ++  E        
Sbjct: 405 SNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSV 464

Query: 203 --------KLGADARTYDAL---------------------VLGACRAGRVEEAFVLLRR 233
                    L  D RT DA+                     V   C+A + ++A  LL  
Sbjct: 465 AMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEE 524

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           M+  G +    T   V+ A  R G   +A
Sbjct: 525 MIKYGHTPGPGTCDAVVSAYCRAGMIQKA 553



 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 73/150 (48%), Gaps = 22/150 (14%)

Query: 75  FITNTENSLSVLSDLCRT------LARLDK----GFPRKSA---YDTLIGRLCKLKKIDE 121
           F+ NT     +++  CR       L  LD+    G P  ++   Y  ++  LC+  + D+
Sbjct: 423 FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD 482

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A++  + M + G+  +A TF  ++  L +  + ++A  L+E M +   +P     + +++
Sbjct: 483 AVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVS 542

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTY 211
           AYC        +G+++K +E  L ++ R Y
Sbjct: 543 AYC-------RAGMIQKADE--LASELRLY 563


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 18/226 (7%)

Query: 96  LDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           LD+GF  K+A            Y  LI  LCK  K+DEA  + D M E G   + +TF  
Sbjct: 187 LDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTT 246

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEI---RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++    +  +++ A   ME+ K+I    +SPDL  YN L+  +C KG+L  T  ++ +M 
Sbjct: 247 LIDGHCKNGKLDLA---MEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E AF   ++M+++   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSV 363

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D+  +  + ++       N  + +LKEM +
Sbjct: 364 DAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQR 409



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    K+  +DE  R+ + M   G      T+  +++ L +  +M+EA  L
Sbjct: 169 PSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  + P+   +  L+  +C  G L     + K++  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++   L+  M   G      TY  ++    + G    A ++       +I+LD  +
Sbjct: 289 KGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVV 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCKEGRSVDAEKMLREMLSVGLK 378



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 7/217 (3%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           SGA PD  T   Y  L+N    E  ++    L ++           TF  + +       
Sbjct: 200 SGAQPDVYT---YSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGK 256

Query: 86  LSDLCRTLAR--LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           L DL   + +  L +G  P    Y+TLI   CK   + +   ++D M+  G     IT+ 
Sbjct: 257 L-DLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M E  +  D   Y  L++  C +G       +L++M   
Sbjct: 316 TLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
            L  D+ TY  ++   C+ G V     LL+ M  DG 
Sbjct: 376 GLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGH 412



 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 59/149 (39%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L+R  K +        ++  L KLK           + E G+  S   F+ ++    
Sbjct: 88  CFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFC 147

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + ++N L+  Y   G L     +   M       D  
Sbjct: 148 KEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVY 207

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G C+  +++EA  L   M++ G
Sbjct: 208 TYSVLINGLCKESKMDEAHELFDEMLEKG 236


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 99/209 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  +I RLCK+K +DEAL + + M   G     +T+  ++  L + +R+  AW L
Sbjct: 308 PDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWEL 367

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M       D+  Y   L A C    +     ++KK++++ +  +  TY+ L+ G C+
Sbjct: 368 LDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCK 427

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR E A V+ + ++  G  V   TY  ++  L   G + +A+  +          D   
Sbjct: 428 EGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVT 487

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + ++   L   +  ++A  +L+EM  R L
Sbjct: 488 YETIIRALFKNDENHKAEKLLREMIARGL 516



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 92/251 (36%), Gaps = 52/251 (20%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y T+I  LCK K + EA  +   M         +TF  ++       + +EA+GL   M 
Sbjct: 191 YSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMV 250

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK---------------------------- 197
              ++PD+  +N L+ A C +G+   T  VL                             
Sbjct: 251 LTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDV 310

Query: 198 -------------KMEEEKLG-----------ADARTYDALVLGACRAGRVEEAFVLLRR 233
                        KM +E L             D  TY +L+ G C++ R+  A+ LL +
Sbjct: 311 HSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQ 370

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
           M   GQ     TY   + AL +     +AV  V     + I+ +   +  L   L    R
Sbjct: 371 MHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGR 430

Query: 294 FNEANFILKEM 304
           F  A  I +++
Sbjct: 431 FENAQVIFQDL 441



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 8/191 (4%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN + N    L  +      LA++ K G+ P      TLI  LC   K+ EAL   D +
Sbjct: 85  TFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHV 144

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR---VSPDLTAYNYLLTAYCFK 186
              GF L+ +++  +++ L +   M E    ++V+++I    V+ ++  Y+ ++ + C +
Sbjct: 145 IARGFRLNEVSYGILINGLCK---MGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKE 201

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             +T    +  +M  +K+  D  T+ AL+ G C  G+ +EAF L   MV    +    T+
Sbjct: 202 KLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTF 261

Query: 247 AHVMGALLRLG 257
             ++ AL + G
Sbjct: 262 NILVDALCKEG 272



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 21/222 (9%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI  LCK+ +   AL+V+  +       + + +  I+  L + K + EA+ L   M
Sbjct: 155 SYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQM 214

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
              +VSPD+  ++ L+  +C  G      G+  +M    +  D  T++ LV   C+ G  
Sbjct: 215 IVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGST 274

Query: 225 EEAFVLLRRM------VDDGQSVL-----------YSTYAHVMGALLRLGYYAQAVKFV- 266
           +E   +L  M      V+  + V              +Y  ++  L ++    +A+    
Sbjct: 275 KETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFN 334

Query: 267 -MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            M C G  I  D   + SL   L   ER + A  +L +M+ R
Sbjct: 335 EMRCKG--ITPDKVTYSSLIDGLCKSERISHAWELLDQMHAR 374



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 21/223 (9%)

Query: 101 PRKSAYDTLIGRLCK-----------------LKKIDEALRVVDIMAEGGFGLSAITFHP 143
           P    ++ L+  LCK                 + ++++A  V +I+ +        ++  
Sbjct: 256 PDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTI 315

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           I+  L + K ++EA  L   M+   ++PD   Y+ L+   C    ++    +L +M    
Sbjct: 316 IIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARG 375

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY--AQ 261
             AD  TY + +   C+  +V++A  L++++ D G     +TY  ++  L + G +  AQ
Sbjct: 376 QPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQ 435

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +   ++  G  + + T      G  L GL  F+EA  +L++M
Sbjct: 436 VIFQDLLIKGYKVTVWTYNIMINGLCLEGL--FDEAMTLLEKM 476



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 2/170 (1%)

Query: 137 SAITFHPILSVLTRGKRMEE--AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
           S I F+ IL  L +        A  L   ++   ++P +  +N ++  YC  G +     
Sbjct: 45  SIIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFS 104

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           VL K+ +     D  T   L+ G C  G+V EA      ++  G  +   +Y  ++  L 
Sbjct: 105 VLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLC 164

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           ++G    A++ +    G+ +  +  ++ ++   L   +   EA  +  +M
Sbjct: 165 KMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQM 214


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 3/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  ++   C+ +K  EA  ++  M E G     +T   +++   +  RM +A  +
Sbjct: 287 PSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRV 346

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E+MK     P++  YN L+  +C +G +     +L KM    +  DA TY+ L+ G C 
Sbjct: 347 LELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCI 406

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +E AF LLR M  DG      TY  ++ AL + G   QA         R IK +   
Sbjct: 407 DGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVT 466

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           F SL   + GL +  +A+   K + K
Sbjct: 467 FNSL---INGLCKSGKADIAWKFLEK 489



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 4/204 (1%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +I   CK  ++ +ALRV+++M   G   +  T++ ++       ++ +A  L+  M+   
Sbjct: 330 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACG 389

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V+PD   YN L+   C  G++ +   +L+ ME + L AD  TY+AL+   C+ GR ++A 
Sbjct: 390 VNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQAC 449

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGS 286
            L   +   G      T+  ++  L + G    A KF+  MV  G     DT  + S   
Sbjct: 450 SLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG--CTPDTYTYSSFIE 507

Query: 287 KLIGLERFNEANFILKEMNKRDLK 310
            L  ++   E    + EM ++D+K
Sbjct: 508 HLCKMKGSQEGLSFIGEMLQKDVK 531



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 115/263 (43%), Gaps = 10/263 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P++  Y  +V+    ER  +    +L +           T   + N       +SD  R 
Sbjct: 287 PSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRV 346

Query: 93  LA--RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L   +L    P    Y+ L+   C   K+ +A+ +++ M   G    A+T++    +L R
Sbjct: 347 LELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYN----LLIR 402

Query: 151 GK----RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           G+     +E A+ L+ +M+   +  D   YN L+ A C  G       +   +E   +  
Sbjct: 403 GQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKP 462

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A T+++L+ G C++G+ + A+  L +MV  G +    TY+  +  L ++    + + F+
Sbjct: 463 NAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFI 522

Query: 267 MVCGGRDIKLDTELFGSLGSKLI 289
                +D+K  T  +  +  KL+
Sbjct: 523 GEMLQKDVKPSTVNYTIVIHKLL 545



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 127/315 (40%), Gaps = 35/315 (11%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN--------------- 74
           P  PT+  Y+ ++ +     DL      L+   R      A TFN               
Sbjct: 148 PPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVA 207

Query: 75  -----------FITNTENSLSVLSDLCRTLARLDKGF--------PRKSAYDTLIGRLCK 115
                      F  +  +  +++  LC    R+D+          P    Y  L+  LC 
Sbjct: 208 RDLFDKMPLRGFAQDVVSYATLIEGLCEA-GRIDEAVELFGEMDQPDMHMYAALVKGLCN 266

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
            ++ +E L ++  M E G+  S   +  ++    R ++ +EA  +++ M E  ++P +  
Sbjct: 267 AERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVT 326

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
              ++ AYC +G ++    VL+ M+      +  TY+ALV G C  G+V +A  LL +M 
Sbjct: 327 CTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMR 386

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
             G +    TY  ++      G+   A + + +  G  +  D   + +L + L    R +
Sbjct: 387 ACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTD 446

Query: 296 EANFILKEMNKRDLK 310
           +A  +   +  R +K
Sbjct: 447 QACSLFDSLETRGIK 461



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 7/185 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR---MEEA 157
           P    Y + I  LCK+K   E L  +  M +     S + +  ++  L + +    +   
Sbjct: 497 PDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART 556

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           WG    M     +PD+  Y   + AYC +G L     VL +M +  +  D   Y+ L+ G
Sbjct: 557 WG---EMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDG 613

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
               G+ + A  +L++M          TY  ++  L+R+      +        + I+L 
Sbjct: 614 HASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIEL- 672

Query: 278 TELFG 282
           T++FG
Sbjct: 673 TDVFG 677



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 16/282 (5%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSVLSDLC 90
           +P    Y+ LV    +E  +     LLNK  R C  N  A T+N +   +     +    
Sbjct: 356 KPNVWTYNALVQGFCNEGKVHKAMTLLNK-MRACGVNPDAVTYNLLIRGQCIDGHIESAF 414

Query: 91  RTLARLDKG---FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           R L RL +G      +  Y+ LI  LCK  + D+A  + D +   G   +A+TF+ +++ 
Sbjct: 415 RLL-RLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 473

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC-FKGNLTATSGVLKKMEEEKLGA 206
           L +  + + AW  +E M     +PD   Y+  +   C  KG+    S  + +M ++ +  
Sbjct: 474 LCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLS-FIGEMLQKDVKP 532

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRR----MVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
               Y  ++    +    E  + L+ R    MV  G +    TY   M A    G   +A
Sbjct: 533 STVNYTIVIHKLLK----ERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEA 588

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              +M      + +DT  + +L      + + + A  ILK+M
Sbjct: 589 ENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQM 630



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C    I+ A R++ +M   G      T++ +++ L +  R ++A  L
Sbjct: 392 PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSL 451

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + ++   + P+   +N L+   C  G        L+KM       D  TY + +   C+
Sbjct: 452 FDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 511

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
               +E    +  M+          Y  V+  LL+   Y    +    MV  G +  + T
Sbjct: 512 MKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVT 571

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
                    + G  R NEA  +L EM+K
Sbjct: 572 YTTSMRAYCIEG--RLNEAENVLMEMSK 597



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 17/202 (8%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA------- 157
           AY+TL+     + + D A+ ++  M       +  T+  +L  L R + +E+        
Sbjct: 606 AYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAG 665

Query: 158 -W---------GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            W         GL +VMK+    P+   Y+ +L  +   G     + ++  M+E+ +  +
Sbjct: 666 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 725

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
              Y ALV   C++ R  +A+VL+  M+  G      +Y H++  L+  G   +A +  M
Sbjct: 726 EDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFM 785

Query: 268 VCGGRDIKLDTELFGSLGSKLI 289
               +D   D  ++  +   LI
Sbjct: 786 NSRWKDYSPDEIVWKVIIDGLI 807



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 3/138 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y +++    +  + +EA  +V +M E    L+   +  +++   + KR  +AW 
Sbjct: 688 LPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWV 747

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M +    P L +Y +LL+    +G       +      +    D   +  ++ G  
Sbjct: 748 LVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLI 807

Query: 220 RAGRVE---EAFVLLRRM 234
           + G  +   E  ++L RM
Sbjct: 808 KKGHSDISREMIIMLERM 825


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 12/248 (4%)

Query: 61  RARDCCFNTANTFNFI-TNTENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKK 118
           RA +  + T    +F+  N+E +LS+LS++       DKG     S Y  LI  LC L+K
Sbjct: 401 RANELLYTTLIHGHFVYKNSERALSLLSEM------KDKGMELDVSLYGALIWGLCNLQK 454

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +DEA  +++ M E G   + + +  I+    + ++  EA  L++ M +    P++  Y  
Sbjct: 455 LDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCA 514

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+   C  G++        KM +  L  + + Y ALV G C+ GR+++A +LL  M+D G
Sbjct: 515 LVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKG 574

Query: 239 QSVLYSTYAHVMGALLRLGYY--AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            S+       +M   L+ G    A A+K  M+  G  ++LD   +         L    E
Sbjct: 575 MSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSG--LQLDLYGYTCFVWGFCNLNMIQE 632

Query: 297 ANFILKEM 304
           A  +L EM
Sbjct: 633 AREVLSEM 640



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 35/245 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI    K  +++E  ++V  M   G     +T++ +++   +  RME A+  
Sbjct: 227 PDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSY 286

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK   V  ++  ++  + A+C  G +     +  +M  + +  +  TY  LV G C+
Sbjct: 287 FAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCK 346

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA----------------VK 264
           AGR+++A VL   MV  G  +   TY  ++  L + G  A+A                + 
Sbjct: 347 AGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELL 406

Query: 265 FVMVCGG-------------------RDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           +  +  G                   + ++LD  L+G+L   L  L++ +EA  +L +M+
Sbjct: 407 YTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMD 466

Query: 306 KRDLK 310
           +  LK
Sbjct: 467 ECGLK 471



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 79/166 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y  L+   CK  ++D+AL + + M + G  L+ +T+  ++  L +  ++ EA  +
Sbjct: 332 PNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDV 391

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M+   +  +   Y  L+  +    N      +L +M+++ +  D   Y AL+ G C 
Sbjct: 392 FRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCN 451

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             +++EA  LL +M + G       Y ++M A  +    ++A+  +
Sbjct: 452 LQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALL 497



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 1/217 (0%)

Query: 96  LDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +G P     Y  L+  LCK  K+ EA  V  +M   G   + + +  ++      K  
Sbjct: 361 VQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNS 420

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E A  L+  MK+  +  D++ Y  L+   C    L     +L KM+E  L  +   Y  +
Sbjct: 421 ERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNI 480

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +    +A +  EA  LL++M+D G      TY  ++  L + G   +A+          +
Sbjct: 481 MDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGL 540

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           + + + + +L   L    R ++A  +L EM  + + +
Sbjct: 541 EPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSL 577



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 77/175 (44%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           +  TF+ ++  L +   + EA  L+  MK I  SPD+  YN L+  Y   G L     ++
Sbjct: 193 NVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLV 252

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            +M       D  TY+ALV   C+ GR+E A+     M  +G      T++  + A  + 
Sbjct: 253 GEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKN 312

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           G   +A+K       + +K +   +  L        R ++A  +  EM ++ + +
Sbjct: 313 GMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPL 367



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 101 PRKSA----YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           PR+SA     DTL+  L     +D+A+  +  + E     +  T + IL  L R +  E 
Sbjct: 122 PRRSALPSVVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSEL 181

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           AW L E +     +P++  +N ++   C +G+L     +L +M+      D  TY++L+ 
Sbjct: 182 AWRLFEQLP----APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLID 237

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           G  + G +EE   L+  M   G      TY  ++    + G   +A  +
Sbjct: 238 GYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSY 286


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 2/277 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   ++ L +A    +  E V  L  +       ++  T + + N       LS    T
Sbjct: 86  PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 93  LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           + ++ K G+ P    ++TL+  LC   ++ EAL +VD M E G   + IT + +++ L  
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++ +A  L++ M E    P+   Y  +L   C  G       +L+KMEE  +  DA  
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  ++ G C+ G ++ AF L   M   G      TY  ++G     G +    K +    
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            R I  +   F  L    +   +  EA+ +LKEM +R
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQR 362



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 95/197 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     +TL+  LC   K+ +A+ ++D M E GF  + +T+ P+L+V+ +  +   A  L
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL 250

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  +  D   Y+ ++   C  G+L     +  +ME +   AD  TY+ L+ G C 
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR ++   LLR M+    S    T++ ++ + ++ G   +A + +     R I  +T  
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370

Query: 281 FGSLGSKLIGLERFNEA 297
           + SL        R  EA
Sbjct: 371 YNSLIDGFCKENRLEEA 387



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 92/206 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI   CK  +++EA+++VD+M   G     +TF+ +++   +  R+++   L
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLEL 425

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    V  +   YN L+  +C  G L     + ++M   ++  D  +Y  L+ G C 
Sbjct: 426 FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCD 485

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +E+A  +  ++      +    Y  ++  +        A         + +KLD   
Sbjct: 486 NGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARA 545

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  + S+L   +  ++A+ + ++M +
Sbjct: 546 YNIMISELCRKDSLSKADILFRKMTE 571



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 69/133 (51%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LCK   +D A  + + M   GF    IT++ ++       R ++   L+  M 
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + ++SP++  ++ L+ ++  +G L     +LK+M +  +  +  TY++L+ G C+  R+E
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385

Query: 226 EAFVLLRRMVDDG 238
           EA  ++  M+  G
Sbjct: 386 EAIQMVDLMISKG 398



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 1/190 (0%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           DL R + +  +  P    ++ L   + K K+ +  L +   M   G   S  T   +++ 
Sbjct: 74  DLFRDMIQ-SRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINC 132

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             R +++  A+  M  + ++   PD   +N LL   C +  ++    ++ +M E      
Sbjct: 133 FCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPT 192

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             T + LV G C  G+V +A VL+ RMV+ G      TY  V+  + + G  A A++ + 
Sbjct: 193 LITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLR 252

Query: 268 VCGGRDIKLD 277
               R+IKLD
Sbjct: 253 KMEERNIKLD 262



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 68/135 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+ EA +++  M + G   + IT++ ++    +  R+EEA  +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM 390

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M      PD+  +N L+  YC    +     + ++M    + A+  TY+ LV G C+
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450

Query: 221 AGRVEEAFVLLRRMV 235
           +G++E A  L + MV
Sbjct: 451 SGKLEVAKKLFQEMV 465



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 118/278 (42%), Gaps = 2/278 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP +  ++ L+N    E  +     L+++        T  T N + N       +SD   
Sbjct: 155 EPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVV 214

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            + R+ + GF P +  Y  ++  +CK  +   A+ ++  M E    L A+ +  I+  L 
Sbjct: 215 LIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   ++ A+ L   M+      D+  YN L+  +C  G     + +L+ M + K+  +  
Sbjct: 275 KDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVV 334

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           T+  L+    + G++ EA  LL+ M+  G +    TY  ++    +     +A++ V + 
Sbjct: 335 TFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLM 394

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +    D   F  L +      R ++   + +EM+ R
Sbjct: 395 ISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLR 432



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 1/181 (0%)

Query: 98  KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF      Y+TLIG  C   + D+  +++  M +     + +TF  ++    +  ++ E
Sbjct: 292 KGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLRE 351

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L++ M +  ++P+   YN L+  +C +  L     ++  M  +    D  T++ L+ 
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+A R+++   L R M   G      TY  ++    + G    A K       R ++ 
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471

Query: 277 D 277
           D
Sbjct: 472 D 472



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 64/153 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  L+  LC   ++++AL +   + +    L    +  I+  +    ++++AW L
Sbjct: 471 PDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDL 530

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V  D  AYN +++  C K +L+    + +KM EE    D  TY+ L+     
Sbjct: 531 FCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLG 590

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
                 A  L+  M   G     ST   V+  L
Sbjct: 591 DDDATTAAELIEEMKSSGFPADVSTVKMVINML 623



 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 64/149 (42%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K D+A+ +   M +     + I F+ + S + + K+ E    L + M+   ++  +   +
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++  +C    L+     + K+ +     D   ++ L+ G C   RV EA  L+ RMV+ 
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G      T   ++  L   G  + AV  +
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLI 216


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 114/236 (48%), Gaps = 11/236 (4%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-----NT 79
           ++G  PDE T   Y++LV+       LE+  +   +   +C  N  N  ++       + 
Sbjct: 471 ENGCEPDEWT---YNELVSGFSKWGKLESASFYFQEMV-ECGLN-PNPVSYTALIDGHSK 525

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           +  + +   L + +  +    P   +Y+ +I  L K  +  EA ++ D M E G   + I
Sbjct: 526 DGKVDIALSLLKRMEEMGCN-PNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVI 584

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  ++  L R  R + A+ +   M++ +  P+L  Y+ L+   C +G       +LK+M
Sbjct: 585 TYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEM 644

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           E + L  D  T+ +L+ G    GR++ AF+LLRRMVD G    Y TY+ ++  L +
Sbjct: 645 ERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQK 700



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 57  LLNKRARDCCFNTANTFNFI----TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGR 112
           +LN+  RD  F  A+    +       E  +  ++D    ++ +  GF   S  +TL+ +
Sbjct: 114 MLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSC-NTLLIQ 172

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           L K + ++ A  +   M   G   S +TF+ ++++L++  ++ EA  ++  + +  +SPD
Sbjct: 173 LAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPD 232

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  L+  +C   NL    GV  +M +E    ++ TY  L+ G C  GRV+EA  +L 
Sbjct: 233 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 292

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            M++ G      TY   + AL  + +  +A++ V     R  + + + + +L S L  L 
Sbjct: 293 EMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 352

Query: 293 RFNEANFILKEMNKRDL 309
           +   A  +  +M K  L
Sbjct: 353 KLEVAIGLYHKMLKEGL 369



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 35/239 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH-PI--------------- 144
           P    Y TLI  LC   ++DEAL +++ M E G   +  T+  PI               
Sbjct: 266 PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIEL 325

Query: 145 -------------------LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
                              +S L+R  ++E A GL   M +  + P+   YN L+   C 
Sbjct: 326 VARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCV 385

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G  +    +   ME     A+ +TY+ ++ G C  G +E+A VL  +M+  G      T
Sbjct: 386 GGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVT 445

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           Y  ++   L  G    A + + +      + D   +  L S      +   A+F  +EM
Sbjct: 446 YNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 94/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC   +   AL++   M   G   +  T++ I+  L  G  +E+A  L
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M ++   P +  YN L+  Y  KGN+   + +L  M+E     D  TY+ LV G  +
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E A    + MV+ G +    +Y  ++    + G    A+  +          + E 
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + ++ + L    RF+EA  I  +M ++ L
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGL 579



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 2/232 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   Y+ L+N    + ++     LL+    + C     T+N + +  +    L      
Sbjct: 441 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 500

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              + + G  P   +Y  LI    K  K+D AL ++  M E G   +  +++ +++ L++
Sbjct: 501 FQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSK 560

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R  EA  + + M E  + P++  Y  L+   C  G       +   ME+ K   +  T
Sbjct: 561 ENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT 620

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           Y +L+ G C+ G+ +EA +LL+ M   G +    T+  ++   + LG    A
Sbjct: 621 YSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHA 672


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 131/306 (42%), Gaps = 20/306 (6%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           ++ ++  + +   + G  PD  T   Y+ +++       +E    L N+  R  C     
Sbjct: 408 MLEEACDLIKKMIEDGHVPDVVT---YNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRR 464

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKI 119
           + N I       S +   C+   +LD+ F            P    Y TLI  LC + ++
Sbjct: 465 SHNTIILGLCQQSKIDQACQR-GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 523

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           D+A  +++ M +     + +T + ++  L +  R++EA  +++ M     SPD+  YN L
Sbjct: 524 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTL 583

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +  +C  G       +L  M    L  +  TY ALV G C+A R+ EA  +  +M   G 
Sbjct: 584 VHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGC 643

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           +    TY  ++      G     +K    MVC G  I  D  ++G+L ++L    R   A
Sbjct: 644 APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAG--ISPDHVVYGTLAAELCKSGRSARA 701

Query: 298 NFILKE 303
             IL+E
Sbjct: 702 LEILRE 707



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 13/284 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P++  Y  L++        +  R L     R  C  +  T+N + +      +L + C  
Sbjct: 356 PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDL 415

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL----- 145
           + ++  D   P    Y+T++  LCK  +++EAL + + M   G   +  + + I+     
Sbjct: 416 IKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQ 475

Query: 146 -----SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
                    RGK ++EA+ L++ M +    PD+  Y+ L++  C    +     +L+ M 
Sbjct: 476 QSKIDQACQRGK-LDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMV 534

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           + +      T + L+ G C+AGR++EA  +L  MV  GQS    TY  ++    R G   
Sbjct: 535 KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTE 594

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +A + +     R +  +   + +L S L    R  EA  +  +M
Sbjct: 595 RARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQM 638



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 25/246 (10%)

Query: 84  SVLSDLCRTLARLD------------KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           +++S LC ++AR+D            +  P     +TLI  LCK  +I EA  V+D M  
Sbjct: 512 TLISGLC-SIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 570

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T++ ++    R  + E A  L+  M    ++P++  Y  L++  C    L  
Sbjct: 571 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 630

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
             GV  +M+      +  TY AL+LG C AG+V+    L   MV  G S  +  Y  +  
Sbjct: 631 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAA 690

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            L + G  A+A++ +    GR+         SL S+  G E +  A   L E  K ++ +
Sbjct: 691 ELCKSGRSARALEILR--EGRE---------SLRSEAWGDEVYRFAVDGLLEAGKMEMAL 739

Query: 312 GFKLRD 317
           GF +RD
Sbjct: 740 GF-VRD 744



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 3/128 (2%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           SAY+ ++  LCK  ++D+AL +   M+E    L+A +   +L  L    R++EA   ++V
Sbjct: 146 SAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEA---LQV 202

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
            +E R  P L   N LL  +C +G +     +L+ M +E+   D  +Y  ++ G C+AGR
Sbjct: 203 YRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGR 262

Query: 224 VEEAFVLL 231
           VEEA  L 
Sbjct: 263 VEEAVRLF 270



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 74/159 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+ +I  LC+  +IDEA+++ + M E      + ++  ++  L +  ++ +A  L + +
Sbjct: 290 GYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKL 349

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V+P   AY  L+   C   +      +   M          TY+ ++  +C+ G +
Sbjct: 350 LHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGML 409

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           EEA  L+++M++DG      TY  VM  L +     +A+
Sbjct: 410 EEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEAL 448



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 9/219 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  LI  L K  K+++A  +   +   G   S + +  ++  L      ++A  L
Sbjct: 321 PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 380

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      P    YN ++ A C +G L     ++KKM E+    D  TY+ ++ G C+
Sbjct: 381 FADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 440

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-------FVMVCGGRD 273
           + RVEEA +L   M   G +    ++  ++  L +     QA +       F ++    D
Sbjct: 441 SSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTD 500

Query: 274 IK--LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                D   + +L S L  + R ++A  +L++M KR  K
Sbjct: 501 DGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCK 539



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 4/164 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  L K ++ +   ++V +M + G    + TF  IL  L +  +M+EA  +
Sbjct: 42  PYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELV 101

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M+ M+   + P     ++L    C +G++     +L+ M      A++  Y+ +V+  C+
Sbjct: 102 MDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPV----ANSSAYNIVVVALCK 157

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           A RV++A  L R M +    +   +   V+  L+  G   +A++
Sbjct: 158 AARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQ 201



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 13/142 (9%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIM----AEGGFGLSAITFHPILSVLTR 150
           +D+G FP    + T++  LCK  K+DEA  V+D M        F  S+   H    +  R
Sbjct: 71  VDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAH---ELCLR 127

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           G  ME A+ L+E+M     S    AYN ++ A C    +     + + M E+++   A +
Sbjct: 128 GS-MERAFQLLEIMPVANSS----AYNIVVVALCKAARVDDALELARTMSEKRIPLAAGS 182

Query: 211 YDALVLGACRAGRVEEAFVLLR 232
            D++++G   +GR++EA  + R
Sbjct: 183 LDSVLVGLMDSGRIDEALQVYR 204


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 3/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  ++   C+ +K  EA  ++  M E G     +T   +++   +  RM +A  +
Sbjct: 109 PSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRV 168

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E+MK     P++  YN L+  +C +G +     +L KM    +  DA TY+ L+ G C 
Sbjct: 169 LELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCI 228

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +E AF LLR M  DG      TY  ++ AL + G   QA         R IK +   
Sbjct: 229 DGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVT 288

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           F SL   + GL +  +A+   K + K
Sbjct: 289 FNSL---INGLCKSGKADIAWKFLEK 311



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 4/204 (1%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +I   CK  ++ +ALRV+++M   G   +  T++ ++       ++ +A  L+  M+   
Sbjct: 152 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACG 211

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V+PD   YN L+   C  G++ +   +L+ ME + L AD  TY+AL+   C+ GR ++A 
Sbjct: 212 VNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQAC 271

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGS 286
            L   +   G      T+  ++  L + G    A KF+  MV  G     DT  + S   
Sbjct: 272 SLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG--CTPDTYTYSSFIE 329

Query: 287 KLIGLERFNEANFILKEMNKRDLK 310
            L  ++   E    + EM ++D+K
Sbjct: 330 HLCKMKGSQEGLSFIGEMLQKDVK 353



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 110/252 (43%), Gaps = 10/252 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P++  Y  +V+    ER  +    +L +           T   + N       +SD  R 
Sbjct: 109 PSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRV 168

Query: 93  LA--RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L   +L    P    Y+ L+   C   K+ +A+ +++ M   G    A+T++    +L R
Sbjct: 169 LELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYN----LLIR 224

Query: 151 GK----RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           G+     +E A+ L+ +M+   +  D   YN L+ A C  G       +   +E   +  
Sbjct: 225 GQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKP 284

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A T+++L+ G C++G+ + A+  L +MV  G +    TY+  +  L ++    + + F+
Sbjct: 285 NAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFI 344

Query: 267 MVCGGRDIKLDT 278
                +D+K  T
Sbjct: 345 GEMLQKDVKPST 356



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LC  ++ +E L ++  M E G+  S   +  ++    R ++ +EA  +
Sbjct: 74  PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEM 133

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E  ++P +     ++ AYC +G ++    VL+ M+      +  TY+ALV G C 
Sbjct: 134 LQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCN 193

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V +A  LL +M   G +    TY  ++      G+   A + + +  G  +  D   
Sbjct: 194 EGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYT 253

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L + L    R ++A  +   +  R +K
Sbjct: 254 YNALINALCKDGRTDQACSLFDSLETRGIK 283



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 133/327 (40%), Gaps = 32/327 (9%)

Query: 3   LLRKLPTKFLIPQSVLVT---RSFTKSGAFPD-------------EPTSAYYDDLVNAAG 46
           +L+++  K L P  V  T    ++ K G   D             +P    Y+ LV    
Sbjct: 133 MLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFC 192

Query: 47  HERDLETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSVLSDLCRTLARLDKG---FPR 102
           +E  +     LLNK  R C  N  A T+N +   +     +    R L RL +G      
Sbjct: 193 NEGKVHKAMTLLNK-MRACGVNPDAVTYNLLIRGQCIDGHIESAFRLL-RLMEGDGLIAD 250

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           +  Y+ LI  LCK  + D+A  + D +   G   +A+TF+ +++ L +  + + AW  +E
Sbjct: 251 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLE 310

Query: 163 VMKEIRVSPDLTAYNYLLTAYC-FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
            M     +PD   Y+  +   C  KG+    S  + +M ++ +      Y  ++    + 
Sbjct: 311 KMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLS-FIGEMLQKDVKPSTVNYTIVIHKLLK- 368

Query: 222 GRVEEAFVLLRR----MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
              E  + L+ R    MV  G +    TY   M A    G   +A   +M      + +D
Sbjct: 369 ---ERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVD 425

Query: 278 TELFGSLGSKLIGLERFNEANFILKEM 304
           T  + +L      + + + A  ILK+M
Sbjct: 426 TMAYNTLMDGHASIGQTDHAVSILKQM 452



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 7/185 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR---MEEA 157
           P    Y + I  LCK+K   E L  +  M +     S + +  ++  L + +    +   
Sbjct: 319 PDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART 378

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           WG    M     +PD+  Y   + AYC +G L     VL +M +  +  D   Y+ L+ G
Sbjct: 379 WG---EMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDG 435

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
               G+ + A  +L++M          TY  ++  L+R+      +        + I+L 
Sbjct: 436 HASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIEL- 494

Query: 278 TELFG 282
           T++FG
Sbjct: 495 TDVFG 499



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 4/204 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++LI   C+  ++D A  + D M   GF    +++  ++  L    R++EA  L
Sbjct: 8   PDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVEL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +    PD+  Y  L+   C          +L++M+E       R Y A+V   CR
Sbjct: 68  FGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCR 123

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             + +EA  +L+ M + G +    T   V+ A  + G  + A++ + +   R  K +   
Sbjct: 124 ERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWT 183

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L        + ++A  +L +M
Sbjct: 184 YNALVQGFCNEGKVHKAMTLLNKM 207



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C    I+ A R++ +M   G      T++ +++ L +  R ++A  L
Sbjct: 214 PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSL 273

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + ++   + P+   +N L+   C  G        L+KM       D  TY + +   C+
Sbjct: 274 FDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 333

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
               +E    +  M+          Y  V+  LL+   Y    +    MV  G +  + T
Sbjct: 334 MKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVT 393

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
                    + G  R NEA  +L EM+K
Sbjct: 394 YTTSMRAYCIEG--RLNEAENVLMEMSK 419



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 17/202 (8%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA------- 157
           AY+TL+     + + D A+ ++  M       +  T+  +L  L R + +E+        
Sbjct: 428 AYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAG 487

Query: 158 -W---------GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            W         GL +VMK+    P+   Y+ +L  +   G     + ++  M+E+ +  +
Sbjct: 488 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 547

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
              Y ALV   C++ R  +A+VL+  M+  G      +Y H++  L+  G   +A +  M
Sbjct: 548 EDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFM 607

Query: 268 VCGGRDIKLDTELFGSLGSKLI 289
               +D   D  ++  +   LI
Sbjct: 608 NSRWKDYSPDEIVWKVIIDGLI 629



 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 3/138 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y +++    +  + +EA  +V +M E    L+   +  +++   + KR  +AW 
Sbjct: 510 LPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWV 569

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M +    P L +Y +LL+    +G       +      +    D   +  ++ G  
Sbjct: 570 LVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLI 629

Query: 220 RAGRVE---EAFVLLRRM 234
           + G  +   E  ++L RM
Sbjct: 630 KKGHSDISREMIIMLERM 647


>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 360

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 96/213 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     ++L+   C   +I EA+ +VD M E G+    +TF  ++  L +  +  EA  L
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M      PDL  Y  ++   C +G       +L KME+ K+ AD   Y+ ++ G C+
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCK 262

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +++AF L  +M   G      TY  ++  L   G ++ A + +     ++I  D   
Sbjct: 263 YKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVF 322

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           F +L    +   +  EA  +  EM KR +   F
Sbjct: 323 FNALIDAFVKEGKLVEAEKLYDEMVKRSIDPSF 355



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/231 (19%), Positives = 97/231 (41%), Gaps = 5/231 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           ++++ +  D+ ++     + FP    +  L+  + K+ K D  + + + M   G   +  
Sbjct: 57  DDAIGLFGDMVKS-----RPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLY 111

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+   ++   R  ++  A  ++  M ++   P +   N LL  +C    ++    ++ +M
Sbjct: 112 TYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 171

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            E     D  T+  LV G  +  +  EA  L+ RMV  G      TY  V+  L + G  
Sbjct: 172 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 231

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             A+  +       I+ D  ++ ++   L   +  ++A  +  +M  + +K
Sbjct: 232 DLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIK 282


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 2/205 (0%)

Query: 96  LDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           + KG PR +   + ++I  LC   ++ +A  V +++   G   + +TF+ ++       +
Sbjct: 536 MSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGK 595

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           ME+A+G+++ M  + + PD+  YN L++ YC  G +     + ++M  +K+     TY  
Sbjct: 596 MEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSI 655

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++ G   AGR   A  +   M+D G +V   TY  ++  L R     +A+      G  D
Sbjct: 656 VLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMD 715

Query: 274 IKLDTELFGSLGSKLIGLERFNEAN 298
            K D  +  ++ + L  + R  EAN
Sbjct: 716 CKFDITILNTVINALYKVRRREEAN 740



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y +LI   C    + +A  +V ++M++G    + + F  I+  L    R+ +A  
Sbjct: 507 PNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHD 566

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +  ++  I   P +  +N L+  YC  G +    GVL  M    +  D  TY+ LV G C
Sbjct: 567 VFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYC 626

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLD 277
           ++G++++  +L R M+         TY+ V+  L   G  + A K    M+  G  + +D
Sbjct: 627 KSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDID 686

Query: 278 T 278
           T
Sbjct: 687 T 687



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/270 (18%), Positives = 116/270 (42%), Gaps = 10/270 (3%)

Query: 48  ERDLETVRYLLNKRARDCCFNTANTFNFI-------TNTENSLSVLSDLCRTLARLDKGF 100
           +R  E V  LL++ +   C   A ++N +       + ++ +L ++  + +   R     
Sbjct: 205 KRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCS--- 261

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++T+I    K  ++ +A  +++ M + G     +T++ I+  L + + M++A  +
Sbjct: 262 PDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELV 321

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V PD   Y  ++  Y   G+   ++ + +KM  + L     T+++ +   C+
Sbjct: 322 LRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCK 381

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR ++A  + + M   G      +Y+ ++      G +A           + I  +   
Sbjct: 382 HGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHC 441

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F  L S        +EA  +  EM  + ++
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVR 471



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 123/313 (39%), Gaps = 26/313 (8%)

Query: 3   LLRKLPTKFLIPQSVLVTR---SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN 59
           + RK+ +K LIP  V       S  K G   D      Y   +   GH  DL +   LL+
Sbjct: 356 MFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQY---MTTKGHMPDLVSYSILLH 412

Query: 60  KRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKK 118
             A                TE   + +++L  ++A  DKG       ++ LI    K   
Sbjct: 413 GYA----------------TEGRFADMNNLFHSMA--DKGIVANCHCFNILISAHAKRGM 454

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +DEA+ V   M   G     +T+  ++S   R  R+ +A      M  I + P+   Y+ 
Sbjct: 455 MDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHS 514

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLG-ADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
           L+  +C  G+L     ++ +M  + +   +   + +++   C  GRV +A  +   ++  
Sbjct: 515 LIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHI 574

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G      T+  ++     +G   +A   +       I+ D   + +L S      + ++ 
Sbjct: 575 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDG 634

Query: 298 NFILKEMNKRDLK 310
             + +EM  + +K
Sbjct: 635 LILFREMLHKKVK 647



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 1/170 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG  P    Y  +I          E+ ++   M   G     +TF+  +S L +  R 
Sbjct: 326 VDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRS 385

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  + + M      PDL +Y+ LL  Y  +G     + +   M ++ + A+   ++ L
Sbjct: 386 KDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNIL 445

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +    + G ++EA ++   M   G      TY+ ++ A  R+G  A A++
Sbjct: 446 ISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAME 495



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ +V+A    R ++    +L +           T+  I +  +      +  +
Sbjct: 296 EPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAK 355

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              ++  KG  P    +++ +  LCK  +  +A  +   M   G     +++  +L    
Sbjct: 356 MFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYA 415

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              R  +   L   M +  +  +   +N L++A+  +G +     V  +M+ + +  D  
Sbjct: 416 TEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVV 475

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           TY  L+   CR GR+ +A     +M+  G    +V+Y +  H
Sbjct: 476 TYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIH 517


>gi|449445409|ref|XP_004140465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
 gi|449518107|ref|XP_004166085.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
          Length = 578

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 95/207 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C++   +EALR+  +M   G  L   T++ +L  L    R+ +A  L
Sbjct: 291 PNHVTYTTLIDGYCRVNDFEEALRLCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDANKL 350

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E +V PD    N L+ AYC  G++ +   V  KM +  L  D+ TY AL+ G C 
Sbjct: 351 LNEMGERKVEPDNVTCNTLINAYCKIGDMKSALKVKSKMLDAGLQLDSFTYKALIHGFCW 410

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +E A  LL  M+D G S  Y TY+ ++     LG     +  +     +   +D  +
Sbjct: 411 VRDMESAKELLFCMLDVGLSPGYCTYSWLVDGYCELGNEGAIISLLDEFLTKGYCVDLSV 470

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
             +L  +L   ER   A  I   M+ R
Sbjct: 471 CRALIRRLCHQERVGFAEKIYSTMHLR 497



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 2/216 (0%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           RL    P   A   L+  L K +  D   +    M   G   +   ++ ++    +   +
Sbjct: 147 RLHGFKPNLHACTVLLNSLAKDRLTDTVWKSYKKMIRVGVVPNIHIYNVLIHACCKSGDV 206

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A  L+  M+   V PDL  YN L++ Y  K        V  +ME   +  D  TY++L
Sbjct: 207 EKAEQLVCEMELKSVFPDLYTYNTLISLYSRKSLHYEALCVQDRMERAGVSPDIVTYNSL 266

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ G++ EA  L R + D   +  + TY  ++    R+  + +A++   V   + +
Sbjct: 267 IYGFCKEGKMREAVKLFREIKDVSPN--HVTYTTLIDGYCRVNDFEEALRLCKVMEAKGL 324

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            L    + S+  KL    R  +AN +L EM +R ++
Sbjct: 325 HLGVATYNSVLRKLCEEGRIRDANKLLNEMGERKVE 360


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 1/209 (0%)

Query: 97  DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG  P    +  L+  LCK  ++ +A  +V++M E G   +A+ F+ I+  L +  R  
Sbjct: 3   EKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSA 62

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA+G +E M+ + VSP +  YN L+  +C +  L     +L++M       +  TY+  +
Sbjct: 63  EAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFL 122

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G C+ G+V++A  L R M +    +    Y  ++  L + G  A+A   +         
Sbjct: 123 HGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCV 182

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEM 304
                + ++ S L    R NEA+ + K M
Sbjct: 183 PKPGCYNAILSWLCKGSRINEAHKLFKRM 211



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T +  LCK  K+D+AL +   M E    L    +  ++  L +  ++ EA+ L
Sbjct: 113 PNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSL 172

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+     P    YN +L+  C    +     + K+M    +  D  T+  +V G CR
Sbjct: 173 LDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCR 232

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             R+++A +LL++M   G +     Y  ++ AL R G  ++A + +
Sbjct: 233 GHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLL 278



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           MAE G   + +TF  ++  L +  R+ +A+ L+EVM E    P+   +N ++ A C +G 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                G ++ M    +     TY+ L+ G C+  ++  A  +L+ M   G    + TY  
Sbjct: 61  SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  L + G    A+        + I+LD   + +L   L    +  EA  +L EM
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEM 176



 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 2/141 (1%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y  L++       L     LL++     C      +N I +     S +++  +   R+ 
Sbjct: 153 YTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMT 212

Query: 98  KG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
                P    +  ++   C+  +ID+AL ++  M   G     + ++ ++  L R  R+ 
Sbjct: 213 GSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVS 272

Query: 156 EAWGLMEVMKEIRVSPDLTAY 176
           EA+ L++ M    +SP+   Y
Sbjct: 273 EAYRLLQEMISRGLSPNSRTY 293


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 2/250 (0%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           ++F +   F  EP + +++ L+      + LET   L  K           T+N +    
Sbjct: 189 KAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAH 248

Query: 81  NSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
                LS       ++ K    P    Y  L+  LC+  ++  AL V+D M   G+   A
Sbjct: 249 CHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDA 308

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T++ +L+ L R   + EA+ L+  MK +  +PD+  YN ++T +C +G       +L+ 
Sbjct: 309 LTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRD 368

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M E     +A +Y  LV G C  G+ +EA   +  M+ +G     S Y  ++  L   G 
Sbjct: 369 MPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITGLCNEGK 428

Query: 259 YAQAVKFVMV 268
             +A + +++
Sbjct: 429 VGEACEVLVM 438



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 14/233 (6%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI------ 76
           F K   F   P +  Y+ L+ A  H   L    +L NK  +  C     T++ +      
Sbjct: 226 FKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCR 285

Query: 77  -TNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
            +  + +L VL ++      L+KG+ P    Y+TL+  LC+   + EA R++  M   G 
Sbjct: 286 KSQVKTALGVLDEM------LNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGC 339

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
               I ++ +++   R  R  +A  ++  M E    P+  +Y  L+   C +G       
Sbjct: 340 NPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKD 399

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            +++M           Y  L+ G C  G+V EA  +L  M     +   ST++
Sbjct: 400 FVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWS 452



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +EA++    M E G+   A  F+ +L VL   K +E A  L + + E  +SP+   YN L
Sbjct: 185 NEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNIL 244

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           + A+C    L+    +  KM ++    D  TY  L+ G CR  +V+ A  +L  M++ G 
Sbjct: 245 IRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGY 304

Query: 240 SVLYSTYAHVMGAL-----LRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
                TY  ++ +L     LR  Y   +   VM C    I  +T + G
Sbjct: 305 VPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITG 352



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 1/164 (0%)

Query: 93  LARLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           +A    GF    S Y TLI +L + ++      ++  M + G   +   F  I+ +    
Sbjct: 122 VASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEV 181

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
               EA      M E    P    +N LL        L     + KK+ E  +  + RTY
Sbjct: 182 GMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTY 241

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + L+   C + ++  A+ L  +M   G      TY+ +M  L R
Sbjct: 242 NILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCR 285


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 2/232 (0%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F ++ A   +P    Y+ LV     +  +     ++N+   + C     T+N I N    
Sbjct: 373 FNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCK 432

Query: 83  LSVLSDLCRTLA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +  +SD    +   + KG+ P    ++TLI   CK  K+D AL++V+ M   G     IT
Sbjct: 433 MGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVIT 492

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ +L+ L +  + +E     E M      P+   YN L+  +C    L   SGV+ +M 
Sbjct: 493 YNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMC 552

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           ++ L  DA +++ L+ G CR G ++ A++L +++ + G S    T+  ++GA
Sbjct: 553 QDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGA 604



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CK+ +++EA  V+  M + G    A++F+ ++    R   ++ A+ L
Sbjct: 523 PNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLL 582

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + + E   S     +N L+ AY  K N+     +  +M  +    D  TY  LV G C+
Sbjct: 583 FQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCK 642

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           A  V+ A+  L  M+  G     +T+  ++  L      ++AV  + +
Sbjct: 643 AANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHI 690



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 1/185 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP  + ++ ++  LC+   + E+  ++  + + G   +  T +  +  L    R+EEA  
Sbjct: 208 FPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVA 267

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+E M    V+PD+  YN L+   C    +   +  L +M  +    D  TY+ ++ G C
Sbjct: 268 LVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYC 326

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           ++G ++EA  LL+  V  G      TY  ++  L   G   +A++       +D+K D  
Sbjct: 327 KSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLV 386

Query: 280 LFGSL 284
           ++ SL
Sbjct: 387 VYNSL 391



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 74/162 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  LCK  K+ EA + +  M   G      T++ I+    +   ++EA  L
Sbjct: 278 PDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATEL 337

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++        PD   Y  L+   C +G++     +  + + + L  D   Y++LV G CR
Sbjct: 338 LKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCR 397

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G +  A  ++  MV++G      TY  ++  L ++G  + A
Sbjct: 398 QGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDA 439



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I   CK   + EA  ++      GF    +T+  +++ L     +E A  
Sbjct: 312 IPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALE 371

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L    +   + PDL  YN L+   C +G +     V+ +M EE    D  TY+ ++ G C
Sbjct: 372 LFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLC 431

Query: 220 RAGRVEEAFVLLRRMVDDG 238
           + G + +A V++   +  G
Sbjct: 432 KMGNISDAAVVMNDAIVKG 450



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 2/227 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L+     +  ++     L +     C     T+N I +      +L +    
Sbjct: 278 PDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATEL 337

Query: 93  LA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L   + KGF P +  Y +LI  LC    I+ AL + +           + ++ ++  L R
Sbjct: 338 LKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCR 397

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              +  A  +M  M E    PD+  YN ++   C  GN++  + V+     +    D  T
Sbjct: 398 QGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 457

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           ++ L+ G C+  +++ A  L+ RM   G +    TY  V+  L + G
Sbjct: 458 FNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAG 504



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 60/134 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +   +   C   +   ALR++  ++E G       +  ++  L        A  L
Sbjct: 139 PDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHL 198

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    V PD+  +N +L A C KG++  +  +L K+ +  + A+  T +  + G C 
Sbjct: 199 FDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCE 258

Query: 221 AGRVEEAFVLLRRM 234
            GR+EEA  L+ RM
Sbjct: 259 DGRLEEAVALVERM 272



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 14/227 (6%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNA---AGHERDL-ETVRYLLNKRARDCCFNTANTF 73
           LV R +T  G  PD  T   Y+ ++N    AG  +++ ET   ++ K     C   A T+
Sbjct: 477 LVERMWT-YGIAPDVIT---YNSVLNGLCKAGKAKEVNETFEEMILKG----CRPNAITY 528

Query: 74  NFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           N +      ++ L +    + R+  D   P   +++TLI   C+   +D A  +   + E
Sbjct: 529 NILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDE 588

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G+  +A TF+ ++   +    M+ A  +   M      PDL  Y  L+   C   N+  
Sbjct: 589 KGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDR 648

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
               L +M  +       T+  ++       RV EA  ++  MV  G
Sbjct: 649 AYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMG 695



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 7/209 (3%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI----LSVLTRGKRMEEAWGL 160
           AY  LI  L    ++D+   V   +A     L+  +  P+    +    R  R+  A   
Sbjct: 37  AYRALIRELVSAGRLDD---VDAALASARSHLAPDSLQPLYVASIQAYARAGRLRAAVDA 93

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M      P   AYN ++ A            V  +M    +  DART+   +   C 
Sbjct: 94  FERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCL 153

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR   A  LLR + + G     + Y  V+  L   G+   A        GRD+  D   
Sbjct: 154 TGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVAT 213

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F ++   L       E+  +L ++ KR +
Sbjct: 214 FNNVLHALCQKGDVMESGALLAKVLKRGM 242


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 112/234 (47%), Gaps = 2/234 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  LV+      +++    LL++ +         T+N + N    +  +    + 
Sbjct: 460 PNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKL 519

Query: 93  LARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +  +D    FP    Y T++   CK+ ++ +A  ++ IM + G   + +TF+ +++    
Sbjct: 520 MEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCM 579

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              +E+   L++ M +  + P+ T +N L+  YC + N+ AT  + K M  + +  D  T
Sbjct: 580 SGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNT 639

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           Y+ L+ G C+A  ++EA+ L + MV+ G S+  ++Y  ++    +   + +A K
Sbjct: 640 YNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARK 693



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 119/247 (48%), Gaps = 3/247 (1%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEAL 123
           C+NT  ++N I +    L  + +    L +++     P   +Y  ++   C+++++ + L
Sbjct: 249 CWNTV-SYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVL 307

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           ++++ +   G   +  T++ I+S L +  R+ EA  ++ VMK  R+ PD   Y  L++ +
Sbjct: 308 KLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGF 367

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
              GN++    +  +M+ +K+  D  TY +++ G C+AG+V EA  L   M+  G     
Sbjct: 368 GKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDE 427

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++    + G   +A         + +  +   + +L   L      + AN +L E
Sbjct: 428 VTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHE 487

Query: 304 MNKRDLK 310
           M+++ L+
Sbjct: 488 MSEKGLQ 494



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 97/205 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+++I  LCK  ++ EA +V+ +M         + +  ++S   +   +   + L
Sbjct: 320 PNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKL 379

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + MK  ++ PD   Y  ++   C  G +     +  +M  + L  D  TY AL+ G C+
Sbjct: 380 FDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCK 439

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG ++EAF L  +MV+ G +    TY  ++  L + G    A + +     + ++ +   
Sbjct: 440 AGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCT 499

Query: 281 FGSLGSKLIGLERFNEANFILKEMN 305
           + +L + L  +    +A  +++EM+
Sbjct: 500 YNALINGLCKVGNIEQAVKLMEEMD 524



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 11/194 (5%)

Query: 84  SVLSDLCRT-----------LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           S++S LC+T           + +  + FP    Y TLI    K   +    ++ D M   
Sbjct: 327 SIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRK 386

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
                 +T+  ++  L +  ++ EA  L   M    + PD   Y  L+  YC  G +   
Sbjct: 387 KIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEA 446

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  +M E+ L  +  TY ALV G C+ G V+ A  LL  M + G      TY  ++  
Sbjct: 447 FSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALING 506

Query: 253 LLRLGYYAQAVKFV 266
           L ++G   QAVK +
Sbjct: 507 LCKVGNIEQAVKLM 520



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 1/190 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KG  P +  Y  LI   CK  ++ EA  + + M E G   + +T+  ++  L +   +
Sbjct: 419 LSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEV 478

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A  L+  M E  + P++  YN L+   C  GN+     ++++M+      D  TY  +
Sbjct: 479 DIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTI 538

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   C+ G + +A  LLR M+D G      T+  +M      G      + +     + I
Sbjct: 539 MDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGI 598

Query: 275 KLDTELFGSL 284
             +   F SL
Sbjct: 599 MPNATTFNSL 608



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 6/211 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS---D 88
           +P    Y+ L+N      ++E    L+ +      F    T+  I +    +  ++   +
Sbjct: 494 QPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHE 553

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R +  LDKG  P    ++ L+   C    +++  R++  M + G   +A TF+ ++  
Sbjct: 554 LLRIM--LDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQ 611

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
                 M     + + M    V PD   YN L+  +C   N+     + K+M E+     
Sbjct: 612 YCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLT 671

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           A +Y++L+ G  +  + EEA  L   M   G
Sbjct: 672 AASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           I  A RV    +E G   + ++++ IL +L +  +++EA  L+  M+     PD+ +Y+ 
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSV 292

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD- 237
           ++  YC    L     ++++++ + L  +  TY++++   C+ GRV EA  +LR M +  
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 238 --GQSVLYST 245
               +V+Y+T
Sbjct: 353 IFPDNVVYTT 362



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 7/206 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGH-ERDLETVRYLLNKRARDCCFNTAN 71
           I Q+V +      +G FPD  T     D     G   +  E +R +L+K  +     T  
Sbjct: 513 IEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQP----TIV 568

Query: 72  TFNFITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN + N      +L D  R +   LDKG  P  + +++L+ + C    +   + +   M
Sbjct: 569 TFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGM 628

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G      T++ ++    + + M+EAW L + M E   S    +YN L+  +  +   
Sbjct: 629 HAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKF 688

Query: 190 TATSGVLKKMEEEKLGADARTYDALV 215
                + ++M      A+   YD  V
Sbjct: 689 EEARKLFEEMRTHGFIAEKEIYDIFV 714


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 2/143 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++TL+   CK   IDEALR+ +IM + GF + A T + I S   R  R EEA  L+  M+
Sbjct: 370 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 429

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  V+P++ +++ L+  YC + N      + K ME++       TY+A +   C+ G++E
Sbjct: 430 ERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 489

Query: 226 EAFVLLRRMVDDGQSVLYSTYAH 248
           EA+ L+  M + G  ++  TY +
Sbjct: 490 EAYKLINEMQERG--LMPDTYTY 510



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 1/211 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P    Y+TL+    ++K +     ++ +M +     +  T+  ++   +R  ++EE
Sbjct: 221 KGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEE 280

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L + M +  + PD+  Y  ++   C  GN+     +  +M E +L  +A TY AL+ 
Sbjct: 281 AEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALIN 340

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           GAC+AG ++ A +++  M   G  V    +  +M    + G   +A++   +   +  ++
Sbjct: 341 GACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEI 400

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           D      + S      R  EA  +L  M +R
Sbjct: 401 DAFTCNIIASGFCRSNRREEAKRLLLTMEER 431



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   ++  LI   CK +   EA R+  +M + G   S +T++  +    +  +MEEA+ L
Sbjct: 435 PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKL 494

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  + PD   Y  L+      GN+     +  +M +  L  +  TY  ++ G  +
Sbjct: 495 INEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSK 554

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR +EAF L   M  +G       Y+ ++ +L ++G
Sbjct: 555 DGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVG 591



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 85/204 (41%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y  LI    +  KI+EA ++ D M + G       +  I++   +   M+ A+ L + 
Sbjct: 263 TTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDE 322

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M E R+ P+   Y  L+   C  G + A   ++  M+ + +  +   ++ L+ G C+ G 
Sbjct: 323 MTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGM 382

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           ++EA  L   M   G  +   T   +     R     +A + ++    R +  +   F  
Sbjct: 383 IDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSI 442

Query: 284 LGSKLIGLERFNEANFILKEMNKR 307
           L       + F EA  + K M K+
Sbjct: 443 LIDIYCKEQNFAEARRLFKVMEKK 466



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 87/200 (43%), Gaps = 3/200 (1%)

Query: 88  DLCRTLAR--LDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +LC    R  +D G   R  ++  ++  LCK  ++  A  ++D +   GF  S IT++ +
Sbjct: 174 ELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTL 233

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L+     K +     ++ +M++  V  ++T Y  L+  Y     +     +  +M ++ +
Sbjct: 234 LNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGI 293

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D   Y +++   C+ G ++ AFVL   M +        TY  ++    + G    A  
Sbjct: 294 EPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEM 353

Query: 265 FVMVCGGRDIKLDTELFGSL 284
            V     + + ++  +F +L
Sbjct: 354 MVNDMQSKGVDVNRVIFNTL 373


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 4/270 (1%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDL-ETVRYLLNKRARDCCFNTANTF 73
            +++  R F K      +P    Y+ ++++   +R + E V +L     R    +   T+
Sbjct: 216 NTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVV-TY 274

Query: 74  NFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           N I +   SL  L++  R    +      P    ++ L+  LCK   + EA  V + M E
Sbjct: 275 NTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTE 334

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G   +A T++ ++       +M+EA  ++ +M     +P+L++YN L+  YC    +  
Sbjct: 335 KGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNE 394

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +L +M E+ L  D  TY  L+ G C+ GR  EA  L + M   G       Y+ ++ 
Sbjct: 395 AKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLD 454

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELF 281
              + G+  +A+K +     R IK +  L+
Sbjct: 455 GFCKHGHLDEALKLLKEMHERRIKPNIILY 484



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 94/203 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           + + LI  LC+L  +D A+ V+  M + G    AITF+ +++ L    +++EA GL   M
Sbjct: 133 SLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEM 192

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P++ +YN ++   C  GN      V +KME+ +   +  TY+ ++   C+   V
Sbjct: 193 VWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLV 252

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EA   L  MVD G      TY  ++     LG   +A +      GR++  DT  F  L
Sbjct: 253 NEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNIL 312

Query: 285 GSKLIGLERFNEANFILKEMNKR 307
              L      +EA  + + M ++
Sbjct: 313 VDGLCKEGMVSEARCVSETMTEK 335



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 97/209 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T+I  LCK      A+RV   M +     + +T++ I+  L + + + EA   
Sbjct: 199 PNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEF 258

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  + PD+  YN +L  +C  G L   + + K+M    +  D  T++ LV G C+
Sbjct: 259 LSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCK 318

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G V EA  +   M + G      TY  +M          +A+K + +  G+    +   
Sbjct: 319 EGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSS 378

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L +     +R NEA  +L EM++++L
Sbjct: 379 YNILINGYCKSKRMNEAKRLLSEMSEKNL 407



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 126/275 (45%), Gaps = 2/275 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN--TENSLSVLSDL 89
           +P +  ++ L+N   +E  ++    L N+           ++N + N   +N  ++++  
Sbjct: 163 QPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVR 222

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                  ++G P    Y+T+I  LCK + ++EA+  +  M + G     +T++ IL    
Sbjct: 223 VFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFC 282

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              ++ EA  L + M    V PD   +N L+   C +G ++    V + M E+    +A 
Sbjct: 283 SLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAY 342

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+AL+ G C   +++EA  +L  M+  G +   S+Y  ++    +     +A + +   
Sbjct: 343 TYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEM 402

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +++  DT  + +L   L  + R  EA  + KEM
Sbjct: 403 SEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEM 437



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 84/165 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S+Y+ LI   CK K+++EA R++  M+E       +T+  ++  L +  R  EA  L
Sbjct: 374 PNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNL 433

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + PDL AY+ LL  +C  G+L     +LK+M E ++  +   Y  L+ G   
Sbjct: 434 FKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFI 493

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           AG++E A  L  ++  DG      TY  ++  LL+ G   +A +F
Sbjct: 494 AGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEF 538



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 128/288 (44%), Gaps = 11/288 (3%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNA-AGHERDLETVRYLLNKRARDCCFNTA 70
           ++ ++  V+ + T+ GA   EP +  Y+ L++    H +  E ++ L     + C  N +
Sbjct: 321 MVSEARCVSETMTEKGA---EPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLS 377

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDI 128
            ++N + N       +++  R L+ + +    P    Y TL+  LC++ +  EAL +   
Sbjct: 378 -SYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKE 436

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G     + +  +L    +   ++EA  L++ M E R+ P++  Y  L+      G 
Sbjct: 437 MCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGK 496

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L     +  K+  + +  D  TY+ ++ G  + G  +EA+   R+M DDG      +Y  
Sbjct: 497 LEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNV 556

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
           ++   L+    + A++ +    G+    D+  F      L+ LE  +E
Sbjct: 557 IIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTF----QMLLDLESHDE 600



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 107/237 (45%), Gaps = 3/237 (1%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEG 132
           F +NT N +S+  D   +  R+ +  PR S   +   +G + K K+   A+ + + M   
Sbjct: 67  FGSNTSNDISI-DDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLF 125

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   +  + + +++ L R   ++ A  +M  M ++ + PD   +N L+   C +G +   
Sbjct: 126 GVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEA 185

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            G+  +M       +  +Y+ ++ G C+ G    A  + R+M  +       TY  ++ +
Sbjct: 186 VGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDS 245

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           L +     +AV+F+     R I  D   + ++      L + NEA  + KEM  R++
Sbjct: 246 LCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNV 302


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 87/165 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y   I   CK++KIDEA+ + D M+  G   +A+T++ ++  L +  R  +A  L
Sbjct: 178 PDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVL 237

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    +SPD+ AY+ LL  +C +GNL     + ++M+   +  D   Y  ++ G CR
Sbjct: 238 FRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCR 297

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           + +V++A  +L R++ +G      TY  ++  L R G   +A++ 
Sbjct: 298 SRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRL 342



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 6/205 (2%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           LI   C L  +D    V     + GF    + F  ++  + R  + E A GL++ M  + 
Sbjct: 81  LINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVG 140

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             PD+   N L+  YC +G +     +   M  + L  D  +Y   + G C+  +++EA 
Sbjct: 141 CVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAM 200

Query: 229 VLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            L   M   G    +V Y+T    +   LR        + +  CG   +  D   + +L 
Sbjct: 201 ELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACG---LSPDILAYSTLL 257

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
                    +E   + +EM +R +K
Sbjct: 258 DGFCKQGNLDEMLVLFQEMQRRLVK 282



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 7/188 (3%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           N F F+ + +   SV     +TL R   GF P    + TLI  +C++ K + A  ++  M
Sbjct: 83  NCFCFLHHVDYGFSVFG---KTLKR---GFKPDVVIFTTLIDGVCRIGKTELAAGLLKEM 136

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G     +T + ++       ++++   +  +M    + PD+ +Y+  +  YC    +
Sbjct: 137 GLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKI 196

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  +M    +  +A TY+ L+   C+A R  +A VL R+M   G S     Y+ +
Sbjct: 197 DEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTL 256

Query: 250 MGALLRLG 257
           +    + G
Sbjct: 257 LDGFCKQG 264



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 77/189 (40%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+AL   + M +       I F+ +LS + R K+ E    L + M+   +  ++   + 
Sbjct: 21  LDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSI 80

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+  +CF  ++     V  K  +     D   +  L+ G CR G+ E A  LL+ M   G
Sbjct: 81  LINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVG 140

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
                 T   +M      G   +  K   +   + +K D   +    +    +E+ +EA 
Sbjct: 141 CVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAM 200

Query: 299 FILKEMNKR 307
            +  EM+ R
Sbjct: 201 ELFDEMSHR 209



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           N +  L +  ++ R L +     P    Y  +I  +C+ +K+ +A  V+  +   G    
Sbjct: 265 NLDEMLVLFQEMQRRLVK-----PDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPD 319

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT-SGVL 196
             T+  ++  L R   + EA  L   M+E    P   +YN LL   C + N T+T   ++
Sbjct: 320 VHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQG-CLQHNDTSTVVQLI 378

Query: 197 KKMEEEKLGADART 210
            +M +    ADA T
Sbjct: 379 HEMADRGFYADAVT 392


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 2/143 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++TL+   CK   IDEALR+ +IM + GF + A T + I S   R  R EEA  L+  M+
Sbjct: 366 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 425

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  V+P++ +++ L+  YC + N      + K ME++       TY+A +   C+ G++E
Sbjct: 426 ERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 485

Query: 226 EAFVLLRRMVDDGQSVLYSTYAH 248
           EA+ L+  M + G  ++  TY +
Sbjct: 486 EAYKLINEMQERG--LMPDTYTY 506



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 1/211 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P    Y+TL+    ++K +     ++ +M +     +  T+  ++   +R  ++EE
Sbjct: 217 KGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEE 276

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L + M +  + PD+  Y  ++   C  GN+     +  +M E +L  +A TY AL+ 
Sbjct: 277 AEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALIN 336

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           GAC+AG ++ A +++  M   G  V    +  +M    + G   +A++   +   +  ++
Sbjct: 337 GACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEI 396

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           D      + S      R  EA  +L  M +R
Sbjct: 397 DAFTCNIIASGFCRSNRREEAKRLLLTMEER 427



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   ++  LI   CK +   EA R+  +M + G   S +T++  +    +  +MEEA+ L
Sbjct: 431 PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKL 490

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  + PD   Y  L+      GN+     +  +M +  L  +  TY  ++ G  +
Sbjct: 491 INEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSK 550

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR +EAF L   M  +G       Y+ ++ +L ++G
Sbjct: 551 DGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVG 587



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 85/204 (41%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y  LI    +  KI+EA ++ D M + G       +  I++   +   M+ A+ L + 
Sbjct: 259 TTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDE 318

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M E R+ P+   Y  L+   C  G + A   ++  M+ + +  +   ++ L+ G C+ G 
Sbjct: 319 MTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGM 378

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           ++EA  L   M   G  +   T   +     R     +A + ++    R +  +   F  
Sbjct: 379 IDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSI 438

Query: 284 LGSKLIGLERFNEANFILKEMNKR 307
           L       + F EA  + K M K+
Sbjct: 439 LIDIYCKEQNFAEARRLFKVMEKK 462



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 87/200 (43%), Gaps = 3/200 (1%)

Query: 88  DLCRTLAR--LDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +LC    R  +D G   R  ++  ++  LCK  ++  A  ++D +   GF  S IT++ +
Sbjct: 170 ELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTL 229

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L+     K +     ++ +M++  V  ++T Y  L+  Y     +     +  +M ++ +
Sbjct: 230 LNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGI 289

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D   Y +++   C+ G ++ AFVL   M +        TY  ++    + G    A  
Sbjct: 290 EPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEM 349

Query: 265 FVMVCGGRDIKLDTELFGSL 284
            V     + + ++  +F +L
Sbjct: 350 MVNDMQSKGVDVNRVIFNTL 369


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 135/314 (42%), Gaps = 21/314 (6%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           LLR    +  +     + +    SG  P+  T   ++ L+        L+  R L +K  
Sbjct: 27  LLRSCTKEGRVDCVSWLCKDMVASGVSPETYT---FNVLIGLLCDSGCLDDARELFDKMP 83

Query: 63  RDCCFNTANTFNFITN-------TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLC 114
              C     +F  +         T   L +L ++ R       GF P K  Y+TLI   C
Sbjct: 84  EKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRL------GFSPNKVVYNTLISSFC 137

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV----S 170
           K  K D+A ++VD M + G     +TF+  +S L    ++ EA  +   M+   V     
Sbjct: 138 KEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQ 197

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P++  YN +L  +C +G L     + +KM+  +   +  +Y+  +LG  R G++ EA ++
Sbjct: 198 PNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLV 257

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG 290
           L+ MVD G      +Y  VM  L + G    A   + +     +  DT  + +L      
Sbjct: 258 LKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCH 317

Query: 291 LERFNEANFILKEM 304
             + +EAN +L+EM
Sbjct: 318 TGKVSEANNVLREM 331



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 7/207 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + YD  I   CK  KI  A RV+  M + G   +  T++ ++  L    ++ E +GL
Sbjct: 466 PDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGL 525

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+E  VSPD++ YN +L++ C  G +     VL +M ++ +  +  ++  L+   C+
Sbjct: 526 IDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCK 585

Query: 221 A---GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           A     V+E F +   +    +++    Y+     LL  G   +A +       R   + 
Sbjct: 586 ACDFSAVDEIFEIALNVCGHKEAL----YSLTFNELLVGGEVVKAKELFETALDRSFDVG 641

Query: 278 TELFGSLGSKLIGLERFNEANFILKEM 304
             L+  L   L   E+ ++A+ IL ++
Sbjct: 642 NFLYKDLIDHLCKDEKLDDASGILHKL 668



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 28/270 (10%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           ++ R  T SG  PD  T   Y  L++   H   +     +L +  RD C     T N + 
Sbjct: 291 MLMRLMTSSGVLPDTVT---YTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILL 347

Query: 78  NTENSLSVLSDLCRTLARL-DKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIM------ 129
            +      +S+    L ++ +KG+   +   + +I  LC   K+D+A+ +V+ M      
Sbjct: 348 YSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSA 407

Query: 130 AEGGFGLS-----------------AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           A G  G S                  I++  I+S L +  R+ EA      M    + PD
Sbjct: 408 ALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPD 467

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
              Y+  + ++C +G +++   VLK ME++      +TY++L++G     ++ E + L+ 
Sbjct: 468 SAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLID 527

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            M + G S   S Y +V+ +L   G    A
Sbjct: 528 EMRERGVSPDVSIYNNVLSSLCEGGRVKDA 557



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 8/199 (4%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++ +    + +Y+  +  L ++ K+ EA  V+  M + G   +  +++ ++  L +   +
Sbjct: 227 KVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVL 286

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  LM +M    V PD   Y  LL  YC  G ++  + VL++M  +    +  T + L
Sbjct: 287 FDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNIL 346

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGR 272
           +    + GR+ EA  LL++M + G  +   T   V+  L   G   +A++ V  M   G 
Sbjct: 347 LYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHG- 405

Query: 273 DIKLDTELFGSLGSKLIGL 291
                +   G+LG+  IGL
Sbjct: 406 -----SAALGNLGNSYIGL 419



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 121/253 (47%), Gaps = 8/253 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNF-ITNTENSLSVL--SDL 89
           P    Y+ L+++   E   +    L+++  +D       TFN  I+   +S  VL  S +
Sbjct: 124 PNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRI 183

Query: 90  CRTLARLDK--GFPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
            R + ++D+  G P+ +   Y+ ++G  CK   ++EA  + + M      ++  +++  L
Sbjct: 184 FRDM-QIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWL 242

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L R  ++ EA  +++ M ++ + P++ +YN ++   C  G L     +++ M    + 
Sbjct: 243 LGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVL 302

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            D  TY  L+ G C  G+V EA  +LR M+ DG S    T   ++ +L + G  ++A + 
Sbjct: 303 PDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEEL 362

Query: 266 VMVCGGRDIKLDT 278
           +     +   +DT
Sbjct: 363 LQKMNEKGYVIDT 375



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 6/188 (3%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R  +  P    Y+ L+    K  ++D    +   M   G      TF+ ++ +L     +
Sbjct: 13  RFPENPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCL 72

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L + M E    P+  ++  L+  YC  G  +    +L +M       +   Y+ L
Sbjct: 73  DDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTL 132

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   C+ G+ ++A  L+  M  DG S    T+   + AL   G   +A +       RD+
Sbjct: 133 ISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIF-----RDM 187

Query: 275 KLDTELFG 282
           ++D E+ G
Sbjct: 188 QID-EVLG 194



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 67/165 (40%)

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ +L   T+  R++    L + M    VSP+   +N L+   C  G L     +  KM 
Sbjct: 24  YNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMP 83

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E+    +  ++  LV G CRAG   +   LL  M   G S     Y  ++ +  + G   
Sbjct: 84  EKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTD 143

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
            A K V       +  D   F +  S L    +  EA+ I ++M 
Sbjct: 144 DAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQ 188


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 122/257 (47%), Gaps = 12/257 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARD------CCFNT-ANTFNFITNTENSLSV 85
           P    Y  L++      +L+T   LL++  +       C +N+  N      N E ++ +
Sbjct: 466 PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKL 525

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           + ++   +A +D   P    Y T+I   C+L  ID+A +++  M + G   + +TF+ ++
Sbjct: 526 MKEM--EVAGID---PDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           +       +E+   L+  M E  + PD   YN L+  +C + ++  T+ + K+M  + + 
Sbjct: 581 NGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVA 640

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            D+ TY+ L+ G C+A  ++EA+ L + M++ G     ++Y  ++    +   + +A + 
Sbjct: 641 PDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEAREL 700

Query: 266 VMVCGGRDIKLDTELFG 282
                G  +  D E++ 
Sbjct: 701 FEEMRGHGLVADGEIYN 717



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 77/166 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI    +  K+ E   +   M   G     +T+  ++ V  +   M  A+ L
Sbjct: 396 PDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSL 455

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M ++ ++P++  Y  L+   C  G L   + +L +M ++ L  +   Y+++V G C+
Sbjct: 456 HNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICK 515

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           AG +E+A  L++ M   G      TY  V+ A  RLG   +A K +
Sbjct: 516 AGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLL 561



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y TLI   CK  ++  A  + + M + G   + +T+  ++  L +   ++ A  L
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANEL 490

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++  +  ++  YN ++   C  GN+     ++K+ME   +  DA TY  ++   CR
Sbjct: 491 LDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G +++A  LL+ M+D G      T+  +M     LG
Sbjct: 551 LGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLG 587



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 113/251 (45%), Gaps = 9/251 (3%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALR 124
           +NT  ++N I  +   L  + +  R L ++D     P   +Y T+I   C L ++ +AL+
Sbjct: 256 WNTT-SYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALK 314

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTR-GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           ++D M   G   +  T++ I+ +L + GK  E    L E+M + ++ PD   Y  L+  +
Sbjct: 315 LMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQ-KIIPDNVVYTTLIHGF 373

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
              G++   +    +M  +K+  D  TY  L+ G  + G+V E   L   M+  G     
Sbjct: 374 FKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDE 433

Query: 244 STYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
            TY  ++    + G    A      MV  G    + T  +G+L   L      + AN +L
Sbjct: 434 VTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVT--YGALIDGLCKHGELDTANELL 491

Query: 302 KEMNKRDLKMG 312
            EM K+ L++ 
Sbjct: 492 DEMRKKGLQLN 502



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 87/214 (40%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
            K  P    Y TLI    KL  +  A +  D M         IT+  ++    +G ++ E
Sbjct: 357 QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIE 416

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
              L   M    + PD   Y  L+  YC  G +     +  +M +  +  +  TY AL+ 
Sbjct: 417 PQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID 476

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+ G ++ A  LL  M   G  +    Y  ++  + + G   QA+K +       I  
Sbjct: 477 GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDP 536

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           D   + ++      L   ++A+ +L+EM  R L+
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQ 570



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 18/194 (9%)

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           + +  E G   +  +++ I+  L R  +++EA  L+  M     +PD+ +Y+ ++  YC 
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD---GQSVL 242
            G L     ++  M+ + L  +  TY++++L  C+ G+  EA  +LR M+       +V+
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVV 365

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL------GSKLIGLERFNE 296
           Y+T  H      +LG+   A K+      + I  D   + +L      G K+I      E
Sbjct: 366 YTTLIH---GFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVI------E 416

Query: 297 ANFILKEMNKRDLK 310
              +  EM  R LK
Sbjct: 417 PQNLFHEMISRGLK 430



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 5/215 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           I Q++ + +    +G  PD  T   Y  +++A     D++    LL +        T  T
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAIT---YTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT 575

Query: 73  FNFITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           FN + N    L +L D  R L   L+KG  P    Y+TL+ + C    ++   ++   M 
Sbjct: 576 FNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMR 635

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G    + T++ ++    + + ++EAW L + M E    P +T+YN L+  +  K    
Sbjct: 636 NQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFX 695

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               + ++M    L AD   Y+  V      G VE
Sbjct: 696 EARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 97/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I  LCK  K+D+A RV+  M   G     + +  ++    +   ++ A+ L
Sbjct: 43  PNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKL 102

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M++ R+ PD  AY  ++   C  G +     V  KM    +  D  TY  L+ G C+
Sbjct: 103 FDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCK 162

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +G +E+AF L  +MV  G +    TY  +   L +LG    A + +    G+ ++L+   
Sbjct: 163 SGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICT 222

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL + L       +A  +++EM
Sbjct: 223 YNSLVNGLCKSGNIRQAVKLMEEM 246



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 77/147 (52%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    + TL+   CK  ++ +A  ++  M + G   + ITF+ +++       +E+   
Sbjct: 252 YPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGER 311

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M E  + P+ T YN L+  YC + N+  T+ + K M    +  D+ TY+ L+ G C
Sbjct: 312 LLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHC 371

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +A  ++EA+ L + M + G ++  S+Y
Sbjct: 372 KARNMKEAWFLHKEMAEKGFNLTASSY 398



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 4/215 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I   C   ++ + L+++  M   G   +  T++ I+ +L +  ++++A  +
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    + PD   Y  L+  +C  GN+ A   +  +ME++++  D   Y A++ G CR
Sbjct: 68  LREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCR 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDT 278
            G++ EA  +  +M   G      TY  ++    + G   +A      MV  G    + T
Sbjct: 128 CGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVT 187

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
             + +L   L  L + + AN +L EM  + L++  
Sbjct: 188 --YTALADGLCKLGQVDTANELLHEMCGKGLQLNI 220



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 97/216 (44%), Gaps = 6/216 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L   LCKL ++D A  ++  M   G  L+  T++ +++ L +   + +A  L
Sbjct: 183 PNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKL 242

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME M+   + PD   +  L+ AYC  G +     +L++M +  L     T++ L+ G C 
Sbjct: 243 MEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA-LLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +G +E+   LL  M++ G     +TY  +M    +R         +  +C  R +  D+ 
Sbjct: 303 SGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMC-ARGVMPDSN 361

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
            +  L           EA F+ KEM ++    GF L
Sbjct: 362 TYNILIKGHCKARNMKEAWFLHKEMAEK----GFNL 393



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  +I  LC+  K+ EA +V + M   G     +T+  ++    +   ME+A+ L
Sbjct: 113 PDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSL 172

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  ++P++  Y  L    C  G +   + +L +M  + L  +  TY++LV G C+
Sbjct: 173 HNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCK 232

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +G + +A  L+  M   G      T+  +M A  + G   +A
Sbjct: 233 SGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKA 274



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 11/212 (5%)

Query: 84  SVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           +V+  LCR   +   DK F         P +  Y TLI   CK  ++++A  + + M + 
Sbjct: 120 AVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQS 179

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   + +T+  +   L +  +++ A  L+  M    +  ++  YN L+   C  GN+   
Sbjct: 180 GLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQA 239

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             ++++ME   +  D  T+  L+   C+ G + +A  LLR M+D G      T+  +M  
Sbjct: 240 VKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNG 299

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
               G      + +     + I  +T  + SL
Sbjct: 300 FCMSGMLEDGERLLAWMLEKGIMPNTTTYNSL 331



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 53/96 (55%)

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           +PD+ +Y+ ++  YC  G L     ++++M+ + L  +  TY++++L  C++G+V++A  
Sbjct: 7   APDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAER 66

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +LR M++ G       Y  ++    +LG    A K 
Sbjct: 67  VLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKL 102



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 7/239 (2%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNK 60
           SL+  L     I Q+V +      +G +PD  T +   D         +  E +R +L++
Sbjct: 225 SLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDR 284

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLA-RLDKGF-PRKSAYDTLIGRLCKLKK 118
             +     T  TFN + N      +L D  R LA  L+KG  P  + Y++L+ + C    
Sbjct: 285 GLQP----TVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNN 340

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +     +   M   G    + T++ ++    + + M+EAW L + M E   +   ++YN 
Sbjct: 341 MRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNS 400

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
           ++  +  K  ++    + ++M  E + ADA  Y+  V  +   G +E A  L    +++
Sbjct: 401 IIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAIEN 459


>gi|357131120|ref|XP_003567190.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Brachypodium distachyon]
          Length = 463

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 105/208 (50%), Gaps = 9/208 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI  LC+   +  AL V+ +M + G     I+F+ +L+   +  RM++A  +
Sbjct: 213 PSVYSYNILIRALCQKHDLSAALNVITLMEKCGVLPDNISFNTLLNGFYQNGRMDDAEAV 272

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E+MK   + PD  +YN  L     +G +     V+++ME+E    D  +Y+ L+ G C 
Sbjct: 273 WEMMKGWNLEPDTKSYNAKLRGLVAEGRIEDAVAVVERMEKEGPKPDTVSYNELIRGYCS 332

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG------RDI 274
           AGR+E+A  L   +V +  +    TY  ++  LL+ G    AV++   C G      ++ 
Sbjct: 333 AGRLEDAKKLYDGLVKNECAPNRGTYETLLPRLLQAGELDCAVRY---CHGLLSPNTKNC 389

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILK 302
           ++D  L   + + L+   R +EA  I++
Sbjct: 390 RVDRSLLQDVVTTLVEASRVDEAAKIVE 417



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 19/202 (9%)

Query: 102 RKSAYDTLIG---RLCKLKKIDEALRVVDIMAEGGFGLSA-ITFHPILS----------V 147
           R+ + +T++G   R  +  K   A R++ +         A  TFH + +          V
Sbjct: 125 RQDSIETILGAQKRFLETSKEGFATRLIGLYGRAAMPAQASATFHELPAQLKCTMTLNAV 184

Query: 148 LTRGKRMEEAWGLMEVMKEIRVS-----PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
           LT   + +E   L    +EI VS     P + +YN L+ A C K +L+A   V+  ME+ 
Sbjct: 185 LTAYYQAKEFDALATAFQEISVSHPLVVPSVYSYNILIRALCQKHDLSAALNVITLMEKC 244

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            +  D  +++ L+ G  + GR+++A  +   M          +Y   +  L+  G    A
Sbjct: 245 GVLPDNISFNTLLNGFYQNGRMDDAEAVWEMMKGWNLEPDTKSYNAKLRGLVAEGRIEDA 304

Query: 263 VKFVMVCGGRDIKLDTELFGSL 284
           V  V        K DT  +  L
Sbjct: 305 VAVVERMEKEGPKPDTVSYNEL 326


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L KG    S ++  I  LC+  +I +A  V D M + GF  + IT++ +LS L  G RM 
Sbjct: 43  LVKGLCDISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMS 102

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  L E M +   SPD+  YN LL  +C  G L     +     +     D  TY+AL+
Sbjct: 103 DAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALI 162

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G C+A +++EA  +L+RMV +       TY  ++  L + G   +A
Sbjct: 163 NGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEA 209



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 3/200 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y   I  LCK  ++++AL ++  M E G     ++ + +++ L + KR++EA  L
Sbjct: 326 PDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVL 385

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+    SP+  ++N L+   C  G         K+M +  +     TY+ LV G C+
Sbjct: 386 LSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 445

Query: 221 A---GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           A   GR++EA  L   M++ G+     TY+ ++  L + G    A + +     +    +
Sbjct: 446 ARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPN 505

Query: 278 TELFGSLGSKLIGLERFNEA 297
              + SL S L GL++ +EA
Sbjct: 506 VYTYNSLISGLCGLDKVDEA 525



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 3/226 (1%)

Query: 33  PTSAYYDDLVNAAGHE-RDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           P    Y  L++    E R LE+ R LL K   + C     ++N + +       +S+  +
Sbjct: 220 PNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALK 279

Query: 92  TLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                L +G+ P    Y+ LI  L K  +++EA  +   + + G    AIT+   +  L 
Sbjct: 280 LFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLC 339

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  R+E+A  +++ M E    PD+ ++N ++   C +  +     +L  ME +    +A 
Sbjct: 340 KAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAI 399

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +++ L+ G CRAG+ ++A    + M+  G      TY  ++  L +
Sbjct: 400 SFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 445



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 24/243 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ LVN       ++  R L+  +             F  N     +++S LCR 
Sbjct: 188 PDVVTYNSLVNGLCKNGRVDEARMLIVDKG------------FSPNVITYSTLISGLCRE 235

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L RL+               P   +Y+ LI  L + + + EAL++   +   G+     T
Sbjct: 236 LRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPT 295

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++  L +  R+ EA+ L   + +  + PD   Y   +   C  G +     +LK M+
Sbjct: 296 YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMD 355

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E+    D  +++A++ G C+  RV+EA VLL  M   G S    ++  ++    R G + 
Sbjct: 356 EKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWK 415

Query: 261 QAV 263
           +A+
Sbjct: 416 KAM 418



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 3/200 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++ +I  LCK K++DEA  ++  M   G   +AI+F+ ++    R  + ++A   
Sbjct: 361 PDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTT 420

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYC---FKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            + M +  V P +  YN L+   C    +G +     +   M E+    D  TY AL+ G
Sbjct: 421 FKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDG 480

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             +AG++++A  LL  M   G      TY  ++  L  L    +A++  +    +    D
Sbjct: 481 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPD 540

Query: 278 TELFGSLGSKLIGLERFNEA 297
           T  +G++ S L   E  ++A
Sbjct: 541 TITYGTIISALCKQEMVDKA 560



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/259 (20%), Positives = 108/259 (41%), Gaps = 8/259 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +  ++L+ +   + G  PD  +   ++ ++N    E+ ++    LL+      C   A +
Sbjct: 344 VEDALLMLKDMDEKGCVPDVVS---HNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAIS 400

Query: 73  FNFITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLK---KIDEALRVVD 127
           FN +   +           T    L +G  P    Y+ L+  LCK +   +I EA+ + D
Sbjct: 401 FNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFD 460

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M E G     +T+  ++  L +  ++++A  L+  M+     P++  YN L++  C   
Sbjct: 461 AMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLD 520

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            +     +   M E+    D  TY  ++   C+   V++A  L    ++ G       Y 
Sbjct: 521 KVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYF 580

Query: 248 HVMGALLRLGYYAQAVKFV 266
            ++  L  +    +A+K +
Sbjct: 581 SLIDGLCAVARVDEALKLL 599



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 3/202 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P       L+  L K  KI++A R V+ ++ +G   +S  TF+  +S L R  R+ +A  
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDIS--TFNIYISGLCRASRIGDAQT 71

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M++    P+   YN LL+  C  G ++    + ++M +     D  TY+ L+ G C
Sbjct: 72  VFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G+++EA  +    V  G      TY  ++    +     +A + +       +  D  
Sbjct: 132 KVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVV 191

Query: 280 LFGSLGSKLIGLERFNEANFIL 301
            + SL + L    R +EA  ++
Sbjct: 192 TYNSLVNGLCKNGRVDEARMLI 213



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 1/172 (0%)

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           A T   +L  L +  ++E+A   +E +  ++   D++ +N  ++  C    +     V  
Sbjct: 16  AYTVGILLRSLLKSGKIEKAHRFVEQLL-VKGLCDISTFNIYISGLCRASRIGDAQTVFD 74

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            M +     +  TY+AL+ G C  GR+ +A  L  RM+  G S    TY  ++    ++G
Sbjct: 75  GMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVG 134

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              +A+K       R    D   + +L +     ++ +EA  IL+ M    L
Sbjct: 135 KLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESL 186



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 94  ARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           A ++KG  P    Y  LI  L K  K+D+A R++  M   G   +  T++ ++S L    
Sbjct: 461 AMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLD 520

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           +++EA  L   M E    PD   Y  +++A C +  +     +     E  +   +  Y 
Sbjct: 521 KVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYF 580

Query: 213 ALVLGACRAGRVEEAFVLLR 232
           +L+ G C   RV+EA  LL+
Sbjct: 581 SLIDGLCAVARVDEALKLLQ 600



 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 5/152 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           I +++ +  +  + G  PD  T   Y  L++  G    L+  R LL       C     T
Sbjct: 452 IKEAITLFDAMIEKGRVPDVVT---YSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYT 508

Query: 73  FNFITNTENSLSVLSDLCRT-LARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           +N + +    L  + +     +A ++KG  P    Y T+I  LCK + +D+AL + D   
Sbjct: 509 YNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSL 568

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           E G   ++  +  ++  L    R++EA  L++
Sbjct: 569 EAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 113/231 (48%), Gaps = 5/231 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + +LS+L D+     R     P    Y+TL+    +  ++D A R+V +M EGG   + +
Sbjct: 207 KEALSILRDM-----RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLV 261

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF+ +++ + +  +ME+A  + + M    ++PD  +YN L+  YC  G       V  +M
Sbjct: 262 TFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEM 321

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            ++ +  D  T+ +L+   C+AG +E A  L+R+M + G  +   T+  ++    + G+ 
Sbjct: 322 TQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFL 381

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             A+  V       IK     + +L +    + R +EA  +L EM  + LK
Sbjct: 382 DDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLK 432



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 107/236 (45%), Gaps = 17/236 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
           +P    ++ +VN       +E  R + ++  R+       ++N +         +  +LS
Sbjct: 257 KPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALS 316

Query: 85  VLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           V +++ +      KG  P    + +LI  +CK   ++ A+ +V  M E G  ++ +TF  
Sbjct: 317 VFAEMTQ------KGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTA 370

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   +++A   +  MK+ R+ P +  YN L+  YC  G +     +L +ME + 
Sbjct: 371 LIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKG 430

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRL 256
           L  D  TY  ++   C+      AF L ++M++ G    ++ YS+   V+    RL
Sbjct: 431 LKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRL 486



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 7/209 (3%)

Query: 83  LSVLSDLCRTLAR------LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           L  LSD   T AR      L  G  P    Y+ L+  LC      EAL ++  M   G G
Sbjct: 163 LLALSDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCG 222

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +T++ +++   R   ++ A  L+ +M+E  + P+L  +N ++   C  G +     V
Sbjct: 223 PNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKV 282

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             +M  E L  D  +Y+ LV G C+AG   EA  +   M   G      T+  ++  + +
Sbjct: 283 FDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCK 342

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            G   +AV  V     R ++++   F +L
Sbjct: 343 AGNLERAVTLVRQMRERGLQMNEVTFTAL 371



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 69/153 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C + ++DEA  ++  M   G     +T+  I+S   +      A+ L
Sbjct: 398 PSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFEL 457

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  V PD   Y+ L+   C +  L+    + K M +  L  D  TY +L+ G C+
Sbjct: 458 NQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCK 517

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            G VE A  L  +MV  G      TY+ ++  L
Sbjct: 518 EGNVESALSLHDKMVKAGVLPDVVTYSVLINGL 550



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 3/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT-RGKRMEEAWG 159
           P   AY+ ++  L     +  A R  D M   G   +  T++ ++  L  RG R +EA  
Sbjct: 154 PSVLAYNAVLLALSD-ASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHR-KEALS 211

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M+     P++  YN L+ A+   G +     ++  M E  L  +  T++++V G C
Sbjct: 212 ILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMC 271

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +AG++E+A  +   MV +G +    +Y  ++G   + G   +A+        + I  D  
Sbjct: 272 KAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVV 331

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            F SL   +        A  ++++M +R L+M
Sbjct: 332 TFTSLIHVMCKAGNLERAVTLVRQMRERGLQM 363



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 63/134 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I   CK      A  +   M E G    AIT+  ++ VL   KR+ +A  L
Sbjct: 433 PDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVL 492

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M ++ + PD   Y  L+  +C +GN+ +   +  KM +  +  D  TY  L+ G  +
Sbjct: 493 FKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSK 552

Query: 221 AGRVEEAFVLLRRM 234
           + R  EA  LL ++
Sbjct: 553 SARAMEAQQLLFKL 566



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 76/160 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  LI   CK   +D+AL  V  M +     S + ++ +++      RM+EA  L+  M+
Sbjct: 368 FTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEME 427

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+  Y+ +++AYC   +  +   + ++M E+ +  DA TY +L+   C   R+ 
Sbjct: 428 AKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLS 487

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +A VL + M+  G      TY  ++    + G    A+  
Sbjct: 488 DAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSL 527



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 15/153 (9%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +LI   CK   ++ AL + D M + G     +T+  +++ L++  R  EA  L
Sbjct: 503 PDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQL 562

Query: 161 MEVMKEIRVSPDLTAYNYL---------------LTAYCFKGNLTATSGVLKKMEEEKLG 205
           +  +      P  T Y+ L               L  +C KG +     V + M +    
Sbjct: 563 LFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWN 622

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            D   Y  L+ G CRAG V +A    ++M+  G
Sbjct: 623 LDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGG 655


>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
          Length = 456

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 120/281 (42%), Gaps = 8/281 (2%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVL 86
           P  PT+  +  ++++ GH R  +    + N+  R  C  T   +N + +      + +  
Sbjct: 141 PLSPTT--FSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTGA 198

Query: 87  SDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
             L R +AR  KG  P ++ + TL+   C   K+ EA   +D MA  G          ++
Sbjct: 199 YKLLRRMAR--KGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDLLV 256

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L R   +E+A      M +  + PD+  +N L  A C  G++     +L       L 
Sbjct: 257 DGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADASSRGLC 316

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            D  TY  ++    + G++EEAF L    V+DG     S YA ++ AL + G +A A  F
Sbjct: 317 PDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAFAF 376

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
                 +    +  ++  L    +   RF EA   L EM++
Sbjct: 377 FGDMKTKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSE 417



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 71/177 (40%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G  LS  TF  ++S     +  ++A  +   +           YN LL A C  GN T  
Sbjct: 139 GLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTGA 198

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L++M  + +  D  T+  LV   C AG+++EA   L  M   G          ++  
Sbjct: 199 YKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDLLVDG 258

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           L+R G+  QA  F +      I  D   F SL   L      + A  +L + + R L
Sbjct: 259 LVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADASSRGL 315



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 75/193 (38%), Gaps = 18/193 (9%)

Query: 39  DDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSVLSDLCR 91
           D LV A GH   LE  +    +  ++       TFN +        + + ++S+L+D   
Sbjct: 257 DGLVRA-GH---LEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADAS- 311

Query: 92  TLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
                 +G  P  S Y  ++  + K+ KI+EA R+     E G       +  I+  L +
Sbjct: 312 -----SRGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAIIKALCK 366

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R  +A+     MK     P+   Y  L+      G     +  L +M E      A T
Sbjct: 367 AGRFADAFAFFGDMKTKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFTPRAPT 426

Query: 211 YDALVLGACRAGR 223
           + A+V G    G+
Sbjct: 427 FSAVVDGLRHCGK 439



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 63/159 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + +++L   LC    +D A+ ++   +  G      T+  +L  + +  ++EEA+ L
Sbjct: 282 PDVATFNSLAEALCNAGDVDFAVSLLADASSRGLCPDISTYKVMLPAVAKVGKIEEAFRL 341

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                E    P  + Y  ++ A C  G           M+ +    +   Y  LV    R
Sbjct: 342 FYAAVEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKTKGHPPNRPVYVMLVKMCVR 401

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            GR  EA   L  M + G +    T++ V+  L   G +
Sbjct: 402 GGRFVEAANYLVEMSEAGFTPRAPTFSAVVDGLRHCGKH 440


>gi|259489858|ref|NP_001159344.1| uncharacterized protein LOC100304439 [Zea mays]
 gi|223943533|gb|ACN25850.1| unknown [Zea mays]
          Length = 322

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 8/282 (2%)

Query: 29  FPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSV 85
            P  PT+  +  ++++ GH R  +    + N+  R  C  T   +N + +      + + 
Sbjct: 6   LPLSPTT--FSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTG 63

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
              L R +AR  KG  P ++ + TL+   C   K+ EA   +D MA  G          +
Sbjct: 64  AYKLLRRMAR--KGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDLL 121

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L R   +E+A      M +  + PD+  +N L  A C  G++     +L       L
Sbjct: 122 VDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADASSRGL 181

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY  ++    + G++EEAF L    V+DG     S YA ++ AL + G +A A  
Sbjct: 182 CPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAFA 241

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           F      +    +  ++  L    +   RF EA   L EM++
Sbjct: 242 FFGDMKTKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSE 283



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 71/177 (40%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G  LS  TF  ++S     +  ++A  +   +           YN LL A C  GN T  
Sbjct: 5   GLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTGA 64

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L++M  + +  D  T+  LV   C AG+++EA   L  M   G          ++  
Sbjct: 65  YKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDLLVDG 124

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           L+R G+  QA  F +      I  D   F SL   L      + A  +L + + R L
Sbjct: 125 LVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADASSRGL 181



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 48/123 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y  ++  + K+ KI+EA R+     E G       +  I+  L +  R  +A+  
Sbjct: 183 PDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAFAF 242

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK     P+   Y  L+      G     +  L +M E      A T+ A+V G   
Sbjct: 243 FGDMKTKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFTPRAPTFSAVVDGLRH 302

Query: 221 AGR 223
            G+
Sbjct: 303 CGK 305



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 63/160 (39%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  + +++L   LC    +D A+ ++   +  G      T+  +L  + +  ++EEA+ 
Sbjct: 147 LPDVATFNSLAEALCNAGDVDFAVSLLADASSRGLCPDISTYKVMLPAVAKVGKIEEAFR 206

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L     E    P  + Y  ++ A C  G           M+ +    +   Y  LV    
Sbjct: 207 LFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKTKGHPPNRPVYVMLVKMCV 266

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           R GR  EA   L  M + G +    T++ V+  L   G +
Sbjct: 267 RGGRFVEAANYLVEMSEAGFTPRAPTFSAVVDGLRHCGKH 306


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 121/275 (44%), Gaps = 5/275 (1%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           ++ ++  V  + TK GA   EP +  Y+ L++       ++  + +L+      C    +
Sbjct: 317 MVSEARCVFEAMTKKGA---EPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVH 373

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           ++N + N       L +    L  + +    P    Y TL+  LC++ +  EAL +   M
Sbjct: 374 SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM 433

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G     +T+  +L  L +   ++EA  L++ M+E ++ PD+  YN L+      G L
Sbjct: 434 CSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKL 493

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  K+  + +    RTY  ++ G  + G  +EA+ L R+M DDG      +Y  +
Sbjct: 494 EVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVI 553

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +   L+    + A++ +    G+    D+  F  L
Sbjct: 554 IQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQML 588



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+  LCK   + EA  V + M + G   +A T++ ++       +M+EA  +
Sbjct: 300 PNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKV 359

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M +   +P + +YN L+  YC +  L     +L +M E++L  D  TY  L+ G C+
Sbjct: 360 LDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQ 419

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR +EA  L + M   G      TY+ ++  L + G+  +A+K +       I+ D  L
Sbjct: 420 VGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVL 479

Query: 281 FGSL 284
           +  L
Sbjct: 480 YNIL 483



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 93/203 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           + + LI  LC+L  +  A+ V+  M + G    AITF+ +++       ++EA GL   M
Sbjct: 129 SLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEM 188

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 PD+ +Y+ ++   C  GN +    +L+KMEE+    +   Y  ++   C+   V
Sbjct: 189 VRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLV 248

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A  LL  MVD G      TY+ ++     LG+  +A        GR++  +T  F  L
Sbjct: 249 NDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTIL 308

Query: 285 GSKLIGLERFNEANFILKEMNKR 307
              L      +EA  + + M K+
Sbjct: 309 VDGLCKEGMVSEARCVFEAMTKK 331



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 124/277 (44%), Gaps = 6/277 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           +P +  ++ L+N    E +++    L N+  R        +++ + N      + S+   
Sbjct: 159 QPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQ 218

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R +   +KG  P   AY T+I  LCK   +++A+ ++  M + G     +T+  IL  
Sbjct: 219 LLRKME--EKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHG 276

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
                 + EA  L   M    V P+   +  L+   C +G ++    V + M ++    +
Sbjct: 277 FCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPN 336

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A TY+AL+ G C   +++EA  +L  MVD G + +  +Y  ++    +     +A   ++
Sbjct: 337 AYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLV 396

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
               +++  DT  + +L   L  + R  EA  + KEM
Sbjct: 397 EMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM 433



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 115/281 (40%), Gaps = 2/281 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  ++N      +      LL K     C      +  I ++    ++++D   
Sbjct: 194 QPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMD 253

Query: 92  TLARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+ + D+G P     Y T++   C L  ++EA  + + M       + +TF  ++  L 
Sbjct: 254 LLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLC 313

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   + EA  + E M +    P+   YN L+  YC    +     VL  M ++       
Sbjct: 314 KEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVH 373

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           +Y+ L+ G C+  R++EA  LL  M +   +    TY+ +M  L ++G   +A+      
Sbjct: 374 SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM 433

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               +  D   + +L   L      +EA  +LK M +  ++
Sbjct: 434 CSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIE 474



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 5/241 (2%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDI 128
           N   F++N  NS+S+  D   +  R+ +  PR S   +   +G + K K+    + + + 
Sbjct: 61  NNGGFLSN--NSISI-DDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQ 117

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   +  + + +++ L R   +  A  ++  M ++ + PD   +N L+   C +G 
Sbjct: 118 MDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGE 177

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +    G+  +M       D  +Y  ++ G C++G    A  LLR+M + G       Y  
Sbjct: 178 IKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTT 237

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++ +L +      A+  +     R I  D   + ++      L   NEA  +  EM  R+
Sbjct: 238 IIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRN 297

Query: 309 L 309
           +
Sbjct: 298 V 298


>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61400-like [Glycine max]
          Length = 498

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 23/251 (9%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           K G +PD  T A   D++   G   DL         +A   CF     F+ + N     S
Sbjct: 128 KPGLYPDVVTFATLIDVLRKMG---DL---------KAAXNCFAYMAKFDVVPNGHAYNS 175

Query: 85  VLSDLCRTLARLDKGFPRKS-----------AYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           ++   C+    L+  + R              Y+ LI  LC + +++EA+ +++ M E  
Sbjct: 176 LIHGYCKAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVE 235

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
              +++ F+ ++    +   ME+A  +   M E  + P++  ++ L+  +C KGN+ A  
Sbjct: 236 VFANSVXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAM 295

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           G+  +M  + +  D  TY AL+ G C+ G  +EAF L + M+D G S    T + V+  L
Sbjct: 296 GLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGL 355

Query: 254 LRLGYYAQAVK 264
           L+ G    A+K
Sbjct: 356 LKDGRTNDAIK 366



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+     +  +     +   M + G     +TF  ++ VL +   ++ A   
Sbjct: 98  PNLYTYKTLMDGYSMMGDVKRVFYLYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNC 157

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V P+  AYN L+  YC  G+L     +  +ME   + +D  TY+ L+ G C 
Sbjct: 158 FAYMAKFDVVPNGHAYNSLIHGYCKAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCD 217

Query: 221 AGRVEEAFVLLRRM 234
             R+EEA  L+ +M
Sbjct: 218 ICRLEEAMGLMEKM 231


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 133/308 (43%), Gaps = 6/308 (1%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGH-ERDLETVRYLLNKR 61
           L+R L     +  +  V ++  K G  PD       ++L+N  G  +R  E V      R
Sbjct: 307 LIRGLGKSGRVEDAYGVYKNMLKDGCKPD---VVLMNNLINILGRSDRLKEAVELFEEMR 363

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKI 119
             +C  N       I +     +  S+    L R+ K    P    Y  LI   CK  ++
Sbjct: 364 LLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRV 423

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           ++AL +++ M E GF      +  +++ L + KR E A  L + +KE   S  +  Y  +
Sbjct: 424 EKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVM 483

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +  +   G      G+  +M++     D   Y+AL+ G  RA  ++EAF L R M ++G 
Sbjct: 484 IKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGC 543

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +   +++  ++  L R G   +A++         IK D   + ++   L     F EA  
Sbjct: 544 NPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATK 603

Query: 300 ILKEMNKR 307
           ++KEMN +
Sbjct: 604 LMKEMNSK 611



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 131/317 (41%), Gaps = 47/317 (14%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARD-CCFNTANTFNFITNTENSLSVLSDLCR 91
           PT+  Y+ ++     E   E V  L N+   +  CF    T++ + +    L+      R
Sbjct: 193 PTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVR 252

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIM-------------------- 129
               + +    P    Y TL+G   KL K++EAL +V  M                    
Sbjct: 253 LFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLG 312

Query: 130 ----AEGGFGL-----------SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
                E  +G+             +  + ++++L R  R++EA  L E M+ +  +P++ 
Sbjct: 313 KSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVV 372

Query: 175 AYNYLLTA-YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
            YN ++ + +  K   +  S  L++M+++ +   + TY  L+ G C+  RVE+A +LL  
Sbjct: 373 TYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEE 432

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV----CGGRDIKLDTELFGSLGSKLI 289
           M + G     + Y  ++ +L +   Y  A +        CG   +++   +    G    
Sbjct: 433 MDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGK--- 489

Query: 290 GLERFNEANFILKEMNK 306
              RFNEA  +  EM K
Sbjct: 490 -CGRFNEAMGLFNEMKK 505



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 95/241 (39%), Gaps = 36/241 (14%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + +++L+     + G FP  P  A Y  L+N+ G  +  E    L  +   +C       
Sbjct: 423 VEKALLLLEEMDEKG-FP--PCPAAYCSLINSLGKAKRYEAANELFQELKENC------- 472

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
                                     G      Y  +I    K  + +EA+ + + M + 
Sbjct: 473 --------------------------GSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKL 506

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G       ++ +++ + R   M+EA+ L   M+E   +PD+ ++N +L      G     
Sbjct: 507 GCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRA 566

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  KM+   +  DA +Y+ ++    RAG  EEA  L++ M   G      TY+ ++ A
Sbjct: 567 MEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEA 626

Query: 253 L 253
           +
Sbjct: 627 V 627



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 3/172 (1%)

Query: 66  CFNTANTFNFIT---NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122
           C  TA T+N +      E     + +L   +      FP    Y  LI    KL + D A
Sbjct: 191 CRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSA 250

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           +R+ D M E G   +A  +  ++ +  +  ++EEA  L+  M+  R  P +  Y  L+  
Sbjct: 251 VRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRG 310

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
               G +    GV K M ++    D    + L+    R+ R++EA  L   M
Sbjct: 311 LGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEM 362


>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 605

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 8/228 (3%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
            FPD   +  Y+ +++    +  L   R LL     +  F   NTFN + +    L  L 
Sbjct: 79  CFPD---NVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFNILVSGYCKLGWLK 135

Query: 88  DLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           +    +  + +    P    Y TLIG LCK  KIDEA R+ D M         +T++ ++
Sbjct: 136 EAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLI 195

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           +         + + L++ M+   V P+   YN ++  Y  +G +      L+KMEE    
Sbjct: 196 NGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFS 255

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVM 250
            D  T++ L  G C+AGR+ EAF ++  M   G    SV  +T  H +
Sbjct: 256 PDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTL 303



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 142/309 (45%), Gaps = 11/309 (3%)

Query: 4   LRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR 63
           L + P+K   P   L    F+       E  +  ++ L+     E  L     L+ K   
Sbjct: 20  LVRYPSK---PSVYLSKAIFSDVIKLGVEVNTNTFNILICGCCIENKLSEAIGLIGKMKH 76

Query: 64  DCCFNTANTFNFITNT---ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKID 120
             CF    ++N I +    +  L+   DL   +   +  FP ++ ++ L+   CKL  + 
Sbjct: 77  FSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKN-NGLFPNRNTFNILVSGYCKLGWLK 135

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA  V+DIMA         T+  ++  L +  +++EA+ L + M+ +++ P +  YN L+
Sbjct: 136 EAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLI 195

Query: 181 TAYCFKGNLTATSG--VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
              CF+ + ++  G  ++ +ME + +  +A TY+ +V    + G+++ A   LR+M + G
Sbjct: 196 NG-CFECS-SSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESG 253

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            S    T+  +     + G  ++A + +     + +K+++    ++   L G  + ++A 
Sbjct: 254 FSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAY 313

Query: 299 FILKEMNKR 307
            +L   +KR
Sbjct: 314 KLLSSASKR 322



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y T+IG LC+  K D+++   + + E G      T++ I+    R  ++++A+ 
Sbjct: 356 IPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFH 415

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M +    PDL   N L+   C +G L     + K    +    DA T++ ++ G C
Sbjct: 416 FRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLC 475

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             GR EEAF LL  M +        T+  ++ AL   G   +A +F+
Sbjct: 476 EEGRFEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAEEFM 522



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 4/246 (1%)

Query: 69  TANTFNFI---TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
             NTFN +      EN LS    L   +      FP   +Y+T++  LCK  K++EA  +
Sbjct: 47  NTNTFNILICGCCIENKLSEAIGLIGKMKHFS-CFPDNVSYNTILDVLCKKGKLNEARDL 105

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           +  M   G   +  TF+ ++S   +   ++EA  ++++M    V PD+  Y  L+   C 
Sbjct: 106 LLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCK 165

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G +     +  +ME  KL     TY+ L+ G        + F L+  M   G      T
Sbjct: 166 DGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNAVT 225

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y  V+   ++ G    A   +          D   F +L +      R +EA  ++ EM+
Sbjct: 226 YNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMS 285

Query: 306 KRDLKM 311
           ++ LKM
Sbjct: 286 RKGLKM 291



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 3/153 (1%)

Query: 88  DLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           D C  L  L+ G  P ++ Y+T+I   C+  ++D+A    + M +  F     T + ++ 
Sbjct: 380 DKCNEL--LESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKMVKKSFKPDLFTCNILVR 437

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L     +++A  L +       + D   +N +++  C +G       +L +MEE+KLG 
Sbjct: 438 GLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCEEGRFEEAFDLLAEMEEKKLGP 497

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           D  T++A++     AGR++EA   +  +V+ G+
Sbjct: 498 DCYTHNAILSALADAGRMKEAEEFMSGIVEQGK 530



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 113/279 (40%), Gaps = 9/279 (3%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R   +SG  PD  T   ++ L N       L     ++++ +R      + T N I +T 
Sbjct: 247 RKMEESGFSPDCVT---FNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTL 303

Query: 81  NSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
                L D  + L+   K   F  + +Y TLI    K+ K        D M E     S 
Sbjct: 304 CGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKVGKS----XXWDEMKEKEIIPSI 359

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           IT+  ++  L R  + +++      + E  + PD T YN ++  YC +G +        K
Sbjct: 360 ITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFHFRNK 419

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M ++    D  T + LV G C  G +++A  L +  +  G+++   T+  ++  L   G 
Sbjct: 420 MVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCEEGR 479

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           + +A   +     + +  D     ++ S L    R  EA
Sbjct: 480 FEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEA 518



 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 37/196 (18%), Positives = 74/196 (37%), Gaps = 31/196 (15%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++    K  K+D A   +  M E GF    +TF+ + +   +  R+ EA+ +
Sbjct: 221 PNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRM 280

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNL------------------------------- 189
           M+ M    +  +    N +L   C +  L                               
Sbjct: 281 MDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFK 340

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
              S    +M+E+++     TY  ++ G CR+G+ +++      +++ G     +TY  +
Sbjct: 341 VGKSXXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTI 400

Query: 250 MGALLRLGYYAQAVKF 265
           +    R G   +A  F
Sbjct: 401 ILGYCREGQVDKAFHF 416


>gi|125533078|gb|EAY79643.1| hypothetical protein OsI_34787 [Oryza sativa Indica Group]
          Length = 631

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 8/233 (3%)

Query: 69  TANTFNFITNTENSLSVLSDLCRTLA-RLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVV 126
           +A + N +      L+  S+L + L   L  G+   SA +  LI RLC+  K+DEA+R++
Sbjct: 208 SAASLNAVFACCTKLAATSELLQLLGFTLVSGYQLTSAMWTCLIARLCREGKLDEAIRML 267

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   G   + +T+ PI+  L R  R + A  L   M     SPDL  +N L+      
Sbjct: 268 AKMLASGSPPTVVTYTPIVRALYRAGRHDIATELFASMSSTNCSPDLVLHNVLMDCMTKD 327

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
               A  GV   + E ++  DA T   LV    RA  +     LL R+  D   + Y   
Sbjct: 328 KRYDAALGVYLNLHESQMKPDAYTLSTLV----RALHLSRNVSLLPRLFLDSADIPYDLV 383

Query: 247 A--HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           A   V+ AL + G+ +QAV+F +     DI+ D+  +  L   L  L R + A
Sbjct: 384 ACNSVLNALCKSGFPSQAVQFFINMIKCDIRPDSYSYVGLLDSLCQLGRIDHA 436



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 15/167 (8%)

Query: 85  VLSDLCRTLARLDKGF----------PRKSAYDTLIGRLCKLKKIDE---ALRVVDIMAE 131
           +L  LC+ L R+D             P  +AY      LC L K      AL +++    
Sbjct: 423 LLDSLCQ-LGRIDHAINVYHSIVSSDPDSNAY-VHAAILCGLVKKGHNRMALMILNEAVR 480

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
             + L A+ +  +L  L +   +EEA  L + MK   ++ +   YN +L   C   +  A
Sbjct: 481 QNYALDAVCYTVVLHGLLQAHLIEEACMLFDKMKRSGMASNTCTYNIMLRGLCRTRDTHA 540

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
               L++ME   +  D+ +Y+ LV+   +   +  A  L+R MV+ G
Sbjct: 541 LKWFLREMECSDVEMDSISYNILVVFLIKLQHISSATALVREMVNLG 587



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 99/253 (39%), Gaps = 68/253 (26%)

Query: 84  SVLSDLCRTLARLDKGFPRKS-----------------AYDTLIGRLCKLKKIDEALRVV 126
           SVL+ LC++      GFP ++                 +Y  L+  LC+L +ID A+ V 
Sbjct: 387 SVLNALCKS------GFPSQAVQFFINMIKCDIRPDSYSYVGLLDSLCQLGRIDHAINV- 439

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY--LLTAYC 184
                         +H I+S                        PD  AY +  +L    
Sbjct: 440 --------------YHSIVSS----------------------DPDSNAYVHAAILCGLV 463

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            KG+      +L +   +    DA  Y  ++ G  +A  +EEA +L  +M   G +    
Sbjct: 464 KKGHNRMALMILNEAVRQNYALDAVCYTVVLHGLLQAHLIEEACMLFDKMKRSGMASNTC 523

Query: 245 TYAHVMGALLRLGYYAQAVKFV---MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
           TY  ++  L R      A+K+    M C   D+++D+  +  L   LI L+  + A  ++
Sbjct: 524 TYNIMLRGLCR-TRDTHALKWFLREMECS--DVEMDSISYNILVVFLIKLQHISSATALV 580

Query: 302 KEMNKRDLKMGFK 314
           +EM    +++  K
Sbjct: 581 REMVNLGMELSAK 593


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR-----T 92
           Y+ L++       ++    L  +   DCC+    T+          +++  LCR      
Sbjct: 261 YNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYT---------ALIKGLCRKNVHKA 311

Query: 93  LARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +  LD+       P    Y++LI   C+   +D A R++ +M E G      T+   +  
Sbjct: 312 MGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDF 371

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L +  R+EEA  L + + E  VS ++  Y+ L+  YC  G +     + +KM  +    +
Sbjct: 372 LCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPN 431

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           A T++AL+ G C AG ++EA  L  +MV  G      T+  ++G +L+ G +  A K
Sbjct: 432 AYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHK 488



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 1/208 (0%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D  +P    Y  LI  LC+ K + +A+ ++D M E       IT++ +++   R   ++ 
Sbjct: 287 DCCYPNVYTYTALIKGLCR-KNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDS 345

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+ L+ +MKE  + PD   Y   +   C    +     +   + EE + A+   Y  L+ 
Sbjct: 346 AYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLID 405

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+ G+V+EA  L  +M+    S    T+  ++  L   G   +A+          +K 
Sbjct: 406 GYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKP 465

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
               F  L  +++    F++A+  L++M
Sbjct: 466 TVYTFNILIGRMLKQGDFDDAHKCLQKM 493



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI   CK+ K+DEA  + + M       +A TF+ ++  L     ++EA  L + M 
Sbjct: 400 YSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMV 459

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           ++ + P +  +N L+     +G+       L+KM        ARTY+A +   C AG+V+
Sbjct: 460 KMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQ 519

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           EA  ++ +M ++G      TY  ++ A  +LG
Sbjct: 520 EAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLG 551



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 68/146 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y   I  LCK  +++EA R+ D + E G   + I +  ++    +  +++EA  L
Sbjct: 360 PDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCL 419

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M     SP+   +N L+   C  GNL     +  +M +  L     T++ L+    +
Sbjct: 420 FEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLK 479

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
            G  ++A   L++M+  G+  +  TY
Sbjct: 480 QGDFDDAHKCLQKMMSSGEKPVARTY 505



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 16/218 (7%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y  L+    H + +  V  ++    + CC++  +              +SD+CR +++ D
Sbjct: 104 YASLLTLIDHHKIVSDVPKIIVSMIK-CCYSAPDAL-----------FVSDICRKMSKDD 151

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
                   Y+ L+  L +   +DE  ++   M E    +   TF+ +++V  +   ++EA
Sbjct: 152 ITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEA 211

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
              M  M +  +SPD       +  YC   ++ +   V ++M       +  +Y+ L+ G
Sbjct: 212 KQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNR----NEVSYNQLIHG 267

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            C AGR++EA  L  RM DD       TY  ++  L R
Sbjct: 268 LCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR 305



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 69/161 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI  LC    + EAL + D M + G   +  TF+ ++  + +    ++A   
Sbjct: 430 PNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKC 489

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M      P    YN  +  YC  G +     ++ +M+EE +  D  TY +L+    +
Sbjct: 490 LQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGK 549

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
            G    AF +L+ M D      + T+  ++  L    Y  +
Sbjct: 550 LGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVE 590



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  +CK++ +  AL+++D M + G   S + F+ ++S   + ++  EA  +
Sbjct: 634 PDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANI 693

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M     SP L     L+     +G     + V KK+       D   +  L+ G  +
Sbjct: 694 VEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLK 753

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            G VEE   L   M  +G +    TY+
Sbjct: 754 QGLVEEFSQLFEEMEKNGCNFSPRTYS 780



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 13/178 (7%)

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           LS   ++ +L++L R   ++E   L   M E  VS D+  +N ++  YC  G +      
Sbjct: 155 LSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQF 214

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + KM +  L  D  T  + +LG CR+  V+ AF +   M +  +     +Y  ++  L  
Sbjct: 215 MCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNE----VSYNQLIHGLCE 270

Query: 256 LGYYAQAVK-FVMV---CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            G   +AV  FV +   C   ++   T L   L  K +     ++A  +L EM +R+L
Sbjct: 271 AGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNV-----HKAMGLLDEMLERNL 323



 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           + ++ME+     D++ Y+ L+ G C+   +  A  LL +M  +G S     +  V+    
Sbjct: 623 LFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCC 682

Query: 255 RLGYYAQAVKFV--MVCGGRDIKLD 277
           +L  Y +A   V  M+C G   +L+
Sbjct: 683 KLQKYGEAANIVEDMICSGHSPQLE 707


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 109/221 (49%), Gaps = 12/221 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARD------CCFNT-ANTFNFITNTENSLSV 85
           P    Y  L++      +L+T   LL++  +       C +N+  N      N E ++ +
Sbjct: 466 PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKL 525

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           + ++   +A +D   P    Y T+I   C+L  ID+A +++  M + G   + +TF+ ++
Sbjct: 526 MKEM--EVAGID---PDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           +       +E+   L+  M E  + PD   YN L+  +C + ++  T+ + K+M  + + 
Sbjct: 581 NGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVA 640

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
            D+ TY+ L+ G C+A  ++EA+ L + M++ G     ++Y
Sbjct: 641 PDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSY 681



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 77/166 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI    +  K+ E   +   M   G     +T+  ++ V  +   M  A+ L
Sbjct: 396 PDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSL 455

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M ++ ++P++  Y  L+   C  G L   + +L +M ++ L  +   Y+++V G C+
Sbjct: 456 HNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICK 515

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           AG +E+A  L++ M   G      TY  V+ A  RLG   +A K +
Sbjct: 516 AGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLL 561



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y TLI   CK  ++  A  + + M + G   + +T+  ++  L +   ++ A  L
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANEL 490

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++  +  ++  YN ++   C  GN+     ++K+ME   +  DA TY  ++   CR
Sbjct: 491 LDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G +++A  LL+ M+D G      T+  +M     LG
Sbjct: 551 LGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLG 587



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 113/251 (45%), Gaps = 9/251 (3%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALR 124
           +NT  ++N I  +   L  + +  R L ++D     P   +Y T+I   C L ++ +AL+
Sbjct: 256 WNTT-SYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALK 314

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTR-GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           ++D M   G   +  T++ I+ +L + GK  E    L E+M + ++ PD   Y  L+  +
Sbjct: 315 LMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQ-KIIPDNVVYTTLIHGF 373

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
              G++   +    +M  +K+  D  TY  L+ G  + G+V E   L   M+  G     
Sbjct: 374 FKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDE 433

Query: 244 STYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
            TY  ++    + G    A      MV  G    + T  +G+L   L      + AN +L
Sbjct: 434 VTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVT--YGALIDGLCKHGELDTANELL 491

Query: 302 KEMNKRDLKMG 312
            EM K+ L++ 
Sbjct: 492 DEMRKKGLQLN 502



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 87/214 (40%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
            K  P    Y TLI    KL  +  A +  D M         IT+  ++    +G ++ E
Sbjct: 357 QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIE 416

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
              L   M    + PD   Y  L+  YC  G +     +  +M +  +  +  TY AL+ 
Sbjct: 417 PQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID 476

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+ G ++ A  LL  M   G  +    Y  ++  + + G   QA+K +       I  
Sbjct: 477 GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDP 536

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           D   + ++      L   ++A+ +L+EM  R L+
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQ 570



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 5/215 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           I Q++ + +    +G  PD  T   Y  +++A     D++    LL +        T  T
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAIT---YTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT 575

Query: 73  FNFITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           FN + N    L +L D  R L   L+KG  P    Y+TL+ + C    ++   ++   M 
Sbjct: 576 FNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMR 635

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G    + T++ ++    + + ++EAW L + M E    P +T+YN L+  +  K  + 
Sbjct: 636 NQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKIL 695

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               + ++M    L AD   Y+  V      G VE
Sbjct: 696 EARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 18/194 (9%)

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           + +  E G   +  +++ I+  L R  +++EA  L+  M     +PD+ +Y+ ++  YC 
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD---GQSVL 242
            G L     ++  M+ + L  +  TY++++L  C+ G+  EA  +LR M+       +V+
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVV 365

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL------GSKLIGLERFNE 296
           Y+T  H      +LG+   A K+      + I  D   + +L      G K+I      E
Sbjct: 366 YTTLIH---GFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVI------E 416

Query: 297 ANFILKEMNKRDLK 310
              +  EM  R LK
Sbjct: 417 PQNLFHEMISRGLK 430


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 144/302 (47%), Gaps = 18/302 (5%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + +++ + +       +PD  T   Y  L++  G +R ++    L  +     C  T  T
Sbjct: 11  VDKAITLFKQMVDKAIYPDVVT---YGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVT 67

Query: 73  FNFITN-------TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALR 124
           +N + +        EN+L++  D+      +  GF P    Y TLI  LC+  ++D+  +
Sbjct: 68  YNTMIDGLCKCGRIENALTLYDDMA-----IHFGFRPTVVTYSTLIDGLCRDHEVDKGCK 122

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +++ MA  G   +A+T++ +++ L    R +EA+ L+E M      P+L  +  ++   C
Sbjct: 123 LLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLC 182

Query: 185 FKGNLTATSGVLKK--MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
            +G + A   V+ +  M E  L  D  T+++++ G C+  R+ +A  + +R ++ G    
Sbjct: 183 KEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPN 242

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
             TY+ ++  L ++    +A++ +        + +T  + ++   L+ + R  +A  +L+
Sbjct: 243 VVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLR 302

Query: 303 EM 304
           +M
Sbjct: 303 QM 304



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 123/277 (44%), Gaps = 7/277 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV--LSDLC 90
           P    Y  L++       ++    LL K     C   ANT  + T  +  L V  + D  
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGC--RANTVTYSTVVDGLLKVGRMEDAV 298

Query: 91  RTLARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
             L ++ D G  P    Y+TLI    K +++ EA+ ++  M E GF  S +T+  +   L
Sbjct: 299 VVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGL 358

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGAD 207
            R  R +EA  +++ M     +P+   Y+ ++   C  G +T   G  +KM  +E +   
Sbjct: 359 CRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPH 418

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
              Y AL+ G C+AG+++EA+  L RM+  G+     T++ ++  L   G     ++   
Sbjct: 419 VIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFR 478

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
               R    D   + +L  +L    R +EA  + ++M
Sbjct: 479 GMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQM 515



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 11/193 (5%)

Query: 84  SVLSDLCRTLARLD----------KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           SVL  LC+    LD          +G  P    Y TLI  L K+ K+DEAL+++  M E 
Sbjct: 213 SVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL 272

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   + +T+  ++  L +  RME+A  ++  M++    PD   YN L+  +  +  L   
Sbjct: 273 GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREA 332

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            G+L++M E        TY  L  G CR+GR +EA  +L  M   G +    TY+ ++  
Sbjct: 333 VGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 392

Query: 253 LLRLGYYAQAVKF 265
           L + G   +A+ +
Sbjct: 393 LCKAGRVTEALGY 405



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 83/198 (41%), Gaps = 37/198 (18%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ GF P    Y TL   LC+  + DEA+ ++D MA  G   +AIT+  I+  L +  R+
Sbjct: 340 LEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRV 399

Query: 155 EEAWGLMEVM----------------------------------KEIRVS--PDLTAYNY 178
            EA G  E M                                  + IR    PD+  ++ 
Sbjct: 400 TEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSI 459

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+   C  G +     + + M E     D  TY  LV   CRA RV+EAF L ++M  DG
Sbjct: 460 LINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDG 519

Query: 239 QSVLYSTYAHVMGALLRL 256
            S   ST   ++  LL +
Sbjct: 520 LSPDRSTRRTMIHGLLEV 537



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 123/282 (43%), Gaps = 6/282 (2%)

Query: 33  PTSAYYDDLVNAA-GHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           P +  Y+ LVNA  G  R  E    LL + A + C     TF  I      E  +     
Sbjct: 134 PNAVTYNTLVNALLGQGRSKEAFS-LLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFR 192

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +   +  ++ G  P    +++++  LCK ++I +A  V     E G   + +T+  ++  
Sbjct: 193 VVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDG 252

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L++  +M+EA  L+  M E+    +   Y+ ++      G +     VL++M +     D
Sbjct: 253 LSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPD 312

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A TY+ L+ G  +  R+ EA  LLR M++ G      TY  +   L R G + +AV+ + 
Sbjct: 313 AVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILD 372

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               R    +   + S+   L    R  EA    ++M + ++
Sbjct: 373 YMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 414



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 116/253 (45%), Gaps = 8/253 (3%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           +SG  PD  T   ++ +++    E+ +     +  +     C     T++ + +  + ++
Sbjct: 201 ESGLSPDVIT---FNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMA 257

Query: 85  VLSDLCRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
            + +  + LA++ +   R +   Y T++  L K+ ++++A+ V+  M + G    A+T++
Sbjct: 258 KMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYN 317

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    + +R+ EA GL+  M E    P +  Y  L    C  G       +L  M   
Sbjct: 318 TLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAAR 377

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS-TYAHVMGALLRLGYYAQ 261
               +A TY ++V G C+AGRV EA     +M  D     +   Y+ ++  L + G   +
Sbjct: 378 GCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDE 437

Query: 262 AVKFV--MVCGGR 272
           A +F+  M+  GR
Sbjct: 438 AYEFLERMIRAGR 450



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 1/155 (0%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +I  LCK +K+D+A+ +   M +       +T+  ++  L + +R++EA+ L E  +   
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEA 227
             P +  YN ++   C  G +     +   M           TY  L+ G CR   V++ 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             LL  M   G +    TY  ++ ALL  G   +A
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEA 155



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           +AR +   P   AY  LI  LCK  KIDEA   ++ M   G     +TF  +++ L    
Sbjct: 409 MARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAG 468

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           R++    L   M E    PD+  Y  L+   C    +     + ++M  + L  D  T  
Sbjct: 469 RIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRR 528

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQS 240
            ++ G     R E+A    +R+ D+  S
Sbjct: 529 TMIHGLLEVNRDEDA----KRIQDEENS 552


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 3/196 (1%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  LCK  ++D A+ ++D M         + F  +++ L R KR++EA+ ++E      
Sbjct: 15  LLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAG 71

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             PD   YN  +   C    +     +LKKM+E+K      TY ALV G  +AGR++EA 
Sbjct: 72  CEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAM 131

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            +L +MV+ G S    TY  V+  L + G   +A +  +   G   + D  ++ +L S L
Sbjct: 132 AILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGL 191

Query: 289 IGLERFNEANFILKEM 304
             + + +EA   L +M
Sbjct: 192 AKIGKLDEALVYLNQM 207



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 106/262 (40%), Gaps = 20/262 (7%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNA---------------AGHERDLETVRYLLNKRA 62
           LV R    SG   D    AY+D+L ++                  ER  E + ++     
Sbjct: 225 LVIRQLCASGNLED--ALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSE 282

Query: 63  RDCCFNTANTFNFITNTENSLSVLSD-LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKID 120
           R C F T  T+  + +    L  L + L +    +++GF P    Y ++I  LCKL +++
Sbjct: 283 RRC-FPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVE 341

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           E       M   G+   A+T+  ++    + K + +A  +   M +         YN +L
Sbjct: 342 EGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIIL 401

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
              C  G +         MEE    A   TY AL+ G C  G V  A  L RRM+D G  
Sbjct: 402 DGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCE 461

Query: 241 VLYSTYAHVMGALLRLGYYAQA 262
               +Y  ++  L R G  A+A
Sbjct: 462 PNLVSYNIIIRGLCRAGKLAKA 483



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 117/281 (41%), Gaps = 49/281 (17%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEA 122
           FI +     S++  LC+ L R+++G             P    Y  LI    K K I +A
Sbjct: 320 FIPDAVTYTSIIDGLCK-LGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKA 378

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
            RV   M + G  +S +T++ IL  L +  R+ EA+     M+E      +  Y+ L+  
Sbjct: 379 HRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDG 438

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV----LLRR----- 233
           +C +GN++A   + ++M +     +  +Y+ ++ G CRAG++ +A+     LL+R     
Sbjct: 439 FCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPD 498

Query: 234 ---------------------------MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
                                      MV  G S    +Y+ +M  + R G     ++  
Sbjct: 499 VYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIF 558

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                R +  D  +F +L   L    R +EA  + +E+ +R
Sbjct: 559 HEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERR 599



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 97/200 (48%), Gaps = 10/200 (5%)

Query: 76  ITNTENSLSVLSDLCRTLARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVV 126
           + +T    ++L+ LC+T  +LD+           P   A+  +I  LC+ K++DEA  V+
Sbjct: 6   LVDTRVCTALLNGLCKT-GQLDRAMLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVL 64

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           +     G     +T++  +  L + +R+++A+ L++ M E +  P    Y  L+      
Sbjct: 65  ERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKA 124

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G L     +L++M E+      +TY  ++ G  +AGRVEEA  +   M+ +G       Y
Sbjct: 125 GRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVY 184

Query: 247 AHVMGALLRLGYYAQAVKFV 266
             ++  L ++G   +A+ ++
Sbjct: 185 TALISGLAKIGKLDEALVYL 204



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 22/241 (9%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           V++ LCR   RLD+ F            P    Y+  I  LCK +++D+A +++  M E 
Sbjct: 47  VINGLCRE-KRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEK 105

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
               + +T+  ++  L +  R++EA  ++E M E   SP L  Y  ++      G +   
Sbjct: 106 KCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEA 165

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG--QSVLYSTYAH-- 248
             +   M       DA  Y AL+ G  + G+++EA V L +MV++G  + V      H  
Sbjct: 166 RRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNL 225

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTE--LFGSLGSKLIGLERFNEANFILKEMNK 306
           V+  L   G    A+ +       D  LD     F  L + L   ER  EA   +K+M++
Sbjct: 226 VIRQLCASGNLEDALAYF---DELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSE 282

Query: 307 R 307
           R
Sbjct: 283 R 283



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 121/319 (37%), Gaps = 42/319 (13%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           P  P    +  ++N    E+ L+    +L +  R  C     T+N   +       + D 
Sbjct: 36  PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDA 95

Query: 90  CRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            + L ++D  K  P    Y  L+  L K  ++DEA+ +++ M E G   +  T+  ++  
Sbjct: 96  FQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDG 155

Query: 148 LTRGKRMEEA-----------------------WGLMEVMKEIR---------------- 168
           L++  R+EEA                        GL ++ K                   
Sbjct: 156 LSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARG 215

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V PD+  +N ++   C  GNL        ++++  L     T++ LV   C+A R EEA 
Sbjct: 216 VEPDVVIHNLVIRQLCASGNLEDALAYFDELDD-SLDLTHFTFNPLVAALCKAERTEEAI 274

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
             +++M +        TY  ++   L+LG   +A+  +     R    D   + S+   L
Sbjct: 275 AFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGL 334

Query: 289 IGLERFNEANFILKEMNKR 307
             L R  E      EM  R
Sbjct: 335 CKLGRVEEGCERFHEMRNR 353



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 10/228 (4%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           +IP++  V R   +SG      T     D +  AG   +       + +R    C  T  
Sbjct: 374 MIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERG---CVATVV 430

Query: 72  TFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVD 127
           T++ + +   +E ++S   +L R +  LD+G  P   +Y+ +I  LC+  K+ +A    +
Sbjct: 431 TYSALMDGFCSEGNVSAAVELFRRM--LDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFE 488

Query: 128 IMAEGGFGLSAITFHPILSVLT-RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
            + +        TF+  L  L  R   + +   L E M     SP+L +Y+ L+   C  
Sbjct: 489 KLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRA 548

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           G L  T  +  +M    +  D   ++ L+   C AGRV+EA  + R +
Sbjct: 549 GGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFREL 596



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 9/210 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG----LSAITFHPILSVLTRGKRMEE 156
           P    Y  LI  L K+ K+DEAL  ++ M E G         +  + ++  L     +E+
Sbjct: 179 PDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLED 238

Query: 157 AWGLMEVMKEIRVSPDLT--AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           A    +   E+  S DLT   +N L+ A C           +KKM E +      TY +L
Sbjct: 239 ALAYFD---ELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSL 295

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           V G  + GR++EA + L+  V+ G      TY  ++  L +LG   +  +       R  
Sbjct: 296 VDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGY 355

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
           + D   + +L    +  +   +A+ + ++M
Sbjct: 356 EPDAVTYAALIDGFMKAKMIPKAHRVYRQM 385


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 20/294 (6%)

Query: 36  AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT-FNFITN-----TENSLSVLSDL 89
            +Y++++   G+   L     L++K  +D     A + FN IT      +  S + L + 
Sbjct: 122 GFYEEILEC-GYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNG 180

Query: 90  CRTLARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
              L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   +
Sbjct: 181 YIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPN 240

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            +TF  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ 
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLID 300

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M  + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G
Sbjct: 301 EMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEG 360

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            Y  A K +       +K DT  +  + ++          + +LKEM +RD +M
Sbjct: 361 RYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEM-QRDGQM 413



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 55/135 (40%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E + E      L  +N L+
Sbjct: 84  DAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM 143

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +++ L+ G  R G ++E F L   M   G  
Sbjct: 144 HKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQ 203

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 204 PDVYTYSVLINGLCK 218



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 60/149 (40%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 88  CYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFC 147

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  +   + +  + P + ++N L+  Y   G+L     +   M    +  D  
Sbjct: 148 KDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVY 207

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G C+  ++++A  L   M+D G
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDKG 236


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 4/213 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TL+  LCK  ++ +A  +++ M E G      TF  ++    R    E+A  
Sbjct: 364 LPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQ 423

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + +   R+ PD+ AYN L+   C KG+L   + +   M   ++  +  TY  L+   C
Sbjct: 424 LFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHC 483

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             G+VEEAF  L  MV  G      TY  ++    R G   +  +F+      +I  D  
Sbjct: 484 EKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLI 543

Query: 280 LFGSLGSKLIGLER----FNEANFILKEMNKRD 308
            F +L    I  E     FN  N + KEM + D
Sbjct: 544 TFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPD 576



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 129/303 (42%), Gaps = 25/303 (8%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V     K   FPD  T   ++ L++A     D++    L++  A         TFN    
Sbjct: 179 VISEMEKRCVFPDVVT---HNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFN---- 231

Query: 79  TENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVV 126
                SVL  LC+   R DK              P   +++ LIG  C++ +++EA++  
Sbjct: 232 -----SVLKGLCKH-RRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFY 285

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M + G     ++F  ++ + +   +M+ A   +  MK + + PD   Y  ++  +C  
Sbjct: 286 KEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRA 345

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G+++    V  +M       D  TY+ L+ G C+  R+ +A  LL  M + G +    T+
Sbjct: 346 GSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTF 405

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             ++    R G + +A++       + ++ D   + SL   +       +AN +  +M+ 
Sbjct: 406 TTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHA 465

Query: 307 RDL 309
           R++
Sbjct: 466 REI 468



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y  LI   C+  +++EA   +D M   G   + +T++ I+    R   +++   
Sbjct: 469 FPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQ 528

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            ++ M +  + PDL  +N L+  Y  + N+     V   ME+E +  DA TY+ ++ G  
Sbjct: 529 FLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFS 588

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             G +EEA  + ++M   G      TY  ++   +  G   +A + 
Sbjct: 589 EQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQL 634



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 14/214 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT-------ENSLSV 85
           P    Y+ L++    + DL     L +       F    T++ + ++       E +   
Sbjct: 435 PDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGF 494

Query: 86  LSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           L ++      + KG  P    Y+++I   C+   + +  + +  M +       ITF+ +
Sbjct: 495 LDEM------VSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTL 548

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    + + M  A+ +  +M++  V PD   YN ++  +  +GN+     V KKM    +
Sbjct: 549 IHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGI 608

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             D  TY +L+ G   AG  +EAF L   M+  G
Sbjct: 609 EPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRG 642



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 16/181 (8%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + ++   CK  + D+A  V+  M +       +T + ++    R   ++ A  L++ M  
Sbjct: 161 NIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMAN 220

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + P +  +N +L   C          V + M++  +  D R+++ L+ G CR G VEE
Sbjct: 221 KGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEE 280

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMG------------ALLR----LGYYAQAVKFVMVCG 270
           A    + M   G +    +++ ++G            A LR    LG     V + MV G
Sbjct: 281 AMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIG 340

Query: 271 G 271
           G
Sbjct: 341 G 341



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 7/155 (4%)

Query: 155 EEAWGLMEVMKEIRVSPDLTAY--NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           EEA+ L+     +    ++ AY  N ++ +YC          V+ +ME+  +  D  T++
Sbjct: 142 EEAYRLV-----LSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHN 196

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
            L+    RAG V+ A  L+  M + G      T+  V+  L +   + +A +        
Sbjct: 197 VLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQC 256

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            +  D   F  L      +    EA    KEM +R
Sbjct: 257 SVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQR 291


>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Glycine max]
          Length = 587

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 79/160 (49%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           R  + +    P    Y TLI   CK  +++EAL++  +M   G     +T++ IL  L +
Sbjct: 287 RMFSEIKNATPNHVTYTTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRKLCQ 346

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R+ +A  L+  M E ++  D    N L+ AYC  G+L +      KM E  L  D  T
Sbjct: 347 DGRIRDANKLLNEMSERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFT 406

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
           Y AL+ G C+   +E A  L+  M+D G +  Y TY+ ++
Sbjct: 407 YKALIHGFCKTNELESAKELMFSMLDAGFTPSYCTYSWIV 446



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 7/232 (3%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           T++++ V   +     RL +  P   A   L+  L K        ++   M + G   + 
Sbjct: 142 TQDAIQVFEQM-----RLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNI 196

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
             ++ +    ++   +E A  L+  M    V  D+  YN LL+ YC KG       +  +
Sbjct: 197 YIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSIQNR 256

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           ME E +  D  +Y++L+ G C+ GR+ EA  +   + +   +  + TY  ++    +   
Sbjct: 257 MEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKNATPN--HVTYTTLIDGYCKTNE 314

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             +A+K   +   + +      + S+  KL    R  +AN +L EM++R L+
Sbjct: 315 LEEALKMCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNEMSERKLQ 366



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           +TLI   CK+  +  AL+  + M E G      T+  ++    +   +E A  LM  M +
Sbjct: 373 NTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNELESAKELMFSMLD 432

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
              +P    Y++++  Y  K N+ A   +  +     +  D   Y AL+  +C+  R++ 
Sbjct: 433 AGFTPSYCTYSWIVDGYNKKDNMDAVLALPDEFLSRGICLDVSVYRALIRSSCKVERIQC 492

Query: 227 AFVLLRRMVD---DGQSVLYSTYAH 248
           A  L   M      G+SV+Y++ A+
Sbjct: 493 AERLFYHMEGKGISGESVIYTSIAY 517


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 29/261 (11%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSV 85
           P +  Y+ ++ +      L+    +LN+   D C  T  T+  +          + +L +
Sbjct: 191 PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 250

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           + ++      L +G  P    Y+T+I  +CK   +D A  +V  +   G     I+++ +
Sbjct: 251 MDEM------LSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNIL 304

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L  L    + EE   LM  M   +  P++  Y+ L+T  C  G +     +LK M+E+ L
Sbjct: 305 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             DA +YD L+   CR GR++ A   L  M+ DG       Y  V+  L + G   QA+ 
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL- 423

Query: 265 FVMVCGGRDIKLDTELFGSLG 285
                         E+FG LG
Sbjct: 424 --------------EIFGKLG 430



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 1/220 (0%)

Query: 91  RTLARLDK-GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           R +  L+K G P   AY+ LI   CK+ +ID+A RV+D M    F    +T++ ++  L 
Sbjct: 145 RVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLC 204

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              +++ A  ++  +      P +  Y  L+ A   +G +     ++ +M    L  D  
Sbjct: 205 SRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMF 264

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ ++ G C+ G V+ AF ++R +   G      +Y  ++ ALL  G + +  K +   
Sbjct: 265 TYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 324

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                  +   +  L + L    +  EA  +LK M ++ L
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 2/170 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRME 155
           D   P    Y+T++  LCK  K D+AL +   + E G   ++ +++ + S L + G ++ 
Sbjct: 397 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 456

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
               ++E+M    + PD   YN +++  C +G +     +L  M   +      TY+ ++
Sbjct: 457 ALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           LG C+A R+E+A  +L  MV +G     +TY  ++  +   GY A+A++ 
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 98/204 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ L+  L    K +E  +++  M       + +T+  +++ L R  ++EEA  L
Sbjct: 296 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 355

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++MKE  ++PD  +Y+ L+ A+C +G L      L+ M  +    D   Y+ ++   C+
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCK 415

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+ ++A  +  ++ + G S   S+Y  +  AL   G   +A+  ++      I  D   
Sbjct: 416 NGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEIT 475

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + S+ S L      +EA  +L +M
Sbjct: 476 YNSMISCLCREGMVDEAFELLVDM 499



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 22/215 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  YD L+ A   E  L+     L     D C      +N         +VL+ LC+ 
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN---------TVLATLCKN 416

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             + D+              P  S+Y+T+   L        AL ++  M   G     IT
Sbjct: 417 -GKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEIT 475

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++S L R   ++EA+ L+  M+     P +  YN +L  +C    +     VL+ M 
Sbjct: 476 YNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMV 535

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
                 +  TY  L+ G   AG   EA  L   +V
Sbjct: 536 GNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 112/265 (42%), Gaps = 35/265 (13%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           +V + + K      E     Y+ L++A     D+E    LL++    C F    T+N + 
Sbjct: 183 MVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLI 242

Query: 78  N-------TENSLSVLSDLCR--------TLARLDKGF--------------------PR 102
           +          +LSV   + R        T   L  GF                    P 
Sbjct: 243 SLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDATPN 302

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
              Y TLI   C+L  +D+ALR+ + M   G   + +T++ IL  L    R+ +A  L+ 
Sbjct: 303 HVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLN 362

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M E ++ PD    N L+ AYC  G++ +   V  +M E  L  D  TY AL+ G C+  
Sbjct: 363 EMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIR 422

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYA 247
            ++ A  LL  M+D G S  Y TY+
Sbjct: 423 EMDGAKELLLSMLDAGFSPSYCTYS 447



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 3/213 (1%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P   A   L+  L K +  D   +V   MA  G   +   ++ ++    +   +E+A
Sbjct: 160 GFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKA 219

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M+   V PDL  YN L++ YC KG       V  +ME E +  D  TY++L+ G
Sbjct: 220 DNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHG 279

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+ GR+ EA  L + + D   +  + TY  ++    RL    QA++       + +   
Sbjct: 280 FCKEGRMREAMRLFKEIRDATPN--HVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPT 337

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              + S+  KL  + R  +AN +L EM+++ ++
Sbjct: 338 VVTYNSILRKLCEIGRIRDANKLLNEMSEKKIE 370



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 8/208 (3%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK     EAL V D M   G     +T++ ++    +  RM EA  
Sbjct: 232 FPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREA-- 289

Query: 160 LMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            M + KEIR  +P+   Y  L+  YC   +L     + ++ME + L     TY++++   
Sbjct: 290 -MRLFKEIRDATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKL 348

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA--VKFVMVCGGRDIKL 276
           C  GR+ +A  LL  M +        T   ++ A  ++G    A  VK  MV  G  +KL
Sbjct: 349 CEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAG--LKL 406

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           D   + +L      +   + A  +L  M
Sbjct: 407 DQFTYKALIHGFCKIREMDGAKELLLSM 434



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 8/230 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L++      DL+    L  +      + T  T+N I      +  + D  + 
Sbjct: 301 PNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKL 360

Query: 93  LARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  +   K  P     +TLI   CK+  +  AL+V + M E G  L   T+  ++    +
Sbjct: 361 LNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCK 420

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            + M+ A  L+  M +   SP    Y++L+  YC + N  A   +  +   + L  D   
Sbjct: 421 IREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSL 480

Query: 211 YDALVLGACRAGRVEEA---FVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           Y AL+   C+  +V+ A   F L++     G SV+Y++ A+   A  +LG
Sbjct: 481 YRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAY---AYWKLG 527



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 13/223 (5%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI   CK   +++A  ++  M          T++ ++S+  +     EA  + + M+
Sbjct: 203 YNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRME 262

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+  YN L+  +C +G +     + K++ +     +  TY  L+ G CR   ++
Sbjct: 263 REGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDA--TPNHVTYTTLIDGYCRLNDLD 320

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL----- 280
           +A  L   M   G      TY  ++  L  +G    A K +     + I+ D        
Sbjct: 321 QALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLI 380

Query: 281 -----FGSLGSKLIGLERFNEANFILKEMNKRDLKMGF-KLRD 317
                 G + S L    R  EA   L +   + L  GF K+R+
Sbjct: 381 NAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIRE 423


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  +++   + +R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G Y 
Sbjct: 304 MKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYL 363

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++          + +LKEM +
Sbjct: 364 DAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQR 409



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 20/217 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           ++A+G + D+ T   L+N   ++   + AN           + N     ++++  C+   
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKN-R 255

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+ 
Sbjct: 256 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       VL++M   
Sbjct: 316 TLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
            L  D  TY  ++   C+ G V     LL+ M  DG 
Sbjct: 376 GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH 412



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 79/217 (36%), Gaps = 20/217 (9%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E + +      L  +N L+
Sbjct: 84  DAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILDCGYPASLYFFNILM 143

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C +G++     V   + +  L     +++ L+ G  R G ++E F L   M   G  
Sbjct: 144 HRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQ 203

Query: 241 VLYSTYAHVMGAL----------------LRLGYYAQAVKFVMV----CGGRDIKLDTEL 280
               TY+ ++  L                L  G     V F  +    C  R + L  E+
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEI 263

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRD 317
           +  + S+ +  +       I     K DLK    L D
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLID 300


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 125/314 (39%), Gaps = 37/314 (11%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L+N       +     LL + +       A T N +         + D   T
Sbjct: 346 PDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNT 405

Query: 93  LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           + ++++ GF P    Y+TLI   CK   + EA R +D M      + ++T + IL  L R
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCR 465

Query: 151 GKRMEEAWGLM-----------------------------------EVMKEIRVSPDLTA 175
            K++EEA+ L+                                   + MKE  + P    
Sbjct: 466 EKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVT 525

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           YN ++   C  G        L ++ E  L  D  TY+ ++ G CR G VE+AF    +MV
Sbjct: 526 YNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMV 585

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
           ++       T   ++  L   G   +A+K       +   +DT  + +L + L    R +
Sbjct: 586 ENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLD 645

Query: 296 EANFILKEMNKRDL 309
           +A  +L EM +++L
Sbjct: 646 DAFNLLSEMEEKEL 659



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 2/260 (0%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G +   P +  Y+ +++A   +  L   R LL            NT+N +      +  L
Sbjct: 235 GKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWL 294

Query: 87  SDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +    +  + +    P    Y+ LI  LC   +I+EA ++ D M         ++++ +
Sbjct: 295 KEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTL 354

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++      ++ EA+ L+E M E  V P+   +N ++  YC +G +   S  + KMEE   
Sbjct: 355 INGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF 414

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY+ L+ G C+AG + EAF  +  M      +   T   ++  L R     +A K
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK 474

Query: 265 FVMVCGGRDIKLDTELFGSL 284
            +     R   +D   +G+L
Sbjct: 475 LLSSARKRGYFIDEVSYGTL 494



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 107/208 (51%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P ++ Y+ L+   CK+  + EA  V+++M +        T++ +++ L    R+EEA+ 
Sbjct: 275 LPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFK 334

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + M+ +++ PD+ +YN L+        ++    +L++M E+ +  +A T++ +V   C
Sbjct: 335 LRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYC 394

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G++++A   + +M + G S    TY  ++    + G   +A + +   G +++K+D+ 
Sbjct: 395 KEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSV 454

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
              ++   L   ++  EA  +L    KR
Sbjct: 455 TLNTILRTLCREKKLEEAYKLLSSARKR 482



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 11/232 (4%)

Query: 84  SVLSDLCR-----------TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           ++L  LCR           + AR    F  + +Y TLI    K   +D AL++ D M E 
Sbjct: 458 TILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEK 517

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
               S +T++ I+  L +  + E+A   +  + E  + PD T YN +L  YC +G++   
Sbjct: 518 EIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKA 577

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
                KM E     D  T + L+ G C  G +E+A  L    V  G+++   TY  ++ +
Sbjct: 578 FQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITS 637

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           L + G    A   +     +++  D   + ++ + L    R  EA   + +M
Sbjct: 638 LCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKM 689



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + ++ +I   C   K  +A+  +++M +       +T++ IL  L +  R+ +A  L
Sbjct: 206 PNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDL 265

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK   + P+   YN L+  YC  G L   + V++ M +  L  D  TY+ L+ G C 
Sbjct: 266 LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCN 325

Query: 221 AGRVEEAFVLLRRM 234
            GR+EEAF L   M
Sbjct: 326 EGRIEEAFKLRDEM 339



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 79  TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           TE ++S L++L      L+ G  P ++ Y+T++   C+   +++A +  + M E  F   
Sbjct: 539 TEQAISKLNEL------LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPD 592

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
             T + +L  L     +E+A  L         + D   YN L+T+ C +G L     +L 
Sbjct: 593 VFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLS 652

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +MEE++LG D  TY+A++     +GR+ EA   + +M++ G
Sbjct: 653 EMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF+ ++       + ++A   + VM +   SPD   YN +L A C KG L     +L  M
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDM 269

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           +   L  +  TY+ LV G C+ G ++EA  ++  M  +       TY  ++  L   G  
Sbjct: 270 KSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRI 329

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +A K         +  D   + +L +  +   + +EA  +L+EM+++ +K
Sbjct: 330 EEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVK 380



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 91/236 (38%), Gaps = 20/236 (8%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           DL  ++ RL    P K+  DT IG   +  +   A ++   M       + +T + +L+ 
Sbjct: 122 DLHLSILRLTS--PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNS 179

Query: 148 LTRGKRMEEAWGLMEVMKE---IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L R           E   +   + + P++  +N ++  YC +         L  M +   
Sbjct: 180 LVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNC 239

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY+ ++   C+ GR+ +A  LL  M   G     +TY  ++    ++G+  +A  
Sbjct: 240 SPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAAN 299

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYE 320
            + +    ++  D   +  L + L    R  EA               FKLRD  E
Sbjct: 300 VIELMTQNNLLPDVWTYNMLINGLCNEGRIEEA---------------FKLRDEME 340


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 29/261 (11%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSV 85
           P +  Y+ ++ +      L+    +LN+   D C  T  T+  +          + +L +
Sbjct: 191 PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 250

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           + ++      L +G  P    Y+T+I  +CK   +D A  +V  +   G     I+++ +
Sbjct: 251 MDEM------LSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNIL 304

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L  L    + EE   LM  M   +  P++  Y+ L+T  C  G +     +LK M+E+ L
Sbjct: 305 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             DA +YD L+   CR GR++ A   L  M+ DG       Y  V+  L + G   QA+ 
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL- 423

Query: 265 FVMVCGGRDIKLDTELFGSLG 285
                         E+FG LG
Sbjct: 424 --------------EIFGKLG 430



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 1/220 (0%)

Query: 91  RTLARLDK-GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           R +  L+K G P   AY+ LI   CK+ +ID+A RV+D M    F    +T++ ++  L 
Sbjct: 145 RVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLC 204

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              +++ A  ++  +      P +  Y  L+ A   +G +     ++ +M    L  D  
Sbjct: 205 SRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMF 264

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ ++ G C+ G V+ AF ++R +   G      +Y  ++ ALL  G + +  K +   
Sbjct: 265 TYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKM 324

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                  +   +  L + L    +  EA  +LK M ++ L
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 2/170 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRME 155
           D   P    Y+T++  LCK  K D+AL +   + E G   ++ +++ + S L + G ++ 
Sbjct: 397 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 456

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
               ++E+M    + PD   YN +++  C +G +     +L  M   +      TY+ ++
Sbjct: 457 ALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           LG C+A R+E+A  +L  MV +G     +TY  ++  +   GY A+A++ 
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 98/204 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ L+  L    K +E  +++  M       + +T+  +++ L R  ++EEA  L
Sbjct: 296 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 355

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++MKE  ++PD  +Y+ L+ A+C +G L      L+ M  +    D   Y+ ++   C+
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCK 415

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+ ++A  +  ++ + G S   S+Y  +  AL   G   +A+  ++      I  D   
Sbjct: 416 NGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEIT 475

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + S+ S L      +EA  +L +M
Sbjct: 476 YNSMISCLCREGMVDEAFELLVDM 499



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 22/215 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  YD L+ A   E  L+     L     D C      +N         +VL+ LC+ 
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN---------TVLATLCKN 416

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             + D+              P  S+Y+T+   L        AL ++  M   G     IT
Sbjct: 417 -GKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEIT 475

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++S L R   ++EA+ L+  M+     P +  YN +L  +C    +     VL+ M 
Sbjct: 476 YNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMV 535

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
                 +  TY  L+ G   AG   EA  L   +V
Sbjct: 536 GNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 103/223 (46%), Gaps = 16/223 (7%)

Query: 77  TNTENSLS---VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDE 121
           T   NS+S   ++  LC  + RL++ F            P    Y  LI  LC    ID+
Sbjct: 261 TCAPNSVSYSILIHGLCE-VGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDK 319

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A  + D M   G   +  T+  ++  L R  ++EEA G+   M +  + P +  YN L+ 
Sbjct: 320 AFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALIN 379

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            YC  G +     +L  ME+     + RT++ L+ G CR G+  +A  LL+RM+D+G S 
Sbjct: 380 GYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSP 439

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
              +Y  ++  L R G+   A K +      D++ D   F ++
Sbjct: 440 DIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAI 482



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  LI  LC++ +++EA  + D M E G   S  T+  ++  L     +++A+ L
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P++  Y  L+   C  G +   +GV +KM ++ +     TY+AL+ G C+
Sbjct: 324 FDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCK 383

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV  AF LL  M          T+  +M  L R+G   +AV  +       +  D   
Sbjct: 384 DGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVS 443

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L      N A  +L  MN  DL+
Sbjct: 444 YNVLIDGLCREGHMNVAYKLLTSMNSFDLE 473



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 1/198 (0%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           +L+   C+   + +AL+V D+M+ EG    +++++  ++  L    R+EEA+GL + M E
Sbjct: 235 SLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGE 294

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
               P    Y  L+ A C +G +     +  +M       +  TY  L+ G CR G++EE
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEE 354

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  + R+MV DG      TY  ++    + G    A + + V   R  K +   F  L  
Sbjct: 355 ANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELME 414

Query: 287 KLIGLERFNEANFILKEM 304
            L  + +  +A  +LK M
Sbjct: 415 GLCRVGKPYKAVHLLKRM 432



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 97/213 (45%), Gaps = 4/213 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           +P++  Y  L+ A      ++    L ++     C    +T+  + +    +  +   + 
Sbjct: 298 QPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANG 357

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           +CR + + D  FP    Y+ LI   CK  ++  A  ++ +M +     +  TF+ ++  L
Sbjct: 358 VCRKMVK-DGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            R  +  +A  L++ M +  +SPD+ +YN L+   C +G++     +L  M    L  D 
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDC 476

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            T+ A++   C+ G+ + A   L  M+  G S+
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLMLRKGISL 509



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 2/206 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  L++    +  +E    +  K  +D  F +  T+N + N       +     
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFE 392

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  ++K    P    ++ L+  LC++ K  +A+ ++  M + G     ++++ ++  L 
Sbjct: 393 LLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLC 452

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R   M  A+ L+  M    + PD   +  ++ A+C +G     S  L  M  + +  D  
Sbjct: 453 REGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEV 512

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMV 235
           T   L+ G C  G+  +A  +L  +V
Sbjct: 513 TGTTLIDGVCNVGKTRDALFILETLV 538



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 89/177 (50%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           TLI  +C + K  +AL +++ + +     +  + + IL +L++G +++E   ++  + ++
Sbjct: 516 TLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKL 575

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            + P +  Y  L+      G+++ +  +L+ M+      +   Y  ++ G C+ GRVEEA
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
             LL  M D G S  + TY  ++   +  G   +A++ V     R  +L+  ++ SL
Sbjct: 636 EKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSL 692



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 5/195 (2%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           + G   DE T     D V   G  RD     ++L    +     T ++ N I +  +   
Sbjct: 504 RKGISLDEVTGTTLIDGVCNVGKTRD---ALFILETLVKMRMLTTPHSLNVILDMLSKGC 560

Query: 85  VLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
            L +    L +++K G  P    Y TL+  L +   I  + R++++M   G   +   + 
Sbjct: 561 KLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYT 620

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            I++ L +  R+EEA  L+  M++  VSP+   Y  ++  Y   G L      ++ M E 
Sbjct: 621 IIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVER 680

Query: 203 KLGADARTYDALVLG 217
               + R Y +L+ G
Sbjct: 681 GYELNDRIYSSLLRG 695



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           ++ + CKLK   E L ++  + + G   S +T+  ++  L R   +  ++ ++E+MK   
Sbjct: 555 MLSKGCKLK---EELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSG 611

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             P++  Y  ++   C  G +     +L  M++  +  +  TY  +V G    G+++ A 
Sbjct: 612 CLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRAL 671

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLR 255
             +R MV+ G    Y     +  +LLR
Sbjct: 672 ETVRAMVERG----YELNDRIYSSLLR 694



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 66/166 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  +I   CK  K D A   + +M   G  L  +T   ++  +    +  +A  +
Sbjct: 474 PDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFI 533

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E + ++R+     + N +L        L     +L K+ +  L     TY  LV G  R
Sbjct: 534 LETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIR 593

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +G +  +F +L  M   G       Y  ++  L + G   +A K +
Sbjct: 594 SGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLL 639


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 125/314 (39%), Gaps = 37/314 (11%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L+N       +     LL + +       A T N +         + D   T
Sbjct: 346 PDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNT 405

Query: 93  LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           + ++++ GF P    Y+TLI   CK   + EA R +D M      + ++T + IL  L R
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCR 465

Query: 151 GKRMEEAWGLM-----------------------------------EVMKEIRVSPDLTA 175
            K++EEA+ L+                                   + MKE  + P    
Sbjct: 466 EKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVT 525

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           YN ++   C  G        L ++ E  L  D  TY+ ++ G CR G VE+AF    +MV
Sbjct: 526 YNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMV 585

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
           ++       T   ++  L   G   +A+K       +   +DT  + +L + L    R +
Sbjct: 586 ENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLD 645

Query: 296 EANFILKEMNKRDL 309
           +A  +L EM +++L
Sbjct: 646 DAFNLLSEMEEKEL 659



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 110/260 (42%), Gaps = 2/260 (0%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G +   P +  Y+ +++    +  L   R LL            NT+N +      +  L
Sbjct: 235 GKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWL 294

Query: 87  SDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +    +  + +    P    Y+ LI  LC   +I+EA ++ D M         ++++ +
Sbjct: 295 KEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTL 354

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++      ++ EA+ L+E M E  V P+   +N ++  YC +G +   S  + KMEE   
Sbjct: 355 INGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF 414

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY+ L+ G C+AG + EAF  +  M      +   T   ++  L R     +A K
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK 474

Query: 265 FVMVCGGRDIKLDTELFGSL 284
            +     R   +D   +G+L
Sbjct: 475 LLSSARKRGYFIDEVSYGTL 494



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 107/208 (51%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P ++ Y+ L+   CK+  + EA  V+++M +        T++ +++ L    R+EEA+ 
Sbjct: 275 LPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFK 334

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + M+ +++ PD+ +YN L+        ++    +L++M E+ +  +A T++ +V   C
Sbjct: 335 LRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYC 394

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G++++A   + +M + G S    TY  ++    + G   +A + +   G +++K+D+ 
Sbjct: 395 KEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSV 454

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
              ++   L   ++  EA  +L    KR
Sbjct: 455 TLNTILRTLCREKKLEEAYKLLSSARKR 482



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 11/232 (4%)

Query: 84  SVLSDLCR-----------TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           ++L  LCR           + AR    F  + +Y TLI    K   +D AL++ D M E 
Sbjct: 458 TILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEK 517

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
               S +T++ I+  L +  + E+A   +  + E  + PD T YN +L  YC +G++   
Sbjct: 518 EIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKA 577

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
                KM E     D  T + L+ G C  G +E+A  L    V  G+++   TY  ++ +
Sbjct: 578 FQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITS 637

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           L + G    A   +     +++  D   + ++ + L    R  EA   + +M
Sbjct: 638 LCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKM 689



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + ++ +I   C   K  +A+  +++M +       +T++ IL  L +  R+ +A  L
Sbjct: 206 PNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDL 265

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK   + P+   YN L+  YC  G L   + V++ M +  L  D  TY+ L+ G C 
Sbjct: 266 LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCN 325

Query: 221 AGRVEEAFVLLRRM 234
            GR+EEAF L   M
Sbjct: 326 EGRIEEAFKLRDEM 339



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF+ ++       + ++A   + VM +   SPD   YN +L   C KG L     +L  M
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDM 269

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           +   L  +  TY+ LV G C+ G ++EA  ++  M  +       TY  ++  L   G  
Sbjct: 270 KSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRI 329

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +A K         +  D   + +L +  +   + +EA  +L+EM+++ +K
Sbjct: 330 EEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVK 380



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 19/244 (7%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           Q++       +SG  PDE T   Y+ +++    E D+E      NK   +       T N
Sbjct: 541 QAISKLNELLESGLLPDETT---YNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCN 597

Query: 75  FITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
            +      E  L     L  T     K     + Y+TLI  LCK  ++D+A  ++  M E
Sbjct: 598 ILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVT-YNTLITSLCKEGRLDDAFNLLSEMEE 656

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
              G    T++ I++ LT   R+ EA   M  M E    PD                L  
Sbjct: 657 KELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVL------------QLDK 704

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              V+     E+  + +  Y   +   C  G+ ++A  +       G +V  STY ++M 
Sbjct: 705 NETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMD 764

Query: 252 ALLR 255
            L++
Sbjct: 765 GLIK 768



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 91/236 (38%), Gaps = 20/236 (8%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           DL  ++ RL    P K+  DT IG   +  +   A ++   M       + +T + +L+ 
Sbjct: 122 DLHLSILRLTS--PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNS 179

Query: 148 LTRGKRMEEAWGLMEVMKE---IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L R           E   +   + + P++  +N ++  YC +         L  M +   
Sbjct: 180 LVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNC 239

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY+ ++   C+ GR+ +A  LL  M   G     +TY  ++    ++G+  +A  
Sbjct: 240 SPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAAN 299

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYE 320
            + +    ++  D   +  L + L    R  EA               FKLRD  E
Sbjct: 300 VIELMTQNNLLPDVWTYNMLINGLCNEGRIEEA---------------FKLRDEME 340


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 10/204 (4%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y T++   C+  +  +AL +++ M       +A  ++ IL+ L +  + +EA  L+  M 
Sbjct: 7   YSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMA 66

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG--- 222
               +PD+  YN L+ A C  G L    G+++ M+      D  TY+ L+ G CR G   
Sbjct: 67  TTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGR 126

Query: 223 -RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELF 281
            RVE AF L   MVD G +    TY  V+ ALLR+    QA K + +        D   +
Sbjct: 127 FRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTY 186

Query: 282 GSLGSKLIGLERFNEANFILKEMN 305
             L      + RF +A  + K M+
Sbjct: 187 NML------INRFAKAGMMDKAMD 204



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 7/233 (3%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KG 99
           L +   H ++ E +  LL+  A   C     T+N + N    +  L D    +  +  + 
Sbjct: 46  LTHLCKHGKEKEALD-LLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARD 104

Query: 100 FPRK-SAYDTLIGRLCKLK----KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
            P     Y+TLI  LC+      +++ A R+ + M + G   +++T+  ++  L R K  
Sbjct: 105 CPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMD 164

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A  ++++M E   + DL  YN L+  +   G +     +  +M       D  TY+++
Sbjct: 165 EQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSV 224

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           V G C+AG+VEEA  L   M   G      TY  +  A L+ G    A  +++
Sbjct: 225 VDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLV 277



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 24/250 (9%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITN- 78
            S   +   PD  T   Y+ L+NA      LE  + L+   +ARDC  +   T+N + + 
Sbjct: 63  HSMATTSCAPDIYT---YNILINALCKVGRLEDAQGLVEMMQARDCPTDIV-TYNTLIHG 118

Query: 79  ----------TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVD 127
                      E +  +  ++      +DKG  P    Y  +I  L ++K  ++A +V+D
Sbjct: 119 LCRKGNGRFRVERAFRLFEEM------VDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLD 172

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           +M E G     +T++ +++   +   M++A  L   M      PD+  YN ++  +C  G
Sbjct: 173 LMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAG 232

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            +   + +  +M+   +  + RTY ++     +AGR+++A   L  M  +G  V   +Y 
Sbjct: 233 KVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGL-VDAISYV 291

Query: 248 HVMGALLRLG 257
            ++  + +LG
Sbjct: 292 ALISTICKLG 301


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 17/241 (7%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNK 60
           S++R +  +  + ++  +  S +  G  PD  T +     L+N    E   E +  ++  
Sbjct: 236 SIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMV-- 293

Query: 61  RARDCCFNTANTFNFITNT------ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRL 113
            AR C  N       I++       E  + +L D+ +      KG  P    YD LI  L
Sbjct: 294 -ARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKK------KGLKPDGYCYDPLIAAL 346

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           CK  ++D A+ V+D+M   G     + ++ IL+ L + KR +EA  + E + E+  SP+ 
Sbjct: 347 CKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNA 406

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
           ++YN + +A    G+     G++ +M ++ +  D  TY++L+   CR G V+EA  LL  
Sbjct: 407 SSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVD 466

Query: 234 M 234
           M
Sbjct: 467 M 467



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           + G P   AY+ +I   C+  +ID A +V+D M   GF    +T++ ++  L     ++ 
Sbjct: 120 NHGHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDS 179

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A      + +    P +  Y  L+ A   +G +     +L +M E  L  D  TY++++ 
Sbjct: 180 ALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIR 239

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G CR G V+ AF ++  +   G +    TY  ++  LL  G +    + +     R  + 
Sbjct: 240 GMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEA 299

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +   +  L S +    +  E   +LK+M K+ LK
Sbjct: 300 NVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLK 333



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 75/155 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I  +C+   +D A +++  ++  G+    IT++ +L  L    + E  + L
Sbjct: 229 PDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYEL 288

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M       ++  Y+ L+++ C  G +    G+LK M+++ L  D   YD L+   C+
Sbjct: 289 MSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCK 348

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            GRV+ A  +L  M+ DG       Y  ++  L +
Sbjct: 349 EGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCK 383



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y+T++  LCK K+ DEAL + + + E G   +A +++ + S L        
Sbjct: 365 DGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVR 424

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE--KLGADARTYDAL 214
           A G++  M +  V PD   YN L++  C  G +     +L  ME E  +      +Y+ +
Sbjct: 425 ALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIV 484

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
           +LG C+  RV +A  +L  MVD G     +TY  ++
Sbjct: 485 LLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLI 520



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 1/209 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KGF P    Y+ LIG LC    +D AL   + + +     + +T+  ++        ++
Sbjct: 154 NKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGID 213

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L++ M EI + PD+  YN ++   C +G +     ++  +  +    D  TY+ L+
Sbjct: 214 EAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILL 273

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G    G+ E  + L+  MV  G      TY+ ++ ++ R G   + V  +     + +K
Sbjct: 274 RGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLK 333

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEM 304
            D   +  L + L    R + A  +L  M
Sbjct: 334 PDGYCYDPLIAALCKEGRVDLAIEVLDVM 362



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KG+ P    Y+ L+  L    K +    ++  M   G   + +T+  ++S + R  ++EE
Sbjct: 260 KGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEE 319

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
             GL++ MK+  + PD   Y+ L+ A C +G +     VL  M  +    D   Y+ ++ 
Sbjct: 320 GVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILA 379

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
             C+  R +EA  +  ++ + G S   S+Y  +  AL   G+  +A+  ++    + +  
Sbjct: 380 CLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDP 439

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           D   + SL S L      +EA  +L +M
Sbjct: 440 DGITYNSLISCLCRDGMVDEAIELLVDM 467



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 2/173 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI        IDEA++++D M E        T++ I+  + R   ++ A+ +
Sbjct: 194 PTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQI 253

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +     +PD+  YN LL     +G   A   ++  M      A+  TY  L+   CR
Sbjct: 254 ISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCR 313

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGG 271
            G+VEE   LL+ M   G       Y  ++ AL + G    A++   VM+  G
Sbjct: 314 DGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDG 366



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 29/239 (12%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + + V + +   K G  PD      YD L+ A   E  ++    +L+    D C      
Sbjct: 317 VEEGVGLLKDMKKKGLKPD---GYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVN 373

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKID 120
           +N         ++L+ LC+   R D+              P  S+Y+++   L       
Sbjct: 374 YN---------TILACLCKQ-KRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKV 423

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL---MEVMKEIRVSPDLTAYN 177
            AL ++  M + G     IT++ ++S L R   ++EA  L   ME M+     P + +YN
Sbjct: 424 RALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDME-MESSECKPSVVSYN 482

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
            +L   C    ++    VL  M ++    +  TY  L+ G    G + +A  L   +V+
Sbjct: 483 IVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVN 541


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 119/279 (42%), Gaps = 2/279 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   Y+ +++    E DLE  R L  +           T+N + +    +  L ++   
Sbjct: 228 PSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 287

Query: 93  LARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              + D G  P    Y+ LI   CK +K+  A      M   G   + +T+  ++    +
Sbjct: 288 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 347

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              M+ A  L+  M+   + P+   Y  L+ A C  GNLT    +L  M +  +  +  T
Sbjct: 348 EGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVT 407

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y AL+ G C+AGR+ EA  + R M+ DG S     Y  ++   ++      A+K +    
Sbjct: 408 YTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMT 467

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             +IK D  L+GS+        +  E   IL+EM  R +
Sbjct: 468 ECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGI 506



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 5/186 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + ++ +L D+ RT        P +  Y +LI   CK   + EA ++++ M + G  L+ +
Sbjct: 352 QGAIKLLXDMRRT-----GLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIV 406

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +L  L +  RM EA  +   M +  +SP+   Y  L+  Y     +     +LK+M
Sbjct: 407 TYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQM 466

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            E  +  D   Y +++ G C   ++EE  ++L  M   G S        ++ A  + G  
Sbjct: 467 TECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKS 526

Query: 260 AQAVKF 265
           + A+ F
Sbjct: 527 SDALNF 532



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 93/206 (45%), Gaps = 2/206 (0%)

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKID 120
           R+ C + +  F+ + +    L +L +     +R+   +  P+  + + L+ RL K     
Sbjct: 153 RNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQ 212

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
              +  + M   G   S  T++ ++  L +   +E +  L   M+E+ +SPD+  YN L+
Sbjct: 213 LVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLI 272

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             Y   G+L   + +  +M++     D  TY+ L+   C+  ++  AF     M ++G  
Sbjct: 273 DGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLK 332

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFV 266
               TY+ ++ A  + G    A+K +
Sbjct: 333 PNVVTYSTLIDAFCKEGMMQGAIKLL 358



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 5/188 (2%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           N   +  +L+D+ +   +L+        Y  L+  LCK  ++ EA  V   M + G   +
Sbjct: 385 NLTEAWKLLNDMLQAGVKLNI-----VTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 439

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
              +  ++    + +RME+A  +++ M E  + PDL  Y  ++  +C +  L  T  +L+
Sbjct: 440 QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILE 499

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M+   + A+      ++    +AG+  +A    + M D G      TY  ++  L   G
Sbjct: 500 EMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAG 559

Query: 258 YYAQAVKF 265
               AV +
Sbjct: 560 IVELAVDY 567



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 115/293 (39%), Gaps = 33/293 (11%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           ++G  P+E T   Y  L++A     +L     LLN              N +T T    +
Sbjct: 363 RTGLLPNEFT---YTSLIDANCKAGNLTEAWKLLNDM-----LQAGVKLNIVTYT----A 410

Query: 85  VLSDLCRT----------LARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           +L  LC+            + L  G  P +  Y  L+    K +++++A++++  M E  
Sbjct: 411 LLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECN 470

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
                I +  I+      +++EE   ++E MK   +S +      ++ AY   G  +   
Sbjct: 471 IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDAL 530

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
              ++M++  + A   TY  L+ G C AG VE A     RM+  G     + Y  ++  L
Sbjct: 531 NFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGL 590

Query: 254 LRLGYYAQAVKFV--MVCGGR--DIKLDTELF------GSLGSKLIGLERFNE 296
                   A K    M C G   DI   T L       G+L   L+ + R  E
Sbjct: 591 CXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTE 643



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 65/158 (41%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           T+I    K  K  +AL     M + G   + +T+  ++  L     +E A      M  +
Sbjct: 515 TIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSL 574

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            + P++  Y  L+   C    + +   +  +M+   +  D   + AL+ G  + G ++EA
Sbjct: 575 GLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEA 634

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            VL+ RM +         Y  ++    + G   QA KF
Sbjct: 635 LVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKF 672



 Score = 44.3 bits (103), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  LC+   ++ A+     M   G   +   +  ++  L     +E A  L + M+
Sbjct: 548 YCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQ 607

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++PD+TA+  L+      GNL     ++ +M E  +  D   Y +LV G  + G + 
Sbjct: 608 CRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELH 667

Query: 226 EAFVLLRRMVDDG 238
           +A      M++ G
Sbjct: 668 QARKFFNEMIEKG 680


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 101/205 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+ LI  LCK   + +A  + ++M E G     +TF+ ++S       + EA  L +  
Sbjct: 290 TYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTF 349

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E  ++PD+ +YN L+  YC    +     +  KM  +KL  +  TY +L+ G C++GR+
Sbjct: 350 AECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRI 409

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
             A+ L   + D G S    TY  ++ AL ++    +A++   +   R +  +   +  L
Sbjct: 410 SYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNIL 469

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            +     +R +EA  + +EM++R+L
Sbjct: 470 INGYCKSKRIDEAMNLFEEMHRRNL 494



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 81/158 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LCK  +I  A  +   + +GG   + IT++ +L  L + + +++A  L
Sbjct: 391 PNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIEL 450

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M E  ++P++++YN L+  YC    +     + ++M    L  D+ TY+ L+ G C+
Sbjct: 451 FNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCK 510

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           +GR+  A+ L   M D G  V   TY  +  A  ++ +
Sbjct: 511 SGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQH 548



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 73/162 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C L +  E  R++  M +    L+  T++ ++  L +   + +A  +
Sbjct: 251 PDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDM 310

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M E    PDL  +N L++ YC   ++     +     E  +  D  +Y+ L++G C+
Sbjct: 311 RNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCK 370

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             R++EA  L  +M     +    TY+ ++  L + G  + A
Sbjct: 371 NNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYA 412



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           T++  LC   ++ +AL   D +   GF L  +T+  +++ L +     EA+ L+  M+  
Sbjct: 153 TIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQ 212

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            V P++  YN ++   C  G +T    +   +    +  D  TY  L+ G C  G+  E 
Sbjct: 213 VVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREV 272

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             LL  MVD   ++   TY  ++ AL + G   +A
Sbjct: 273 TRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKA 307



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 81/205 (39%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TLI  LCK+    EA  ++  M       + + ++ I+  L +   + EA  L   +
Sbjct: 185 TYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDV 244

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               + PD+  Y  L+  +C  G     + +L  M +  +  +  TY+ L+   C+ G +
Sbjct: 245 VGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGML 304

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A  +   M++ GQ     T+  +M          +A K         I  D   +  L
Sbjct: 305 GKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNIL 364

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
                   R +EA  +  +MN + L
Sbjct: 365 IIGYCKNNRIDEALSLFNKMNYKKL 389



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 73/184 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P       LI   C L  +  A  V+ ++ + G+ L+AIT   I+  L     + +A   
Sbjct: 111 PSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEF 170

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +       D   Y  L+   C  G       +L KME + +  +   Y+ +V G C+
Sbjct: 171 HDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCK 230

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G V EA  L   +V  G      TY  ++     LG + +  + +     R++ L+   
Sbjct: 231 DGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYT 290

Query: 281 FGSL 284
           +  L
Sbjct: 291 YNIL 294



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 79/212 (37%), Gaps = 39/212 (18%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S + F+ IL  + + K    A  L + M    ++P +   + L+  YC  G++     VL
Sbjct: 77  SVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVL 136

Query: 197 -----------------------------KKME------EEKLGADARTYDALVLGACRA 221
                                        K +E       +    D  TY  L+ G C+ 
Sbjct: 137 GMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKI 196

Query: 222 GRVEEAFVLLRRMVDDGQSVLYST--YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           G   EAF LL +M  +GQ V  +   Y  ++  L + G   +A        GR I  D  
Sbjct: 197 GLTREAFELLHKM--EGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVF 254

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            +  L     GL ++ E   +L +M  R++ +
Sbjct: 255 TYTCLIHGFCGLGQWREVTRLLCDMVDRNVNL 286


>gi|12039381|gb|AAG46167.1|AC018727_19 unknown protein [Oryza sativa Japonica Group]
          Length = 601

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 8/233 (3%)

Query: 69  TANTFNFITNTENSLSVLSDLCRTLA-RLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVV 126
           +A + N +      L+  S+L + L   L  G+   SA +  LI RLC+  K+DEA+R++
Sbjct: 208 SAASLNAVFACCTKLAATSELLQLLGFTLVSGYQLTSAMWTCLIARLCREGKLDEAIRML 267

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   G   + +T+ PI+  L R  R + A  L   M     SPDL  +N L+      
Sbjct: 268 AKMLASGSPPTVVTYTPIVRALYRAGRHDIATELFASMSSTNCSPDLVLHNVLMDCMTKD 327

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
               A  GV   + E ++  DA T   LV    RA  +     LL R+  D   + Y   
Sbjct: 328 KRYDAALGVYLNLHESQMKPDAYTLSTLV----RALHLSRNVSLLPRLFLDSADIPYDLV 383

Query: 247 A--HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           A   V+ AL + G+ +QAV+F +     DI+ D+  +  L   L  L R + A
Sbjct: 384 ACNSVLNALRKSGFPSQAVQFFINMIKCDIRPDSYSYVGLLDSLCQLGRIDHA 436



 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 15/169 (8%)

Query: 85  VLSDLCRTLARLDKGF----------PRKSAYDTLIGRLCKLKKIDE---ALRVVDIMAE 131
           +L  LC+ L R+D             P  +AY      LC L K      AL +++    
Sbjct: 423 LLDSLCQ-LGRIDHAINVYHSIVSSDPDSNAY-VHAAILCGLVKKGHNRMALMILNEAVR 480

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
             + L A+ +  +L  L +   +EEA  L + MK   ++ +   YN +L   C   +  A
Sbjct: 481 QNYALDAVCYTVVLHGLLQAHLIEEACMLFDKMKRSGMASNTCTYNIMLRGLCRTRDTHA 540

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
               L++ME   +  D+ +Y+ LV+   +   +  A  L   + ++  S
Sbjct: 541 LKWFLREMECSDVEMDSISYNILVVFLIKLQHISSATALDANIAENDHS 589


>gi|222613334|gb|EEE51466.1| hypothetical protein OsJ_32592 [Oryza sativa Japonica Group]
          Length = 706

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 8/233 (3%)

Query: 69  TANTFNFITNTENSLSVLSDLCRTLA-RLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVV 126
           +A + N +      L+  S+L + L   L  G+   SA +  LI RLC+  K+DEA+R++
Sbjct: 283 SAASLNAVFACCTKLAATSELLQLLGFTLVSGYQLTSAMWTCLIARLCREGKLDEAIRML 342

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   G   + +T+ PI+  L R  R + A  L   M     SPDL  +N L+      
Sbjct: 343 AKMLASGSPPTVVTYTPIVRALYRAGRHDIATELFASMSSTNCSPDLVLHNVLMDCMTKD 402

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
               A  GV   + E ++  DA T   LV    RA  +     LL R+  D   + Y   
Sbjct: 403 KRYDAALGVYLNLHESQMKPDAYTLSTLV----RALHLSRNVSLLPRLFLDSADIPYDLV 458

Query: 247 A--HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           A   V+ AL + G+ +QAV+F +     DI+ D+  +  L   L  L R + A
Sbjct: 459 ACNSVLNALRKSGFPSQAVQFFINMIKCDIRPDSYSYVGLLDSLCQLGRIDHA 511



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 15/167 (8%)

Query: 85  VLSDLCRTLARLDKGF----------PRKSAYDTLIGRLCKLKKIDE---ALRVVDIMAE 131
           +L  LC+ L R+D             P  +AY      LC L K      AL +++    
Sbjct: 498 LLDSLCQ-LGRIDHAINVYHSIVSSDPDSNAY-VHAAILCGLVKKGHNRMALMILNEAVR 555

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
             + L A+ +  +L  L +   +EEA  L + MK   ++ +   YN +L   C   +  A
Sbjct: 556 QNYALDAVCYTVVLHGLLQAHLIEEACMLFDKMKRSGMASNTCTYNIMLRGLCRTRDTHA 615

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
               L++ME   +  D+ +Y+ LV+   +   +  A  L+R MV+ G
Sbjct: 616 LKWFLREMECSDVEMDSISYNILVVFLIKLQHISSATALVREMVNLG 662



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 45/219 (20%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  L+  LC+L +ID A+ V               +H I+S              
Sbjct: 490 PDSYSYVGLLDSLCQLGRIDHAINV---------------YHSIVSS------------- 521

Query: 161 MEVMKEIRVSPDLTAYNY--LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
                     PD  AY +  +L     KG+      +L +   +    DA  Y  ++ G 
Sbjct: 522 ---------DPDSNAYVHAAILCGLVKKGHNRMALMILNEAVRQNYALDAVCYTVVLHGL 572

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV---MVCGGRDIK 275
            +A  +EEA +L  +M   G +    TY  ++  L R      A+K+    M C   D++
Sbjct: 573 LQAHLIEEACMLFDKMKRSGMASNTCTYNIMLRGLCR-TRDTHALKWFLREMECS--DVE 629

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
           +D+  +  L   LI L+  + A  +++EM    +++  K
Sbjct: 630 MDSISYNILVVFLIKLQHISSATALVREMVNLGMELSAK 668


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 123/266 (46%), Gaps = 7/266 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDL-ETVRYLLNKRARDCCFNTAN 71
           + Q++ +     K G  PD  T   Y+ L+N    E  L E +++L N  +  C  N   
Sbjct: 259 VGQAMKLLDEMRKKGCKPDVVT---YNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVI- 314

Query: 72  TFNFITNTENSLSVLSDLCRTLA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T N I  +  S     D  R L+  L KG  P    ++ LI  LC+ + +  A+ V++ M
Sbjct: 315 THNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKM 374

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            + G   ++++++P+L    + K+M+ A   +E+M      PD+  YN LLTA C  G +
Sbjct: 375 PKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKV 434

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            A   +L ++  +       TY+ ++ G  + G+ E A  LL  M   G      TY+ +
Sbjct: 435 DAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTL 494

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIK 275
           +  L R G   +A+K      G  IK
Sbjct: 495 LRGLGREGKVDEAIKIFHDMEGLSIK 520



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 117/274 (42%), Gaps = 38/274 (13%)

Query: 1   MSLLRKLPTKFLIPQSV---LVTRSFTKSGAFPD-------------EPTSAYYDDLVNA 44
           +  L  +P+    P  +   ++ RS   +G + D              P+   ++ L+N 
Sbjct: 298 IKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINF 357

Query: 45  AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG----- 99
              +R L     +L K  +  C   + ++N          +L   C+   ++D+      
Sbjct: 358 LCRKRLLGRAIDVLEKMPKHGCVPNSLSYN---------PLLHGFCQE-KKMDRAIEYLE 407

Query: 100 -------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
                  +P    Y+TL+  LCK  K+D A+ +++ ++  G     IT++ ++  LT+  
Sbjct: 408 IMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVG 467

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           + E A  L+E M+   + PD+  Y+ LL     +G +     +   ME   +   A TY+
Sbjct: 468 KTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYN 527

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           A++LG C+A +   A   L  MV+ G     +TY
Sbjct: 528 AIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATY 561



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 3/168 (1%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
             P    Y+ LIG  CK  +ID+AL V++ M+        +T++ IL  L    +++EA 
Sbjct: 172 AVPDVITYNVLIGGYCKSGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAM 228

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            +++   +    PD+  Y  L+ A C    +     +L +M ++    D  TY+ L+ G 
Sbjct: 229 EVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGI 288

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           C+ GR++EA   L  M   G      T+  ++ ++   G +  A + +
Sbjct: 289 CKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLL 336



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   A  +LI   C+  K  +A R+++I+   G     IT++ ++    +   +++A  
Sbjct: 138 IPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKA-- 195

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +EV++ + V+PD+  YN +L + C  G L     VL +  + +   D  TY  L+   C
Sbjct: 196 -LEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATC 254

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
               V +A  LL  M   G      TY  ++  + + G   +A+KF+
Sbjct: 255 NDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFL 301



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 70/163 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T++  LC   K+ EA+ V+D   +       IT+  ++        + +A  L
Sbjct: 206 PDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKL 265

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++    PD+  YN L+   C +G L      L  M       +  T++ ++   C 
Sbjct: 266 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCS 325

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR  +A  LL  M+  G S    T+  ++  L R     +A+
Sbjct: 326 TGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAI 368



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 3/193 (1%)

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           +L +  +++E L+ ++ M   G     I    ++    R  + ++A  +ME+++     P
Sbjct: 115 KLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVP 174

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           D+  YN L+  YC  G +     VL++M    +  D  TY+ ++   C +G+++EA  +L
Sbjct: 175 DVITYNVLIGGYCKSGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVL 231

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
            R +         TY  ++ A        QA+K +     +  K D   +  L + +   
Sbjct: 232 DRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKE 291

Query: 292 ERFNEANFILKEM 304
            R +EA   L  M
Sbjct: 292 GRLDEAIKFLNNM 304



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/208 (18%), Positives = 89/208 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y  LI   C    + +A++++D M + G     +T++ +++ + +  R++EA  
Sbjct: 240 YPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIK 299

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +  M      P++  +N +L + C  G       +L  M  +       T++ L+   C
Sbjct: 300 FLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLC 359

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R   +  A  +L +M   G      +Y  ++    +     +A++++ +   R    D  
Sbjct: 360 RKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIV 419

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
            + +L + L    + + A  IL +++ +
Sbjct: 420 TYNTLLTALCKDGKVDAAVEILNQLSSK 447



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 15/169 (8%)

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L R   +EE    +E M      PD+ A   L+  +C  G     + +++ +E      D
Sbjct: 116 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPD 175

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY+ L+ G C++G +++A  +L RM      V Y+T   ++ +L   G   +A++ + 
Sbjct: 176 VITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNT---ILRSLCDSGKLKEAMEVL- 231

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLER------FNEANFILKEMNKRDLK 310
                D +L  E +  + +  I +E         +A  +L EM K+  K
Sbjct: 232 -----DRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCK 275



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 25/227 (11%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           L+  L  K L+ +++ V     K G  P+   S  Y+ L++    E+ ++     L    
Sbjct: 354 LINFLCRKRLLGRAIDVLEKMPKHGCVPN---SLSYNPLLHGFCQEKKMDRAIEYLEIMV 410

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLI 110
              C+    T+N         ++L+ LC+   ++D               P    Y+T+I
Sbjct: 411 SRGCYPDIVTYN---------TLLTALCKD-GKVDAAVEILNQLSSKGCSPVLITYNTVI 460

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
             L K+ K + A+ +++ M   G     IT+  +L  L R  +++EA  +   M+ + + 
Sbjct: 461 DGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIK 520

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           P    YN ++   C     +     L  M E+       TY  L+ G
Sbjct: 521 PSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEG 567


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 2/275 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ L+NA  +E D++    +L+      C   A T+  +  +        ++  
Sbjct: 318 EPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEE 377

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            LA +  +   P +  ++T++  LC+   +D A+ VVD M+E G     +T+  IL  L 
Sbjct: 378 LLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLC 437

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              R+++A  L+  +K     PD  AY  +L   C          ++ +M       D  
Sbjct: 438 DVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEV 497

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           T++ +V   C+ G V+ A  ++ +M ++G S    TY  ++  L        A++ +   
Sbjct: 498 TFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDL 557

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                K D   F +L   L G++R+ +A  ++  M
Sbjct: 558 QSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANM 592



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 4/208 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  +C    +DEAL ++  +   G    A+T+ P+L  L   +R +E   L
Sbjct: 319 PDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEEL 378

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M     +PD   +N ++T+ C +G +     V+  M E    AD  TY +++ G C 
Sbjct: 379 LAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCD 438

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
            GRV++A  LL R+   G       Y  V+  L     + +A + +  M+C   D   D 
Sbjct: 439 VGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCS--DCPPDE 496

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
             F ++ + L      + A  ++++M++
Sbjct: 497 VTFNTVVASLCQKGLVDRAIRVVEQMSE 524



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 2/204 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++T++  LC+   +D A+RVV+ M+E G     +T++ I+  L     +++A  L
Sbjct: 494 PDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMEL 553

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  ++     PD+  +N LL   C          ++  M       D  T++ ++   C+
Sbjct: 554 LSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQ 613

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + +A   L+ M ++G     STY+ V+ ALL+ G    A++ +   G  +   D   
Sbjct: 614 KGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLS--GMTNGTPDLIT 671

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + ++ S L    +  EA  +L+ M
Sbjct: 672 YNTVISNLTKAGKMEEALDLLRVM 695



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 4/217 (1%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTL 109
           E    L+    R  C     TFN +  +     +L+    TL  + +    P  S Y  +
Sbjct: 583 EDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIV 642

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           +  L K  K   AL ++  M  G   L  IT++ ++S LT+  +MEEA  L+ VM    +
Sbjct: 643 VDALLKAGKAQAALELLSGMTNGTPDL--ITYNTVISNLTKAGKMEEALDLLRVMVSNGL 700

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            PD T Y  L    C +        +L+++++  L  D   Y+ ++LG CR  R + A  
Sbjct: 701 CPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAID 760

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
               MV  G     STY  ++ AL   G   +A + +
Sbjct: 761 CFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLL 797



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 3/213 (1%)

Query: 95  RLDKGFPRKS---AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL  G P       ++ LI  LC   +I +AL V D M   G   S +T+  +L    + 
Sbjct: 240 RLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKE 299

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
               +A  L++ M+     PD+  YN L+ A C +G++     +L  +       DA TY
Sbjct: 300 SGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTY 359

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
             ++   C + R +E   LL  M  +  +    T+  ++ +L + G   +A++ V     
Sbjct: 360 TPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSE 419

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                D   + S+   L  + R ++A  +L  +
Sbjct: 420 HGCVADIVTYSSILDGLCDVGRVDDAVELLSRL 452



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 110/281 (39%), Gaps = 21/281 (7%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---------NTENSLS 84
           T   Y+ +VN       +E  R L+N           +TF F              ++L+
Sbjct: 218 TVVTYNTMVNGYCRAGRIEDARRLINGMPF-----PPDTFTFNPLIRALCVRGRIPDALA 272

Query: 85  VLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           V  D+      L +G  P    Y  L+   CK     +A+ ++D M   G     +T++ 
Sbjct: 273 VFDDM------LHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNV 326

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +++ +     ++EA  ++  +      PD   Y  +L + C          +L +M    
Sbjct: 327 LINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNN 386

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
              D  T++ +V   C+ G V+ A  ++  M + G      TY+ ++  L  +G    AV
Sbjct: 387 CAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAV 446

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           + +        K DT  + ++   L   E++  A  ++ EM
Sbjct: 447 ELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEM 487



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 33/199 (16%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  LC    ID+A+ ++  +   G     +TF+ +L  L    R E+A  L
Sbjct: 529 PDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQL 588

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-----------------K 203
           M  M      PD   +N ++T+ C KG LT     LK M E                  K
Sbjct: 589 MANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLK 648

Query: 204 LG----------------ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            G                 D  TY+ ++    +AG++EEA  LLR MV +G     +TY 
Sbjct: 649 AGKAQAALELLSGMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYR 708

Query: 248 HVMGALLRLGYYAQAVKFV 266
            +   + R     +AV+ +
Sbjct: 709 SLAYGVCREDGTDRAVRML 727



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 110/249 (44%), Gaps = 7/249 (2%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
            T +   PDE T   ++ +V +   +  ++    +++  +   C     T++ I +    
Sbjct: 382 MTSNNCAPDEVT---FNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCD 438

Query: 83  LSVLSDLCRTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           +  + D    L+RL K +   P   AY T++  LC  ++ + A  ++  M         +
Sbjct: 439 VGRVDDAVELLSRL-KSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEV 497

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF+ +++ L +   ++ A  ++E M E   SPD+  YN ++   C +  +     +L  +
Sbjct: 498 TFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDL 557

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           +      D  T++ L+ G C   R E+A  L+  M+         T+  V+ +L + G  
Sbjct: 558 QSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLL 617

Query: 260 AQAVKFVMV 268
            QA++ + +
Sbjct: 618 TQAIETLKI 626



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 82/225 (36%), Gaps = 37/225 (16%)

Query: 118 KIDEALRVVDIMAEGG--------------------------------FGLSA--ITFHP 143
           +IDEAL + D MA GG                                 G SA  +T++ 
Sbjct: 165 EIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAALGPSATVVTYNT 224

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +++   R  R+E+A  L+  M      PD   +N L+ A C +G +     V   M    
Sbjct: 225 MVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRG 281

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
                 TY  L+   C+     +A  LL  M   G      TY  ++ A+   G   +A+
Sbjct: 282 CSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEAL 341

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
             +        K D   +  +   L G ER+ E   +L EM   +
Sbjct: 342 NILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNN 386


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 128/296 (43%), Gaps = 29/296 (9%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETV-RYLLNKRARDCCFNTANTFNFITNT 79
           R F K   F  +PT   Y  ++     E  L++  R+  + R              I  T
Sbjct: 135 RVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMG-----------IPPT 183

Query: 80  ENSLSVL-SDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVV 126
             SL+VL    C+    +DK              P    Y TLI  LC+ + I EA  ++
Sbjct: 184 VTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELL 243

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   G   S +T+  I+  L +   ++EA  L+E MK+  + P++  Y+ L+  +C  
Sbjct: 244 QEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKT 303

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G+ +    +L+ M +++L  +  +Y  L+ G C  G++ EA  +  RM   G       Y
Sbjct: 304 GHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLY 363

Query: 247 AHVMGALLRLGYYAQAVKF---VMVCGGRDIKLDTELFGSLGSKLI-GLERFNEAN 298
             ++  L  +  + +A  F   +++CG +  ++   L     +++I GL   N +N
Sbjct: 364 GKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSN 419



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 1/205 (0%)

Query: 101 PRKSAYDTLIGRLCKLK-KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P  ++ + LI   CK    +D+A+ +   M+  G    + T+  +++ L R + + EA  
Sbjct: 182 PTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKE 241

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M+    SP +  Y  ++   C   N+     +L+ M+++ +  +  TY +L+ G C
Sbjct: 242 LLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFC 301

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G    A  +L  M+         +Y+ ++  L   G   +A++       +  K D  
Sbjct: 302 KTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAG 361

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
           L+G + + L  + RF EA   L EM
Sbjct: 362 LYGKIVNCLCDVSRFQEAANFLDEM 386



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 126/325 (38%), Gaps = 33/325 (10%)

Query: 8   PTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCF 67
           PT   + Q +   R   K+    D  T+ Y      A G + DL T   +++K      F
Sbjct: 44  PTH--VQQLIQAERDIKKALIIFDSATAEY------ANGFKHDLNTFSLMISKLISANQF 95

Query: 68  NTANTF------NFITNTENSLSVLSDLCRTLARLDKGF---------------PRKSAY 106
             A T         I  TE+   +L  +CR   R+ K                 P + +Y
Sbjct: 96  RLAETLLDRMKEEKIDVTED---ILLSICRAYGRIHKPLDSIRVFHKMQDFHCKPTEKSY 152

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK-RMEEAWGLMEVMK 165
            +++  L +  ++  A R    M + G   +  + + ++    +    M++A  L   M 
Sbjct: 153 ISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMS 212

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                PD   Y  L+   C   ++     +L++ME +       TY +++ G C+   V+
Sbjct: 213 NHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVD 272

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA  LL  M D        TY+ +M    + G+ ++A   + +   + ++ +   + +L 
Sbjct: 273 EAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLL 332

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
           + L    + NEA  I   M  +  K
Sbjct: 333 NGLCNEGKINEALEIFDRMKLQGFK 357



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/188 (18%), Positives = 72/188 (38%), Gaps = 42/188 (22%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y ++I  LC+L  +DEA+R+++ M +     +  T+  ++    +      A  +
Sbjct: 253 PSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDI 312

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA------------ 208
           +E+M + R+ P++ +Y+ LL   C +G +     +  +M+ +    DA            
Sbjct: 313 LELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCD 372

Query: 209 ------------------------------RTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
                                         RT++ ++ G C       AF L   ++  G
Sbjct: 373 VSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRG 432

Query: 239 QSVLYSTY 246
            S+   T+
Sbjct: 433 ISITVDTF 440


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 2/204 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   Y+ L+     +  +     L+N+ A + C     T+N + N    +  +SD    
Sbjct: 363 PSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHL 422

Query: 93  L-ARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +   + KG P     Y+TLI   CK  K+D A  +V+ M   G     IT++ +L+ L +
Sbjct: 423 VDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCK 482

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             + EE   + + M+E   +P++  YN ++ + C    +     +L +M+ + L  D  +
Sbjct: 483 AGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVS 542

Query: 211 YDALVLGACRAGRVEEAFVLLRRM 234
           +  L  G C+ G ++ A+ L RRM
Sbjct: 543 FGTLFTGFCKIGDIDGAYQLFRRM 566



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 104/213 (48%), Gaps = 1/213 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KG  P    Y+TLI  L +   I  AL++++ MAE G   +  T++ +++ L +   +
Sbjct: 357 LGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCV 416

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  L++        PD+  YN L+  YC +  L + + ++ +M  + +  D  TY+ L
Sbjct: 417 SDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTL 476

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+AG+ EE   + + M + G +    TY  ++ +L +     +AV  +     + +
Sbjct: 477 LNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGL 536

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           K D   FG+L +    +   + A  + + M K+
Sbjct: 537 KPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQ 569



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 2/241 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N I +      ++ D  R L   + KGF P +  Y +LI   CK    D A+ V    
Sbjct: 297 TYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDG 356

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   S + ++ ++  L++   +  A  LM  M E    P++  YN ++   C  G +
Sbjct: 357 LGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCV 416

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
           +  S ++     +    D  TY+ L+ G C+  +++ A  ++ RM   G +    TY  +
Sbjct: 417 SDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTL 476

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L + G   + ++       +    +   +  +   L   ++ NEA  +L EM  + L
Sbjct: 477 LNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGL 536

Query: 310 K 310
           K
Sbjct: 537 K 537



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y   I   CK  +   ALR++  M E G   +A+ +  +++ L      + A  L + M 
Sbjct: 149 YTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEML 208

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG--- 222
              + PD+ A+N L+   C KG +  +  +L K+ +  +  +  T++  V G CR G   
Sbjct: 209 ARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALD 268

Query: 223 ------RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
                 RV EA   LR+MV+ G      TY  ++    + G    A
Sbjct: 269 RAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDA 314



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           +V R +++ G  PD  T   Y+ L+N        E V  +        C     T+N I 
Sbjct: 457 MVNRMWSQ-GMTPDVIT---YNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIV 512

Query: 78  NTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GF 134
           ++      +++    L  +  KG  P   ++ TL    CK+  ID A ++   M +    
Sbjct: 513 DSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDV 572

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
             +  T++ I+S  +    M  A  L  VMK     PD   Y  ++  +C  GN+T    
Sbjct: 573 CHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYK 632

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L +  E++      T+  ++   C   +V EA  ++  M+  G
Sbjct: 633 FLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKG 676



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 12/157 (7%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL---------TRG 151
           P   A++ L+  LCK   + E+ R++  + + G   +  TF+  +  L          R 
Sbjct: 214 PDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRN 273

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            R+ EA   +  M      PD   YN ++  YC KG +   + VLK    +    D  TY
Sbjct: 274 SRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTY 333

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
            +L+ G C+ G  + A  + +  +  G     VLY+T
Sbjct: 334 CSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNT 370



 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY T++  L    + D A  + D M         + F+ ++ VL +   + E+  L+  +
Sbjct: 183 AYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKV 242

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNL---------TATSGVLKKMEEEKLGADARTYDALV 215
            +  V P+L  +N  +   C +G L               L+KM       D  TY++++
Sbjct: 243 LKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSII 302

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G C+ G V++A  +L+  V  G      TY  ++    + G
Sbjct: 303 DGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDG 344


>gi|110289653|gb|AAP55169.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 631

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 8/233 (3%)

Query: 69  TANTFNFITNTENSLSVLSDLCRTLA-RLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVV 126
           +A + N +      L+  S+L + L   L  G+   SA +  LI RLC+  K+DEA+R++
Sbjct: 208 SAASLNAVFACCTKLAATSELLQLLGFTLVSGYQLTSAMWTCLIARLCREGKLDEAIRML 267

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   G   + +T+ PI+  L R  R + A  L   M     SPDL  +N L+      
Sbjct: 268 AKMLASGSPPTVVTYTPIVRALYRAGRHDIATELFASMSSTNCSPDLVLHNVLMDCMTKD 327

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
               A  GV   + E ++  DA T   LV    RA  +     LL R+  D   + Y   
Sbjct: 328 KRYDAALGVYLNLHESQMKPDAYTLSTLV----RALHLSRNVSLLPRLFLDSADIPYDLV 383

Query: 247 A--HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           A   V+ AL + G+ +QAV+F +     DI+ D+  +  L   L  L R + A
Sbjct: 384 ACNSVLNALRKSGFPSQAVQFFINMIKCDIRPDSYSYVGLLDSLCQLGRIDHA 436



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 15/167 (8%)

Query: 85  VLSDLCRTLARLDKGF----------PRKSAYDTLIGRLCKLKKIDE---ALRVVDIMAE 131
           +L  LC+ L R+D             P  +AY      LC L K      AL +++    
Sbjct: 423 LLDSLCQ-LGRIDHAINVYHSIVSSDPDSNAY-VHAAILCGLVKKGHNRMALMILNEAVR 480

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
             + L A+ +  +L  L +   +EEA  L + MK   ++ +   YN +L   C   +  A
Sbjct: 481 QNYALDAVCYTVVLHGLLQAHLIEEACMLFDKMKRSGMASNTCTYNIMLRGLCRTRDTHA 540

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
               L++ME   +  D+ +Y+ LV+   +   +  A  L+R MV+ G
Sbjct: 541 LKWFLREMECSDVEMDSISYNILVVFLIKLQHISSATALVREMVNLG 587



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 45/219 (20%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  L+  LC+L +ID A+ V               +H I+S              
Sbjct: 415 PDSYSYVGLLDSLCQLGRIDHAINV---------------YHSIVSS------------- 446

Query: 161 MEVMKEIRVSPDLTAYNY--LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
                     PD  AY +  +L     KG+      +L +   +    DA  Y  ++ G 
Sbjct: 447 ---------DPDSNAYVHAAILCGLVKKGHNRMALMILNEAVRQNYALDAVCYTVVLHGL 497

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV---MVCGGRDIK 275
            +A  +EEA +L  +M   G +    TY  ++  L R      A+K+    M C   D++
Sbjct: 498 LQAHLIEEACMLFDKMKRSGMASNTCTYNIMLRGLCR-TRDTHALKWFLREMECS--DVE 554

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
           +D+  +  L   LI L+  + A  +++EM    +++  K
Sbjct: 555 MDSISYNILVVFLIKLQHISSATALVREMVNLGMELSAK 593


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           P +  Y+ L++   ++ DLE      ++  +     + +T+N + +    E  +    D+
Sbjct: 276 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM 335

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            + + +  KG  P    Y+ LI    +      A  + + M   G   + +T+  ++ VL
Sbjct: 336 IKEMRK--KGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVL 393

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           +R  RM+EA  L E + +  VSPD+  +N ++  +C  GN+     +LK+M+ + +  D 
Sbjct: 394 SRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDE 453

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            T++ L+ G CR G+VEEA +LL  M   G    + +Y  ++    R G
Sbjct: 454 VTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRG 502



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 96/209 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  +CK  +++EA  + D M E G   +A+T++ ++        +E A+  
Sbjct: 241 PDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSY 300

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P ++ YN L+ A   +G +     ++K+M ++ +  DA TY+ L+ G  R
Sbjct: 301 RDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSR 360

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  + AF L   M+  G    + TY  ++  L R     +A         + +  D  +
Sbjct: 361 CGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIM 420

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F ++            A  +LKEM+++ +
Sbjct: 421 FNAMIDGHCANGNVERAFMLLKEMDRKSV 449



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 6/171 (3%)

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           TL+R          +D L G+L K ++       +  M   GF  + ++++ I+   +  
Sbjct: 168 TLSRDRLSVKSSIVFDLLEGKLKKAREF------IGFMEGLGFKPNVVSYNTIIHGYSSR 221

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +E A  +++ M+   + PD   Y  L++  C +G L   SG+  KM E  L  +A TY
Sbjct: 222 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 281

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + L+ G C  G +E AF     MV  G     STY  ++ AL   G   +A
Sbjct: 282 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 332



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 11/233 (4%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNA----AGHERDLETVRYLLNKRARDCCFNTANTFN 74
           + +   K G  PD  T   Y+ L+N        +R  +    +L+K   +    T  +  
Sbjct: 335 MIKEMRKKGIIPDAIT---YNILINGYSRCGNAKRAFDLHNEMLSK-GIEPTHVTYTSLI 390

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           ++ +  N +    DL   +  LD+G  P    ++ +I   C    ++ A  ++  M    
Sbjct: 391 YVLSRRNRMKEADDLFEKI--LDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKS 448

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
                +TF+ ++    R  ++EEA  L++ MK   + PD  +YN L++ Y  +G++    
Sbjct: 449 VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAF 508

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
            V  +M          TY+AL+   C+    + A  LL+ MV+ G S   STY
Sbjct: 509 XVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 561



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++TL+   C+  K++EA  ++D M   G     I+++ ++S   R   +++A+ +
Sbjct: 451 PDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXV 510

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            + M  I  +P L  YN L+   C          +LK+M  + +  D  TY +L+ G
Sbjct: 511 RDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEG 567


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 2/279 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   ++ L++A       E V  L  +       +   T++   N     S LS     
Sbjct: 81  PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 93  LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           LA++ K G+ P      +L+   C  K+I +A+ +VD M E G+     TF  ++  L  
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +  EA  L++ M +    PDL  Y  ++   C +G++     +LKKME+ K+ AD   
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ ++ G C+   +++A  L   M + G      TY+ ++  L   G ++ A + +    
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            R I  +   F +L    +   +  EA  +  EM KR +
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 359



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 76/163 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y TLI   CK K+++E + +   M++ G   + +T+  ++    + +  + A  
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 454

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M  + V P++  YN LL   C  G L     V + ++   +  D  TY+ ++ G C
Sbjct: 455 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMC 514

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +AG+VE+ + L   +   G S     Y  ++    R G   +A
Sbjct: 515 KAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEA 557



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 8/239 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           ++V +     + G  PD  T   Y  +VN      D++    LL K  +         +N
Sbjct: 206 EAVALVDQMVQRGCQPDLVT---YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 262

Query: 75  FITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            I +       + D       +D KG  P    Y +LI  LC   +  +A R++  M E 
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
               + +TF  ++    +  ++ EA  L + M +  + PD+  Y+ L+  +C    L   
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD---GQSVLYSTYAH 248
             + + M  +    +  TY  L+ G C+A RVEE   L R M      G +V Y+T  H
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIH 441



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 96/208 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI  L    K  EA+ +VD M + G     +T+  +++ L +   ++ A  L
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSL 245

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++ ++  D+  YN ++   C   ++     +  +M+ + +  D  TY +L+   C 
Sbjct: 246 LKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 305

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LL  M++   +    T++ ++ A ++ G   +A K       R I  D   
Sbjct: 306 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 365

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + SL +     +R +EA  + + M  +D
Sbjct: 366 YSSLINGFCMHDRLDEAKHMFELMISKD 393



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 93/200 (46%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + L  RL  + K+D+A+ +   M +     S + F+ +LS + +  + E    L E M+ 
Sbjct: 52  EILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQT 111

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
           + +S DL  Y+  +  +C +  L+    VL KM +     D  T  +L+ G C + R+ +
Sbjct: 112 LGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISD 171

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  L+ +MV+ G      T+  ++  L      ++AV  V     R  + D   +G++ +
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231

Query: 287 KLIGLERFNEANFILKEMNK 306
            L      + A  +LK+M K
Sbjct: 232 GLCKRGDIDLALSLLKKMEK 251



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 69/134 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCK  K+ +A+ V + +          T++ ++  + +  ++E+ W L
Sbjct: 466 PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWEL 525

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    VSP++ AYN +++ +C KG+      +LKKM+E+    ++ TY+ L+    R
Sbjct: 526 FCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLR 585

Query: 221 AGRVEEAFVLLRRM 234
            G  E +  L++ M
Sbjct: 586 DGDREASAELIKEM 599



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/284 (18%), Positives = 114/284 (40%), Gaps = 20/284 (7%)

Query: 31  DEPTSAYYDDLVNAAGHERDLETV----RYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           + PT   + +L  +   ER   +     R +L  R  D           I   ++++ + 
Sbjct: 23  NPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSD-----------IIKVDDAVDLF 71

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
            D+ ++     + FP    ++ L+  + K+ K +  + + + M   G      T+   ++
Sbjct: 72  GDMVKS-----RPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
              R  ++  A  ++  M ++   PD+   + LL  YC    ++    ++ +M E     
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D  T+  L+ G     +  EA  L+ +MV  G      TY  V+  L + G    A+  +
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLL 246

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  I+ D  ++ ++   L   +  ++A  +  EM+ + ++
Sbjct: 247 KKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIR 290



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 1/129 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  +CK  K+++   +   ++  G   + I ++ ++S   R    EEA  L
Sbjct: 501 PDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSL 560

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MKE    P+   YN L+ A    G+  A++ ++K+M       DA T   LV     
Sbjct: 561 LKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLH 619

Query: 221 AGRVEEAFV 229
            GR++++F+
Sbjct: 620 DGRLDKSFL 628



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 72/163 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+ EA ++ D M +        T+  +++      R++EA  +
Sbjct: 326 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 385

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E+M      P++  Y+ L+  +C    +     + ++M +  L  +  TY  L+ G  +
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           A   + A ++ ++MV  G      TY  ++  L + G  A+A+
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAM 488



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 58/132 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   C   ++DEA  + ++M       + +T+  ++    + KR+EE   L
Sbjct: 361 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL 420

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  +  +   Y  L+  +    +      V K+M    +  +  TY+ L+ G C+
Sbjct: 421 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCK 480

Query: 221 AGRVEEAFVLLR 232
            G++ +A V+  
Sbjct: 481 NGKLAKAMVVFE 492


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 4/172 (2%)

Query: 78  NTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           + + +L  + ++CR +   D GF P    Y  +I   CK KK DEA+ +   M       
Sbjct: 236 SQQQNLLKVDEVCREMK--DDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNP 293

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S   +   ++ L  G RM+EA+   E  K     P+   YN +++AYC+   +     ++
Sbjct: 294 SPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIV 353

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD-GQSVLYSTYA 247
            +M+E  +G +ARTYD +++   + GR +EA+ + +RM  + G     STYA
Sbjct: 354 GEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYA 405



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 9/211 (4%)

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK-RMEEAWGLMEVMKEIRVS 170
           R  + K I EAL+  + M + G       F+ ++ VL + K  +E+A  L + M++  + 
Sbjct: 163 RYVRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLE 222

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P+L +Y  L+  +  + NL     V ++M+++    D  TY  ++   C+A + +EA  +
Sbjct: 223 PNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGI 282

Query: 231 LRRMVD---DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
              M+    +    +Y T+   +G   R+    +A +F           +   + ++ S 
Sbjct: 283 YHDMLSKNVNPSPHIYCTFITGLGNGSRMD---EAFEFFEKSKASGFPPEAPTYNAVVSA 339

Query: 288 LIGLERFNEANFILKEMNKRDLKMGFKLRDY 318
                R ++A  I+ EM  ++L +G   R Y
Sbjct: 340 YCWSMRIDDAYRIVGEM--KELGIGPNARTY 368



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 105/266 (39%), Gaps = 45/266 (16%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           +  L+ A G  R  + +  L+++  +    N  +TF+ I        V+ +  +T  R++
Sbjct: 123 FHALIEALGKIRQFKMIWNLVDEMKQRKLLN-GDTFSLIARRYVRAKVIKEALKTFERME 181

Query: 98  K-GF-PRKSAYDTLIGRLCKLK-------------------------------------- 117
           K G  P+ S ++ LI  LCK K                                      
Sbjct: 182 KYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNL 241

Query: 118 -KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
            K+DE  R    M + GF    +T+  I++   + K+ +EA G+   M    V+P    Y
Sbjct: 242 LKVDEVCRE---MKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIY 298

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
              +T       +       +K +      +A TY+A+V   C + R+++A+ ++  M +
Sbjct: 299 CTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKE 358

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQA 262
            G      TY  ++  L++ G   +A
Sbjct: 359 LGIGPNARTYDIILVHLIKGGRTKEA 384


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 94/204 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  ++   C  +K  EA  ++  M E G     +T   +++   +  RM +A  +
Sbjct: 145 PSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRV 204

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E+MK     P++  YN L+  +C +G +     +L KM    +  DA TY+ L+ G C 
Sbjct: 205 LELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCI 264

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +E AF LLR M  DG      TY  ++ AL + G   QA         R IK +   
Sbjct: 265 DGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVT 324

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F SL + L    + + A   L++M
Sbjct: 325 FNSLINGLCKSGKVDIAWKFLEKM 348



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 4/204 (1%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +I   CK  ++ +ALRV+++M   G   +  T++ ++       ++ +A  L+  M+   
Sbjct: 188 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCG 247

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V+PD   YN L+   C  G++ +   +L+ ME + L AD  TY+AL+   C+ GR ++A 
Sbjct: 248 VNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQAC 307

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGS 286
            L   +   G      T+  ++  L + G    A KF+  MV  G     DT  + S   
Sbjct: 308 SLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAG--CTPDTYTYSSFIE 365

Query: 287 KLIGLERFNEANFILKEMNKRDLK 310
            L  ++   E    + EM ++D+K
Sbjct: 366 HLCKMKGSQEGLSFIGEMLQKDVK 389



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 116/263 (44%), Gaps = 10/263 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P++  Y  +V+    ER  +    +L +           T   + N       +SD  R 
Sbjct: 145 PSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRV 204

Query: 93  LA--RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L   +L    P    Y+ L+   C   K+ +A+ +++ M   G    A+T++    +L R
Sbjct: 205 LELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYN----LLIR 260

Query: 151 GK----RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           G+     +E A+ L+ +M+   +  D   YN L+ A C  G       +   +E   +  
Sbjct: 261 GQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKP 320

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A T+++L+ G C++G+V+ A+  L +MV  G +    TY+  +  L ++    + + F+
Sbjct: 321 NAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFI 380

Query: 267 MVCGGRDIKLDTELFGSLGSKLI 289
                +D+K  T  +  +  KL+
Sbjct: 381 GEMLQKDVKPSTVNYTIVIHKLL 403



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I  LC+   +  ALR + +M   G+   A TF+ ++    R  +++ A  L + M 
Sbjct: 14  YNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMP 73

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               + D+ +Y  L+  +C  G +     +  +M++     D   Y ALV G C+AGR E
Sbjct: 74  LRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ----PDMHMYAALVKGLCKAGRGE 129

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVM 250
           E  ++LRRM + G       YA V+
Sbjct: 130 EGLLMLRRMKELGWRPSTRAYAAVV 154



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 113/257 (43%), Gaps = 10/257 (3%)

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF--------PRKSAYDTLIGRL 113
           ARD  F+      F  +  +  +++   C T  R+D+          P    Y  L+  L
Sbjct: 65  ARDL-FDKMPLRGFAQDVVSYAALIEGFCET-GRIDEAVELFGEMDQPDMHMYAALVKGL 122

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           CK  + +E L ++  M E G+  S   +  ++      ++ +EA  +++ M E  ++P +
Sbjct: 123 CKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCV 182

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
                ++ AYC +G ++    VL+ M+      +  TY+ALV G C  G+V +A  LL +
Sbjct: 183 VTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNK 242

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
           M   G +    TY  ++      G+   A + + +  G  +  D   + +L + L    R
Sbjct: 243 MRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGR 302

Query: 294 FNEANFILKEMNKRDLK 310
            ++A  +   +  R +K
Sbjct: 303 TDQACSLFDSLETRGIK 319



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 32/327 (9%)

Query: 3   LLRKLPTKFLIPQSVLVT---RSFTKSGAFPD-------------EPTSAYYDDLVNAAG 46
           +L+++  K L P  V  T    ++ K G   D             +P    Y+ LV    
Sbjct: 169 MLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFC 228

Query: 47  HERDLETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSVLSDLCRTLARLDKG---FPR 102
           +E  +     LLNK  R C  N  A T+N +   +     +    R L RL +G      
Sbjct: 229 NEGKVHKAMALLNK-MRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLL-RLMEGDGLIAD 286

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           +  Y+ LI  LCK  + D+A  + D +   G   +A+TF+ +++ L +  +++ AW  +E
Sbjct: 287 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLE 346

Query: 163 VMKEIRVSPDLTAYNYLLTAYC-FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
            M     +PD   Y+  +   C  KG+    S  + +M ++ +      Y  ++    + 
Sbjct: 347 KMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLS-FIGEMLQKDVKPSTVNYTIVIHKLLK- 404

Query: 222 GRVEEAFVLLRR----MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
              E  + L+ R    MV  G +    TY   M A    G   +A   +M      + +D
Sbjct: 405 ---ERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVD 461

Query: 278 TELFGSLGSKLIGLERFNEANFILKEM 304
           T  + +L      + + + A  ILK+M
Sbjct: 462 TMAYNTLMDGHASIGQTDHAVSILKQM 488



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 7/185 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR---MEEA 157
           P    Y + I  LCK+K   E L  +  M +     S + +  ++  L + +    +   
Sbjct: 355 PDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART 414

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           WG    M     +PD+  Y   + AYC +G L     VL +M +  +  D   Y+ L+ G
Sbjct: 415 WG---EMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDG 471

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
               G+ + A  +L++M          TY  ++  L+R+      +        + I+L 
Sbjct: 472 HASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIEL- 530

Query: 278 TELFG 282
           T++FG
Sbjct: 531 TDVFG 535



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 83/208 (39%), Gaps = 4/208 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C    I+ A R++ +M   G      T++ +++ L +  R ++A  L
Sbjct: 250 PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSL 309

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + ++   + P+   +N L+   C  G +      L+KM       D  TY + +   C+
Sbjct: 310 FDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 369

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
               +E    +  M+          Y  V+  LL+   Y    +    MV  G +  + T
Sbjct: 370 MKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVT 429

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
                    + G  R NEA  +L EM+K
Sbjct: 430 YTTSMRAYCIEG--RLNEAENVLMEMSK 455



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 17/202 (8%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA------- 157
           AY+TL+     + + D A+ ++  M       +  T+  +L  L R + +E+        
Sbjct: 464 AYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAG 523

Query: 158 -W---------GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            W         GL +VMK+    P+   Y+ +L  +   G     + ++  M+E+ +  +
Sbjct: 524 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 583

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
              Y ALV   C++ R  +A+VL+  M+  G      +Y H++  L+  G   +A +  M
Sbjct: 584 EDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFM 643

Query: 268 VCGGRDIKLDTELFGSLGSKLI 289
               +D   D  ++  +   LI
Sbjct: 644 NSRWKDYSPDEIVWKVIIDGLI 665



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 40/95 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T++ ++  L R   +  A   + +M      PD   +N L+  YC    +     +  KM
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
                  D  +Y AL+ G C  GR++EA  L   M
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEM 107



 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 3/138 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y +++    +  + +EA  +V +M E    L+   +  +++   + KR  +AW 
Sbjct: 546 LPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWV 605

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M +    P L +Y +LL+    +G       +      +    D   +  ++ G  
Sbjct: 606 LVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLI 665

Query: 220 RAGRVE---EAFVLLRRM 234
           + G  +   E  ++L RM
Sbjct: 666 KKGHSDISREMIIMLERM 683



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           YN ++ + C + +L +    L  M       DA T+++L++G CR  +V+ A  L  +M 
Sbjct: 14  YNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMP 73

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
             G +    +YA ++      G   +AV+      G   + D  ++ +L   L    R  
Sbjct: 74  LRGFAQDVVSYAALIEGFCETGRIDEAVELF----GEMDQPDMHMYAALVKGLCKAGRGE 129

Query: 296 EANFILKEMNK 306
           E   +L+ M +
Sbjct: 130 EGLLMLRRMKE 140


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 173 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 232

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 233 FTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 292

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G Y 
Sbjct: 293 MKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYL 352

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++          + +LKEM +
Sbjct: 353 DAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQR 398



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 20/230 (8%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           ++A+G + D+ T   L+N   ++   + AN           + N     +++   C++  
Sbjct: 186 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKS-G 244

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+ 
Sbjct: 245 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYT 304

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       VL++M   
Sbjct: 305 TLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSA 364

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            L  D  TY  ++   C+ G V     LL+ M  DG      TY  +M  
Sbjct: 365 GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 56/135 (41%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  + + K  +  WG  E + E      L  +N L+
Sbjct: 73  DAIECYRLTREHKFWVPFDTCRKVLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILM 132

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C +G++     V   + +  L     +++ L+ G  R G ++E F L   M   G  
Sbjct: 133 HRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQ 192

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 193 PDVYTYSVLINGLCK 207



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 41/221 (18%), Positives = 87/221 (39%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  + KLK         + + E G+  S   F+ ++    
Sbjct: 77  CYRLTREHKFWVPFDTCRKVLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 136

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  +   + +  + P + ++N L+  Y   G+L     +   M    +  D  
Sbjct: 137 KEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVY 196

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C+  ++++A  L   M+D G      T+  ++    + G    A++     
Sbjct: 197 TYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQM 256

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + +  D   + +L   L       +A+ ++ EM+ + LK
Sbjct: 257 LSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 297


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 6/236 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           P +  Y+ L++   ++ DLE      ++  +     + +T+N + +    E  +    D+
Sbjct: 330 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM 389

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            + + +  KG  P    Y+ LI    +     +A  + + M   G   + +T+  ++ VL
Sbjct: 390 IKEMRK--KGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVL 447

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           +R  RM+EA  L E + +  VSPD+  +N ++  +C  GN+     +LK+M+ + +  D 
Sbjct: 448 SRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDE 507

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            T++ L+ G CR G+VEEA +LL  M   G    + +Y  ++    R G    A +
Sbjct: 508 VTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFR 563



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 35/253 (13%)

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           TL+R          +D L+   C+L++ DEA +   +M E G      T + +LS+  + 
Sbjct: 146 TLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKL 205

Query: 152 KRMEEAWGLMEVMKEIRVS-----------------------------------PDLTAY 176
            RME AW L   M  +R+S                                   P++ +Y
Sbjct: 206 NRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSY 265

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           N ++  Y  +GN+     +L  M  + +  D+ TY +L+ G C+ GR+EEA  L  +MV+
Sbjct: 266 NTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVE 325

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G      TY  ++      G   +A  +      + I      +  L   L    R  E
Sbjct: 326 IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGE 385

Query: 297 ANFILKEMNKRDL 309
           A+ ++KEM K+ +
Sbjct: 386 ADDMIKEMRKKGI 398



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 97/209 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  +CK  +++EA  + D M E G   +A+T++ ++        +E A+  
Sbjct: 295 PDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSY 354

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P ++ YN L+ A   +G +     ++K+M ++ +  DA TY+ L+ G  R
Sbjct: 355 RDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSR 414

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  ++AF L   M+  G    + TY  ++  L R     +A         + +  D  +
Sbjct: 415 CGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIM 474

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F ++            A  +LKEM+++ +
Sbjct: 475 FNAMVDGHCANGNVERAFMLLKEMDRKSV 503



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 9/232 (3%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNF 75
           + +   K G  PD  T   Y+ L+N     G+ +    +   +  +  +    T  +  +
Sbjct: 389 MIKEMRKKGIIPDAIT---YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIY 445

Query: 76  ITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           + +  N +    DL   +  LD+G  P    ++ ++   C    ++ A  ++  M     
Sbjct: 446 VLSRRNRMKEADDLFEKI--LDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSV 503

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
               +TF+ ++    R  ++EEA  L++ MK   + PD  +YN L++ Y  +G++     
Sbjct: 504 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFR 563

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           V  +M          TY+AL+   C+    + A  LL+ MV+ G S   STY
Sbjct: 564 VRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 615



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++TL+   C+  K++EA  ++D M   G     I+++ ++S   R   +++A+ +
Sbjct: 505 PDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV 564

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            + M  I  +P L  YN L+   C          +LK+M  + +  D  TY +L+ G
Sbjct: 565 RDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEG 621


>gi|115440379|ref|NP_001044469.1| Os01g0785700 [Oryza sativa Japonica Group]
 gi|20804913|dbj|BAB92593.1| drought-inducible protein 1OS [Oryza sativa Japonica Group]
 gi|37179506|gb|AAN05726.2| drought-inducible protein 1OS [Oryza sativa Indica Group]
 gi|113534000|dbj|BAF06383.1| Os01g0785700 [Oryza sativa Japonica Group]
 gi|125527974|gb|EAY76088.1| hypothetical protein OsI_04014 [Oryza sativa Indica Group]
 gi|125572269|gb|EAZ13784.1| hypothetical protein OsJ_03709 [Oryza sativa Japonica Group]
 gi|215704731|dbj|BAG94759.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215717015|dbj|BAG95378.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 434

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 99/202 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ L+  LCK+  +  AL  + +M + G     +TF+ +L+       M+ A  +
Sbjct: 197 PSVYSYNILLQALCKVPDLSAALDTMTLMEKSGISPDLVTFNTLLNGFYNHGDMDGAEKV 256

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E++ E  + PD   YN  L     +G +     V++KME++    D  +Y+ L+ G C+
Sbjct: 257 WEMITERNMVPDAKNYNAKLRGLVAQGRIEDAVAVVEKMEKDGPKPDTISYNELIRGYCK 316

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+EEA  L   M ++G      TY  ++  L++ G    A+K      G+++++D  +
Sbjct: 317 DGRLEEAKKLFEDMAENGYVANRGTYHTLIPCLVKAGELDYALKCCHEIYGKNLRVDCFV 376

Query: 281 FGSLGSKLIGLERFNEANFILK 302
              + + L+   R  +A  I++
Sbjct: 377 LQEVVTALVTASRVEDATKIVE 398



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 18/178 (10%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS-----PDLTAYNYLLTAYCFKGNLTA 191
           S +TF+ +L+        E    L    KEI VS     P + +YN LL A C   +L+A
Sbjct: 161 STMTFNSLLAAYVEAGEFE---ALAAAFKEIPVSNPSVVPSVYSYNILLQALCKVPDLSA 217

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA-----FVLLRRMVDDGQSVLYSTY 246
               +  ME+  +  D  T++ L+ G    G ++ A      +  R MV D ++     Y
Sbjct: 218 ALDTMTLMEKSGISPDLVTFNTLLNGFYNHGDMDGAEKVWEMITERNMVPDAKN-----Y 272

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              +  L+  G    AV  V        K DT  +  L        R  EA  + ++M
Sbjct: 273 NAKLRGLVAQGRIEDAVAVVEKMEKDGPKPDTISYNELIRGYCKDGRLEEAKKLFEDM 330


>gi|357140650|ref|XP_003571877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Brachypodium distachyon]
          Length = 753

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 6/217 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CK  ++ +A  ++  +   G   ++ T+  +L  L   +R  E   L
Sbjct: 464 PDVVTYNALISASCKADRLKDAKTILTRLIAEGLEPNSTTYCILLHSLCNKRRWAEVCDL 523

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK     PD+TAYN  +  +C  G+L     VL+KM  +K   D  TY+ L+    +
Sbjct: 524 LAHMKRANCEPDVTAYNIFINYFCKYGHLDQAIDVLEKMVSDKCCPDIVTYNTLLNAISK 583

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA-VKFVMVCGGRDIKLDTE 279
            G VEEA V+   +  +G  ++  TY  ++ AL   G   +A V F  +  GR I  D  
Sbjct: 584 EGMVEEALVIAHFIRQNGWQLVLITYNTLIDALANKGEVKKAMVLFDEMASGR-ISPDDI 642

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLR 316
            +GSL   ++G  + N +   L+ +N R L +GF+++
Sbjct: 643 TYGSL---VMGFCKKNMSEEALELLN-RTLALGFQVK 675



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 126/275 (45%), Gaps = 2/275 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L++A+     L+  + +L +   +     + T+  + ++  +    +++C 
Sbjct: 463 QPDVVTYNALISASCKADRLKDAKTILTRLIAEGLEPNSTTYCILLHSLCNKRRWAEVCD 522

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            LA + +    P  +AY+  I   CK   +D+A+ V++ M         +T++ +L+ ++
Sbjct: 523 LLAHMKRANCEPDVTAYNIFINYFCKYGHLDQAIDVLEKMVSDKCCPDIVTYNTLLNAIS 582

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +EEA  +   +++      L  YN L+ A   KG +     +  +M   ++  D  
Sbjct: 583 KEGMVEEALVIAHFIRQNGWQLVLITYNTLIDALANKGEVKKAMVLFDEMASGRISPDDI 642

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY +LV+G C+    EEA  LL R +  G  V  +T+  V+ AL R G    A + + V 
Sbjct: 643 TYGSLVMGFCKKNMSEEALELLNRTLALGFQVKTTTFIMVIQALCRDGKVEAAAEILRVM 702

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                  ++  + S+  ++    R  EA  + +E+
Sbjct: 703 VSETNNTNSSFYLSIVRRVAKSGRIEEAERLHQEL 737



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 37/242 (15%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP S  Y  L+++  ++R    V  LL    R  C      +N   N       L     
Sbjct: 498 EPNSTTYCILLHSLCNKRRWAEVCDLLAHMKRANCEPDVTAYNIFINYFCKYGHLDQAID 557

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L ++  DK  P    Y+TL+  + K   ++EAL +   + + G+ L  IT++ ++  L 
Sbjct: 558 VLEKMVSDKCCPDIVTYNTLLNAISKEGMVEEALVIAHFIRQNGWQLVLITYNTLIDALA 617

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK----------------------- 186
               +++A  L + M   R+SPD   Y  L+  +C K                       
Sbjct: 618 NKGEVKKAMVLFDEMASGRISPDDITYGSLVMGFCKKNMSEEALELLNRTLALGFQVKTT 677

Query: 187 ------------GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
                       G + A + +L+ M  E    ++  Y ++V    ++GR+EEA  L + +
Sbjct: 678 TFIMVIQALCRDGKVEAAAEILRVMVSETNNTNSSFYLSIVRRVAKSGRIEEAERLHQEL 737

Query: 235 VD 236
           +D
Sbjct: 738 ID 739



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 77/171 (45%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L  G P     + LI +LC+  ++  A+ V++ M   G   + ITF+ ++  +      +
Sbjct: 354 LSGGIPDTITCNMLIAQLCRGGQLSSAMSVLEDMRYSGTSPNGITFNTLIRCMCNQHMYD 413

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A    +    I   P +     L+   C K        VL ++  E    D  TY+AL+
Sbjct: 414 KAITFWKEQLRIGWPPYVMTNTLLVDLICKKCGSKRAMEVLDELSLEGCQPDVVTYNALI 473

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             +C+A R+++A  +L R++ +G     +TY  ++ +L     +A+    +
Sbjct: 474 SASCKADRLKDAKTILTRLIAEGLEPNSTTYCILLHSLCNKRRWAEVCDLL 524


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 146/309 (47%), Gaps = 9/309 (2%)

Query: 4   LRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR 63
           L + P+ F I  +  V     K G   D  T   ++ LVN    E  LE    +L +   
Sbjct: 176 LVRYPSSFSIASAREVFDDMVKIGVSLDVKT---FNVLVNGYCLEGKLEDALGMLERMVS 232

Query: 64  DCCFNTAN-TFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKID 120
           +   N  N T+N I    +    LSD+   L  + +    P +  Y+ L+   CKL  + 
Sbjct: 233 EFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLK 292

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA ++V++M +        T++ +++ +     + E   LM+VMK +++ PD+  YN L+
Sbjct: 293 EAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLI 352

Query: 181 TAYCFKGNLT-ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD-DG 238
              CF+  L+     ++++ME + +  +  T++  +   C+  + EE    ++ +V+  G
Sbjct: 353 DG-CFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHG 411

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            S    TY  ++ A L++G  + A++ +   G + IK++T    ++   L    + +EA+
Sbjct: 412 FSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAH 471

Query: 299 FILKEMNKR 307
            +L   +KR
Sbjct: 472 NLLDSAHKR 480



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 105/205 (51%), Gaps = 3/205 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           +T++  LCK +K+DEA  ++D   + G+ +  +T+  ++    R +++E+A+ + + MK 
Sbjct: 455 NTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKR 514

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
           I+++P +T +N L+   C  G          ++ E  L  D  T+++++LG C+ GRVE+
Sbjct: 515 IKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEK 574

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV-MVCGGRDIKLDTELFGSLG 285
           AF      +         T   ++  L + G   +A+ F   +   R++  DT  + ++ 
Sbjct: 575 AFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREV--DTVTYNTMI 632

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
           S     ++  EA  +L EM ++ L+
Sbjct: 633 SAFCKDKKLKEAYDLLSEMEEKRLE 657



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 7/185 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + +++LIG LC   K + A+   D +AE G      TF+ I+    +  R+E+A+  
Sbjct: 519 PTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEF 578

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                +    PD    N LL   C +G           +  E+   D  TY+ ++   C+
Sbjct: 579 YNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITER-EVDTVTYNTMISAFCK 637

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG------RDI 274
             +++EA+ LL  M +        TY  ++ +L+  G  ++A + +    G      R++
Sbjct: 638 DKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKKFSGKFGSMKRNL 697

Query: 275 KLDTE 279
            L+TE
Sbjct: 698 HLETE 702



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 1/158 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE-GGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P +  ++  +  LCK +K +E  R V  + E  GF    +T+H ++    +   +  A  
Sbjct: 378 PNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALE 437

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +M  M +  +  +    N +L A C +  +     +L    +     D  TY  L++G  
Sbjct: 438 MMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYF 497

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           R  +VE+AF +   M     +   +T+  ++G L   G
Sbjct: 498 REEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHG 535



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 46/229 (20%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   ++ L+    H    E      ++ A         TFN         S++   C+ 
Sbjct: 519 PTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFN---------SIILGYCKE 569

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             R++K F            P     + L+  LCK    ++AL   + +      +  +T
Sbjct: 570 -GRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITER-EVDTVT 627

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM- 199
           ++ ++S   + K+++EA+ L+  M+E R+ PD   YN ++T+    G L+    +LKK  
Sbjct: 628 YNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKKFS 687

Query: 200 ----------------------EEEKLGADARTYDALVLGACRAGRVEE 226
                                  +E+L  +A  Y  ++   C  GR++E
Sbjct: 688 GKFGSMKRNLHLETEKNPATSESKEELKTEAIAYSDVINELCSRGRLKE 736


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 124/282 (43%), Gaps = 7/282 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV--LSDLC 90
           P    Y  L++       ++    LL K     C   ANT  + T  +  L V  + D  
Sbjct: 541 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGC--RANTVTYSTVVDGLLKVGRMEDAV 598

Query: 91  RTLARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
             L ++ D G  P    Y+TLI    K +++ EA+ ++  M E GF  S +T+  +   L
Sbjct: 599 VVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGL 658

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGAD 207
            R  R +EA  +++ M     +P+   Y+ ++   C  G +T   G  +KM  +E +   
Sbjct: 659 CRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPH 718

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
              Y AL+ G C+AGR++EA+  L RM+  G+     T++ ++  L   G     ++   
Sbjct: 719 VIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFC 778

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               R  K D   + ++ +       F+ A  +L+EM    +
Sbjct: 779 GMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGI 820



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 11/193 (5%)

Query: 84  SVLSDLCRTLARLD----------KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           SVL  LC+    LD          +G  P    Y TLI  L K+ K+DEAL+++  M E 
Sbjct: 513 SVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL 572

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   + +T+  ++  L +  RME+A  ++  M++    PD   YN L+  +  +  L   
Sbjct: 573 GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREA 632

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            G+L++M E        TY  L  G CR+GR +EA  +L  M   G +    TY+ ++  
Sbjct: 633 VGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 692

Query: 253 LLRLGYYAQAVKF 265
           L + G   +A+ +
Sbjct: 693 LCKAGRVTEALGY 705



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 2/204 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ GF P    Y TL   LC+  + DEA+ ++D MA  G   +AIT+  I+  L +  R+
Sbjct: 640 LEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRV 699

Query: 155 EEAWGLMEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
            EA G  E M ++  V+P + AY+ L+   C  G +      L++M       D  T+  
Sbjct: 700 TEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSI 759

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+ G C AGR++    L   M + G       Y  ++ A    G ++ A   +       
Sbjct: 760 LINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHG 819

Query: 274 IKLDTELFGSLGSKLIGLERFNEA 297
           I  +T   G +   L G +R +EA
Sbjct: 820 IAKNTVTHGIVIKALCGNDRIDEA 843



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 100/251 (39%), Gaps = 33/251 (13%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           +AR +   P   AY  LI  LCK  +IDEA   ++ M   G     +TF  +++ L    
Sbjct: 709 MARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAG 768

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           R++    L   M E     D+ AYN ++ AYC KG  +A   +L++M+   +  +  T+ 
Sbjct: 769 RIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHG 828

Query: 213 ALVLGACRAGRV---------------------------------EEAFVLLRRMVDDGQ 239
            ++   C   R+                                 E+A  LLR MV DG 
Sbjct: 829 IVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGG 888

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           S     Y  VM  L + G    A K +     R    D   +  + S L   ++   A  
Sbjct: 889 SPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACD 948

Query: 300 ILKEMNKRDLK 310
             +EM +++LK
Sbjct: 949 YFEEMLRKNLK 959



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 123/314 (39%), Gaps = 45/314 (14%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           +F K+  F   PT   Y  +++    + +++    LL + A   C   A T+N + N   
Sbjct: 23  AFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALL 82

Query: 82  SLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
                 +    L R+  +   P    +  +I  LCK  +I+ A RVVD M + GF +  +
Sbjct: 83  GQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGF-VPDV 141

Query: 140 TFHPI-LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL------------------ 180
             H + L  L    R++EAW   + +  I  +PD   YN ++                  
Sbjct: 142 EIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQL 201

Query: 181 --------TAYCF---------KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
                   T + F          GNLT        M +  +  +  TYDAL+ G C+AG+
Sbjct: 202 LAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGK 261

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           ++ A  LLR          +S+  H +    RL    Q +K  M C    +      F S
Sbjct: 262 LDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLK-AMPCVPNVV-----CFNS 315

Query: 284 LGSKLIGLERFNEA 297
           L + L    R +EA
Sbjct: 316 LMNGLCQARRVDEA 329



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 116/253 (45%), Gaps = 8/253 (3%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           +SG  PD  T   ++ +++    E+ +     +  +     C     T++ + +  + ++
Sbjct: 501 ESGLSPDVIT---FNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMA 557

Query: 85  VLSDLCRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
            + +  + LA++ +   R +   Y T++  L K+ ++++A+ V+  M + G    A+T++
Sbjct: 558 KMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYN 617

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    + +R+ EA GL+  M E    P +  Y  L    C  G       +L  M   
Sbjct: 618 TLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAAR 677

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS-TYAHVMGALLRLGYYAQ 261
               +A TY ++V G C+AGRV EA     +M  D     +   Y+ ++  L + G   +
Sbjct: 678 GCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDE 737

Query: 262 AVKFV--MVCGGR 272
           A +F+  M+  GR
Sbjct: 738 AYEFLERMIRAGR 750



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 27/210 (12%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  YD L++       L+    LL  +      + A  F F        S+L  LC+ 
Sbjct: 244 PNTVTYDALIDGLCKAGKLDIALGLLRDKN-----SQAGMFAFS-------SLLHGLCQA 291

Query: 93  LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
             RL++           P    +++L+  LC+ +++DEA  + D+M E G     IT++ 
Sbjct: 292 -HRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNI 350

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EE 201
           +L  L + +R+ EA+  +E+M+     SP++  ++ L+   C  G +     V ++M   
Sbjct: 351 LLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAV 410

Query: 202 EKLGADARTYDALVLGACRAG---RVEEAF 228
           E +  +  TY  L+ G C+AG   R+E+ F
Sbjct: 411 EGISPNRFTYAFLLEGLCKAGDSRRLEQCF 440



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 5/155 (3%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           A+ +L+  LC+  +++EA++++  M       + + F+ +++ L + +R++EA+ L +VM
Sbjct: 280 AFSSLLHGLCQAHRLEEAIQLLKAMP---CVPNVVCFNSLMNGLCQARRVDEAFELFDVM 336

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE-EKLGADARTYDALVLGACRAGR 223
           KE   S D+  YN LL   C    +      ++ M   E    +  T+  L+ G C AGR
Sbjct: 337 KESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGR 396

Query: 224 VEEAFVLLRRMVD-DGQSVLYSTYAHVMGALLRLG 257
           V +A+ +  RMV  +G S    TYA ++  L + G
Sbjct: 397 VNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAG 431



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 16/187 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  L K   + +AL +++ M E G     ITF+ +L  L + +R+ +A  +
Sbjct: 471 PTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNV 530

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +   E    P++  Y+ L+        +     +L KM E    A+  TY  +V G  +
Sbjct: 531 FKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLK 590

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTY-------------AHVMGALLRLGYYAQAVK 264
            GR+E+A V+LR+M D G    +V Y+T                ++  +L  G++   V 
Sbjct: 591 VGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVT 650

Query: 265 FVMVCGG 271
           +  +C G
Sbjct: 651 YTTLCHG 657



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 96/209 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++++  LCK ++I +A  V     E G   + +T+  ++  L++  +M+EA  L
Sbjct: 506 PDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQL 565

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E+    +   Y+ ++      G +     VL++M +     DA TY+ L+ G  +
Sbjct: 566 LAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFK 625

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R+ EA  LLR M++ G      TY  +   L R G + +AV+ +     R    +   
Sbjct: 626 RQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAIT 685

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + S+   L    R  EA    ++M + ++
Sbjct: 686 YSSIVDGLCKAGRVTEALGYFEKMARDEV 714



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI  LCK  ++ +A        + GF  + +T+  ++  L R   +++   L+E M 
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMA 63

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               +P+   YN L+ A   +G       +L++M       +  T+  ++ G C+ G +E
Sbjct: 64  GRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIE 123

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            AF ++  MVD G       +  ++ AL  LG   +A  F
Sbjct: 124 AAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFF 163



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 21/239 (8%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ +V+       LE    +L   A    F++   F F T   + LS   +L   
Sbjct: 174 PDAVTYNTMVDGLYKAGRLEAAGMVLQLLAES--FSSPTVFTF-TIAVDGLSKAGNLTGA 230

Query: 93  LARLDKG-----FPRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILS 146
               D        P    YD LI  LCK  K+D AL ++ D  ++ G       F  +L 
Sbjct: 231 YEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGM----FAFSSLLH 286

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L +  R+EEA  L++ M  +   P++  +N L+   C    +     +   M+E    A
Sbjct: 287 GLCQAHRLEEAIQLLKAMPCV---PNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSA 343

Query: 207 DARTYDALVLGACRAGRVEEAF---VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           D  TY+ L+ G C+  R+ EA+    L+RR   +G S    T++ ++  L   G   QA
Sbjct: 344 DVITYNILLKGLCKLRRIPEAYRHVELMRRT--EGCSPNVVTFSTLIQGLCNAGRVNQA 400



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 17/224 (7%)

Query: 58  LNKRARDC----CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------P 101
           L K  R C     F  A  F F        +V+  LCR    +DKG             P
Sbjct: 11  LCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRD-NEVDKGCKLLEEMAGRGCAP 69

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
               Y+TL+  L    +  EA  +++ MA  G     ITF  I+  L +   +E A+ ++
Sbjct: 70  NAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVV 129

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           + M +    PD+  +  LL A C  G +       +++       DA TY+ +V G  +A
Sbjct: 130 DEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKA 189

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           GR+E A ++L+ + +   S    T+   +  L + G    A +F
Sbjct: 190 GRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEF 233



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 94/201 (46%), Gaps = 3/201 (1%)

Query: 105  AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +Y+TLI  L   ++ ++AL ++  M   G    A  +  ++  L +    E A  L++ M
Sbjct: 859  SYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEM 918

Query: 165  KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    SPDL  Y  +++       L       ++M  + L  DA  Y +L+   C+A +V
Sbjct: 919  RSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKV 978

Query: 225  EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            ++A+ LLR    +    +YST   ++ +L +     +A++ +     ++ +    ++ SL
Sbjct: 979  DDAWKLLRSSGIEPTITMYST---MVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSL 1035

Query: 285  GSKLIGLERFNEANFILKEMN 305
             +  +   R +EA  ++ ++ 
Sbjct: 1036 ATAYVAEGRVDEAVKLVNDLQ 1056



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 42/233 (18%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEA 122
           F+ + E    +L  LC  L R+D+ +            P    Y+T++  L K  +++ A
Sbjct: 137 FVPDVEIHTVLLHALCE-LGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAA 195

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
             V+ ++AE     +  TF   +  L++   +  A+   + M +  VSP+   Y+ L+  
Sbjct: 196 GMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDG 255

Query: 183 YCFKGNLTATSGVLK----------------------KMEE--EKLGA-----DARTYDA 213
            C  G L    G+L+                      ++EE  + L A     +   +++
Sbjct: 256 LCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNS 315

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           L+ G C+A RV+EAF L   M + G S    TY  ++  L +L    +A + V
Sbjct: 316 LMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHV 368



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 4/175 (2%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T++ +++ L +  R+ +A+       +    P +  Y+ ++   C    +     +L++
Sbjct: 2   VTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M       +A TY+ LV      GR +EAF LL RM  +G      T+  ++  L + G 
Sbjct: 62  MAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGE 121

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
              A + V     R    D E+   L   L  L R +EA F  +++    L +GF
Sbjct: 122 IEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQV----LLIGF 172



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 2/198 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY+ +I   C   +   A  +++ M   G   + +T   ++  L    R++EA      +
Sbjct: 791 AYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSI 850

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E     D  +YN L+T+            +L+ M  +    DA  Y  ++ G  +AG  
Sbjct: 851 PED--CRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSP 908

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           E A  LL+ M   G S    TY  ++  L +      A  +      +++K D  ++ SL
Sbjct: 909 EVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSL 968

Query: 285 GSKLIGLERFNEANFILK 302
                  ++ ++A  +L+
Sbjct: 969 IDAFCKADKVDDAWKLLR 986


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 97/211 (45%), Gaps = 3/211 (1%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KGF P    Y T+I  LCK  K+ EAL +V+ M E G      T+  I+  L R  +++
Sbjct: 3   EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVD 62

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L   M E   S +  AYN L+   C   N+     +L++M  +    D  TY+ ++
Sbjct: 63  EADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTIL 122

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRD 273
            G CR G+V EA      M   G S     Y  ++ AL + G  A+A      M    R 
Sbjct: 123 SGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRK 182

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +  D   + +L      +E+ +EA  + K++
Sbjct: 183 VAPDLITYNTLIDGFCRVEKTDEAMKLFKDV 213



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           MAE GF    +T+  I+S L +  ++ EA  ++E M E  V+PD+  Y  ++   C  G 
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +     +  KM E    A+   Y+AL+ G C+   +E A+ LL  M   G      TY  
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++  L R+G  ++A +F      R    D   +  L   L    +  EA  + K M+  D
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 309 LKMGFKLRDY 318
            K+   L  Y
Sbjct: 181 RKVAPDLITY 190



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 4/223 (1%)

Query: 86  LSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           + D  + L  + K    P    Y+ L+  LCK   +D+A  +   M + G     +++  
Sbjct: 308 VDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSV 367

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +L+ L +  ++ +A  L + M E ++ PD+  +N L+   C  G L     +L  M E  
Sbjct: 368 VLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHN 427

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           +  D  T   L+ G CR  R +EA  L + MV+ G       +  V+  L R G  AQA+
Sbjct: 428 VLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQAL 487

Query: 264 KFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            F   MV    +   D   + +L + LI   R ++A    ++M
Sbjct: 488 LFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQM 530



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 15/252 (5%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI-- 76
           V    +K GA PD  T   Y+ L++       ++    L +    + C     +++ +  
Sbjct: 314 VLEEMSKIGAVPDVVT---YNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLN 370

Query: 77  ----TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
               TN  +   VL D  R + R  K  P    ++ L+  LCK  K+DEA  ++D+M+E 
Sbjct: 371 GLCKTNKVHDARVLFD--RMIER--KLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEH 426

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
                 +T   ++  L R KR +EA  L + M E     D+  +N +L   C +G L   
Sbjct: 427 NVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQA 486

Query: 193 SGVLKKM--EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               K M   + +   D  TY  LV     AGRV++A    ++M   G +  Y  Y  +M
Sbjct: 487 LLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLM 546

Query: 251 GALLRLGYYAQA 262
             L + G + QA
Sbjct: 547 NGLRKQGRHIQA 558



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 2/209 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  ++  LCK  K+ +A  + D M E       +TF+ ++  L +  +++EA  L
Sbjct: 360 PDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDL 419

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++VM E  V PD      L+   C          + + M E+   AD   ++ ++ G CR
Sbjct: 420 LDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCR 479

Query: 221 AGRVEEAFVLLRRMV-DDGQ-SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            G++ +A +  + MV  DG+ S    TY  ++ AL+  G   QAV +     G     D 
Sbjct: 480 EGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDY 539

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKR 307
             + +L + L    R  +A+ + + M ++
Sbjct: 540 VAYNTLMNGLRKQGRHIQADRLTQAMKEK 568



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 81/162 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   C+++K DEA+++   +   G+    +T++ IL  L R   M+EA  +
Sbjct: 185 PDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEM 244

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +   +P+   Y+ +L+ +C  GN+     + ++M E++   D    +A++   C+
Sbjct: 245 FKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCK 304

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           A +V++A  +L  M   G      TY  ++  L +     +A
Sbjct: 305 AKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKA 346


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 6/236 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           P +  Y+ L++   ++ DLE      ++  +     + +T+N + +    E  +    D+
Sbjct: 352 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM 411

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            + + +  KG  P    Y+ LI    +     +A  + + M   G   + +T+  ++ VL
Sbjct: 412 IKEMRK--KGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVL 469

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           +R  RM+EA  L E + +  VSPD+  +N ++  +C  GN+     +LK+M+ + +  D 
Sbjct: 470 SRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDE 529

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            T++ L+ G CR G+VEEA +LL  M   G    + +Y  ++    R G    A +
Sbjct: 530 VTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFR 585



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 35/253 (13%)

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           TL+R          +D L+   C+L++ DEA +   +M E G      T + +LS+  + 
Sbjct: 168 TLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKL 227

Query: 152 KRMEEAWGLMEVMKEIRVS-----------------------------------PDLTAY 176
            RME AW L   M  +R+S                                   P++ +Y
Sbjct: 228 NRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSY 287

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           N ++  Y  +GN+     +L  M  + +  D+ TY +L+ G C+ GR+EEA  L  +MV+
Sbjct: 288 NTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVE 347

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G      TY  ++      G   +A  +      + I      +  L   L    R  E
Sbjct: 348 IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGE 407

Query: 297 ANFILKEMNKRDL 309
           A+ ++KEM K+ +
Sbjct: 408 ADDMIKEMRKKGI 420



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 97/209 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  +CK  +++EA  + D M E G   +A+T++ ++        +E A+  
Sbjct: 317 PDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSY 376

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P ++ YN L+ A   +G +     ++K+M ++ +  DA TY+ L+ G  R
Sbjct: 377 RDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSR 436

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  ++AF L   M+  G    + TY  ++  L R     +A         + +  D  +
Sbjct: 437 CGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIM 496

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F ++            A  +LKEM+++ +
Sbjct: 497 FNAMVDGHCANGNVERAFMLLKEMDRKSV 525



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 9/232 (3%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNF 75
           + +   K G  PD  T   Y+ L+N     G+ +    +   +  +  +    T  +  +
Sbjct: 411 MIKEMRKKGIIPDAIT---YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIY 467

Query: 76  ITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           + +  N +    DL   +  LD+G  P    ++ ++   C    ++ A  ++  M     
Sbjct: 468 VLSRRNRMKEADDLFEKI--LDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSV 525

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
               +TF+ ++    R  ++EEA  L++ MK   + PD  +YN L++ Y  +G++     
Sbjct: 526 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFR 585

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           V  +M          TY+AL+   C+    + A  LL+ MV+ G S   STY
Sbjct: 586 VRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 637



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++TL+   C+  K++EA  ++D M   G     I+++ ++S   R   +++A+ +
Sbjct: 527 PDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV 586

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            + M  I  +P L  YN L+   C          +LK+M  + +  D  TY +L+ G
Sbjct: 587 RDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEG 643


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 13/247 (5%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLK 117
           AN+  F  N      ++  LC+ L ++D+              P    Y TL+  LCK +
Sbjct: 165 ANSKGFQPNLLTYNLIIKALCK-LGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKER 223

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           ++DEA+ ++D M   G   + +TF+ ++  L++   +  A  L++ M      P+   YN
Sbjct: 224 RVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYN 283

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+   C KG L     +L+KM   K   +  TY  ++ G  +  R E+   +L  M + 
Sbjct: 284 TLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEER 343

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           GQ      Y+ ++  L + G    AV+       +  K +  ++G+    L   E+ +EA
Sbjct: 344 GQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEA 403

Query: 298 NFILKEM 304
             IL+EM
Sbjct: 404 EDILQEM 410



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 8/236 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+N    ER ++   +LL++   + C     TFN + +   +LS   DL R 
Sbjct: 207 PDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLID---ALSKNGDLSRA 263

Query: 93  LARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
              +D  F     P +  Y+TLI  LC   K+D+AL +++ M       + +T+  I++ 
Sbjct: 264 AKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIING 323

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L + +R E+   ++  M+E     +   Y+ L++    +G       + K+M E+    +
Sbjct: 324 LVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPN 383

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
              Y A + G CR  + +EA  +L+ M+  G      TY+ +M    + G   +A+
Sbjct: 384 VVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAI 439



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 1/214 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P    Y+ +I  LCKL +ID A+     M          T+  +++ L + +R++E
Sbjct: 168 KGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDE 227

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L++ M+     P+   +N L+ A    G+L+  + ++  M  +    +  TY+ L+ 
Sbjct: 228 AVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIH 287

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C  G++++A  LL +MV         TY  ++  L++       V  +M    R  K 
Sbjct: 288 GLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKA 347

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  ++ SL S L    +   A  + KEM ++  K
Sbjct: 348 NEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCK 381



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 119/291 (40%), Gaps = 8/291 (2%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           LV   F K G  P+E T   Y+ L++    +  L+    LL K     C     T+  I 
Sbjct: 266 LVDNMFLK-GCVPNEVT---YNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTII 321

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N         D    L  +++   + + Y   +LI  L K  K + A+R+   MAE G  
Sbjct: 322 NGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCK 381

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + + +   +  L R ++ +EA  +++ M      P+   Y+ L+  +  KG+      V
Sbjct: 382 PNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILV 441

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            K+M  + +  +      L+ G C +GR+ EA  +   M+ +G       Y+ ++  L  
Sbjct: 442 WKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCD 501

Query: 256 LGYYAQAVK--FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +G   + +K  + M C     + D   +  L + L   +    A  +L  M
Sbjct: 502 VGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSM 552



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KGF P    Y +L+    K     +A+ V   M       + +    +L+ L    R+
Sbjct: 411 LSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRL 470

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME--EEKLGADARTYD 212
            EA  +   M    + PD+ AY+ ++   C  G++     +  +M+  E K   D  TY+
Sbjct: 471 REALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYN 530

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDG 238
            L    CR   +  A  LL  M+D+G
Sbjct: 531 ILFNALCRQDNLTRAIDLLNSMLDEG 556



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK-- 165
            L+  LC+  ++ EAL V   M   G     + +  ++  L     +++   L   M+  
Sbjct: 459 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQ 518

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           E +  PD+  YN L  A C + NLT    +L  M +E    D+ T
Sbjct: 519 EPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLT 563


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 4/248 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L++  G    L+   Y  NK        T  ++N + N +     +  +   
Sbjct: 398 PNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMK-MAEL 456

Query: 93  LAR--LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           L +  +DKG  P  + Y +LI   CK   + +A ++   M   G   + +TF  ++  L 
Sbjct: 457 LFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLC 516

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  +M EA  L + M E+++ P+   YN L+  +C +GN T    +L +M ++ L  D  
Sbjct: 517 QINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTY 576

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C  GRV EA   +  +    Q +    Y  ++    + G   +A+      
Sbjct: 577 TYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEM 636

Query: 270 GGRDIKLD 277
            GR +++D
Sbjct: 637 VGRGLQMD 644



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I  LCK  K++EA  +  +MAE G   + +T+  ++    R  +++ A+  
Sbjct: 363 PNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYY 422

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  +S  + +YN ++   C  G +     + K+M ++ L     TY +L+ G C+
Sbjct: 423 FNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCK 482

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G V +AF L   M   G +    T+  ++  L ++   A+A K 
Sbjct: 483 DGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKL 527



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 97/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P ++A   LI  L K+  I+ A  +++ + + G   +   ++ +++ L +  ++EEA  L
Sbjct: 328 PSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELL 387

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             VM E  ++P+   Y  L+  +  +  L        KM E  + A   +Y++++   C+
Sbjct: 388 FSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCK 447

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+++ A +L + MVD G     +TY  ++    + G   +A K      G+ I  +T  
Sbjct: 448 FGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVT 507

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F +L   L  + +  EA+ +  EM
Sbjct: 508 FTALICGLCQINKMAEASKLFDEM 531



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+++I   CK  K+  A  +   M + G   +  T+  ++S   +   + +A+ L   M
Sbjct: 437 SYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEM 496

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               ++P+   +  L+   C    +   S +  +M E K+  +  TY+ L+ G CR G  
Sbjct: 497 TGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNT 556

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
             AF LL  M+  G S    TY  ++  L   G  ++A +F+     +  +LD   + +L
Sbjct: 557 TRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTAL 616

Query: 285 GSKLIGLERFNEANFILKEMNKRDLKM 311
                   R  EA    +EM  R L+M
Sbjct: 617 LQGFCKEGRIKEALVARQEMVGRGLQM 643



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 1/156 (0%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    Y   +  L K   ++ AL++ + M +G F  + +T++ ++    +  + +EA
Sbjct: 744 EAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFA-NTVTYNILIRGYCQIGKFQEA 802

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L++VM  I + PD   Y+  +  YC +GN+ A   + + M +  L  D   ++ L+  
Sbjct: 803 AKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHA 862

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            C  G ++ A  L   M+  G     STY  +M  L
Sbjct: 863 CCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQL 898



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           F   S +D LI    + K++ + + VV++M + G      T   +L+ L R ++  +   
Sbjct: 152 FSSSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLE 211

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + +    V PD   Y  ++   C   +      ++ + E         TY+  + G C
Sbjct: 212 LFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLC 271

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           ++ RV EA  + R + + G      TY  ++  L R+
Sbjct: 272 KSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRI 308



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 39/253 (15%)

Query: 3   LLRKLPTKFLIPQSVLVT---RSFTKSGAFPDE-------------PTSAYYDDLVNA-- 44
           LLR++  K + P +V+ T     F KSG                  P S  Y  LVN   
Sbjct: 666 LLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLF 725

Query: 45  -AGH--ERDLETVRYLLNKRARDC----CFNTANTFNFIT---NTENSLSVLSDLCRTLA 94
            AG+  E  L   R L+ +   +     CF      + +T   N EN+L + +      A
Sbjct: 726 KAGYVNEAKLLFKRMLVGEAIPNHITYGCF-----LDHLTKEGNMENALQLHN------A 774

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
            L   F     Y+ LI   C++ K  EA +++D+M   G     IT+   +    +   +
Sbjct: 775 MLQGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNV 834

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A  + E M +  + PD   +N+L+ A C  G L     +   M    L     TY +L
Sbjct: 835 DAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSL 894

Query: 215 VLGACRAGRVEEA 227
           ++   +  R+ + 
Sbjct: 895 MVQLAQRARLTQV 907



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 3/208 (1%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P +  Y+ LI   C+      A  ++D M + G      T+ P+++ L    R+ EA
Sbjct: 535 KILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEA 594

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
              +  +       D   Y  LL  +C +G +       ++M    L  D  +Y  L+ G
Sbjct: 595 KEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISG 654

Query: 218 ACRAG-RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           A     R+   F LLR M   G       Y  ++   ++ G   +A +F  +  G     
Sbjct: 655 ALNQNDRI--LFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVP 712

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           ++  + +L + L      NEA  + K M
Sbjct: 713 NSVTYTALVNGLFKAGYVNEAKLLFKRM 740



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 12/183 (6%)

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           ++DL     RLD+       Y  L+   CK  +I EAL     M   G  +  +++    
Sbjct: 598 INDLHHKHQRLDE-----LCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSY---- 648

Query: 146 SVLTRGKRMEEAWGLMEVMKEIR---VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
           +VL  G   +    L E+++E+    + PD   Y  L+  +   GNL         M  E
Sbjct: 649 AVLISGALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGE 708

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
               ++ TY ALV G  +AG V EA +L +RM+       + TY   +  L + G    A
Sbjct: 709 GYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENA 768

Query: 263 VKF 265
           ++ 
Sbjct: 769 LQL 771


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 13/247 (5%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLK 117
           AN+  F  N      ++  LC+ L ++D+              P    Y TL+  LCK +
Sbjct: 189 ANSKGFQPNLLTYNLIIKALCK-LGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKER 247

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           ++DEA+ ++D M   G   + +TF+ ++  L++   +  A  L++ M      P+   YN
Sbjct: 248 RVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYN 307

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+   C KG L     +L+KM   K   +  TY  ++ G  +  R E+   +L  M + 
Sbjct: 308 TLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEER 367

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           GQ      Y+ ++  L + G    AV+       +  K +  ++G+    L   E+ +EA
Sbjct: 368 GQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEA 427

Query: 298 NFILKEM 304
             IL+EM
Sbjct: 428 EDILQEM 434



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 8/236 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+N    ER ++   +LL++   + C     TFN + +   +LS   DL R 
Sbjct: 231 PDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLID---ALSKNGDLSRA 287

Query: 93  LARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
              +D  F     P +  Y+TLI  LC   K+D+AL +++ M       + +T+  I++ 
Sbjct: 288 AKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIING 347

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L + +R E+   ++  M+E     +   Y+ L++    +G       + K+M E+    +
Sbjct: 348 LVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPN 407

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
              Y A + G CR  + +EA  +L+ M+  G      TY+ +M    + G   +A+
Sbjct: 408 VVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAI 463



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 1/214 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P    Y+ +I  LCKL +ID A+     M          T+  +++ L + +R++E
Sbjct: 192 KGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDE 251

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L++ M+     P+   +N L+ A    G+L+  + ++  M  +    +  TY+ L+ 
Sbjct: 252 AVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIH 311

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C  G++++A  LL +MV         TY  ++  L++       V  +M    R  K 
Sbjct: 312 GLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKA 371

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  ++ SL S L    +   A  + KEM ++  K
Sbjct: 372 NEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCK 405



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 119/291 (40%), Gaps = 8/291 (2%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           LV   F K G  P+E T   Y+ L++    +  L+    LL K     C     T+  I 
Sbjct: 290 LVDNMFLK-GCVPNEVT---YNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTII 345

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N         D    L  +++   + + Y   +LI  L K  K + A+R+   MAE G  
Sbjct: 346 NGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCK 405

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + + +   +  L R ++ +EA  +++ M      P+   Y+ L+  +  KG+      V
Sbjct: 406 PNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILV 465

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            K+M  + +  +      L+ G C +GR+ EA  +   M+ +G       Y+ ++  L  
Sbjct: 466 WKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCD 525

Query: 256 LGYYAQAVK--FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +G   + +K  + M C     + D   +  L + L   +    A  +L  M
Sbjct: 526 VGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSM 576



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KGF P    Y +L+    K     +A+ V   M       + +    +L+ L    R+
Sbjct: 435 LSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRL 494

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME--EEKLGADARTYD 212
            EA  +   M    + PD+ AY+ ++   C  G++     +  +M+  E K   D  TY+
Sbjct: 495 REALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYN 554

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDG 238
            L    CR   +  A  LL  M+D+G
Sbjct: 555 ILFNALCRQDNLTRAIDLLNSMLDEG 580



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK-- 165
            L+  LC+  ++ EAL V   M   G     + +  ++  L     +++   L   M+  
Sbjct: 483 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQ 542

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           E +  PD+  YN L  A C + NLT    +L  M +E    D+ T
Sbjct: 543 EPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLT 587


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y   +  L K K++++AL V ++M        A  +  ++ VLT+  R+++AW +
Sbjct: 337 PNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDV 396

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK+  VSPDL  YN ++T+ C          +L++MEE+    D +TY  L+   CR
Sbjct: 397 FEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCR 456

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             R++    LL  M  +  S+   TY  ++G L + G    A  F
Sbjct: 457 KKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACSF 501



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 2/187 (1%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
            +FN + +       L D  + +  +DK GF P   +Y   I   CKLK       +   
Sbjct: 270 QSFNILLHGYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSE 329

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M E     + IT+   +  L + K++ +A  + E+MK     PD + Y+ L+      G 
Sbjct: 330 MQEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGR 389

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L     V + M+++ +  D  TY+ ++  AC     E A  LLRRM +D       TYA 
Sbjct: 390 LKDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAP 449

Query: 249 VMGALLR 255
           ++    R
Sbjct: 450 LLKMCCR 456



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 2/186 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y   ++A G  + +     +      +CC   A+ ++ +         L D   
Sbjct: 336 KPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWD 395

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               + K    P    Y+T+I   C   + + AL+++  M E        T+ P+L +  
Sbjct: 396 VFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCC 455

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R KR++    L+  M +  +S DL  Y  L+   C  G L       ++M  + L    R
Sbjct: 456 RKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGLIPRDR 515

Query: 210 TYDALV 215
           TY  LV
Sbjct: 516 TYKMLV 521


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 115/263 (43%), Gaps = 11/263 (4%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
             FPD   +  Y+ +++    +  L   R LL     +      NTFN + +    L  L
Sbjct: 242 SCFPD---NVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWL 298

Query: 87  SDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +  + +  + +    P    Y+ LIG LCK  KIDEA R+ D M         +T++ +
Sbjct: 299 KEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTL 358

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++         + + L++ M+   V P+   YN ++  Y  +G +      L+KMEE   
Sbjct: 359 INGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGF 418

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQ 261
             D  T++ L+ G C+AGR+ EAF ++  M   G    SV  +T  H +    +L     
Sbjct: 419 SPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLD---D 475

Query: 262 AVKFVMVCGGRDIKLDTELFGSL 284
           A K +     R   +D   +G+L
Sbjct: 476 AYKLLSSASKRGYFVDEVSYGTL 498



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 108/249 (43%), Gaps = 36/249 (14%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           + GF P    ++TLI   CK  ++ EA R++D M+  G  ++++T + IL  L   ++++
Sbjct: 415 ESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLD 474

Query: 156 EAWGLM-----------------------------------EVMKEIRVSPDLTAYNYLL 180
           +A+ L+                                   + MKE  + P +  YN ++
Sbjct: 475 DAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMI 534

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
              C  G    +   L ++ E  L  D  TY+ ++LG CR G+VE+AF    +MV     
Sbjct: 535 GGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFK 594

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
               T   ++  L   G   +A+K       +   +D   + ++ S L   +RF EA  +
Sbjct: 595 PDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDL 654

Query: 301 LKEMNKRDL 309
           L EM ++ L
Sbjct: 655 LAEMEEKKL 663



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+IG LC   K D+++  ++ + E G      T++ I+    R  ++E+A+ 
Sbjct: 524 IPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQ 583

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M +    PDL   N LL   C +G L     +      +    DA TY+ ++ G C
Sbjct: 584 FHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLC 643

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  R EEAF LL  M +        TY  ++ AL   G   +A +F+
Sbjct: 644 KEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFM 690



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 4/246 (1%)

Query: 70  ANTFNFI---TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126
            NTFN +      EN LS    L   +      FP   +Y+T++  LCK  K++EA  ++
Sbjct: 212 TNTFNILIYGCCIENKLSEAIGLIGKMKDFS-CFPDNVSYNTILDVLCKKGKLNEARDLL 270

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   G   +  TF+ ++S   +   ++EA  ++++M +  V PD+  YN L+   C  
Sbjct: 271 LDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKD 330

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G +     +  +ME  KL  D  TY+ L+ G        + F L+ +M   G      TY
Sbjct: 331 GKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTY 390

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             V+   ++ G    A   +          D   F +L +      R +EA  ++ EM++
Sbjct: 391 NVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSR 450

Query: 307 RDLKMG 312
           + LKM 
Sbjct: 451 KGLKMN 456



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 129/299 (43%), Gaps = 10/299 (3%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R   +SG  PD  T   ++ L+N       L     ++++ +R      + T N I +T 
Sbjct: 411 RKMEESGFSPDCVT---FNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTL 467

Query: 81  NSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
                L D  + L+   K   F  + +Y TLI    K  K  EA+++ D M E     S 
Sbjct: 468 CGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSI 527

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           IT++ ++  L    + +++   +  + E  + PD T YN ++  YC +G +        K
Sbjct: 528 ITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNK 587

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M ++    D  T + L+ G C  G +++A  L    +  G+++   TY  ++  L +   
Sbjct: 588 MVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDR 647

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRD 317
           + +A   +     + +  D   + ++ S L    R  EA    +E   R ++ G KL+D
Sbjct: 648 FEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEA----EEFMSRIVEQG-KLQD 701



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G  ++  TF+ ++       ++ EA GL+  MK+    PD  +YN +L   C KG L   
Sbjct: 207 GVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEA 266

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L  M+   L  +  T++ LV G C+ G ++EA  ++  M  +       TY  ++G 
Sbjct: 267 RDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGG 326

Query: 253 LLRLGYYAQAVKF 265
           L + G   +A + 
Sbjct: 327 LCKDGKIDEAFRL 339


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +K  P    Y TLI   C+++ ++ A+ +VD M   G   +AI ++PI+  L    R +E
Sbjct: 296 NKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALGEAGRFKE 355

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A G+ME    +   P ++ YN L+  YC  G+L+  S +LK M          TY+    
Sbjct: 356 ALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFR 415

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
              + G++EE+  L  +M++ G +    TY  ++  L        AV+       R   +
Sbjct: 416 FFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDM 475

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           D      L   L  + +F EA    + M  R +
Sbjct: 476 DLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGI 508



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 4/236 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   Y  L+      R +E    L+++  R+     A  +N I +         +    
Sbjct: 300 PTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGM 359

Query: 93  LAR---LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           + R   L++G P  S Y++L+   CK   +  A +++ +M   GF  +  T++      +
Sbjct: 360 MERFMVLEQG-PTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFS 418

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  ++EE+  L   M E   +PD   Y+ LL   C +  L     V  +M+      D  
Sbjct: 419 KYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLA 478

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           T   L+   C+  + EEAF     M+  G    Y T+  +    ++ G    A K 
Sbjct: 479 TSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMKRGLTKMASKL 534



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 89/211 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ LI    + +K+  A R+   M +     + +T+  ++    R + +E A  L
Sbjct: 265 PSIRAYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIEL 324

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+   + P+   YN ++ A    G      G++++    + G    TY++LV G C+
Sbjct: 325 VDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCK 384

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG +  A  +L+ M+  G +   +TY +      + G   +++             D   
Sbjct: 385 AGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLT 444

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           +  L   L   ER N A  +  EM  R   M
Sbjct: 445 YHLLLKMLCEEERLNLAVQVCNEMKARGFDM 475


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 2/212 (0%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    Y +L+  LCK   +D+AL +   M   G   + +T+  ++  L    +++ A
Sbjct: 214 KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 273

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             LM+ M      PD  +YN LL  YC  G +     + K+M  +    D  TY  LV G
Sbjct: 274 RLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRG 333

Query: 218 ACRAGRVEEAFVLLRRM-VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
            C A R+EEA  LL  M    G      TY+ V+    R   + +A +F+     R++  
Sbjct: 334 FCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAP 393

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM-NKR 307
           +   + SL   L    R + A  +LK M NKR
Sbjct: 394 NAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKR 425



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 113/267 (42%), Gaps = 37/267 (13%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SLL  L     + Q++ + R  T  G  P+  T   Y  L++       ++  R L+++ 
Sbjct: 224 SLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVT---YTTLIHGLCAAHKVDAARLLMDEM 280

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDE 121
              CC                                  P   +Y+ L+   C+L +I+E
Sbjct: 281 TATCCP---------------------------------PDTVSYNALLDGYCRLGRIEE 307

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR-VSPDLTAYNYLL 180
           A ++   MA        IT+  ++       R+EEA  L+E MK    + PD+  Y+ ++
Sbjct: 308 AKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVV 367

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             Y         +  +++M    +  +A TY +L+ G C+AGRV+ A  +L+ MV+    
Sbjct: 368 AGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVE 427

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVM 267
               T+  V+GAL RLG   +A K ++
Sbjct: 428 PSVGTFNSVIGALCRLGDMDEAWKLLV 454



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 17/226 (7%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           ++ R +   D   P    Y +++  LC+  K+D A  +V  M   G      TF  +++ 
Sbjct: 98  EILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITG 157

Query: 148 LTRGKRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
               ++++EA  L  E++      PD+  Y  L+  +C  GNL     +L  ME  K   
Sbjct: 158 WCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVP 217

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAV 263
           +  TY +L+ G C+AG +++A  L RRM   G     V Y+T  H + A     +   A 
Sbjct: 218 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCA----AHKVDAA 273

Query: 264 KFVM-----VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           + +M      C       DT  + +L      L R  EA  + KEM
Sbjct: 274 RLLMDEMTATC----CPPDTVSYNALLDGYCRLGRIEEAKQLFKEM 315



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 1/214 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  LC   K+D A  ++D M         ++++ +L    R  R+EEA  L
Sbjct: 252 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQL 311

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK-LGADARTYDALVLGAC 219
            + M      PD   Y  L+  +C    L     +L+ M+    +  D  TY  +V G  
Sbjct: 312 FKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYS 371

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           RA R  EA   ++ M+    +    TY+ ++  L + G    A++ +     + ++    
Sbjct: 372 RAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVG 431

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
            F S+   L  L   +EA  +L  M    L+ G 
Sbjct: 432 TFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGM 465



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 110/260 (42%), Gaps = 34/260 (13%)

Query: 2   SLLRKLPTKFLIPQSVLVT---RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLL 58
            L +++ TK  +P  +  T   R F  +     E      +++  AAG + D+ T   ++
Sbjct: 310 QLFKEMATKSCLPDRITYTCLVRGFCNASRL--EEARFLLENMKTAAGIDPDVVTYSIVV 367

Query: 59  NKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARLDKGF----------- 100
              +R   F  A  F       N   N     S++  LC+   R+D              
Sbjct: 368 AGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKA-GRVDHAMEVLKNMVNKRV 426

Query: 101 -PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    ++++IG LC+L  +DEA +++  MA  G     +T+  +L   +R  RME A+ 
Sbjct: 427 EPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYE 486

Query: 160 LMEVMKEI--------RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
           L EVM++          + P+  A++ L+   C    +     V++++   +        
Sbjct: 487 LFEVMRKKAKKSSSAANLVPE-QAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDC 545

Query: 212 DALVLGACRAGRVEEAFVLL 231
            A+V G  RAGR EEA  L+
Sbjct: 546 LAIVDGLLRAGRTEEAGKLI 565



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 73/139 (52%), Gaps = 9/139 (6%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  +I   CK  ++ +AL   + M E     +  T++ +++ L + +   +A+  
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAY-- 61

Query: 161 MEVMKEIR----VSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALV 215
            EV+KE+R    V+PDL  Y+ ++  +C +G +     +L++M   + +  D  TY ++V
Sbjct: 62  -EVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVV 120

Query: 216 LGACRAGRVEEAFVLLRRM 234
            G CR G+++ A  ++R M
Sbjct: 121 DGLCRDGKMDRACEMVREM 139



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
           +   P +  +  ++  +C    L       +KM E  +  + RTY+ +V G C+A    +
Sbjct: 1   MECQPTVVTWTIIIDGFCKANQLKQALACFEKMRE-FVAPNERTYNVVVNGLCKARLTSK 59

Query: 227 AFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFVMVCGGRD-IKLDTELFGS 283
           A+ +L+ M  DG+SV     TY+ V+    + G   +A + +     RD I  D   + S
Sbjct: 60  AYEVLKEM-RDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTS 118

Query: 284 LGSKLIGLERFNEANFILKEM 304
           +   L    + + A  +++EM
Sbjct: 119 VVDGLCRDGKMDRACEMVREM 139


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC   K D+A  ++  M + G  L  I F+ I+    +  R+ E+  L
Sbjct: 442 PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKL 501

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M  I V PD+  Y+ L+  YC  G +   + +L  M    +  D  TY+ L+ G C+
Sbjct: 502 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCK 561

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             R+E+A VL R M   G S    TY  ++  L +
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 2/254 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  ++ A    + ++    +L    ++       T+N I +   S     +    
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++  D   P    Y++L+  LCK  +  EA ++ D M + G      T+  +L     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + E  GL+++M    + P+   ++ L+ AY  +G +     V  KM ++ L  D  T
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  ++   C++GRVE+A     +M+D+  S     Y  ++ +L     + +A + ++   
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 271 GRDIKLDTELFGSL 284
            R I LDT  F S+
Sbjct: 472 DRGICLDTIFFNSI 485



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 1/218 (0%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    Y ++I  LCK + +D+A+ V+  M + G   +  T++ I+       + 
Sbjct: 226 LDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA G ++ M    V PD+  YN L+   C  G  T    +   M +  L  +  TY  L
Sbjct: 286 KEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    G + E   LL  MV +G    +  ++ ++ A  + G   QA+        + +
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
             DT  +G++   L    R  +A    ++M    L  G
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 2/187 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEA 157
            P   +Y+ L+  LC   +  EAL ++ +M + G       +++  +++   +   +++A
Sbjct: 159 IPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKA 218

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +G    M +  + P++  Y+ ++ A C    +     VL  M +  +  + RTY+++V G
Sbjct: 219 YGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHG 278

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C +G+ +EA   L++M  DG      TY  +M  L + G   +A K       R +K +
Sbjct: 279 YCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPE 338

Query: 278 TELFGSL 284
              +G+L
Sbjct: 339 ITTYGTL 345



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ D+M   G     IT+  ++      
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + + PD   YN L+  YC    +     + ++ME   +  D  TY
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G  +  R   A  L   + + G  +  STY  ++  L +     +A++       
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D++L+T  F  +   L+ + R +EA
Sbjct: 648 TDLQLETRTFNIMIGALLKVGRNDEA 673



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 89/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+D+A+ V   M + G     +T+  ++ +L +  R+E+A   
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M + R+SP    YN L+ + C          ++ +M +  +  D   +++++   C+
Sbjct: 432 FEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY+ ++      G   +A K +       +K D   
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +    + R  +A  + +EM
Sbjct: 552 YNTLINGYCKISRMEDALVLFREM 575



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I    K   +D+A      M + G   + +T+  I++ L + + M++A  +
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V P+   YN ++  YC  G      G LKKM  + +  D  TY++L+   C+
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
            GR  EA  +   M   G     +TY    G LL+ GY
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTY----GTLLQ-GY 349



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 15/241 (6%)

Query: 85  VLSDLCRTLARLDKGFP------RKS------AYDTLIGRLCKLKKIDEALRVV-DIMAE 131
           +L   C    RLD GF       +K       A+  ++  LC  K+  +A+ +V   M +
Sbjct: 96  ILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI--RVSPDLTAYNYLLTAYCFKGNL 189
            G   +  +++ +L  L    R +EA  L+++M +      PD+ +Y  ++  +  +G+L
Sbjct: 156 LGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
               G   +M +  +  +  TY +++   C+A  +++A  +L  MV +G      TY  +
Sbjct: 216 DKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSI 275

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +      G   +A+ F+       ++ D   + SL   L    R  EA  +   M KR L
Sbjct: 276 VHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGL 335

Query: 310 K 310
           K
Sbjct: 336 K 336



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 2/190 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C   K+DEA +++  M   G     +T++ +++   +  RME+A  L
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVL 571

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK-KMEEEKLGADARTYDALVLGAC 219
              M+   VSPD+  YN +L    F+   TA +  L   + E     +  TY+ ++ G C
Sbjct: 572 FREMESSGVSPDIITYNIILQGL-FQTRRTAAAKELYVGITESGTQLELSTYNIILHGLC 630

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +    +EA  + + +      +   T+  ++GALL++G   +A           +  D  
Sbjct: 631 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVR 690

Query: 280 LFGSLGSKLI 289
            +  +   LI
Sbjct: 691 TYSLMAENLI 700



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 1/163 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK    DEALR+   +      L   TF+ ++  L +  R +EA  L   
Sbjct: 620 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAA 679

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +    + PD+  Y+ +      +G L     +   MEE    A++R  +++V    + G 
Sbjct: 680 LSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGD 739

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  A   L  M+D+    L ++ A +   LL  G Y +  +F+
Sbjct: 740 ITRAGTYL-FMIDEKHFSLEASTASLFLDLLSGGKYQEYHRFL 781


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 118/279 (42%), Gaps = 2/279 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   Y+ +++    E DLE  R L  +           T+N + +    +  L ++   
Sbjct: 287 PSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 346

Query: 93  LARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              + D G  P    Y+ LI   CK +K+  A      M   G   + +T+  ++    +
Sbjct: 347 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 406

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              M+ A  L   M+   + P+   Y  L+ A C  GNLT    +L  M +  +  +  T
Sbjct: 407 EGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVT 466

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y AL+ G C+AGR+ EA  + R M+ DG S     Y  ++   ++      A+K +    
Sbjct: 467 YTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMT 526

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             +IK D  L+GS+        +  E   IL+EM  R +
Sbjct: 527 ECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGI 565



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +LI   CK   + EA ++++ M + G  L+ +T+  +L  L +  RM EA  +
Sbjct: 427 PNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEV 486

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  +SP+   Y  L+  Y     +     +LK+M E  +  D   Y +++ G C 
Sbjct: 487 FRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCS 546

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             ++EE  ++L  M   G S        ++ A  + G  + A+ F
Sbjct: 547 QRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNF 591



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  L+  LCK  ++ EA  V   M + G   +   +  ++    + +RME+A  +++ M
Sbjct: 466 TYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQM 525

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E  + PDL  Y  ++  +C +  L  T  +L++M+   + A+      ++    +AG+ 
Sbjct: 526 TECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKS 585

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +A    + M D G      TY  ++  L + G    AV +
Sbjct: 586 SDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDY 626



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 92/205 (44%), Gaps = 2/205 (0%)

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKI 119
            R+ C + +  F+ + +    L +L +     +R+   +  P+  + + L+ RL K    
Sbjct: 211 TRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNG 270

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
               +  + M   G   S  T++ ++  L +   +E +  L   M+E+ +SPD+  YN L
Sbjct: 271 QLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSL 330

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +  Y   G+L   + +  +M++     D  TY+ L+   C+  ++  AF     M ++G 
Sbjct: 331 IDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGL 390

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVK 264
                TY+ ++ A  + G    A+K
Sbjct: 391 KPNVVTYSTLIDAFCKEGMMQGAIK 415



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 118/293 (40%), Gaps = 33/293 (11%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           ++G  P+E T   Y  L++A     +L     LLN   +          N +T T    +
Sbjct: 422 RTGLLPNEFT---YTSLIDANCKAGNLTEAWKLLNDMLQ-----AGVKLNIVTYT----A 469

Query: 85  VLSDLCRT----------LARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           +L  LC+            + L  G  P +  Y  L+    K +++++A++++  M E  
Sbjct: 470 LLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECN 529

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
                I +  I+      +++EE   ++E MK   +S +      ++ AY   G  +   
Sbjct: 530 IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDAL 589

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
              ++M++  + A   TY  L+ G C+AG VE A     RM+  G     + Y  ++  L
Sbjct: 590 NFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGL 649

Query: 254 LRLGYYAQAVKFV--MVCGGR--DIKLDTELF------GSLGSKLIGLERFNE 296
            +      A K    M C G   DI   T L       G+L   L+ + R  E
Sbjct: 650 CKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTE 702



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 66/158 (41%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           T+I    K  K  +AL     M + G   + +T+  ++  L +   +E A      M  +
Sbjct: 574 TIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSL 633

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            + P++  Y  L+   C    + +   +  +M+   +  D   + AL+ G  + G ++EA
Sbjct: 634 GLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEA 693

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            VL+ RM +         Y  ++    + G   QA KF
Sbjct: 694 LVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKF 731



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 59/134 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  LI  LCK   ++ A+     M   G   +   +  ++  L +   +E A  L + M
Sbjct: 606 TYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEM 665

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +   ++PD+TA+  L+      GNL     ++ +M E  +  D   Y +LV G  + G +
Sbjct: 666 QCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGEL 725

Query: 225 EEAFVLLRRMVDDG 238
            +A      M++ G
Sbjct: 726 HQARKFFNEMIEKG 739


>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
 gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
          Length = 553

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 44/244 (18%)

Query: 38  YDDLVNAAGHERD----------LETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSVL 86
           Y+ L++A    RD          L+ +R LL +R    CF T A   +  +    +L+VL
Sbjct: 66  YNRLMSAHAGTRDGAGADRALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVL 125

Query: 87  SDL--------------------CRTLARLDKGF------------PRKSAYDTLIGRLC 114
             +                    CR L R D  +            P    Y TLI  LC
Sbjct: 126 DAMAADGVAPDAAACTVLVGVYACR-LRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLC 184

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
              ++ EAL V+D+M E G   +A T+ PI+     G R+ EA  L+  M     +P   
Sbjct: 185 SAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTA 244

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            YN L+ A C  G       +L++   +    D  TY + + G C+AGR++++F L+ +M
Sbjct: 245 TYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKM 304

Query: 235 VDDG 238
           + +G
Sbjct: 305 LSNG 308



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 1/162 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT-RGKRMEEAWG 159
           P  + + T+   L    +   AL V+D MA  G    A     ++ V   R +R + A+ 
Sbjct: 100 PDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYE 159

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M    V+PD+  Y+ L++  C  G +    GVL  M EE    +A TY  +V   C
Sbjct: 160 VVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYC 219

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             GR+ EA  LL  M+  G +   +TY  ++ AL ++G + +
Sbjct: 220 TGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEE 261



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 2/203 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  Y  +V+A      +   + LLN         +  T+N +      +    ++  
Sbjct: 205 QPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDA 264

Query: 92  TLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L     KG+ P    Y + +  LCK  +ID++  +VD M   G   S +T + +L  + 
Sbjct: 265 LLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVC 324

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R      A  L+E   E+    ++  YN ++   C +    +   +   M ++ +  ++ 
Sbjct: 325 RSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSW 384

Query: 210 TYDALVLGACRAGRVEEAFVLLR 232
           T++ +V   C+ GR+ +A  LLR
Sbjct: 385 TFNIVVHSLCKLGRLHKALFLLR 407



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 1/171 (0%)

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY-CFKGNLTATSGVL 196
           A  F  + + L+   R   A  +++ M    V+PD  A   L+  Y C      A   V+
Sbjct: 102 AACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVV 161

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           + M    +  D  TY  L+ G C AG+V EA  +L  M+++G      TY  ++ A    
Sbjct: 162 RWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTG 221

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           G   +A + +           T  +  L   L  +  F E + +L+E   +
Sbjct: 222 GRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAK 272


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC   K D+A  ++  M + G  L  I F+ I+    +  R+ E+  L
Sbjct: 442 PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKL 501

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M  I V PD+  Y+ L+  YC  G +   + +L  M    +  D  TY+ L+ G C+
Sbjct: 502 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCK 561

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             R+E+A VL R M   G S    TY  ++  L +
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 2/254 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  ++ A    + ++    +L    ++       T+N I +   S     +    
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++  D   P    Y++L+  LCK  +  EA ++ D M + G      T+  +L     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + E  GL+++M    + P+   ++ L+ AY  +G +     V  KM ++ L  D  T
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  ++   C++GRVE+A     +M+D+  S     Y  ++ +L     + +A + ++   
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 271 GRDIKLDTELFGSL 284
            R I LDT  F S+
Sbjct: 472 DRGICLDTIFFNSI 485



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 1/218 (0%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    Y ++I  LCK + +D+A+ V+  M + G   +  T++ I+       + 
Sbjct: 226 LDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA G ++ M    V PD+  YN L+   C  G  T    +   M +  L  +  TY  L
Sbjct: 286 KEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    G + E   LL  MV +G    +  ++ ++ A  + G   QA+        + +
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
             DT  +G++   L    R  +A    ++M    L  G
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 2/187 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEA 157
            P   +Y+ L+  LC   +  EAL ++ +M + G       +++  +++   +   +++A
Sbjct: 159 IPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKA 218

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +G    M +  + P++  Y+ ++ A C    +     VL  M +  +  + RTY+++V G
Sbjct: 219 YGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHG 278

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C +G+ +EA   L++M  DG      TY  +M  L + G   +A K       R +K +
Sbjct: 279 YCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPE 338

Query: 278 TELFGSL 284
              +G+L
Sbjct: 339 ITTYGTL 345



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ D+M   G     IT+  ++      
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + + PD   YN L+  YC    +     + ++ME   +  D  TY
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G  +  R   A  L   + + G  +  STY  ++  L +     +A++       
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D++L+T  F  +   L+ + R +EA
Sbjct: 648 TDLQLETRTFNIMIGALLKVGRNDEA 673



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 89/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+D+A+ V   M + G     +T+  ++ +L +  R+E+A   
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M + R+SP    YN L+ + C          ++ +M +  +  D   +++++   C+
Sbjct: 432 FEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY+ ++      G   +A K +       +K D   
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +    + R  +A  + +EM
Sbjct: 552 YNTLINGYCKISRMEDALVLFREM 575



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 70/150 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I    K   +D+A      M + G   + +T+  I++ L + + M++A  +
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V P+   YN ++  YC  G      G LKKM  + +  D  TY++L+   C+
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
            GR  EA  +   M   G     +TY  ++
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTYGTLL 346



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 98/255 (38%), Gaps = 38/255 (14%)

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           A  D+  P    Y  LIG  C   ++D     +  + + GF + AI F P+L  L   KR
Sbjct: 82  AGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKR 141

Query: 154 MEEAWGL-MEVMKEIRVSPDLTAYNYLLTAYC---------------------------- 184
             +A  + +  M ++   P++ +YN LL   C                            
Sbjct: 142 TSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVS 201

Query: 185 --------FK-GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
                   FK G+L    G   +M +  +  +  TY +++   C+A  +++A  +L  MV
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
            +G      TY  ++      G   +A+ F+       ++ D   + SL   L    R  
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321

Query: 296 EANFILKEMNKRDLK 310
           EA  +   M KR LK
Sbjct: 322 EARKMFDSMTKRGLK 336



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 2/190 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C   K+DEA +++  M   G     +T++ +++   +  RME+A  L
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVL 571

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK-KMEEEKLGADARTYDALVLGAC 219
              M+   VSPD+  YN +L    F+   TA +  L   + E     +  TY+ ++ G C
Sbjct: 572 FREMESSGVSPDIITYNIILQGL-FQTRRTAAAKELYVGITESGTQLELSTYNIILHGLC 630

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +    +EA  + + +      +   T+  ++GALL++G   +A           +  D  
Sbjct: 631 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVR 690

Query: 280 LFGSLGSKLI 289
            +  +   LI
Sbjct: 691 TYSLMAENLI 700



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 1/163 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK    DEALR+   +      L   TF+ ++  L +  R +EA  L   
Sbjct: 620 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAA 679

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +    + PD+  Y+ +      +G L     +   MEE    A++R  +++V    + G 
Sbjct: 680 LSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGD 739

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  A   L  M+D+    L ++ A +   LL  G Y +  +F+
Sbjct: 740 ITRAGTYL-FMIDEKHFSLEASTASLFLDLLSGGKYQEYHRFL 781


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++  LCK  K+DEA   ++ M   G     ++++ I+  L +  + +EA  +
Sbjct: 320 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQV 379

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  + PD   YN L+  +C +       G+LK M +  +  D  TY+ L+ G  +
Sbjct: 380 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 439

Query: 221 AGRVEEAFVLLRRMVDDGQSV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             R+ +A+ L+  M+ +G  V   +TY  ++  L + G   QA+  +    G  ++ +T 
Sbjct: 440 TNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTV 499

Query: 280 LFGSLGSKLIGLERFNEANFILKEMN 305
            +     +L    R +EA+ +L EM+
Sbjct: 500 TYNIFIDRLCKEGRLDEASSLLSEMD 525



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 35/243 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK  K D+A  ++  M + G     +TF+ I+  L +  + E A  L
Sbjct: 8   PDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + VM E    P    YN L++  C + N+     ++ +        D  TY  L  G C+
Sbjct: 68  LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCK 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL----------------GYYAQAVK 264
            GR++EAF L++ M  +G +    TY  ++  L +                 G+    V 
Sbjct: 128 RGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVT 187

Query: 265 FVMVCGG--RDIKLDTEL-----------------FGSLGSKLIGLERFNEANFILKEMN 305
           + ++  G  ++ +LD  L                 + +L   L    R +EA+ I KEM 
Sbjct: 188 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 247

Query: 306 KRD 308
            +D
Sbjct: 248 SKD 250



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 136/326 (41%), Gaps = 53/326 (16%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI------ 76
           F  SG  PD  T   Y  L +       ++    L+ + + + C     T+N +      
Sbjct: 106 FVSSGFVPDVVT---YSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCK 162

Query: 77  -TNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
            + TE +  +L  L      +  GF P    Y  ++  LCK  ++D+AL++V+ M + G 
Sbjct: 163 ASKTEKAYELLETL------VSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGC 216

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGL--------------------------------ME 162
             S IT+  ++  L R  R++EA  +                                 +
Sbjct: 217 TPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQK 276

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
           V+  IR +P +  YN L+  YC +G L     V + M       + +TY+ ++ G C+ G
Sbjct: 277 VVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHG 336

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTEL 280
           +V+EAF  L  M   G      +Y  ++  L +     +A + +  M+  G  I  D   
Sbjct: 337 KVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAG--IPPDAVT 394

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + +L ++    ERF++A  ILK M K
Sbjct: 395 YNTLMAQFCKEERFDDAVGILKNMIK 420



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 88/201 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK + +D A  +VD     GF    +T+  +   L +  R++EA+ L
Sbjct: 78  PSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFEL 137

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M     +P+L  YN L+   C          +L+ +       D  TY  +V G C+
Sbjct: 138 VKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCK 197

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+++A  ++  M+  G +    TY  +M  L R G   +A         +D   D   
Sbjct: 198 EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALA 257

Query: 281 FGSLGSKLIGLERFNEANFIL 301
           + SL +      R  EA  ++
Sbjct: 258 YVSLVNGYCKSSRTKEAQKVV 278



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 111/256 (43%), Gaps = 41/256 (16%)

Query: 16  SVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD-CCFNTANTFN 74
           +V + ++  K+G  PD  T   Y+ L++       L     L+++  R+ C  +   T+N
Sbjct: 411 AVGILKNMIKAGVDPDNVT---YNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYN 467

Query: 75  FI--------------------------TNTENSLSVLSDLCRTLARLDKGFPRKSAYDT 108
            I                           NT      +  LC+   RLD+     S  DT
Sbjct: 468 TIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKE-GRLDEASSLLSEMDT 526

Query: 109 L---------IGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           L         I  LCK +++D A ++  +++A  G  +++ TF+ ++   T+ KR++EA 
Sbjct: 527 LRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEAL 586

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+E+M +   SP +  YN ++T  C    +     +  +M    + A + +Y  L+ G 
Sbjct: 587 TLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGL 646

Query: 219 CRAGRVEEAFVLLRRM 234
           C  GR +EA  +L  M
Sbjct: 647 CGQGRGKEALQVLEEM 662



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 5/218 (2%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+T+I RLCK   + +AL ++D M   G   + +T++  +  L +  R++EA  L+  
Sbjct: 464 TTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSE 523

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK-LGADARTYDALVLGACRAG 222
           M  +R   D  +Y  ++   C    L   S + ++M   K L   + T++ L+    +  
Sbjct: 524 MDTLR---DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTK 580

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           R++EA  LL  MV  G S    TY  V+  L +L    +A +       R I   +  + 
Sbjct: 581 RLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYT 640

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDLKM-GFKLRDYY 319
            L   L G  R  EA  +L+EM   D ++   K R  Y
Sbjct: 641 VLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLY 678



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 1/146 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+ + CK ++ D+A+ ++  M + G     +T++ ++S L++  R+ +A+ L
Sbjct: 390 PDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYEL 449

Query: 161 M-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           M E+++   V    T YN ++   C +G L     ++  M    + A+  TY+  +   C
Sbjct: 450 MHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLC 509

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYST 245
           + GR++EA  LL  M      V Y+T
Sbjct: 510 KEGRLDEASSLLSEMDTLRDEVSYTT 535



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ LI    K K++DEAL ++++M + G   S IT++ +++ L +  ++++AW L + M 
Sbjct: 569 FNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMA 628

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +     +Y  L+   C +G       VL++M       D      L L     GR E
Sbjct: 629 VRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGE 688

Query: 226 EAFVLLRRM 234
           EA  LLRRM
Sbjct: 689 EAAELLRRM 697



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%)

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M E +V+PD+  YN L+   C        S +L +M +  +  D  T+++++ G C+AG+
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
            E A  LL  M +        TY  ++  L +     +A   V          D   +  
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 284 LGSKLIGLERFNEANFILKEMN 305
           L   L    R +EA  ++KEM+
Sbjct: 121 LADGLCKRGRIDEAFELVKEMS 142


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 113/231 (48%), Gaps = 5/231 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + +LS+L D+     R     P    Y+TL+    +  ++D A R+V +M +GG   + +
Sbjct: 167 KEALSILRDM-----RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLV 221

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF+ +++ + +  +ME+A  + + M    ++PD  +YN L+  YC  G       V  +M
Sbjct: 222 TFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEM 281

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            ++ +  D  T+ +L+   C+AG +E A  L+R+M + G  +   T+  ++    + G+ 
Sbjct: 282 TQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFL 341

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             A+  V       IK     + +L +    + R +EA  +L EM  + LK
Sbjct: 342 DDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLK 392



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 105/230 (45%), Gaps = 17/230 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
           +P    ++ +VN       +E  R + ++  R+       ++N +         +  +LS
Sbjct: 217 KPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALS 276

Query: 85  VLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           V +++ +      KG  P    + +LI  +CK   ++ A+ +V  M E G  ++ +TF  
Sbjct: 277 VFAEMTQ------KGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTA 330

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   +++A   +  M++ R+ P +  YN L+  YC  G +     +L +ME + 
Sbjct: 331 LIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKG 390

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVM 250
           L  D  TY  ++   C+      AF L ++M++ G    ++ YS+   V+
Sbjct: 391 LKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL 440



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+G  CK     EAL V   M + G     +TF  ++ V+ +   +E A  L
Sbjct: 253 PDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTL 312

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  +  +   +  L+  +C KG L      ++ M + ++      Y+AL+ G C 
Sbjct: 313 VRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCM 372

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR++EA  LL  M   G      TY+ ++ A  +      A +       + +  D   
Sbjct: 373 VGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAIT 432

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + SL   L   +R ++A+ + K M K  L+
Sbjct: 433 YSSLIRVLCEEKRLSDAHVLFKNMIKLGLQ 462



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 7/209 (3%)

Query: 83  LSVLSDLCRTLAR------LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           L  LSD   T AR      L  G  P    Y+ LI  LC      EAL ++  M   G G
Sbjct: 123 LLALSDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCG 182

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +T++ +++   R   ++ A  L+ +M +  + P+L  +N ++   C  G +     V
Sbjct: 183 PNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKV 242

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             +M  E L  D  +Y+ LV G C+AG   EA  +   M   G      T+  ++  + +
Sbjct: 243 FDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCK 302

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            G    AV  V     R ++++   F +L
Sbjct: 303 AGNLEWAVTLVRQMRERGLQMNEVTFTAL 331



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 69/153 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C + ++DEA  ++  M   G     +T+  I+S   +      A+ L
Sbjct: 358 PSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFEL 417

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  V PD   Y+ L+   C +  L+    + K M +  L  D  TY +L+ G C+
Sbjct: 418 NQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCK 477

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            G VE A  L  +MV  G      TY+ ++  L
Sbjct: 478 EGNVERALSLHDKMVKAGVLPDVVTYSVLINGL 510



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 62/134 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I   CK      A  +   M E G    AIT+  ++ VL   KR+ +A  L
Sbjct: 393 PDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVL 452

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M ++ + PD   Y  L+  +C +GN+     +  KM +  +  D  TY  L+ G  +
Sbjct: 453 FKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSK 512

Query: 221 AGRVEEAFVLLRRM 234
           + R  EA  LL ++
Sbjct: 513 SARAMEAQQLLFKL 526



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 77/160 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  LI   CK   +D+AL  V  M +     S + ++ +++      RM+EA  L+  M+
Sbjct: 328 FTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEME 387

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+  Y+ +++AYC   +  +   + ++M E+ +  DA TY +L+   C   R+ 
Sbjct: 388 AKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLS 447

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +A VL + M+  G      TY  ++    + G   +A+  
Sbjct: 448 DAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSL 487



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 3/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT-RGKRMEEAWG 159
           P   AY+ ++  L     +  A R  D M   G   +  T++ ++  L  RG R +EA  
Sbjct: 114 PSVLAYNAVLLALSD-ASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHR-KEALS 171

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M+     P++  YN L+ A+   G +     ++  M +  L  +  T++++V G C
Sbjct: 172 ILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMC 231

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +AG++E+A  +   M+ +G +    +Y  ++G   + G   +A+        + I  D  
Sbjct: 232 KAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVV 291

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            F SL   +        A  ++++M +R L+M
Sbjct: 292 TFTSLIHVMCKAGNLEWAVTLVRQMRERGLQM 323



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 15/153 (9%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +LI   CK   ++ AL + D M + G     +T+  +++ L++  R  EA  L
Sbjct: 463 PDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQL 522

Query: 161 MEVMKEIRVSPDLTAYNYL---------------LTAYCFKGNLTATSGVLKKMEEEKLG 205
           +  +      P  T Y+ L               L  +C KG +     V + M +    
Sbjct: 523 LFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWN 582

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            D   Y  L+ G CRAG V +A    ++M+  G
Sbjct: 583 LDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRG 615


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 83/164 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LCK + +D A  V+  M + G  L  +T+  I+  L + + ++ A G+
Sbjct: 197 PNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGV 256

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  V PD+  YN ++   C    +    GVL+ M ++ +  D  TY+ ++ G C+
Sbjct: 257 LQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCK 316

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           A  V+ A  +L+ M+D        TY  ++   L  G + + V+
Sbjct: 317 AQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVR 360



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 17/263 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P     + L+    +E+ +E    LL+  A D   N   T N +T      +++  LC+ 
Sbjct: 159 PNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNC--TPNVVTYN----TIIDGLCKA 212

Query: 93  LA----------RLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            A           +DKG       Y T+I  LCK + +D A  V+  M + G     +T+
Sbjct: 213 QAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTY 272

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + I+  L + + ++ A G+++ M +  V PD+  YN ++   C    +    GVL+ M +
Sbjct: 273 NTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMID 332

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           + +  D +TY+ L+ G    G  +E    L  M   G      TY+ ++  L + G   +
Sbjct: 333 KDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTE 392

Query: 262 AVKFVMVCGGRDIKLDTELFGSL 284
           A K       + IK +  ++G L
Sbjct: 393 ARKIFYCMIRKGIKPNVTIYGIL 415



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 99/210 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++L+  LC + + ++A  +   M + G   + + F+ I+  L    ++  A  L
Sbjct: 512 PNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRL 571

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+ + V P++ +YN L+  +C  G     + +L  M    L  D  +YD L+ G C+
Sbjct: 572 IDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCK 631

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR++ A+ L R M+  G +    TY+ ++  L     +++A +  +       + D   
Sbjct: 632 TGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYT 691

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  + + L      +EA  I + +  +DL+
Sbjct: 692 YNIILNGLCKTNCVDEAFKIFQSLCSKDLR 721



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 131/290 (45%), Gaps = 16/290 (5%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           +SG+   +     +D+L+  A     +    +LLN  AR  C +T         +E ++S
Sbjct: 24  RSGSLGIDDALKLFDELLPHA-RPASVRAFNHLLNVVARARCSST---------SELAVS 73

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           + + + R  +  +K  P    Y  L G  C+L +I+       ++ + G+ ++ +  + +
Sbjct: 74  LFNRMARACS--NKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQL 131

Query: 145 LSVLTRGKRMEEAWG-LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           L+ L   KR++EA   L+  M E    P++ + N LL   C +  +     +L  M E+ 
Sbjct: 132 LNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDG 191

Query: 204 LG---ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            G    +  TY+ ++ G C+A  V+ A  +L+ M+D G  +   TY+ ++  L +     
Sbjct: 192 GGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVD 251

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +A   +     + +K D   + ++   L   +  + A  +L+ M  + +K
Sbjct: 252 RAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVK 301



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 102/236 (43%), Gaps = 10/236 (4%)

Query: 19  VTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           V +     G  PD  T +   D L  A   +R    ++++++K  +        T+N + 
Sbjct: 291 VLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKP----DIQTYNCLI 346

Query: 78  NTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           +   S     ++ R L  +  +G  P    Y  L+  LCK  K  EA ++   M   G  
Sbjct: 347 HGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIK 406

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            +   +  +L        + +   L+++M    +SP+   +N +L AY  K  +     +
Sbjct: 407 PNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHI 466

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
             +M +  L  D  TY  L+   C+ GRV++A +   +M++DG    SV++++  +
Sbjct: 467 FSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVY 522



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 123/300 (41%), Gaps = 29/300 (9%)

Query: 19  VTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           V +     G  PD  T +   D L  A   +R    ++++++K  +        T+N   
Sbjct: 256 VLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKP----DVVTYN--- 308

Query: 78  NTENSLSVLSDLCRTLA----------RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVV 126
                 +++  LC+  A           +DK   P    Y+ LI       +  E +R +
Sbjct: 309 ------TIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRL 362

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           + M   G     +T+  +L  L +  +  EA  +   M    + P++T Y  LL  Y  +
Sbjct: 363 EEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAAR 422

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G +   + +L  M    +  +   ++ ++    +   ++EA  +  RM   G S    TY
Sbjct: 423 GAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTY 482

Query: 247 AHVMGALLRLGYYAQAV-KF-VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             ++ AL +LG    AV KF  M+  G  +  ++ +F SL   L  ++R+ +A  +  EM
Sbjct: 483 GILIDALCKLGRVDDAVLKFNQMINDG--VTPNSVVFNSLVYGLCTVDRWEKAEELFFEM 540



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 59/138 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  L+        I +   ++D+M   G   +   F+ +L    +   ++EA  +
Sbjct: 407 PNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHI 466

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  +SPD+  Y  L+ A C  G +        +M  + +  ++  +++LV G C 
Sbjct: 467 FSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCT 526

Query: 221 AGRVEEAFVLLRRMVDDG 238
             R E+A  L   M D G
Sbjct: 527 VDRWEKAEELFFEMWDQG 544



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 35/173 (20%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA--- 157
           P    ++ ++    K   IDEA+ +   M++ G     +T+  ++  L +  R+++A   
Sbjct: 442 PNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLK 501

Query: 158 --------------------WGLMEV------------MKEIRVSPDLTAYNYLLTAYCF 185
                               +GL  V            M +  V P++  +N ++   C 
Sbjct: 502 FNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCN 561

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +G +     ++  ME   +  +  +Y+ L+ G C AGR +EA  LL  MV  G
Sbjct: 562 EGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVG 614



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 11/234 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +YDTL+   CK  +ID A  +   M   G    A+T+  IL  L   +R  EA  L
Sbjct: 617 PDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKEL 676

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +     D+  YN +L   C    +     + + +  + L  +  T+  ++    +
Sbjct: 677 YLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFK 736

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR ++A  L   +   G      TY  +M  +++ G   +     +         D+ +
Sbjct: 737 GGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVM 796

Query: 281 FGSLGSKLIG----------LERFNEANFILKEMNKRDLKMGFKLRDYYEINVK 324
             ++   L+G          L + +E NF L E +   L +    R+ Y+ + K
Sbjct: 797 LNAIIRSLLGRGEIMRAGAYLSKIDEMNFSL-EASTTSLLISLFSREEYKNHAK 849


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 92/184 (50%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    + T++  LCK  KI EA  VVD+M   G   + +T++ ++        M+EA
Sbjct: 272 KIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEA 331

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + + M     +P++ +YN L+  YC    +   + + ++M +++L  +  TY+ L+ G
Sbjct: 332 VKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHG 391

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR+++A  L   MV  GQ    +TY  ++  L +  +  +A+  +    G ++  D
Sbjct: 392 LCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPD 451

Query: 278 TELF 281
            +++
Sbjct: 452 IQIY 455



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TLI   CK++++D+A  + + M +     + +T++ ++  L    R+++A  L
Sbjct: 345 PNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIAL 404

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PDL  Y  LL   C K +L     +LK +E   +  D + Y  ++ G CR
Sbjct: 405 FHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCR 464

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG +E A  +   +   G      TY  ++  L R G   +A K  M   G     D   
Sbjct: 465 AGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCT 524

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + ++   L+  +    A  +L+EM  R
Sbjct: 525 YNTITQGLLQNKEALRAIQLLQEMLAR 551



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 5/217 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +GF P    Y TLI  LCK+   + A+R++  M +G      + +  I+  L + +++
Sbjct: 164 IGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 223

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+ L   M    +SPD+  Y  L+ + C        + +L +M   K+  D   +  +
Sbjct: 224 TEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTV 283

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGR 272
           V   C+ G++ EA  ++  M+  G      TY  +M          +AVK    MV  G 
Sbjct: 284 VDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGY 343

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              + +  + +L +    ++R ++A ++ +EM +++L
Sbjct: 344 APNVIS--YNTLINGYCKIQRMDKATYLFEEMCQKEL 378



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 72/156 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TL+  LC + ++ +A+ +   M   G      T+  +L  L +   ++EA  
Sbjct: 379 IPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMA 438

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ ++   + PD+  Y  ++   C  G L A   +   +  + L  + RTY  ++ G C
Sbjct: 439 LLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLC 498

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           R G ++EA  L   M  +G S    TY  +   LL+
Sbjct: 499 RRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQ 534



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 103/247 (41%), Gaps = 2/247 (0%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           SF +       P++  ++ L+ +    +   TV  L N+           T N + N+  
Sbjct: 54  SFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFC 113

Query: 82  SLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
            L+        LA++ K G  P  + + TLI  LC   KI +AL + D M   GF  + +
Sbjct: 114 HLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVV 173

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +++ L +      A  L+  M++    PD+  Y  ++ + C    +T    +  KM
Sbjct: 174 TYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKM 233

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             + +  D  TY +L+   C     +    LL +M++         ++ V+ AL + G  
Sbjct: 234 VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKI 293

Query: 260 AQAVKFV 266
            +A   V
Sbjct: 294 TEAHDVV 300



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 93/216 (43%), Gaps = 2/216 (0%)

Query: 91  RTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           R L  +++G   P    Y ++I  LCK +++ EA  +   M   G      T+  ++  L
Sbjct: 193 RLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSL 252

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                 +    L+  M   ++ PD+  ++ ++ A C +G +T    V+  M    +  + 
Sbjct: 253 CNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNV 312

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+AL+ G C    ++EA  +   MV +G +    +Y  ++    ++    +A      
Sbjct: 313 VTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEE 372

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              +++  +T  + +L   L  + R  +A  +  EM
Sbjct: 373 MCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEM 408



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI   C L +   A  V+  + + G      TF  ++  L    ++ +A  L
Sbjct: 100 PDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHL 159

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P++  Y  L+   C  GN  A   +L+ ME+     D   Y +++   C+
Sbjct: 160 FDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 219

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +V EAF L  +MV  G S    TY  ++ +L  L  +      +       I  D  +
Sbjct: 220 DRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVI 279

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F ++   L    +  EA+ ++  M
Sbjct: 280 FSTVVDALCKEGKITEAHDVVDMM 303



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 81/186 (43%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+AL   + M       S + F+ +L+ + + K+    + L   M    + PD+   N 
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 107

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+ ++C          VL K+ +  L  D  T+  L+ G C  G++ +A  L  +M+ +G
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 167

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
                 TY  ++  L ++G    A++ +      + + D  ++ S+   L    +  EA 
Sbjct: 168 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAF 227

Query: 299 FILKEM 304
            +  +M
Sbjct: 228 NLFSKM 233



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 2/225 (0%)

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYD--TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + + L D   +  R+    P  S  D   L+  + K K+      + + M   G      
Sbjct: 44  NFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVY 103

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T + +++      R   A+ ++  + ++ + PD   +  L+   C +G +     +  KM
Sbjct: 104 TLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKM 163

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             E    +  TY  L+ G C+ G    A  LLR M           Y  ++ +L +    
Sbjct: 164 IGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 223

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +A        G+ I  D   + SL   L  L  +     +L +M
Sbjct: 224 TEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQM 268


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 125/324 (38%), Gaps = 59/324 (18%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
            FP  P   YY+ L+N    E  +   + + N+  +     T  +FN         ++++
Sbjct: 218 GFP--PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFN---------TLIN 266

Query: 88  DLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
            LC++   LD+GF            P    Y  LI  LCK  ++D A ++ D M + G  
Sbjct: 267 GLCKS-RNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLR 325

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT-------------- 181
            + ITF  ++    R +RM+ A      M  + V PDL  YN LL               
Sbjct: 326 PNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL 385

Query: 182 ---------------------AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                                 YC +G+L +   + K M EE +  D   + AL+ G CR
Sbjct: 386 VDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCR 445

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV +A   LR MV+ G     +TY  V+    + G      K +        K     
Sbjct: 446 DGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVIT 505

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L + L    +   AN +L+ M
Sbjct: 506 YNVLMNGLCKQGQMKNANMLLEAM 529



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 68/138 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI   CK   ++ A+ +   M E G  L  + F  ++S   R  R+ +A   
Sbjct: 396 PDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERT 455

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  + PD   Y  ++  YC KGN+     +LK+M+         TY+ L+ G C+
Sbjct: 456 LREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCK 515

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G+++ A +LL  M++ G
Sbjct: 516 QGQMKNANMLLEAMLNLG 533



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  +I   CK   +    +++  M   G     IT++ +++ L +  +M+ A  L
Sbjct: 466 PDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANML 525

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +E M  + V+PD   YN LL  +C  G       +LK   E+ L  D   Y +LV
Sbjct: 526 LEAMLNLGVTPDDITYNILLEGHCKNG---KAEDLLKLRNEKGLIVDYAYYTSLV 577



 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 36/210 (17%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ GFP K   Y+ LI + CK               EG    + + F+ I     RG R 
Sbjct: 215 LEYGFPPKVQYYNILINKFCK---------------EGSIRDAKLIFNEIRK---RGLR- 255

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
                           P   ++N L+   C   NL     + K MEE ++  D  TY  L
Sbjct: 256 ----------------PTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVL 299

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GR++ A  L   M   G      T+  ++    R      A+          +
Sbjct: 300 IHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGV 359

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
           K D  ++ +L + L  +   N+A  ++ EM
Sbjct: 360 KPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389



 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 20/100 (20%), Positives = 46/100 (46%)

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           W     + E    P +  YN L+  +C +G++     +  ++ +  L     +++ L+ G
Sbjct: 208 WTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLING 267

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            C++  ++E F L + M ++       TY+ ++  L + G
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEG 307


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TLI  LCK KK+ EA+ ++  M   G   +++T   ++  L +  RM+EA  L
Sbjct: 31  PDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMEL 90

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E MK+     D+  Y  L++ +C  GNL     +  +M  + + A+  TY  LV G CR
Sbjct: 91  LEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCR 150

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G+ +EA  +L  M + G      TY  ++  L + G    A+  +
Sbjct: 151 LGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL 196



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 2/162 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  L+  LC+L +  EA  V++ MAE G     +T+  ++  L +  R   A  L+ +M 
Sbjct: 141 YSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMV 200

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E    P    YN LL+  C +G +     +L+ M E+   AD  TY+ L+ G C  G+V+
Sbjct: 201 EKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVD 260

Query: 226 EAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKF 265
           EA  L   M D+   +  +  T+  ++G L + G   +AVK 
Sbjct: 261 EALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 302



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 87/198 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP      TL+  LCK  ++DEA+ +++ M + GF    + +  ++S       ++    
Sbjct: 65  FPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKE 124

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + M    +S ++  Y+ L+   C  G     + VL  M E  +  D  TY  L+ G C
Sbjct: 125 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLC 184

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GR   A  LL  MV+ G+     TY  ++  L + G    A K + +   +  K D  
Sbjct: 185 KDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVV 244

Query: 280 LFGSLGSKLIGLERFNEA 297
            + +L   L    + +EA
Sbjct: 245 TYNTLMKGLCDKGKVDEA 262



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 2/167 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK  +   A+ ++++M E G   S +T++ +LS L +   + +A+ +
Sbjct: 171 PDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKI 230

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM--EEEKLGADARTYDALVLGA 218
           + +M E     D+  YN L+   C KG +     +   M   E  L  +  T++ L+ G 
Sbjct: 231 LRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGL 290

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           C+ GR+ +A  + R+MV  G      TY  ++G  L+ G   +A++ 
Sbjct: 291 CKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 337



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 74/140 (52%), Gaps = 2/140 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCK   + +A +++ +M E G     +T++ ++  L    +++EA  L
Sbjct: 206 PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKL 265

Query: 161 MEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
              M   E  + P++  +N L+   C +G LT    + +KM ++    +  TY+ L+ G 
Sbjct: 266 FNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGC 325

Query: 219 CRAGRVEEAFVLLRRMVDDG 238
            +AG+++EA  L ++++D G
Sbjct: 326 LKAGKIKEAMELWKQVLDLG 345



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 1/190 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD GF P    Y  LI   CK++ ++ A  +   M   G   +   ++ +++ L +   +
Sbjct: 342 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL 401

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A  L + M      PD+ ++N ++      G+      +  KM E  L  DA T+  L
Sbjct: 402 EQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 461

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +    + G ++EA   L RMV  G +     Y  ++  L   G   + +  +     +  
Sbjct: 462 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 521

Query: 275 KLDTELFGSL 284
            LD ++  ++
Sbjct: 522 VLDRKIVSTI 531



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LIG LCK  ++ +A+++   M + G   + +T++ +L    +  +++EA  L
Sbjct: 278 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 337

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + + ++   P+   Y+ L+  +C    L    G+  +M    L      Y+ L+   C+
Sbjct: 338 WKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK 397

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +E+A  L + M +        ++  ++   L+ G +    +  M      ++ D   
Sbjct: 398 EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALT 457

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F +L ++L  L   +EA   L+ M
Sbjct: 458 FSTLINRLSKLGELDEAKSALERM 481


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 84/168 (50%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K FP    Y  LI   C +  + EA R+ D+M E G   + +T + ++    R     +A
Sbjct: 428 KIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKA 487

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
              +  M    V+PD  +YN L+  +  + N+      + KME+E L  D  TY+ ++ G
Sbjct: 488 DEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNG 547

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            CR GR++EA ++LR+M++ G +   STY  ++   +      +A +F
Sbjct: 548 FCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRF 595



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 92/205 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY+T++  LCK K + +A ++ D M E G      TF  ++    +   M +A  L   M
Sbjct: 330 AYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTM 389

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  + PD+ AYN L+  +C  G +   S +   M   K+  +  TY  L+   C  G V
Sbjct: 390 TQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHV 449

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EAF L   M++ G      T   V+    R G  ++A +F+     + +  D   + +L
Sbjct: 450 SEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTL 509

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            +  +  +  ++A   + +M K  L
Sbjct: 510 INGFVREDNMDKAFLWINKMEKEGL 534



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 6/203 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +D LI    + +K+ E      I+   G+ +S    + +L  L +   +E AW   EV 
Sbjct: 50  VFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAW---EVH 106

Query: 165 KEI-RVSPDLTAY--NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           +E+ R   +L  Y  N ++ A C  G        L +ME   + AD  TY+ L+   CR 
Sbjct: 107 REVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCRE 166

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELF 281
           G +EEAF ++  M D G      TY  ++  L + G YA+A   ++      +  DT  +
Sbjct: 167 GLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTY 226

Query: 282 GSLGSKLIGLERFNEANFILKEM 304
            +L  +    + F+EA  I  EM
Sbjct: 227 NTLLVESCRRDNFSEAKEIFGEM 249



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   C+   + EAL++ D M E G  L  I ++ IL+ L + K + +A  L
Sbjct: 291 PDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKL 350

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E    PD   +  L+  +C  GN+T    +   M +  +  D   Y+ L+ G C+
Sbjct: 351 FDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCK 410

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G +E+A  L   M+       + TY  ++ A   +G+ ++A +   V   + IK
Sbjct: 411 VGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIK 465



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 3/147 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TLIG  C+   ++EA  +++ MA+ G   S  T++ I++ L +  R   A G++  M
Sbjct: 155 TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 214

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
             I +SPD T YN LL   C + N +    +  +M  + +  D  ++ +L+    R   +
Sbjct: 215 LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHL 274

Query: 225 EEAFVLLRRMVDDG---QSVLYSTYAH 248
           ++A V  R M   G    +V+Y+   H
Sbjct: 275 DQALVYFRDMKKFGLVPDNVIYTVLMH 301



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 4/219 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+TLI   CK+ ++++A  + D M       + IT+  +++       + EA+ L
Sbjct: 396 PDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRL 455

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +VM E  + P L   N ++  YC  G+ +     L +M  + +  D  +Y+ L+ G  R
Sbjct: 456 WDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVR 515

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +++AF+ + +M  +G      TY  VM    R G   +A   +     + I  D   
Sbjct: 516 EDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRST 575

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYY 319
           + +L +  +  +  NEA     EM    L+ GF   D +
Sbjct: 576 YTALINGHVTQDNLNEAFRFHDEM----LQRGFAPDDVF 610



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 23/270 (8%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           +G + D  T   Y+ L+ A   E  LE    ++N  A      +  T+N I N       
Sbjct: 147 NGIYADMVT---YNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIIN------- 196

Query: 86  LSDLCRT----------LARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
              LC+           +  L+ G  P  + Y+TL+   C+     EA  +   M   G 
Sbjct: 197 --GLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGV 254

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
               ++F  +++V +R + +++A      MK+  + PD   Y  L+  YC  GN+     
Sbjct: 255 VPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALK 314

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +  +M E+    D   Y+ ++ G C+   + +A  L   MV+ G    + T+  ++    
Sbjct: 315 IRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHC 374

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           + G   +A+        R+IK D   + +L
Sbjct: 375 QDGNMTKALSLFGTMTQRNIKPDIVAYNTL 404



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 79/159 (49%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           +A ++L+G L K+  ++ A  V   +   G  L+  T + +++ L +  + ++    +  
Sbjct: 84  NACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSE 143

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+   +  D+  YN L+ AYC +G L     ++  M ++ L     TY+A++ G C+ GR
Sbjct: 144 MEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGR 203

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              A  +L  M++ G S   +TY  ++    R   +++A
Sbjct: 204 YARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEA 242


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC   K D+A  ++  M + G  L  I F+ I+    +  R+ E+  L
Sbjct: 442 PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKL 501

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M  I V PD+  Y+ L+  YC  G +   + +L  M    +  D  TY+ L+ G C+
Sbjct: 502 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCK 561

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             R+E+A VL R M   G S    TY  ++  L +
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 2/254 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  ++ A    + ++    +L    ++       T+N I +   S     +    
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++  D   P    Y++L+  LCK  +  EA ++ D M + G      T+  +L     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + E  GL+++M    + P+   ++ L+ AY  +G +     V  KM ++ L  D  T
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  ++   C++GRVE+A     +M+D+  S     Y  ++ +L     + +A + ++   
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 271 GRDIKLDTELFGSL 284
            R I LDT  F S+
Sbjct: 472 DRGICLDTIFFNSI 485



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 1/218 (0%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    Y ++I  LCK + +D+A+ V+  M + G   +  T++ I+       + 
Sbjct: 226 LDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA G ++ M    V PD+  YN L+   C  G  T    +   M +  L  +  TY  L
Sbjct: 286 KEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    G + E   LL  MV +G    +  ++ ++ A  + G   QA+        + +
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
             DT  +G++   L    R  +A    ++M    L  G
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 2/187 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEA 157
            P   +Y+ L+  LC   +  EAL ++ +M + G       +++  +++   +   +++A
Sbjct: 159 IPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKA 218

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +G    M +  + P++  Y+ ++ A C    +     VL  M +  +  + RTY+++V G
Sbjct: 219 YGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHG 278

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C +G+ +EA   L++M  DG      TY  +M  L + G   +A K       R +K +
Sbjct: 279 YCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPE 338

Query: 278 TELFGSL 284
              +G+L
Sbjct: 339 ITTYGTL 345



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ D+M   G     IT+  ++      
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + + PD   YN L+  YC    +     + ++ME   +  D  TY
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G  +  R   A  L   + + G  +  STY  ++  L +     +A++       
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D++L+T  F  +   L+ + R +EA
Sbjct: 648 TDLQLETRTFNIMIGALLKVGRNDEA 673



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 89/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+D+A+ V   M + G     +T+  ++ +L +  R+E+A   
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M + R+SP    YN L+ + C          ++ +M +  +  D   +++++   C+
Sbjct: 432 FEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY+ ++      G   +A K +       +K D   
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +    + R  +A  + +EM
Sbjct: 552 YNTLINGYCKISRMEDALVLFREM 575



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I    K   +D+A      M + G   + +T+  I++ L + + M++A  +
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V P+   YN ++  YC  G      G LKKM  + +  D  TY++L+   C+
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
            GR  EA  +   M   G     +TY    G LL+ GY
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTY----GTLLQ-GY 349



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 98/255 (38%), Gaps = 38/255 (14%)

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           A  D+  P    Y  LIG  C   ++D     +  + + GF + AI F P+L  L   KR
Sbjct: 82  AGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKR 141

Query: 154 MEEAWGL-MEVMKEIRVSPDLTAYNYLLTAYC---------------------------- 184
             +A  + +  M ++   P++ +YN LL   C                            
Sbjct: 142 TSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVS 201

Query: 185 --------FK-GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
                   FK G+L    G   +M +  +  +  TY +++   C+A  +++A  +L  MV
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
            +G      TY  ++      G   +A+ F+       ++ D   + SL   L    R  
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321

Query: 296 EANFILKEMNKRDLK 310
           EA  +   M KR LK
Sbjct: 322 EARKMFDSMTKRGLK 336



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 2/190 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C   K+DEA +++  M   G     +T++ +++   +  RME+A  L
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVL 571

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL-KKMEEEKLGADARTYDALVLGAC 219
              M+   VSPD+  YN +L    F+   TA +  L   + E     +  TY+ ++ G C
Sbjct: 572 FREMESSGVSPDIITYNIILQGL-FQTRRTAAAKELYVGITESGTQLELSTYNIILHGLC 630

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +    +EA  + + +      +   T+  ++GALL++G   +A           +  D  
Sbjct: 631 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVR 690

Query: 280 LFGSLGSKLI 289
            +  +   LI
Sbjct: 691 TYSLMAENLI 700



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 1/158 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK    DEALR+   +      L   TF+ ++  L +  R +EA  L   
Sbjct: 620 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAA 679

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +    + PD+  Y+ +      +G L     +   MEE    A++R  +++V    + G 
Sbjct: 680 LSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGD 739

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           +  A   L  M+D+    L ++ A +   LL  G Y +
Sbjct: 740 ITRAGTYL-FMIDEKHFSLEASTASLFLDLLSGGKYQE 776


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 95/209 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  + +  LI  LCK   + +AL + D M + G    A T+  ++S L R KR+++A+ 
Sbjct: 193 LPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYR 252

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + MK+  V PD    N LL  +C    +     +L+  E++    D R Y  L+ G  
Sbjct: 253 LFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLF 312

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           RA R E+  +L R+M++D        Y  +M  L   G    A++ +       +  DT 
Sbjct: 313 RAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTV 372

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRD 308
            +  L      +   +EA  +  E+++ D
Sbjct: 373 CYNVLIKGFCDMGLLSEARSLQLEISRHD 401



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 105/246 (42%), Gaps = 2/246 (0%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR--KSAYDTLIGRLCKLKKIDEALR 124
           F    + + IT+   + + L   C+TL  L  G  +    A+  LI    K+   D+A+ 
Sbjct: 88  FRAWESCDLITDLLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAME 147

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
               M +        T++ IL VL +   +  A  +   M ++   P++  ++ L+   C
Sbjct: 148 TFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLC 207

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
             GN+     +  +M +  +  DA TY  ++ G CR+ RV++A+ L  +M D G    + 
Sbjct: 208 KSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFV 267

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           T   ++     L    +A   + +       LD   +  L   L   +R+ +   + ++M
Sbjct: 268 TCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKM 327

Query: 305 NKRDLK 310
            + ++K
Sbjct: 328 IEDNVK 333



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 103/247 (41%), Gaps = 18/247 (7%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           T+SG  PD   +  Y+ L+        L   R L  + +R  CF    T++ + +     
Sbjct: 363 TESGVVPD---TVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRN 419

Query: 84  SVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG--------- 132
            +  D       ++K   +P    +++LI  LCK  ++++A  +   M  G         
Sbjct: 420 GLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRL 479

Query: 133 ----GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
                  L + +   ++  L     + +A+ ++  + +   +P +  YN L+  +C  GN
Sbjct: 480 SQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGN 539

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                 + ++M+ + L  D  TY  L+ G  R  R E+A+ +  +M  +G +   + Y  
Sbjct: 540 FNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRT 599

Query: 249 VMGALLR 255
           +M  + R
Sbjct: 600 MMTWMCR 606



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 13/219 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C +  + EA  +   ++      +  T+  ++S + R     +A  +
Sbjct: 369 PDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEI 428

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA-------------D 207
              M+++   P    +N L+   C  G L     +  KME  +  +             D
Sbjct: 429 FNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLD 488

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           + +   +V   C +G + +A+ +L ++ D G +    TY  ++    +LG +  A K   
Sbjct: 489 SASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFR 548

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
               + +  DT  +G+L + L+  +R  +A  +  +M K
Sbjct: 549 EMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEK 587



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 48/225 (21%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           V+S LCR+  R+D  +            P     + L+   C L ++DEA  ++ +  + 
Sbjct: 237 VISGLCRS-KRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKD 295

Query: 133 GFGLSAITFHPILSVLTRGKRMEE-----------------------------------A 157
           G+ L    +  ++  L R KR E+                                   A
Sbjct: 296 GYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDA 355

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M E  V PD   YN L+  +C  G L+    +  ++       + +TY  L+ G
Sbjct: 356 LELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISG 415

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            CR G   +A  +   M   G      T+  ++  L + G   +A
Sbjct: 416 MCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKA 460



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 62/134 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  ++  L +  K+ +AL +++ M E G     + ++ ++        + EA  L
Sbjct: 334 PDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSL 393

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +      P++  Y+ L++  C  G       +  +ME+      A T+++L+ G C+
Sbjct: 394 QLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCK 453

Query: 221 AGRVEEAFVLLRRM 234
            G++E+A +L  +M
Sbjct: 454 TGQLEKAHLLFYKM 467



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 36/231 (15%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           ++   FP+  T +     +   G  RD + +    N+  +  C+ +A TFN         
Sbjct: 398 SRHDCFPNVKTYSILISGMCRNGLTRDAQEI---FNEMEKLGCYPSAVTFN--------- 445

Query: 84  SVLSDLCRT---------------------LARLDKGFPR---KSAYDTLIGRLCKLKKI 119
           S++  LC+T                       RL +G       ++   ++ +LC    I
Sbjct: 446 SLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLI 505

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            +A R++  +A+ G      T++ +++   +      A+ L   M+   +SPD   Y  L
Sbjct: 506 HKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTL 565

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           +              V  +ME+     DA  Y  ++   CR   +  AF L
Sbjct: 566 INGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSL 616


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 23/262 (8%)

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP----------RKSA----YDT 108
           RDC   T N +++        S++  LC+ + ++D GF           ++SA    Y+ 
Sbjct: 220 RDCKTVTPNGYSYT-------SMIKALCK-VGKVDDGFKILSDLIHAGLQQSAGAVPYNL 271

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  LCK  ++DEA+R+   M E     S +TF  +++ L R  R  E   L+  M+ + 
Sbjct: 272 LMDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLG 331

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           ++P+    N L+  +C KG+ T    +  +M  +++ + A TY+ +    C+ G +E A 
Sbjct: 332 ITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAE 391

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALL-RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
            +L  M+  G ++    +  V+  LL R G     V+ +     R +K +  L  +   +
Sbjct: 392 RILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQ 451

Query: 288 LIGLERFNEANFILKEMNKRDL 309
           L    R  EA  I  +M ++ L
Sbjct: 452 LCQGRRHQEAVGIWLKMLEKGL 473



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 11/267 (4%)

Query: 49  RDLETVRYLLNKRARDCCFNTANTFNFI------TNTENSLSVLSDLCRTLARLDKGFPR 102
           R  E V   L    +  C N A +   I       N + +  VL  +      LD     
Sbjct: 457 RHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDN---- 512

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
              Y+ +I   CK  KI+EAL++ D M   GF   A  F+ I+       +MEEA  L+ 
Sbjct: 513 -ITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLG 571

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            MK   V PD+ +Y  ++  YC   ++   +  L ++    L  +A  Y+AL+ G  R G
Sbjct: 572 QMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNG 631

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
            +  A  +L  M   G      TY  +M  +   G   +A           I++    + 
Sbjct: 632 NISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYT 691

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDL 309
            +   L  + + +EA    +EM  R +
Sbjct: 692 IMIQGLCKIGKMDEAMNYFEEMRSRSI 718



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 13/251 (5%)

Query: 68  NTANTFNFITNT-------ENSLSVLSDLCRTLARLDKGFPRKSAYDTLI-GRLCKLKKI 119
           +TA T+N I          E +  +L ++  T   +  G      +++++ G L +  ++
Sbjct: 369 STAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGL-----FNSVVAGLLQRTGRL 423

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +  +R++  M + G   +          L +G+R +EA G+   M E  +  ++   N L
Sbjct: 424 ESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNAL 483

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C   N+   + VL+ M  + +  D  TY+ ++ G C+  ++EEA  L   M+  G 
Sbjct: 484 IHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGF 543

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
                 +  ++ A   LG   +A+  +       ++ D   +G++       +   +AN 
Sbjct: 544 KPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANE 603

Query: 300 ILKEMNKRDLK 310
            L E+    LK
Sbjct: 604 YLNELMACGLK 614



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK-LGADARTYDALVLGACR 220
            V+   R SP +   N LL A    GNL AT  V  +M + K +  +  +Y +++   C+
Sbjct: 182 HVLSSRRASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALCK 241

Query: 221 AGRVEEAFVLLRRMVDDG--QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            G+V++ F +L  ++  G  QS     Y  +M AL + G   +A++         +    
Sbjct: 242 VGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRVAPSM 301

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
             FG L + L   +RF E   +L+EM
Sbjct: 302 VTFGILINGLKRSDRFGEVGALLREM 327



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LIG   +   I  A+ V+D M   G   + +T+  ++  +     ++EA  +
Sbjct: 615 PNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTM 674

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E  ++  +   +  Y  ++   C  G +       ++M    +  +  TY  L+   C+
Sbjct: 675 FEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCK 734

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYST 245
           +G  EEA  L   MV  G    +V Y+T
Sbjct: 735 SGNNEEASKLFDEMVSSGIVPDNVSYNT 762



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 57/128 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+  +C    +DEA  + +   +    +  + +  ++  L +  +M+EA   
Sbjct: 650 PTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNY 709

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M+   + P+   Y  L+ AYC  GN    S +  +M    +  D  +Y+ LV G  +
Sbjct: 710 FEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQ 769

Query: 221 AGRVEEAF 228
              +++A 
Sbjct: 770 VDSLDKAI 777


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TLI  LCK KK+ EA+ ++  M   G   +++T   ++  L +  RM+EA  L
Sbjct: 177 PDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMEL 236

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E MK+     D+  Y  L++ +C  GNL     +  +M  + + A+  TY  LV G CR
Sbjct: 237 LEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCR 296

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G+ +EA  +L  M + G      TY  ++  L + G    A+  +
Sbjct: 297 LGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL 342



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 2/162 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  L+  LC+L +  EA  V++ MAE G     +T+  ++  L +  R   A  L+ +M 
Sbjct: 287 YSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMV 346

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E    P    YN LL+  C +G +     +L+ M E+   AD  TY+ L+ G C  G+V+
Sbjct: 347 EKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVD 406

Query: 226 EAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKF 265
           EA  L   M D+   +  +  T+  ++G L + G   +AVK 
Sbjct: 407 EALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 448



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 87/198 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP      TL+  LCK  ++DEA+ +++ M + GF    + +  ++S       ++    
Sbjct: 211 FPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKE 270

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + M    +S ++  Y+ L+   C  G     + VL  M E  +  D  TY  L+ G C
Sbjct: 271 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLC 330

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GR   A  LL  MV+ G+     TY  ++  L + G    A K + +   +  K D  
Sbjct: 331 KDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVV 390

Query: 280 LFGSLGSKLIGLERFNEA 297
            + +L   L    + +EA
Sbjct: 391 TYNTLMKGLCDKGKVDEA 408



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 2/167 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK  +   A+ ++++M E G   S +T++ +LS L +   + +A+ +
Sbjct: 317 PDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKI 376

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM--EEEKLGADARTYDALVLGA 218
           + +M E     D+  YN L+   C KG +     +   M   E  L  +  T++ L+ G 
Sbjct: 377 LRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGL 436

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           C+ GR+ +A  + R+MV  G      TY  ++G  L+ G   +A++ 
Sbjct: 437 CKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 483



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 87/210 (41%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +   LI      +K      VV ++ + GF ++    + +L  L R   + EA G
Sbjct: 106 LPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMG 165

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M    VSPD+ +YN L+   C    L    G+L +ME      ++ T   L+ G C
Sbjct: 166 LIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLC 225

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GR++EA  LL  M   G       Y  ++      G   +  +      G+ I  +  
Sbjct: 226 KDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVV 285

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +  L   L  L ++ EAN +L  M +  +
Sbjct: 286 TYSCLVHGLCRLGQWKEANTVLNAMAEHGI 315



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 74/140 (52%), Gaps = 2/140 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCK   + +A +++ +M E G     +T++ ++  L    +++EA  L
Sbjct: 352 PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKL 411

Query: 161 MEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
              M   E  + P++  +N L+   C +G LT    + +KM ++    +  TY+ L+ G 
Sbjct: 412 FNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGC 471

Query: 219 CRAGRVEEAFVLLRRMVDDG 238
            +AG+++EA  L ++++D G
Sbjct: 472 LKAGKIKEAMELWKQVLDLG 491



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 1/190 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD GF P    Y  LI   CK++ ++ A  +   M   G   +   ++ +++ L +   +
Sbjct: 488 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL 547

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A  L + M      PD+ ++N ++      G+      +  KM E  L  DA T+  L
Sbjct: 548 EQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 607

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +    + G ++EA   L RMV  G +     Y  ++  L   G   + +  +     +  
Sbjct: 608 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 667

Query: 275 KLDTELFGSL 284
            LD ++  ++
Sbjct: 668 VLDRKIVSTI 677



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LIG LCK  ++ +A+++   M + G   + +T++ +L    +  +++EA  L
Sbjct: 424 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 483

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + + ++   P+   Y+ L+  +C    L    G+  +M    L      Y+ L+   C+
Sbjct: 484 WKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK 543

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +E+A  L + M +        ++  ++   L+ G +    +  M      ++ D   
Sbjct: 544 EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALT 603

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F +L ++L  L   +EA   L+ M
Sbjct: 604 FSTLINRLSKLGELDEAKSALERM 627


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 4/170 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  +C    + EAL+V++ +   G    A+T+ P+L  L   +R EEA  L
Sbjct: 228 PDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKL 287

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M     +PD   +N ++T+ C KG +   + VL +M E     D  TY +++ G C+
Sbjct: 288 LTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCK 347

Query: 221 AGRVEEAFVLLR----RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             RV+EA  LL+     MV         T+  ++ +L + G + +A+K V
Sbjct: 348 ERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVV 397



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC    + +AL V D M   G   S +T+  +L    +    ++A  L
Sbjct: 158 PDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVL 217

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+     PD+  YN L+ A C +G++     VL  +       DA TY  ++   C 
Sbjct: 218 LDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCS 277

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           + R EEA  LL +M  +  +    T+  V+ +L + G+  +A K +          D   
Sbjct: 278 SERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIIT 337

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + S+   L    R +EA  +LKE+
Sbjct: 338 YSSIMDGLCKERRVDEAIKLLKEL 361



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 1/164 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS-VLTRGKRMEEAW 158
            P +  ++T+I  LC+    D A++VVD M+E G      T++ I+   L +  + EEA 
Sbjct: 371 IPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEAL 430

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+ +M    + PD T Y  L      +  +    G+ ++++   L  D   Y+A++LG 
Sbjct: 431 DLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGL 490

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           C+  R + A      MV +G     STY  ++  +   G+  +A
Sbjct: 491 CKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEA 534



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 6/208 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI +LC   ++ +A RVV+ +   G   + IT++ +++   R   ++ A  +
Sbjct: 94  PAVIPCNILIKKLCADGRVADAERVVEAL---GPSATIITYNTMVNGYCRAGNIDAARRM 150

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++    +  +PD   YN L+ A C +G +     V   M          TY  L+   C+
Sbjct: 151 ID---SVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCK 207

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
               ++A VLL  M   G      TY  ++ A+   G   +A+K +        K D   
Sbjct: 208 ESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVT 267

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           +  +   L   ER+ EA+ +L +M   D
Sbjct: 268 YTPVLKSLCSSERWEEADKLLTKMFSND 295



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 3/202 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T++   C+   ID A R++D +    F     T++P++  L     + +A  + + M 
Sbjct: 131 YNTMVNGYCRAGNIDAARRMIDSVP---FAPDTFTYNPLIRALCVRGCVLDALAVFDDML 187

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               SP +  Y+ LL A C +        +L +M  +    D  TY+ L+   C  G V 
Sbjct: 188 HRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVG 247

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA  +L  +   G      TY  V+ +L     + +A K +      D   D   F ++ 
Sbjct: 248 EALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVI 307

Query: 286 SKLIGLERFNEANFILKEMNKR 307
           + L        A  +L +M++ 
Sbjct: 308 TSLCQKGFVGRATKVLAQMSEH 329



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 99/265 (37%), Gaps = 42/265 (15%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   Y  L++A   E   +    LL++     C     T+N + N   S   + +  + 
Sbjct: 193 PSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKV 252

Query: 93  LARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  L      P    Y  ++  LC  ++ +EA +++  M         +TF+ +++ L +
Sbjct: 253 LNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQ 312

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAY---------------------------------- 176
              +  A  ++  M E   +PD+  Y                                  
Sbjct: 313 KGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIP 372

Query: 177 -----NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG-ACRAGRVEEAFVL 230
                N ++T+ C KG       V+ +M E     D  TY+ +V G  C++ + EEA  L
Sbjct: 373 DQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDL 432

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLR 255
           L  MV +G     +TY  +   L R
Sbjct: 433 LNLMVSNGLCPDTTTYKSLAFGLSR 457


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 5/217 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +GF P    Y TLI  LCK+     A+R++  M +     +   ++ I+  L + +++
Sbjct: 158 IGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQV 217

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+ L   M    +SPD+  YN L+ A C        + +L +M + K+  D  +++ +
Sbjct: 218 TEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGR 272
           V   C+ G+V EA  ++ +M+  G      TY  +M     L    +AVK    MVC G 
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG- 336

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               +   + +L +    ++R ++A ++  EM +++L
Sbjct: 337 -CMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQEL 372



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P   +++T++  LCK  K+ EA  VVD M + G   + +T+  ++        M+EA
Sbjct: 266 KIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEA 325

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + + M      P++ +YN L+  YC    +     +  +M  ++L  D  TY  L+ G
Sbjct: 326 VKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHG 385

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C   R+++A  L   MV   Q     TY  ++  L +  Y A+A+  +    G ++  D
Sbjct: 386 LCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPD 445

Query: 278 TEL 280
            ++
Sbjct: 446 IQV 448



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 67  FNT-ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
           +NT  N +  I   + ++ +  ++CR      +  P    Y TLI  LC ++++ +A+ +
Sbjct: 344 YNTLINGYCKIQRIDKAMYLFGEMCR-----QELIPDTVTYSTLIHGLCHVERLQDAIAL 398

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
              M       + +T+  +L  L + + + EA  L++ ++   + PD+   N  +   C 
Sbjct: 399 FHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCR 458

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G L A   +   +  + L  D  TY  ++ G CR G ++EA  L R M ++G ++    
Sbjct: 459 AGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCI 518

Query: 246 YAHVMGALLRLGYYAQAVKFV 266
           Y  +    LR    ++A++ +
Sbjct: 519 YNTITRGFLRNNETSRAIQLL 539



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 73/166 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y+TLI   CK+++ID+A+ +   M         +T+  ++  L   +R+++A  
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIA 397

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M      P+L  Y  LL   C    L     +LK +E   L  D +  +  + G C
Sbjct: 398 LFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMC 457

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           RAG +E A  L   +   G      TY+ ++  L R G   +A K 
Sbjct: 458 RAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKL 503



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 85/210 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P       LI   C L ++  A  V+  + + G      TF  ++  +    ++ EA  L
Sbjct: 94  PNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHL 153

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      PD+  Y  L+   C  GN +A   +L  M ++    +   Y+ ++   C+
Sbjct: 154 FDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCK 213

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +V EAF L   MV  G S    TY  ++ AL  L  +      +       I  D   
Sbjct: 214 DRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVS 273

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F ++   L    +  EA+ ++ +M +R ++
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVE 303



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 75/204 (36%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  + K+K     L +   M   G   +  T H +++      R+  A+ +
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  + ++   PD   +  L+     +G +     +  KM  E    D  TY  L+ G C+
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G    A  LL  MV          Y  ++ +L +     +A         + I  D   
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL   L  L  +     +L EM
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEM 262


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 110/231 (47%), Gaps = 6/231 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD--- 88
           +P    Y+ L+N    ++ ++    + +  ++        TFN + +      ++ +   
Sbjct: 340 KPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFS 399

Query: 89  LCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           LC ++  LD+G  P  S Y+ LI  LC+ + +  A  +++ M   G     +T++ ++  
Sbjct: 400 LCSSM--LDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDG 457

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L +  +   A  L+  M  + + P+   YN L+  YC +G L A   V  +ME+E+   +
Sbjct: 458 LCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPN 517

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
             TY+ L+ G C+  ++E A  LL  M++ G +   +TY  V   +L  G+
Sbjct: 518 VVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLEKGF 568



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 99/208 (47%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +K  P +  ++TLI   CK + +  A +  + M + G   + +T++ +++ L    ++EE
Sbjct: 267 NKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEE 326

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L + M  + + P++  YN L+  +C K  +   + V   + +++L  +  T++ ++ 
Sbjct: 327 AIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMID 386

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
             C+ G +EE F L   M+D+G     STY  ++  L R      A + +     + +K 
Sbjct: 387 AYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKG 446

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           D   +  L   L   ++   A  +L EM
Sbjct: 447 DVVTYNILIDGLCKNDKSRNAEKLLNEM 474



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 80/164 (48%), Gaps = 3/164 (1%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS-VLTRGK--RMEEAWGL 160
           + ++  I  LC+  K+++A   ++ M   G   + +T++ ++     RG   +M +A   
Sbjct: 201 NTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAF 260

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M+ M   ++ P+   +N L+  +C   N+ A     ++M+++ L  +  TY++L+ G C 
Sbjct: 261 MKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCN 320

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            G++EEA  L  +MV  G      TY  ++    +     +A K
Sbjct: 321 NGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATK 364



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 4/217 (1%)

Query: 97  DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D GF    ++ + L+  L K  KI +   V   M +     +  TF+  ++ L R  ++ 
Sbjct: 158 DYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLN 217

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN---LTATSGVLKKMEEEKLGADARTYD 212
           +A   +E MK   +SP++  YN L+  YC +G+   +      +K+M   K+  +  T++
Sbjct: 218 KAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFN 277

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
            L+ G C+   V  A      M   G      TY  ++  L   G   +A+       G 
Sbjct: 278 TLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGL 337

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +K +   + +L +     +   EA  +  +++K++L
Sbjct: 338 GLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQEL 374



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 5/145 (3%)

Query: 96  LDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           LD G P  +A   D L+    K  ++  A        + GF LS  + +P+LS L +  +
Sbjct: 121 LDGGRPGATALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENK 180

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           + +   + + M + R+  +L  +N  +   C  G L      ++ M+   +  +  TY+ 
Sbjct: 181 IGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNT 240

Query: 214 LVLGACR---AGRVEEAFVLLRRMV 235
           LV G C+   AG++ +A   ++ M+
Sbjct: 241 LVDGYCKRGSAGKMYKAEAFMKEML 265


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 111/223 (49%), Gaps = 5/223 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + +L+  LC + K ++A ++   + + G  L+A  F+ ++  L R  R+ EA  L
Sbjct: 410 PDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRL 469

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M  + V PD+ +YN L+  +C  G +   + +L  M    L  D  TY+ L+ G C+
Sbjct: 470 IDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCK 529

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A R+++A+ L R M+  G +    TY  ++  L ++G + +A +  +       K D   
Sbjct: 530 ARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYT 589

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
           +  + + L      +EA  + + +  +DL++     D + IN+
Sbjct: 590 YTIILNGLCRNNFVDEAFKMFQSLCSKDLQL-----DIFTINI 627



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 3/199 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+   C   +IDEA +++D+M   G      T++ +L    + +R+++A+ L
Sbjct: 480 PDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSL 539

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    ++P +  YN +L      G       +   M   +   D  TY  ++ G CR
Sbjct: 540 FREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCR 599

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V+EAF + + +      +   T   ++GALL+ G    A+          +  D E 
Sbjct: 600 NNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVET 659

Query: 281 FGSLGSKLI---GLERFNE 296
           +  +   LI    LE  +E
Sbjct: 660 YRLIAENLIKEGSLEELDE 678



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 88/210 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK  +  EA  + D +   G       +  +L        + E    
Sbjct: 270 PDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSF 329

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M    VSPD   +N +  AY  K  +     +  KM ++ L      Y AL+   C+
Sbjct: 330 LDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCK 389

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV++A +   +M+++G +     ++ ++  L  +  + +A K       + I+L+   
Sbjct: 390 LGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAF 449

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F  L   L    R  EA  ++  M + D++
Sbjct: 450 FNILMCNLCREGRVMEAQRLIDLMLRVDVR 479



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 92/211 (43%), Gaps = 3/211 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFG---LSAITFHPILSVLTRGKRMEEAWGLM 161
           +Y+ L+  LC  K+ +EAL ++ +MA+ G G    + +T+  ++  L + + ++ A G+ 
Sbjct: 166 SYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVF 225

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           + M +  V P+   Y  L+  Y   G       +L++M    L  D   Y  L+   C+ 
Sbjct: 226 QHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKN 285

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELF 281
           GR  EA  +   ++  G     + Y  ++      G  ++   F+ +     +  D  +F
Sbjct: 286 GRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIF 345

Query: 282 GSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
             + +        +EA  I  +M ++ L  G
Sbjct: 346 NIMFNAYAKKAMIDEAMHIFDKMRQQWLSPG 376



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 4/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  L+        + E    +D+M   G       F+ + +   +   ++EA  +
Sbjct: 305 PHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHI 364

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M++  +SP +  Y  L+ A C  G +        +M  E +  D   + +LV G C 
Sbjct: 365 FDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCT 424

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             + E+A  L   ++D G  +  + +  +M  L R G   +A + + +    D++ D   
Sbjct: 425 VDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVIS 484

Query: 281 FGSL--GSKLIGLERFNEANFILKEMNKRDLK 310
           + +L  G  L G  R +EA  +L  M    LK
Sbjct: 485 YNTLVDGHCLTG--RIDEAAKLLDVMVSIGLK 514



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 66/157 (42%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  ++  LC+   +DEA ++   +      L   T + ++  L +G R E+A  L   + 
Sbjct: 590 YTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATIS 649

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+  Y  +      +G+L     +   MEE     ++R  +ALV      G + 
Sbjct: 650 AYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIG 709

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            A V L ++ +   S+  ST + ++    R  Y   A
Sbjct: 710 RAGVYLSKLDEKNFSLEASTTSMLISIYSRAEYQQLA 746



 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 93/239 (38%), Gaps = 48/239 (20%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM-----EVMKE--IRVSP 171
           +D+AL++ D M       S  TF+ +L+V++R  R   A  L+      +++E  ++V+P
Sbjct: 32  LDDALKLFDEMLTYARPASVRTFNRLLTVVSRA-RCSSASELVVSLFNRMIRECSVKVAP 90

Query: 172 DLTAYNYLLTAYCFKGNLT-------------------------------------ATSG 194
               Y  L+  +C  G L                                      AT  
Sbjct: 91  SSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDI 150

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMG 251
           +L++M E     +  +Y+ L+ G C   R EEA  L+  M DDG    +    TY  V+ 
Sbjct: 151 LLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVID 210

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            L +     +A         + ++ +   +  L    +   ++ E   +L+EM+   L+
Sbjct: 211 GLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQ 269


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 23/221 (10%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  L +  ++D+A  +   M + GF L A  ++ ++    R KR+ EA+ L
Sbjct: 351 PDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYEL 410

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MKE  + PD+  YN LL+  C  G+  A   +L KM +        T+  L+ G C+
Sbjct: 411 LGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCK 470

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            G+++EA  + R M + G    +V+Y+T                 + F  +C  RD  L 
Sbjct: 471 VGQIDEALRIFRSMDESGIQPNTVIYNTL----------------IDF--LCKSRDTSLA 512

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL-KMGFKLRD 317
            ELF  +  K +        N +LK +  +++ +  F+L D
Sbjct: 513 IELFDEMREKHVP-ANVTTFNALLKGLRDKNMPEKAFELMD 552



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 16/224 (7%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMA--EGGFGLSAITFHPILSVLTRGKRMEEAW 158
           P    Y  L+  LCK  ++ +AL V+D M+  E       +  + I+  L +  R+++A 
Sbjct: 170 PNVVTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAV 229

Query: 159 GLMEV-MKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
             +E  M+ +   +P+   YN L  A+C  GN+     ++ KME+E++  +A T + +V 
Sbjct: 230 KFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVG 289

Query: 217 GACRAGRVEEAFVLLR--RMVDD---GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           G C  GRV  A    R  R V     G +V YST   ++GA L       A++       
Sbjct: 290 GLCWVGRVGAALEFFREKRTVWPEARGNAVTYST---LVGAFLHTNNVGVAMELFHEMVD 346

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
                D  ++ ++ S L    R ++A  +   M     K GF+L
Sbjct: 347 EGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMK----KAGFQL 386



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 129/308 (41%), Gaps = 23/308 (7%)

Query: 16  SVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD---CCFNTANT 72
           SVL   S  +S   PD       +++V+       L+     + +R R    C  NT  T
Sbjct: 193 SVLDGMSGPESDVCPD---VVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTV-T 248

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL------R 124
           +N + +       +   C  +A+++K    P     +T++G LC + ++  AL      R
Sbjct: 249 YNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKR 308

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
            V   A G    +A+T+  ++        +  A  L   M +   SPD   Y  +++   
Sbjct: 309 TVWPEARG----NAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLT 364

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
             G L     +   M++     DA+ Y+ L+ G CR  R+ EA+ LL  M + G      
Sbjct: 365 QAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVY 424

Query: 245 TYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
           TY  ++  L + G +    + +  M+ GG    + T  FG+L      + + +EA  I +
Sbjct: 425 TYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVT--FGTLIHGYCKVGQIDEALRIFR 482

Query: 303 EMNKRDLK 310
            M++  ++
Sbjct: 483 SMDESGIQ 490



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            PD +A+N LL A    G+L   + +   M +  +  +  TY  LV G C+AGRV +A  
Sbjct: 134 PPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALS 193

Query: 230 LLRRMVDDGQSVLYSTYA--HVMGALLRLGYYAQAVKFV 266
           +L  M      V        +++  L + G   QAVKFV
Sbjct: 194 VLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFV 232



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 6/167 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  LCK         ++  M +GG   S +TF  ++    +  +++EA  +
Sbjct: 421 PDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRI 480

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  + P+   YN L+   C   + +    +  +M E+ + A+  T++AL+ G   
Sbjct: 481 FRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGLRD 540

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYST------YAHVMGALLRLGYYAQ 261
               E+AF L+  M +   +  Y T      +  V+G   RL ++ Q
Sbjct: 541 KNMPEKAFELMDLMREGRCTPDYVTIDILMEWLPVIGETDRLKHFMQ 587


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 29/261 (11%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSV 85
           P +  Y+ ++ +      L+    +L++   D C  T  T+  +          + +L +
Sbjct: 187 PDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 246

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           L ++      L +G  P    Y+T+I  +CK   +D A  ++  +   G     I+++ +
Sbjct: 247 LDEM------LSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNIL 300

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L  L    + EE   LM  M   +  P++  Y+ L+T  C  G +     +LK M+E+ L
Sbjct: 301 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 360

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             DA +YD L+   CR GR++ A   L  M+ DG       Y  V+  L + G   QA+ 
Sbjct: 361 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL- 419

Query: 265 FVMVCGGRDIKLDTELFGSLG 285
                         E+FG LG
Sbjct: 420 --------------EIFGKLG 426



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 1/220 (0%)

Query: 91  RTLARLDK-GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           R +  L+K G P   AY+ LI   CK+ +ID+A RV+D M    F    +T++ ++  L 
Sbjct: 141 RVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLC 200

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              +++ A  +++ +      P +  Y  L+ A   +G +     +L +M    L  D  
Sbjct: 201 SRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMF 260

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ ++ G C+ G V+ AF ++R +   G      +Y  ++ ALL  G + +  K +   
Sbjct: 261 TYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 320

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                  +   +  L + L    +  EA  +LK M ++ L
Sbjct: 321 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 360



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 2/170 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRME 155
           D   P    Y+T++  LCK  K D+AL +   + E G   ++ +++ + S L + G ++ 
Sbjct: 393 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 452

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
               ++E++    + PD   YN +++  C +G +     +L  M   +      TY+ ++
Sbjct: 453 ALHMILEMVSN-GIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVL 511

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           LG C+A R+E+A  +L  MV +G     +TY  ++  +   GY A+A++ 
Sbjct: 512 LGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 561



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ L+  L    K +E  +++  M       + +T+  +++ L R  ++EEA  L
Sbjct: 292 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 351

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++MKE  ++PD  +Y+ L+ A+C +G L      L+ M  +    D   Y+ ++   C+
Sbjct: 352 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCK 411

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRD 273
            G+ ++A  +  ++ + G S   S+Y  +  AL   G   +A+  +  MV  G D
Sbjct: 412 NGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGID 466



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 82/215 (38%), Gaps = 22/215 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  YD L+ A   E  L+     L     D C      +N         +VL+ LC+ 
Sbjct: 362 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN---------TVLATLCKN 412

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             + D+              P  S+Y+T+   L        AL ++  M   G     IT
Sbjct: 413 -GKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEIT 471

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++S L R   +++A+ L+  M+     P +  YN +L  +C    +     VL  M 
Sbjct: 472 YNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMV 531

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
                 +  TY  L+ G   AG   EA  L   +V
Sbjct: 532 GNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 566


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y+T++  LCK  KID AL +++ MA   G GL+ + +  ++  L +  R +EA  
Sbjct: 255 PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARS 314

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +ME M      PD+  Y+ L+   C  G +      +++M  E    +A TY +LV G C
Sbjct: 315 VMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLC 374

Query: 220 RAGRVEEAFVLLRRM-----VDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             GR+ EA  ++  M       D      STY  ++G L + G    A+KF
Sbjct: 375 SCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKF 425



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 3/237 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   ++ L++    E++LE    LL   A         T+N + +       L +  + 
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209

Query: 93  LARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L R+      P   AY + +  LCK  K+  A +V++ M +     + +T++ IL  L +
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCK 269

Query: 151 GKRMEEAWGLMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
             +++ A  +ME M        ++  Y+ ++   C  G       V++ M       D  
Sbjct: 270 SGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVV 329

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           TY +LV G C+AG++EEA   +R M  +G      TY  ++  L   G  A+A + V
Sbjct: 330 TYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMV 386



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 1/207 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  ++  LCK  ++ EAL +++ M   G   + ITF+ ++S   R K +E A  L
Sbjct: 115 PDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSL 174

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    V  D+  YN L+   C  G L     +L++M+      D   Y + V G C+
Sbjct: 175 LQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCK 234

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD-IKLDTE 279
           +G+V  A  +L +M D        TY  ++  L + G    A++ +      D   L+  
Sbjct: 235 SGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVV 294

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            + ++   L  L R  EA  +++ M +
Sbjct: 295 GYSTVVDGLCKLGRTQEARSVMEAMAR 321



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 5/163 (3%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y T++  LCKL +  EA  V++ MA  G     +T+  +++ L +  ++EEA   +  M
Sbjct: 295 GYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREM 354

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD-----ARTYDALVLGAC 219
                 P+   Y  L+   C  G L     ++++M     G D       TY+AL+ G C
Sbjct: 355 AMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLC 414

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +AGR+++A    +RM   G      +Y+ ++  L R G   QA
Sbjct: 415 KAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 7/244 (2%)

Query: 66  CFNTANTFNFITNT---ENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDE 121
           C  T  TFN + +    E +L +   L +T+A    G       Y+TL+  LCK  ++ E
Sbjct: 148 CCPTLITFNTLISGCCREKNLEMADSLLQTMAA--SGVKADVVTYNTLMDGLCKAGRLQE 205

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A ++++ M   G     + +   +  L +  ++  A  ++E M++    P++  YN +L 
Sbjct: 206 AEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILD 265

Query: 182 AYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             C  G +     ++++M   +  G +   Y  +V G C+ GR +EA  ++  M   G  
Sbjct: 266 GLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCR 325

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
               TY+ ++  L + G   +AV+ V        K +   + SL   L    R  EA  +
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERM 385

Query: 301 LKEM 304
           ++EM
Sbjct: 386 VEEM 389



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 3/159 (1%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           ++R  +  P    Y TL+   CK  K++E+  ++  +   G    A+ +  +++ L +  
Sbjct: 72  ISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSA 131

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           R+ EA  L+E M      P L  +N L++  C + NL     +L+ M    + AD  TY+
Sbjct: 132 RLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYN 191

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAH 248
            L+ G C+AGR++EA  LL RM   G +   V YS++ +
Sbjct: 192 TLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVY 230



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 2/206 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+    K  +  +  R+++ MA  G   + ++++ +L  L + +R  EA  L
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 161 MEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
           +  M  +  R +PDL  Y+ LL+ YC  G +  +  +LK++    L  DA  Y  ++   
Sbjct: 68  VRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASL 127

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C++ R+ EA  LL  M+  G      T+  ++    R      A   +       +K D 
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADV 187

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
             + +L   L    R  EA  +L+ M
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERM 213



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 19  VTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           V  +  ++G  PD  T S+  + L  A   E  +E VR +    A + C   A T+  + 
Sbjct: 315 VMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREM----AMEGCKPNAVTYCSLV 370

Query: 78  NTENSLSVLSDLCRTLARL-------DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           +   S   L++  R +  +       D   P  S Y+ LIG LCK  +ID+AL+    M 
Sbjct: 371 HGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMR 430

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEA 157
             G     +++  I+  L R  R  +A
Sbjct: 431 SQGCDPDGVSYSTIVEGLARSGRALQA 457


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 1/199 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +D +I  LCK+ K  +A  VV+ M   GF  S IT++ I+    +  +M +A  L++ M 
Sbjct: 232 FDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMV 291

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
             R+ P+   +N L+  +C   N+TA   V ++M+ + L  +  TY++L+ G C  G+++
Sbjct: 292 AKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLD 351

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA  L  +M   G      TY  ++    +     +A + +   G R +  +   F +L 
Sbjct: 352 EALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLI 411

Query: 286 SKLIGLERFNEANFILKEM 304
                  R ++A F+L+ M
Sbjct: 412 DAYGKAGRMDDA-FLLRSM 429



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 71/134 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CK K + EA  ++D + + G   + ITF+ ++    +  RM++A+ L
Sbjct: 367 PNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLL 426

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M +  V P+++ YN L+  +C +GN+     + K+ME   L AD  TY+ LV   C+
Sbjct: 427 RSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCK 486

Query: 221 AGRVEEAFVLLRRM 234
            G   +A  LL  M
Sbjct: 487 KGETRKAVRLLDEM 500



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 96/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++ LI   C+ + +  A +V + M   G   + +T++ +++ L    +++EA GL
Sbjct: 297 PNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGL 356

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M  + + P++  YN L+  +C K  L     +L  + +  L  +  T++ L+    +
Sbjct: 357 QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGK 416

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR+++AF+L   M+D G     STY  ++    R G   +A K      G  +K D   
Sbjct: 417 AGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVT 476

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L   L       +A  +L EM
Sbjct: 477 YNILVDALCKKGETRKAVRLLDEM 500



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 121/295 (41%), Gaps = 33/295 (11%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL-CRTLARLD-- 97
           L++   + ++   +R LL+  A++  ++ +  F+       SLSVL    C     +D  
Sbjct: 113 LLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFH-------SLSVLGSWGCANSIIVDML 165

Query: 98  --------------KGFPRKSAY---------DTLIGRLCKLKKIDEALRVVDIMAEGGF 134
                         +GF R   Y         + ++  L K  +I     V   M     
Sbjct: 166 VWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRI 225

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
           G++ +TF  +++ L +  + ++A  ++E MK    SP +  YN ++  YC  G +     
Sbjct: 226 GVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADA 285

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +LK+M  +++  +  T++ L+ G CR   V  A  +   M   G      TY  ++  L 
Sbjct: 286 LLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLC 345

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             G   +A+       G  +K +   + +L +     +   EA  +L ++ KR L
Sbjct: 346 SNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGL 400


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 93/207 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  L +L ++DEAL     M E G+  + ++F+ I++ L R +R+ +A  +
Sbjct: 165 PDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEV 224

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +    P+L  Y+ ++   C    L     +L +M  E    D   Y  LVLG   
Sbjct: 225 FNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSA 284

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR++ A  LLRRMV  G      TY  V+  L ++G    A +            +   
Sbjct: 285 AGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVT 344

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + +L        R +E   +++EM  R
Sbjct: 345 YSALIGGYCRASRVDEGGKVMREMACR 371



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 1/151 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+ F P    Y  +I  LCK  ++DEA +++D M   G     + + P++   +   R+
Sbjct: 229 IDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRL 288

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A GL+  M      PD+  Y  ++   C  G +     + +++   K   +  TY AL
Sbjct: 289 DSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSAL 348

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           + G CRA RV+E   ++R M      V Y+T
Sbjct: 349 IGGYCRASRVDEGGKVMREMACRPNVVTYNT 379



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 1/156 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P   +Y TLI  LCKL ++D A  +   ++A GG   +A T++ ++  L +  R++ A  
Sbjct: 94  PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 153

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++   ++   +PD+  YN L+ A    G +        +M EE       +++A++ G C
Sbjct: 154 VITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 213

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           RA R+ +A  +   M+D        TY+ V+  L +
Sbjct: 214 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCK 249



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  +I +LCK+ ++D+A  +   +       + +T+  ++    R  R++E   
Sbjct: 304 IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG- 362

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
             +VM+E+   P++  YN ++             G+ ++M E     DARTY  L
Sbjct: 363 --KVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 415



 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           YN L+  +C   +L A   +L++M+ E +  + RT   ++ G CR GRV +A       +
Sbjct: 28  YNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASL 87

Query: 236 D--DGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGL 291
           +    Q  + S Y  ++  L +LG    A      MV  G   + +   + +L   L   
Sbjct: 88  ELAHAQPDVVS-YTTLINGLCKLGRVDAAFDLFRKMVAAG-GCRPNAFTYNALVDGLCKQ 145

Query: 292 ERFNEANFILKEMNKRDL 309
           +R + A  ++ E  KRD 
Sbjct: 146 DRLDAARAVITEARKRDF 163



 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +K  P    Y  LIG  C+  ++DE  +V   M E     + +T++ ++  L+   R EE
Sbjct: 336 NKCSPNVVTYSALIGGYCRASRVDEGGKV---MREMACRPNVVTYNTMIWGLSMVDRNEE 392

Query: 157 AWGLMEVMKEIRVSPDLTAYNYL 179
           A+G+   M E    PD   Y  L
Sbjct: 393 AYGMFREMSECGFVPDARTYRGL 415



 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +L A + TY+ L+ G C A  ++ AF LLR M  +G      T + ++  L R G  AQA
Sbjct: 20  QLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQA 79

Query: 263 VK 264
           ++
Sbjct: 80  LE 81


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI   C +  I++A+ + D M E G    AI ++ ++S L++  +++ A  ++  MK
Sbjct: 489 YTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMK 548

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E   SPD+ ++N L+  +C K  L     +LK+ME   +  D  TY+ L+    + G   
Sbjct: 549 EAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFS 608

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            A  L+++MV +G      TY  ++ A    G   +A+K 
Sbjct: 609 TAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKI 648



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 6/210 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG---GFGLSA--ITFHPILSVLTRGKRME 155
           P    +  LI  LCK +++DEAL V + M  G   GF +    IT++ ++  L +  R E
Sbjct: 338 PNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQE 397

Query: 156 EAWGLMEVMK-EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E  GL+E M+ + R  P+   YN L+  YC    + A   +  +M ++ +  +  T + L
Sbjct: 398 EGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTL 457

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           V G C+ GR+  A      M   G      TY  ++ A   +    +A++          
Sbjct: 458 VDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGC 517

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             D  ++ +L S L    + + A+F+L +M
Sbjct: 518 SPDAIVYYTLISGLSQAGKLDRASFVLSKM 547



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  L +  K+D A  V+  M E GF    ++F+ +++   R  +++EA+ +
Sbjct: 519 PDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEM 578

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+   + PD   YN L++ +   G+ +    ++KKM +E L     TY AL+   C 
Sbjct: 579 LKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCL 638

Query: 221 AGRVEEAFVLLRRM 234
            G ++EA  + R M
Sbjct: 639 NGNLDEAMKIFRDM 652



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 109/245 (44%), Gaps = 3/245 (1%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGH-ERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           +S  F  EP    Y+ L++      R  E +  +   R++  C     T+N + +     
Sbjct: 370 ESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKA 429

Query: 84  SVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           S++        +++K    P     +TL+  +CK  +I+ A+   + M   G   +A+T+
Sbjct: 430 SMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTY 489

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++        +E+A  L + M E   SPD   Y  L++     G L   S VL KM+E
Sbjct: 490 TALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKE 549

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
                D  +++ L+ G CR  +++EA+ +L+ M + G      TY  ++    + G ++ 
Sbjct: 550 AGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFST 609

Query: 262 AVKFV 266
           A + +
Sbjct: 610 AHRLM 614



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP       LI RLC+  + D A  V+  + + G  + A + + +L+ L R +  +    
Sbjct: 267 FPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNT 326

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK-----LGADARTYDAL 214
           L+  MKE+ + P++  +  L+   C    +     V +KM   +     +  D  TY+ L
Sbjct: 327 LLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTL 386

Query: 215 VLGACRAGRVEEAFVLLRRM 234
           + G C+ GR EE   L+ RM
Sbjct: 387 IDGLCKVGRQEEGLGLVERM 406



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 89/210 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+ LI   CK   I+ A  + D M + G   + +T + ++  + +  R+  A  
Sbjct: 413 MPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVE 472

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M+   +  +   Y  L+ A+C   N+     +  +M E     DA  Y  L+ G  
Sbjct: 473 FFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLS 532

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +AG+++ A  +L +M + G S    ++  ++    R     +A + +       IK D  
Sbjct: 533 QAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGV 592

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + +L S       F+ A+ ++K+M K  L
Sbjct: 593 TYNTLISHFSKTGDFSTAHRLMKKMVKEGL 622



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 3/237 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y  L++       L+   ++L+K           +FN + N     + L +    
Sbjct: 519 PDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEM 578

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  ++     P    Y+TLI    K      A R++  M + G   + +T+  ++     
Sbjct: 579 LKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCL 638

Query: 151 GKRMEEAWGLMEVMKEI-RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              ++EA  +   M    +V P+   YN L+ + C K  +     ++  M+ + +  +  
Sbjct: 639 NGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTN 698

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           T++A+  G      + +AF L+ RM +   +  Y T   +   L  +G  A+   FV
Sbjct: 699 TFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGETAKLKSFV 755



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLS 84
           +P    Y+ L++      D  T   L+ K  ++    T  T+  +        N + ++ 
Sbjct: 588 KPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMK 647

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +  D+  T     K  P    Y+ LI  LC+  ++D AL ++D M   G   +  TF+ +
Sbjct: 648 IFRDMSST----SKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAM 703

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
              L     + +A+ LM+ M E   +PD
Sbjct: 704 FKGLQEKNWLSKAFELMDRMTEHACNPD 731


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 135/314 (42%), Gaps = 24/314 (7%)

Query: 18  LVTRSFTKSGAFPDE-------------PTSAYYDDLVNA-----AGHERDLETVRYLLN 59
           LV +S ++ G  P               PT   Y+ +++A     + + RD +    +  
Sbjct: 137 LVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFR 196

Query: 60  KRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLK 117
              R+       T+N I     S   L      + +++K    P    Y+TLI   CK K
Sbjct: 197 DMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKK 256

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+ EA+ ++  MA GG   + I+++ +++ L    RM E   L+E M+   + PD   YN
Sbjct: 257 KVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYN 316

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C +GNL     +L +M  + L  +  TY  L+   C+AG +  A  +  +M   
Sbjct: 317 TLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVR 376

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFN 295
           G      TY  ++    + G   +A K +  M+  G    + T  + +L      L R  
Sbjct: 377 GLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVT--YNALVHGYCFLGRVQ 434

Query: 296 EANFILKEMNKRDL 309
           EA  IL+ M +R L
Sbjct: 435 EAVGILRGMVERGL 448



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 11/244 (4%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PDE T   Y+ LVN    E +L     LL++           T+   T   N +   
Sbjct: 307 GLVPDEVT---YNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTY---TTLINCMCKA 360

Query: 87  SDLCRTLARLD----KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            +L R +   D    +G  P +  Y TLI   C+   ++EA +V+  M   GF  S +T+
Sbjct: 361 GNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTY 420

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + ++       R++EA G++  M E  + PD+ +Y+ ++  +C +  L     + ++M E
Sbjct: 421 NALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVE 480

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           + +  D  TY +L+ G C   ++ EAF L R M+  G      TY  ++ A    G  ++
Sbjct: 481 KGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSK 540

Query: 262 AVKF 265
           A++ 
Sbjct: 541 ALRL 544



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 117/289 (40%), Gaps = 55/289 (19%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLD--------------KGF-PRKSAYDTLIGRLCK 115
           +TF+  ++  +S +V   + ++L+RL                GF P   +Y+ ++  L +
Sbjct: 120 DTFHLCSSPFSSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLR 179

Query: 116 -----LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
                 +  D+A RV   M   G   +  T++ I+  +     +E+  G M  M++  +S
Sbjct: 180 RSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGIS 239

Query: 171 PDLTAYNYLLTA-----------------------------------YCFKGNLTATSGV 195
           P++  YN L+ A                                    C KG ++    +
Sbjct: 240 PNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGEL 299

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +++M  + L  D  TY+ LV G C+ G + +  VLL  MV  G S    TY  ++  + +
Sbjct: 300 VEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCK 359

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            G  ++AV+       R ++ +   + +L          NEA  +L EM
Sbjct: 360 AGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEM 408



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 4/151 (2%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P    Y+ L+   C L ++ EA+ ++  M E G     +++  +++   R + + +A
Sbjct: 412 GFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKA 471

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           + + E M E  V PD   Y+ L+   C +  L     + ++M    L  D  TY +L+  
Sbjct: 472 FQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINA 531

Query: 218 ACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
            C  G + +A  L   MV  G    +V YS 
Sbjct: 532 YCVDGELSKALRLHDEMVQRGFLPDNVTYSV 562



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 1/140 (0%)

Query: 96  LDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +++G P    +Y T+I   C+ +++ +A ++ + M E G     +T+  ++  L   +++
Sbjct: 444 VERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKL 503

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+ L   M    + PD   Y  L+ AYC  G L+    +  +M +     D  TY  L
Sbjct: 504 VEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVL 563

Query: 215 VLGACRAGRVEEAFVLLRRM 234
           + G  +  R + A  LL ++
Sbjct: 564 INGLNKKARTKVAKRLLLKL 583



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 18/159 (11%)

Query: 88  DLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           DL R + R  +G P  +  Y +LI   C   ++ +ALR+ D M + GF    +T+  +++
Sbjct: 508 DLFREMMR--RGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLIN 565

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL---------------TAYCFKGNLTA 191
            L +  R + A  L+  +      PD   YN L+                 +C KG +  
Sbjct: 566 GLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNE 625

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
              V K M +     +A  Y+ ++ G  R G V +A+ L
Sbjct: 626 ADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNL 664


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 138/313 (44%), Gaps = 28/313 (8%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           + LLRK P   ++  S L + S  + G +    T  Y    +   G E+D+ ++  L+N 
Sbjct: 52  LMLLRK-PLPCIVEFSKLFS-SIVRMGHYE---TVVYLSKEIEFLGIEQDIHSLSILIN- 105

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
                CF   +  +F       LSVLS +      L  G  P    + TL+  LC   K+
Sbjct: 106 -----CFCHLHRVDF------GLSVLSKI------LKLGLEPSIVTFTTLLNGLCMEGKM 148

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           D+ + + D M   G   +  T++ I++ L++  +  EA G ++ M+++   P++  Y+ L
Sbjct: 149 DQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTL 208

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +  YC +G +     V   M  +    +  TY +L+ G C+  R+EEA  LL   +  G 
Sbjct: 209 IDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGL 268

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVK-FVMVCG-GRDIKLDTELFGSLGSKLIGLERFNEA 297
                T+  ++  L R G    A + F  +C  G    + T  +G L   L       EA
Sbjct: 269 VPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMT--YGVLLDGLCKHGNLEEA 326

Query: 298 NFILKEMNKRDLK 310
             + +EM +  +K
Sbjct: 327 FALFQEMQRSTVK 339



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+   CK+++I+EA++++D     G     +TF  I+S L R  R   A  L
Sbjct: 235 PNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQL 294

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +     +P++  Y  LL   C  GNL     + ++M+   +  +   Y  L+   C+
Sbjct: 295 FRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCK 354

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G++++   L  R++D+G      TY  ++GAL + G   +A K 
Sbjct: 355 CGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKL 399



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 2/225 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L++       ++  R + +      C     T+  + N    +  + +  + 
Sbjct: 200 PNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQL 259

Query: 93  LAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L   L KG  P    + T+I  LC+  +   A ++   +   G   + +T+  +L  L +
Sbjct: 260 LDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCK 319

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              +EEA+ L + M+   V P+L  Y  L+ + C  G +     +  ++ +E L  +  T
Sbjct: 320 HGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYT 379

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           Y ALV   C+ G + EA  L R+M +DG +     Y  ++   L+
Sbjct: 380 YTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQ 424


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 13/194 (6%)

Query: 74  NFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDE 121
           N   N  +  +++  LC+   ++D GF            P    Y+ L+  LCK  +++E
Sbjct: 6   NVALNEYSYTAMIKALCKA-GKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEE 64

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A R+   M +GG   S +TF  +++ L RG+R  E   +++ M+++ VSP+   YN L+ 
Sbjct: 65  AFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIG 124

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            +C KG+ +    +  +M  +K+   A TY+ +    C+ G +E A  +L  M+  G +V
Sbjct: 125 WHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTV 184

Query: 242 LYSTYAHVMGALLR 255
               +  V+  LL+
Sbjct: 185 HCGLFNTVVAWLLQ 198



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 96/220 (43%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           +  L KG   + A       L K K + EA +V+  M   G  L +IT++ ++    +  
Sbjct: 229 MRELCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDS 288

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           +MEEA  L   M      PDL  +N LL AYC  G +  T  +L +M+ E L  D  +Y 
Sbjct: 289 KMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYG 348

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
            ++ G C+A  + +A   L  ++D G       Y  ++G   R G  + A+  V      
Sbjct: 349 TIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSN 408

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
            I+     +GSL   +       EA  I  +  + ++ +G
Sbjct: 409 GIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLG 448



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 117/280 (41%), Gaps = 30/280 (10%)

Query: 1   MSLLRKLPTKFLIPQSVLVT---RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYL 57
           +S+  ++ T+ + P   L+T   R   K G    E    ++  L      +   + ++ +
Sbjct: 207 VSITNEMVTRGMRPNDPLMTACMRELCKGGKH-QEAVGIWFKTLNKGKYMKEATKVIQTM 265

Query: 58  LNK-----------RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSA 105
           LNK             R CC ++          E ++ +  D+ R      +GF P    
Sbjct: 266 LNKGIELDSITYNIMIRGCCKDS--------KMEEAIKLHGDMTR------RGFKPDLFT 311

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++TL+   C L K++E   ++D M   G     +++  I+    + K + +A   +  + 
Sbjct: 312 FNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELM 371

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  + P++  YN L+  Y   G+++     ++ M+   +     TY +L+   C AG VE
Sbjct: 372 DRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVE 431

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           EA  +  +  ++   +    Y  ++    +LG   +AV +
Sbjct: 432 EAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAY 471



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 71/184 (38%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I   CK K I +A   +  + + G   +   ++ ++    R   +  A   
Sbjct: 342 PDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDA 401

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E MK   + P    Y  L+   C  G +     +  +  E  +      Y  ++ G C+
Sbjct: 402 VETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCK 461

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ EA      M   G S    TY  +M A  + G   +A K      G  +  D   
Sbjct: 462 LGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNIT 521

Query: 281 FGSL 284
           +G+L
Sbjct: 522 YGTL 525



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 59/130 (45%)

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           L+  ++  ++  L +  +++  + ++  +    + P +  YN L+ A C  G +     +
Sbjct: 9   LNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRL 68

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             +ME+  +     T+  L+ G  R  R  E  ++L+ M   G S     Y  ++G   R
Sbjct: 69  KGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCR 128

Query: 256 LGYYAQAVKF 265
            G+ +QA++ 
Sbjct: 129 KGHCSQALRL 138



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           E   +  +  +Y A++   C+AG+V+  F +L  +   G      TY  +M AL + G  
Sbjct: 3   ESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRV 62

Query: 260 AQA--VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            +A  +K  M  GG    + T  FG L + L   ERF E   +L+EM +
Sbjct: 63  EEAFRLKGRMEQGGMTPSVVT--FGILINGLARGERFGEVGIVLQEMEQ 109



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 47/115 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+  +C    ++EA  +     E    L  I +  ++    +  +M EA   
Sbjct: 412 PTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAY 471

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            E M+   +SP+   Y  L+ AY   GN    S +  +M    +  D  TY  L+
Sbjct: 472 FEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI 526


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 117/261 (44%), Gaps = 2/261 (0%)

Query: 55  RYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGFPRK-SAYDTLIGR 112
            +  N+  +D       ++N + +     S++     T   +  KG P     ++TLI  
Sbjct: 447 NHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDG 506

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
            CK  +I ++  ++ ++ E GF     TF  I+  L R K++E+A G    M    +SP+
Sbjct: 507 YCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPN 566

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
              YN L+ + C  G++  +  +L+KM+ + +  D  +++AL+   CR G+VE+A  L  
Sbjct: 567 AVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFS 626

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            M+  G      TY   +    + G + +A +  +         D+     +   L+  +
Sbjct: 627 SMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQD 686

Query: 293 RFNEANFILKEMNKRDLKMGF 313
           +F  A  I K  ++  + + F
Sbjct: 687 QFEAAQKIAKTCSEWGILVNF 707



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 8/238 (3%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-----GFPRKSAYDTLIGRLCKLKKIDEALRVV 126
           TFN   N       L+++C  L R  +     GF   S Y  LI  L    K+ E     
Sbjct: 394 TFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGF---STYLALIKALYMAGKVTEGNHYF 450

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           + M + G   +  +++ ++    +   M++A    + M+   + P+L  +N L+  YC  
Sbjct: 451 NQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKG 510

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G +  +  +L  + E     D  T+ +++ G CRA ++E+A      MV  G S    TY
Sbjct: 511 GEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTY 570

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             ++ +L  +G   +++K +       I  D   F +L      + +  +A  +   M
Sbjct: 571 NILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSM 628



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 42/216 (19%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P +  Y+ LI  +C+   +DEALR+V  M   G+  +  T+  ++      K+++E
Sbjct: 246 DNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDE 305

Query: 157 AWGLMEVMKEIRVSPDLT-----------------------------------AYNYLLT 181
           A+ ++E MK  +VSP                                      A + LL 
Sbjct: 306 AFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLC 365

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
               K        +LKK  +     D+ T++  +    +   + E   +L R V+ G   
Sbjct: 366 CLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKF 425

Query: 242 LYSTYAHVMGALLRLG-------YYAQAVKFVMVCG 270
            +STY  ++ AL   G       Y+ Q VK  ++C 
Sbjct: 426 GFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCN 461



 Score = 43.9 bits (102), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
           GRL   K  DE    +  +   G   S   ++ ++  L +   ++ A+   + M      
Sbjct: 193 GRLGLAKYCDEIFGQISFL---GISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCK 249

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           PD   YN L+   C  G +     ++K+ME      +  TY  L+ G   A +V+EAF +
Sbjct: 250 PDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRV 309

Query: 231 LRRM 234
           L  M
Sbjct: 310 LETM 313



 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 27/155 (17%), Positives = 69/155 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + ++  +  L K   ++E   ++D   E G      T+  ++  L    ++ E    
Sbjct: 390 PDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHY 449

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  +  ++ +YN ++  +C    +   +   K+M+ + +  +  T++ L+ G C+
Sbjct: 450 FNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCK 509

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G + ++  LL  +++ G      T++ ++  L R
Sbjct: 510 GGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCR 544



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 17/129 (13%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           +I+E L  + I + G  GL+              K  +E +G +  +    +SP    YN
Sbjct: 179 RINEELLCILIGSWGRLGLA--------------KYCDEIFGQISFLG---ISPSTRLYN 221

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++ A     +L       ++M  +    D  TY+ L+ G CR+G V+EA  L+++M   
Sbjct: 222 AVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGL 281

Query: 238 GQSVLYSTY 246
           G S    TY
Sbjct: 282 GYSPNVFTY 290


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 78/162 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC   K D+A  ++  M + G  L  I F+ I+    +  R+ E+  L
Sbjct: 442 PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKL 501

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M  I V PD+  Y+ L+  YC  G +   + +L  M    +  D  TY+ L+ G C+
Sbjct: 502 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCK 561

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             R+E+A VL R M   G S    TY  ++  L +    A A
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAA 603



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 2/254 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  ++ A    + ++    +L    ++       T+N I +   S     +    
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++  D   P    Y++L+  LCK  +  EA ++ D M + G      T+  +L     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + E  GL+++M    + P+   ++ L+ AY  +G +     V  KM ++ L  D  T
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  ++   C++GRVE+A     +M+D+  S     Y  ++ +L     + +A + ++   
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 271 GRDIKLDTELFGSL 284
            R I LDT  F S+
Sbjct: 472 DRGICLDTIFFNSI 485



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 1/218 (0%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    Y ++I  LCK + +D+A+ V+  M + G   +  T++ I+       + 
Sbjct: 226 LDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA G ++ M    V PD+  YN L+   C  G  T    +   M +  L  +  TY  L
Sbjct: 286 KEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    G + E   LL  MV +G    +  ++ ++ A  + G   QA+        + +
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
             DT  +G++   L    R  +A    ++M    L  G
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 2/187 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEA 157
            P   +Y+ L+  LC   +  EAL ++ +M + G       +++  +++   +   +++A
Sbjct: 159 IPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKA 218

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +G    M +  + P++  Y+ ++ A C    +     VL  M +  +  + RTY+++V G
Sbjct: 219 YGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHG 278

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C +G+ +EA   L++M  DG      TY  +M  L + G   +A K       R +K +
Sbjct: 279 YCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPE 338

Query: 278 TELFGSL 284
              +G+L
Sbjct: 339 ITTYGTL 345



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ D+M   G     IT+  ++      
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + + PD   YN L+  YC    +     + ++ME   +  D  TY
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G  +  R   A  L   + + G  +  STY  ++  L +     +A++       
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D++L+T  F  +   L+ + R +EA
Sbjct: 648 TDLQLETRTFNIMIGALLKVGRNDEA 673



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 89/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+D+A+ V   M + G     +T+  ++ +L +  R+E+A   
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M + R+SP    YN L+ + C          ++ +M +  +  D   +++++   C+
Sbjct: 432 FEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY+ ++      G   +A K +       +K D   
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +    + R  +A  + +EM
Sbjct: 552 YNTLINGYCKISRMEDALVLFREM 575



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I    K   +D+A      M + G   + +T+  I++ L + + M++A  +
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V P+   YN ++  YC  G      G LKKM  + +  D  TY++L+   C+
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
            GR  EA  +   M   G     +TY    G LL+ GY
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTY----GTLLQ-GY 349



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 98/255 (38%), Gaps = 38/255 (14%)

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           A  D+  P    Y  LIG  C   ++D     +  + + GF + AI F P+L  L   KR
Sbjct: 82  AGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKR 141

Query: 154 MEEAWGL-MEVMKEIRVSPDLTAYNYLLTAYC---------------------------- 184
             +A  + +  M ++   P++ +YN LL   C                            
Sbjct: 142 TSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVS 201

Query: 185 --------FK-GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
                   FK G+L    G   +M +  +  +  TY +++   C+A  +++A  +L  MV
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
            +G      TY  ++      G   +A+ F+       ++ D   + SL   L    R  
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321

Query: 296 EANFILKEMNKRDLK 310
           EA  +   M KR LK
Sbjct: 322 EARKMFDSMTKRGLK 336



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 2/190 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C   K+DEA +++  M   G     +T++ +++   +  RME+A  L
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVL 571

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL-KKMEEEKLGADARTYDALVLGAC 219
              M+   VSPD+  YN +L    F+   TA +  L   + E     +  TY+ ++ G C
Sbjct: 572 FREMESSGVSPDIITYNIILQGL-FQTRRTAAAKELYVGITESGTQLELSTYNIILHGLC 630

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +    +EA  + + +      +   T+  ++GALL++G   +A           +  D  
Sbjct: 631 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVR 690

Query: 280 LFGSLGSKLI 289
            +  +   LI
Sbjct: 691 TYSLMAENLI 700



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 1/158 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK    DEALR+   +      L   TF+ ++  L +  R +EA  L   
Sbjct: 620 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAA 679

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +    + PD+  Y+ +      +G L     +   MEE    A++R  +++V    + G 
Sbjct: 680 LSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGD 739

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           +  A   L  M+D+    L ++ A +   LL  G Y +
Sbjct: 740 ITRAGTYL-FMIDEKHFSLEASTASLFLDLLSGGKYQE 776


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 139/295 (47%), Gaps = 14/295 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    ++ L++    + + E    L+N+     C     T+N +       S L+ +  
Sbjct: 208 QPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRD 267

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L ++     FP ++ Y+ L+   CKLK + EA  V+++M   G      T++ ++  L 
Sbjct: 268 LLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLC 327

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT-ATSGVLKKMEEEKLGADA 208
              +++EA  L + M+  ++ PD+  YN L+   CF+   + A   ++++M+   +  + 
Sbjct: 328 DEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDG-CFEHRGSDAAFKLVEEMKARGVKENG 386

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            T++ ++   C  G+++EA  ++ +MV+ G S    TY  ++    + G  A+A K +  
Sbjct: 387 VTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDE 446

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEA----------NFILKEMNKRDLKMGF 313
            G + +KLDT    +L   +   ++ ++A           +IL E+    L MG+
Sbjct: 447 MGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGY 501



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 87/193 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TLI    K ++ D AL++ + M E G   + IT++ I+  L    + ++A   +  +
Sbjct: 493 TYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNEL 552

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E  + PD +  N ++  YC++G +        KM E  L  D  T + L+ G CR G +
Sbjct: 553 LEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGML 612

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           E+   L    +  G+ +   TY  ++ +  +      A   +    G++++ D   + ++
Sbjct: 613 EKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAI 672

Query: 285 GSKLIGLERFNEA 297
            + L    R  EA
Sbjct: 673 VTGLTKAGRTEEA 685



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 97/251 (38%), Gaps = 36/251 (14%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++ GF P    Y+T+I   CK  K+ EA +++D M   G  L   T + +L  +   K++
Sbjct: 413 VESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQL 472

Query: 155 EEAWGL-----------------------------------MEVMKEIRVSPDLTAYNYL 179
           ++A+ L                                    E MKE  +   +  YN +
Sbjct: 473 DDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTI 532

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C  G        L ++ E+ L  D  T + ++ G C  G VE+AF    +MV+   
Sbjct: 533 IRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSL 592

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
                T   ++  L R G   + +        +   +DT  +  + S      R  +A  
Sbjct: 593 KPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFD 652

Query: 300 ILKEMNKRDLK 310
           ++ EM  ++L+
Sbjct: 653 LMTEMEGKNLE 663



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 12/194 (6%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KG  P +S  + +I   C    +++A +  + M E        T + +L  L R   +
Sbjct: 553 LEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGML 612

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+   L           D   YN +++++C +  L     ++ +ME + L  D  TY+A+
Sbjct: 613 EKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAI 672

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS-----------TYAHVMGALLRLGYYAQAV 263
           V G  +AGR EEA  L  +  + GQ V               Y+  + +L   G Y  A+
Sbjct: 673 VTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAM 732

Query: 264 KFVMVCGGRDIKLD 277
           K       + + L+
Sbjct: 733 KLFQQAEQKGVSLN 746



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 110/276 (39%), Gaps = 42/276 (15%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R   + G +   P +  Y+ ++ A      L  VR LL +      F   NT+N + +  
Sbjct: 232 RLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGY 291

Query: 81  NSLSVLSDLCRTLARLD-KG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIM--------- 129
             L  L +    +  +  KG  P    Y+T++  LC   KIDEA+R+ D M         
Sbjct: 292 CKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDV 351

Query: 130 ---------------AEGGFGL-----------SAITFHPILSVLTRGKRMEEAWGLMEV 163
                          ++  F L           + +T + ++       +++EA  +M  
Sbjct: 352 VTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVK 411

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M E   SPD   YN ++  YC  G +     ++ +M  + L  D  T + L+   C   +
Sbjct: 412 MVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQ 471

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           +++A+ L  +    G  +   TY    G L+ +GY+
Sbjct: 472 LDDAYTLTMKARKRGYILDEVTY----GTLI-MGYF 502



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 67/159 (42%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++ +I   C   KIDEA  V+  M E GF     T++ +++   +  +M EA+ +M+ M
Sbjct: 388 THNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEM 447

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               +  D    N LL   C +  L     +  K  +     D  TY  L++G  +  + 
Sbjct: 448 GRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQA 507

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           + A  L   M + G      TY  ++  L   G   QAV
Sbjct: 508 DRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAV 546



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 8/228 (3%)

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            NFI++     S+ + L R+    D   P K   DT +      K+     ++ + M   
Sbjct: 113 LNFISSDHPHHSLHAHLLRS----DHTIP-KPLLDTSLAAYVISKQPHLGHQIFNKMKRL 167

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE---IRVSPDLTAYNYLLTAYCFKGNL 189
            F  + +T + +L+ L R           EV ++   + V P++  +N L+  YC   N 
Sbjct: 168 RFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNT 227

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                ++ +M E     D  TY+ ++   C+  ++ +   LL +M + G     +TY  +
Sbjct: 228 EEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNIL 287

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           +    +L +  +A + + +  G+ +  D   + ++   L    + +EA
Sbjct: 288 VHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEA 335


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 88/207 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI  LC   ++ EAL +VD M E G     IT + +++ L    +  EA  L
Sbjct: 254 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 313

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E    P+   Y  +L   C  G       +L+KMEE  +  DA  Y  ++ G C+
Sbjct: 314 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 373

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G ++ AF L   M   G +    TY  ++G     G +    K +     R I  +   
Sbjct: 374 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 433

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           F  L    +   +  EA  + KEM  R
Sbjct: 434 FSVLIDSFVKEGKLREAEELHKEMIHR 460



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 97/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     +TL+  LC   K  EA+ ++D M E G   +A+T+ P+L+V+ +  +   A  L
Sbjct: 289 PDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 348

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  +  D   Y+ ++   C  G+L     +  +ME + +  +  TY+ L+ G C 
Sbjct: 349 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 408

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR ++   LLR M+    +    T++ ++ + ++ G   +A +       R I  DT  
Sbjct: 409 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 468

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL          ++AN ++  M
Sbjct: 469 YTSLIDGFCKENHLDKANQMVDLM 492



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI   CK  +ID+ L +   M+  G     +T++ ++       ++  A  L
Sbjct: 499 PNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKEL 558

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M   +V P++  Y  LL   C  G       + +K+E+ K+  D   Y+ ++ G C 
Sbjct: 559 FQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 618

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           A +V++A+ L   +   G      TY  ++G L + G  ++A
Sbjct: 619 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 660



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 103/236 (43%), Gaps = 2/236 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y  L++    E  L+    +++      C     TFN + N     + + D    
Sbjct: 464 PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL 523

Query: 93  LARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
             ++  +G    +  Y+TLI   C+L K++ A  +   M       + +T+  +L  L  
Sbjct: 524 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 583

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
               E+A  + E +++ ++  D+  YN ++   C    +     +   +  + +    +T
Sbjct: 584 NGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKT 643

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           Y+ ++ G C+ G + EA +L R+M +DG +    TY  ++ A L  G   ++VK +
Sbjct: 644 YNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLI 699



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 71/153 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+ LIG  C   + D+  +++  M +     + +TF  ++    +  ++ EA  L + M
Sbjct: 398 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 457

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               ++PD   Y  L+  +C + +L   + ++  M  +    + RT++ L+ G C+A R+
Sbjct: 458 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 517

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           ++   L R+M   G      TY  ++     LG
Sbjct: 518 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 550



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 88/202 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LCK   +D A  + + M   G   + IT++ ++       R ++   L+  M 
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 423

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + +++P++  ++ L+ ++  +G L     + K+M    +  D  TY +L+ G C+   ++
Sbjct: 424 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 483

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  ++  MV  G      T+  ++    +       ++       R +  DT  + +L 
Sbjct: 484 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 543

Query: 286 SKLIGLERFNEANFILKEMNKR 307
                L + N A  + +EM  R
Sbjct: 544 QGFCELGKLNVAKELFQEMVSR 565



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 1/190 (0%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           DL R +    +  P    +  L   + K K+ D  L +   M   G   +  T   +++ 
Sbjct: 172 DLFRDMIH-SRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINC 230

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             R +++  A+  M  + ++   P+   ++ L+   C +G ++    ++ +M E     D
Sbjct: 231 FCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPD 290

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             T + LV G C +G+  EA +L+ +MV+ G      TY  V+  + + G  A A++ + 
Sbjct: 291 LITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLR 350

Query: 268 VCGGRDIKLD 277
               R+IKLD
Sbjct: 351 KMEERNIKLD 360



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 68/153 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LC   + ++AL + + + +    L    ++ I+  +    ++++AW L
Sbjct: 569 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDL 628

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V P +  YN ++   C KG L+    + +KMEE+    D  TY+ L+     
Sbjct: 629 FCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLG 688

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            G   ++  L+  +   G SV  ST   V+  L
Sbjct: 689 DGDATKSVKLIEELKRCGFSVDASTIKMVIDML 721



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 88/214 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+ EA  +   M   G     IT+  ++    +   +++A  +
Sbjct: 429 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 488

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M      P++  +N L+  YC    +     + +KM    + AD  TY+ L+ G C 
Sbjct: 489 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 548

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++  A  L + MV         TY  ++  L   G   +A++         ++LD  +
Sbjct: 549 LGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 608

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
           +  +   +    + ++A  +   +  + +K G K
Sbjct: 609 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVK 642


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 117/256 (45%), Gaps = 4/256 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDL-ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90
           +P    Y+ L+N    E  L E +++L N  +  C  N   T N I  +  S     D  
Sbjct: 114 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVI-THNIILRSMCSTGRWMDAE 172

Query: 91  RTLA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + L+  L KG  P    ++ LI  LC+   +  A+ +++ M   G   ++++++P+L   
Sbjct: 173 KLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGF 232

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            + K+M+ A   +++M      PD+  YN LLTA C  G +     +L ++  +      
Sbjct: 233 CKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVL 292

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+ ++ G  + G+ E A  LL  M   G      TY+ ++  L R G   +A+KF   
Sbjct: 293 ITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHD 352

Query: 269 CGGRDIKLDTELFGSL 284
             G  I+ +   + S+
Sbjct: 353 LEGLGIRPNAITYNSI 368



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 91/197 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ ++  +C   +  +A +++  M   G   S +TF+ +++ L R   +  A  +
Sbjct: 150 PNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDI 209

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M     +P+  +YN LL  +C +  +      L  M       D  TY+ L+   C+
Sbjct: 210 LEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCK 269

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+ A  +L ++   G S +  TY  V+  L ++G   +A+K +     + +K D   
Sbjct: 270 DGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIIT 329

Query: 281 FGSLGSKLIGLERFNEA 297
           + SL S L    + +EA
Sbjct: 330 YSSLVSGLSREGKVDEA 346



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 83/167 (49%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y+TL+  LCK  K+D A+ +++ ++  G     IT++ ++  L++  + E A  
Sbjct: 254 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 313

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M+   + PD+  Y+ L++    +G +         +E   +  +A TY++++LG C
Sbjct: 314 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 373

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           ++ + + A   L  M+        +TY  ++  +   G   +A+  +
Sbjct: 374 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLL 420



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/225 (19%), Positives = 97/225 (43%), Gaps = 1/225 (0%)

Query: 83  LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           +SV+S  C     L   F   S +   +   CK   + +A++++D M   G     +T++
Sbjct: 63  ISVVSICCINQQTLFPCF-SLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYN 121

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +++ + +  R++EA   +  M      P++  +N +L + C  G       +L  M  +
Sbjct: 122 VLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK 181

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
                  T++ L+   CR G +  A  +L +M   G +    +Y  ++    +     +A
Sbjct: 182 GCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRA 241

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           ++++ +   R    D   + +L + L    + + A  IL +++ +
Sbjct: 242 IEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSK 286



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 6/210 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           P S  Y+ L++    E+ ++     L+      C+    T+N +      +  + V  ++
Sbjct: 220 PNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI 279

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
              L+   KG  P    Y+T+I  L K+ K + A++++D M   G     IT+  ++S L
Sbjct: 280 LNQLS--SKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 337

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           +R  +++EA      ++ + + P+   YN ++   C           L  M  ++     
Sbjct: 338 SREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 397

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            TY  L+ G    G  +EA  LL  +   G
Sbjct: 398 ATYTILIEGIAYEGLAKEALDLLNELCSRG 427


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 100/210 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LIG  C + K+D AL+  + M + G  ++  T++ ++  L    R  +A+ +
Sbjct: 217 PSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAV 276

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M++   SPD+  YN L+  YC +GN      V ++M ++ + A A TY +L+    R
Sbjct: 277 LEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSR 336

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+E   L    V  G       Y  ++ +    G   +A + +     + I  D   
Sbjct: 337 KGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMT 396

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L      L R +EA  ++ EM KR ++
Sbjct: 397 YNTLMRGFCLLGRLDEARTLIDEMTKRGIQ 426



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 7/211 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P K  Y TLI   CK+ ++++A++V D ++ +G    SA+ ++ ++       +++ A  
Sbjct: 181 PDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQ 240

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             E M +  ++  +  YN L+ A       +    VL++M++     D  TY+ L+ G C
Sbjct: 241 YREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYC 300

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G  ++A  +   M   G      TY  ++    R G   +  +   V   + I+ D  
Sbjct: 301 KEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVV 360

Query: 280 LFGSL-GSKLIG--LERFNEANFILKEMNKR 307
           ++ +L  S   G  +ER  E   I+ EM K+
Sbjct: 361 MYNALINSHCTGGDMERAYE---IMAEMEKK 388



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y +LI    +  ++ E  R+ ++  + G     + ++ +++    G  ME A+ +M  M+
Sbjct: 327 YTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEME 386

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + R+ PD   YN L+  +C  G L     ++ +M +  +  D  +Y+ L+ G    G ++
Sbjct: 387 KKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIK 446

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGAL--LRLGYYAQAVKFVMVCGG 271
           +A  +   M+D G +    TY  ++  L  +R G  A+ +   MV  G
Sbjct: 447 DALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKG 494



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 75/153 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C    ++ A  ++  M +       +T++ ++       R++EA  L
Sbjct: 357 PDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTL 416

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  + PDL +YN L++ Y  KG++     V  +M ++       TY+AL+ G C+
Sbjct: 417 IDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCK 476

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
             + ++A  L++ MV  G +   STY  ++  L
Sbjct: 477 IRQGDDAENLMKEMVAKGITPDDSTYISLIEGL 509



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           L   TF+ +L  L    +   A  L+  M      P+   YN ++  +C +G + A   V
Sbjct: 114 LCTTTFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARGRVQAALEV 169

Query: 196 LKKMEEEK-LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST-YAHVMGAL 253
           +++M E   +  D  TY  L+ G C+ GR+E+A  +   M+  G+    +  Y  ++G  
Sbjct: 170 MREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGY 229

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             +G    A+++      R I +    +  L   L    R ++A  +L+EM K
Sbjct: 230 CDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQK 282


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 89/209 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI  LC   ++ EAL +VD M E G     IT + +++ L    +  EA  L
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 215

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E    P+   Y  +L   C  G       +L+KMEE  +  DA  Y  ++ G C+
Sbjct: 216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G ++ AF L   M   G +    TY  ++G     G +    K +     R I  +   
Sbjct: 276 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 335

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F  L    +   +  EA  + KEM  R +
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGI 364



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 97/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     +TL+  LC   K  EA+ ++D M E G   +A+T+ P+L+V+ +  +   A  L
Sbjct: 191 PDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 250

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  +  D   Y+ ++   C  G+L     +  +ME + +  +  TY+ L+ G C 
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 310

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR ++   LLR M+    +    T++ ++ + ++ G   +A +       R I  DT  
Sbjct: 311 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 370

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL          ++AN ++  M
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLM 394



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI   CK  +ID+ L +   M+  G     +T++ ++       ++  A  L
Sbjct: 401 PNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKEL 460

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M   +V P++  Y  LL   C  G       + +K+E+ K+  D   Y+ ++ G C 
Sbjct: 461 FQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 520

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           A +V++A+ L   +   G      TY  ++G L + G  ++A
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 562



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 118/282 (41%), Gaps = 18/282 (6%)

Query: 3   LLRKLPTKFLIPQSV---LVTRSFTKSGAFPDE-------------PTSAYYDDLVNAAG 46
           LLR +  + + P  V   ++  SF K G   +              P +  Y  L++   
Sbjct: 320 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 379

Query: 47  HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGFPRKSA 105
            E  L+    +++      C     TFN + N     + + D      ++  +G    + 
Sbjct: 380 KENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTV 439

Query: 106 -YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TLI   C+L K++ A  +   M       + +T+  +L  L      E+A  + E +
Sbjct: 440 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++ ++  D+  YN ++   C    +     +   +  + +    +TY+ ++ G C+ G +
Sbjct: 500 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPL 559

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            EA +L R+M +DG +    TY  ++ A L  G   ++VK +
Sbjct: 560 SEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLI 601



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 71/153 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+ LIG  C   + D+  +++  M +     + +TF  ++    +  ++ EA  L + M
Sbjct: 300 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               ++PD   Y  L+  +C + +L   + ++  M  +    + RT++ L+ G C+A R+
Sbjct: 360 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 419

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           ++   L R+M   G      TY  ++     LG
Sbjct: 420 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 452



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 82/180 (45%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    +  L   + K K+ D  L +   M   G   +  T   +++   R +++  A
Sbjct: 83  RPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLA 142

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +  M  + ++   P+   ++ L+   C +G ++    ++ +M E     D  T + LV G
Sbjct: 143 FSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNG 202

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C +G+  EA +L+ +MV+ G      TY  V+  + + G  A A++ +     R+IKLD
Sbjct: 203 LCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLD 262



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 88/202 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LCK   +D A  + + M   G   + IT++ ++       R ++   L+  M 
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + +++P++  ++ L+ ++  +G L     + K+M    +  D  TY +L+ G C+   ++
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  ++  MV  G      T+  ++    +       ++       R +  DT  + +L 
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445

Query: 286 SKLIGLERFNEANFILKEMNKR 307
                L + N A  + +EM  R
Sbjct: 446 QGFCELGKLNVAKELFQEMVSR 467



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 68/153 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LC   + ++AL + + + +    L    ++ I+  +    ++++AW L
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDL 530

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V P +  YN ++   C KG L+    + +KMEE+    D  TY+ L+     
Sbjct: 531 FCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLG 590

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            G   ++  L+  +   G SV  ST   V+  L
Sbjct: 591 DGDATKSVKLIEELKRCGFSVDASTIKMVIDML 623



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 88/214 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+ EA  +   M   G     IT+  ++    +   +++A  +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M      P++  +N L+  YC    +     + +KM    + AD  TY+ L+ G C 
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++  A  L + MV         TY  ++  L   G   +A++         ++LD  +
Sbjct: 451 LGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 510

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
           +  +   +    + ++A  +   +  + +K G K
Sbjct: 511 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVK 544


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 1/169 (0%)

Query: 98  KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF      Y+T+ G LCKL + +EA R +  M E G   +A++F  ++ +  +   + E
Sbjct: 419 KGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVE 478

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  + + MK+    P++  YN L+  Y  KG L     +  +ME   + +D  TY  LV 
Sbjct: 479 AERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVH 538

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           G C  G+VEEA  LL  +   G ++   TY  ++  L + G   +A + 
Sbjct: 539 GECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRL 587



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 2/209 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ LVNA     D E V  +L     D     A T+  +     S   +++  +
Sbjct: 247 KPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEK 306

Query: 92  TLAR-LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              + L++G       + ++I   CKL  +  A  + D + E G   +A T+  ++    
Sbjct: 307 VFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTC 366

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              +++ A  L+  M+   +  +L  +N L+  YC KG +     +   ME++    D  
Sbjct: 367 NSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIF 426

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY+ +  G C+  R EEA   L  MV+ G
Sbjct: 427 TYNTIAGGLCKLNRHEEAKRWLFTMVEKG 455



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 86/197 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+    K+   +    ++ +M       +A T+  ++       ++ EA  +
Sbjct: 248 PNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKV 307

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M E  V  D+  +  +++  C  GN+     +  ++ E  L A+A TY AL+ G C 
Sbjct: 308 FEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCN 367

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +G+++ A +L+  M   G  +    +  ++    + G   +A++   V   +  + D   
Sbjct: 368 SGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFT 427

Query: 281 FGSLGSKLIGLERFNEA 297
           + ++   L  L R  EA
Sbjct: 428 YNTIAGGLCKLNRHEEA 444



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 2/183 (1%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           L  +DK     + Y  LI       KI EA +V + M E G       F  I+S   +  
Sbjct: 275 LMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLG 334

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
            M+ A+ L + + E  +  +   Y  L+   C  G L A   ++ +M+ + L  +   ++
Sbjct: 335 NMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFN 394

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK--FVMVCG 270
            L+ G C+ G ++EA  +   M   G      TY  + G L +L  + +A +  F MV  
Sbjct: 395 TLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEK 454

Query: 271 GRD 273
           G D
Sbjct: 455 GVD 457



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 79/185 (42%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M E    ++  +   ++  L +  R+E A  LM  M    + P++  YN L+ AY    +
Sbjct: 206 MVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMD 265

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
               + +L+ ME +K+  +A TY  L+     +G++ EA  +  +M++ G       +  
Sbjct: 266 FEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTS 325

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++    +LG   +A         R +  +   +G+L        + + A  ++ EM  + 
Sbjct: 326 IISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQG 385

Query: 309 LKMGF 313
           L M  
Sbjct: 386 LDMNL 390



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 4/147 (2%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +I  LCK  +++ A  ++  M   G   + +T++ +++   +    E    ++ +M+  +
Sbjct: 221 VIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDK 280

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V  +   Y  L+  Y   G +     V +KM E  + AD   + +++   C+ G ++ AF
Sbjct: 281 VVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAF 340

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLR 255
            L   + + G        AH  GAL+ 
Sbjct: 341 ALFDELNERG----LVANAHTYGALIH 363


>gi|147832566|emb|CAN63846.1| hypothetical protein VITISV_010038 [Vitis vinifera]
          Length = 457

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 4/201 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++    + ++ ++   +   M   G+   A ++  +++ LT+  R+EEA  +
Sbjct: 215 PDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDI 274

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME M    +  D+ +YN ++  YC  G L AT  +L ++EE  L  D  T+  L+ G C+
Sbjct: 275 MEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCK 334

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG VE A   L+ M   G          V+  L ++G    A+K        ++K D+  
Sbjct: 335 AGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMF---ASMEVK-DSFT 390

Query: 281 FGSLGSKLIGLERFNEANFIL 301
           + S+   L    R+  A+ +L
Sbjct: 391 YSSMVHNLCKARRYRHASRLL 411



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 5/196 (2%)

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           SL +  ++ RT  R     P   +Y++L+    KL K DEA RV   +       S+ TF
Sbjct: 96  SLDLFEEMLRTGIR-----PDVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTF 150

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + +++ L        A  L   ++     P+L  YN L+   C    L A   +L+++ E
Sbjct: 151 NIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGE 210

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
                DA TY  ++    R+ + E+ F +   M   G +    +Y  V+ AL + G   +
Sbjct: 211 SGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEE 270

Query: 262 AVKFVMVCGGRDIKLD 277
           A   +      DI LD
Sbjct: 271 ANDIMEQMARSDIDLD 286



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 37/248 (14%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TL+    +   ID A  V+  M E G     IT++ +++  T+   +  +  
Sbjct: 39  LPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSLD 98

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFK----------------GNLTATSGVLKKM---- 199
           L E M    + PD+ +YN L+  + FK                 NL  +S     M    
Sbjct: 99  LFEEMLRTGIRPDVWSYNSLMHCF-FKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGL 157

Query: 200 ----------------EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
                           + +    +  TY+ L+ G C++ ++  A  +LR + + G     
Sbjct: 158 CNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDA 217

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  VM    R   + Q  +       +    D   + ++ + L    R  EAN I+++
Sbjct: 218 ITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQ 277

Query: 304 MNKRDLKM 311
           M + D+ +
Sbjct: 278 MARSDIDL 285



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 93/200 (46%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           +  I  LCK+ ++++A  VV      G     +T++ +LS  +R   ++ A+ ++  MKE
Sbjct: 11  NICIASLCKVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKE 70

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             +SPD+  YN L+ A   +  L+ +  + ++M    +  D  +Y++L+    + G+ +E
Sbjct: 71  AGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHCFFKLGKPDE 130

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  + + ++        ST+  ++  L   GY   A+        +    +   +  L +
Sbjct: 131 ANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILIN 190

Query: 287 KLIGLERFNEANFILKEMNK 306
            L    + N A  IL+E+ +
Sbjct: 191 GLCKSRKLNAARRILRELGE 210



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           +D+   +AR D      S Y+T++   C+  K++   +++D + E G      T   ++ 
Sbjct: 272 NDIMEQMARSDIDLDIVS-YNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILID 330

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L +   +E A   ++ M ++     L A N ++   C  G L     +   ME +    
Sbjct: 331 GLCKAGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMFASMEVK---- 386

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           D+ TY ++V   C+A R   A  LL   +  G  +L +    V+   L
Sbjct: 387 DSFTYSSMVHNLCKARRYRHASRLLLACLRGGMKILRANQRSVIDGHL 434


>gi|225454807|ref|XP_002274300.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Vitis vinifera]
          Length = 457

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 4/201 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++    + ++ ++   +   M   G+   A ++  +++ LT+  R+EEA  +
Sbjct: 215 PDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDI 274

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME M    +  D+ +YN ++  YC  G L AT  +L ++EE  L  D  T+  L+ G C+
Sbjct: 275 MEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCK 334

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG VE A   L+ M   G          V+  L ++G    A+K        ++K D+  
Sbjct: 335 AGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMF---ASMEVK-DSFT 390

Query: 281 FGSLGSKLIGLERFNEANFIL 301
           + S+   L    R+  A+ +L
Sbjct: 391 YSSMVHNLCKARRYRHASRLL 411



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 93/247 (37%), Gaps = 35/247 (14%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TL+    +   ID A  V+  M E G     IT++ +++  T+   +  +  
Sbjct: 39  LPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSLD 98

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAY-----------------------------------C 184
           L E M    + PD+ +YN L+  +                                   C
Sbjct: 99  LFEEMLRTGIRPDVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGLC 158

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
             G       + + ++ +    +  TY+ L+ G C++ ++  A  +LR + + G      
Sbjct: 159 NNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAI 218

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           TY  VM    R   + Q  +       +    D   + ++ + L    R  EAN I+++M
Sbjct: 219 TYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQM 278

Query: 305 NKRDLKM 311
            + D+ +
Sbjct: 279 ARSDIDL 285



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 5/196 (2%)

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           SL +  ++ RT  R     P   +Y++L+    KL K DEA RV   +       S+ TF
Sbjct: 96  SLDLFEEMLRTGIR-----PDVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTF 150

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + +++ L        A  L   ++     P+L  YN L+   C    L A   +L+++ E
Sbjct: 151 NIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGE 210

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
                DA TY  ++    R+ + E+ F +   M   G +    +Y  V+ AL + G   +
Sbjct: 211 SGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEE 270

Query: 262 AVKFVMVCGGRDIKLD 277
           A   +      DI LD
Sbjct: 271 ANDIMEQMARSDIDLD 286



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 93/200 (46%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           +  I  LCK+ ++++A  VV      G     +T++ +LS  +R   ++ A+ ++  MKE
Sbjct: 11  NICIASLCKVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKE 70

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             +SPD+  YN L+ A   +  L+ +  + ++M    +  D  +Y++L+    + G+ +E
Sbjct: 71  AGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHCFFKLGKPDE 130

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  + + ++        ST+  ++  L   GY   A+        +    +   +  L +
Sbjct: 131 ANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILIN 190

Query: 287 KLIGLERFNEANFILKEMNK 306
            L    + N A  IL+E+ +
Sbjct: 191 GLCKSRKLNAARRILRELGE 210



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 5/176 (2%)

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           +D+   +AR D      S Y+T++   C+  K++   +++D + E G      T   ++ 
Sbjct: 272 NDIMEQMARSDIDLDIVS-YNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILID 330

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L +   +E A   ++ M ++     L A N ++   C  G L     +   ME +    
Sbjct: 331 GLCKAGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMFASMEVK---- 386

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           D+ TY ++V   C+A R   A  LL   +  G  +L +    V+  L   GY ++A
Sbjct: 387 DSFTYSSMVHNLCKARRYRHASRLLLACLRGGMKILRANQRSVIDGLCYSGYTSEA 442


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 110/241 (45%), Gaps = 2/241 (0%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL 123
           C     T+N + +     + + D  + L R+ +    P    Y++++  LCK  ++DEA 
Sbjct: 407 CLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAY 466

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            V +++  GG+ L  +T   ++  L + +R+++A  L+  M+    +PD+ AY  L+  +
Sbjct: 467 EVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGF 526

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C    L  +     +M ++       TY  ++   C++ RV +  +LL+ M++ G +   
Sbjct: 527 CKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDA 586

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
             Y  V+  L +   Y +A +   +            +  L  KL  + R +EA  +L+ 
Sbjct: 587 IVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEV 646

Query: 304 M 304
           M
Sbjct: 647 M 647



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 4/244 (1%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL--DKG-FPRKSAYDTLIGRLCKLKKIDEA 122
           C  +  TFN + +    +  L DL   L +L  D+G  P    Y+ +I   C+  +ID+A
Sbjct: 372 CKPSHFTFNLMIDMFCKVGQL-DLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDA 430

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
            ++++ M E G     +T++ I+S L +  +++EA+ + EV++      D+   + L+  
Sbjct: 431 RQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDG 490

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
            C    L     +L++ME      D   Y  L+ G C+A +++++      M+D G    
Sbjct: 491 LCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPT 550

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
             TY+ V+  L +          +     R +  D  ++ S+   L   + ++EA  + K
Sbjct: 551 VITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYK 610

Query: 303 EMNK 306
            M +
Sbjct: 611 LMKQ 614



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 115/276 (41%), Gaps = 2/276 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   Y  LV+A      +     +L       C     T+N + N    L  + +    
Sbjct: 234 PSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVL 293

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
             ++  +   P    Y+ LI   CK ++  +  +++  M + G   + IT++ ++  L +
Sbjct: 294 FNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVK 353

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +  +A+ L ++M      P    +N ++  +C  G L     + + M +     D  T
Sbjct: 354 SGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYT 413

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ ++ GACRA R+++A  LL RM + G      TY  ++  L +     +A +   V  
Sbjct: 414 YNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLR 473

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
                LD     +L   L    R ++A  +L+EM +
Sbjct: 474 NGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER 509



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  LI   CK  ++D++L     M + G   + IT+  ++  L +  R+ +   L
Sbjct: 514 PDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCML 573

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E  V+PD   Y  ++   C   +      + K M++        TY+ LV   C+
Sbjct: 574 LKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCK 633

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R++EA  LL  M  DG      TY  V     +   + +A +       R       +
Sbjct: 634 VSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFM 693

Query: 281 FGSLGSKLIGLERFNEANFILKE 303
           +  L +KL+  E+ ++A  I +E
Sbjct: 694 YSLLLTKLVAEEKMDQAMEIWEE 716



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 1/146 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK +   +A R++D M + G       ++ I+  L    R++ A   
Sbjct: 165 PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 224

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+    +P +  Y  L+ A C    ++  S +L+ M E     +  TY+ L+ G C+
Sbjct: 225 YRDMQR-NCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCK 283

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
            G ++EA VL  +M+++  S    TY
Sbjct: 284 LGNMDEAVVLFNQMLENSCSPDVFTY 309



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 5/151 (3%)

Query: 108 TLIGR-LCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +++GR L +L  +D+A++  D    + G+  S  T + +LS   R K+ +EA+ L +  +
Sbjct: 100 SVVGRVLQQLDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHR 159

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               SPD   Y+ L+  +C   +      +L +ME+  +      Y+ ++ G C  GRV+
Sbjct: 160 CGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVD 219

Query: 226 EAFVLLRRMVDD-GQSVLYSTYAHVMGALLR 255
            A V  R M  +   SV+  TY  ++ AL +
Sbjct: 220 SALVHYRDMQRNCAPSVI--TYTILVDALCK 248


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 26/248 (10%)

Query: 21  RSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT 79
           R  +  GA P   T +A+ + LV A      L+  R + ++           + N   N 
Sbjct: 174 RVLSSRGAPPSIKTCNAFLEALVRAG----QLDAAREVFDE--------MRESRNVALNE 221

Query: 80  ENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVD 127
            +  +++  LC+   ++D GF            P    Y+ L+  LCK  +++EA R+  
Sbjct: 222 YSYTAMIKALCKA-GKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKG 280

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M +GG   S +TF  +++ L RG+R  E   +++ M+++ VSP+   YN L+  +C KG
Sbjct: 281 RMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKG 340

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           + +    +  +M  +K+   A TY+ +    C+ G +E A  +L  M+  G +V    + 
Sbjct: 341 HCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFN 400

Query: 248 HVMGALLR 255
            V+  LL+
Sbjct: 401 TVVAWLLQ 408



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 94/206 (45%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + LI  LC+ K + EA +V+  M   G  L +IT++ ++    +  +MEEA  L   M  
Sbjct: 471 NALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTR 530

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
               PDL  +N LL AYC  G +  T  +L +M+ E L  D  +Y  ++ G C+A  + +
Sbjct: 531 RGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRK 590

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A   L  ++D G       Y  ++G   R G  + A+  V       I+     +GSL  
Sbjct: 591 AKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMY 650

Query: 287 KLIGLERFNEANFILKEMNKRDLKMG 312
            +       EA  I  +  + ++ +G
Sbjct: 651 WMCHAGLVEEAKTIFSQARENNVDLG 676



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 5/248 (2%)

Query: 17  VLVTRSFTKSGAFPDEP-TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNF 75
           V +T      G  P++P  +A   +L     H+  +      LNK        T+N    
Sbjct: 417 VSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNK-GLGVNLATSNALIH 475

Query: 76  ITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
                  +   + + +T+  L+KG    S  Y+ +I   CK  K++EA+++   M   GF
Sbjct: 476 GLCEGKYMKEATKVIQTM--LNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGF 533

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
                TF+ +L       +MEE + L++ MK   + PD+ +Y  ++  +C   ++     
Sbjct: 534 KPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKE 593

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
            L ++ +  L  +   Y+AL+ G  R G +  A   +  M  +G      TY  +M  + 
Sbjct: 594 YLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMC 653

Query: 255 RLGYYAQA 262
             G   +A
Sbjct: 654 HAGLVEEA 661



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 97/217 (44%), Gaps = 17/217 (7%)

Query: 50  DLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDT 108
           +L+++ Y  N   R CC ++          E ++ +  D+ R      +GF P    ++T
Sbjct: 499 ELDSITY--NIMIRGCCKDS--------KMEEAIKLHGDMTR------RGFKPDLFTFNT 542

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+   C L K++E   ++D M   G     +++  I+    + K + +A   +  + +  
Sbjct: 543 LLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRG 602

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + P++  YN L+  Y   G+++     ++ M+   +     TY +L+   C AG VEEA 
Sbjct: 603 LKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAK 662

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  +  ++   +    Y  ++    +LG   +AV +
Sbjct: 663 TIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAY 699



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK-LGADARTYDALVLGACRAGRVEEAFV 229
           P +   N  L A    G L A   V  +M E + +  +  +Y A++   C+AG+V+  F 
Sbjct: 183 PSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFE 242

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA--VKFVMVCGGRDIKLDTELFGSLGSK 287
           +L  +   G      TY  +M AL + G   +A  +K  M  GG    + T  FG L + 
Sbjct: 243 MLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVT--FGILING 300

Query: 288 LIGLERFNEANFILKEMNK 306
           L   ERF E   +L+EM +
Sbjct: 301 LARGERFGEVGIVLQEMEQ 319



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 86/194 (44%), Gaps = 5/194 (2%)

Query: 75  FITN-TENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           FIT+  + SL   +D  R L+   +G P      +  +  L +  ++D A  V D M E 
Sbjct: 157 FITSPAQGSLCRAADAFRVLS--SRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRES 214

Query: 133 -GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
               L+  ++  ++  L +  +++  + ++  +    + P +  YN L+ A C  G +  
Sbjct: 215 RNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEE 274

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +  +ME+  +     T+  L+ G  R  R  E  ++L+ M   G S     Y  ++G
Sbjct: 275 AFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIG 334

Query: 252 ALLRLGYYAQAVKF 265
              R G+ +QA++ 
Sbjct: 335 WHCRKGHCSQALRL 348



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 6/204 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I   CK K I +A   +  + + G   +   ++ ++    R   +  A   
Sbjct: 570 PDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDA 629

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E MK   + P    Y  L+   C  G +     +  +  E  +      Y  ++ G C+
Sbjct: 630 VETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCK 689

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ EA      M   G S    TY  +M A  + G   +A K      G  +  D   
Sbjct: 690 LGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNIT 749

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +G+L      + R +E N + K++
Sbjct: 750 YGTL------IARCSEVNSLDKDI 767



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRAR-----DC-CFNTANTFNFITNTENSLSV 85
           +PT+  Y+ +  A   E ++E    +L           C  FNT   +  +  T    SV
Sbjct: 358 KPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAW-LLQRTRRLESV 416

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           +S     + R  +  P        +  LCK  K  EA+ +       G G++  T + ++
Sbjct: 417 VSITNEMVTRGMR--PNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALI 474

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L  GK M+EA  +++ M    +  D   YN ++   C    +     +   M      
Sbjct: 475 HGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFK 534

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
            D  T++ L+   C  G++EE F LL +M  +G      +Y  ++
Sbjct: 535 PDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTII 579



 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 54/301 (17%), Positives = 116/301 (38%), Gaps = 16/301 (5%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           +V +   + G  P+E     Y++L+     +        L ++        TA T+N I 
Sbjct: 312 IVLQEMEQLGVSPNE---VIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIA 368

Query: 78  NT-------ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLC-KLKKIDEALRVVDIM 129
                    E +  +L D+      +  G      ++T++  L  + ++++  + + + M
Sbjct: 369 KALCKEGEMERAERILEDMLSIGMTVHCGL-----FNTVVAWLLQRTRRLESVVSITNEM 423

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   +       +  L +G + +EA G+        +  +L   N L+   C    +
Sbjct: 424 VTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYM 483

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
              + V++ M  + +  D+ TY+ ++ G C+  ++EEA  L   M   G      T+  +
Sbjct: 484 KEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTL 543

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + A   LG   +    +       ++ D   +G++       +   +A   L E+  R L
Sbjct: 544 LHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGL 603

Query: 310 K 310
           K
Sbjct: 604 K 604


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 5/249 (2%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           + R  T  G  PD  T   ++ L+       + E    L  +     C     T++ +  
Sbjct: 394 LARVLTSKGVLPDVCT---FNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIE 450

Query: 79  TENSLSVLSDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           +  S   L +    L  ++  G  R    Y+TLI  LCK  ++ +A  + D M   G   
Sbjct: 451 SLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSR 510

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S++T++ +++ L + KR+EEA  LM+ M    + PD   Y  +L  +C +G++   + ++
Sbjct: 511 SSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIV 570

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           + M       D  TY  L+ G C+AGRV+ A  LLR +   G  +    Y  V+ AL + 
Sbjct: 571 QNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKR 630

Query: 257 GYYAQAVKF 265
               +A++ 
Sbjct: 631 KRTKEAMRL 639



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 7/262 (2%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDLCRTLARLDKG-FPRKSAYD 107
           E V  L +  +RDC  NT  T+N +  T   EN +   ++L R L    KG  P    ++
Sbjct: 355 EAVEILHHMVSRDCEPNTV-TYNTLIGTLCKENHVEAATELARVLT--SKGVLPDVCTFN 411

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           +LI  LC     + A+ + + M E G      T+  ++  L   +R++EA  L++ M+  
Sbjct: 412 SLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELS 471

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
             + ++  YN L+   C    +     +  +ME   +   + TY+ L+ G C++ RVEEA
Sbjct: 472 GCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEA 531

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
             L+ +M+ +G      TY  ++    + G   +A   V        + D   +G+L   
Sbjct: 532 AQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGG 591

Query: 288 LIGLERFNEANFILKEMNKRDL 309
           L    R + A+ +L+ +  + +
Sbjct: 592 LCKAGRVDVASKLLRSVQMKGM 613



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 115/272 (42%), Gaps = 10/272 (3%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TEN 81
           + G  PDE T   Y  L+ +   ER L+    LL +     C      +N + +     N
Sbjct: 435 EKGCDPDEFT---YSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNN 491

Query: 82  SLSVLSDLCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            +    D+   +  L  G  R S  Y+TLI  LCK K+++EA +++D M   G      T
Sbjct: 492 RVGDAEDIFDQMEML--GVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFT 549

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  +L    +   ++ A  +++ M      PD+  Y  L+   C  G +   S +L+ ++
Sbjct: 550 YTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQ 609

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + +    + Y+ ++   C+  R +EA  L R M++ G      TY  V   L   G   
Sbjct: 610 MKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPI 669

Query: 261 Q-AVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
           Q AV F +    + I  +   FG L   L  L
Sbjct: 670 QEAVDFTVEMLEKGILPEFPSFGFLAEGLCSL 701



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 4/154 (2%)

Query: 96  LDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KGF      Y++LI  LCKL +IDEA+ ++  M       + +T++ ++  L +   +
Sbjct: 329 LEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHV 388

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E A  L  V+    V PD+  +N L+   C   N      + ++M+E+    D  TY  L
Sbjct: 389 EAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSIL 448

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
           +   C   R++EA +LL+ M   G     V+Y+T
Sbjct: 449 IESLCSERRLKEALMLLKEMELSGCARNVVVYNT 482



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 2/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+  +  L K  K+     +   M          TF+ ++  L +  ++  A  +
Sbjct: 162 PDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILM 221

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    + PD   +  L+  +  + ++     + + M E      + + + LV G C+
Sbjct: 222 LEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCK 281

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+EEA   +    ++G      T+  ++  L R G+  Q ++ +     +  +LD   
Sbjct: 282 EGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYT 339

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + SL S L  L   +EA  IL  M  RD
Sbjct: 340 YNSLISGLCKLGEIDEAVEILHHMVSRD 367


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 99/212 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI   CK   ID+A ++++ + E G      TF  I+  L + KR EEA   
Sbjct: 462 PNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALEC 521

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  ++P+   YN L+ + C  G++  +  +L++M++E +  D  +Y+AL+   CR
Sbjct: 522 FTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCR 581

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +VE+A  L   M   G +    TY+  + AL   G   +A K            D+ +
Sbjct: 582 MNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYI 641

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
              +   L+  E   EA  I++   ++ + + 
Sbjct: 642 CNLIIKILVQQEYVEEAQNIIERCRQKGISLN 673



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 91/206 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY  LI  L K +  +E  RV   +   G   +  +++ I++   R K M+ A      M
Sbjct: 396 AYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDM 455

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +   V P+L  +N L+  +C  G +     +L+ + E  L  D  T+ ++V G C+  R 
Sbjct: 456 QVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRT 515

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           EEA      M++ G +     Y  ++ +L  +G  A++VK +       I  DT  + +L
Sbjct: 516 EEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNAL 575

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
                 + +  +A  +   M++  L 
Sbjct: 576 IQIFCRMNKVEKAKKLFDSMSRSGLN 601



 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 58/139 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  L K   ID A      MA         T++ ++  + +   ++EA  L
Sbjct: 177 PTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRL 236

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK+    P++  Y  L+  +C    +    GV + M++  +  +  T  ALV G  R
Sbjct: 237 VRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALVHGVFR 296

Query: 221 AGRVEEAFVLLRRMVDDGQ 239
                +A  LL   +D  Q
Sbjct: 297 CVDPSKALELLSEFLDREQ 315



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           +SP    YN L+ A     ++       ++M  +   AD  TY+ L+ G C+ G V+EA 
Sbjct: 175 LSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEAL 234

Query: 229 VLLRRMVDDGQ 239
            L+R+M D G 
Sbjct: 235 RLVRQMKDKGH 245



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT+  Y+ L++A      ++       + A D C     T+N + +    + V+ +  R 
Sbjct: 177 PTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRL 236

Query: 93  LARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           + ++ DKG FP    Y  LI   C   ++DEA  V + M + G
Sbjct: 237 VRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSG 279


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 107/232 (46%), Gaps = 2/232 (0%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
            P    Y  L++    E DL++   LL++  +        T+N I N       + +  + 
Sbjct: 877  PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 936

Query: 93   LARLDK-GFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
            +   +  G    +  Y TL+   CK  ++D+A  ++  M   G   + +TF+ +++    
Sbjct: 937  VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCL 996

Query: 151  GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
               +E+   L+  M    ++P+ T +N L+  YC + NL A + + K M    +  D +T
Sbjct: 997  HGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKT 1056

Query: 211  YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            Y+ LV G C A  ++EA+ L + M   G SV  STY+ ++    +   + +A
Sbjct: 1057 YENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEA 1108



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 7/249 (2%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C+N A ++N + +    L  +++    L  ++ KG+ P   +Y T+I   C+  ++D+  
Sbjct: 666 CWNVA-SYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVW 724

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           ++++ M + G   ++ T+  I+ +L R  ++ EA      M    + PD   Y  L+  +
Sbjct: 725 KLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGF 784

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C +G++ A S    +M    +  D  TY A++ G C+ G + EA  L   M+  G     
Sbjct: 785 CKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDI 844

Query: 244 STYAHVMGALLRLGYYAQA--VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
            T+  +M    + G+   A  V   M+  G    + T  + +L   L      + AN +L
Sbjct: 845 ITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVT--YTTLIDGLCKEGDLDSANELL 902

Query: 302 KEMNKRDLK 310
            EM K  L+
Sbjct: 903 HEMWKIGLQ 911



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 89   LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            LCR L       P    +  L+   CK   I +A RV + M + G   + +T+  ++  L
Sbjct: 836  LCRGLE------PDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 889

Query: 149  TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
             +   ++ A  L+  M +I + P++  YN ++   C  GN+     ++ + E   L AD 
Sbjct: 890  CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 949

Query: 209  RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
             TY  L+   C++G +++A  +L  M+  G      T+  +M      G      K +  
Sbjct: 950  VTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW 1009

Query: 269  CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               + I  +   F  L  +         A  I K+M  R ++
Sbjct: 1010 MLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVE 1051



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 93/238 (39%), Gaps = 11/238 (4%)

Query: 84  SVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           S++  LCR   LA  ++ F         P    Y TL+   CK   I  A +    M   
Sbjct: 744 SIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSR 803

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
                 +T+  I+S   +   M EA  L   M    + PD+  +  L+  YC  G++   
Sbjct: 804 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDA 863

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             V   M +     +  TY  L+ G C+ G ++ A  LL  M   G      TY  ++  
Sbjct: 864 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 923

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           L + G   +AVK V       +  DT  + +L          ++A  IL EM  + L+
Sbjct: 924 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQ 981



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 5/207 (2%)

Query: 107 DTLIGRLCK-LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  + RL K   K   A+ V     E G   +  +++ ++  + +  R+ EA  L+ +M+
Sbjct: 637 NVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLME 696

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               +PD+ +Y+ ++  YC  G L     +++KM+++ L  ++ TY +++   CR  ++ 
Sbjct: 697 LKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLA 756

Query: 226 EAFVLLRRMVDDGQSVLYST--YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           EA      M+  GQ +L  T  Y  ++    + G    A KF      RDI  D   + +
Sbjct: 757 EAEEAFSEMI--GQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 814

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           + S    +    EA  +  EM  R L+
Sbjct: 815 IISGFCQIGDMVEAGKLFHEMLCRGLE 841



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 5/202 (2%)

Query: 13   IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
            I ++V +   F  +G   D  T   Y  L++A     +++  + +L +        T  T
Sbjct: 930  IEEAVKLVGEFEAAGLNADTVT---YTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVT 986

Query: 73   FNFITNTENSLSVLSDLCRTL-ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
            FN + N      +L D  + L   L KG  P  + ++ L+ + C    +  A  +   M 
Sbjct: 987  FNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMC 1046

Query: 131  EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
              G      T+  ++      + M+EAW L + MK    S  ++ Y+ L+  +  +    
Sbjct: 1047 SRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFV 1106

Query: 191  ATSGVLKKMEEEKLGADARTYD 212
                +  +M  + L AD   +D
Sbjct: 1107 EAREIFDQMRRDGLAADKEIFD 1128


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 115/245 (46%), Gaps = 7/245 (2%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y+ +V+    +  ++   YLL+    D C     T+N +     +     D    +A++ 
Sbjct: 330 YNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMS 389

Query: 98  KG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +    P    ++T+IG LC+     +A+ V   M E G   +++T+  ++  L +  +ME
Sbjct: 390 QTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKME 449

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCF--KGNLTATSGVLKKMEEEKLGADARTYDA 213
           ++  L+  M     +P++   NY L A C   +  L     ++ K+++  +   A  Y+ 
Sbjct: 450 QSLELLNEMGSKGFNPEI---NYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNT 506

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++LG CR G+ ++A  +L  MV DG     STY+ ++  L   GY  +A + +     RD
Sbjct: 507 ILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTLSSRD 566

Query: 274 IKLDT 278
           + +D 
Sbjct: 567 VIVDN 571



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 126/293 (43%), Gaps = 26/293 (8%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           PT+  Y+ +++    E D++  R LLN   +  C  NT N +N +     +     D+  
Sbjct: 220 PTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVN-YNTVLKGLRTAGRWEDVEE 278

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            +A +  +   P ++    +I  LC+      A+R+++ M++     + +T++ ++S L 
Sbjct: 279 LIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLC 338

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               ++ A  L+  M+     P++  YN L+   C          ++ KM +     D  
Sbjct: 339 EQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDIL 398

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           T++ ++   C+ G   +A  + ++M + G      TY+ V+  L + G   Q++      
Sbjct: 399 TFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSL------ 452

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD-----LKMGFKLRD 317
                    EL   +GSK  G       + + + +N+ D     ++M  KL+D
Sbjct: 453 ---------ELLNEMGSK--GFNPEINYHLLAECLNEEDKLVEAIQMVHKLQD 494



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 104/237 (43%), Gaps = 11/237 (4%)

Query: 84  SVLSD-LCRTLARLDKG---------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           S L+D  CR + RLD+           P   AY+ L+  LC   ++ +AL ++D M   G
Sbjct: 124 SALADGYCR-VGRLDEARRVVDGMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRG 182

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
                +T++ +L    +G+   +A  L+++M+    +P    YN ++   C +G++    
Sbjct: 183 CAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYAR 242

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            +L  +       +   Y+ ++ G   AGR E+   L+  M  +      +T + V+ +L
Sbjct: 243 ELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSL 302

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            + G + +A++ +      D   +   + ++ S L      + A ++L  M     K
Sbjct: 303 CQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCK 359



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 10/105 (9%)

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + V++     PD+   N L+   C +G     + V++        A A TY AL  G CR
Sbjct: 76  LRVVESSLCPPDVALANRLVRDLCRRGRPADAARVVEACGS---AATAVTYSALADGYCR 132

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAH--VMGALLRLGYYAQAV 263
            GR++EA    RR+V DG  VL S YA+  +M AL   G    A+
Sbjct: 133 VGRLDEA----RRVV-DGMPVLPSAYAYNPLMHALCVRGQVRDAL 172


>gi|357451329|ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484989|gb|AES66192.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 5/215 (2%)

Query: 85  VLSDLC--RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           ++ +LC  RTL+ +   +P    Y  LI  +C  K + EA R+VDI+ E GF      ++
Sbjct: 220 LVKNLCKSRTLSLV---YPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYN 276

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            I+       R  EA  +   MKE  V PDL  YN L+      G ++    +L+ M E+
Sbjct: 277 TIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEK 336

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
               D  TY +L+ G CR G    A  LL  M   G S    TY  ++  L +   + +A
Sbjct: 337 GHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKA 396

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           ++         +KLD   + +    L  + R  +A
Sbjct: 397 MELYGAMKSDGLKLDMASYATFVRALCSVGRVADA 431



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 118/289 (40%), Gaps = 51/289 (17%)

Query: 78  NTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           +T++  S LS + +TL  +  D   P K   D  +  LC   ++D+A+ ++  ++     
Sbjct: 152 STDSKYSTLSLIHQTLNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCS 211

Query: 136 L-----------------------SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
                                   + +T+  ++  +   K + EA  L+++++E    PD
Sbjct: 212 PDIYSYNFLVKNLCKSRTLSLVYPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPD 271

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
              YN ++  YC     +    V  +M+E+ +  D  TY+ L+ G  ++GRV EA  LLR
Sbjct: 272 CFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLR 331

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM--------------------VCGGR 272
            M + G      TY  +M  + R G    A+  +                     +C  R
Sbjct: 332 VMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSR 391

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
                 EL+G++ S  + L+  + A F+      R L    ++ D YE+
Sbjct: 392 MFDKAMELYGAMKSDGLKLDMASYATFV------RALCSVGRVADAYEV 434



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 36/176 (20%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           ++GF P    Y+T++   C L +  EA+ V + M E G     IT++ ++  L++  R+ 
Sbjct: 265 EEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVS 324

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L+ VM E    PD   Y  L+   C KG   A   +L++ME +    +  TY+ L+
Sbjct: 325 EAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLL 384

Query: 216 LGACRA-----------------------------------GRVEEAFVLLRRMVD 236
            G C++                                   GRV +A+ +    V+
Sbjct: 385 HGLCKSRMFDKAMELYGAMKSDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVE 440



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 69  TANTFNFITNTENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVD 127
           T NT  F  +    +S    L R +A  +KG FP +  Y +L+  +C+  +   AL +++
Sbjct: 309 TYNTLIFGLSKSGRVSEAKKLLRVMA--EKGHFPDEVTYTSLMNGMCRKGETLAALALLE 366

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M   G   +  T++ +L  L + +  ++A  L   MK   +  D+ +Y   + A C  G
Sbjct: 367 EMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYATFVRALCSVG 426

Query: 188 NLTATSGVLKKMEEEKLGADARTYDAL 214
            +     V     E K  +D   Y  L
Sbjct: 427 RVADAYEVFDYAVESKSLSDVAAYSTL 453


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 93/207 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  L +L ++DEAL     M E G+  + ++F+ I++ L R +R+ +A  +
Sbjct: 115 PDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEV 174

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +    P+L  Y+ ++   C    L     +L +M  E    D   Y  LVLG   
Sbjct: 175 FNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSA 234

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR++ A  LLRRMV  G      TY  V+  L ++G    A +            +   
Sbjct: 235 AGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVT 294

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + +L        R +E   +++EM  R
Sbjct: 295 YSALIGGYCRASRVDEGGKVMREMACR 321



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 1/151 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+ F P    Y  +I  LCK  ++DEA +++D M   G     + + P++   +   R+
Sbjct: 179 IDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRL 238

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A GL+  M      PD+  Y  ++   C  G +     + +++   K   +  TY AL
Sbjct: 239 DSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSAL 298

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           + G CRA RV+E   ++R M      V Y+T
Sbjct: 299 IGGYCRASRVDEGGKVMREMACRPNVVTYNT 329



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 1/156 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P   +Y TLI  LCKL ++D A  +   ++A GG   +A T++ ++  L +  R++ A  
Sbjct: 44  PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 103

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++   ++   +PD+  YN L+ A    G +        +M EE       +++A++ G C
Sbjct: 104 VIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 163

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           RA R+ +A  +   M+D        TY+ V+  L +
Sbjct: 164 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCK 199



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  +I +LCK+ ++D+A  +   +       + +T+  ++    R  R++E   
Sbjct: 254 IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG- 312

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
             +VM+E+   P++  YN ++             G+ ++M E     DARTY  L
Sbjct: 313 --KVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 365



 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 11/152 (7%)

Query: 33  PTSAYYDDLV---NAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           P    Y  LV   +AAG    L++   LL +     C     T+  + +    +  + D 
Sbjct: 220 PDLVAYTPLVLGFSAAGR---LDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDA 276

Query: 90  CRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
                 L  +K  P    Y  LIG  C+  ++DE  +V   M E     + +T++ ++  
Sbjct: 277 HEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREMACRPNVVTYNTMIWG 333

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           L+   R EEA+G+   M E    PD   Y  L
Sbjct: 334 LSMVDRNEEAYGMFREMSECGFVPDARTYRGL 365



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS-TYAHVMGALLRLGYYAQAVKF 265
           D  +Y  L+ G C+ GRV+ AF L R+MV  G     + TY  ++  L +      A   
Sbjct: 45  DVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAV 104

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           +     RD   D   + +L + L  L R +EA     +M +
Sbjct: 105 IAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTE 145


>gi|297737331|emb|CBI26532.3| unnamed protein product [Vitis vinifera]
          Length = 441

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 4/201 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++    + ++ ++   +   M   G+   A ++  +++ LT+  R+EEA  +
Sbjct: 199 PDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDI 258

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME M    +  D+ +YN ++  YC  G L AT  +L ++EE  L  D  T+  L+ G C+
Sbjct: 259 MEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCK 318

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG VE A   L+ M   G          V+  L ++G    A+K        ++K D+  
Sbjct: 319 AGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMF---ASMEVK-DSFT 374

Query: 281 FGSLGSKLIGLERFNEANFIL 301
           + S+   L    R+  A+ +L
Sbjct: 375 YSSMVHNLCKARRYRHASRLL 395



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 21/232 (9%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TL+    +   ID A  V+  M E G     IT++ +++  T+   +  +  
Sbjct: 39  LPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSLD 98

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-------------------- 199
           L E M    + PD+ +YN L+  Y    NL  +S     M                    
Sbjct: 99  LFEEMLRTGIRPDVWSYNSLM-HYIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYL 157

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           + +    +  TY+ L+ G C++ ++  A  +LR + + G      TY  VM    R   +
Sbjct: 158 QRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCCFRSRQF 217

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            Q  +       +    D   + ++ + L    R  EAN I+++M + D+ +
Sbjct: 218 EQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQMARSDIDL 269



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 109/281 (38%), Gaps = 48/281 (17%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT- 79
           R   + G  P+  T   Y+ L+N     R L   R +L +         A T+  +    
Sbjct: 155 RYLQRQGFVPELVT---YNILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCC 211

Query: 80  ------ENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEG 132
                 E    + S++        KG+   + +Y  +I  L K  +++EA  +++ MA  
Sbjct: 212 FRSRQFEQGFEIFSEM------KSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQMARS 265

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
              L  ++++ ++++  R  ++E  + L++ ++E  +  D   +  L+   C  GN+   
Sbjct: 266 DIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCKAGNVEGA 325

Query: 193 SGVLKKMEEE-----------------KLGA--------------DARTYDALVLGACRA 221
              LK M +                  K+G               D+ TY ++V   C+A
Sbjct: 326 LRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMFASMEVKDSFTYSSMVHNLCKA 385

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            R   A  LL   +  G  +L +    V+  L   GY ++A
Sbjct: 386 RRYRHASRLLLACLRGGMKILRANQRSVIDGLCYSGYTSEA 426



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 60/141 (42%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S+ TF+ +++ L        A  L   ++     P+L  YN L+   C    L A   +L
Sbjct: 130 SSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRIL 189

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           +++ E     DA TY  ++    R+ + E+ F +   M   G +    +Y  V+ AL + 
Sbjct: 190 RELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKT 249

Query: 257 GYYAQAVKFVMVCGGRDIKLD 277
           G   +A   +      DI LD
Sbjct: 250 GRLEEANDIMEQMARSDIDLD 270


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P      +L+   C  K+I EA+ +VD M E G+    +TF+ ++  L    +  EA  L
Sbjct: 149 PDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVAL 208

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M      PDL  Y  ++   C +G++     +LKKME+ K+ A+   Y+ ++ G C+
Sbjct: 209 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCK 268

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +++AF L  +M   G      TY  ++  L   G ++ A + +     R I  +   
Sbjct: 269 YKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 328

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F SL        +  EA  +  EM +R +
Sbjct: 329 FNSLIDAFAKEGKLIEAEKLFDEMIQRSI 357



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 130/303 (42%), Gaps = 13/303 (4%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK------RARDCC 66
           +P ++ V     K G  PD  T +    L+N   H + +     L+++      +     
Sbjct: 132 LPLALAVLGKMMKLGYEPDIVTLS---SLLNGYCHGKRISEAVALVDQMVEMGYKPDTVT 188

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126
           FNT     F+ N  +    L D  R +AR  +  P    Y T++  LCK   ID AL ++
Sbjct: 189 FNTLIHGLFLHNKASEAVALID--RMVARGCQ--PDLFTYGTVVNGLCKRGDIDLALSLL 244

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M +G    + + ++ I+  L + K M++A+ L   M+   + PD+  YN L++  C  
Sbjct: 245 KKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNY 304

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G  +  S +L  M E K+  +  T+++L+    + G++ EA  L   M+         TY
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 364

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             ++          +A +   +   +D   D   + +L       +R  E   + +EM++
Sbjct: 365 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQ 424

Query: 307 RDL 309
           R L
Sbjct: 425 RGL 427



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 2/228 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  +VN      D++    LL K  +         +N I +       + D   
Sbjct: 218 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFD 277

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              +++ KG  P    Y++LI  LC   +  +A R++  M E     + +TF+ ++    
Sbjct: 278 LFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFA 337

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  ++ EA  L + M +  + P++  YN L+  +C    L     +   M  +    D  
Sbjct: 338 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV 397

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           TY+ L+ G C+A RVEE   L R M   G      TY  ++  L + G
Sbjct: 398 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG 445



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI   CK K+++E + +   M++ G   + +T++ ++  L +    + A  
Sbjct: 393 LPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 452

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    V PD+  Y+ LL   C  G L     V + +++ K+  +  TY+ ++ G C
Sbjct: 453 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMC 512

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +AG+VE+ + L   +   G       Y  ++    R G   +A
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEA 555



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 103/234 (44%), Gaps = 2/234 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           E     Y+ +++     + ++    L NK           T+N + +   +    SD  R
Sbjct: 253 EANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASR 312

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+ +   K  P    +++LI    K  K+ EA ++ D M +     + +T++ +++   
Sbjct: 313 LLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFC 372

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              R++EA  +  +M      PD+  YN L+  +C    +     + ++M +  L  +  
Sbjct: 373 MHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 432

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           TY+ L+ G  +AG  + A  + ++MV DG      TY+ ++  L + G   +A+
Sbjct: 433 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL 486



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 25/254 (9%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L+N       L+  + +        C     T+N         +++   C+
Sbjct: 358 DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYN---------TLIKGFCK 408

Query: 92  TLARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
              R+++G                  Y+TLI  L +    D A ++   M   G     I
Sbjct: 409 A-KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 467

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +L  L +  ++E+A  + E +++ ++ P++  YN ++   C  G +     +   +
Sbjct: 468 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL 527

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG-- 257
             + +  +   Y  ++ G CR G  EEA  L R M +DG       Y  ++ A LR G  
Sbjct: 528 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDK 587

Query: 258 -YYAQAVKFVMVCG 270
              A+ +K +  CG
Sbjct: 588 AASAELIKEMRSCG 601



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 90/213 (42%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           + FP    +  L+  + K+ K D  + + + M   G   +  T+  +L+   R  ++  A
Sbjct: 76  RPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLA 135

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++  M ++   PD+   + LL  YC    ++    ++ +M E     D  T++ L+ G
Sbjct: 136 LAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHG 195

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
                +  EA  L+ RMV  G      TY  V+  L + G    A+  +       I+ +
Sbjct: 196 LFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEAN 255

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             ++ ++   L   +  ++A  +  +M  + +K
Sbjct: 256 VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIK 288



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 84/189 (44%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+D+A+ +   M +     S I F  +LS + +  + +    L E M+ + +  +   Y+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            LL  +C +  L     VL KM +     D  T  +L+ G C   R+ EA  L+ +MV+ 
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G      T+  ++  L      ++AV  +     R  + D   +G++ + L      + A
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 298 NFILKEMNK 306
             +LK+M K
Sbjct: 241 LSLLKKMEK 249



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 71/153 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK  K+++AL V + + +     +  T++ ++  + +  ++E+ W L
Sbjct: 464 PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDL 523

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V P++  Y  +++ +C KG       + ++M+E+    D+  Y+ L+    R
Sbjct: 524 FCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLR 583

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            G    +  L++ M   G     ST + V+  L
Sbjct: 584 DGDKAASAELIKEMRSCGFVGDASTISMVINML 616



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 1/129 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  +CK  K+++   +   ++  G   + I +  ++S   R    EEA  L
Sbjct: 499 PNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 558

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MKE    PD   YN L+ A    G+  A++ ++K+M       DA T  ++V+    
Sbjct: 559 FREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI-SMVINMLH 617

Query: 221 AGRVEEAFV 229
            GR+E++++
Sbjct: 618 DGRLEKSYL 626


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 135/318 (42%), Gaps = 25/318 (7%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SL++ L     + Q+++        G  PD  T   Y  +++A   E  L   R  L + 
Sbjct: 16  SLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYT---YTAVIHALCVENRLHEARKFLEEM 72

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-----------KGFPRKSAYDTLI 110
           A     N   T N +T T     ++  LC+   R+D           K  P    Y++LI
Sbjct: 73  A-----NRNLTPNVVTYT----VLIDGLCKG-GRVDEAVALLSKMRKKCVPTAVTYNSLI 122

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
             LCK ++  EA  +++ M   G      T+  +++   + K+ ++A  + E +      
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGACRAGRVEEAFV 229
           PD+  Y+ L+   C +G L     +  +M +      +  TY++L+ G CR G+++EA  
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           LL RM + G S    TY  +M    +L     A   +     + +  D   F SL   L 
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 290 GLERFNEANFILKEMNKR 307
              R ++A  IL EM ++
Sbjct: 303 RENRLSDAVHILGEMRRK 320



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 2/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK  ++DEA+ ++  M +     +A+T++ ++S L + +R  EA+ L
Sbjct: 79  PNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP-TAVTYNSLISGLCKAERASEAYDL 137

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M      PD+  Y  L+T +C          V +++       D  TY  L+ G C+
Sbjct: 138 LEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCK 197

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYS-TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            GR++EA  L  RM+  G  +  + TY  ++    R+G   +A+  +          D  
Sbjct: 198 EGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVV 257

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + +L +    L R ++A  +L +M ++ L
Sbjct: 258 TYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 104/205 (50%), Gaps = 2/205 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y++LI   C++ K+DEA+ +++ MAE G     +T+  +++   +  R+++A+ 
Sbjct: 218 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 277

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M    ++PD+  +  L+   C +  L+    +L +M  +       TY+ ++ G C
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 337

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           RA ++EEA   +   +D   +V+  ++  ++  L ++   ++A++ V     R    D  
Sbjct: 338 RANQLEEARKFMLEEMDCPPNVV--SFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVV 395

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
           ++ ++   L   ++ +EA  + ++M
Sbjct: 396 MYTTVIDGLCREKKVDEACRVYRKM 420



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 1/192 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y +LI  LCK+K++++AL  +  M   GF     T+  ++  L    R+ EA   +E M 
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMA 73

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++P++  Y  L+   C  G +     +L KM  +K    A TY++L+ G C+A R  
Sbjct: 74  NRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERAS 132

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA+ LL  MV  G      TY  ++    +      A++       R  + D   +  L 
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 286 SKLIGLERFNEA 297
             L    R  EA
Sbjct: 193 DGLCKEGRLKEA 204



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 112/247 (45%), Gaps = 25/247 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ L++       ++    LL + A      T ++ + +T T    ++++  C+ 
Sbjct: 219 PNTVTYNSLISGFCRMGKMDEAMNLLERMAE-----TGSSPDVVTYT----TLMNGFCK- 268

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           LARLD  +            P    + +L+  LC+  ++ +A+ ++  M       +  T
Sbjct: 269 LARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT 328

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ IL    R  ++EEA   M  ++E+   P++ ++N ++   C     +    ++++  
Sbjct: 329 YNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 386

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS-TYAHVMGALLRLGYY 259
             +   D   Y  ++ G CR  +V+EA  + R+M+++   +  S TY+ ++  L   G  
Sbjct: 387 RRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGML 446

Query: 260 AQAVKFV 266
            +A  ++
Sbjct: 447 DRARGYI 453



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T+  ++  L + KR+E+A   +  M      PD+  Y  ++ A C +  L      L++
Sbjct: 12  VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           M    L  +  TY  L+ G C+ GRV+EA  LL +M
Sbjct: 72  MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 8/208 (3%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
             ++G+ PD  T   Y  L+N       L+    LLN+  R        TF  + +    
Sbjct: 247 MAETGSSPDVVT---YTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR 303

Query: 83  LSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            + LSD    L  + +    P    Y+T++   C+  +++EA +   ++ E     + ++
Sbjct: 304 ENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF--MLEEMDCPPNVVS 361

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM- 199
           F+ ++  L +  R  EA  L+E  +  R +PD+  Y  ++   C +  +     V +KM 
Sbjct: 362 FNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKML 421

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEA 227
           EE     ++ TY  L+ G C AG ++ A
Sbjct: 422 EEPGCLPNSITYSTLITGLCNAGMLDRA 449



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 8/218 (3%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
             T+ G  PD  T   +  L++    E  L    ++L +  R  C  T  T+N I +   
Sbjct: 281 QMTRKGLTPDVVT---FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 337

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
             + L +  + +       P   +++ +I  LCK+ +  EA+ +V+           + +
Sbjct: 338 RANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 397

Query: 142 HPILSVLTRGKRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
             ++  L R K+++EA  +  ++++E    P+   Y+ L+T  C  G L    G ++K  
Sbjct: 398 TTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEKGC 457

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
              +G    TY+ L+    +A R E+A  LL  MV  G
Sbjct: 458 VPNIG----TYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%)

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           AD  TY +L+ G C+  R+E+A + L +MV  G      TY  V+ AL       +A KF
Sbjct: 9   ADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKF 68

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +     R++  +   +  L   L    R +EA  +L +M K+
Sbjct: 69  LEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK 110



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           S D   Y  L+   C    L      L KM  +    D  TY A++   C   R+ EA  
Sbjct: 8   SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL-FGSLGSKL 288
            L  M +   +    TY  ++  L + G   +AV   ++   R   + T + + SL S L
Sbjct: 68  FLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAV--ALLSKMRKKCVPTAVTYNSLISGL 125

Query: 289 IGLERFNEANFILKEM 304
              ER +EA  +L+EM
Sbjct: 126 CKAERASEAYDLLEEM 141


>gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 117/264 (44%), Gaps = 10/264 (3%)

Query: 52  ETVRYLLNKRARDCCF-NTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTL 109
           E   Y L K+  D  +  +   +N + N    L  L    R  A + +   P    Y TL
Sbjct: 258 EASEYFLWKKELDLSWVPSIRVYNIMLNGWFRLRKLKQGERLWAEMKENMRPTVVTYGTL 317

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           +   C+++++++AL +V  M + G   +AI ++PI+  L    R +EA G++E    + +
Sbjct: 318 VEGYCRMRRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEI 377

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            P  + YN L+  +C  G+L   S +LK M        A TY+       R  ++EE   
Sbjct: 378 GPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSATTYNYFFRYFSRCRKIEEGMN 437

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALL----RLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           L  +++  G +    TY H++  +L    +L    Q  K  M   G D+ L T     L 
Sbjct: 438 LYTKLIQSGYTPDRLTY-HLLVKMLCEEEKLDLAVQVSK-EMRHNGYDMDLATSTM--LV 493

Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
             L  + R  EA    ++M +R +
Sbjct: 494 HLLCKVRRLEEAFVEFEDMIRRGI 517



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 95/236 (40%), Gaps = 4/236 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   Y  LV      R +E    ++    ++     A  +N I +         +    
Sbjct: 309 PTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGM 368

Query: 93  LAR---LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           L R   L+ G P  S Y++L+   CK   +  A +++ +M   GF  SA T++      +
Sbjct: 369 LERFHVLEIG-PTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSATTYNYFFRYFS 427

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R +++EE   L   + +   +PD   Y+ L+   C +  L     V K+M       D  
Sbjct: 428 RCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDMDLA 487

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           T   LV   C+  R+EEAFV    M+  G    Y T+  +   L + G    A K 
Sbjct: 488 TSTMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQYLTFQRMKADLKKQGMTEMAQKL 543


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 125/275 (45%), Gaps = 7/275 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDL-ETVRYLLNKRARDCCFNTAN 71
           + Q++ +       G+ PD  T   Y+ L+N    E  L E +++L N  +  C  N   
Sbjct: 210 VGQAMKLLDEMRNKGSKPDVVT---YNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVI- 265

Query: 72  TFNFITNTENSLSVLSDLCRTLA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T N I  +  S     D  + L+  L KG  P    ++ LI  LC+   +  A+ +++ M
Sbjct: 266 THNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM 325

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   ++++++P+L    + K+M+ A   +++M      PD+  YN LLTA C  G +
Sbjct: 326 PMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKV 385

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +L ++  +       TY+ ++ G  + G+ E A  LL  M   G      TY+ +
Sbjct: 386 DVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSL 445

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +  L R G   +A+KF     G  I+ +   + S+
Sbjct: 446 VSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSI 480



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           +LI   C++ K  +A  V++I+ + G     IT++ ++S   +   ++ A   ++V+  +
Sbjct: 97  SLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNA---LQVLDRM 153

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            V+PD+  YN +L   C  G L     VL +  +++   D  TY  L+   C+   V +A
Sbjct: 154 NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQA 213

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             LL  M + G      TY  ++  + + G   +A+KF+
Sbjct: 214 MKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 252



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 25/308 (8%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           ++LR L     + Q++ V     +   +PD  T   Y  L+ A   E  +     LL++ 
Sbjct: 164 TILRTLCDSGKLKQAMEVLDRQLQKECYPDVIT---YTILIEATCKESGVGQAMKLLDEM 220

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTL 109
                     T+N + N          +C+   RLD+              P    ++ +
Sbjct: 221 RNKGSKPDVVTYNVLIN---------GICKE-GRLDEAIKFLNNMPSYGCQPNVITHNII 270

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           +  +C   +  +A +++  M   G   S +TF+ +++ L R   +  A  ++E M     
Sbjct: 271 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGC 330

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           +P+  +YN LL  +C +  +      L  M       D  TY+ L+   C+ G+V+ A  
Sbjct: 331 TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 390

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           +L ++   G S +  TY  V+  L ++G   +A+K +     + +K D   + SL S L 
Sbjct: 391 ILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLS 450

Query: 290 GLERFNEA 297
              + +EA
Sbjct: 451 REGKVDEA 458



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 83/167 (49%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y+TL+  LCK  K+D A+ +++ ++  G     IT++ ++  L++  + E A  
Sbjct: 366 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 425

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M+   + PD+  Y+ L++    +G +         +E   +  +A TY++++LG C
Sbjct: 426 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 485

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           ++ + + A   L  M+        +TY  ++  +   G   +A+  +
Sbjct: 486 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLL 532



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 124/298 (41%), Gaps = 14/298 (4%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN--- 71
           ++  V     +SGA PD  T   Y+ L++      +++    +L++       N A    
Sbjct: 110 KATWVMEILEQSGAVPDVIT---YNVLISGYCKSGEIDNALQVLDR------MNVAPDVV 160

Query: 72  TFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N I  T      L      L R    + +P    Y  LI   CK   + +A++++D M
Sbjct: 161 TYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM 220

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G     +T++ +++ + +  R++EA   +  M      P++  +N +L + C  G  
Sbjct: 221 RNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRW 280

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +L  M  +       T++ L+   CR G +  A  +L +M   G +    +Y  +
Sbjct: 281 MDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPL 340

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +    +     +A++++ +   R    D   + +L + L    + + A  IL +++ +
Sbjct: 341 LHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSK 398



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 6/210 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           P S  Y+ L++    E+ ++     L+      C+    T+N +      +  + V  ++
Sbjct: 332 PNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI 391

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
              L+   KG  P    Y+T+I  L K+ K + A++++D M   G     IT+  ++S L
Sbjct: 392 LNQLS--SKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 449

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           +R  +++EA      ++ + + P+   YN ++   C           L  M  ++     
Sbjct: 450 SREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 509

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            TY  L+ G    G  +EA  LL  +   G
Sbjct: 510 ATYTILIEGIAYEGLAKEALDLLNELCSRG 539



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           GK  +  W +ME++++    PD+  YN L++ YC  G +     VL +M    +  D  T
Sbjct: 106 GKTKKATW-VMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVT 161

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ ++   C +G++++A  +L R +         TY  ++ A  +     QA+K +    
Sbjct: 162 YNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 221

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  K D   +  L + +    R +EA   L  M
Sbjct: 222 NKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM 255



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L R   +E+ +  +E M      PD+     L+  +C  G     + V++ +E+     D
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             TY+ L+ G C++G ++ A  +L RM      V Y+T   ++  L   G   QA++ +
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNT---ILRTLCDSGKLKQAMEVL 182


>gi|222631493|gb|EEE63625.1| hypothetical protein OsJ_18442 [Oryza sativa Japonica Group]
          Length = 390

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 71/138 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  LC   ++ EAL V+D+M E G   +A T+ PI+     G R+ EA  L
Sbjct: 8   PDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M     +P    YN L+ A C  G       +L++   +    D  TY + + G C+
Sbjct: 68  LNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCK 127

Query: 221 AGRVEEAFVLLRRMVDDG 238
           AGR++++F L+ +M+ +G
Sbjct: 128 AGRIDKSFALVDKMLSNG 145



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V+PD+  Y+ L++  C  G +    GVL  M EE    +A TY  +V   C  GR+ EA 
Sbjct: 6   VAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAK 65

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
            LL  M+  G +   +TY  ++ AL ++G + +
Sbjct: 66  RLLNTMIASGFAPSTATYNVLVEALCKVGAFEE 98



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 54/129 (41%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G     +T+  ++S L    ++ EA G++++M E    P+   Y  ++ AYC  G 
Sbjct: 1   MVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGR 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +     +L  M          TY+ LV   C+ G  EE   LL      G +    TY+ 
Sbjct: 61  IHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSS 120

Query: 249 VMGALLRLG 257
            M  L + G
Sbjct: 121 YMDGLCKAG 129



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 2/203 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  Y  +V+A      +   + LLN         +  T+N +      +    ++  
Sbjct: 42  QPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDA 101

Query: 92  TLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L     KG+ P    Y + +  LCK  +ID++  +VD M   G   S +T + +L  + 
Sbjct: 102 LLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVC 161

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R      A  L+E   E+    ++  YN ++   C +    +   +   M ++ +  ++ 
Sbjct: 162 RSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSW 221

Query: 210 TYDALVLGACRAGRVEEAFVLLR 232
           T++ +V   C+ GR+ +A  LLR
Sbjct: 222 TFNIVVHSLCKLGRLHKALFLLR 244



 Score = 37.7 bits (86), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 45/109 (41%)

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M    +  D  TY  L+ G C AG+V EA  +L  M+++G      TY  ++ A    G 
Sbjct: 1   MVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGR 60

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +A + +           T  +  L   L  +  F E + +L+E   +
Sbjct: 61  IHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAK 109


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 135/318 (42%), Gaps = 25/318 (7%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SL++ L     + Q+++        G  PD  T   Y  +++A   E  L   R  L + 
Sbjct: 16  SLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYT---YTAVIHALCVENRLHEARKFLEEM 72

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-----------KGFPRKSAYDTLI 110
           A     N   T N +T T     ++  LC+   R+D           K  P    Y++LI
Sbjct: 73  A-----NRNLTPNVVTYT----VLIDGLCKG-GRVDEAVALLSKMRKKCVPTAVTYNSLI 122

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
             LCK ++  EA  +++ M   G      T+  +++   + K+ ++A  + E +      
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGACRAGRVEEAFV 229
           PD+  Y+ L+   C +G L     +  +M +      +  TY++L+ G CR G+++EA  
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           LL RM + G S    TY  +M    +L     A   +     + +  D   F SL   L 
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 290 GLERFNEANFILKEMNKR 307
              R ++A  IL EM ++
Sbjct: 303 RENRLSDAVHILGEMRRK 320



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 2/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK  ++DEA+ ++  M +     +A+T++ ++S L + +R  EA+ L
Sbjct: 79  PNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP-TAVTYNSLISGLCKAERASEAYDL 137

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M      PD+  Y  L+T +C          V +++       D  TY  L+ G C+
Sbjct: 138 LEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCK 197

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYS-TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            GR++EA  L  RM+  G  +  + TY  ++    R+G   +A+  +          D  
Sbjct: 198 EGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVV 257

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + +L +    L R ++A  +L +M ++ L
Sbjct: 258 TYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 104/205 (50%), Gaps = 2/205 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y++LI   C++ K+DEA+ +++ MAE G     +T+  +++   +  R+++A+ 
Sbjct: 218 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 277

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M    ++PD+  +  L+   C +  L+    +L +M  +       TY+ ++ G C
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 337

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           RA ++EEA   +   +D   +V+  ++  ++  L ++   ++A++ V     R    D  
Sbjct: 338 RANQLEEARKFMLEEMDCPPNVV--SFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVV 395

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
           ++ ++   L   ++ +EA  + ++M
Sbjct: 396 MYTTVIDGLCREKKVDEACRVYRKM 420



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 1/192 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y +LI  LCK+K++++AL  +  M   GF     T+  ++  L    R+ EA   +E M 
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMA 73

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++P++  Y  L+   C  G +     +L KM  +K    A TY++L+ G C+A R  
Sbjct: 74  NRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERAS 132

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA+ LL  MV  G      TY  ++    +      A++       R  + D   +  L 
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 286 SKLIGLERFNEA 297
             L    R  EA
Sbjct: 193 DGLCKEGRLKEA 204



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 112/247 (45%), Gaps = 25/247 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ L++       ++    LL + A      T ++ + +T T    ++++  C+ 
Sbjct: 219 PNTVTYNSLISGFCRMGKMDEAMNLLERMA-----ETGSSPDVVTYT----TLMNGFCK- 268

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           LARLD  +            P    + +L+  LC+  ++ +A+ ++  M       +  T
Sbjct: 269 LARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT 328

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ IL    R  ++EEA   M  ++E+   P++ ++N ++   C     +    ++++  
Sbjct: 329 YNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 386

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS-TYAHVMGALLRLGYY 259
             +   D   Y  ++ G CR  +V+EA  + R+M+++   +  S TY+ ++  L   G  
Sbjct: 387 RRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGML 446

Query: 260 AQAVKFV 266
            +A  ++
Sbjct: 447 DRARGYI 453



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 8/208 (3%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
             ++G+ PD  T   Y  L+N       L+    LLN+  R        TF  + +    
Sbjct: 247 MAETGSSPDVVT---YTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR 303

Query: 83  LSVLSDLCRTLA--RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            + LSD    L   R     P    Y+T++   C+  +++EA +   ++ E     + ++
Sbjct: 304 ENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF--MLEEMDCPPNVVS 361

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM- 199
           F+ ++  L +  R  EA  L+E  +  R +PD+  Y  ++   C +  +     V +KM 
Sbjct: 362 FNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKML 421

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEA 227
           EE     ++ TY  LV G C AG ++ A
Sbjct: 422 EEPGCLPNSITYSTLVTGLCNAGMLDRA 449



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
             T+ G  PD  T   +  L++    E  L    ++L +  R  C  T  T+N I +   
Sbjct: 281 QMTRKGLTPDVVT---FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 337

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
             + L +  + +       P   +++ +I  LCK+ +  EA+ +V+           + +
Sbjct: 338 RANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 397

Query: 142 HPILSVLTRGKRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
             ++  L R K+++EA  +  ++++E    P+   Y+ L+T  C  G L    G ++K  
Sbjct: 398 TTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEKGC 457

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
              +G    TY+ L+    +A R E+A  LL  MV  G  V+ S
Sbjct: 458 VPNIG----TYNLLIDAFRKANRDEDARELLDDMVQRGFGVVQS 497



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T+  ++  L + KR+E+A   +  M      PD+  Y  ++ A C +  L      L++
Sbjct: 12  VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           M    L  +  TY  L+ G C+ GRV+EA  LL +M
Sbjct: 72  MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107



 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%)

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           AD  TY +L+ G C+  R+E+A + L +MV  G      TY  V+ AL       +A KF
Sbjct: 9   ADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKF 68

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +     R++  +   +  L   L    R +EA  +L +M K+
Sbjct: 69  LEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK 110



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 1/135 (0%)

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           S D   Y  L+   C    L      L KM  +    D  TY A++   C   R+ EA  
Sbjct: 8   SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
            L  M +   +    TY  ++  L + G   +AV  +     + +      + SL S L 
Sbjct: 68  FLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVT-YNSLISGLC 126

Query: 290 GLERFNEANFILKEM 304
             ER +EA  +L+EM
Sbjct: 127 KAERASEAYDLLEEM 141


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 86/185 (46%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    + T++  LCK   I  A  VVD+M + G     +T+  ++        M+EA
Sbjct: 703 KIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEA 762

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + + M      P++ +YN L+  YC    +    G+L++M  + L AD  TY+ L+ G
Sbjct: 763 VKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHG 822

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR++ A  L   MV  GQ     TY  ++  L +  + A+A+  +    G ++  D
Sbjct: 823 LCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDAD 882

Query: 278 TELFG 282
             ++ 
Sbjct: 883 ILVYN 887



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 13/237 (5%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           V++ LC  L R+D  F            P  + + TLI  LC   KI EAL + D M   
Sbjct: 86  VINSLCH-LNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 144

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           GF  + +T+  +++ L + +++ EA+ +   M    +SP++  YN L+   C        
Sbjct: 145 GFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHV 204

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + ++ +M + K+  D  T + +V   C+ G V EA  ++  M+  G      TY  +M  
Sbjct: 205 TTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDG 264

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                    AVK       +D   +   + +L +    ++  ++A ++ +EM++++L
Sbjct: 265 HCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 321



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI   C+++++D+A+ +++ M+  G     +T++ ++  L    R++ A  L
Sbjct: 776 PNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIAL 835

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PDL  Y  LL   C   +L     +LK +E   L AD   Y+  + G CR
Sbjct: 836 FHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCR 895

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           AG +E A  L   +   G      TY  ++  L + G   +A K 
Sbjct: 896 AGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKL 940



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+TLI   CK++ +D+A+ + + M+      + +T++ ++  L    R+++A  L   M
Sbjct: 292 SYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEM 351

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 PDL  Y  L    C   +L     +LK +E      D + Y  ++ G CRAG +
Sbjct: 352 VARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGEL 411

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           E+A  L   +   G      TY  ++  L + G  A+A K 
Sbjct: 412 EDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKL 452



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 86/187 (45%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P     +T++  LCK   + EA  VVD+M   G   + +T++ ++        ++ A
Sbjct: 215 KIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVA 274

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + + M       ++ +YN L+  YC   ++     + ++M  ++L  +  TY+ L+ G
Sbjct: 275 VKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHG 334

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR+++A  L   MV  GQ     TY  +   L +  +  +A+  +    G +   D
Sbjct: 335 LCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPD 394

Query: 278 TELFGSL 284
            +++ ++
Sbjct: 395 IQIYTTI 401



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 69/155 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LC + ++ +A+ +   M   G     +T+  +   L + + +++A  L
Sbjct: 323 PNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMAL 382

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ ++     PD+  Y  +L   C  G L     +   +  + L  +  TY+ ++ G C+
Sbjct: 383 LKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK 442

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G + EA  L   M  +G S    TY  +    LR
Sbjct: 443 QGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLR 477



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 119/287 (41%), Gaps = 9/287 (3%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSL 83
           G  PD  T   Y+ L++A  +  + + V  LLN+            F+ + +    E  +
Sbjct: 668 GISPDIFT---YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMI 724

Query: 84  SVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           ++  D+   + +  +G  P    Y  L+   C   ++DEA++V D M   G   +  +++
Sbjct: 725 AIAHDVVDMMIK--RGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYN 782

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +++   + +RM++A GL+E M    +  D   YN L+   C  G L     +  +M   
Sbjct: 783 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVAS 842

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
               D  TY  L+   C+   + EA VLL+ +           Y   +  + R G    A
Sbjct: 843 GQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAA 902

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                    + ++ D   +  +   L      +EAN + ++M++ D+
Sbjct: 903 RDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDI 949



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 96/232 (41%), Gaps = 3/232 (1%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL- 96
           Y+ L+N     + ++   YL  + +R        T+N + +    +  L D       + 
Sbjct: 293 YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMV 352

Query: 97  DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
            +G  P    Y TL   LCK + +D+A+ ++  +    +      +  IL  + R   +E
Sbjct: 353 ARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELE 412

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  L   +    + P++  YN ++   C +G L   S +  +M +     +  TY+ + 
Sbjct: 413 DARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLIT 472

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
            G  R         LL  M+  G SV  ST   ++G L   G   Q+VK ++
Sbjct: 473 RGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG-LDQSVKQIL 523



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 78/202 (38%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
            S+++T   +      +DEAL   + M       S + F+ +L+ + + K       L  
Sbjct: 10  SSSHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSR 69

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M    + PD+     ++ + C    +      L K+ +     DA T+  L+ G C  G
Sbjct: 70  QMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEG 129

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           ++ EA  L  +M+ +G      TY  ++  L +     +A         + I  +   + 
Sbjct: 130 KIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYN 189

Query: 283 SLGSKLIGLERFNEANFILKEM 304
           SL   L  L  +     ++ EM
Sbjct: 190 SLIHGLCKLCEWKHVTTLMNEM 211



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 3/200 (1%)

Query: 68  NTANTFNFITNTENSL-SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126
           ++ NTF+      N+L   LS   R L +  +  P    ++ L+  + K K     L + 
Sbjct: 11  SSHNTFHSKPLHFNTLDEALSTFNRMLHK--QPPPSTVDFNRLLTSIAKTKHHSTLLSLS 68

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   G      T   +++ L    R++ A+  +  + ++   PD T +  L+   C +
Sbjct: 69  RQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVE 128

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G +     +  KM  E    +  TY  L+ G C+  +V EAF +   M+  G S    TY
Sbjct: 129 GKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTY 188

Query: 247 AHVMGALLRLGYYAQAVKFV 266
             ++  L +L  +      +
Sbjct: 189 NSLIHGLCKLCEWKHVTTLM 208



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 15/235 (6%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T N + N+   L  L      LA+L K GF P    Y TL+  LCK             M
Sbjct: 618 TLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK-------------M 664

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G      T++ ++  L      +    L+  M   ++ P++  ++ ++ A C +G +
Sbjct: 665 ITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMI 724

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                V+  M +  +  D  TY AL+ G C    ++EA  +   MV  G      +Y  +
Sbjct: 725 AIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNIL 784

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +    ++    +A+  +     + +  DT  + +L   L  + R   A  +  EM
Sbjct: 785 INGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEM 839



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/111 (19%), Positives = 49/111 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  L+  LCK   + EA+ ++  +         + ++  +  + R   +E A  
Sbjct: 845 IPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARD 904

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           L   +    + PD+  YN ++   C +G L   + + +KM+E  + +++ +
Sbjct: 905 LFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTS 955



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+AL   + M       S + F  +L+ + + K       L   M    + PD+   N 
Sbjct: 562 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 621

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+ ++C    L     VL K+ +     D  TY  L+ G C             +M+  G
Sbjct: 622 LINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC-------------KMITKG 668

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            S    TY  ++ AL  L  +      +
Sbjct: 669 ISPDIFTYNSLIHALCNLCEWKHVTTLL 696


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 3/215 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR-ME 155
           D  +   S +D ++    +L  ID+AL +V +    GF    ++++ +L    R KR + 
Sbjct: 128 DLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNIS 187

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  + + M E +VSP++  YN L+  +CF GN+     +  KME +    +  TY+ L+
Sbjct: 188 FAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLI 247

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-CGGRDI 274
            G C+  ++++ F LLR M   G      +Y  V+  L R G   + V FV+     R  
Sbjct: 248 DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKE-VSFVLTEMNRRGY 306

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            LD   + +L         F++A  +  EM +  L
Sbjct: 307 SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL 341



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 96/205 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C    ID AL + D M   G   + +T++ ++    + +++++ + L
Sbjct: 203 PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKL 262

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    + P+L +YN ++   C +G +   S VL +M       D  TY+ L+ G C+
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCK 322

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G   +A V+   M+  G +    TY  ++ ++ + G   +A++F+     R +  +   
Sbjct: 323 EGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERT 382

Query: 281 FGSLGSKLIGLERFNEANFILKEMN 305
           + +L          NEA  +L+EMN
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLREMN 407



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 85/165 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y TL+    +   ++EA RV+  M + GF  S +T++ +++      +ME+A  +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E MKE  +SPD+ +Y+ +L+ +C   ++     V ++M E+ +  D  TY +L+ G C 
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             R +EA  L   M+  G      TY  ++ A    G   +A++ 
Sbjct: 498 QRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 17/225 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLS 84
           EP    Y+ ++N    E  ++ V ++L +  R        T+N +        N   +L 
Sbjct: 272 EPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALV 331

Query: 85  VLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           + +++ R       G  P    Y +LI  +CK   ++ A+  +D M   G   +  T+  
Sbjct: 332 MHAEMLR------HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++   ++   M EA+ ++  M +   SP +  YN L+  +C  G +     VL+ M+E+ 
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
           L  D  +Y  ++ G CR+  V+EA  + R MV+ G    ++ YS+
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSS 490



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 77/165 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI   CKL+KID+  +++  MA  G   + I+++ +++ L R  RM+E   
Sbjct: 237 LPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF 296

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M     S D   YN L+  YC +GN      +  +M    L     TY +L+   C
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMC 356

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +AG +  A   L +M   G      TY  ++    + GY  +A +
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           VL+++ R    LD+       Y+TLI   CK     +AL +   M   G   S IT+  +
Sbjct: 297 VLTEMNRRGYSLDE-----VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL 351

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  + +   M  A   ++ M+   + P+   Y  L+  +  KG +     VL++M +   
Sbjct: 352 IHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF 411

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
                TY+AL+ G C  G++E+A  +L  M + G S    +Y+ V+    R     +A++
Sbjct: 412 SPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALR 471

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                  + IK DT  + SL        R  EA  + +EM
Sbjct: 472 VKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEM 511



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 15/153 (9%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y  LI   C    +++AL++ + M E G     +T+  +++ L +  R  EA  L
Sbjct: 518 PDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRL 577

Query: 161 M-EVMKEIRVSPDLTAYNY--------------LLTAYCFKGNLTATSGVLKKMEEEKLG 205
           + ++  E  V  D+T +                L+  +C KG +T    V + M  +   
Sbjct: 578 LLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHK 637

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            D   Y+ ++ G CRAG + +A+ L + MV  G
Sbjct: 638 PDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 80/204 (39%), Gaps = 25/204 (12%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           + G  PDE T   Y  L+NA   E DLE    L N+           T++ + N  N  S
Sbjct: 513 RVGLPPDEFT---YTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569

Query: 85  VLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
              +  R L +L  ++  P    Y TLI     +    E   VV ++   GF +  +   
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVTYHTLIENCSNI----EFKSVVSLIK--GFCMKGM--- 620

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
                      M EA  + E M      PD TAYN ++  +C  G++     + K+M + 
Sbjct: 621 -----------MTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKS 669

Query: 203 KLGADARTYDALVLGACRAGRVEE 226
                  T  ALV    + G+V E
Sbjct: 670 GFLLHTVTVIALVKALHKEGKVNE 693


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 80/163 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LCK+K++DEAL + + + +       +T+  ++  L +  R+   W L
Sbjct: 336 PDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDL 395

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +    PD+  YN L+ A C  G+L     +  KM+++ +  +  T+  L+ G C+
Sbjct: 396 FDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCK 455

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR++ A    + ++  G  +   TY  ++  L + G   +A+
Sbjct: 456 VGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEAL 498



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 96/205 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI  +CK+ +   A+R++  +       + + +  I+  L +   ++EA+ L   M
Sbjct: 165 SYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEM 224

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               +SPD+  Y+ L++ +C  G L     +L +M  E +  D  TY  LV   C+ G+V
Sbjct: 225 VGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKV 284

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA  +L  MV    ++    Y+ +M     +     A +         +  D   +  +
Sbjct: 285 KEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIM 344

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            + L  ++R +EA  + +E++++++
Sbjct: 345 INGLCKIKRVDEALNLFEEIHQKNM 369



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 87/197 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK  K+ EA  V+ +M +    L  + +  ++        +  A  +
Sbjct: 266 PDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRV 325

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M ++ V+PD+  Y+ ++   C    +     + +++ ++ +  D  TY +L+   C+
Sbjct: 326 FYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCK 385

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+   + L   M+D GQ     TY +++ AL + G+  +A+        + I+ +   
Sbjct: 386 SGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYT 445

Query: 281 FGSLGSKLIGLERFNEA 297
           F  L   L  + R   A
Sbjct: 446 FTILLDGLCKVGRLKNA 462



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 8/190 (4%)

Query: 76  ITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           +   EN L+V+   C  L  +         Y TL+   C + +++ A RV   M + G  
Sbjct: 284 VKEAENVLAVMVKACVNLDVV--------VYSTLMDGYCLVNEVNNAKRVFYTMTQMGVT 335

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
                +  +++ L + KR++EA  L E + +  + PD   Y  L+   C  G ++    +
Sbjct: 336 PDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDL 395

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             +M +     D  TY+ L+   C+ G ++ A  L  +M D        T+  ++  L +
Sbjct: 396 FDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCK 455

Query: 256 LGYYAQAVKF 265
           +G    A++F
Sbjct: 456 VGRLKNALEF 465



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 2/196 (1%)

Query: 91  RTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           R L R+++    P    Y  +I RLCK   +DEA  +   M   G     +T+  ++S  
Sbjct: 184 RLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGF 243

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
               ++  A  L+  M    ++PD+  Y  L+ A C +G +     VL  M +  +  D 
Sbjct: 244 CIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDV 303

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
             Y  L+ G C    V  A  +   M   G +     Y+ ++  L ++    +A+     
Sbjct: 304 VVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEE 363

Query: 269 CGGRDIKLDTELFGSL 284
              +++  DT  + SL
Sbjct: 364 IHQKNMVPDTVTYTSL 379



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 6/167 (3%)

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT-ATSGVLKKM 199
           F+ IL  L   KR   A  L + M+   V PD    N ++  +C  G +  A SGV K +
Sbjct: 61  FNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKIL 120

Query: 200 EEEKLG--ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              KLG   +  T + L+ G C  G+V+EA     +++  G  +   +Y  ++  + ++G
Sbjct: 121 ---KLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIG 177

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
               A++ +       I+ +  ++  +  +L      +EA  +  EM
Sbjct: 178 ETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEM 224


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 115/239 (48%), Gaps = 5/239 (2%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           N+F  +   + +LSVL+ + +   +     P  + + TL+  LC + KI EAL V D M 
Sbjct: 99  NSFCHLNRVDFALSVLAKILKLGHQ-----PDTATFTTLVRGLCVVGKIGEALDVFDKMV 153

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             GF  + +T+  +++ L + +++ EA  L   M    +SPD+  YN L+ A C      
Sbjct: 154 GEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWK 213

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
             + +L +M + K+  +  + + +V   C+ G+V EA  ++  M+  G      TYA +M
Sbjct: 214 HVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALM 273

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                     +AVK   +        +   + +L +    ++R ++A ++ +EM +++L
Sbjct: 274 DGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQEL 332



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 109/242 (45%), Gaps = 12/242 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
           EP    Y  L++      +++    + +   R+ C     ++N + N        + ++ 
Sbjct: 263 EPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMY 322

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +  ++CR      +  P    Y TLI  LC + ++ +A+ + + M   G   + +T+  +
Sbjct: 323 LFEEMCR-----QELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSIL 377

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L  L +  R+ EA  L++ ++   + PD+  YN  +   C  G+L A   +   +    L
Sbjct: 378 LDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGL 437

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  T++ ++ G C+ G ++EA  L R M ++G      TY  +   LL+    ++A++
Sbjct: 438 QPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQ 497

Query: 265 FV 266
            +
Sbjct: 498 LL 499



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 110/252 (43%), Gaps = 2/252 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  L+N    +R L     L ++           T+N + +   +L     +  
Sbjct: 158 QPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTT 217

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  + K    P   + + ++  LCK  K+ EA  VVD+M +GG     +T+  ++    
Sbjct: 218 LLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHC 277

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               M+EA  + ++M       ++ +YN L+  YC    +     + ++M  ++L  +  
Sbjct: 278 LRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTM 337

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C  GR+++A  L   MV  GQ     TY+ ++  L +    A+A+  +   
Sbjct: 338 TYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAI 397

Query: 270 GGRDIKLDTELF 281
            G ++  D +++
Sbjct: 398 EGSNLDPDVQVY 409



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 67/169 (39%)

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  +L+ + + K       L + M    + PD+     ++ ++C    +     VL K+ 
Sbjct: 59  FAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKIL 118

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           +     D  T+  LV G C  G++ EA  +  +MV +G      TY  +M  L +     
Sbjct: 119 KLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLT 178

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +A+        + I  D   + SL   L  L  +     +L EM K  +
Sbjct: 179 EALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKI 227



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 85/222 (38%), Gaps = 22/222 (9%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y+ L+N     + ++   YL  +  R            I NT    +++  LC  + RL 
Sbjct: 304 YNTLINGYCKIQRIDKAMYLFEEMCRQ---------ELIPNTMTYSTLIHGLCH-VGRLQ 353

Query: 98  KGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
                          P    Y  L+  LCK  ++ EA+ ++  +           ++  +
Sbjct: 354 DAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAI 413

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             + R   +E A  L   +    + PD+  +N ++   C +G L   S + ++M+E    
Sbjct: 414 DGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCL 473

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            +  TY+ +  G  +  +   A  LL  M+  G S   ST A
Sbjct: 474 RNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTA 515



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 79/202 (39%), Gaps = 9/202 (4%)

Query: 74  NFITNTENSL-------SVLSDLCRTLARLDKGFPRKSAYD--TLIGRLCKLKKIDEALR 124
           +F+++++N+        + L D   +  R+    P    ++   L+  + K+K     L 
Sbjct: 18  HFLSSSQNNFQSKSLHFNTLDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLS 77

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +   M   G      T   +++      R++ A  ++  + ++   PD   +  L+   C
Sbjct: 78  LSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLC 137

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
             G +     V  KM  E    +  TY  L+ G C+  ++ EA  L   M+  G S    
Sbjct: 138 VVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIF 197

Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
           TY  ++ AL  L  +      +
Sbjct: 198 TYNSLIHALCNLCEWKHVTTLL 219


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 125/324 (38%), Gaps = 59/324 (18%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
            FP  P   YY+ L+N    E  +   + + N+  +     T  +FN         ++++
Sbjct: 218 GFP--PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFN---------TLIN 266

Query: 88  DLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
            LC++   LD+GF            P    Y  LI  LCK  ++D A ++ D M + G  
Sbjct: 267 GLCKS-RNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLR 325

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA------------- 182
            + ITF  ++    R +R++ A      M  + V PDL  YN LL               
Sbjct: 326 PNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL 385

Query: 183 ----------------------YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                                 YC +G+L +   + K M EE +  D   + AL+ G CR
Sbjct: 386 VDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCR 445

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV +A   LR MV+ G     +TY  V+    + G      K +        K     
Sbjct: 446 DGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVIT 505

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L + L    +   AN +L+ M
Sbjct: 506 YNVLMNGLCKQGQMKNANMLLEAM 529



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 89/172 (51%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ GFP K   Y+ LI + CK   I +A  + + + + G   + ++F+ +++ L + + +
Sbjct: 215 LEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNL 274

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L + M+E R+ PD+  Y+ L+   C +G L     +  +M++  L  +  T+ AL
Sbjct: 275 DEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTAL 334

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G CR+ R++ A     +M+  G       Y  ++  L ++G   +A K V
Sbjct: 335 IDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLV 386



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 68/138 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI   CK   ++ A+ +   M E G  L  + F  ++S   R  R+ +A   
Sbjct: 396 PDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERT 455

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  + PD   Y  ++  YC KGN+     +LK+M+         TY+ L+ G C+
Sbjct: 456 LREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCK 515

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G+++ A +LL  M++ G
Sbjct: 516 QGQMKNANMLLEAMLNLG 533



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  +I   CK   +    +++  M   G     IT++ +++ L +  +M+ A  L
Sbjct: 466 PDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANML 525

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +E M  + V+PD   YN LL  +C  G       +LK   E+ L  D   Y +LV
Sbjct: 526 LEAMLNLGVTPDDITYNILLEGHCKNG---KAEDLLKLRNEKGLIVDYAYYTSLV 577



 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 20/100 (20%), Positives = 46/100 (46%)

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           W     + E    P +  YN L+  +C +G++     +  ++ +  L     +++ L+ G
Sbjct: 208 WTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLING 267

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            C++  ++E F L + M ++       TY+ ++  L + G
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEG 307


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 116/269 (43%), Gaps = 2/269 (0%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y +L++     R ++    L ++   D C+ T  T+  I      L   ++       + 
Sbjct: 277 YTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMT 336

Query: 98  KGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +    P    Y  LI  LC+    D+A ++++ M E G   S +T++ ++    +     
Sbjct: 337 EKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSA 396

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  ++ +M+    SP+   YN L+  +C   N+     +L KM E KL  +  TY+ L+
Sbjct: 397 SALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILI 456

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G C+ G +  A+ LL  M + G      TY+  +  L + G   +A         + IK
Sbjct: 457 HGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIK 516

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  ++ +L      + + ++  F+L +M
Sbjct: 517 ANEVIYSTLIDGYCKVGKVSDGRFLLDKM 545



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 123/280 (43%), Gaps = 12/280 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
           +P    Y  L+ +   + + +  + +LN         +  T+N + +       + ++L 
Sbjct: 341 QPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALE 400

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +LS     L   +   P    Y+ LI   C+ K I +A+ ++  M E     + +T++ +
Sbjct: 401 ILS-----LMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNIL 455

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   +  A+ L+ +M E  + PD   Y+  +   C +G +     + + ++E+ +
Sbjct: 456 IHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGI 515

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            A+   Y  L+ G C+ G+V +   LL +M+  G      TY  ++    +   + +A  
Sbjct: 516 KANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARL 575

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            V +   RDI+   + +  L   L+  + F++A+ +  +M
Sbjct: 576 LVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQM 615



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI   CK K   EA  +VDIM +     +A T+  ++  L +    ++A  +
Sbjct: 552 PNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDM 611

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      PD+  Y   + AYC  G L     ++ KM  + +  D   Y   +    R
Sbjct: 612 FDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGR 671

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            G ++ AF +L+RM + G    Y TY+ ++  L
Sbjct: 672 FGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHL 704



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 1/164 (0%)

Query: 93  LARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L+  +KG  R   +Y  LI   C+ +++DEAL++   M E     +  T+  I+  L + 
Sbjct: 263 LSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQL 322

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            R  EA  + + M E    P++  Y  L+ + C   N      +L  M E+ L     TY
Sbjct: 323 GRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTY 382

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +AL+ G C+ G    A  +L  M  +  S    TY  ++    R
Sbjct: 383 NALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCR 426



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 86/206 (41%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y +LI   C+ K +D A  +   M   G   + +++  ++      +R++EA  L   M
Sbjct: 241 TYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQM 300

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E    P +  Y  ++ A C  G  T    + K+M E+    +  TY  L+   C     
Sbjct: 301 HEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNF 360

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++A  +L  M++ G      TY  ++    + G  A A++ + +    +   +   +  L
Sbjct: 361 DDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNEL 420

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
                  +  ++A  +L +M +R L+
Sbjct: 421 ILGFCRGKNIHKAMSLLHKMLERKLQ 446



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/300 (19%), Positives = 116/300 (38%), Gaps = 42/300 (14%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           P S  Y+ L++    E++ +  R L++   +      A+T+  + +    ++      D+
Sbjct: 552 PNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDM 611

Query: 90  CRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
              +  L  G  P    Y   I   C   ++ +A  ++  M   G     + +   +   
Sbjct: 612 FDQM--LSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAY 669

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT--------------------------- 181
            R   ++ A+G+++ M E+   P    Y+ L+                            
Sbjct: 670 GRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASND 729

Query: 182 -AYCFKG-NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
            + C++  +   T  +  KM E     +A TY   + G C+ G +E A  L   M + GQ
Sbjct: 730 FSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQ 789

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS-KLIGLERFNEAN 298
           S     Y  ++G   +LG Y +A++++      DI ++      L S KL+    ++E N
Sbjct: 790 SPNEDIYNSLLGCSCQLGLYGEAIRWL------DIMIENRHLPHLDSCKLLLCGLYDEGN 843



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 65/166 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     +T++   CKL  + EA   V  + + G  L   T+  ++    R K ++ A  +
Sbjct: 202 PNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAI 261

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M       +  +Y  L+  +C    +     +  +M E+      RTY  ++   C+
Sbjct: 262 FLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQ 321

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            GR  EA  + + M +        TY  ++ +L     +  A K +
Sbjct: 322 LGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKIL 367



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 3/149 (2%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI   CK+ K+ +   ++D M   G   ++IT++ ++    + K  +EA  L+++M 
Sbjct: 522 YSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMI 581

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  + P    Y  L+              +  +M       D   Y A +   C  GR++
Sbjct: 582 KRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLK 641

Query: 226 EAFVLLRRMVDDG---QSVLYSTYAHVMG 251
           +A VL+ +M   G    ++LY+ +    G
Sbjct: 642 DAEVLICKMNAKGIMPDTMLYTLFIDAYG 670



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 35/211 (16%)

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
           F L+   ++ +L +L+R   ++E   +   M +  V+P++   N ++  YC  GN+    
Sbjct: 165 FKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAE 224

Query: 194 GVLKKMEEEKLGADARTYDALVLGACR--------------------------------- 220
             + K+ +  L  D  TY +L+LG CR                                 
Sbjct: 225 LYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGF 284

Query: 221 --AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
             A RV+EA  L  +M +D       TY  ++ AL +LG   +A+        +  + + 
Sbjct: 285 CEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNV 344

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             +  L   L     F++A  IL  M ++ L
Sbjct: 345 HTYTVLICSLCEDSNFDDAKKILNGMLEKGL 375



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/277 (18%), Positives = 105/277 (37%), Gaps = 12/277 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y++L+      +++     LL+K           T+N + + +     L    + 
Sbjct: 412 PNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKL 471

Query: 93  LARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L+ +++    P +  Y   I  LCK   ++EA  + + + E G   + + +  ++    +
Sbjct: 472 LSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCK 531

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++ +   L++ M      P+   YN L+  YC + N      ++  M +  +   A T
Sbjct: 532 VGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADT 591

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  L+    +    ++A  +  +M+  G       Y   + A    G    A   +    
Sbjct: 592 YTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMN 651

Query: 271 GRDIKLDTEL----------FGSLGSKLIGLERFNEA 297
            + I  DT L          FGS+      L+R +E 
Sbjct: 652 AKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEV 688



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 4/164 (2%)

Query: 55  RYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIG 111
           R+LL+K     C   + T+N + +    E +      L   + + D   P    Y  LI 
Sbjct: 539 RFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIE-PAADTYTILID 597

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
            L K  + D+A  + D M   G       +   +       R+++A  L+  M    + P
Sbjct: 598 NLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMP 657

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           D   Y   + AY   G++    G+LK+M E        TY  L+
Sbjct: 658 DTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLI 701


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 93/206 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     ++L+   C   +I EA+ +VD M E G+    +TF  ++  L +  +  EA  L
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M      PDL  Y  ++   C +G       +L KME+ K+ AD   Y+ ++ G C+
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCK 262

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +++AF L  +M   G      TY  ++  L   G ++ A + +     ++I  D   
Sbjct: 263 YKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVF 322

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           F +L    +   +  EA  +  EM K
Sbjct: 323 FNALIDAFVKEGKLVEAEKLYDEMVK 348



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP   AY+TLI   CK K+++E + V   M++ G   + +T+  ++    + +  + A  
Sbjct: 353 FPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 412

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    V PD+  YN LL   C  GN+     V + M++  +  D  TY  ++   C
Sbjct: 413 VFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALC 472

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +AG+VE+ + L   +   G      TY  +M    R G   +A
Sbjct: 473 KAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 515



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 21/217 (9%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T+I  LCK K +D+A  + + M   G      T++P++S L    R  +A  L+  M 
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK-LGADARTYDALVLGACRAGRV 224
           E  ++PDL  +N L+ A+  +G L     +  +M + K    D   Y+ L+ G C+  RV
Sbjct: 313 EKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRV 372

Query: 225 EEAFVLLRRMVDD---GQSVLYSTYAHVMGALLRLGYY-------AQAVKFVMVCGGRDI 274
           EE   + R M      G +V Y+T  H        G++       AQ V   MV  G  +
Sbjct: 373 EEGMEVFREMSQRGLVGNTVTYTTLIH--------GFFQARDCDNAQMVFKQMVSDG--V 422

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
             D   +  L   L        A  + + M KRD+K+
Sbjct: 423 HPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKL 459



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 1/185 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC   +  +A R++  M E       + F+ ++    +  ++ EA  L
Sbjct: 283 PDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKL 342

Query: 161 M-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             E++K     PD+ AYN L+  +C    +     V ++M +  L  +  TY  L+ G  
Sbjct: 343 YDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFF 402

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +A   + A ++ ++MV DG      TY  ++  L   G    A+        RD+KLD  
Sbjct: 403 QARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIV 462

Query: 280 LFGSL 284
            + ++
Sbjct: 463 TYTTM 467



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/231 (19%), Positives = 97/231 (41%), Gaps = 5/231 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           ++++ +  D+ ++     + FP    +  L+  + K+ K D  + + + M   G   +  
Sbjct: 57  DDAIGLFGDMVKS-----RPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLY 111

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+   ++   R  ++  A  ++  M ++   P +   N LL  +C    ++    ++ +M
Sbjct: 112 TYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 171

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            E     D  T+  LV G  +  +  EA  L+ RMV  G      TY  V+  L + G  
Sbjct: 172 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 231

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             A+  +       I+ D  ++ ++   L   +  ++A  +  +M  + +K
Sbjct: 232 DLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIK 282



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 70/157 (44%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y+ L+  LC    ++ AL V + M +    L  +T+  ++  L +  ++E+
Sbjct: 420 DGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVED 479

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
            W L   +    V P++  Y  +++ +C KG       +  +M+E+    ++ TY+ L+ 
Sbjct: 480 GWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIR 539

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
              R G    +  L++ M   G +   ST+  V   L
Sbjct: 540 ARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNML 576


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 1/213 (0%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    Y +L+  LCK   +D+AL +   M   G   + +T+  ++  L    +++ A
Sbjct: 219 KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 278

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             LM+ M       D  +YN LL  YC  G +     + K+M  +    D  TY  LV G
Sbjct: 279 RLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRG 338

Query: 218 ACRAGRVEEAFVLLRRM-VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
            C A R+EEA  LL  M    G      TY+ V+    R   + +A +F+     R++  
Sbjct: 339 FCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAP 398

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +   + SL   L    R N A  +LK ++K D+
Sbjct: 399 NAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDV 431



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 109/244 (44%), Gaps = 32/244 (13%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           SV+  LCR   ++D+              P K  +  LI   C  +K+DEAL++   +  
Sbjct: 86  SVVDGLCRD-GKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILT 144

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGL---MEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
               L A++   +++ L R +R+ EA+ L   ME+ ++    PD+  Y  L+  +C  GN
Sbjct: 145 SSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGN 204

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
           L     +L  ME  K   +  TY +L+ G C+AG +++A  L RRM   G     V Y+T
Sbjct: 205 LEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTT 264

Query: 246 YAHVMGALLRLGYYAQAVKFVM-----VCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
             H + A     +   A + +M      C       DT  + +L      L R  EA  +
Sbjct: 265 LIHGLCA----AHKVDAARLLMDEMTATC----CPADTVSYNALLDGYCRLGRIEEAKQL 316

Query: 301 LKEM 304
            KEM
Sbjct: 317 FKEM 320



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 120/279 (43%), Gaps = 30/279 (10%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SLL  L     + Q++ + R  T  G  P+  T   Y  L++       ++  R L+++ 
Sbjct: 229 SLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVT---YTTLIHGLCAAHKVDAARLLMDEM 285

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG------------FPRKSAYDTL 109
              CC     ++N         ++L   CR L R+++              P +  Y  L
Sbjct: 286 TATCCPADTVSYN---------ALLDGYCR-LGRIEEAKQLFKEMAAKSCLPDRITYTCL 335

Query: 110 IGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +   C   +++EA  +++ M    G     +T+  +++  +R KR  EA   ++ M    
Sbjct: 336 VRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARN 395

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V+P+   Y+ L+   C  G +     VLK +++     D  TY  ++ G C   R EEA 
Sbjct: 396 VAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEAL 451

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
            LL  MV+        T+  V+GAL RLG   +A K ++
Sbjct: 452 TLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLV 490



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 7/243 (2%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKG---FPRKSAYDTLIGRLCKLKKIDEALRVV-D 127
           T+N + N      + S     L  +  G    P    Y T+I   CK  ++D A  ++ +
Sbjct: 11  TYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILRE 70

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           ++   G     +T+  ++  L R  +M+ A  ++  MK   V PD   ++ L+T +C   
Sbjct: 71  MVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNAR 130

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM---VDDGQSVLYS 244
            +     + K++       DA +  AL+ G CR  R+ EA+ L + M    D        
Sbjct: 131 KVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVV 190

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           TY  ++    + G   +A+K + V  GR    +   + SL   L      ++A  + + M
Sbjct: 191 TYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRM 250

Query: 305 NKR 307
             +
Sbjct: 251 TSK 253



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LCK  +++ A+ V+  + +       +T+  ++  L    R EEA  L
Sbjct: 398 PNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKP----DVVTYTIVIEGLCGTDRTEEALTL 453

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M   RV P +  +N ++ A C  G++     +L  M    L     TY  L+ G  R
Sbjct: 454 LEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSR 513

Query: 221 AGRVE---EAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            GR+E   E F ++RR      S           AL+R
Sbjct: 514 TGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIR 551



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 14/161 (8%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           TE +L++L ++     R++   P    ++++IG LC+L  +DEA +++  MA  G     
Sbjct: 447 TEEALTLLEEMVNK--RVE---PSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGM 501

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKE--------IRVSPDLTAYNYLLTAYCFKGNLT 190
           +T+  +L   +R  RME A+ L EVM+           + P+  A++ L+   C    + 
Sbjct: 502 VTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPE-QAFSALIRGLCKAREID 560

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
               V++++   +         A+V G  RAGR EEA  L+
Sbjct: 561 KAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLI 601



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 4/139 (2%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATS-GVLKKMEEEK-LGADARTYDALVLGACRAGRVEE 226
           V+P+   YN ++   C K  LT+ +  VLK+M + K +  D  TY  ++ G C+ G ++ 
Sbjct: 5   VAPNERTYNVVVNGLC-KARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDR 63

Query: 227 AFVLLRRMVD-DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           A  +LR MV  DG +    TY  V+  L R G   +A + V     + ++ D   F +L 
Sbjct: 64  ACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALI 123

Query: 286 SKLIGLERFNEANFILKEM 304
           +      + +EA  + KE+
Sbjct: 124 TGWCNARKVDEALKLYKEI 142


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 3/186 (1%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P    Y++LI  LC   K + A  ++  M + G  L+ I F+ I+    +  R+
Sbjct: 325 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 384

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E+  L ++M  I V PD+  Y+ L+  YC  G +   + +L  M    +  D  TY  L
Sbjct: 385 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTL 444

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGR 272
           + G C+  R+++A VL R M   G S    TY  ++  L +    A A +    +   GR
Sbjct: 445 INGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGR 504

Query: 273 DIKLDT 278
            ++L T
Sbjct: 505 QLELST 510



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 2/191 (1%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKR 153
           L +G P   +Y+ L+  LC   +  EAL ++ IMA+ G       +++  +++   +   
Sbjct: 44  LRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGD 103

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +++ +     M + R+SP++  YN ++ A C    +     VL  M +  +  D  TY++
Sbjct: 104 LDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNS 163

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           +V G C +G+ +EA V L++M  DG      TY  +M  L + G   +A K       R 
Sbjct: 164 IVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRG 223

Query: 274 IKLDTELFGSL 284
           +K +   +G+L
Sbjct: 224 LKPEITTYGTL 234



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 91/190 (47%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D   P    Y++L+  LCK  +  EA ++ D M + G      T+  +L        +
Sbjct: 185 RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL 244

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E  GL+++M    + P+   ++ L+ AY  +  +     V  KM ++ L  +A TY A+
Sbjct: 245 VEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAV 304

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   C++GRVE+A +   +M+D+G S     Y  ++  L     + +A + ++    R I
Sbjct: 305 IGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 364

Query: 275 KLDTELFGSL 284
            L+T  F S+
Sbjct: 365 CLNTIFFNSI 374



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I  LCK + +D+A+ V+  M + G     +T++ I+       + +EA   
Sbjct: 121 PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 180

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+   V PD+  YN L+   C  G  T    +   M +  L  +  TY  L+ G   
Sbjct: 181 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYAT 240

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G + E   LL  MV +G
Sbjct: 241 KGALVEMHGLLDLMVRNG 258



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 92/206 (44%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ D+M   G     IT+  ++      
Sbjct: 357 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 416

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + + PD   Y+ L+  YC    +     + ++ME   +  D  TY
Sbjct: 417 GKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITY 476

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G  +  R   A  L   +   G+ +  STY  ++  L +      A++       
Sbjct: 477 NIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCL 536

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D+KL+   F  +   L+ + R +EA
Sbjct: 537 MDLKLEARTFNIMIDALLKVGRNDEA 562



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 90/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+    K +K++EA+ V   M + G   +A+T+  ++ +L +  R+E+A   
Sbjct: 261 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 320

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  +SP    YN L+   C          ++ +M +  +  +   +++++   C+
Sbjct: 321 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 380

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY+ ++      G   +A K +       +K D   
Sbjct: 381 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 440

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +    + R  +A  + +EM
Sbjct: 441 YSTLINGYCKISRMKDALVLFREM 464



 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 1/163 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK K  D+ALR+   +      L A TF+ ++  L +  R +EA  L   
Sbjct: 509 STYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVA 568

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
                + P+   Y  +      +G L     +   ME+     D+   + +V    + G 
Sbjct: 569 FSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGE 628

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  A   L  M+D+    L ++ A +   LL  G Y +  +F+
Sbjct: 629 ITRAGTYL-SMIDEKHFSLEASTASLFIDLLSGGKYQEYHRFL 670


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 125/275 (45%), Gaps = 7/275 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDL-ETVRYLLNKRARDCCFNTAN 71
           + Q++ +       G+ PD  T   Y+ L+N    E  L E +++L N  +  C  N   
Sbjct: 267 VGQAMKLLDEMRNKGSKPDVVT---YNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVI- 322

Query: 72  TFNFITNTENSLSVLSDLCRTLA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T N I  +  S     D  + L+  L KG  P    ++ LI  LC+   +  A+ +++ M
Sbjct: 323 THNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM 382

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   ++++++P+L    + K+M+ A   +++M      PD+  YN LLTA C  G +
Sbjct: 383 PMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKV 442

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +L ++  +       TY+ ++ G  + G+ E A  LL  M   G      TY+ +
Sbjct: 443 DVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSL 502

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +  L R G   +A+KF     G  I+ +   + S+
Sbjct: 503 VSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSI 537



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           +LI   C++ K  +A  V++I+ + G     IT++ ++S   +   ++ A   ++V+  +
Sbjct: 154 SLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNA---LQVLDRM 210

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            V+PD+  YN +L   C  G L     VL +  +++   D  TY  L+   C+   V +A
Sbjct: 211 NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQA 270

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             LL  M + G      TY  ++  + + G   +A+KF+
Sbjct: 271 MKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 309



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 25/308 (8%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           ++LR L     + Q++ V     +   +PD  T   Y  L+ A   E  +     LL++ 
Sbjct: 221 TILRTLCDSGKLKQAMEVLDRQLQKECYPDVIT---YTILIEATCKESGVGQAMKLLDEM 277

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTL 109
                     T+N + N          +C+   RLD+              P    ++ +
Sbjct: 278 RNKGSKPDVVTYNVLIN---------GICKE-GRLDEAIKFLNNMPSYGCQPNVITHNII 327

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           +  +C   +  +A +++  M   G   S +TF+ +++ L R   +  A  ++E M     
Sbjct: 328 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGC 387

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           +P+  +YN LL  +C +  +      L  M       D  TY+ L+   C+ G+V+ A  
Sbjct: 388 TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 447

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           +L ++   G S +  TY  V+  L ++G   +A+K +     + +K D   + SL S L 
Sbjct: 448 ILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLS 507

Query: 290 GLERFNEA 297
              + +EA
Sbjct: 508 REGKVDEA 515



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 83/167 (49%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y+TL+  LCK  K+D A+ +++ ++  G     IT++ ++  L++  + E A  
Sbjct: 423 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 482

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M+   + PD+  Y+ L++    +G +         +E   +  +A TY++++LG C
Sbjct: 483 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 542

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           ++ + + A   L  M+        +TY  ++  +   G   +A+  +
Sbjct: 543 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLL 589



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 124/298 (41%), Gaps = 14/298 (4%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN--- 71
           ++  V     +SGA PD  T   Y+ L++      +++    +L++       N A    
Sbjct: 167 KATWVMEILEQSGAVPDVIT---YNVLISGYCKSGEIDNALQVLDR------MNVAPDVV 217

Query: 72  TFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N I  T      L      L R    + +P    Y  LI   CK   + +A++++D M
Sbjct: 218 TYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM 277

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G     +T++ +++ + +  R++EA   +  M      P++  +N +L + C  G  
Sbjct: 278 RNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRW 337

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +L  M  +       T++ L+   CR G +  A  +L +M   G +    +Y  +
Sbjct: 338 MDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPL 397

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +    +     +A++++ +   R    D   + +L + L    + + A  IL +++ +
Sbjct: 398 LHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSK 455



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 6/210 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           P S  Y+ L++    E+ ++     L+      C+    T+N +      +  + V  ++
Sbjct: 389 PNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI 448

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
              L+   KG  P    Y+T+I  L K+ K + A++++D M   G     IT+  ++S L
Sbjct: 449 LNQLS--SKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 506

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           +R  +++EA      ++ + + P+   YN ++   C           L  M  ++     
Sbjct: 507 SREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 566

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            TY  L+ G    G  +EA  LL  +   G
Sbjct: 567 ATYTILIEGIAYEGLAKEALDLLNELCSRG 596



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           GK  +  W +ME++++    PD+  YN L++ YC  G +     VL +M    +  D  T
Sbjct: 163 GKTKKATW-VMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVT 218

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ ++   C +G++++A  +L R +         TY  ++ A  +     QA+K +    
Sbjct: 219 YNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 278

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  K D   +  L + +    R +EA   L  M
Sbjct: 279 NKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM 312



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L R   +E+ +  +E M      PD+     L+  +C  G     + V++ +E+     D
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             TY+ L+ G C++G ++ A  +L RM      V Y+T   ++  L   G   QA++ +
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNT---ILRTLCDSGKLKQAMEVL 239


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    + +R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C    +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK   + +A  ++D M+  G     IT+  ++    +   +E A+  
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  +  D  AY  L++  C +G       +L++M    L  +  TY  ++   C 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCE 393

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G V     LL+ M  DG
Sbjct: 394 KGDVWTGLKLLKEMQRDG 411



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + +     S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V  D+  Y+ L+   C    +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+  RV+ A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLIKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   + +D  TY
Sbjct: 150 GEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+A ++++A  L   M+D+G
Sbjct: 210 SVLINGLCKASKMDDANELFDEMLDNG 236


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  KID+A  + D M   G   +++T
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVT 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L R G   
Sbjct: 310 MKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSV 369

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D   +  + ++        + + +LKEM +
Sbjct: 370 DAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N+    +++   C+   R+
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKN-GRV 263

Query: 97  DKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+  +
Sbjct: 264 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTL 323

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +     D   Y  L++  C +G       +L++M    L
Sbjct: 324 IDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGL 383

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             DARTY  ++   C+ G V +   LL+ M  DG      TY  +M  
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 56/135 (41%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E + E      L  +N L+
Sbjct: 90  DAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM 149

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +Y+ L+ G  R G ++E F L   M+  G  
Sbjct: 150 HRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ 209

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 210 PDVYTYSVLINGLCK 224



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 87/221 (39%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 94  CYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 153

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 154 KDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C+  ++++A  L   M+  G      T+  ++    + G    A++     
Sbjct: 214 TYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + +  D   + +L   L       +A+ ++ EM+ + LK
Sbjct: 274 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLK 314


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 182 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVT 241

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG L     ++ +M 
Sbjct: 242 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMS 301

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            E L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 302 MEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSV 361

Query: 261 QAVKFV 266
            A K +
Sbjct: 362 DAEKML 367



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TLI    +L  +DE  R+   M   G      T+  +++ L +  +M++A  L
Sbjct: 167 PSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 226

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 227 FDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 286

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M  +G      TY  ++    + G    A +        +I+LD  +
Sbjct: 287 KGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVV 346

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 347 YTALISGLCQEGRSVDAEKMLREMLSVGLK 376



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 1/168 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK   I  A  V++ + + G   S ++F+ +++   R   +
Sbjct: 126 LECGYPASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDL 185

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M    V PD+  Y+ L+   C +  +   + +  +M ++ +  +  T+  L
Sbjct: 186 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTL 245

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA
Sbjct: 246 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQA 293



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 57/135 (42%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  + + E      L  +N L+
Sbjct: 82  DAIECYRLTREHKFWVPLDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILM 141

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C +G++     VL  + +  L     +++ L+ G  R G ++E F L   M   G  
Sbjct: 142 QRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQ 201

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 202 PDVYTYSVLINGLCK 216


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  KID+A  + D M   G   +++T
Sbjct: 173 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVT 232

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 233 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 292

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L R G   
Sbjct: 293 MKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSV 352

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D   +  + ++        + + +LKEM +
Sbjct: 353 DAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 398



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N+    +++   C+   R+
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKN-GRV 246

Query: 97  DKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+  +
Sbjct: 247 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTL 306

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +     D   Y  L++  C +G       +L++M    L
Sbjct: 307 IDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGL 366

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             DARTY  ++   C+ G V +   LL+ M  DG      TY  +M  
Sbjct: 367 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 56/135 (41%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E + E      L  +N L+
Sbjct: 73  DAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM 132

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +Y+ L+ G  R G ++E F L   M+  G  
Sbjct: 133 HRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ 192

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 193 PDVYTYSVLINGLCK 207



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 87/221 (39%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 77  CYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 136

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 137 KDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 196

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C+  ++++A  L   M+  G      T+  ++    + G    A++     
Sbjct: 197 TYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQM 256

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + +  D   + +L   L       +A+ ++ EM+ + LK
Sbjct: 257 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLK 297


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 117/270 (43%), Gaps = 17/270 (6%)

Query: 40  DLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG 99
           D +   G +RD+ T    ++   +            +    +++ V  ++CR     +  
Sbjct: 314 DAIGEWGFKRDVWTYNVFIHGYCK------------VGRVRDAVRVFDEMCR-----EGV 356

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y++LI  LCK  ++  A  +V  M   G     +T   +L  L + KR+++A  
Sbjct: 357 VPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAIL 416

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   + E  ++PD+ +Y  L+   C    +     +L+ M  + L     TY  L+ G C
Sbjct: 417 LFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLC 476

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R+GR+  A+ LL  M   G      TY+ ++ AL +  +  +AV        R ++ D  
Sbjct: 477 RSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVM 536

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +  +       ER +EA  + +EM+ ++L
Sbjct: 537 CYTIMIDGYCKSERIDEAINLFREMHMKNL 566



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 1/215 (0%)

Query: 97  DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           + GF R    Y+  I   CK+ ++ +A+RV D M   G   + +T++ ++  L +   + 
Sbjct: 318 EWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVS 377

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            AW +++ M    ++PD+     LL   C    L     +  ++ E  L  D  +Y  L+
Sbjct: 378 GAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILI 437

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G C + R+ EA  LLR M          TY+ ++  L R G  + A + +     +   
Sbjct: 438 HGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPL 497

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            DT  +  L   L   +  +EA F+  +M KR L+
Sbjct: 498 PDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLE 532



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 13/194 (6%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           V+  LCR    +D+GF            P +  Y +LI  LC + K  E   +VD M   
Sbjct: 191 VIDCLCRN-GFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRR 249

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G  +S   F  ++  L +   + EA  + + M      P++     L+  YC KGN+   
Sbjct: 250 GLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMA 309

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +   + E     D  TY+  + G C+ GRV +A  +   M  +G      TY  ++  
Sbjct: 310 RELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDC 369

Query: 253 LLRLGYYAQAVKFV 266
           L + G  + A + V
Sbjct: 370 LCKAGEVSGAWEIV 383



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 2/144 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC+  +I  A R+++ M   G     IT+  +L  L + + ++EA  L
Sbjct: 463 PHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFL 522

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + PD+  Y  ++  YC    +     + ++M  + L  D  TY  L     +
Sbjct: 523 FNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFK 582

Query: 221 AG--RVEEAFVLLRRMVDDGQSVL 242
           +G    E  FV + R ++    VL
Sbjct: 583 SGSNSYEWKFVNVIRDINPPPRVL 606



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +  LI  LCK   + EA  + D M   G+  + +T   ++        ++ A  L + +
Sbjct: 257 VFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAI 316

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E     D+  YN  +  YC  G +     V  +M  E +  +  TY++L+   C+AG V
Sbjct: 317 GEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEV 376

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
             A+ +++ M   G +    T   ++  L +     QA+          +  D   +  L
Sbjct: 377 SGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTIL 436

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
                   R  EA  +L++M+ ++L
Sbjct: 437 IHGCCTSRRMGEAMNLLRDMHLKNL 461



 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           A +T++  LC    + +AL   D +   GF L+ +++  +++ L    R+ EA  L+ ++
Sbjct: 109 ALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEAVNLLRMI 168

Query: 165 KEIR--------VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           ++ +        V  ++  Y+ ++   C  G +        +M    +  +  TY +L+ 
Sbjct: 169 EKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIR 228

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           G C  G+  E F L+  M+  G  V    +  ++  L + G   +A
Sbjct: 229 GLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEA 274



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 24/199 (12%)

Query: 96  LDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAE------GGFGL--SAITFHPILS 146
           ++ GF   + +Y  LI  LC+  +++EA+ ++ ++ +       GF +  + + +  ++ 
Sbjct: 134 VNNGFSLNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVID 193

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L R   ++E +     M    V P+   Y  L+   C  G      G++ +M    L  
Sbjct: 194 CLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDV 253

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
               +  L+ G C+ G + EA  +   MV+ G      T   +MG     GY        
Sbjct: 254 SVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMG-----GY-------- 300

Query: 267 MVCGGRDIKLDTELFGSLG 285
             C   ++ +  ELF ++G
Sbjct: 301 --CLKGNVDMARELFDAIG 317


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           ++  P    Y+T+IG  CKLK+IDEA +++  M   G   + +T++ +++ L R  R+EE
Sbjct: 232 NRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEE 291

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
             G++  M     +PD   YN L+  YC  GN      +  +M    L  D  TY +L+ 
Sbjct: 292 TSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLIN 351

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             C+AG +  A     +M   G      TY  ++    + G+  +A +
Sbjct: 352 TMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYR 399



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ LI   C    ++  LR  + M       + +T++ ++    + KR++EA+ L+  M
Sbjct: 205 SYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM 264

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               + P+L  YN ++   C  G +  TSGVL +M+ +    D  TY+ LV G C+ G  
Sbjct: 265 GLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNF 324

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +A VL   M+ +G      TY  ++  + + G   +A++F
Sbjct: 325 HQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEF 365



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 15/217 (6%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  +CK   ++ A+   D M   G   + +T+  +++  ++   M+EA+ +
Sbjct: 341 PDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRI 400

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P +  YN LL  +C  G +    G+L+ ME + L  D  +Y  ++ G CR
Sbjct: 401 WDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR 460

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              ++ AF +   MV+ G S    TY+ ++  L               C  R +    +L
Sbjct: 461 YQELDRAFQMNAEMVEKGVSPDAITYSSLIQGL---------------CEQRRLNEACDL 505

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRD 317
           F  + +K +  + F   + I     + DL     L D
Sbjct: 506 FQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHD 542



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 2/240 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N + N    +  + +    LA +D KGF P    Y+TL+   CK+    +AL +   M
Sbjct: 275 TYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEM 334

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G     +T+  +++ + +   +  A    + M    + P+   Y  L+  +  KG +
Sbjct: 335 LRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFM 394

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  +M          TY+AL+ G C +GR+EEA  LLR M   G S    +Y+ +
Sbjct: 395 DEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTI 454

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +    R     +A +       + +  D   + SL   L    R NEA  + +EM  + L
Sbjct: 455 IAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSL 514



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 2/207 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+N    +  ++    + ++  R     T  T+N + N       + +    
Sbjct: 376 PNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGL 435

Query: 93  LARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  ++ KG  P   +Y T+I   C+ +++D A ++   M E G    AIT+  ++  L  
Sbjct: 436 LRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCE 495

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            +R+ EA  L + M    + PD   Y  L+  YC +G+L     +  +M ++    D  T
Sbjct: 496 QRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVT 555

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDD 237
           Y+ L+ G  +  R  EA  LL ++  D
Sbjct: 556 YNVLINGLNKQARTREAKRLLLKLFYD 582



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 1/155 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR-MEEAWGLME 162
           + +D ++     L  I++AL +VD+    GF    ++++ IL  + R ++ +  A  +  
Sbjct: 133 AVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYR 192

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M    VS ++ +YN L+  +C  GNL       ++ME  +   +  TY+ ++   C+  
Sbjct: 193 EMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLK 252

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           R++EAF LLR M  +G      TY  V+  L R+G
Sbjct: 253 RIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVG 287



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 9/248 (3%)

Query: 64  DCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKK-IDEA 122
           D    + +  NFI   E +L+++      LA+L+   P   +Y+ ++  + + +K +  A
Sbjct: 136 DLVVKSCSYLNFI---EKALNIVD-----LAKLNGFMPGVLSYNAILDSIVRCRKPVIFA 187

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
            +V   M   G  L+  +++ ++        +E      E M+  R  P++  YN ++ A
Sbjct: 188 EKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGA 247

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           YC    +     +L+ M  E L  +  TY+ ++ G CR GR+EE   +L  M   G +  
Sbjct: 248 YCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPD 307

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
             TY  ++    ++G + QA+          +  D   + SL + +      N A     
Sbjct: 308 GVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFD 367

Query: 303 EMNKRDLK 310
           +M+ R L+
Sbjct: 368 QMHVRGLR 375



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 97/246 (39%), Gaps = 43/246 (17%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ LVN      +      L ++  R+       T+  + NT   +    +L R 
Sbjct: 306 PDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINT---MCKAGNLNRA 362

Query: 93  LARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +   D+       P    Y +LI    +   +DEA R+ D M   GF  + +T++ +L+ 
Sbjct: 363 MEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNG 422

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC--------FKGN----------- 188
                RMEEA GL+  M+   +SPD+ +Y+ ++  +C        F+ N           
Sbjct: 423 HCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPD 482

Query: 189 ----------------LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
                           L     + ++M  + L  D  TY +L+ G C+ G + EA  L  
Sbjct: 483 AITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHD 542

Query: 233 RMVDDG 238
            M+  G
Sbjct: 543 EMIKKG 548



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 15/154 (9%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  Y +LI   CK   ++EAL + D M + GF    +T++ +++ L +  R  EA  
Sbjct: 515 LPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKR 574

Query: 160 LMEVMKEIRVSPDLTAYNYLLTA---------------YCFKGNLTATSGVLKKMEEEKL 204
           L+  +      P+   Y+ L+ +               +C KG +     V + M +   
Sbjct: 575 LLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQ 634

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             +   Y+ ++ G CR G V +A  L + MVD G
Sbjct: 635 KPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFG 668



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 81/209 (38%), Gaps = 25/209 (11%)

Query: 29  FPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD 88
            PDE T   Y  L+N    E DL     L ++  +        T+N + N  N  +   +
Sbjct: 515 LPDEFT---YTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTRE 571

Query: 89  LCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
             R L +L  D+  P    YDTLI     +    E   VV ++   GF +  +       
Sbjct: 572 AKRLLLKLFYDESIPNGITYDTLIESCSDI----EFKSVVALIK--GFCMKGL------- 618

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                  M EA  + E M +    P+   YN ++  +C  GN+     + K+M +     
Sbjct: 619 -------MNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIP 671

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMV 235
              T  ALV      G  E+  +++R ++
Sbjct: 672 HTVTIIALVKALYSEGMDEQLNLVIRDIL 700


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 1/201 (0%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+ FP    Y  LI  LC  ++  EAL +V  M E G   +  T+  ++  L    + E+
Sbjct: 317 DECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEK 376

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L+  M E  + P++  YN L+  YC +G +     V++ ME  KL  + RTY+ L+ 
Sbjct: 377 ARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIK 436

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C++  V +A  +L +M++        TY  ++    R G +  A + + +   R +  
Sbjct: 437 GYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495

Query: 277 DTELFGSLGSKLIGLERFNEA 297
           D   + S+   L   +R  EA
Sbjct: 496 DQWTYTSMIDSLCKSKRVEEA 516



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 5/186 (2%)

Query: 77  TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           +N   ++ VL+   + L R  K  P    Y++LI   C+    D A R++ +M + G   
Sbjct: 441 SNVHKAMGVLN---KMLER--KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
              T+  ++  L + KR+EEA  L + +++  V+P++  Y  L+  YC  G +     +L
Sbjct: 496 DQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLML 555

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           +KM  +    ++ T++AL+ G C  G+++EA +L  +MV  G     ST   ++  LL+ 
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKD 615

Query: 257 GYYAQA 262
           G +  A
Sbjct: 616 GDFDHA 621



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   C+ K +D A +V + M   G   + + +  ++  L   +R++EA  L
Sbjct: 251 PDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDL 310

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK+    P +  Y  L+ + C     +    ++K+MEE  +  +  TY  L+   C 
Sbjct: 311 FVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCS 370

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             + E+A  LL +M++ G      TY  ++    + G    AV  V +   R +  +T  
Sbjct: 371 QCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRT 430

Query: 281 FGSL 284
           +  L
Sbjct: 431 YNEL 434



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 6/227 (2%)

Query: 88  DLCRTLARLDKGFPRK-----SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           DLCR + + D+ F  K       Y+TL+  L +   +DE  +V   M E     +  T++
Sbjct: 164 DLCRKMNK-DERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYN 222

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +++   +   +EEA   +  + E  + PD   Y  L+  YC + +L +   V  +M  +
Sbjct: 223 KMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLK 282

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
               +   Y  L+ G C A R++EA  L  +M DD       TY  ++ +L      ++A
Sbjct: 283 GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEA 342

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  V       IK +   +  L   L    +F +A  +L +M ++ L
Sbjct: 343 LNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGL 389



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 69/162 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    ++ LI  LC   K+ EA  + + M + G   +  T   ++  L +    + A+ 
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M      PD   Y   +  YC +G L     ++ KM E  +  D  TY +L+ G  
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYG 683

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             G+   AF +L+RM D G      T+  ++  LL + Y  Q
Sbjct: 684 DLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQ 725



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 7/212 (3%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G  P +  Y ++I  LCK K+++EA  + D + + G   + + +  ++    +  +++
Sbjct: 490 DRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVD 549

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  ++E M      P+   +N L+   C  G L   + + +KM +  L     T   L+
Sbjct: 550 EAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILI 609

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
               + G  + A+   ++M+  G      TY   +    R G    A    M+   R+  
Sbjct: 610 HRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED--MMAKMRENG 667

Query: 276 LDTELFGSLGSKLIGLERFNEANF---ILKEM 304
           +  +LF +  S + G     + NF   +LK M
Sbjct: 668 VSPDLF-TYSSLIKGYGDLGQTNFAFDVLKRM 698



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 112/308 (36%), Gaps = 66/308 (21%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDL 89
           P    Y  L++       ++    +L K     C   + TFN + +    +  L   + L
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLL 589

Query: 90  CRTLARLDKGFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
              + ++  G     + DT LI RL K    D A      M   G    A T+   +   
Sbjct: 590 EEKMVKI--GLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY------------------------- 183
            R  R+ +A  +M  M+E  VSPDL  Y+ L+  Y                         
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ 707

Query: 184 -------------------------CFKGNLTATSGV---LKKMEEEKLGADARTYDALV 215
                                    C   N+     V   L+KM E  +  +A++Y+ L+
Sbjct: 708 HTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767

Query: 216 LGACRAGRV---EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCG 270
           LG C  G +   E+ F  ++R  ++G S     +  ++    +L  + +A K V  M+C 
Sbjct: 768 LGICEVGNLRVAEKVFDHMQR--NEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICV 825

Query: 271 GRDIKLDT 278
           G   +L++
Sbjct: 826 GHLPQLES 833



 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 1/148 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWG 159
           P   +Y+ LI  +C++  +  A +V D M    G   S + F+ +LS   + K+  EA  
Sbjct: 758 PNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAK 817

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +++ M  +   P L +   L+     KG     + V + + +     D   +  ++ G  
Sbjct: 818 VVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVG 877

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           + G VE  + L   M  +G      TY+
Sbjct: 878 KQGLVEAFYELFNVMEKNGCKFSSQTYS 905


>gi|255575578|ref|XP_002528689.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531861|gb|EEF33678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 271

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 72/136 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  +I   CK    DEA RV+D M E G   + +TF  +++   +  ++++A+ +
Sbjct: 120 PDSWTFSIVIRCHCKRNDADEAKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEV 179

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++VM  I   P++  YN LL   C+ G +     +L+ +++  +  D  TY A++ G C+
Sbjct: 180 IDVMNTIGCQPNVQTYNCLLKGLCYIGKVEEAYEILEDIKKSSIEPDIYTYTAMMDGFCK 239

Query: 221 AGRVEEAFVLLRRMVD 236
            GR EEA  LL   ++
Sbjct: 240 VGRSEEAMQLLNEAIE 255



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 79/170 (46%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P  S ++ L+  L    ++D AL +   ++  G    + TF  ++    +    +E
Sbjct: 81  DGEIPSISDFNDLLMALVIANELDLALNMYSDVSTLGLVPDSWTFSIVIRCHCKRNDADE 140

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  +++ M E  ++P++  +  L+ ++C KG L     V+  M       + +TY+ L+ 
Sbjct: 141 AKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQPNVQTYNCLLK 200

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G C  G+VEEA+ +L  +          TY  +M    ++G   +A++ +
Sbjct: 201 GLCYIGKVEEAYEILEDIKKSSIEPDIYTYTAMMDGFCKVGRSEEAMQLL 250



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 91  RTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           R L R L+ G  P    + TLI   CK  K+ +A  V+D+M   G   +  T++ +L  L
Sbjct: 143 RVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQPNVQTYNCLLKGL 202

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
               ++EEA+ ++E +K+  + PD+  Y  ++  +C  G       +L +  E +L  D
Sbjct: 203 CYIGKVEEAYEILEDIKKSSIEPDIYTYTAMMDGFCKVGRSEEAMQLLNEAIEMELTDD 261



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/180 (18%), Positives = 77/180 (42%)

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            ++D+  + G   S   F+ +L  L     ++ A  +   +  + + PD   ++ ++  +
Sbjct: 73  EILDVFGKDGEIPSISDFNDLLMALVIANELDLALNMYSDVSTLGLVPDSWTFSIVIRCH 132

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C + +      VL +M E  L  +  T+  L+   C+ G++++A+ ++  M   G     
Sbjct: 133 CKRNDADEAKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQPNV 192

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++  L  +G   +A + +       I+ D   + ++      + R  EA  +L E
Sbjct: 193 QTYNCLLKGLCYIGKVEEAYEILEDIKKSSIEPDIYTYTAMMDGFCKVGRSEEAMQLLNE 252


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHE-RDLETVRYLLNKRARDCCFNTANTF 73
           Q++ +       G  PD  T   Y+ +VN    E R  + + +L N  +  C  NT  ++
Sbjct: 10  QAMKLLDEMRDKGCTPDIVT---YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTV-SY 65

Query: 74  NFITNTENSLSVLSDLCRTLARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAE 131
           N +     +     D    +  +  KG P     ++ LI  LC+   ++ AL V++ + +
Sbjct: 66  NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 125

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G   ++++++P+L    + K+M++A   +++M      PD+ +YN LLTA C  G +  
Sbjct: 126 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 185

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +L +++++       +Y+ ++ G  +AG+ +EA  LL  MV  G      TY+ +  
Sbjct: 186 AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA 245

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            L R      A++         I+ +T L+ ++   ++GL +  E +
Sbjct: 246 GLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI---ILGLCKRRETH 289



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 108/269 (40%), Gaps = 39/269 (14%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN------------- 78
           EP +  Y+ ++         E    L+ +  +  C     TFN + +             
Sbjct: 59  EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALE 118

Query: 79  ----------TENSLS---VLSDLCRTLARLDKG------------FPRKSAYDTLIGRL 113
                     T NSLS   +L   C+   ++DK             +P   +Y+TL+  L
Sbjct: 119 VLEQIPKYGCTPNSLSYNPLLHAFCKQ-KKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 177

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           C+  ++D A+ ++  + + G     I+++ ++  LT+  + +EA  L+  M    + PD+
Sbjct: 178 CRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDI 237

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
             Y+ +    C +  +        K+++  +  +   Y+A++LG C+      A  L   
Sbjct: 238 ITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAY 297

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           M+ +G     STY  ++  L   G   +A
Sbjct: 298 MIGNGCMPNESTYTILIEGLAYEGLIKEA 326



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/153 (18%), Positives = 72/153 (47%)

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           CK     +A++++D M + G     +T++ +++ + +  R+++A   ++ +      P+ 
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
            +YN +L   C          ++ +M ++    +  T++ L+   CR G VE A  +L +
Sbjct: 63  VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 122

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +   G +    +Y  ++ A  +     +A+ F+
Sbjct: 123 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL 155


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I R C   K++ A  + D M E G   + +T++ ++  L + +R+ EA  L
Sbjct: 254 PNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERL 313

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  MK   +SP+L +YN L+  YC  GNL   S +  +M+         TY+ L+ G   
Sbjct: 314 MCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSE 373

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A        ++R M   G S    TY  +M AL+R     +A +         +  D  +
Sbjct: 374 AKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYI 433

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +G L   L  +    EA+ + K +++  LK
Sbjct: 434 YGVLIHGLCVVGDMKEASKLFKSLDEMHLK 463



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 8/211 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI----TNTENSLSVLSD 88
           P    Y+ L++      +L+    L N+        +  T+N +    +  +NS  V +D
Sbjct: 324 PNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGV-TD 382

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           + R +    +G  P K  Y  L+  L +   I++A ++   M + G       +  ++  
Sbjct: 383 MVREMEA--RGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHG 440

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L     M+EA  L + + E+ + P+   YN ++  YC +G+      +LK+M E  +  +
Sbjct: 441 LCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPN 500

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             +Y++ +   C+  +  EA VLL+ M++ G
Sbjct: 501 VASYNSTIXILCKDEKWTEAEVLLKDMIELG 531



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 92  TLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           T   LD  FP     ++ +I    + +  ++AL   + M   G    + TF+ +L +L +
Sbjct: 71  TQPHLDS-FPTHVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIK 129

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
               E+AW +    K   V  D+ ++  ++   C  G L     VL +MEE  L  +   
Sbjct: 130 SNFFEKAWRVFNETKG-NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVV 188

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           Y  L+ G C+ G +E    L  +M +        TY  ++    ++G
Sbjct: 189 YTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMG 235



 Score = 44.3 bits (103), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 2/152 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           ++  +I   C++  +D+   V+  M E G   + + +  ++    +   +E    L   M
Sbjct: 153 SFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKM 212

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL-KKMEEEKLGADARTYDALVLGACRAGR 223
            E+ V  +   Y  L+  + FK  L      L +KM+   +  +  TY++++   C  G+
Sbjct: 213 GELDVVANQYTYTVLINGF-FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGK 271

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +  AF L   M + G +    TY  ++G L +
Sbjct: 272 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQ 303



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 42/82 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I   CK      ALR++  M E G   +  +++  + +L + ++  EA  L
Sbjct: 464 PNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVL 523

Query: 161 MEVMKEIRVSPDLTAYNYLLTA 182
           ++ M E+ + P ++ +N +  A
Sbjct: 524 LKDMIELGLKPSISIWNMISKA 545


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC   K D+A  ++  M + G  L  I F+ I+    +  R+ E+  L
Sbjct: 442 PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKL 501

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M  I V P++  Y+ L+  YC  G +   + +L  M    +  D  TY+ L+ G C+
Sbjct: 502 FDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCK 561

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             R+E+A VL R M   G S    TY  ++  L +
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 111/254 (43%), Gaps = 2/254 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ ++ A    + ++    +L    ++       T+N I +   S     +    
Sbjct: 232 PNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++  D   P    Y++L+  LCK  +  EA ++ D M + G      T+  +L     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + E  GL+++M    + P+   ++ L+ AY  +G +     V  KM ++ L  D  T
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  ++   C++GRVE+A     +M+D+  S     Y  ++ +L     + +A + ++   
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 271 GRDIKLDTELFGSL 284
            R I LDT  F S+
Sbjct: 472 DRGICLDTIFFNSI 485



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 1/218 (0%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    Y+++I  LCK + +D+A+ V+  M + G   +  T++ I+       + 
Sbjct: 226 LDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA G ++ M    V PD+  YN L+   C  G  T    +   M +  L  +  TY  L
Sbjct: 286 KEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    G + E   LL  MV +G    +  ++ ++ A  + G   QA+        + +
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
             DT  +G++   L    R  +A    ++M    L  G
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 89/187 (47%), Gaps = 2/187 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEA 157
            P   +Y+ L+  LC   +  EAL ++ +M + G       +++  +++   +   +++A
Sbjct: 159 IPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKA 218

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +G    M +  + P++  YN ++ A C    +     VL  M +  +  + RTY+++V G
Sbjct: 219 YGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHG 278

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C +G+ +EA   L++M  DG      TY  +M  L + G   +A K       R +K +
Sbjct: 279 YCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPE 338

Query: 278 TELFGSL 284
              +G+L
Sbjct: 339 ITTYGTL 345



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 95/206 (46%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ D+M   G   + IT+  ++      
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLA 527

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + + PD   YN L+  YC    +     + ++ME   +  D  TY
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G  +  R   A  L   + + G  +  STY  ++  L +     +A++       
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D++L+T  F  +   L+ + R +EA
Sbjct: 648 TDLQLETRTFNIMIGALLKVGRNDEA 673



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 89/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+D+A+ V   M + G     +T+  ++ +L +  R+E+A   
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M + R+SP    YN L+ + C          ++ +M +  +  D   +++++   C+
Sbjct: 432 FEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCK 491

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY+ ++      G   +A K +       +K D   
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVT 551

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +    + R  +A  + +EM
Sbjct: 552 YNTLINGYCKISRMEDALVLFREM 575



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I    K   +D+A      M + G   + +T++ I++ L + + M++A  +
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEV 256

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V P+   YN ++  YC  G      G LKKM  + +  D  TY++L+   C+
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
            GR  EA  +   M   G     +TY  ++
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTYGTLL 346



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 99/255 (38%), Gaps = 38/255 (14%)

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           A  D+  P    Y  LIG  C   ++D     +  + + GF + AI F P+L  L   KR
Sbjct: 82  AGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKR 141

Query: 154 MEEAWGL-MEVMKEIRVSPDLTAYNYLLTAYC---------------------------- 184
             +A  + +  M ++   P++ +YN LL   C                            
Sbjct: 142 TSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVS 201

Query: 185 --------FK-GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
                   FK G+L    G   +M +  +  +  TY++++   C+A  +++A  +L  MV
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMV 261

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
            +G      TY  ++      G   +A+ F+       ++ D   + SL   L    R  
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321

Query: 296 EANFILKEMNKRDLK 310
           EA  +   M KR LK
Sbjct: 322 EARKMFDSMTKRGLK 336



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 2/190 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C   K+DEA +++  M   G     +T++ +++   +  RME+A  L
Sbjct: 512 PNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVL 571

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK-KMEEEKLGADARTYDALVLGAC 219
              M+   VSPD+  YN +L    F+   TA +  L   + E     +  TY+ ++ G C
Sbjct: 572 FREMESSGVSPDIITYNIILQGL-FQTRRTAAAKELYVGITESGTQLELSTYNIILHGLC 630

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +    +EA  + + +      +   T+  ++GALL++G   +A           +  D  
Sbjct: 631 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVR 690

Query: 280 LFGSLGSKLI 289
            +  +   LI
Sbjct: 691 TYSLMAENLI 700



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 1/163 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK    DEALR+   +      L   TF+ ++  L +  R +EA  L   
Sbjct: 620 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAA 679

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +    + PD+  Y+ +      +G L     +   MEE    A++R  +++V    + G 
Sbjct: 680 LSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGD 739

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  A   L  M+D+    L ++ A +   LL  G Y +  +F+
Sbjct: 740 ITRAGTYL-FMIDEKHFSLEASTASLFLDLLSGGKYQEYHRFL 781


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 2/255 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L+     E  L+     L K     C +   + N I  +  S     D  +
Sbjct: 238 KPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMK 297

Query: 92  TLAR-LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            LA  L KG FP    ++ LI  LC+   + +AL V+++M + G   ++ +F+P++    
Sbjct: 298 LLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFC 357

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
             K ++ A   +E+M      PD+  YN LLTA C  G +     +L ++  +       
Sbjct: 358 NRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLI 417

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           +Y+ ++ G  + G+ E A  LL  M   G      T   V+G L R G   +A+KF    
Sbjct: 418 SYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYL 477

Query: 270 GGRDIKLDTELFGSL 284
            G  IK +  ++ S+
Sbjct: 478 KGFGIKPNAFIYNSI 492



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 8/201 (3%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
           C      F  I  T+N+  ++  L  + A +D      ++Y+ LI   CK  +I+EALRV
Sbjct: 107 CTALIREFCKIGRTKNATRIMGILEESGAVIDA-----NSYNVLINAYCKSGEIEEALRV 161

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           +D         +A T+  +L  L    ++++A  +++   + +  PD+     L+ A C 
Sbjct: 162 LD---HTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCK 218

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           +  +     +  +M  +    D  TY+ L+ G C+ GR++EA + L+++   G      +
Sbjct: 219 ESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVIS 278

Query: 246 YAHVMGALLRLGYYAQAVKFV 266
           +  ++ +L   G +  A+K +
Sbjct: 279 HNMILRSLCSGGRWMDAMKLL 299



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 2/213 (0%)

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLC 114
           LL    R  CF +  TFN + N      +L      L  + K    P   +++ LI   C
Sbjct: 298 LLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFC 357

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
             K ID A+  ++IM   G     +T++ +L+ L +  ++++A  ++  +     SP L 
Sbjct: 358 NRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLI 417

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +YN ++      G       +L++M  + L  D  T  ++V G  R G+V EA      +
Sbjct: 418 SYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYL 477

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
              G       Y  +M  L +    + A+ F++
Sbjct: 478 KGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLV 510



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 4/171 (2%)

Query: 97  DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG  P   A   LI   CK+ +   A R++ I+ E G  + A +++ +++   +   +E
Sbjct: 97  NKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIE 156

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA   + V+    V+P+   Y+ +L + C +G L     VL +  + K   D  T   L+
Sbjct: 157 EA---LRVLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLI 213

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
              C+   V +A  L   M   G      TY  ++    + G   +A+ F+
Sbjct: 214 DATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFL 264



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 1/194 (0%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           AN++N + N       + +  R L       P  + YD ++  LC   K+ +A++V+D  
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVLDHTSVA-PNAATYDAVLCSLCDRGKLKQAMQVLDRQ 197

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            +       +T   ++    +   + +A  L   M+     PD+  YN L+  +C +G L
Sbjct: 198 LQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRL 257

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                 LKK+      +D  +++ ++   C  GR  +A  LL  M+  G      T+  +
Sbjct: 258 DEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNIL 317

Query: 250 MGALLRLGYYAQAV 263
           +  L + G   +A+
Sbjct: 318 INFLCQKGLLGKAL 331



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L  L R   +EE    +E M      PD+ A   L+  +C  G     + ++  +EE   
Sbjct: 76  LCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGA 135

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL--YSTYAHVMGALLRLGYYAQA 262
             DA +Y+ L+   C++G +EEA  +L     D  SV    +TY  V+ +L   G   QA
Sbjct: 136 VIDANSYNVLINAYCKSGEIEEALRVL-----DHTSVAPNAATYDAVLCSLCDRGKLKQA 190

Query: 263 VKFV 266
           ++ +
Sbjct: 191 MQVL 194



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 35/202 (17%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP------------- 143
            K +P       LI   CK   + +A+++ + M   G     +T++              
Sbjct: 200 SKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDE 259

Query: 144 ----------------------ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
                                 IL  L  G R  +A  L+  M      P +  +N L+ 
Sbjct: 260 AIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILIN 319

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
             C KG L     VL+ M +     ++R+++ L+ G C    ++ A   L  MV  G   
Sbjct: 320 FLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYP 379

Query: 242 LYSTYAHVMGALLRLGYYAQAV 263
              TY  ++ AL + G    AV
Sbjct: 380 DIVTYNILLTALCKDGKVDDAV 401


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 9/220 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDL 89
           PT   Y+ LV+A   + D+   + L+++  +     T   +  + +   +E+ L     +
Sbjct: 184 PTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESM 243

Query: 90  CRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            R +   D G FP    Y+ L+   CK   + +AL +   M + G   + +TF  ++  L
Sbjct: 244 FRQMK--DSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDAL 301

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            + + +  A      M +  V P++  +N L+  Y   GN +  + +L +ME+ K+  D 
Sbjct: 302 CKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDV 361

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
            TY  L+  ACR G VEEA  +L+RM  +G    SV+Y++
Sbjct: 362 FTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNS 401



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 97/209 (46%), Gaps = 14/209 (6%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI-------TNTENSLS 84
           EPT   Y  L++    E  L     +  +      F    T+N +        N + +L 
Sbjct: 218 EPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALH 277

Query: 85  VLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           +   +      LD G  P    +  LI  LCK++++  A R    MA+ G   + + F+ 
Sbjct: 278 LYQGM------LDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNS 331

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++   ++     EA  L+  M++ ++SPD+  Y+ L+   C  G +     +LK+ME+E 
Sbjct: 332 LIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEG 391

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLR 232
           + A++  Y++L+ G C+ G +E+A  + +
Sbjct: 392 VPANSVVYNSLIDGYCKEGNMEKALEIFK 420



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 88/208 (42%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
            FP   A + L+  L K    D    + + M       + +T++ ++    R   +  A 
Sbjct: 147 AFPAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAK 206

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  M +  + P +  Y  L+   C +  L     + ++M++  +  +  TY+ L+ G 
Sbjct: 207 SLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGY 266

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+   V++A  L + M+DDG      T+  ++ AL ++     A +F +      +  + 
Sbjct: 267 CKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNV 326

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
            +F SL          +EA  +L EM K
Sbjct: 327 VVFNSLIDGYSKAGNCSEATDLLLEMEK 354


>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
          Length = 348

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     +TL+  LC   ++ EA  +VD M E G      T+ PIL+ + +      A  L
Sbjct: 184 PNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDL 243

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++ +V P +  YN ++ + C  GN      +  +ME E + AD  TY++L+ G C 
Sbjct: 244 LRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCN 303

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           AGR ++   LLR M+    +    T++ ++   ++ G
Sbjct: 304 AGRWDDGAQLLRDMITRNITPNVVTFSALIDCFVKEG 340



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TL+  LC   ++ EA+ +VD M E     + +T + +++ L    ++ EA  L
Sbjct: 149 PDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCLKDQVSEAEAL 208

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E    PD   Y  +L   C  GN  +   +L+KME++K+     TY+ ++   C+
Sbjct: 209 VDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNMIIDSLCK 268

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  +EA  L   M  +G      TY  ++G     G +    + +     R+I  +   
Sbjct: 269 NGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQLLRDMITRNITPNVVT 328

Query: 281 FGSL 284
           F +L
Sbjct: 329 FSAL 332



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 94/201 (46%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +I   C+ +K+  A  V+  + + G+    +TF  +++ L    R+ EA  +++ M E++
Sbjct: 122 VINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMK 181

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V P+L   N L+   C K  ++    ++ +M E     D  TY  ++   C++G    A 
Sbjct: 182 VRPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSAL 241

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            LLR+M D        TY  ++ +L + G Y +A+          IK D   + SL    
Sbjct: 242 DLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGF 301

Query: 289 IGLERFNEANFILKEMNKRDL 309
               R+++   +L++M  R++
Sbjct: 302 CNAGRWDDGAQLLRDMITRNI 322



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 1/223 (0%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           DL +++ R  +  P    +  L   + K K+ +  L +   M   G   S  T   +++ 
Sbjct: 67  DLFQSMIR-SRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIVINC 125

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             R +++  A+ ++  + ++   PD   ++ L+   C +G ++    ++ +M E K+  +
Sbjct: 126 FCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKVRPN 185

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             T + LV G C   +V EA  L+ RMV+ G      TY  ++  + + G    A+  + 
Sbjct: 186 LVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLR 245

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               + +K     +  +   L     ++EA  +  EM +  +K
Sbjct: 246 KMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIK 288



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 8/162 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCC----FNTANTFNFITNTENSLSVLSD 88
           P     + LVN    +  +     L+++     C    F      N I  + N++S L D
Sbjct: 184 PNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSAL-D 242

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R +   DK   P+   Y+ +I  LCK    DEAL + + M   G     IT++ ++  
Sbjct: 243 LLRKME--DKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGG 300

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
                R ++   L+  M    ++P++  ++ L+  +  +G L
Sbjct: 301 FCNAGRWDDGAQLLRDMITRNITPNVVTFSALIDCFVKEGKL 342



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 55/119 (46%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K D+A+ +   M       S I F  + S + + K+ E    L + M+   ++  +   +
Sbjct: 61  KKDDAVDLFQSMIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLS 120

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
            ++  +C +  L     VL K+ +     D  T+  LV G C  GRV EA V++ RMV+
Sbjct: 121 IVINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVE 179


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 13/190 (6%)

Query: 78  NTENSLSVLSDLCRTLARLD-----------KGF-PRKSAYDTLIGRLCKLKKIDEALRV 125
           N  N  +V+  LC+ L RLD           KG  P    Y +LI  LC   K ++A  +
Sbjct: 216 NAVNYRTVIDGLCK-LGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEEL 274

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           +  + + G   + + F+ IL  L +  R+ E+  L +++  I V+PD+  Y+ L+  YC 
Sbjct: 275 IFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCL 334

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G +     +L  M    L  D+ TY  L+ G C+  R+E+A  L + M  +G +    T
Sbjct: 335 AGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIIT 394

Query: 246 YAHVMGALLR 255
           Y  ++  L R
Sbjct: 395 YNIILHGLFR 404



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 4/209 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T+I  L K   +D+A      M +      A+T++ I++ L++ + M+ A  +
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + VM    V P+   YN ++  YC  G      G+ +KM  + +  D  TY++L+   C+
Sbjct: 69  LTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCK 124

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+  EA  +   MV  G     +TY  ++      G   +    + +     ++LD  +
Sbjct: 125 NGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHV 184

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F  L       E+ +E   +  +M ++ L
Sbjct: 185 FNILICAYTKQEKVDEVVLVFSKMRQQGL 213



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 19/228 (8%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSV 85
           P +  Y+ ++ A    + ++    +L       CF    T+N I +       +E ++ +
Sbjct: 44  PDAVTYNSIIAALSKAQAMDRAMEVLTVMVMPNCF----TYNSIMHGYCSSGQSEKAIGI 99

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
              +C      D   P    Y++L+  LCK  K  EA ++ D M + G      T+  +L
Sbjct: 100 FRKMCS-----DGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLL 154

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
                   + E   L+ +M +  +  D   +N L+ AY  +  +     V  KM ++ L 
Sbjct: 155 HGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLT 214

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAHVM 250
            +A  Y  ++ G C+ GR+++A +   +M+D G +   V+Y++  H +
Sbjct: 215 PNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHAL 262



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 1/152 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    ++T++  LCK  ++ E+ ++ D++   G     IT+  ++       +M
Sbjct: 279 LDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKM 338

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A  L+  M  + + PD   Y+ L+  YC    +     + K+ME   +  D  TY+ +
Sbjct: 339 DGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNII 398

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           + G  R  R   A  L  R+ + G  +  STY
Sbjct: 399 LHGLFRTRRTAAAKELYARITESGTQLELSTY 430



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 70/158 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y++++   C   + ++A+ +   M   G     +T++ ++  L +  +  EA  
Sbjct: 74  MPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARK 133

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M +  + PD+T Y  LL  Y  KG L     +L  M +  +  D   ++ L+    
Sbjct: 134 IFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYT 193

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +  +V+E  ++  +M   G +     Y  V+  L +LG
Sbjct: 194 KQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLG 231



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 90/200 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++ LI    K +K+DE + V   M + G   +A+ +  ++  L +  R+++A    E M
Sbjct: 184 VFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQM 243

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  ++P++  Y  L+ A C          ++ ++ ++ +  +   ++ ++   C+ GRV
Sbjct: 244 IDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRV 303

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            E+  L   +   G +    TY+ ++      G    A+K +       +K D+  + +L
Sbjct: 304 IESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTL 363

Query: 285 GSKLIGLERFNEANFILKEM 304
            +    + R  +A  + KEM
Sbjct: 364 INGYCKINRMEDALALFKEM 383



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C   K+D A++++  M   G    ++T+  +++   +  RME+A  L
Sbjct: 320 PDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALAL 379

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL-KKMEEEKLGADARTYDALVLGAC 219
            + M+   V+PD+  YN +L    F+   TA +  L  ++ E     +  TY+ +++   
Sbjct: 380 FKEMESNGVNPDIITYNIILHGL-FRTRRTAAAKELYARITESGTQLELSTYNIILMDFA 438

Query: 220 RAGRVEEAFVLLRRMV 235
           +   +   F   R  V
Sbjct: 439 KTNSLMMHFGCFRTYV 454



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 31/148 (20%)

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL----------- 216
           R  PD+ +YN ++     +G++        +M + ++  DA TY++++            
Sbjct: 6   RCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRA 65

Query: 217 --------------------GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
                               G C +G+ E+A  + R+M  DG      TY  +M  L + 
Sbjct: 66  MEVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKN 125

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           G   +A K       R +K D   +G+L
Sbjct: 126 GKCTEARKIFDSMVKRGLKPDITTYGTL 153


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  L+   C+ +K +EA ++++ M + G    A+T   +++   R  RM  A  +
Sbjct: 263 PATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRV 322

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK     P++  YN ++  +C  G +     +L +M E  +  D  TY+ L+ G C 
Sbjct: 323 FESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCI 382

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +E AF LLR M  +G +    TY  ++ AL + G   +A         R I+ ++  
Sbjct: 383 DGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVT 442

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F ++ + L    +F+ A   L++M
Sbjct: 443 FNTVINGLCKGGKFDVACTFLEKM 466



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 119/278 (42%), Gaps = 10/278 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y  LV+    E+  E    +LN+   +     A T   + N       +S   R 
Sbjct: 263 PATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRV 322

Query: 93  LARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              +  KG  P    Y+ ++   C + K+ +A+ ++D M E G     +T+    ++L R
Sbjct: 323 FESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTY----NLLIR 378

Query: 151 GK----RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           G+     +E A+ L+ +M+   ++ D   YN L+ A C  G +     +   +E   +  
Sbjct: 379 GQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRP 438

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           ++ T++ ++ G C+ G+ + A   L +MV  G +    TY+  +  L +     + + F+
Sbjct: 439 NSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFI 498

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                +D+K  T  +  +  +L     +  A  I  +M
Sbjct: 499 DEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQM 536



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 124/315 (39%), Gaps = 35/315 (11%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN--------------- 74
           P  PT A Y+ L+ A     DL   +  L+   R      A TFN               
Sbjct: 124 PPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVA 183

Query: 75  -----------FITNTENSLSVLSDLCRTLARLDKGF--------PRKSAYDTLIGRLCK 115
                      F  +  +  +++   C T  R+D+          P    +  L+  LC 
Sbjct: 184 QDLFDKMPLRGFSQDAVSYAALIEGFCET-GRVDEALELFRELEQPDMYTHAALVKGLCD 242

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
            ++ +E L ++  M E G+  +   +  ++ +  R ++ EEA  ++  M +  + P    
Sbjct: 243 ARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVT 302

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
              ++ AYC +G ++    V + M+ +    +  TY+A+V G C  G+V +A  LL +M 
Sbjct: 303 CTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMR 362

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
           + G      TY  ++      G+   A + + +  G  +  D   +  L   L    + +
Sbjct: 363 ECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVD 422

Query: 296 EANFILKEMNKRDLK 310
           EA  +   +  R ++
Sbjct: 423 EACSLFDGLEYRGIR 437



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y   I  LCK K   E L  +D M +     S + +  ++  L + +    A  +
Sbjct: 473 PDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRI 532

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M  +  SPD+  Y   + AYC +G L     V+ +M++  +  DA  Y+ L+ G   
Sbjct: 533 WGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTS 592

Query: 221 AGRVEEAFVLLRRM 234
            G+ + A  +L+ M
Sbjct: 593 IGKTDHAVTILKHM 606



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 74/206 (35%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C    I+ A R++ +M   G      T++ ++  L +  +++EA  L
Sbjct: 368 PDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSL 427

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + ++   + P+   +N ++   C  G        L+KM       D  TY   +   C+
Sbjct: 428 FDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCK 487

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
                E    +  M+          Y  V+  L +   Y  A +            D   
Sbjct: 488 TKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVT 547

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + +         R +EA  ++ EM K
Sbjct: 548 YTTSVRAYCNEGRLHEAENVVMEMKK 573



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/121 (19%), Positives = 53/121 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY  ++    + +++DE   +V  M E    L+   +  +++   + +   +AW L+  M
Sbjct: 668 AYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSM 727

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P+L +Y YLL+ +  +G       + + +  ++   D   +  ++ G  R G  
Sbjct: 728 IGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHP 787

Query: 225 E 225
           +
Sbjct: 788 D 788


>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
 gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
          Length = 536

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 20/187 (10%)

Query: 90  CRTLARLDK-----------GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           C  L RLDK           GF P  ++Y+TLI   C    +  A+++  +M + G    
Sbjct: 248 CCKLGRLDKANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGVPPD 307

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            +TF+ +++   +  +++EA  L   MK + +SP    YN L+  Y   GN    + + +
Sbjct: 308 VVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFE 367

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M   ++ AD  TY+AL+LG C+ G+ ++A  L+R + + G     ST++ ++       
Sbjct: 368 EMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALI------- 420

Query: 258 YYAQAVK 264
            Y Q V+
Sbjct: 421 -YGQCVQ 426



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 78/166 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TL+   CK+ K+ EA ++   M       + +T++ +++  ++    E    L
Sbjct: 306 PDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRL 365

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M   +V  D+  YN L+   C +G     + ++++++E+ L  +A T+ AL+ G C 
Sbjct: 366 FEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCV 425

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             + E AF + + M+    +    T+  ++        Y  AV+ +
Sbjct: 426 QKQSERAFQIYKSMIKSSFTPCDQTFRMLLSTFCENEDYDGAVQLL 471



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 108/246 (43%), Gaps = 2/246 (0%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C ++ + F+ +  T   L    +   T  R+ D GF P   + +  +  L    + D AL
Sbjct: 164 CDSSPHVFDLLFKTFAHLKKFRNASDTFCRMKDYGFLPTVESCNAYLSSLLNFSRGDIAL 223

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
                M       ++ T + ++    +  R+++A  + E M  +  SP++ +YN L+  Y
Sbjct: 224 AFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASYNTLIAGY 283

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C KG L++   +   ME+  +  D  T++ LV G C+ G+++EA  L   M     S   
Sbjct: 284 CNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTT 343

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++    + G      +         +K D   + +L   L    +  +A ++++E
Sbjct: 344 VTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRE 403

Query: 304 MNKRDL 309
           ++++ L
Sbjct: 404 LDEKGL 409


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 99/204 (48%), Gaps = 2/204 (0%)

Query: 96  LDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           ++KG PR     + ++I  LCK  ++ +A  + D+  + G     ITF+ ++       +
Sbjct: 537 INKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGK 596

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M++A+ +++ M+ + V PD+  YN LL  Y   G +     + ++M+ + +  +  TY  
Sbjct: 597 MDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGI 656

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++ G  RAGR   A      M++ G +V  S Y  ++G L R     +A+      G  +
Sbjct: 657 MLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMN 716

Query: 274 IKLDTELFGSLGSKLIGLERFNEA 297
           +K    +  ++ + +  ++R  EA
Sbjct: 717 VKFSITILNTMINAMYKVQRKEEA 740



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 80/188 (42%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y  +I     L ++ EA ++   M + G   + +T +  L+ L +  R +E
Sbjct: 329 DGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKE 388

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A    + M      PD+ +Y  LL  Y  +G      G+   M+   + A+   +  L+ 
Sbjct: 389 AAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIH 448

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
              + G V++A ++   M   G S    TY+ V+    R+G    A++       R I+ 
Sbjct: 449 AYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQP 508

Query: 277 DTELFGSL 284
           +T ++ S+
Sbjct: 509 NTAVYSSI 516



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/309 (18%), Positives = 122/309 (39%), Gaps = 18/309 (5%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           + R++  + LIP  V                 +A + D + A GH+ D+ +   LL+  A
Sbjct: 357 MFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYA 416

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122
            + CF  A+      N+  S  + ++                 +  LI    K   +D+A
Sbjct: 417 SEGCF--ADMIGLF-NSMKSNGIAANC--------------HVFTILIHAYAKRGMVDDA 459

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           + +   M + G     +T+  ++S  +R  R+ +A      M    + P+   Y+ ++  
Sbjct: 460 MLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQG 519

Query: 183 YCFKGNLTATSGVLKKMEEEKLG-ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
           +C  G L     ++ +M  + +   D   + +++   C+ GRV +A  +     D G+  
Sbjct: 520 FCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERP 579

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
              T+  ++     +G   +A K +       ++ D   + +L        R N+   + 
Sbjct: 580 GVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLF 639

Query: 302 KEMNKRDLK 310
           +EM ++ +K
Sbjct: 640 REMQRKGVK 648



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 106/264 (40%), Gaps = 4/264 (1%)

Query: 48  ERDLETVRYLLNKRARDCCFNTANTFNFITNT--ENSLSVLS-DLCRTLARLDKGF-PRK 103
            R  E V  LL++ +   C   A +++ +     +NS+S  + DL + +A+      P  
Sbjct: 206 NRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDV 265

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
            AY T+I       +  +A  +   M   G     +T++ I+  L + + M++A  ++  
Sbjct: 266 VAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQ 325

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M      PD   Y+ ++  Y   G L   + + ++M++  L  +  T ++ +   C+ GR
Sbjct: 326 MTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGR 385

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
            +EA      M   G      +Y  ++      G +A  +          I  +  +F  
Sbjct: 386 SKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTI 445

Query: 284 LGSKLIGLERFNEANFILKEMNKR 307
           L          ++A  I  EM ++
Sbjct: 446 LIHAYAKRGMVDDAMLIFTEMQQQ 469



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 4/165 (2%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y  ++G LC+    DEA+ +   +       S    + +++ + + +R EEA  L   
Sbjct: 687 SIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFAT 746

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +    + P+ + Y  ++      G +   + +   ME+  +   +R  + ++      G 
Sbjct: 747 ISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGE 806

Query: 224 VEEAFVLLRRMVDDGQSVLY--STYAHVMGALLRLGYYAQAVKFV 266
           + +A   L ++  DG+ +L   ST + ++    R G Y + +K +
Sbjct: 807 IAKAGNYLSKV--DGKRILLEASTTSLMLSLFSRKGKYQEDIKLL 849


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 85/182 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y +LI   C   K +EA R+ + M   G   + +TF+ ++ VL +  ++ EA  L
Sbjct: 275 PTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDL 334

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +EVM +  + P+L  YN L+  +C  G+L +   +   M  +    D   Y  L+ G C+
Sbjct: 335 LEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCK 394

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +VEEA  L   M+  G+     TY  ++  L + G    A K   V     I  D  +
Sbjct: 395 TSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYI 454

Query: 281 FG 282
           +G
Sbjct: 455 YG 456



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   CK  K++EA+++ + M + G      T+  +L+ L +G ++ +A  L
Sbjct: 380 PDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 439

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             VMK   +  DL  Y   L   C  G L     +  K++   +  D   ++ L+ G C+
Sbjct: 440 FGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCK 499

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AG++E A+ L  ++  +       TY  ++    R G   +A
Sbjct: 500 AGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKA 541



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y   +  LCK   + EA+ + + +      L    F+ ++  L +  ++E AW L E + 
Sbjct: 455 YGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLP 514

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  + PD+  YN ++  +C  G +   + + +KME+     D  TY  L+ G   + ++E
Sbjct: 515 QEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLE 574

Query: 226 EAFVLLRRMVD 236
           +   LL  MV 
Sbjct: 575 KVVELLHMMVQ 585



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 96/244 (39%), Gaps = 30/244 (12%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P +  + +    S  F   PT    +   ++A H + L       N   ++  FNT  +
Sbjct: 8   VPSASSIVKPNLSSSLFTHSPTIPSSNPHFSSAVHHKSL-------NVSPQN--FNTPIS 58

Query: 73  FNFITNTENSLSVLSDLCRT-------------LARLDKGFPRKSAYDTLIGRLCKLKKI 119
           F      +  LS+    C+T             L       P  S++  L+  L K+K  
Sbjct: 59  F------QQQLSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHY 112

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            +   + + M   G      T + +L+ L    R+ E   +M  +      PD+  Y  L
Sbjct: 113 SQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTL 172

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C +  ++  + +  +M++     +A TY  L+ G CR G +  A  L + M++D  
Sbjct: 173 IKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLND-- 230

Query: 240 SVLY 243
           S LY
Sbjct: 231 SSLY 234



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 117/276 (42%), Gaps = 21/276 (7%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKR-----ARDCCFNTANTFNFITNTENSLS 84
           P  P S++   L++     +    V YL N+      + DCC     T N + N   +++
Sbjct: 92  PTPPLSSF-THLLSGLAKIKHYSQVFYLYNQMRLSGISPDCC-----TLNILLNCLCNVN 145

Query: 85  VLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
            + +    +A  L +G+ P    Y TLI  LC   +I +A  +   M + G   +AIT+ 
Sbjct: 146 RVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYG 205

Query: 143 PILSVLTRGKRMEEAWGLMEVMKE------IRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
            ++  L R   +  A  L + M        I   P + +Y+ ++ A C          + 
Sbjct: 206 TLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLF 265

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           ++M+ + +     +Y +L+ G C  G+ EEA  L   MV+ G      T+  ++  L + 
Sbjct: 266 EEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKE 325

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSL--GSKLIG 290
           G   +A   + V   R I  +   + SL  G  L+G
Sbjct: 326 GKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVG 361


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 97/209 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  + +  LI  +CK  K   AL++ D M +     + IT+  I+S L + ++ + A+ 
Sbjct: 193 LPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYR 252

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   MK+    PD   YN LL  +C  G +    G+LK  E+++   D + Y  L+ G  
Sbjct: 253 LFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLF 312

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           RA R E+A V  R+M +         Y  +M  L + G +  A++ +     R +  DT 
Sbjct: 313 RARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTH 372

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRD 308
            + +L      L   +EA  +  E++K D
Sbjct: 373 CYNALIKGYCDLGLLDEAKSLHLEISKND 401



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 146/349 (41%), Gaps = 47/349 (13%)

Query: 5   RKLPTKFLIPQSVLVT---RSFTKSGAFPDE-------------PTSAYYDDLVNAAGHE 48
           RK+    + P  +L T   +  +K+G F D              P +  Y+ L+      
Sbjct: 325 RKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDL 384

Query: 49  RDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAY 106
             L+  + L  + +++ CF++A T+  +        ++ D  +    ++K   +P    +
Sbjct: 385 GLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTF 444

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEG-------------GFGLSAITFHPILSVLTRGKR 153
           + LI   CK   I++A  +   M  G                L   +   ++  L     
Sbjct: 445 NALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGL 504

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           + +A+ ++  + +   +P++  YN L+  +C  GN+     + K+++ + L  D+ TY  
Sbjct: 505 ILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGT 564

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG----YYAQAVKFVMVC 269
           L+ G   A R E+AF +L +++ +G + +   Y   M    R       ++  +K++   
Sbjct: 565 LINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSI 624

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDY 318
            GR    D+E+  S+       E F +    ++E  +  L+M FKL D+
Sbjct: 625 PGR----DSEVLKSVE------ENFEKGE--VEEAVRGLLEMDFKLNDF 661



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 128/300 (42%), Gaps = 6/300 (2%)

Query: 14  PQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFN-TANT 72
           P S+L  R F  +  F    +   ++ +++    +   E    +L K  + C F+ +A+ 
Sbjct: 70  PNSLLGFRFFIWASKFRRLRSWVSHNMIIDMLIKDNGFELYWQVL-KEIKRCGFSISADA 128

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           F  +      + ++     +   + K F   P    Y+T++  + + + +  AL + + M
Sbjct: 129 FTVLIQAYAKMDMIEKAVESFEMM-KDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRM 187

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            +     +  TF  ++  + +  + + A  + + M + R+ P+   Y  +++  C     
Sbjct: 188 LKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKA 247

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +   M++     D+ TY+AL+ G C+ GRV+EA  LL+    D   +    Y+ +
Sbjct: 248 DVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCL 307

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L R   +  A  +       +IK D  L+  +   L    +F +A  +L EM +R L
Sbjct: 308 IDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGL 367



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 68/160 (42%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           K  Y  LI  L + ++ ++A      M E       I +  ++  L++  + ++A  L+ 
Sbjct: 301 KQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLN 360

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M E  + PD   YN L+  YC  G L     +  ++ +    + A TY  L+ G CR+G
Sbjct: 361 EMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSG 420

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            V +A  +   M   G      T+  ++    + G   +A
Sbjct: 421 LVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKA 460



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 35/196 (17%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D GF P    Y+ LI   CK   I+ A ++   +   G    ++T+  +++ L    R E
Sbjct: 517 DSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREE 576

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT---------------SGVLKKME 200
           +A+ +++ + +   +P    Y   +T  C +  +T                 S VLK +E
Sbjct: 577 DAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVE 636

Query: 201 E--EK----------LGADAR-------TYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
           E  EK          L  D +        Y   ++G C+AGR+EEA  +   + +    V
Sbjct: 637 ENFEKGEVEEAVRGLLEMDFKLNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNVLV 696

Query: 242 LYSTYAHVMGALLRLG 257
              +   ++  LL++G
Sbjct: 697 TPPSCVKLIYRLLKVG 712


>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
          Length = 463

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 10/203 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAW 158
           P    Y+ L+  LCK K +      VD M +  F +    ++F  ++  +   K + EA 
Sbjct: 192 PDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDD-FDVKPDLVSFTILIDNVCNSKNLREAM 250

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  +      PD   YN ++  +C     +   GV KKM+EE +  D  TY+ L+ G 
Sbjct: 251 YLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGL 310

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-----CGGRD 273
            +AGRVEEA + L+ MVD G     +TY  +M  + R G    A+  +       C   D
Sbjct: 311 SKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPND 370

Query: 274 IKLDTELFGSLGSKLI--GLERF 294
              +T L G   ++L+  G+E +
Sbjct: 371 CTYNTLLHGLCKARLMDKGMELY 393



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T++   C L K  EA+ V   M E G     IT++ ++  L++  R+EEA   ++ M 
Sbjct: 268 YNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMV 327

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +    PD   Y  L+   C KG       +L++ME      +  TY+ L+ G C+A  ++
Sbjct: 328 DAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMD 387

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +   L   M   G  +  + YA ++ +L++ G  A+A +            D   + +L 
Sbjct: 388 KGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYSTLE 447

Query: 286 SKLIGLERFNEANFI 300
           + L  L++  E   +
Sbjct: 448 TTLKWLKKAKEQGLV 462



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 95/238 (39%), Gaps = 7/238 (2%)

Query: 74  NFITNTENSLSVLSDLCRTLARLDKGFPR----KSAYDTLIGRLCKLK--KIDEALRVVD 127
           N +  +  S++V+ D  +    + K  P     +S +  L+   C+     I    RV++
Sbjct: 89  NSVLQSYASIAVVDDTVKFFQHIMKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLN 148

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           +M   G     +T    +  L    R++EA  LM+ + E    PD   YN+LL   C   
Sbjct: 149 LMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCK 208

Query: 188 NLTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +L      + +M ++  +  D  ++  L+   C +  + EA  L+ ++ + G       Y
Sbjct: 209 DLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLY 268

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +M     L   ++AV          ++ D   + +L   L    R  EA   LK M
Sbjct: 269 NTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTM 326



 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 17/137 (12%)

Query: 45  AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS 104
           AG+E D  T   L+N   R                  SL  LS L    AR     P   
Sbjct: 329 AGYEPDTATYTSLMNGMCR---------------KGESLGALSLLEEMEAR--GCAPNDC 371

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TL+  LCK + +D+ + + ++M   G  L +  +  ++  L +  ++ EA+ + +  
Sbjct: 372 TYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYA 431

Query: 165 KEIRVSPDLTAYNYLLT 181
            + +   D +AY+ L T
Sbjct: 432 VDSKSLSDASAYSTLET 448


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 5/260 (1%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PD  T   Y+ ++ A    + ++    +LN   ++       T+N I +   S    
Sbjct: 226 GILPDVVT---YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 282

Query: 87  SDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +    L ++  D   P    Y  L+  LCK  +  EA ++ D M + G      T+  +
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTL 342

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L        + E  GL+++M    + PD   ++ L+ AY  +G +     V  KM ++ L
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGL 402

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +A TY A++   C++GRVE+A +   +M+D+G S     Y  ++  L     + +A +
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 462

Query: 265 FVMVCGGRDIKLDTELFGSL 284
            ++    R I L+T  F S+
Sbjct: 463 LILEMLDRGICLNTIFFNSI 482



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 1/161 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P    Y++LI  LC   K + A  ++  M + G  L+ I F+ I+    +  R+
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E+  L E+M  I V P++  YN L+  YC  G +     +L  M    L  +  TY  L
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G C+  R+E+A VL + M   G S    TY  ++  L +
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 3/188 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEE 156
            P   +Y+ L+  LC   +  EAL ++ +MA+   GG     +++  +++   +    ++
Sbjct: 155 IPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDK 214

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+     M +  + PD+  YN ++ A C    +     VL  M +  +  D  TY++++ 
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 274

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C +G+ +EA   L++M  DG      TY+ +M  L + G   +A K       R +K 
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP 334

Query: 277 DTELFGSL 284
           +   +G+L
Sbjct: 335 EITTYGTL 342



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 1/169 (0%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    Y+++I  LCK + +D+A+ V++ M + G     +T++ IL       + 
Sbjct: 223 LDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 282

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA G ++ M+   V PD+  Y+ L+   C  G       +   M +  L  +  TY  L
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTL 342

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           + G    G + E   LL  MV +G    +  ++ ++ A    G   QA+
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAM 391



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 12/216 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I    K    D+A      M + G     +T++ I++ L + + M++A  +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V PD   YN +L  YC  G      G LKKM  + +  D  TY  L+   C+
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM------GALLRLGYYAQAVKFVMVCGGRDI 274
            GR  EA  +   M   G     +TY  ++      GAL+ +      +  +MV  G  I
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM----HGLLDLMVRNG--I 367

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             D  +F  L        + ++A  +  +M ++ L 
Sbjct: 368 HPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLN 403



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ ++M   G   + IT++ +++     
Sbjct: 465 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLA 524

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + + P+   Y+ L+  YC    +     + K+ME   +  D  TY
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G  +  R   A  L  R+ + G  +  STY  ++  L +      A++       
Sbjct: 585 NIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCL 644

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D+KL+   F  +   L+ + R +EA
Sbjct: 645 MDLKLEARTFNIMIDALLKVGRNDEA 670



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 89/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI       K+D+A+ V   M + G   +A+T+  ++ +L +  R+E+A   
Sbjct: 369 PDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  +SP    YN L+   C          ++ +M +  +  +   +++++   C+
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 488

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY  ++      G   +A+K +       +K +T  
Sbjct: 489 EGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +    + R  +A  + KEM
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEM 572



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 97/256 (37%), Gaps = 39/256 (15%)

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           A  D+  P    Y  LIG  C+  ++D     +  + + GF + AI F P+L  L   KR
Sbjct: 78  AGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKR 137

Query: 154 MEEAWGL-MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA------ 206
             +A  + +  M E+   P++ +YN LL   C +        +L  M +++ G       
Sbjct: 138 TSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVV 197

Query: 207 --------------------------------DARTYDALVLGACRAGRVEEAFVLLRRM 234
                                           D  TY++++   C+A  +++A  +L  M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           V +G      TY  ++      G   +A+ F+       ++ D   +  L   L    R 
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC 317

Query: 295 NEANFILKEMNKRDLK 310
            EA  I   M KR LK
Sbjct: 318 MEARKIFDSMTKRGLK 333



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 1/163 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK K  D+AL++   +      L A TF+ ++  L +  R +EA  L   
Sbjct: 617 STYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVA 676

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
                + P+   Y  +      +G L     +   ME+     D+   + +V    + G 
Sbjct: 677 FSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGE 736

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  A   L  M+D+    L ++ A +   LL  G Y +  +F+
Sbjct: 737 ITRAGTYL-SMIDEKHFSLEASTASLFIDLLSGGKYQEYYRFL 778


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 2/205 (0%)

Query: 96  LDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           + KG  R +   + ++I  LC   ++ +A  V +++   G   + +TF+ ++       +
Sbjct: 504 MSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGK 563

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           ME+A+G+++ M  + + PD+   N L++ YC  G +     + ++M  +K+     TY+ 
Sbjct: 564 MEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNI 623

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++ G  RAGR   A  +   M+D G +V   TY  ++  L R     +A+      G  D
Sbjct: 624 VLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMD 683

Query: 274 IKLDTELFGSLGSKLIGLERFNEAN 298
            K D  +  ++ + L  + R  EAN
Sbjct: 684 CKFDITILNTMINALYKVRRREEAN 708



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 108 TLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           T +  LC  K+ DEA+ V+   M+E      AI+++ ++  L    R +EA  +++ M +
Sbjct: 164 TFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAK 223

Query: 167 I--RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
              R SPD+ ++N ++  +  +G ++    +  +M ++ +  D  TY+++V   C+A  +
Sbjct: 224 EGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAM 283

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++A  +LR+MVD G      TY  ++      G++ ++ K       + +  DT  F S 
Sbjct: 284 DKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSF 343

Query: 285 GSKLIGLERFNEANFILKEMNKR 307
            S L    R  +A  I + M  +
Sbjct: 344 MSSLCKHGRSKDAEEIFQYMTTK 366



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P  + Y +LI   C    + +A   + ++M++G    + + F  I+  L    R+ +A  
Sbjct: 475 PNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQD 534

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +  ++  I   P +  +N L+  YC  G +    GVL  M    +  D  T + LV G C
Sbjct: 535 VFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYC 594

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLD 277
           ++G++++  +L R M+         TY  V+  LLR G  + A K    M+  G  + +D
Sbjct: 595 KSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDID 654

Query: 278 T 278
           T
Sbjct: 655 T 655



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/270 (18%), Positives = 114/270 (42%), Gaps = 10/270 (3%)

Query: 48  ERDLETVRYLLNKRARDCCFNTANTFNFI-------TNTENSLSVLSDLCRTLARLDKGF 100
           +R  E V  LL++ +   C   A ++N +       + ++ +L ++  + +   R     
Sbjct: 173 KRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCS--- 229

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++T+I    K  ++ +A  + + M + G      T++ I+  L + + M++A  +
Sbjct: 230 PDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFV 289

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V PD   YN ++  Y   G+   ++ + +KM  + L  D  T+ + +   C+
Sbjct: 290 LRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCK 349

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR ++A  + + M   G      +Y+ ++      G +A           + I  +   
Sbjct: 350 HGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHC 409

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              L S        +EA  +  EM  + ++
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVR 439



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 106/276 (38%), Gaps = 61/276 (22%)

Query: 3   LLRKLPTKFLIPQSVLVTR---SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN 59
           + RK+ +K LIP +V  +    S  K G   D      Y   +   GH  D+ +   LL+
Sbjct: 324 MFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQY---MTTKGHMPDIVSYSILLH 380

Query: 60  KRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKK 118
             A                TE   + +++L  ++A  DKG        + LI    K   
Sbjct: 381 GYA----------------TEGRFADMNNLFHSMA--DKGIVSNCHCINILISAHAKRGM 422

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +DEA+ V   M   G   + +T+  ++S   R  R+ +A      M  I + P+   Y+ 
Sbjct: 423 MDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHS 482

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLG--------------------ADAR--------- 209
           L+  +C  G+L      + +M  + L                      DA+         
Sbjct: 483 LIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHI 542

Query: 210 -------TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
                  T+++L+ G C  G++E+AF +L  MV  G
Sbjct: 543 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVG 578



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 1/170 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG  P    Y+ +I          E+ ++   M   G     +TF   +S L +  R 
Sbjct: 294 VDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRS 353

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  + + M      PD+ +Y+ LL  Y  +G     + +   M ++ + ++    + L
Sbjct: 354 KDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINIL 413

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +    + G ++EA ++   M   G      TY+ ++ A  R+G  A A++
Sbjct: 414 ISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAME 463



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/244 (18%), Positives = 96/244 (39%), Gaps = 5/244 (2%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           + G  PD  T   Y+ +V+A    R ++   ++L +           T+N I +  +   
Sbjct: 260 QKGVVPDVGT---YNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSG 316

Query: 85  VLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
              +  +   ++  KG  P    + + +  LCK  +  +A  +   M   G     +++ 
Sbjct: 317 HWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYS 376

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +L       R  +   L   M +  +  +    N L++A+  +G +     V  +M+ +
Sbjct: 377 ILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQ 436

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            +  +  TY  L+   CR GR+ +A     +M+  G     + Y  ++      G   +A
Sbjct: 437 GVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKA 496

Query: 263 VKFV 266
            +F+
Sbjct: 497 KEFI 500


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I R C   K++ A  + D M E G   + +T++ ++  L + +R+ EA  L
Sbjct: 267 PNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERL 326

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  MK   +SP+L +YN L+  YC  GNL   S +  +M+         TY+ L+ G   
Sbjct: 327 MCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSE 386

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A        ++R M   G S    TY  +M AL+R     +A +         +  D  +
Sbjct: 387 AKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYI 446

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +G L   L  +    EA+ + K +++  LK
Sbjct: 447 YGVLIHGLCVVGDMKEASKLFKSLDEMHLK 476



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 8/211 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI----TNTENSLSVLSD 88
           P    Y+ L++      +L+    L N+        +  T+N +    +  +NS  V +D
Sbjct: 337 PNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGV-TD 395

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           + R +    +G  P K  Y  L+  L +   I++A ++   M + G       +  ++  
Sbjct: 396 MVREMEA--RGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHG 453

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L     M+EA  L + + E+ + P+   YN ++  YC +G+      +LK+M E  +  +
Sbjct: 454 LCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPN 513

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             +Y++ +   C+  +  EA VLL+ M++ G
Sbjct: 514 VASYNSTIQILCKDEKWTEAEVLLKDMIELG 544



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 92  TLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           T   LD  FP     ++ +I    + +  ++AL   + M   G    + TF+ +L +L +
Sbjct: 84  TQPHLDS-FPTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIK 142

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
               E+AW +    K   V  D+ ++  ++   C  G L     VL +MEE  L  +   
Sbjct: 143 SNFFEKAWRVFNETKG-NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVV 201

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           Y  L+ G C+ G +E    L  +M +        TY  ++    ++G
Sbjct: 202 YTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMG 248



 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 2/152 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           ++  +I   C++  +D+   V+  M E G   + + +  ++    +   +E    L   M
Sbjct: 166 SFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKM 225

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL-KKMEEEKLGADARTYDALVLGACRAGR 223
            E+ V  +   Y  L+  + FK  L      L +KM+   +  +  TY++++   C  G+
Sbjct: 226 GELDVVANQYTYTVLINGF-FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGK 284

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +  AF L   M + G +    TY  ++G L +
Sbjct: 285 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQ 316



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 42/82 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I   CK      ALR++  M E G   +  +++  + +L + ++  EA  L
Sbjct: 477 PNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVL 536

Query: 161 MEVMKEIRVSPDLTAYNYLLTA 182
           ++ M E+ + P ++ +N +  A
Sbjct: 537 LKDMIELGLKPSISIWNMISKA 558


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 6/210 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y+T++  LCK  KID AL +++ MA   G GL+ + +  ++  L +  R +EA  
Sbjct: 255 PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARS 314

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +ME M      PD+  Y+ L+   C  G +      +++M  E    +A TY +LV G C
Sbjct: 315 VMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLC 374

Query: 220 RAGRVEEAFVLLRRMVDDGQSVL-----YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
             GR+ EA  ++  M   G          STY  ++G L + G    A+KF      +  
Sbjct: 375 SCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGC 434

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             D   + ++   L    R  +A  IL E+
Sbjct: 435 DPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 1/200 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+TL+  LCK  ++ EA ++++ M   G     + +   +  L +  ++ +A  ++E M+
Sbjct: 190 YNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMR 249

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGACRAGRV 224
           +    P++  YN +L   C  G +     ++++M   +  G +   Y  +V G C+ GR 
Sbjct: 250 DSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRT 309

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA  ++  M   G      TY+ ++  L + G   +AV+ V        K +   + SL
Sbjct: 310 QEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSL 369

Query: 285 GSKLIGLERFNEANFILKEM 304
              L    R  EA  +++EM
Sbjct: 370 VHGLCSCGRLAEAERMVEEM 389



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 1/207 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  ++  LCK  ++ EAL +++ M   G   + ITF+ ++S   R K +E A  L
Sbjct: 115 PDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSL 174

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    V  D+  YN L+   C  G L     +L++M+      D   Y + V G C+
Sbjct: 175 LQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCK 234

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD-IKLDTE 279
           +G+V +A  +L +M D        TY  ++  L + G    A++ +      D   L+  
Sbjct: 235 SGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVV 294

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            + ++   L  L R  EA  +++ M +
Sbjct: 295 GYSTVVDGLCKLGRTQEARSVMEAMAR 321



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 3/159 (1%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           ++R  +  P    Y TL+   CK  K++E+  ++  +   G    A+ +  +++ L +  
Sbjct: 72  ISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSA 131

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           R+ EA  L+E M      P L  +N L++  C + NL     +L+KM    + AD  TY+
Sbjct: 132 RLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYN 191

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAH 248
            L+ G C+AGR++EA  LL RM   G +   V YS++ +
Sbjct: 192 TLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVY 230



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 2/206 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+    K  +  +  R+++ MA      + ++++ +L  L + +R  EA  L
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 161 MEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
           +  M  +  R +PD+  Y+ LL+ YC  G +  +  +LK++    L  DA  Y  +V   
Sbjct: 68  VRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASL 127

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C++ R+ EA  LL  M+  G      T+  ++    R      A   +       +K D 
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADV 187

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
             + +L   L    R  EA  +L+ M
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERM 213


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 97/212 (45%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    Y TLI   C+   I+EA+++   M   G      T++ IL  L    +M+E 
Sbjct: 284 QATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEV 343

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M E +V  D    N L+ AYC +G++T+   V KKM E  L  +  TY AL+ G
Sbjct: 344 NQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHG 403

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+A  ++EA     +MVD G S  YS ++ ++    +       +        R +  D
Sbjct: 404 FCKAKELDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPD 463

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             ++ SL  +L      ++A  +  +M  + L
Sbjct: 464 KAVYRSLIRRLCRKGLVDQAQKVFDQMQSKGL 495



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 92/210 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A   L+  L + +    A RV D MA  G  +S   ++ +L V  +      A  L
Sbjct: 147 PDAHACTALLTALARARMTATARRVFDEMARAGLAVSTHVYNAMLHVCLKAGDAARAEAL 206

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    V  D  +YN ++  YC KG       V  +M++E + AD  T+++L+ G C+
Sbjct: 207 VTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCK 266

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV+EA  L   M     +    TY  ++    R G   +AVK         +      
Sbjct: 267 YGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVAT 326

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + ++  KL    +  E N +L EM++R ++
Sbjct: 327 YNAILRKLCEDGKMKEVNQLLNEMDERKVQ 356



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 2/174 (1%)

Query: 93  LARLDK-GFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           + R+D  G P  + +Y+T+I   CK     EA+ V D M + G     +T++ ++  L +
Sbjct: 207 VTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCK 266

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R++EA  L   M   + +PD   Y  L+  YC  GN+     +  +ME   +     T
Sbjct: 267 YGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVAT 326

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           Y+A++   C  G+++E   LL  M +      + T   ++ A  + G+   A K
Sbjct: 327 YNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACK 380



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 85/222 (38%), Gaps = 40/222 (18%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P  A Y+ ++     +  ++ V  LLN+           T N + N       ++  C+ 
Sbjct: 322 PGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACKV 381

Query: 93  LARL-DKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
             ++ + G    +  Y  LI   CK K++DEA      M + GF                
Sbjct: 382 KKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGF---------------- 425

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
                              SP+ + +++L+  +C K N  A   +  ++ +  L  D   
Sbjct: 426 -------------------SPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAV 466

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDD---GQSVLYSTYAHV 249
           Y +L+   CR G V++A  +  +M      G S++Y+T A+ 
Sbjct: 467 YRSLIRRLCRKGLVDQAQKVFDQMQSKGLVGDSLVYATLAYT 508



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 6/161 (3%)

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-GVLKKMEEEKLG 205
           VL +  R  +A  + + M+   ++PD  A   LLTA   +  +TAT+  V  +M    L 
Sbjct: 123 VLAQSARPHDALRVFDQMRARGLAPDAHACTALLTALA-RARMTATARRVFDEMARAGLA 181

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAV 263
                Y+A++    +AG    A  L+ RM   G  +   +Y  V+    + G  Y A  V
Sbjct: 182 VSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCV 241

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +  M   G  I+ DT  + SL   L    R  EA  +  EM
Sbjct: 242 RDRMDKEG--IRADTVTWNSLIHGLCKYGRVKEAAQLFTEM 280


>gi|145358679|ref|NP_198856.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171831|sp|Q9FND8.1|PP409_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g40400
 gi|10178151|dbj|BAB11596.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|110742507|dbj|BAE99171.1| hypothetical protein [Arabidopsis thaliana]
 gi|332007160|gb|AED94543.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 610

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 10/185 (5%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +D L+    KL  ++E  RV   + + GF +S +T + +L+ L +   ME+ W +  VM
Sbjct: 168 VFDMLVKGYLKLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYSVM 227

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
             + + P+   +N L   +C   N       L+KMEEE    D  TY+ LV   CR GR+
Sbjct: 228 CRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRL 287

Query: 225 EEAFVLL-----RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +EAF L      RR+V D       TY  ++  L + G   +A +       R IK D  
Sbjct: 288 KEAFYLYKIMYRRRVVPD-----LVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCM 342

Query: 280 LFGSL 284
            + +L
Sbjct: 343 SYNTL 347



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 73/159 (45%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +++  +V  +M   G   +  TF+ + +V        E    +E M+E    PDL  YN 
Sbjct: 217 MEDCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNT 276

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+++YC +G L     + K M   ++  D  TY +L+ G C+ GRV EA     RMVD G
Sbjct: 277 LVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRG 336

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
                 +Y  ++ A  + G   Q+ K +    G  +  D
Sbjct: 337 IKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPD 375



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 3/197 (1%)

Query: 91  RTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           +T  R+ D+G  P   +Y+TLI   CK   + ++ +++  M          T   I+   
Sbjct: 327 QTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGF 386

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGAD 207
            R  R+  A   +  ++ ++V       ++L+ + C +G   A   +L ++ EEE   A 
Sbjct: 387 VREGRLLSAVNFVVELRRLKVDIPFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAK 446

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY+ L+    R   +EEA VL  ++ +  Q +   TY  ++G L R+G   +A   + 
Sbjct: 447 PETYNNLIESLSRCDAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLMA 506

Query: 268 VCGGRDIKLDTELFGSL 284
                ++K D+ + G+L
Sbjct: 507 EMFDSEVKPDSFICGAL 523



 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 50/121 (41%)

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
           +   Y+ LI  L +   I+EAL +   +      L A T+  ++  L R  R  EA  LM
Sbjct: 446 KPETYNNLIESLSRCDAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLM 505

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
             M +  V PD      L+  YC + +      +L     E    D  +Y++LV   C  
Sbjct: 506 AEMFDSEVKPDSFICGALVYGYCKELDFDKAERLLSLFAMEFRIFDPESYNSLVKAVCET 565

Query: 222 G 222
           G
Sbjct: 566 G 566



 Score = 37.7 bits (86), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 2/140 (1%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRG 151
           L RL    P +   D LI  LC+  K   A  ++D I+ E G      T++ ++  L+R 
Sbjct: 402 LRRLKVDIPFEVC-DFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRC 460

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +EEA  L   +K      D   Y  L+   C  G       ++ +M + ++  D+   
Sbjct: 461 DAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFIC 520

Query: 212 DALVLGACRAGRVEEAFVLL 231
            ALV G C+    ++A  LL
Sbjct: 521 GALVYGYCKELDFDKAERLL 540


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 127/282 (45%), Gaps = 15/282 (5%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENS 82
           PD  T     D +   G  ++ + V  ++ K   +    T NT        N +   ++ 
Sbjct: 261 PDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHV 320

Query: 83  LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           LS++S +        +  P   +Y+ +I   CK+K +DEAL +   M   G     +T++
Sbjct: 321 LSIISRM--------RVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYN 372

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++  L +  R+  AW L++ M    +  D+  YN L+  +C   ++     ++KK++E 
Sbjct: 373 SLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEH 432

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            +  +  TY+ L+ G C+ G+++ A  + + ++  G +V   TY  ++  L + G + +A
Sbjct: 433 GIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEA 492

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              +       I  D   + ++   L   +   +A  +L+EM
Sbjct: 493 EVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREM 534



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + +LI   C + K  +A R+ + M        A TF+ ++  L +  +++EA  +
Sbjct: 226 PTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNV 285

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + VM +  V P +  YN L+  YC    +     VL  +   ++  ++R+Y+ ++ G C+
Sbjct: 286 IAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCK 345

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V+EA  L   M   G +    TY  ++  L + G    A + V       I  D   
Sbjct: 346 IKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVT 405

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + SL       +  ++A  ++K++ +  ++
Sbjct: 406 YNSLIDVFCKNQHVDKAIALVKKIKEHGIQ 435



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 70/146 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  LI  LCK+ +   AL+V+  +       + + +  I+  L + K + +A+GL   M
Sbjct: 160 TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEM 219

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
              R+ P +  ++ L+  +C  G       +  +M  + +  DA T++ LV   C+ G++
Sbjct: 220 IVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKI 279

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVM 250
           +EA  ++  M+ +G      TY  +M
Sbjct: 280 KEAKNVIAVMMKEGVEPTVVTYNTLM 305



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 1/154 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y++LI   CK + +D+A+ +V  + E G   +  T++ ++  L +G +++ A  + + +
Sbjct: 405 TYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDL 464

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                + +   YN ++   C +G       +L KME+  +  DA TY+ ++         
Sbjct: 465 LIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDEN 524

Query: 225 EEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLG 257
           E+A  LLR MV  G  V  +     ++G  L LG
Sbjct: 525 EKAQKLLREMVIKGVVVYAFEIRRTLVGRTLNLG 558



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR---V 169
           LC   K++EAL   D +   GF L+ +T+  +++ L    +M +    ++V+++I    V
Sbjct: 133 LCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLC---KMGQTRAALQVLRQIEGKLV 189

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           + ++  Y+ ++   C    +T   G+  +M  +++     T+ +L+ G C  G+ ++AF 
Sbjct: 190 NTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFR 249

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           L   MV    +    T+  ++ AL + G   +A   + V
Sbjct: 250 LFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAV 288



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%)

Query: 137 SAITFHPILSVLTRGK-RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           S + F+ IL+ L + K        L   M+   V PDL   + L+  YC  G +T    V
Sbjct: 65  SIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAFSV 124

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             K+              L +G C  G+V EA +    ++  G  + + TY  ++  L +
Sbjct: 125 FAKI--------------LKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCK 170

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +G    A++ +    G+ +  +  ++ ++
Sbjct: 171 MGQTRAALQVLRQIEGKLVNTNVVMYSTI 199


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 99/200 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ +I  LC+  +   AL VV  M + G+    +T   +++   +G R+ +A  L+  M
Sbjct: 106 SYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM 165

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +E+   PD+  YN ++   C  G +     +  +ME + + ADA TY++LV G C +GR 
Sbjct: 166 EEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRW 225

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A  L+R MV         T+  V+   ++ G +++A+K       R +  D   + SL
Sbjct: 226 SDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL 285

Query: 285 GSKLIGLERFNEANFILKEM 304
            + L    R +EA  +L  M
Sbjct: 286 INGLCMHGRVDEAKQMLDLM 305



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 3/209 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC   ++DEA +++D+M   G     +T++ +++   + KR++E   L
Sbjct: 277 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 336

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  +  D   YN ++  Y   G   A   +  +M+      + RTY  L+ G C 
Sbjct: 337 FREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCM 393

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             RVE+A VL   M      +  +TY  V+  + ++G    A         + +K D   
Sbjct: 394 NWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVS 453

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + ++ S      ++++++ + ++M +  L
Sbjct: 454 YTTMISGFCRKRQWDKSDLLYRKMQEDGL 482



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 92/210 (43%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    +  ++ ++ K K  D  + +   M   G G    +++ +++ L R  R   A
Sbjct: 64  RPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIA 123

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++  M +    PD+   + L+  +C    +     ++ KMEE     D   Y+ ++ G
Sbjct: 124 LSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDG 183

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           +C+ G V +A  L  RM  DG      TY  ++  L   G ++ A + +     RDI  +
Sbjct: 184 SCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPN 243

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
              F ++    +   +F+EA  + +EM +R
Sbjct: 244 VITFTAVIDVFVKEGKFSEAMKLYEEMTRR 273



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 1/210 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P    Y+T+I   CK+  +++A+ + D M   G    A+T++ +++ L    R  +A
Sbjct: 169 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             LM  M    + P++  +  ++  +  +G  +    + ++M    +  D  TY++L+ G
Sbjct: 229 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 288

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GRV+EA  +L  MV  G      TY  ++    +     +  K       R +  D
Sbjct: 289 LCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 348

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
           T  + ++        R + A  I   M+ R
Sbjct: 349 TITYNTIIQGYFQAGRPDAAQEIFSRMDSR 378



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 32/171 (18%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL-------------- 145
            P    Y+TLI   CK K++DE  ++   MA+ G     IT++ I+              
Sbjct: 311 LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQE 370

Query: 146 --------------SVLTRG----KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
                         S+L  G     R+E+A  L E M++  +  D+T YN ++   C  G
Sbjct: 371 IFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIG 430

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           N+     + + +  + L  D  +Y  ++ G CR  + +++ +L R+M +DG
Sbjct: 431 NVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 481



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 75/173 (43%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S + F  +LS + + K  +    L   M+   +  DL +YN ++   C          V+
Sbjct: 68  SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVV 127

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            KM +     D  T  +L+ G C+  RV +A  L+ +M + G       Y  ++    ++
Sbjct: 128 GKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKI 187

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           G    AV+         ++ D   + SL + L    R+++A  ++++M  RD+
Sbjct: 188 GLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI 240



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 4/178 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PD  T   Y+ L+N     + ++    L  + A+        T+N I          
Sbjct: 309 GCLPDVVT---YNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRP 365

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
                  +R+D   P    Y  L+  LC   ++++AL + + M +    L   T++ ++ 
Sbjct: 366 DAAQEIFSRMDSR-PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIH 424

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
            + +   +E+AW L   +    + PD+ +Y  +++ +C K     +  + +KM+E+ L
Sbjct: 425 GMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 482


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHE-RDLETVRYLLNKRARDCCFNTANTF 73
           Q++ +       G  PD  T   Y+ +VN    E R  + + +L N  +  C  NT  ++
Sbjct: 85  QAMKLLDEMRDKGCTPDIVT---YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTV-SY 140

Query: 74  NFITNTENSLSVLSDLCRTLARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAE 131
           N +     +     D    +  +  KG P     ++ LI  LC+   ++ AL V++ + +
Sbjct: 141 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 200

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G   ++++++P+L    + K+M++A   +++M      PD+ +YN LLTA C  G +  
Sbjct: 201 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 260

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +L +++++       +Y+ ++ G  +AG+ +EA  LL  MV  G      TY+ +  
Sbjct: 261 AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA 320

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            L R      A++         I+ +T L+ ++   ++GL +  E +
Sbjct: 321 GLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI---ILGLCKRRETH 364



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 42/291 (14%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN------------- 78
           EP +  Y+ ++         E    L+ +  +  C     TFN + +             
Sbjct: 134 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALE 193

Query: 79  ----------TENSLS---VLSDLCRTLARLDKG------------FPRKSAYDTLIGRL 113
                     T NSLS   +L   C+   ++DK             +P   +Y+TL+  L
Sbjct: 194 VLEQIPKYGCTPNSLSYNPLLHAFCKQ-KKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 252

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           C+  ++D A+ ++  + + G     I+++ ++  LT+  + +EA  L+  M    + PD+
Sbjct: 253 CRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDI 312

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
             Y+ +    C +  +        K+++  +  +   Y+A++LG C+      A  L   
Sbjct: 313 ITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAY 372

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV-MVC--GGRDIKLDTELF 281
           M+ +G     STY  ++  L   G   +A   +  +C   G +I LD  L 
Sbjct: 373 MIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRAGEEILLDVHLI 423



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 3/149 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY+ ++   C   ++D A R+V   AE      A T++ ++  L    R   A  +++ M
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLV---AEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEM 58

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
              R  PD+  Y  LL A C +        +L +M ++    D  TY+ +V G C+ GRV
Sbjct: 59  LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 118

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           ++A   L+ +   G      +Y  V+  L
Sbjct: 119 DDAIEFLKNLPSYGCEPNTVSYNIVLKGL 147



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LC   +   AL V+D M         +T+  +L    +    ++A  L
Sbjct: 30  PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 89

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++   +PD+  YN ++   C +G +      LK +       +  +Y+ ++ G C 
Sbjct: 90  LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 149

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           A R E+A  L+  M   G      T+  ++  L R G    A++ +
Sbjct: 150 AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 195



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 87/188 (46%), Gaps = 5/188 (2%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           T N+L+VL ++ R      +  P    Y  L+   CK     +A++++D M + G     
Sbjct: 48  TANALAVLDEMLRR-----RCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDI 102

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T++ +++ + +  R+++A   ++ +      P+  +YN +L   C          ++ +
Sbjct: 103 VTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGE 162

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M ++    +  T++ L+   CR G VE A  +L ++   G +    +Y  ++ A  +   
Sbjct: 163 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKK 222

Query: 259 YAQAVKFV 266
             +A+ F+
Sbjct: 223 MDKAMAFL 230



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 64/145 (44%)

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
           ++ E+ V PD   YN L+   C +G       VL +M   +   D  TY  L+   C+  
Sbjct: 22  LVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRS 81

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
             ++A  LL  M D G +    TY  V+  + + G    A++F+        + +T  + 
Sbjct: 82  GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYN 141

Query: 283 SLGSKLIGLERFNEANFILKEMNKR 307
            +   L   ER+ +A  ++ EM ++
Sbjct: 142 IVLKGLCTAERWEDAEELMGEMGQK 166


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 5/260 (1%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PD  T   Y+ ++ A    + ++    +LN   ++       T+N I +   S    
Sbjct: 226 GILPDVVT---YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 282

Query: 87  SDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +    L ++  D   P    Y  L+  LCK  +  EA ++ D M + G      T+  +
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTL 342

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L        + E  GL+++M    + PD   ++ L+ AY  +G +     V  KM ++ L
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 402

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +A TY A++   C++GRVE+A +   +M+D+G S     Y  ++  L     + +A +
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 462

Query: 265 FVMVCGGRDIKLDTELFGSL 284
            ++    R I L+T  F S+
Sbjct: 463 LILEMLDRGICLNTIFFNSI 482



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 1/161 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P    Y++LI  LC   K + A  ++  M + G  L+ I F+ I+    +  R+
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E+  L E+M  I V P++  YN L+  YC  G +     +L  M    L  +  TY  L
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G C+  R+E+A VL + M   G S    TY  ++  L +
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 1/169 (0%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    Y+++I  LCK + +D+A+ V++ M + G     +T++ IL       + 
Sbjct: 223 LDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 282

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA G ++ M+   V PD+  Y+ L+   C  G       +   M +  L  +  TY  L
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTL 342

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           + G    G + E   LL  MV +G    +  ++ ++ A  + G   QA+
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAM 391



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 3/188 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEE 156
            P   +Y+ L+  LC   +  EAL ++ +MA+   GG     +++  +++   +    ++
Sbjct: 155 IPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDK 214

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+     M +  + PD+  YN ++ A C    +     VL  M +  +  D  TY++++ 
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 274

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C +G+ +EA   L++M  DG      TY+ +M  L + G   +A K       R +K 
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP 334

Query: 277 DTELFGSL 284
           +   +G+L
Sbjct: 335 EITTYGTL 342



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 67/150 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I    K    D+A      M + G     +T++ I++ L + + M++A  +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V PD   YN +L  YC  G      G LKKM  + +  D  TY  L+   C+
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
            GR  EA  +   M   G     +TY  ++
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLL 343



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ ++M   G   + IT++ +++     
Sbjct: 465 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLA 524

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + + P+   Y+ L+  YC    +     + K+ME   +  D  TY
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G  +  R   A  L  R+ + G  +  STY  ++  L +      A++       
Sbjct: 585 NIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCL 644

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D+KL+   F  +   L+ + R +EA
Sbjct: 645 MDLKLEARTFNIMIDALLKVGRNDEA 670



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 90/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+D+A+ V   M + G   +A+T+  ++ +L +  R+E+A   
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  +SP    YN L+   C          ++ +M +  +  +   +++++   C+
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 488

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY  ++      G   +A+K +       +K +T  
Sbjct: 489 EGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +    + R  +A  + KEM
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEM 572



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 97/256 (37%), Gaps = 39/256 (15%)

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           A  D+  P    Y  LIG  C+  ++D     +  + + GF + AI F P+L  L   KR
Sbjct: 78  AGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKR 137

Query: 154 MEEAWGL-MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA------ 206
             +A  + +  M E+   P++ +YN LL   C +        +L  M +++ G       
Sbjct: 138 TSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVV 197

Query: 207 --------------------------------DARTYDALVLGACRAGRVEEAFVLLRRM 234
                                           D  TY++++   C+A  +++A  +L  M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           V +G      TY  ++      G   +A+ F+       ++ D   +  L   L    R 
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC 317

Query: 295 NEANFILKEMNKRDLK 310
            EA  I   M KR LK
Sbjct: 318 MEARKIFDSMTKRGLK 333



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 1/163 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK K  D+AL++   +      L A TF+ ++  L +  R +EA  L   
Sbjct: 617 STYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVA 676

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
                + P+   Y  +      +G L     +   ME+     D+   + +V    + G 
Sbjct: 677 FSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGE 736

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  A   L  M+D+    L ++ A +   LL  G Y +  +F+
Sbjct: 737 ITRAGTYL-SMIDEKHFSLEASTASLFIDLLSGGKYQEYYRFL 778


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 30/258 (11%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLET-VRYLLNKRARDCCFNTAN 71
           I ++ L+ +     G FPD               HE  L++ +RY   ++  D    +  
Sbjct: 663 IDEANLLMQKMVDHGFFPD---------------HECFLKSDIRYAAIQKIADSLDESCK 707

Query: 72  TFNFITNTENSLSVLSDLCRTLARLD-----------KGF-PRKSAYDTLIGRLCKLKKI 119
           TF    N   ++++ + LC+T  ++D           KGF P    Y TLI        +
Sbjct: 708 TFLLPNNIVYNIAI-AGLCKT-GKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNV 765

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           DEA R+ D M   G   + +T++ +++ L + + ++ A  L   + +  + P++  YN L
Sbjct: 766 DEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTL 825

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +  YC  GN+ A   +  KM EE +     TY AL+ G C+ G +E +  LL +M+  G 
Sbjct: 826 IDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885

Query: 240 SVLYSTYAHVMGALLRLG 257
                 Y  ++   +R G
Sbjct: 886 DSKLIEYCTLVQGYIRSG 903



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 7/193 (3%)

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L + C+T        P    Y+  I  LCK  K+D+A R   +++  GF     T+  ++
Sbjct: 702 LDESCKTFL-----LPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLI 756

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
              +    ++EA+ L + M    + P++  YN L+   C   N+     +  K+ ++ L 
Sbjct: 757 HGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLF 816

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  TY+ L+ G C+ G ++ AF L  +M+++G S    TY+ ++  L + G   +++K 
Sbjct: 817 PNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKL 876

Query: 266 V--MVCGGRDIKL 276
           +  M+  G D KL
Sbjct: 877 LNQMIKAGVDSKL 889



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 2/213 (0%)

Query: 97  DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAE-GGFGLSAITFHPILSVLTRGKRM 154
           +KG  R    Y  LI   CK  K+DEA +V+  M E          +  ++    R  ++
Sbjct: 289 EKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKI 348

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M  + +  +L   N L+  YC +G +    GV+ +M +  L  D+ +Y+ L
Sbjct: 349 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 408

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G CR G   EAF L  +M+ +G      TY  ++  L R+G +  A++   +   R +
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGV 468

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             D   + +L   L  +E F  A+ + K++  R
Sbjct: 469 APDEVGYSTLLDGLFKMENFEGASTLWKDILAR 501



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 114/276 (41%), Gaps = 3/276 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           EP    Y  L+N      D+E  + +L   +         T+  +      +  +     
Sbjct: 258 EPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEK 317

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + R +       P + AY  LI   C+  KID+A+R++D M   G   +    + +++  
Sbjct: 318 VLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGY 377

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +   + EA G++  M +  + PD  +YN LL  YC +G+ +    +  KM +E +    
Sbjct: 378 CKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTV 437

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+ L+ G CR G  ++A  +   M+  G +     Y+ ++  L ++  +  A      
Sbjct: 438 LTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKD 497

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              R        F ++ S L  + +  EA  I  +M
Sbjct: 498 ILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM 533



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 124/285 (43%), Gaps = 22/285 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P S  Y+ L++    E        L +K  ++    T  T+N         ++L  LCR
Sbjct: 399 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYN---------TLLKGLCR 449

Query: 92  TLA----------RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAI 139
             A           + +G  P +  Y TL+  L K++  + A  +  DI+A G F  S I
Sbjct: 450 VGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARG-FTKSRI 508

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF+ ++S L +  +M EA  + + MK++  SPD   Y  L+  YC   N+     V   M
Sbjct: 509 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 568

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           E E +      Y++L+ G  ++ R+ E   LL  M   G +    TY  ++    + G  
Sbjct: 569 EREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 628

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +A           +  +  +  ++ S L  L R +EAN ++++M
Sbjct: 629 DKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 673



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+   C+     EA  + D M + G   + +T++ +L  L R    ++A  +
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 459

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M +  V+PD   Y+ LL       N    S + K +          T++ ++ G C+
Sbjct: 460 WHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCK 519

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ EA  +  +M D G S    TY  ++    +     QA K         I    E+
Sbjct: 520 MGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEM 579

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + SL S L    R  E   +L EM  R L
Sbjct: 580 YNSLISGLFKSRRLVEVTDLLTEMGIRGL 608



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK   + +A +V   M       S   ++ ++S L + +R+ E   L
Sbjct: 540 PDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDL 599

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    ++P++  Y  L+  +C +G L        +M E  L A+      +V G  R
Sbjct: 600 LTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYR 659

Query: 221 AGRVEEAFVLLRRMVDDG 238
            GR++EA +L+++MVD G
Sbjct: 660 LGRIDEANLLMQKMVDHG 677



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 6/189 (3%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           T+N+L V  ++ +   R+    P   + ++L+  L K  +   A  V   M   G     
Sbjct: 172 TKNALYVFDNMGKC-GRI----PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDV 226

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
                +++   +  +++EA G ++ M+ + V P++  Y+ L+  Y   G++ A  GVLK 
Sbjct: 227 FMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKF 286

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLG 257
           M E+ +  +  TY  L+ G C+  +++EA  +LR M ++   V     Y  ++    R G
Sbjct: 287 MSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTG 346

Query: 258 YYAQAVKFV 266
               AV+ +
Sbjct: 347 KIDDAVRLL 355



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK + +D A R+   + + G   + +T++ ++    +   M+ A+ L
Sbjct: 782 PNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 841

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  +SP +  Y+ L+   C  G++  +  +L +M +  + +    Y  LV G  R
Sbjct: 842 KDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIR 901

Query: 221 AGRVEEAFVLLRRM 234
           +G +++   L   M
Sbjct: 902 SGEMQKIHKLYDMM 915



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 51/117 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK+  +D A ++ D M E G   S +T+  +++ L +   +E +  
Sbjct: 816 FPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMK 875

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           L+  M +  V   L  Y  L+  Y   G +     +   M    L   A ++  + L
Sbjct: 876 LLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIRCLSTTAISHKQVDL 932



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 6/189 (3%)

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL--RVVDI 128
           F F++  +N    +   C+ +  L +G  +    AY   +  LCK K     +   +V +
Sbjct: 89  FQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGV 148

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
             E  F  S   F  IL V       + A  + + M +    P L + N LL      G 
Sbjct: 149 YRE--FAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGE 206

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                 V ++M    +  D      +V   C+ G+V+EA   +++M + G      TY  
Sbjct: 207 THTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHS 266

Query: 249 VMGALLRLG 257
           ++   + LG
Sbjct: 267 LINGYVSLG 275


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 126/300 (42%), Gaps = 38/300 (12%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           L+ +++ + RS    G  PD  T   YD L+N            + + KR+R        
Sbjct: 256 LLDEAIELKRSMVDKGLVPDLYT---YDILING-----------FCMEKRSR-------- 293

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
                   E  L +L         +D G  P    Y+ LI    +   I++A R+ D M 
Sbjct: 294 --------EAKLMLLE-------MIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMV 338

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   + I ++ +L+ + +  +ME+A  +M+ M E  V PD   Y+ L+  +C   N+ 
Sbjct: 339 ACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMA 398

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               +L +M++ KL     TY  ++ G CR G ++    +LR MV +G       Y  +M
Sbjct: 399 RAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLM 458

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            A  + G   ++   +     + I  D   + SL       +R  EA   L EM +R L+
Sbjct: 459 TAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLR 518



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 117/256 (45%), Gaps = 24/256 (9%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
            I N+++ L+VL  + +   R   G P    +D L+    K+  + EA+ V        F
Sbjct: 127 IIRNSDSPLAVLGSIVKCY-RSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEF 185

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
             S ++ + +L  L +G ++E  W + + M   +V PD+  Y  +++A+C  GN+     
Sbjct: 186 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 245

Query: 195 VLKKMEEEK-----------------LGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
           VL +M E+                  L  D  TYD L+ G C   R  EA ++L  M+D 
Sbjct: 246 VLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV 305

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKF---VMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           G      TY  ++   +R G   QA +    ++ CG   I+ +  ++ +L + +    + 
Sbjct: 306 GLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACG---IEANLIIWNTLLNGVCKAGKM 362

Query: 295 NEANFILKEMNKRDLK 310
            +A  I++EM ++ ++
Sbjct: 363 EKALEIMQEMMEKGVE 378



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 4/214 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  LI   CK   + EA  V   +          T+  ++  L+R  +M EA+G
Sbjct: 553 LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 612

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +   ++E  + P+   YN L++  C +GN+   S +L++M  + +  D  TY+ L+ G C
Sbjct: 613 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLC 672

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +AG +E A  L   +   G +    TYA ++    +      A + +     R +  D  
Sbjct: 673 KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAF 732

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           ++  + +     E+F +A  + +EM    L+ GF
Sbjct: 733 IYNVILNFCCKEEKFEKALDLFQEM----LEKGF 762



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L+KGF    +++TLI   CK  K+ EA  +++ M E  F  + +T+  ++    +   M 
Sbjct: 758 LEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMG 817

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L   M+E  V P    Y  LL  Y   GN++  S + ++M  + +  D  TY  ++
Sbjct: 818 EAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 877

Query: 216 LGACRAGRVEEA 227
              CR G V EA
Sbjct: 878 DAYCREGNVMEA 889



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 1/165 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++   CK +K ++AL +   M E GF  S ++F+ ++    +  +++EA  L
Sbjct: 729 PDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGKLQEANHL 787

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M E +  P+   Y  L+   C  G +     +  +M+E  +   A+TY +L+ G   
Sbjct: 788 LEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHN 847

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G + E   L   MV  G      TY  ++ A  R G   +A K 
Sbjct: 848 IGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKL 892



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 5/228 (2%)

Query: 87  SDLCRTLARLDKGFPRKSA-----YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            ++ R    LD+   RK A     Y  +I  LC+   +     ++  M   G   +A+ +
Sbjct: 395 QNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVY 454

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             +++   +  R+EE+  ++E M+E  + PD+  YN L+  +C    +      L +M E
Sbjct: 455 TTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE 514

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
            +L  +A TY A + G  +AG +E A      M+  G       Y  ++    + G   +
Sbjct: 515 RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE 574

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           A         R +  D + +  L   L    + +EA  I  E+ ++ L
Sbjct: 575 AFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGL 622



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 102/228 (44%), Gaps = 8/228 (3%)

Query: 78  NTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           N + +  +L ++C       KG  P    Y+ LI  LCK  +I+ A  + D +   G   
Sbjct: 641 NVDKASQLLEEMCI------KGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 694

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           + +T+  ++    + K    A+ L+E M    V PD   YN +L   C +        + 
Sbjct: 695 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLF 754

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           ++M E+   A   +++ L+ G C++G+++EA  LL  M++      + TY  ++    + 
Sbjct: 755 QEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKA 813

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           G   +A +  +    R++    + + SL      +   +E + + +EM
Sbjct: 814 GMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 861



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y++LI   CK K+++EA   +  M E     +A T+   +   ++   ME A  
Sbjct: 483 LPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADR 542

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M    V P++  Y  L+  +C +GN+T    V + +   ++  D +TY  L+ G  
Sbjct: 543 YFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLS 602

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           R G++ EAF +   + + G      TY  ++    + G   +A + +
Sbjct: 603 RNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLL 649



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 18/212 (8%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    Y  +I   CK+  + +A RV+  M E                  + + ++EA
Sbjct: 219 KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGE------------------KARLLDEA 260

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L   M +  + PDL  Y+ L+  +C +        +L +M +  L  +  TY+AL+ G
Sbjct: 261 IELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDG 320

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             R G +E+AF +   MV  G       +  ++  + + G   +A++ +     + ++ D
Sbjct: 321 FMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPD 380

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           ++ +  L       +    A  +L EM KR L
Sbjct: 381 SQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 412



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 89/196 (45%)

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           K + +DEA+ +   M + G      T+  +++     KR  EA  ++  M ++ + P+  
Sbjct: 253 KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPI 312

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            YN L+  +  +G++     +  +M    + A+   ++ L+ G C+AG++E+A  +++ M
Sbjct: 313 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 372

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           ++ G      TY+ ++    R    A+A + +     R +      +  + + L      
Sbjct: 373 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNL 432

Query: 295 NEANFILKEMNKRDLK 310
              N IL+EM    LK
Sbjct: 433 QGTNAILREMVMNGLK 448


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    + T++  LCK   I  A  VVD+M + G     +T+  ++        M+EA
Sbjct: 317 KIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEA 376

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + + M      P++ +YN L+  YC    +    G+L++M  + L AD  TY+ L+ G
Sbjct: 377 VKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHG 436

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR++ A  L   MV  GQ     TY  ++  L +  + A+A+  +    G ++  D
Sbjct: 437 LCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDAD 496

Query: 278 TELF 281
             ++
Sbjct: 497 ILVY 500



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 121/291 (41%), Gaps = 8/291 (2%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           T+  +F   P     + L+N+  H R L     +L K  +  C     TFN +      L
Sbjct: 136 TQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIR---GL 192

Query: 84  SVLSDLCRTLARLDK----GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
            V   +   L   DK    GF P    Y TL+  LCK+     A+R++  M +     + 
Sbjct: 193 CVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNV 252

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           I ++ I+  L + +++ EA+ L   M    +SPD+  YN L+ A C        + +L +
Sbjct: 253 IAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNE 312

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M   K+  +   +  +V   C+ G +  A  ++  M+  G      TY  +M        
Sbjct: 313 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE 372

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             +AVK       +    +   +  L +    ++R ++A  +L++M+ + L
Sbjct: 373 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL 423



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 63/127 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI   C+++++D+A+ +++ M+  G     +T++ ++  L    R++ A  L
Sbjct: 390 PNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIAL 449

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PDL  Y  LL   C   +L     +LK +E   L AD   Y+  + G CR
Sbjct: 450 FHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCR 509

Query: 221 AGRVEEA 227
           AG +E A
Sbjct: 510 AGELEAA 516



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 10/219 (4%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           L +   TK G  PD  T   Y+ L++A  +  + + V  LLN+            F+ + 
Sbjct: 274 LFSEMITK-GISPDIFT---YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVV 329

Query: 78  NT---ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           +    E  +++  D+   + +  +G  P    Y  L+   C   ++DEA++V D M   G
Sbjct: 330 DALCKEGMIAIAHDVVDMMIK--RGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 387

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
              +  +++ +++   + +RM++A GL+E M    +  D   YN L+   C  G L    
Sbjct: 388 CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAI 447

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
            +  +M       D  TY  L+   C+   + EA VLL+
Sbjct: 448 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLK 486



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 79/186 (42%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+AL   + M       S + F  +L+ + + K       L   M    + PD+   N 
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 152

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+ ++C    L     VL K+ +     D  T++ L+ G C  G++ EA  L  + + +G
Sbjct: 153 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 212

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
                 TY  +M  L ++G  + A++ +     ++ + +   + ++   L    +  EA 
Sbjct: 213 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 272

Query: 299 FILKEM 304
            +  EM
Sbjct: 273 NLFSEM 278



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 2/223 (0%)

Query: 84  SVLSDLCRTLARLDKGFPRKSAYD--TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           + L D   +  R+    P  S  D   L+  + K+K     L +   M   G      T 
Sbjct: 91  NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 150

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + +++     +R+  A+ ++  + ++   PD T +N L+   C +G +     +  K   
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 210

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           E    D  TY  L+ G C+ G    A  LLR MV          Y  ++ +L +     +
Sbjct: 211 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 270

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           A         + I  D   + SL   L  L  +     +L EM
Sbjct: 271 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM 313



 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 32/177 (18%), Positives = 69/177 (38%), Gaps = 2/177 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y  L++      +++    + +      C     ++N + N    +  +     
Sbjct: 354 EPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMG 413

Query: 92  TLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L ++  +G    +  Y+TLI  LC + ++  A+ +   M   G     +T+  +L  L 
Sbjct: 414 LLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLC 473

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           +   + EA  L++ ++   +  D+  YN  +   C  G L A   +   +  +   A
Sbjct: 474 KNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQGFAA 530


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+DEA  + + M + G   + +T
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++ V  +   ++ A  + + M     SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRAD 363

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K         +K D   +  + ++         A+ +LKEM +
Sbjct: 364 DAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQR 409



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    +L  +DE  R+   M   G      T+  +++ L +  +++EA  L
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P+   +  L+  +C  G + +   + K+M  +    D  TY+ L+ G C+
Sbjct: 229 FNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++   L+  M  +G      TY  ++    + G    A +F        I+LD   
Sbjct: 289 KGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R ++A  + +EM    LK
Sbjct: 349 YTALVSGLCQEGRADDAEKMFREMLSVGLK 378



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 5/216 (2%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           SG  PD  T   Y  L+N    E  ++    L N+           TF  + +      +
Sbjct: 200 SGVQPDVYT---YSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGM 256

Query: 86  LSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           +        + L +GF P    Y+TLI  LCK   + +   ++D M+  G     IT+  
Sbjct: 257 VDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTT 316

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   +E A+   + M +  +  D  AY  L++  C +G       + ++M    
Sbjct: 317 LIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVG 376

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           L  D  TY  ++   C+ G V  A  LL+ M  DG 
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGH 412



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K       +DT   ++  L KLK           + E G+  S   F+ ++    + 
Sbjct: 90  RLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             M  A  + + + +  + P + ++N L+  Y   G+L     +   M    +  D  TY
Sbjct: 150 GEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  +V+EA  L   M+D G
Sbjct: 210 SVLINGLCKESKVDEANELFNEMLDRG 236


>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
 gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
 gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
 gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 463

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 10/203 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAW 158
           P    Y+ L+  LCK K +      VD M +  F +    ++F  ++  +   K + EA 
Sbjct: 192 PDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDD-FDVKPDLVSFTILIDNVCNSKNLREAM 250

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  +      PD   YN ++  +C     +   GV KKM+EE +  D  TY+ L+ G 
Sbjct: 251 YLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGL 310

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-----CGGRD 273
            +AGRVEEA + L+ MVD G     +TY  +M  + R G    A+  +       C   D
Sbjct: 311 SKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPND 370

Query: 274 IKLDTELFGSLGSKLI--GLERF 294
              +T L G   ++L+  G+E +
Sbjct: 371 CTYNTLLHGLCKARLMDKGMELY 393



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T++   C L K  EA+ V   M E G     IT++ ++  L++  R+EEA   ++ M 
Sbjct: 268 YNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMV 327

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +    PD   Y  L+   C KG       +L++ME      +  TY+ L+ G C+A  ++
Sbjct: 328 DAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMD 387

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +   L   M   G  +  + YA ++ +L++ G  A+A +            D   + +L 
Sbjct: 388 KGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYSTLE 447

Query: 286 SKLIGLERFNEANFI 300
           + L  L++  E   +
Sbjct: 448 TTLKWLKKAKEQGLV 462



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 7/238 (2%)

Query: 74  NFITNTENSLSVLSDLCRTLARLDKGFPR----KSAYDTLIGRLCKLK--KIDEALRVVD 127
           N +  +  S++V++D  +    + K  P     +S +  L+   C+     I    RV++
Sbjct: 89  NSVLQSYGSIAVVNDTVKLFQHILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLN 148

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           +M   G     +T    +  L    R++EA  LM+ + E    PD   YN+LL   C   
Sbjct: 149 LMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCK 208

Query: 188 NLTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +L      + +M ++  +  D  ++  L+   C +  + EA  L+ ++ + G       Y
Sbjct: 209 DLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLY 268

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +M     L   ++AV          ++ D   + +L   L    R  EA   LK M
Sbjct: 269 NTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTM 326



 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 17/137 (12%)

Query: 45  AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS 104
           AG+E D  T   L+N   R                  SL  LS L    AR     P   
Sbjct: 329 AGYEPDTATYTSLMNGMCR---------------KGESLGALSLLEEMEAR--GCAPNDC 371

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TL+  LCK + +D+ + + ++M   G  L +  +  ++  L +  ++ EA+ + +  
Sbjct: 372 TYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYA 431

Query: 165 KEIRVSPDLTAYNYLLT 181
            + +   D +AY+ L T
Sbjct: 432 VDSKSLSDASAYSTLET 448


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 126/300 (42%), Gaps = 38/300 (12%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           L+ +++ + RS    G  PD  T   YD L+N            + + KR+R        
Sbjct: 265 LLDEAIELKRSMVDKGLVPDLYT---YDILING-----------FCMEKRSR-------- 302

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
                   E  L +L         +D G  P    Y+ LI    +   I++A R+ D M 
Sbjct: 303 --------EAKLMLLE-------MIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMV 347

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   + I ++ +L+ + +  +ME+A  +M+ M E  V PD   Y+ L+  +C   N+ 
Sbjct: 348 ACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMA 407

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               +L +M++ KL     TY  ++ G CR G ++    +LR MV +G       Y  +M
Sbjct: 408 RAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLM 467

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            A  + G   ++   +     + I  D   + SL       +R  EA   L EM +R L+
Sbjct: 468 TAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLR 527



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    Y  +I   CK+  + +A RV+  M E G   + +T++ I+  L R + ++EA
Sbjct: 210 KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEA 269

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L   M +  + PDL  Y+ L+  +C +        +L +M +  L  +  TY+AL+ G
Sbjct: 270 IELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDG 329

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             R G +E+AF +   MV  G       +  ++  + + G   +A++ +     + ++ D
Sbjct: 330 FMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPD 389

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           ++ +  L       +    A  +L EM KR L
Sbjct: 390 SQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 421



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 34/295 (11%)

Query: 33  PTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           P    Y ++++A    G+ +D +  R LL    + C  N   T+N I         +  L
Sbjct: 213 PDVYTYTNMISAHCKVGNVKDAK--RVLLEMGEKGCSPNLV-TYNVI---------IGGL 260

Query: 90  CRTLARL------------DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           CR  ARL            DKG  P    YD LI   C  K+  EA  ++  M + G   
Sbjct: 261 CR--ARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKP 318

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             IT++ ++    R   +E+A+ + + M    +  +L  +N LL   C  G +     ++
Sbjct: 319 EPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIM 378

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           ++M E+ +  D++TY  L+ G CR   +  AF LL  M     +    TY+ ++  L R 
Sbjct: 379 QEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRC 438

Query: 257 GYY--AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           G      A+   MV  G  +K +  ++ +L +      R  E+  IL+ M ++ +
Sbjct: 439 GNLQGTNAILREMVMNG--LKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGI 491



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 1/164 (0%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
            I N+++ L+VL  + +   R   G P    +D L+    K+  + EA+ V        F
Sbjct: 118 IIRNSDSPLAVLGSIVKCY-RSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEF 176

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
             S ++ + +L  L +G ++E  W + + M   +V PD+  Y  +++A+C  GN+     
Sbjct: 177 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 236

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           VL +M E+    +  TY+ ++ G CRA  ++EA  L R MVD G
Sbjct: 237 VLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKG 280



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 4/213 (1%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L+KGF    +++TLI   CK  K+ EA  +++ M E  F  + +T+  ++    +   M 
Sbjct: 767 LEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMG 826

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L   M+E  V P    Y  LL  Y   GN++  S + ++M  + +  D  TY  ++
Sbjct: 827 EAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 886

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG--GRD 273
              CR G V EA  L   ++  G  +  + Y  ++ AL +   + + +K +   G  G  
Sbjct: 887 DAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFR 946

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           + L T    + G ++ G    +EA  +L+ M K
Sbjct: 947 LGLPTCSVIARGFQIAG--NMDEAAEVLRSMVK 977



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 1/213 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++   CK +K ++AL +   M E GF  S ++F+ ++    +  +++EA  L
Sbjct: 738 PDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGKLQEANHL 796

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M E +  P+   Y  L+   C  G +     +  +M+E  +   A+TY +L+ G   
Sbjct: 797 LEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHN 856

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + E   L   MV  G      TY  ++ A  R G   +A K       + + +    
Sbjct: 857 IGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAA 916

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           + +L   L   E F E   +L E+ +   ++G 
Sbjct: 917 YDALIQALCKKEEFFEVLKLLNEIGESGFRLGL 949



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 4/214 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  LI   CK   + EA  V   +          T+  ++  L+R  +M EA+G
Sbjct: 562 LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 621

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +   ++E  + P+   YN L++  C +GN+   S +L++M  + +  D  TY+ L+ G C
Sbjct: 622 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLC 681

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +AG +E A  L   +   G +    TYA ++    +      A + +     R +  D  
Sbjct: 682 KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAF 741

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           ++  + +     E+F +A  + +EM    L+ GF
Sbjct: 742 IYNVILNFCCKEEKFEKALDLFQEM----LEKGF 771



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 5/228 (2%)

Query: 87  SDLCRTLARLDKGFPRKSA-----YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            ++ R    LD+   RK A     Y  +I  LC+   +     ++  M   G   +A+ +
Sbjct: 404 QNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVY 463

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             +++   +  R+EE+  ++E M+E  + PD+  YN L+  +C    +      L +M E
Sbjct: 464 TTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE 523

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
            +L  +A TY A + G  +AG +E A      M+  G       Y  ++    + G   +
Sbjct: 524 RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE 583

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           A         R +  D + +  L   L    + +EA  I  E+ ++ L
Sbjct: 584 AFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGL 631



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y++LI   CK K+++EA   +  M E     +A T+   +   ++   ME A  
Sbjct: 492 LPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADR 551

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M    V P++  Y  L+  +C +GN+T    V + +   ++  D +TY  L+ G  
Sbjct: 552 YFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLS 611

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           R G++ EAF +   + + G      TY  ++    + G   +A + +
Sbjct: 612 RNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLL 658



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 9/109 (8%)

Query: 96   LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG--- 151
            L KG P   +AYD LI  LCK ++  E L++++ + E GF L      P  SV+ RG   
Sbjct: 906  LVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGL----PTCSVIARGFQI 961

Query: 152  -KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
               M+EA  ++  M +     + T+   L+       N   +  +LK+M
Sbjct: 962  AGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 1010


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    + T++  LCK   I  A  VVD+M + G     +T+  ++        M+EA
Sbjct: 355 KIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEA 414

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + + M      P++ +YN L+  YC    +    G+L++M  + L AD  TY+ L+ G
Sbjct: 415 VKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHG 474

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR++ A  L   MV  GQ     TY  ++  L +  + A+A+  +    G ++  D
Sbjct: 475 LCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDAD 534

Query: 278 TELF 281
             ++
Sbjct: 535 ILVY 538



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 2/226 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y  L++      +++    + +      C     ++N + N    +  +     
Sbjct: 392 EPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMG 451

Query: 92  TLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L ++  +G    +  Y+TLI  LC + ++  A+ +   M   G     +T+  +L  L 
Sbjct: 452 LLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLC 511

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   + EA  L++ ++   +  D+  YN  +   C  G L A   +   +  + L  D R
Sbjct: 512 KNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVR 571

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           TY+ ++ G C+ G ++EA  L R+M ++G S     Y  ++   LR
Sbjct: 572 TYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLR 617



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI   C+++++D+A+ +++ M+  G     +T++ ++  L    R++ A  L
Sbjct: 428 PNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIAL 487

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PDL  Y  LL   C   +L     +LK +E   L AD   Y+  + G CR
Sbjct: 488 FHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCR 547

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           AG +E A  L   +   G      TY  ++  L + G   +A K 
Sbjct: 548 AGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKL 592



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 121/291 (41%), Gaps = 8/291 (2%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           T+  +F   P     + L+N+  H R L     +L K  +  C     TFN +      L
Sbjct: 174 TQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIR---GL 230

Query: 84  SVLSDLCRTLARLDK----GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
            V   +   L   DK    GF P    Y TL+  LCK+     A+R++  M +     + 
Sbjct: 231 CVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNV 290

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           I ++ I+  L + +++ EA+ L   M    +SPD+  YN L+ A C        + +L +
Sbjct: 291 IAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNE 350

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M   K+  +   +  +V   C+ G +  A  ++  M+  G      TY  +M        
Sbjct: 351 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE 410

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             +AVK       +    +   +  L +    ++R ++A  +L++M+ + L
Sbjct: 411 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL 461



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 121/293 (41%), Gaps = 10/293 (3%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           L +   TK G  PD  T   Y+ L++A  +  + + V  LLN+            F+ + 
Sbjct: 312 LFSEMITK-GISPDIFT---YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVV 367

Query: 78  NT---ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           +    E  +++  D+   + +  +G  P    Y  L+   C   ++DEA++V D M   G
Sbjct: 368 DALCKEGMIAIAHDVVDMMIK--RGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 425

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
              +  +++ +++   + +RM++A GL+E M    +  D   YN L+   C  G L    
Sbjct: 426 CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAI 485

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            +  +M       D  TY  L+   C+   + EA VLL+ +           Y   +  +
Sbjct: 486 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGM 545

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            R G    A         + ++ D   +  +   L      +EAN + ++M++
Sbjct: 546 CRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDE 598



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 79/186 (42%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+AL   + M       S + F  +L+ + + K       L   M    + PD+   N 
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 190

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+ ++C    L     VL K+ +     D  T++ L+ G C  G++ EA  L  + + +G
Sbjct: 191 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 250

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
                 TY  +M  L ++G  + A++ +     ++ + +   + ++   L    +  EA 
Sbjct: 251 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 310

Query: 299 FILKEM 304
            +  EM
Sbjct: 311 NLFSEM 316



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 2/223 (0%)

Query: 84  SVLSDLCRTLARLDKGFPRKSAYD--TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           + L D   +  R+    P  S  D   L+  + K+K     L +   M   G      T 
Sbjct: 129 NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 188

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + +++     +R+  A+ ++  + ++   PD T +N L+   C +G +     +  K   
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 248

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           E    D  TY  L+ G C+ G    A  LLR MV          Y  ++ +L +     +
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 308

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           A         + I  D   + SL   L  L  +     +L EM
Sbjct: 309 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM 351



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 63/146 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  L+  LCK   + EA+ ++  +         + ++  +  + R   +E A  
Sbjct: 497 IPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARD 556

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   +    + PD+  YN ++   C +G L   + + +KM+E     D   Y+ ++ G  
Sbjct: 557 LFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFL 616

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYST 245
           R+     A  LL+ M+ +G S   ST
Sbjct: 617 RSNETFGATQLLQEMLAEGFSADVST 642


>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g13040, mitochondrial; Flags: Precursor
 gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
 gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 77/158 (48%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +GF    +Y TLI   C+     +A R+ + M + G  ++ +T+  ++    R      A
Sbjct: 320 RGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVA 379

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L++ M E+ +SPD   Y  +L   C  GN+    GV   M E ++  DA +Y++L+ G
Sbjct: 380 KKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISG 439

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            CR+GRV EA  L   M          T+  ++G L+R
Sbjct: 440 LCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIR 477



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 123/281 (43%), Gaps = 24/281 (8%)

Query: 46  GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSA 105
           G E DL T   LLN    +         N +   E    V++++ R+  +LD       +
Sbjct: 250 GCEPDLVTYNVLLNYYYDN---------NMLKRAEG---VMAEMVRSGIQLDA-----YS 292

Query: 106 YDTLIGRLCKLKKIDEALR-VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           Y+ L+ R C++   D+    +V  M   GF    +++  ++    R     +A+ L E M
Sbjct: 293 YNQLLKRHCRVSHPDKCYNFMVKEMEPRGF-CDVVSYSTLIETFCRASNTRKAYRLFEEM 351

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++  +  ++  Y  L+ A+  +GN +    +L +M E  L  D   Y  ++   C++G V
Sbjct: 352 RQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNV 411

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++A+ +   M++   +    +Y  ++  L R G   +A+K      G++   D   F  +
Sbjct: 412 DKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFI 471

Query: 285 GSKLIGLERFNEANFILKEMNKRDLKMGFKL-RDYYEINVK 324
              LI  ++ + A  +  +M    +  GF L RD  +  +K
Sbjct: 472 IGGLIRGKKLSAAYKVWDQM----MDKGFTLDRDVSDTLIK 508



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 1/129 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P   A   L+  LC  +K+D A  +V + +      LS + ++ ++S   +  R+E+A  
Sbjct: 182 PDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEA 241

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M +I   PDL  YN LL  Y     L    GV+ +M    +  DA +Y+ L+   C
Sbjct: 242 LKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHC 301

Query: 220 RAGRVEEAF 228
           R    ++ +
Sbjct: 302 RVSHPDKCY 310



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 71/161 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI   CK  +I++A  +   M++ G     +T++ +L+       ++ A G+M  M 
Sbjct: 223 YNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMV 282

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +  D  +YN LL  +C   +       + K  E +   D  +Y  L+   CRA    
Sbjct: 283 RSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTR 342

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A+ L   M   G  +   TY  ++ A LR G  + A K +
Sbjct: 343 KAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLL 383



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y T++  LCK   +D+A  V + M E      AI+++ ++S L R  R+ EA  L
Sbjct: 393 PDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKL 452

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            E MK     PD   + +++        L+A   V  +M ++    D    D L+  +C
Sbjct: 453 FEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKASC 511



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 58/135 (42%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+  IG L +  + + A  +   M   GF L   T+   +S L + K+ +    L+  M+
Sbjct: 47  YNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDME 106

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            +   PD+ A+N  L   C +  +         M +     D  +Y  L+ G  RAG+V 
Sbjct: 107 TLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVT 166

Query: 226 EAFVLLRRMVDDGQS 240
           +A  +   M+  G S
Sbjct: 167 DAVEIWNAMIRSGVS 181



 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y   I  LCK+KK D    ++  M   GF      F+  L +L R  ++  A      M 
Sbjct: 82  YSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMV 141

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +    PD+ +Y  L+      G +T    +   M    +  D +   ALV+G C A +V+
Sbjct: 142 QRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVD 201

Query: 226 EAFVLL 231
            A+ ++
Sbjct: 202 LAYEMV 207


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 1/211 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P   +Y TLI   CK+ KID+A+ + + M    +     T++ ++  L    R+++
Sbjct: 330 KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQD 389

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L   M      PDL  Y+ LL + C   +L     +LK +E   L  D + Y+ ++ 
Sbjct: 390 AIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIID 449

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G CRAG +E A  L   +   G      TY  ++  L + G   +A K  M   G D   
Sbjct: 450 GMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSP 509

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           D   + ++    +       A  +L+EM  R
Sbjct: 510 DGCTYNTIARGFLQNNETLRAIQLLEEMLAR 540



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 89/184 (48%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    + T++  LCK  K+ EA  +VD+M + G     +T+  ++        M+EA
Sbjct: 261 KILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEA 320

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + ++M     +PD+ +Y  L+  YC    +     + ++M  ++   D +TY+ L+ G
Sbjct: 321 VKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHG 380

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR+++A  L   MV  GQ     TY+ ++ +L +  +  +A+  +      ++  D
Sbjct: 381 LCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPD 440

Query: 278 TELF 281
            +++
Sbjct: 441 IQVY 444



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 1/214 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+GF P    Y TLI  LCK+     A+R++  M +G      + +  I+  L + +++
Sbjct: 153 IDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQV 212

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+ L   M    +SPD+  Y  L+ A C        + +L +M   K+  D   +  +
Sbjct: 213 TEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTV 272

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           V   C+ G+V EA  ++  M+  G      TY  +M          +AVK   +   +  
Sbjct: 273 VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF 332

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
             D   + +L +    + + ++A ++ +EM +++
Sbjct: 333 APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKE 366



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 89/210 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI   C L ++  A  V+  + + G      TF  ++  L    ++ EA  L
Sbjct: 89  PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHL 148

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +    P++  Y  L+   C  GN +A   +L+ ME+     D   Y +++   C+
Sbjct: 149 FDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCK 208

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +V EAF L  +MV  G S    TY  ++ AL  L  +      +       I  D  +
Sbjct: 209 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 268

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F ++   L    +  EA+ I+  M +R ++
Sbjct: 269 FSTVVDALCKEGKVTEAHEIVDMMIQRGVE 298



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 84/201 (41%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S+ +    +      +D+AL   + +       S + F  +L+ + + K       L   
Sbjct: 22  SSQNNFHSKSLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQ 81

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    V P++   N L+ ++C    +     VL K+ +     D  T+  L+ G C  G+
Sbjct: 82  MDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGK 141

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           + EA  L  +M+D+G      TY  ++  L ++G  + A++ +      + + D  ++ S
Sbjct: 142 IGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTS 201

Query: 284 LGSKLIGLERFNEANFILKEM 304
           +   L    +  EA  +  +M
Sbjct: 202 IIDSLCKDRQVTEAFNLFSQM 222



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 3/240 (1%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYD--TLIGRLCKLKKIDEALR 124
           F +++  NF + + +  + L D   +  RL    P  S  D   L+  + K+K     L 
Sbjct: 19  FFSSSQNNFHSKSLH-FNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLS 77

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +   M   G   +  T + +++      R+  A+ ++  + ++   PD T +  L+   C
Sbjct: 78  LSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLC 137

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            +G +     +  KM +E    +  TY  L+ G C+ G    A  LLR M          
Sbjct: 138 VEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVV 197

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            Y  ++ +L +     +A        G+ I  D   + SL   L  L  +     +L +M
Sbjct: 198 IYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQM 257



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 2/215 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+N       ++   YL  +  R        T+N + +    +  L D    
Sbjct: 334 PDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIAL 393

Query: 93  LARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              +  +G  P    Y  L+  LCK   ++EA+ ++  +           ++ I+  + R
Sbjct: 394 FHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCR 453

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              +E A  L   +    + P +  YN ++   C +G L   + +  +M+      D  T
Sbjct: 454 AGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCT 513

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           Y+ +  G  +      A  LL  M+  G S   ST
Sbjct: 514 YNTIARGFLQNNETLRAIQLLEEMLARGFSADVST 548


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P    Y +LI  LC   K D+A  ++  M + G  L+ I F+ I+    +  R+
Sbjct: 433 IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRV 492

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E+  L ++M  I V P++  Y+ L+  YC  G +   + +L  M    +  D  TY+ L
Sbjct: 493 IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G CR  R+++A  L + MV  G S    TY  ++  L  
Sbjct: 553 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 593



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 88/190 (46%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D   P    Y++L+  LCK  +  EA ++ D M + G      T+  +L        +
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGAL 352

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E   L+++M    + PD   +N L+ AY  +  +     V  KM +  L  +  TY A+
Sbjct: 353 VEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAV 412

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   C++G V++A +   +M+D+G +     Y  ++ +L     + +A + ++    R I
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472

Query: 275 KLDTELFGSL 284
            L+T  F S+
Sbjct: 473 CLNTIFFNSI 482



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 66/138 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y ++I  LCK + +D+A+ V+  M + G   + +T++ IL      ++ +EA G 
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF 288

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+   V PD+  YN L+   C  G  T    +   M +  L  D  TY  L+ G   
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G + E   LL  MV +G
Sbjct: 349 KGALVEMHALLDLMVRNG 366



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 12/216 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I    K    D+A      M +       +T+  I++ L +G+ M++A  +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V P+   YN +L  YC         G LKKM  + +  D  TY++L+   C+
Sbjct: 254 LTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCK 313

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM------GALLRLGYYAQAVKFVMVCGGRDI 274
            GR  EA  +   M   G     +TY  ++      GAL+ +     A+  +MV  G  I
Sbjct: 314 NGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEM----HALLDLMVRNG--I 367

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             D  +F  L       E+ +EA  +  +M +  L 
Sbjct: 368 HPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLN 403



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 103/238 (43%), Gaps = 13/238 (5%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           S+++ LC+  A +DK              P    Y++++   C  ++  EA+  +  M  
Sbjct: 236 SIIAALCKGQA-MDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRS 294

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T++ ++  L +  R  EA  + + M +  + PD+  Y  LL  Y  KG L  
Sbjct: 295 DGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVE 354

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +L  M    +  D   ++ L+    +  +V+EA ++  +M   G +    TY  V+G
Sbjct: 355 MHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIG 414

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            L + G    A+ +        +  +  ++ SL   L   +++++A  ++ EM  R +
Sbjct: 415 ILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 92/206 (44%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ D+M   G   + IT+  ++      
Sbjct: 465 LEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLA 524

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + + PD   YN L+  YC    +     + K+M    +  +  TY
Sbjct: 525 GKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G     R   A  L   +   G  +  STY  ++  L +     +A++       
Sbjct: 585 NIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 644

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D++L+T  F  +   L+ + R +EA
Sbjct: 645 TDLQLETRTFNIMIGALLKVGRNDEA 670



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI    K +K+DEA+ V   M + G   + +T+  ++ +L +   +++A   
Sbjct: 369 PDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLY 428

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  ++P++  Y  L+ + C          ++ +M +  +  +   +++++   C+
Sbjct: 429 FEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCK 488

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY+ ++      G   +A K +       +K D   
Sbjct: 489 EGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVT 548

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +    + R ++A  + KEM
Sbjct: 549 YNTLINGYCRVSRMDDALALFKEM 572



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 3/179 (1%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           L+  LC   +  EAL ++ +MA+   GG     +++  +++   +    ++A+     M 
Sbjct: 164 LLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + R+SPD+  Y+ ++ A C    +     VL  M +  +  +  TY++++ G C + + +
Sbjct: 224 DRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPK 283

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           EA   L++M  DG      TY  +M  L + G   +A K       R ++ D   + +L
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTL 342



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 98/249 (39%), Gaps = 39/249 (15%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL--------------- 145
           P    Y  LIG  C+  ++D     +  + + GF + AITF P+L               
Sbjct: 85  PTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 146 -----------------SVLTRG----KRMEEAWGLMEVMKEIR---VSPDLTAYNYLLT 181
                            ++L +G     R +EA  L+ +M + R    +PD+ +Y  ++ 
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVIN 204

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            +  +G+         +M + ++  D  TY +++   C+   +++A  +L  MV +G   
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMP 264

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
              TY  ++          +A+ F+       ++ D   + SL   L    R  EA  I 
Sbjct: 265 NCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIF 324

Query: 302 KEMNKRDLK 310
             M KR L+
Sbjct: 325 DSMTKRGLE 333



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 1/163 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK    DEALR+   +      L   TF+ ++  L +  R +EA  L   
Sbjct: 617 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVA 676

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
                + P+   Y  +      +G L     +   ME+     D+   + +V    + G 
Sbjct: 677 FSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGE 736

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  A   L  M+D+    L ++ A +   LL  G Y +  +F+
Sbjct: 737 ITRAGTYL-SMIDEKHFSLEASTASLFIDLLSGGKYQEYHRFL 778


>gi|147788269|emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
          Length = 472

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 112/266 (42%), Gaps = 28/266 (10%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF 100
           L +A   E  +E V+ L  K +    F    T+NFI         LS +   +  L   F
Sbjct: 178 LCSAGREEHAIELVKELSLKHSPPDSF----TYNFIIRHLCKTRALSTVYNFIDELQNSF 233

Query: 101 ---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS---VLTRGKRM 154
              P    Y  LI  +C  K + EA R+++++ E GF      ++ I+    +L +G   
Sbjct: 234 QLKPDLVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKG--- 290

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA G+ + MKE  V PDL  YN L+      G +      L  M E     DA TY +L
Sbjct: 291 SEAIGVYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSL 350

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G CR G    A  LL  M   G S    TY  ++  L +L               R +
Sbjct: 351 MNGLCREGNALGALALLEEMEAKGCSPNSCTYNTLLHGLCKL---------------RML 395

Query: 275 KLDTELFGSLGSKLIGLERFNEANFI 300
           +   EL+G + S  + LE+ + A F+
Sbjct: 396 ERGIELYGVMKSGGMKLEKASYATFV 421



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 27/230 (11%)

Query: 54  VRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC---------------RTLARL-- 96
           +R+L   RA       +  +NFI   +NS  +  DL                R   RL  
Sbjct: 210 IRHLCKTRA------LSTVYNFIDELQNSFQLKPDLVTYTILIDNVCNGKNLREATRLLE 263

Query: 97  ---DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
              + GF P    Y+T++   C L K  EA+ V   M E G     +T++ ++  L++  
Sbjct: 264 VLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGVYKKMKEEGVEPDLVTYNTLIFGLSKSG 323

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           R++EA   +++M E+   PD   Y  L+   C +GN      +L++ME +    ++ TY+
Sbjct: 324 RVKEARKFLDIMAEMGHFPDAVTYTSLMNGLCREGNALGALALLEEMEAKGCSPNSCTYN 383

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            L+ G C+   +E    L   M   G  +  ++YA  + AL + G  A+A
Sbjct: 384 TLLHGLCKLRMLERGIELYGVMKSGGMKLEKASYATFVRALCKEGRVAEA 433



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 6/171 (3%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKID--EALRVVDI 128
            +++ I+   +S+S L  + ++        P +S Y  L+ + CK    D     + +++
Sbjct: 102 QSYSSISTVNDSISFLRHMIKSQPSFS---PERSTYHILLSQSCKSPNSDLSAVHQTLNL 158

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   GF    +T    +  L    R E A  L++ +      PD   YN+++   C    
Sbjct: 159 MVTHGFPPDRVTTDIAVRSLCSAGREEHAIELVKELSLKHSPPDSFTYNFIIRHLCKTRA 218

Query: 189 LTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+     + +++   +L  D  TY  L+   C    + EA  LL  + + G
Sbjct: 219 LSTVYNFIDELQNSFQLKPDLVTYTILIDNVCNGKNLREATRLLEVLGEAG 269



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 20/159 (12%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ L+        ++  R  L+  A    F  A T+          S+++ LCR
Sbjct: 306 EPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYT---------SLMNGLCR 356

Query: 92  ------TLARLD----KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
                  LA L+    KG  P    Y+TL+  LCKL+ ++  + +  +M  GG  L   +
Sbjct: 357 EGNALGALALLEEMEAKGCSPNSCTYNTLLHGLCKLRMLERGIELYGVMKSGGMKLEKAS 416

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +   +  L +  R+ EA+   + + E +   D+TAY+ L
Sbjct: 417 YATFVRALCKEGRVAEAYEAFDYVVESKSFDDVTAYSTL 455


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           LCR L    +G  P    Y+ L+   CK      A +VV  M E G   S +T+  ++  
Sbjct: 360 LCRDLK--SRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDT 417

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             R   ME+A  L   M+E+ ++PD+  Y+ L+  +C KG +   S + K M E+K   +
Sbjct: 418 FARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPN 477

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              Y+ +VLG C+ G    A  L R M +       ++Y +++  L +
Sbjct: 478 EVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCK 525



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 38/179 (21%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TLIG LC+  K +EA  V+D M   G   + IT++ ++      +++ +A  L   +
Sbjct: 305 TYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDL 364

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE----------------------- 201
           K   +SP L  YN L++ +C KG+ +    V+K+MEE                       
Sbjct: 365 KSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNM 424

Query: 202 ----------EKLG--ADARTYDALVLGACRAGRVEEAFVLLRRMVD---DGQSVLYST 245
                     E+LG   D  TY  L+ G C  GR+ EA  L + MV+   +   V+Y+T
Sbjct: 425 EKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNT 483



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 93/211 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+ ++ +LCK  +  +A +V D M E G   + +T++ ++  L R  +  EA  
Sbjct: 265 FPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANE 324

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +M+ MK   ++P+L  YN L+  +C    L     + + ++   L     TY+ LV G C
Sbjct: 325 VMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFC 384

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G    A  +++ M + G      TY  ++    R     +A++         +  D  
Sbjct: 385 KKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVH 444

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +  L        R NEA+ + K M ++  +
Sbjct: 445 TYSVLIHGFCIKGRMNEASRLFKSMVEKKFE 475



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 136/343 (39%), Gaps = 44/343 (12%)

Query: 6   KLPTKFLIPQSVL--VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR 63
           K+ ++F    S+L  +T S T       +  S  Y+ ++NA    + L++  Y  N+   
Sbjct: 69  KIQSQFFTSSSLLHYLTESET------SKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVD 122

Query: 64  ------DCCFNTANTFNFITNT---------ENSLSVLSDL---------CRTLARLDKG 99
                   CFN   TF   +++         E+ + V+ D+         C     ++K 
Sbjct: 123 KGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKS 182

Query: 100 F------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           F            P    Y TLI   CK  +I++A  +   M + G   +  T+  ++  
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHG 242

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L +    ++ + + E M+E  V P+L  YN ++   C  G       V  +M E  +  +
Sbjct: 243 LFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCN 302

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY+ L+ G CR  +  EA  ++ +M  DG +    TY  ++     +    +A+    
Sbjct: 303 IVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCR 362

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               R +      +  L S        + A  ++KEM +R +K
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIK 405



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 67/138 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y  LI    +   +++A+++   M E G      T+  ++       RM EA  L
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRL 465

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E +  P+   YN ++  YC +G+      + ++MEE++L  +  +Y  ++   C+
Sbjct: 466 FKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCK 525

Query: 221 AGRVEEAFVLLRRMVDDG 238
             + +EA  L+ +M+D G
Sbjct: 526 ERKSKEAEGLVEKMIDSG 543



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/105 (21%), Positives = 47/105 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C   +++EA R+   M E  F  + + ++ ++    +      A  L
Sbjct: 441 PDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRL 500

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
              M+E  + P++ +Y Y++   C +       G+++KM +  +G
Sbjct: 501 FREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIG 545


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 4/202 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ +I  LC+  +   AL VV  M + G+    +T   +++   +G R+ +A  L+  M
Sbjct: 47  SYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM 106

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +E+   PD+  YN ++   C  G +     +  +ME + + ADA TY++LV G C +GR 
Sbjct: 107 EEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRW 166

Query: 225 EEAFVLLRRMV--DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
            +A  L+R MV  D   +V+  T+  V+   ++ G +++A+K       R +  D   + 
Sbjct: 167 SDAARLMRDMVMRDIVPNVI--TFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYN 224

Query: 283 SLGSKLIGLERFNEANFILKEM 304
           SL + L    R +EA  +L  M
Sbjct: 225 SLINGLCMHGRVDEAKQMLDLM 246



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 3/209 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC   ++DEA +++D+M   G     +T++ +++   + KR++E   L
Sbjct: 218 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 277

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  +  D   YN ++  Y   G   A   +  +M+      + RTY  L+ G C 
Sbjct: 278 FREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCM 334

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             RVE+A VL   M      +  +TY  V+  + ++G    A         + +K D   
Sbjct: 335 NWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVS 394

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + ++ S      ++++++ + ++M +  L
Sbjct: 395 YTTMISGFCRKRQWDKSDLLYRKMQEDGL 423



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 92/210 (43%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    +  ++ ++ K K  D  + +   M   G G    +++ +++ L R  R   A
Sbjct: 5   RPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIA 64

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++  M +    PD+   + L+  +C    +     ++ KMEE     D   Y+ ++ G
Sbjct: 65  LSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDG 124

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           +C+ G V +A  L  RM  DG      TY  ++  L   G ++ A + +     RDI  +
Sbjct: 125 SCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPN 184

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
              F ++    +   +F+EA  + +EM +R
Sbjct: 185 VITFTAVIDVFVKEGKFSEAMKLYEEMTRR 214



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 1/210 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P    Y+T+I   CK+  +++A+ + D M   G    A+T++ +++ L    R  +A
Sbjct: 110 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 169

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             LM  M    + P++  +  ++  +  +G  +    + ++M    +  D  TY++L+ G
Sbjct: 170 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 229

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GRV+EA  +L  MV  G      TY  ++    +     +  K       R +  D
Sbjct: 230 LCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 289

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
           T  + ++        R + A  I   M+ R
Sbjct: 290 TITYNTIIQGYFQAGRPDAAQEIFSRMDSR 319



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 32/171 (18%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL-------------- 145
            P    Y+TLI   CK K++DE  ++   MA+ G     IT++ I+              
Sbjct: 252 LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQE 311

Query: 146 --------------SVLTRG----KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
                         S+L  G     R+E+A  L E M++  +  D+T YN ++   C  G
Sbjct: 312 IFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIG 371

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           N+     + + +  + L  D  +Y  ++ G CR  + +++ +L R+M +DG
Sbjct: 372 NVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 422



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 75/173 (43%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S + F  +LS + + K  +    L   M+   +  DL +YN ++   C          V+
Sbjct: 9   SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVV 68

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            KM +     D  T  +L+ G C+  RV +A  L+ +M + G       Y  ++    ++
Sbjct: 69  GKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKI 128

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           G    AV+         ++ D   + SL + L    R+++A  ++++M  RD+
Sbjct: 129 GLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI 181



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 4/178 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PD  T   Y+ L+N     + ++    L  + A+        T+N I          
Sbjct: 250 GCLPDVVT---YNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRP 306

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
                  +R+D   P    Y  L+  LC   ++++AL + + M +    L   T++ ++ 
Sbjct: 307 DAAQEIFSRMDSR-PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIH 365

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
            + +   +E+AW L   +    + PD+ +Y  +++ +C K     +  + +KM+E+ L
Sbjct: 366 GMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 423


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + ++M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P    + TLI   CK  ++D A+ +  +M         IT++ ++  L +   +
Sbjct: 233 LDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDL 292

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL
Sbjct: 293 KQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTAL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 85/190 (44%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + +     S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV+ A  + + M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 20/216 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           + A+G + D+ T   L+N   ++   + AN           + N     +++   C+   
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKN-G 255

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+ 
Sbjct: 256 RVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  +  TY  ++   C+ G V     LL+ M  DG
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 3/219 (1%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
             L+ G C+  ++++A  L   M+D+G      T+  ++    + G    A++   +   
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLS 269

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +  D   + +L   L       +A  ++ EM+ + LK
Sbjct: 270 QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 121/279 (43%), Gaps = 2/279 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ L+NA  +E D++    +L+      C   A T+  +  +        ++  
Sbjct: 229 EPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEE 288

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
             A +  +K  P +  ++T++  LC+   +D A++VVD M+E G     +T+  IL  L 
Sbjct: 289 LFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLC 348

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              R+++A  L+  +K     PD  AY  +L   C          ++ +M       D  
Sbjct: 349 DVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEV 408

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           T++ ++   C+ G V+ A  ++ +M ++G +    TY  ++  L        A++ +   
Sbjct: 409 TFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNL 468

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
                K D   F +L   L  ++R+ +A  ++  M   D
Sbjct: 469 QSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSD 507



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 83/166 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++T+I  LC+   +D A++VV+ M+E G     +T++ I+  L   + +++A  L
Sbjct: 405 PDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMEL 464

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  ++     PD+  +N LL   C          ++  M       DA T++ ++   C+
Sbjct: 465 LSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQ 524

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G + +A   L+ M ++G     STY  V+ ALL+ G   +A+K +
Sbjct: 525 KGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLL 570



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 125/289 (43%), Gaps = 42/289 (14%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLL-NK 60
           +++  L  K L+ +++ V    +++G  PD  T   Y+ +++   +ER ++    LL N 
Sbjct: 412 TVIASLCQKGLVDRAIKVVEQMSENGCNPDIVT---YNSIIDGLCNERCIDDAMELLSNL 468

Query: 61  RARDC-----CFNT-----------------------------ANTFNFITNTENSLSVL 86
           ++  C      FNT                             A TFN +  +     +L
Sbjct: 469 QSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLL 528

Query: 87  SDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
                TL  + +    P +S Y+ ++  L K  K  EAL+++  M  G   L  IT++ +
Sbjct: 529 LQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDL--ITYNTV 586

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +S +T+  +MEEA  L+ VM    +SPD   Y  L    C +        +L ++++  L
Sbjct: 587 ISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGL 646

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
             DA  Y+ ++LG C+  R + A      MV  G     STY  ++ AL
Sbjct: 647 SPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEAL 695



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 100/252 (39%), Gaps = 38/252 (15%)

Query: 95  RLDKGFPRKS---AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL  G P       ++ LI  LC   ++ +AL V D M   G   S +T+  +L    + 
Sbjct: 151 RLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKA 210

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL--------------- 196
               +A  L++ M+     PD+  YN L+ A C +G++     +L               
Sbjct: 211 SGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTY 270

Query: 197 -------------KKMEE-------EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
                        K++EE        K   D  T++ +V   C+ G V+ A  ++  M +
Sbjct: 271 TPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSE 330

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G      TY+ ++  L  +G    AV+ +        K DT  + ++   L  +E++  
Sbjct: 331 HGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEH 390

Query: 297 ANFILKEMNKRD 308
           A  ++ EM   D
Sbjct: 391 AEELMAEMVCSD 402



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 90/212 (42%), Gaps = 35/212 (16%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I  LC  + ID+A+ ++  +   G     +TF+ +L  L    R E+A  L
Sbjct: 440 PDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQL 499

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-----------------K 203
           M  M      PD T +N ++T+ C KG L      LK M E                  K
Sbjct: 500 MVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLK 559

Query: 204 LG----------------ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            G                 D  TY+ ++    +AG++EEA  LLR MV +G S    TY 
Sbjct: 560 AGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYR 619

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            +   + R     +A++  M+C  +D+ L  +
Sbjct: 620 SLAYGICREDGTDRAIR--MLCRLQDMGLSPD 649



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 115/278 (41%), Gaps = 5/278 (1%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + +++ +       G  PD  T  Y   L +  G ER  + V  L  + A + C     T
Sbjct: 248 VDEALNILSDLPSHGCKPDAVT--YTPVLKSLCGSER-WKEVEELFAEMASNKCAPDEVT 304

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           FN I  +     ++    + +  + +    P    Y +++  LC + ++D+A+ ++  + 
Sbjct: 305 FNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLK 364

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G     I +  +L  L   ++ E A  LM  M      PD   +N ++ + C KG + 
Sbjct: 365 SYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVD 424

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               V+++M E     D  TY++++ G C    +++A  LL  +   G      T+  ++
Sbjct: 425 RAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLL 484

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
             L  +  +  A + ++     D   D   F ++ + L
Sbjct: 485 KGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSL 522



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 110/242 (45%), Gaps = 7/242 (2%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           PDE T   ++ +V +   +  ++    +++  +   C     T++ I +    +  + D 
Sbjct: 300 PDEVT---FNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDA 356

Query: 90  CRTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
              L+RL K +   P   AY T++  LC +++ + A  ++  M         +TF+ +++
Sbjct: 357 VELLSRL-KSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIA 415

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L +   ++ A  ++E M E   +PD+  YN ++   C +  +     +L  ++      
Sbjct: 416 SLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKP 475

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D  T++ L+ G C   R E+A  L+  M+        +T+  V+ +L + G   QA++ +
Sbjct: 476 DIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETL 535

Query: 267 MV 268
            +
Sbjct: 536 KI 537



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 86/229 (37%), Gaps = 40/229 (17%)

Query: 113 LCKLKKIDEALRVVDIMAEGG-----------------------------------FGLS 137
           L + ++ID+AL +VD +A GG                                    G S
Sbjct: 68  LIQREEIDDALALVDSIASGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFATLGAS 127

Query: 138 A--ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           A  +T++ +++   R  R+E+A  L+  M      PD   +N L+ A C +G +     V
Sbjct: 128 ATVVTYNTMVNGYCRAGRIEDARRLISGMP---FPPDTFTFNPLIRALCVRGRVPDALAV 184

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              M          TY  L+   C+A    +A VLL  M   G      TY  ++ A+  
Sbjct: 185 FDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCN 244

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            G   +A+  +        K D   +  +   L G ER+ E   +  EM
Sbjct: 245 EGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEM 293


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 89/166 (53%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  LCK K++DEA+ +   M         +T++ ++  L +  ++  +  L
Sbjct: 250 PNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLEL 309

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+ I  + D+  YN LL A C   +L     ++K+++++ +  +  TY  L+ G C+
Sbjct: 310 VDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCK 369

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            GR+E+A+V+ + ++ +G  +   TY  ++  L + G + +A+  +
Sbjct: 370 DGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALL 415



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 98/205 (47%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    +  L+  LCK +K  +A+ ++ +M + G   + +T+  I+       ++ +A  
Sbjct: 179 FPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALN 238

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +  VM +  V P++  YN ++   C K  +     + K+M  +K+  D  TY+ L+ G C
Sbjct: 239 IFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLC 298

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G++  +  L+  M   G++V   TY  ++ AL +  +  QA+  V     + I+ +  
Sbjct: 299 KLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVC 358

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            + +L   L    R  +A  I +E+
Sbjct: 359 TYTTLIDGLCKDGRLEDAYVIFQEI 383



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCKL KI  +L +VD M   G  +  IT++ +L  L +   +++A  L
Sbjct: 285 PDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITL 344

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ +K+  + P++  Y  L+   C  G L     + +++  E       TY+ ++ G C+
Sbjct: 345 VKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCK 404

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G  +EA  LL RM D+       +Y  ++ AL   G
Sbjct: 405 KGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKG 441



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 4/207 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y T+I  LCK K + +A R+   M   G   +  TF  ++  L + ++ ++A  L+ +M 
Sbjct: 150 YSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMM 209

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  V P++  Y  ++  YC    +     +   M +E +  +   Y+ ++ G C+  RV+
Sbjct: 210 KKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVD 269

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGS 283
           EA  L + M     +    TY  ++  L +LG  + +++ V  M   G+ + + T  + S
Sbjct: 270 EAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIIT--YNS 327

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           L   L      ++A  ++KE+  + ++
Sbjct: 328 LLHALCKNHHLDQAITLVKEIKDQGIQ 354



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 93/209 (44%), Gaps = 3/209 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI  +C   +  EAL   D +   GF L  +++  +++ L    +M E    
Sbjct: 78  PNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLC---KMGETRAA 134

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M+++++  V+ D+  Y+ ++ + C    +T    +  +M  + +  +  T+  LV   C+
Sbjct: 135 MQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCK 194

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             + ++A  LL  M+  G      TY  +M     +    +A+    V     ++ +   
Sbjct: 195 DRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWC 254

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  + + L   +R +EA  + KEM+ + +
Sbjct: 255 YNIIINGLCKKKRVDEAMNLFKEMHWKKI 283



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 53/119 (44%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           + F+ IL+ L +      A  L   ++   + P +     L+  YC  G +T    +L K
Sbjct: 11  LQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTK 70

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + +     ++ T+  L+ G C  G+  EA +    +V  G  +   +YA +M  L ++G
Sbjct: 71  ILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMG 129



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 85/202 (42%), Gaps = 3/202 (1%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           + +Y  L+  LCK+ +   A++   ++ +       + +  I+  L +GK + +A+ L  
Sbjct: 115 QVSYAILMNGLCKMGETRAAMQ---MLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYS 171

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M    + P++  ++ L+ A C          +L  M ++ +  +  TY A++ G C   
Sbjct: 172 EMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVN 231

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           +V +A  +   MV +G       Y  ++  L +     +A+        + I  D   + 
Sbjct: 232 QVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYN 291

Query: 283 SLGSKLIGLERFNEANFILKEM 304
            L   L  L + + +  ++ EM
Sbjct: 292 ILIDGLCKLGKISTSLELVDEM 313



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G  P    Y TLI  LCK  ++++A  +   +   G+ ++  T++ +++ L +    +
Sbjct: 350 DQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFD 409

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           EA  L+  M++    PD  +Y  ++ A   KG    T+ +L  M
Sbjct: 410 EALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAM 453


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 98/205 (47%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           +AY++++  L K KK+D A  +   M   G   + +T+  ++      ++ME+A  L++ 
Sbjct: 289 TAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDD 348

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M +   +PD+  Y  +++A C +  +    GVL+KM E     +  TY+AL+ G C   R
Sbjct: 349 MIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRR 408

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
            EEA  L+  M   G      TY  +   L +L    +A +       R +K +   + +
Sbjct: 409 PEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNT 468

Query: 284 LGSKLIGLERFNEANFILKEMNKRD 308
           L +      R  EA  ILKEM++ D
Sbjct: 469 LLNGYCRGSRLIEAMDILKEMHQND 493



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC +++ +EAL +V +M +GG   +  T+  +   L + +R++ A  +
Sbjct: 391 PNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEM 450

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                   + P+   YN LL  YC    L     +LK+M +     D  TY  L+ G  +
Sbjct: 451 FNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQ 510

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             ++ +A  +   M + G  V + T   +   L R+G +  A  F
Sbjct: 511 GNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIF 555



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 11/242 (4%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E+++ +L D+ +     +   P    Y  +I  LCK K I++A  V+  M E G   +  
Sbjct: 340 EDAMKLLDDMIQ-----NNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIY 394

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T++ ++  L   +R EEA  L+ +M++  V P++  Y  L    C    L     +  + 
Sbjct: 395 TYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEA 454

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
               L  +  TY+ L+ G CR  R+ EA  +L+ M  +  +  + TY  ++  L++    
Sbjct: 455 LARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQL 514

Query: 260 AQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRD 317
             A++    M   G D+  DT     L   L  +    +A+   + M  +D    +   D
Sbjct: 515 PDALRMHDEMENKGYDVNFDT--LNILARGLARVGNHKDASIFYRRM--KDRGFAYSASD 570

Query: 318 YY 319
           YY
Sbjct: 571 YY 572



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 2/180 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L   LCKL+++D A  + +     G   + +T++ +L+   RG R+ EA  +
Sbjct: 426 PNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDI 485

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +   +PD   Y  L+        L     +  +ME +    +  T + L  G  R
Sbjct: 486 LKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLAR 545

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY--AQAVKFVMVCGGRDIKLDT 278
            G  ++A +  RRM D G +   S Y   +  L   G    AQA+ + M+  G    L T
Sbjct: 546 VGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTT 605



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 53/110 (48%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M + GF  SA  ++  +  L+    MEEA  L+  M     SP+LT YN ++  +C +G 
Sbjct: 559 MKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGR 618

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L     +L  M E  +G D  +Y+ L+      GR ++A  L    ++ G
Sbjct: 619 LDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALERG 668



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 4/140 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  L +  ++ +ALR+ D M   G+ ++  T + +   L R    ++A   
Sbjct: 496 PDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIF 555

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFK--GNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
              MK+   +   +A +Y L  +C    G +     +L +M  +    +  TY+ ++ G 
Sbjct: 556 YRRMKDRGFA--YSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGF 613

Query: 219 CRAGRVEEAFVLLRRMVDDG 238
           CR GR+++A  +L  M+++G
Sbjct: 614 CRQGRLDDADAMLNFMIENG 633



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 68/157 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+TL+   C+  ++ EA+ ++  M +       +T+  ++  L +G ++ +A  +
Sbjct: 461 PNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRM 520

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M+      +    N L       GN    S   ++M++      A  Y   +     
Sbjct: 521 HDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLST 580

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           AG +EEA  LL  M++ G S   +TY  ++    R G
Sbjct: 581 AGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQG 617



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 2/195 (1%)

Query: 118 KIDEALRVVDIMAEGGF--GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
           +  E+L   ++M E G+  GL    ++ +L  L + K+++ A  L   M    VS +   
Sbjct: 266 RFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLT 325

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           Y  ++  +  K  +     +L  M +     D  TY  ++   C+   +E+A+ +L++M 
Sbjct: 326 YTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMR 385

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
           ++G      TY  ++  L  +    +A++ V +     +  +   +  L   L  L R +
Sbjct: 386 ENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLD 445

Query: 296 EANFILKEMNKRDLK 310
            A  +  E   R LK
Sbjct: 446 RAKEMFNEALARGLK 460



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 8/228 (3%)

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAE 131
            N  T+ +N+L          A   +G+   + AY T+I  L + K   E   ++  M  
Sbjct: 190 LNLQTDAQNALRFFQ-----WADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQT 244

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL--TAYNYLLTAYCFKGNL 189
            G  ++    H  +    R  R +E+     +MKE+   P L  TAYN +L +      L
Sbjct: 245 QGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKL 304

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  +M    +  +  TY +++       ++E+A  LL  M+ +  +    TY  V
Sbjct: 305 DMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIV 364

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           + AL +     QA   +        + +   + +L   L  + R  EA
Sbjct: 365 ISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEA 412


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHE-RDLETVRYLLNKRARDCCFNTANTF 73
           Q++ +       G  PD  T   Y+ +VN    E R  + + +L N  +  C  NT  ++
Sbjct: 213 QAMKLLDEMRDKGCTPDIVT---YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTV-SY 268

Query: 74  NFITNTENSLSVLSDLCRTLARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAE 131
           N +     +     D    +  +  KG P     ++ LI  LC+   ++ AL V++ + +
Sbjct: 269 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 328

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G   ++++++P+L    + K+M++A   +++M      PD+ +YN LLTA C  G +  
Sbjct: 329 YGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 388

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +L +++++       +Y+ ++ G  +AG+ +EA  LL  MV  G      TY+ +  
Sbjct: 389 AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA 448

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            L R      A++         I+ +T L+ ++   ++GL +  E +
Sbjct: 449 GLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI---ILGLCKRRETH 492



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 2/184 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P   +Y+TL+  LC+  ++D A+ ++  + + G     I+++ ++  LT+  + +EA  
Sbjct: 367 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 426

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M    + PD+  Y+ +    C +  +        K+++  +  +   Y+A++LG C
Sbjct: 427 LLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLC 486

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLD 277
           +      A  L   M+ +G     STY  ++  L   G   +A   +  +   G +I LD
Sbjct: 487 KRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGEEILLD 546

Query: 278 TELF 281
             L 
Sbjct: 547 VHLI 550



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 87/188 (46%), Gaps = 5/188 (2%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           T N+L+VL ++ R      +  P    Y  L+   CK     +A++++D M + G     
Sbjct: 176 TANALAVLDEMLRR-----RCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDI 230

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T++ +++ + +  R+++A   ++ +      P+  +YN +L   C          ++ +
Sbjct: 231 VTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGE 290

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M ++    +  T++ L+   CR G VE A  +L ++   G S    +Y  ++ A  +   
Sbjct: 291 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKK 350

Query: 259 YAQAVKFV 266
             +A+ F+
Sbjct: 351 MDKAMAFL 358



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 3/153 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ ++   C   ++D A R     AE      A T   ++  L    R   A  +
Sbjct: 126 PDVMAYNAMMAGYCGAGQVDAARRWC---AERAVERDAYTCDTLIRGLCGRGRTANALAV 182

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M   R  PD+  Y  LL A C +        +L +M ++    D  TY+ +V G C+
Sbjct: 183 LDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 242

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            GRV++A   L+ +   G      +Y  V+  L
Sbjct: 243 EGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 275



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           DTLI  LC   +   AL V+D M         +T+  +L    +    ++A  L++ M++
Sbjct: 164 DTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRD 223

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
              +PD+  YN ++   C +G +      LK +       +  +Y+ ++ G C A R E+
Sbjct: 224 KGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWED 283

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           A  L+  M   G      T+  ++  L R G    A++ +
Sbjct: 284 AEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 323



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 83/222 (37%), Gaps = 41/222 (18%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           ++DEALR+V        G    T   ++  L+   R  EA  ++         PD+ AYN
Sbjct: 82  ELDEALRLVGSARRPDAG----TCAALIKKLSASGRTAEARRVLAA-----CGPDVMAYN 132

Query: 178 YLLTAYCFKGNLTATS--------------------------------GVLKKMEEEKLG 205
            ++  YC  G + A                                   VL +M   +  
Sbjct: 133 AMMAGYCGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCV 192

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            D  TY  L+   C+    ++A  LL  M D G +    TY  V+  + + G    A++F
Sbjct: 193 PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF 252

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +        + +T  +  +   L   ER+ +A  ++ EM ++
Sbjct: 253 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQK 294


>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
 gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
          Length = 695

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK  +++EA +++  M + GF  S   +  +LS L R  R+++A+ L
Sbjct: 432 PNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFEL 491

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M  I     + + N LL     +G++      LK+M +  +  D  TYD LV+G C 
Sbjct: 492 YKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCW 551

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G+ ++A  L+  +V DG+         ++GAL   G +  A +F
Sbjct: 552 QGKADQARKLVEELVRDGKRPENQGLRQLLGALCAQGDFQGAYEF 596



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 16/247 (6%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT------- 77
           ++G FP+   +  Y++L++       L      L +  + C  N   ++N I        
Sbjct: 3   EAGLFPN---AILYNNLISCLCKAGMLAEAESYLKRMPQHCAPNVV-SYNIIIDGYCKAR 58

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           N E +L+ L    R +  L    P   AY +++   CK   + +A+ V   M   G    
Sbjct: 59  NIEKALAFL----REMEELGHP-PTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPD 113

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            + F+ +LS L R +++ EA  L   M      PD+  YN ++   C    L     +L+
Sbjct: 114 IVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLE 173

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M++E +     TY  L+   C+  R+++A+ +  +M +   +     Y+ +   L R G
Sbjct: 174 RMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAG 233

Query: 258 YYAQAVK 264
              +A +
Sbjct: 234 KLVEASR 240



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 1/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  L + +KI EA  +   M   G     +T++ +++ L + K+++EA  L
Sbjct: 112 PDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFL 171

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E MK+  VSP    Y  L+   C    L     V +KM E         Y  L     R
Sbjct: 172 LERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQR 231

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL-GYYAQAVKFVMVCGGRDIKLDTE 279
           AG++ EA  +   M      +  +TY+ V+  L ++ G   +A K V    G+ I  D  
Sbjct: 232 AGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFY 291

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +  L + L    R  EA  + +EM  R +
Sbjct: 292 AYSILINGLCKARRPGEAKEMFQEMRGRGI 321



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 1/185 (0%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M E G   +AI ++ ++S L +   + EA   ++ M +   +P++ +YN ++  YC   N
Sbjct: 1   MLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARN 59

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +      L++MEE         Y ++V   C+ G V +A  +   M   G       +  
Sbjct: 60  IEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNV 119

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++  L R     +A +       R  K D   + ++ + L   ++ +EA F+L+ M + D
Sbjct: 120 LLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQED 179

Query: 309 LKMGF 313
           +   F
Sbjct: 180 VSPTF 184



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 1/205 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+ LI  LCK   + EA   +  M +     + ++++ I+    + + +E+A  
Sbjct: 7   FPNAILYNNLISCLCKAGMLAEAESYLKRMPQHC-APNVVSYNIIIDGYCKARNIEKALA 65

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +  M+E+   P   AY+ ++ ++C  GN++    V  +M  +    D   ++ L+ G  
Sbjct: 66  FLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLW 125

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           RA ++ EA  L R M   G      TY  ++  L +     +AV  +      D+     
Sbjct: 126 RARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFV 185

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            + +L   L    R  +A  + ++M
Sbjct: 186 TYTTLIDHLCKFTRLQQAYEVFEKM 210



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 95/210 (45%), Gaps = 4/210 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  LI  LCK ++  EA  +   M   G   + +T++ +L  L    ++++A  L
Sbjct: 288 PDFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMEL 347

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +    PD  +YN ++  +C  G+      + + M ++ +  +  TY+ +++G  +
Sbjct: 348 TYFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIK 407

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYS----TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
                 A++L +RM       + +    TY  ++ +L +     +A K +     +    
Sbjct: 408 DEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVP 467

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNK 306
             +++  L S+L    R ++A  + KEM++
Sbjct: 468 SLKIWEVLLSRLARAGRLDDAFELYKEMSR 497



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 3/199 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LCK KK+DEA+ +++ M +     + +T+  ++  L +  R+++A+ +
Sbjct: 147 PDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEV 206

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M E   +    AY+ L       G L   S V   M  + +     TY  +VLG  +
Sbjct: 207 FEKMAEGPCACTEPAYSVLFNKLQRAGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSK 266

Query: 221 --AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
              G VE A  L+  M+    +  +  Y+ ++  L +     +A +      GR I    
Sbjct: 267 MDGGNVEAA-KLVTEMMGKKIAPDFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTV 325

Query: 279 ELFGSLGSKLIGLERFNEA 297
             + +L   L+   +  +A
Sbjct: 326 VTYNTLLEGLLSTAKLQDA 344



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P   +Y+ +I   C     +EA  +   M + G  L+  T++ ++    + +  
Sbjct: 352 LDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIKDEAW 411

Query: 155 EEAWGLMEVMKEIR----VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             AW L + M+  +     +P++  Y  L+++ C    +     +L  M ++      + 
Sbjct: 412 SSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKI 471

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           ++ L+    RAGR+++AF L + M       L  +   ++  +LR G   +A  F+
Sbjct: 472 WEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFL 527


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 2/233 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+N       L     L ++           T+N + +      +  +  RT
Sbjct: 112 PNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRT 171

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
            +++  +   P    + TLI  L K  K+ EA ++ ++M + G   + +T++ +L+ L  
Sbjct: 172 FSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCL 231

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +M+ A  L EVM E  +  D+ +YN L+  YC  G       + +KM+ E+L     T
Sbjct: 232 HHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITT 291

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           Y  L+    + GR+  A  L   M   GQS    TY  ++  L + G   +A+
Sbjct: 292 YTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAI 344



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 88/205 (42%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  +I  LCK     + L++   M   G   + I +  +++ L R  ++ EA  L + M
Sbjct: 81  TYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEM 140

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               +  ++  YN L+ A C  G     +    +M  E +  D  T+  L+    + G+V
Sbjct: 141 VSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKV 200

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA+ +   M+  G++    TY  ++  L        AV+   V   R IK+D   + +L
Sbjct: 201 QEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTL 260

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            +      +  EA  + ++M   +L
Sbjct: 261 INGYCTSGKTEEAMTLFRKMQYEEL 285



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 84/207 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P      TL+  +C   K+ +AL + D M   GF    + +  +++ L + ++   A  L
Sbjct: 7   PNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVEL 66

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M     S +   Y  ++ + C  G       + ++M    +  +   Y +L+ G CR
Sbjct: 67  HRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCR 126

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ EA  L   MV  G      TY  ++ A  R G + +A +      G  I  D   
Sbjct: 127 VGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVT 186

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           F +L   L    +  EA  I + M K+
Sbjct: 187 FTTLIDHLSKKGKVQEAYKIFELMIKQ 213



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 63/134 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK   I+EA+ V   +    +  S   +  ++  + + +R E A  +
Sbjct: 322 PSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEI 381

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +  + + P++  YN ++   C +G L     +  +MEE     D  +++ ++ G  +
Sbjct: 382 FDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQ 441

Query: 221 AGRVEEAFVLLRRM 234
             +V++A   L+RM
Sbjct: 442 ENQVQKAMEFLKRM 455



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 10/205 (4%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+TLI   C   K +EA+ +   M       S  T+  +L  L +  R+  A  L   M
Sbjct: 256 SYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNM 315

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +    SP L  Y  LL   C  G +     V + ++  K     R Y  L+ G  +A R 
Sbjct: 316 QICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRW 375

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVMV----CGGRDIKLDTE 279
           E A  +   +   G      TY  ++  L + G   +A + FV +    C   +I  +  
Sbjct: 376 ESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFI 435

Query: 280 LFGSLGSKLIG-----LERFNEANF 299
           + G L    +      L+R  E NF
Sbjct: 436 IRGFLQENQVQKAMEFLKRMREKNF 460



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 88/210 (41%), Gaps = 23/210 (10%)

Query: 1   MSLLRKLPTKFLIPQSVLVT---RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYL 57
           M+L RK+  + L P     T   ++  ++G      T+    + +   G    L+T   L
Sbjct: 274 MTLFRKMQYEELTPSITTYTILLKALYQNGRIR---TAKELFNNMQICGQSPSLDTYTVL 330

Query: 58  LNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLK 117
           L+   ++ C   A                 D+ R+L  + K  P    Y  LIG + + +
Sbjct: 331 LDGLCKNGCIEEA----------------IDVFRSLKSI-KYKPSIRIYSILIGGMFQAR 373

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           + + A+ + D +   G   + +T++ +++ L +  ++ EA  L   M+E     D  ++N
Sbjct: 374 RWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFN 433

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           +++  +  +  +      LK+M E+    +
Sbjct: 434 FIIRGFLQENQVQKAMEFLKRMREKNFSPN 463


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 4/213 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TL+  LCK  ++ +A ++++ M E G      TF  ++    R    E A  
Sbjct: 364 LPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQ 423

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + +   R+ PD+  YN L+   C KG+L   + +   M   ++  +  TY  L+   C
Sbjct: 424 LFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHC 483

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             G+VE+AF  L  MV  G      TY  ++    R G   +  +F+      ++  D  
Sbjct: 484 EKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLI 543

Query: 280 LFGSLGSKLIGLER----FNEANFILKEMNKRD 308
            F +L    I  E     FN  N + KEM + D
Sbjct: 544 TFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPD 576



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 76/166 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  LI   C+  ++++A   +D M + G   +  T++ I+    R   +++   
Sbjct: 469 LPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQ 528

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            ++ M++  V PDL  +N L+  Y  + N+     V   ME+E +  DA TY+ ++ G  
Sbjct: 529 FLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFS 588

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             G +++A  + + M D G      TY  ++   +  G   QA + 
Sbjct: 589 EQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQL 634



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 125/303 (41%), Gaps = 25/303 (8%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V     K   FPD  T   ++ L++A     D++    L++  A         T+N    
Sbjct: 179 VISEMEKRCVFPDVVT---HNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYN---- 231

Query: 79  TENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVV 126
                SVL  LC+   R DK              P   +++ LIG  C++ ++ EA++  
Sbjct: 232 -----SVLKGLCKH-RRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFY 285

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M         ++F  ++ + +R   M+ A   +  MK + + PD   Y  ++  +C  
Sbjct: 286 KEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRA 345

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G+++    V  +M       D  TY+ L+ G C+  R+ +A  LL  M + G +    T+
Sbjct: 346 GSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTF 405

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             ++    R G +  A++       + ++ D   + SL   +       +AN +  +M+ 
Sbjct: 406 TTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHA 465

Query: 307 RDL 309
           R++
Sbjct: 466 REI 468



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 4/209 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           P    Y+ L++    + DL     L +   AR+   N   T++ + ++      + D   
Sbjct: 435 PDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHI-TYSILIDSHCEKGQVEDAFG 493

Query: 92  TLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  + K    P    Y+++I   C+   + +  + +  M +       ITF+ ++    
Sbjct: 494 FLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYI 553

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + + M  A+ +  +M++  V PD   YN ++  +  +GN+     V K M +  +  D  
Sbjct: 554 KEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRY 613

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY +L+ G   AG  ++AF L   M+  G
Sbjct: 614 TYMSLINGHVTAGNSKQAFQLHDEMIHRG 642



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 16/181 (8%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + ++   CK  + D A  V+  M +       +T + ++    R   ++ A  L++ M  
Sbjct: 161 NIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMAN 220

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + P +  YN +L   C          V + M++  +  D R+++ L+ G CR G V+E
Sbjct: 221 RGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKE 280

Query: 227 AFVLLRRM-----VDDGQSV-----LYSTYAHV--MGALLR----LGYYAQAVKFVMVCG 270
           A    + M       D  S      L+S    +   GA LR    LG     V + MV G
Sbjct: 281 AVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIG 340

Query: 271 G 271
           G
Sbjct: 341 G 341



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 10/212 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG---KRMEEA 157
           P+   +D LI    + +K  EA     ++ +    + A   + +L+VL+R       +EA
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEA 144

Query: 158 WGLMEVMKEIRVSPDLTAY--NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           + L+     +    ++ AY  N ++ +YC          V+ +ME+  +  D  T++ L+
Sbjct: 145 YRLV-----LSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLI 199

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
               RAG V+ A  L+  M + G      TY  V+  L +   + +A +         + 
Sbjct: 200 DARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVA 259

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            D   F  L      +    EA    KEM  R
Sbjct: 260 PDVRSFNILIGGFCRVGEVKEAVKFYKEMQHR 291


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG  P    Y  L+   CK  ++DEAL ++  MA  G   + +TF+ I+  L +  R 
Sbjct: 285 VDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRS 344

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+ +   +    + PD   +N L+   C  GN    S + ++M  + +  D  T+ AL
Sbjct: 345 GEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGAL 404

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGR 272
           + G C+AG+VE A  +L  M + G      TY  ++  L + G   +  +F+  MV  G 
Sbjct: 405 IDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSG- 463

Query: 273 DIKLDTELFGSLGSKLIGLERFNEA 297
               ++  +GSL   L    R ++A
Sbjct: 464 -CVPESMTYGSLVYALCRASRTDDA 487



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 18/283 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN--TFNFITNTENSLSVLSDLC 90
           P    Y  L+N       ++  R L+ +  R  C    N  T+N   +     S+ ++ C
Sbjct: 149 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 208

Query: 91  RTLARLDKGF----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
             +  L  G     P    + TLI  LCK  + DEA    D M  GG+  + +T++ +++
Sbjct: 209 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVN 266

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L +  +ME A  ++E M +  V+PD+  Y+ L+ A+C    +     +L  M       
Sbjct: 267 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 326

Query: 207 DARTYDALVLGACRAGRVEEAF-----VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           +  T+++++ G C++ R  EAF     V  R +V D       T+  ++    + G + Q
Sbjct: 327 NVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPD-----KVTFNILIAGACKAGNFEQ 381

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           A         ++++ D   FG+L   L    +   A  IL  M
Sbjct: 382 ASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLM 424



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 113/275 (41%), Gaps = 25/275 (9%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
            S    G  PD  T   Y  LV+A      ++    LL+  A   C     TFN      
Sbjct: 282 ESMVDKGVTPDVIT---YSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFN------ 332

Query: 81  NSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
              S++  LC++  R  + F            P K  ++ LI   CK    ++A  + + 
Sbjct: 333 ---SIIDGLCKS-DRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEE 388

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M         +TF  ++  L +  ++E A  ++++M  + V P++  YN L+   C  G 
Sbjct: 389 MVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGR 448

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +      L++M       ++ TY +LV   CRA R ++A  L+ ++   G      TY  
Sbjct: 449 IEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNI 508

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           ++  L + G   QA+  +    G+  + D+  F +
Sbjct: 509 LVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAA 543



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI  LCK  +++ A  ++D+M   G   + +T++ ++  L +  R+EE    
Sbjct: 396 PDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEF 455

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M      P+   Y  L+ A C          ++ K++      D  TY+ LV G  +
Sbjct: 456 LEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWK 515

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           +G+ E+A  +L  MV  G      T+A   G L R G  A  ++ + V
Sbjct: 516 SGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRV 563



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 123/304 (40%), Gaps = 31/304 (10%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
             K G  PD  T   Y+ L+++     DLE  R L    +   C     T++ + N    
Sbjct: 107 LVKRGHHPDVVT---YNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLIN---- 159

Query: 83  LSVLSDLCRTLARLDKG--------------FPRKSAYDTLIGRLCKLKKIDEALRVVDI 128
                 LC+ + R+D+                P    Y++ +  LCK     EA  ++  
Sbjct: 160 -----GLCK-VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 213

Query: 129 MAEGGFGLS--AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           + +G   +S   +TF  ++  L +  + +EA    + M      P++  YN L+   C  
Sbjct: 214 LRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKA 271

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             +     +++ M ++ +  D  TY  LV   C+A RV+EA  LL  M   G +    T+
Sbjct: 272 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTF 331

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             ++  L +     +A +  +    R +  D   F  L +       F +A+ + +EM  
Sbjct: 332 NSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVA 391

Query: 307 RDLK 310
           ++++
Sbjct: 392 KNMQ 395



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 5/197 (2%)

Query: 106 YDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           Y+ ++  LC+  +   AL +    MA  G   + +T++ I++ L +   +     L E +
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    PD+  YN L+ + C  G+L     +   M       +  TY  L+ G C+ GR+
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRI 167

Query: 225 EEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTEL 280
           +EA  L++ M      VL +  TY   +  L +    A+A + +  +  G   +  DT  
Sbjct: 168 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 227

Query: 281 FGSLGSKLIGLERFNEA 297
           F +L   L    + +EA
Sbjct: 228 FSTLIDGLCKCGQTDEA 244



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 110/253 (43%), Gaps = 24/253 (9%)

Query: 73  FNFITNTENSLS----VLSDLCRT-------------LARLDKGFPRKSAYDTLIGRLCK 115
           F F+ ++  S++    VL  LCR              +AR D   P    Y+T+I  LCK
Sbjct: 35  FFFVRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMAR-DGVAPTIVTYNTIINGLCK 93

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
             ++   + + + + + G     +T++ ++  L +   +EEA  L   M      P++  
Sbjct: 94  SNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVT 153

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGA--DARTYDALVLGACRAGRVEEAFVLLRR 233
           Y+ L+   C  G +     ++++M  +      +  TY++ + G C+     EA  L+R 
Sbjct: 154 YSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 213

Query: 234 MVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
           + D    V     T++ ++  L + G   +A    M+ GG    + T  + +L + L   
Sbjct: 214 LRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVT--YNALVNGLCKA 271

Query: 292 ERFNEANFILKEM 304
           ++   A+ +++ M
Sbjct: 272 DKMERAHAMIESM 284



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCK  +I+E    ++ M   G    ++T+  ++  L R  R ++A  L
Sbjct: 431 PNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQL 490

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +K     PD   YN L+      G       VL++M  +    D+ T+ A   G  R
Sbjct: 491 VSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHR 550

Query: 221 AGRVEEAFVLLRRMVDDG 238
           +G +     LLR ++  G
Sbjct: 551 SGNLAGTMELLRVVLAKG 568



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 54/115 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+  LC+  + D+AL++V  +   G+    +T++ ++  L +  + E+A  +
Sbjct: 466 PESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITV 525

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +E M      PD   +          GNL  T  +L+ +  + +  DA T  +++
Sbjct: 526 LEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 580


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 113/238 (47%), Gaps = 4/238 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLC 90
           EP +  Y+ +++A   E D++  R LLN   +R C  NT N +N +     S+    D  
Sbjct: 230 EPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVN-YNTVLKGFCSIERWVDAD 288

Query: 91  RTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
             L  +  +   P ++  + +I  LC+   + +    ++ M++ G   + +T++ ++S +
Sbjct: 289 EILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGM 348

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                ++ A  L+  M+     PD+  YN +L   C          ++ KM +     D 
Sbjct: 349 CEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDN 408

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            T++ ++   C+ G + +AF + ++M + G +   +TY+ ++G L + G   QA++ +
Sbjct: 409 STFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELL 466



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           LCR  A      P    Y+ L+   CK +   +AL ++D M   G   + +T++ I+  +
Sbjct: 190 LCRGCA------PDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAM 243

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            R   +++A  L+  +      P+   YN +L  +C          +L +M  E    + 
Sbjct: 244 CREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNE 303

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            T + ++   CR G +++  + L +M   G +    TY  V+  +   G    A++ +  
Sbjct: 304 ATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSN 363

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
                 K D   + ++   L   +R+ +A  ++ +M++ D
Sbjct: 364 MQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQND 403



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 80/186 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  +C+   +D+A  +++ +   G   + + ++ +L      +R  +A  +
Sbjct: 231 PNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEI 290

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M      P+    N ++   C KG L   +  L+KM +    A+  TY+A++ G C 
Sbjct: 291 LDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCE 350

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G V+ A  LL  M   G      TY  V+  L     +  A + ++     D   D   
Sbjct: 351 QGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNST 410

Query: 281 FGSLGS 286
           F ++ S
Sbjct: 411 FNTIIS 416



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  S ++T+I   C+   I +A  V   M E G   ++ T+  I+  LT+  +ME+A  
Sbjct: 405 LPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALE 464

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M     + D   Y  L  +   +  +     V+ K+++  +      Y+ ++LG C
Sbjct: 465 LLNEMANKGFNTD-KMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLC 523

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           R G+ + A  +L  MV  G     STY  ++  L   GY  +A + +     RD+
Sbjct: 524 RNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSRLCSRDV 578


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 130/295 (44%), Gaps = 13/295 (4%)

Query: 16  SVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK---RARDCCFNTANT 72
           ++++       G  P+  T     D +   G   + + V  L+ +   +A +  + T   
Sbjct: 359 AIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIH 418

Query: 73  FNFITN-TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
            +F+ N +E +L +L+ +      LD      S Y TLI  LCK +K+DEA  ++  MA 
Sbjct: 419 GHFMNNNSERALDLLNQMKNKGMELDV-----SLYGTLIWGLCKDQKVDEAKSLLHKMAG 473

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G   + + +  I+  L +  +  EA  L+  + +    P++  Y  L+   C  G+++ 
Sbjct: 474 CGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISE 533

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
                 KM E  L  + + Y AL+ G C+ G + +A  L+  M+D G S+    Y  ++ 
Sbjct: 534 AISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLID 593

Query: 252 ALLRLGYY--AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             ++      A A+K  M+  G  ++LD   +    S    +    EA  +L EM
Sbjct: 594 GYMKQANLQDAFALKTKMIESG--LQLDLYCYTCFISGFCNMNMMQEARGVLSEM 646



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 81/162 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI    K   ++E  ++V  M + G     +T++ +++  ++  RME+A+  
Sbjct: 233 PDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSY 292

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK   V  ++  ++  + A+C +G +     +  +M    +  +  TY +LV G C+
Sbjct: 293 FGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCK 352

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AGR+++A VLL  MV  G      TY  ++  L + G  A+A
Sbjct: 353 AGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEA 394



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 118/284 (41%), Gaps = 43/284 (15%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT--- 79
           F +  A    P    Y+ L++  G   DLE V  L+++  +  C     T+N + N    
Sbjct: 223 FVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSK 282

Query: 80  ----ENSLSVLSDLCR--------TLARLDKGF----------------------PRKSA 105
               E + S   ++ R        T +     F                      P +  
Sbjct: 283 FGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFT 342

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y +L+   CK  ++D+A+ ++D M   G   + +T+  ++  L +  ++ EA  ++ +M+
Sbjct: 343 YTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLME 402

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V  +   Y  L+  +    N      +L +M+ + +  D   Y  L+ G C+  +V+
Sbjct: 403 RGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVD 462

Query: 226 EAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           EA  LL +M   G    +V+Y+T   +M AL + G  ++AV  +
Sbjct: 463 EAKSLLHKMAGCGLRPNTVIYTT---IMDALFKAGKESEAVALL 503



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 91/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++  L K  K  EA+ ++  + + GF  + +T+  ++  L +   + EA   
Sbjct: 478 PNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISH 537

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+E+ + P++ AY  L+  +C  G+L     ++ +M ++ +  D   Y +L+ G  +
Sbjct: 538 FNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMK 597

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +++AF L  +M++ G  +    Y   +     +    +A   +    G  I  D  +
Sbjct: 598 QANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTV 657

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L  K   L    EA+ +  EM
Sbjct: 658 YNCLIRKYQKLGNMEEASSLQNEM 681



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 6/227 (2%)

Query: 85  VLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           +L D  R LAR+   +  P     + ++ RL + ++     R+ D++       +  TF+
Sbjct: 149 LLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFDLLPVP----NVFTFN 204

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++  L +   + EA  L   MK +  SPD+  YN L+  Y   G+L     ++ +M + 
Sbjct: 205 IVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKS 264

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              AD  TY+AL+    + GR+E+A+     M   G      T++  + A  + G   +A
Sbjct: 265 GCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEA 324

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +K       R +  +   + SL        R ++A  +L EM  + L
Sbjct: 325 MKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL 371



 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 96  LDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG    K  Y +LI    K   + +A  +   M E G  L    +   +S       M
Sbjct: 577 IDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMM 636

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +EA G++  M    ++PD T YN L+  Y   GN+   S +  +ME
Sbjct: 637 QEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEME 682


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 125/294 (42%), Gaps = 2/294 (0%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V R F        +PT   Y+ +++    E D+E  R L  +           T+N + +
Sbjct: 117 VKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMID 176

Query: 79  TENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
               +  L D       +      P    Y++LI   CK  K+ + L     M + G   
Sbjct: 177 GYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKP 236

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           + +++  ++    +   M++A      M+ +   P+   Y  L+ A C  GNL+    + 
Sbjct: 237 NVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLA 296

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            +M E  +  +  TY AL+ G C A R++EA  L  +MV  G     ++Y  ++   ++ 
Sbjct: 297 NEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKA 356

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               +A++ +    GR I+ D  L+G+    L GLE+   A  ++ EM +  +K
Sbjct: 357 KNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIK 410



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 2/205 (0%)

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKID 120
           R+ C      F+ + +    L +L +  +  +++ +   FP+  + + L+ +  KL K D
Sbjct: 56  RNVCVPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTD 115

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
              R    M   G   +  T++ ++  + +   +E A GL E MK   + PD   YN ++
Sbjct: 116 GVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMI 175

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             Y   G L  T    ++M+      D  TY++L+   C++G++ +     R M   G  
Sbjct: 176 DGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLK 235

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKF 265
               +Y+ ++ A  +     QA+KF
Sbjct: 236 PNVVSYSTLVDAFCKEDMMQQAIKF 260



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +L+   CK+  + +A R+ + M E G   + +T+  ++  L   +RM+EA  L
Sbjct: 271 PNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKL 330

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    V P+L +YN L+  +    N+     +L +++   +  D   Y   + G C 
Sbjct: 331 FGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCG 390

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
             ++E A V++  M ++G       Y  +M A  + G
Sbjct: 391 LEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSG 427



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 70/160 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  LC  +++ EA ++   M   G   +  +++ ++    + K M+ A  L+  +K
Sbjct: 311 YTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 370

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PDL  Y   +   C    + A   V+ +M+E  + A+   Y  L+    ++G   
Sbjct: 371 GRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPT 430

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           E   LL  M +    V   T+  ++  L +    ++A+ +
Sbjct: 431 EGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDY 470



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           LI  LCK K + +A+     M+   FGL  +A  +  ++  L +  +++ A  L E M +
Sbjct: 454 LIDGLCKNKLVSKAIDYFGRMS-NDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQ 512

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + PD TAY  L+     +GN+     +  KM E  +  D   Y +LV G  +  ++++
Sbjct: 513 EGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQK 572

Query: 227 AFVLLRRMVDDGQSVL 242
           A   L  M+  G+ +L
Sbjct: 573 ARSFLEEMI--GEEIL 586



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  ++Y+ LI    K K +D AL +++ +   G     + +   +  L   +++E A  
Sbjct: 340 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKV 399

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +M  M+E  +  +   Y  L+ AY   GN T    +L++M+E        T+  L+ G C
Sbjct: 400 VMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLC 459

Query: 220 RAGRVEEAFVLLRRMVDD 237
           +   V +A     RM +D
Sbjct: 460 KNKLVSKAIDYFGRMSND 477



 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 46/107 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  +I  LCK  ++  A  + + MA+ G       +  ++    +   M EA  L
Sbjct: 482 PNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALAL 541

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            + M EI +  DL AY  L+  +     L      L++M  E++  D
Sbjct: 542 RDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPD 588


>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
 gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
          Length = 445

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 133/301 (44%), Gaps = 16/301 (5%)

Query: 18  LVTRSFTKSGAFPDE-----------PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCC 66
           L+ + F+++G F DE           P S  Y+ L++A      ++  R  L   A+   
Sbjct: 56  LMLKGFSEAG-FVDEAKSHLHRMDCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGV 114

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKSA-YDTLIGRLCKLKKIDEALR 124
                T+N +        +L +    +  ++  GF   +  ++ ++  LCK  + DEA +
Sbjct: 115 APNRVTYNAMATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACK 174

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           V++ M       + +T + IL    +  R EEA G+ ++M E+   P +  +N LL  +C
Sbjct: 175 VMETMLLRNIEPNILTLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFC 234

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV-LY 243
               + + + +L+ M   K   +  TY  +V      GR+ EA   L ++V  G +  L 
Sbjct: 235 NTDQMDSAAKLLETMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLL 294

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
              A+V G L + G    A +F+ V      + +T  + SL      L R +EA  +L+E
Sbjct: 295 VCNAYVAG-LCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEE 353

Query: 304 M 304
           M
Sbjct: 354 M 354



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 39/242 (16%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + ++   CK  + +EAL + DIM E GF  + +TF+ +L +     +M+ A  L
Sbjct: 186 PNILTLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKL 245

Query: 161 MEVMKEIRVSPDLTAYNYLLTAY-----------------------------------CF 185
           +E M   +  P+   Y+ ++  +                                   C 
Sbjct: 246 LETMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCK 305

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G +   S  L  M EE   A+  TY++LV G C+ GR++EA  +L  M+ +G     +T
Sbjct: 306 TGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTT 365

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDI---KLDTELFGSLGSKLIGLERFNEANFILK 302
           Y+ ++  L   G    A   VM+   R +   + D   F  L  KL  L   + A  +L+
Sbjct: 366 YSVLIQGLCSAGQIEHAF-MVMLQVTRAVESARPDPATFVKLIEKLCELGEMDRAALVLE 424

Query: 303 EM 304
            M
Sbjct: 425 RM 426



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 5/161 (3%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGL-SAITFHPI-LSVLTRGKRMEEAWGLMEV 163
           Y TL+   C   + DEA R+V+   + G    S +  H + L   +    ++EA   +  
Sbjct: 17  YGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKSHLHR 76

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M      P+  +YN L+ A C  G +      L+ M +  +  +  TY+A+  G  +AG 
Sbjct: 77  MD---CKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGL 133

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           ++EAF L+  M   G ++   T+  V+  L + G   +A K
Sbjct: 134 LDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACK 174


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 8/214 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+G  C   KI++ALR+   M   G   S  TF  +LS L R   + +A  L
Sbjct: 470 PTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKL 529

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V P+   YN ++  YC +GN++     L +M E+ +  D  +Y  L+ G C 
Sbjct: 530 FTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCL 589

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+  EA V +  +      +    Y  ++    R G   +A+      G R + LD   
Sbjct: 590 TGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVC 649

Query: 281 FGSL--GSKLIGLERFNEANF--ILKEMNKRDLK 310
           +G L  GS    L+  +   F  +LKEM+ R LK
Sbjct: 650 YGVLIDGS----LKHKDRKVFLGLLKEMHDRGLK 679



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 98/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P ++A  +L+  L K  K++EAL +V  +AE G   +   ++ ++  L +G+  +EA  L
Sbjct: 330 PSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELL 389

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +I + P+   Y+ L+  +C +G L      L +M +  L      Y++L+ G C+
Sbjct: 390 FDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCK 449

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +  A  L+  M++        TY  +MG     G   +A++      G+ I      
Sbjct: 450 FGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYT 509

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F +L S L       +A  +  EM + ++K
Sbjct: 510 FTTLLSGLFRAGLIRDAVKLFTEMAEWNVK 539



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 13/221 (5%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G  P    Y ++I    K     EA  + D+M   G   + +T+  +++ L +   + 
Sbjct: 675 DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE------EKLGADAR 209
           EA  L   M+     P+   Y       CF   LT   G +KK  E      + L A+  
Sbjct: 735 EAEILCSKMRPGNSVPNQVTYG------CFLDILTKGVGDMKKAVELHNAILKGLLANTA 788

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ L+ G CR GR+EEA  L+ RM+ DG S    TY  ++  L R     +A++     
Sbjct: 789 TYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSM 848

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + I+ D   + +L           +A  +  EM ++ LK
Sbjct: 849 TEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLK 889



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+  LCK+++ +  L ++D M    F  S      ++  L +  ++EEA  L
Sbjct: 295 PDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNL 354

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ + E  VSP++  YN L+ + C   N      +  +M +  L  +  TY  L+   CR
Sbjct: 355 VKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCR 414

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G+++ A   L  M+D G       Y  ++    + G  + A
Sbjct: 415 RGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAA 456



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 1/168 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++KG  P   +Y  LI  LC   +  EA   VD + +G   L+ I +  +L    R  ++
Sbjct: 569 IEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKL 628

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           EEA  + + M    V  DL  Y  L+       +     G+LK+M +  L  D   Y ++
Sbjct: 629 EEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSM 688

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +    + G  +EAF +   M+++G      TY  V+  L + G+  +A
Sbjct: 689 IDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEA 736



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 35/201 (17%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C+  K+D AL  +  M + G   S   ++ +++   +   +  A  L
Sbjct: 400 PNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESL 459

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNL-----------------------TATSGVLK 197
           M  M   ++ P +  Y  L+  YC KG +                       T  SG+ +
Sbjct: 460 MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFR 519

Query: 198 ------------KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
                       +M E  +  +  TY+ ++ G C  G + +AF  L  M++ G      +
Sbjct: 520 AGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYS 579

Query: 246 YAHVMGALLRLGYYAQAVKFV 266
           Y  ++  L   G  ++A  FV
Sbjct: 580 YRPLIHGLCLTGQASEAKVFV 600



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 59/130 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  L+   C+  K++EAL V   M   G  L  + +  ++    + K  +   GL++ M
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEM 673

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  + PD   Y  ++ A    G+     G+   M  E    +  TY A++ G C+AG V
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFV 733

Query: 225 EEAFVLLRRM 234
            EA +L  +M
Sbjct: 734 NEAEILCSKM 743



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI  LCK +K+ EA+ +   +A        +T+  ++  L + +  E    +++ M 
Sbjct: 265 YNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEML 324

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            +R SP   A + L+     +G +     ++K++ E  +  +   Y+AL+   C+    +
Sbjct: 325 RLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFD 384

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           EA +L  RM   G      TY+ ++    R G    A+ F+
Sbjct: 385 EAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFL 425



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 71/155 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LC+LK +  A  ++  M   G  ++ + ++ ++  L + +++ EA G+
Sbjct: 225 PDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGI 284

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +    + PD+  Y  L+   C          ++ +M   +         +LV G  +
Sbjct: 285 KKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRK 344

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G+VEEA  L++R+ + G S     Y  ++ +L +
Sbjct: 345 RGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCK 379



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 52/112 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+ LI   C+  +++EA  ++  M   G     IT+  ++S L R   +++A  L   
Sbjct: 788 ATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNS 847

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           M E  + PD  AYN L+   C  G +   + +  +M  + L  +  T +  +
Sbjct: 848 MTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTI 899



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 78/207 (37%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P       L+  L K +    A+ + D M   G       +  ++  L   K +  A  
Sbjct: 189 LPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKE 248

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M+      ++  YN L+   C K  +    G+ K +  ++L  D  TY  LV G C
Sbjct: 249 MIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLC 308

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +    E    ++  M+    S   +  + ++  L + G   +A+  V       +  +  
Sbjct: 309 KVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIF 368

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
           ++ +L   L     F+EA  +   M K
Sbjct: 369 VYNALIDSLCKGRNFDEAELLFDRMGK 395


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     +  +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L   M   G      TY  ++    + G+   A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 20/216 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           + A+G + D+ T   L+N   ++   + AN           + N     +++   C+   
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKN-G 255

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  + D M+  G     IT+ 
Sbjct: 256 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  +  TY  ++   C+ G V     LL+ M  DG
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   GNL     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDNG 236


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 5/277 (1%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y  L+N      + + V  LL K            +N I N+     +L D C   + + 
Sbjct: 166 YGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMI 225

Query: 98  -KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR-GKR- 153
            KG  P    Y TLI   C + K+ EA  +++ M          TF  ++  L + GK+ 
Sbjct: 226 VKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKK 285

Query: 154 -MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
            ++EA  L E MK   + PD+  YN L+   C   +L     +LK+M+E  +  D  +Y 
Sbjct: 286 MVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYT 345

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
            L+ G C+ GR+E A    + ++  G  +    Y  ++  L + G + +A+       G+
Sbjct: 346 ILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGK 405

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               +   F ++   L   +  ++A  IL+EM  R L
Sbjct: 406 GCMPNAITFRTIICALSEKDENDKAEKILREMIARGL 442



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 127/315 (40%), Gaps = 30/315 (9%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           M L+R  P  FL      +  S  K+  +P   T           G   DL T+  L+N 
Sbjct: 49  MLLMRPPPPTFLFNN---ILSSLVKNKRYP---TVISLFKQFEPNGITPDLCTLSILIN- 101

Query: 61  RARDC-CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKK 118
               C C     T  F        SV +++      L +GF P     +TLI  LC   +
Sbjct: 102 ----CFCHQAHITLAF--------SVFANI------LKRGFHPDAITLNTLIKGLCFRGE 143

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           I + L   D +   GF L  +++  +++ L +    +    L+  ++   V PD+  YN 
Sbjct: 144 IKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNT 203

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           ++ + C    L     V  +M  + +  D  TY  L+ G C  G+++EAF LL  M    
Sbjct: 204 IINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKN 263

Query: 239 QSVLYSTYAHVMGALLRLG---YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
            +    T++ ++ AL + G      +A+        +++  D   + SL   L       
Sbjct: 264 INPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLE 323

Query: 296 EANFILKEMNKRDLK 310
            A  +LKEM +  ++
Sbjct: 324 RAIALLKEMKEHGIQ 338


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 120/296 (40%), Gaps = 53/296 (17%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L++ L  + +I ++  +    ++ G  P+  T   ++ LVN       +     L+   
Sbjct: 396 TLIKGLSNQGMILEAAQLANEMSEKGLIPEVQT---FNILVNGLCKMGCVSDADGLVKVM 452

Query: 62  ARDCCFNTANTFNFITN-------TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRL 113
                F    TFN + +        EN+L +L         LD G  P    Y++L+  L
Sbjct: 453 ISKGYFPDIFTFNILIHGYSTQLKMENALEILD------VMLDNGVDPDVYTYNSLLNGL 506

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           CK  K ++ +     M E G   +  TF+ +L  L R ++++EA GL+E MK   V+PD 
Sbjct: 507 CKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDA 566

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEE-------------------EK----------- 203
             +  L+  +C  G+L     + +KMEE                   EK           
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQ 626

Query: 204 ------LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
                 LG D  TY  +V G C+ G V   +  L  M+++G     +T   V+  L
Sbjct: 627 EMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCL 682



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 6/207 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD--- 88
           +P    Y+ L+    ++  +     L N+ +         TFN + N    +  +SD   
Sbjct: 388 KPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADG 447

Query: 89  LCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L + +  + KG FP    ++ LI       K++ AL ++D+M + G      T++ +L+ 
Sbjct: 448 LVKVM--ISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L +  + E+     + M E   +P+L  +N LL + C    L    G+L++M+ + +  D
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRM 234
           A T+  L+ G C+ G ++ A+ L R+M
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKM 592



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 20/264 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC- 90
           EP S  Y+ L+  AG+ +    +  L  +   D  FN      F+ +     S++  LC 
Sbjct: 318 EPDSYTYNTLI--AGYCKG--GMVQLAERIVGDAVFN-----GFVPDQFTYRSLIDGLCH 368

Query: 91  -----RTLA----RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
                R LA     L KG  P    Y+TLI  L     I EA ++ + M+E G      T
Sbjct: 369 EGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQT 428

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ +++ L +   + +A GL++VM      PD+  +N L+  Y  +  +     +L  M 
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVML 488

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           +  +  D  TY++L+ G C+  + E+     + MV+ G +    T+  ++ +L R     
Sbjct: 489 DNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLD 548

Query: 261 QAVKFVMVCGGRDIKLDTELFGSL 284
           +A+  +     + +  D   FG+L
Sbjct: 549 EALGLLEEMKNKSVNPDAVTFGTL 572



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 91/206 (44%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S ++ L+  LCK   + E  +++D + + G   +  T++  +  L +   ++ A  ++  
Sbjct: 217 STFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGC 276

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           + E    PD+  YN L+   C           L KM  E L  D+ TY+ L+ G C+ G 
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGM 336

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           V+ A  ++   V +G      TY  ++  L   G   +A+       G+ IK +  L+ +
Sbjct: 337 VQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNT 396

Query: 284 LGSKLIGLERFNEANFILKEMNKRDL 309
           L   L       EA  +  EM+++ L
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGL 422



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY T++G   +     E   +   M   G  L   TF+ +L VL +   ++E   L++ +
Sbjct: 183 AYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKV 242

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V P+L  YN  +   C +G L     ++  + E+    D  TY+ L+ G C+  + 
Sbjct: 243 IKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKF 302

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +EA V L +MV++G      TY  ++    + G    A + V
Sbjct: 303 QEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIV 344



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 3/149 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+  I  LC+  ++D A+R+V  + E G     IT++ ++  L +  + +EA  
Sbjct: 248 LPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEV 307

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +  M    + PD   YN L+  YC  G +     ++          D  TY +L+ G C
Sbjct: 308 YLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLC 367

Query: 220 RAGRVEEAFVLLRRMVDDG---QSVLYST 245
             G    A  L    +  G     +LY+T
Sbjct: 368 HEGETNRALALFNEALGKGIKPNVILYNT 396



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 1/167 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G  P   ++   +   CK  +   ALR+++ M+  G  ++ + +  ++          
Sbjct: 139 DRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKA 198

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           E + L   M    VS  L+ +N LL   C KG++     +L K+ +  +  +  TY+  +
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFI 258

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G C+ G ++ A  ++  +++ G      TY +++  L +   + +A
Sbjct: 259 QGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA 305



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 41/258 (15%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           + +     G FPD  T   ++ L++    +  +E    +L+    +       T+N + N
Sbjct: 448 LVKVMISKGYFPDIFT---FNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLN 504

Query: 79  TENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
                S   D+  T   + +KG  P    ++ L+  LC+ +K+DEAL +++ M       
Sbjct: 505 GLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNP 564

Query: 137 SAITFHPILSVLTRG----------KRMEEAWG--------------------------L 160
            A+TF  ++    +           ++MEEA+                           L
Sbjct: 565 DAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKL 624

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + PD   Y  ++  +C  GN+      L +M E        T   ++   C 
Sbjct: 625 FQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCV 684

Query: 221 AGRVEEAFVLLRRMVDDG 238
             RV EA  ++ RMV  G
Sbjct: 685 EDRVYEAAGIIHRMVQKG 702



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/140 (20%), Positives = 62/140 (44%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+ EA+ V + M       +  +++ I+SVL      ++A  +   M++  ++PD+ ++ 
Sbjct: 91  KVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
             + ++C      A   +L  M  +    +   Y  +V G        E + L  +M+  
Sbjct: 151 IRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLAS 210

Query: 238 GQSVLYSTYAHVMGALLRLG 257
           G S+  ST+  ++  L + G
Sbjct: 211 GVSLCLSTFNKLLRVLCKKG 230


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 102/227 (44%), Gaps = 5/227 (2%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           ++V V++   ++G FP+E T   Y  L++      DL     + NK   + C      + 
Sbjct: 366 EAVSVSQKMERNGVFPNETT---YSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYT 422

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            + +     S+ +     +  +  G   P    ++T I  LC   K + A++V++ M + 
Sbjct: 423 CMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQY 482

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   +  T++ +L  L   KR  EA  ++  ++E+ +  +L  YN +L+ +C  G     
Sbjct: 483 GCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGA 542

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
             +  K+       D+ TY+ ++   C+ G V+ A  L+ R+   G+
Sbjct: 543 LQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGE 589



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 110/261 (42%), Gaps = 39/261 (14%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           ++F + G F  +P+   Y+ +++A   E   + +  + N   RD       T+N +    
Sbjct: 129 KTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNML---- 184

Query: 81  NSLSVLSDLCRT---------LARLD-KG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
                L  LC+          LA +  KG  P   +Y T++  +C+L K++EA  +    
Sbjct: 185 -----LKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEAREL---- 235

Query: 130 AEGGFGLSAITFHPILSVLTRG----KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
                 +   +F P+ + L  G     +MEE + L   M    + PD+  Y+ ++     
Sbjct: 236 -----SMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSE 290

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVL 242
            GN+     VL KM       +  T+ +L+ G    GR+ EA  L  RM+ +G    +V 
Sbjct: 291 MGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVA 350

Query: 243 YSTYAHVMGALLRLGYYAQAV 263
           Y+T  H    L   G   +AV
Sbjct: 351 YNTLIH---GLCSYGKMVEAV 368



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 118/289 (40%), Gaps = 19/289 (6%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           +L KL  +  I  ++   +S   S +F   P +  Y  ++   G+ERD++ ++YLL    
Sbjct: 43  VLNKLKNEPNILLALHFFKSIANSNSFKHTPLT--YTTMIKRLGYERDIDGIQYLLQLMK 100

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKID 120
            +      + F  + N      +     +T  R+ +    P    Y+ ++  L    K  
Sbjct: 101 LEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQ 160

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
               + + M   G  L+  T++ +L  L +  R++ A  L+  M      PD  +Y  ++
Sbjct: 161 MINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVV 220

Query: 181 TAYCFKGNLTATSGVLKKMEEE-----KLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           ++ C  G          K+EE      ++ +    Y+AL+ G CR  ++EE F L   M 
Sbjct: 221 SSMCRLG----------KVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMA 270

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +G      TY+ V+  L  +G    A+  +     R    +   F SL
Sbjct: 271 VEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSL 319



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  L ++  ++ AL V+  M   G   +  TF  ++     G R+ EA  L
Sbjct: 276 PDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDL 335

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +    P+  AYN L+   C  G +     V +KME   +  +  TY  L+ G  +
Sbjct: 336 WNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAK 395

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           AG +  A  +  +M+ +G       Y  ++  L R   +  A+  +
Sbjct: 396 AGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLI 441



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 37/266 (13%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARD------CCFNTA-NTFNFITNTENSLSVLSDL- 89
           Y+ L+N    E  +E V  L N+ A +        ++T  NT + + N E +L+VL+ + 
Sbjct: 246 YNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMF 305

Query: 90  -------CRTLARLDKGF----------------------PRKSAYDTLIGRLCKLKKID 120
                    T   L KG+                      P   AY+TLI  LC   K+ 
Sbjct: 306 LRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMV 365

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA+ V   M   G   +  T+  ++    +   +  A  +   M      P++  Y  ++
Sbjct: 366 EAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMV 425

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
              C          +++ M       +  T++  + G C +G+ E A  +L +M   G +
Sbjct: 426 DVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCA 485

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFV 266
              +TY  V+  L       +A++ V
Sbjct: 486 PNVTTYNEVLDGLFNAKRTREALQIV 511



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 1/217 (0%)

Query: 51  LETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLI 110
           L T+  L N++        +   N + N  N L  L    +++A  +        Y T+I
Sbjct: 22  LNTINPLQNEQKDLNLLKESEVLNKLKNEPNILLAL-HFFKSIANSNSFKHTPLTYTTMI 80

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
            RL   + ID    ++ +M   G   +   F  +++   R    E+A      + E    
Sbjct: 81  KRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCK 140

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P +  YN++L A   +      +G+   M+ + +  +  TY+ L+   C+  RV+ A  L
Sbjct: 141 PSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKL 200

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           L  M   G      +Y  V+ ++ RLG   +A +  M
Sbjct: 201 LAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSM 237


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 13/287 (4%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +  + L+ R  TK G  P+   S  Y  L++A      ++    LL +     C    NT
Sbjct: 226 VDNACLLLRDMTKHGCVPN---SMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNT 282

Query: 73  FNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           FN +      L+ + +  + + R+  KGF P    Y  L+  LCK  +IDEA  ++  + 
Sbjct: 283 FNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP 342

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
               G + + F+ +++   R  R+ EA   + + M      PD+  ++ L+   C KG  
Sbjct: 343 ----GPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLF 398

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            +   ++  M+ +    +  TY  L+ G C+ G++EEA ++LR M+  G S+    Y  +
Sbjct: 399 GSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNAL 458

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
           + AL + G   +A+        +  K D   F SL   + GL R +E
Sbjct: 459 ISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSL---IFGLCRVDE 502



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++TLI    +  +I EAL++V+ M   G  L  IT++ ++  L +   +E+  GL E M
Sbjct: 524 TFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEM 583

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               ++P +   N L+  +C  G +      ++ M       D  TY++L+ G C+ GR+
Sbjct: 584 IRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRI 643

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +EA  L  ++  +G      TY  ++  L R G +  A
Sbjct: 644 QEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDA 681



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 151/371 (40%), Gaps = 64/371 (17%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +LL K+P   ++  + LV   F ++G   +E T+  YD ++N  G+  D+ T   L+N  
Sbjct: 336 ALLSKVPGPNVVHFNTLVN-GFVRNGRL-NEATAFVYDKMINN-GYVPDVFTFSTLVNGL 392

Query: 62  ARDCCFNTANTFNFITNTE--------NSLSVLSD-LCRT----------LARLDKGFPR 102
            +   F +A     + + +        N+ ++L D  C+              L KGF  
Sbjct: 393 CKKGLFGSA--LELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSL 450

Query: 103 KS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
            +  Y+ LI  LCK  KI EAL +   M+  G      TF+ ++  L R   ME+A  L 
Sbjct: 451 NTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALY 510

Query: 162 --------------------------EVMKEIRVSPDL---------TAYNYLLTAYCFK 186
                                     E+ + +++  D+           YN L+ A C  
Sbjct: 511 RDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKT 570

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G +    G+ ++M  + L     T + L+ G C AG+V  A   +R M+  G S    TY
Sbjct: 571 GAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTY 630

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             ++  L + G   +A+          I+ D+  + +L   L     F++A F+L     
Sbjct: 631 NSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLL----Y 686

Query: 307 RDLKMGFKLRD 317
           R ++ GF   D
Sbjct: 687 RGVENGFVPND 697



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 107/219 (48%), Gaps = 10/219 (4%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDLCRTLARLDKGF-PRKSAYD 107
           +  R LL+ +   CC  +  ++N + +     N  SV S++   +  L KG  P    + 
Sbjct: 157 QATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDM--LSKGVSPNDYTFG 214

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
            ++  LC + ++D A  ++  M + G   +++ +  ++  L++  R++EA  L+E M  +
Sbjct: 215 LVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLM 274

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
              PD+  +N ++  +C    +   + ++ +M  +    +  TY  L+ G C+  R++EA
Sbjct: 275 GCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEA 334

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             LL ++   G +V++  +  ++   +R G   +A  FV
Sbjct: 335 QALLSKV--PGPNVVH--FNTLVNGFVRNGRLNEATAFV 369



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 12/147 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI   C   K+  AL  +  M   GF    +T++ +++ L +  R++EA  L
Sbjct: 590 PSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNL 649

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E ++   + PD   YN L+   C +G       +L +  E     +  T++ LV    +
Sbjct: 650 FEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGK 709

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYA 247
               E            GQ++ Y+ ++
Sbjct: 710 QSNSE------------GQTITYAQFS 724


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 112/238 (47%), Gaps = 4/238 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLC 90
           EP    Y+ +++A   E D++  R LLN   +R C  NT N +N +     S+    D  
Sbjct: 13  EPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVN-YNTVLKGLCSIERWVDAE 71

Query: 91  RTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
             L  +  +   P ++  + ++  L +   + +  R ++ M++ G   + +T++ ++S +
Sbjct: 72  ELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGM 131

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                ++ A  L+  M+     PD+  YN LL   C          ++ KM +     D 
Sbjct: 132 CEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDN 191

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            T++ ++   C+ G + +AF + ++M + G +   +TY+ ++G L + G   QA++ +
Sbjct: 192 VTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELL 249



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 92/215 (42%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           L R +   P    Y+ +I  +C+   +D+A  +++ +   G   + + ++ +L  L   +
Sbjct: 6   LMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIE 65

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           R  +A  L++ M      P+    N ++     KG L   +  L+KM +    A+  TY+
Sbjct: 66  RWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYN 125

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           A++ G C  G V+ A  LL  M   G      TY  ++  L     +  A + ++     
Sbjct: 126 AVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQN 185

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           D   D   F ++ S L       +A  + K+M ++
Sbjct: 186 DCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEK 220



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 21/218 (9%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
           +F  +P    Y+ L+         E    L+ K +++ C     TFN         +++S
Sbjct: 149 SFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDNVTFN---------TIIS 199

Query: 88  DLCRTLARL----------DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
            LC+    L          +KG  P  + Y T+IG L K  K+++AL +++ MA  G+  
Sbjct: 200 FLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEMASKGYNT 259

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             + +  +   L +  ++EE   ++  +++  +SP    +N +L   C  G       VL
Sbjct: 260 DKM-YQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKTDYAIDVL 318

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             M       D  TY  L+ G    G ++EA  L+ R+
Sbjct: 319 ADMVSYGCMPDELTYIILIEGLSYEGYLQEARELVSRL 356



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 1/175 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    ++T+I  LC+   I +A  V   M E G   ++ T+  I+  L +  +ME+A  
Sbjct: 188 LPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALE 247

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M     + D   Y  L  +   +  +     V+ K+++  +      ++ ++L  C
Sbjct: 248 LLNEMASKGYNTD-KMYQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVLC 306

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           R G+ + A  +L  MV  G      TY  ++  L   GY  +A + V     RD+
Sbjct: 307 RNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQEARELVSRLCSRDV 361



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 104/232 (44%), Gaps = 24/232 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSV 85
           P  A  + +VN    +  L+ V   L K ++  C     T+N +        + +++L +
Sbjct: 84  PNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALEL 143

Query: 86  LSDL----CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           LS++    C+         P    Y+TL+  LC   + ++A  ++  M++       +TF
Sbjct: 144 LSNMQSFGCK---------PDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDNVTF 194

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + I+S L +   + +A+ + + M E   +P+ T Y+ ++      G +     +L +M  
Sbjct: 195 NTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEMAS 254

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVM 250
           +    D + Y  L     +  ++EE   ++ ++ D G   Q+VL++T   V+
Sbjct: 255 KGYNTD-KMYQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVL 305



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/186 (18%), Positives = 79/186 (42%)

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           + ++D+M   G   + +T++ I+  + R   +++A  L+  +      P+   YN +L  
Sbjct: 1   MELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKG 60

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
            C          +L +M  E    +  T + +V    R G +++    L +M   G +  
Sbjct: 61  LCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTAN 120

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
             TY  V+  +   G+   A++ +        K D   + +L   L   +++ +A  ++ 
Sbjct: 121 VVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMI 180

Query: 303 EMNKRD 308
           +M++ D
Sbjct: 181 KMSQND 186


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 7/204 (3%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P +  ++ LI  L K  ++ +A  ++  MA+ G  +S  T++P++    +   + EA  
Sbjct: 269 YPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALA 328

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L E M    VSP + ++N ++  +C +G ++     L  M ++ L  D  +Y+ L+ G C
Sbjct: 329 LWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFC 388

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R G + EAF+LL  +     S    TY  ++  L RLG    A+K       R I  D  
Sbjct: 389 RLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVV 448

Query: 280 LFG-------SLGSKLIGLERFNE 296
            +         LG+ L+  E F+E
Sbjct: 449 TYTVLVNGACKLGNMLMAKEFFDE 472



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 85/189 (44%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +AL V  +M E G   +  T++ +L    +G  ++ A  L+  M+E    P    +N L+
Sbjct: 220 KALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLI 279

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
                KG L    G++++M +  L     TY+ L+ G C+ G + EA  L   MV  G S
Sbjct: 280 NGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVS 339

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
              +++  +M    + G  + A + +     +++  D   + +L      L    EA  +
Sbjct: 340 PTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFIL 399

Query: 301 LKEMNKRDL 309
           L E+  R+L
Sbjct: 400 LDELRFRNL 408



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 35/193 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TLI   C+L  I EA  ++D +       + +T++ ++  L R   +E A  L
Sbjct: 375 PDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKL 434

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-----------------------GVLK 197
            E M    + PD+  Y  L+   C  GN+                           G LK
Sbjct: 435 KEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELK 494

Query: 198 --------KMEEEKL----GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
                   K++EE L      D  TY+  V G C+ G +EEA  LL++M+ DG    + T
Sbjct: 495 LGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVT 554

Query: 246 YAHVMGALLRLGY 258
           Y   M A +  G+
Sbjct: 555 YTSFMHAHMENGH 567



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 1/206 (0%)

Query: 96  LDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KGFP     Y+  +  LCKL  ++EA  ++  M   G     +T+   +        +
Sbjct: 509 LTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHL 568

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E   +   M     +P +  Y  L+ A+   G L        +M+E+ +  +  TY+ L
Sbjct: 569 REGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVL 628

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+  ++++A      M + G      TY  ++     +G + +A++      G+ I
Sbjct: 629 INGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRI 688

Query: 275 KLDTELFGSLGSKLIGLERFNEANFI 300
           + D+   G+L  KL    +     FI
Sbjct: 689 RPDSCTHGALLKKLDKDYKVQAVQFI 714



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 120/280 (42%), Gaps = 5/280 (1%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-FITNTENSLSV 85
           G +P E T   ++ L+N    + +L+  + L+ + A+     +  T+N  I        +
Sbjct: 267 GCYPSEVT---FNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLL 323

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +  L      + +G  P  ++++T++   CK  K+ +A + +  M +       I+++ +
Sbjct: 324 VEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTL 383

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    R   + EA+ L++ ++   +S ++  YN L+   C  G+L     + + M    +
Sbjct: 384 IYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGI 443

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY  LV GAC+ G +  A      M+  G +     Y   +   L+LG  A+A K
Sbjct: 444 HPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFK 503

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                  +    D   +    + L  L    EA  +L++M
Sbjct: 504 LQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKM 543



 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 77/198 (38%), Gaps = 11/198 (5%)

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLA----RLDKGF-PRKSAYDTLIGRLCK 115
           R R+  FN   T+N + +    L  L DL   L      +++G  P    Y  L+   CK
Sbjct: 404 RFRNLSFNIV-TYNTLID---GLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACK 459

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHP-ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           L  +  A    D M   G       +   I+  L  G    +A+ L E M      PD+ 
Sbjct: 460 LGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDT-AKAFKLQEEMLTKGFPPDVI 518

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            YN  +   C  GNL     +L+KM  +    D  TY + +      G + E   +   M
Sbjct: 519 TYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDM 578

Query: 235 VDDGQSVLYSTYAHVMGA 252
           +  GQ+    TY  ++ A
Sbjct: 579 LSRGQTPTVVTYTVLIHA 596


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P    Y +LI  LC   K D+A  ++  M + G  L+ I F+ I+    +  R+
Sbjct: 433 IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRV 492

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E+  L ++M  I V P++  Y+ L+  YC  G +   + +L  M    +  D  TY+ L
Sbjct: 493 IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G CR  R+++A  L + MV  G S    TY  ++  L  
Sbjct: 553 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 593



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 88/190 (46%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D   P    Y++L+  LCK  +  EA ++ D M + G      T+  +L        +
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGAL 352

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E   L+++M    + PD   +N L+ AY  +  +     V  KM +  L  +  TY A+
Sbjct: 353 VEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAV 412

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   C++G V++A +   +M+D+G +     Y  ++ +L     + +A + ++    R I
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472

Query: 275 KLDTELFGSL 284
            L+T  F S+
Sbjct: 473 CLNTIFFNSI 482



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 66/138 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y ++I  LCK + +D+A+ V+  M + G   + +T++ IL      ++ +EA G 
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF 288

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+   V PD+  YN L+   C  G  T    +   M +  L  D  TY  L+ G   
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G + E   LL  MV +G
Sbjct: 349 KGALVEMHALLDLMVRNG 366



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 12/216 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I    K    D+A      M +       +T+  I++ L +G+ M++A  +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V P+   YN +L  YC         G LKKM  + +  D  TY++L+   C+
Sbjct: 254 LTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCK 313

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM------GALLRLGYYAQAVKFVMVCGGRDI 274
            GR  EA  +   M   G     +TY  ++      GAL+ +     A+  +MV  G  I
Sbjct: 314 NGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEM----HALLDLMVRNG--I 367

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             D  +F  L       E+ +EA  +  +M +  L 
Sbjct: 368 HPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLN 403



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 103/238 (43%), Gaps = 13/238 (5%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           S+++ LC+  A +DK              P    Y++++   C  ++  EA+  +  M  
Sbjct: 236 SIIAALCKGQA-MDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRS 294

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T++ ++  L +  R  EA  + + M +  + PD+  Y  LL  Y  KG L  
Sbjct: 295 DGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVE 354

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +L  M    +  D   ++ L+    +  +V+EA ++  +M   G +    TY  V+G
Sbjct: 355 MHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIG 414

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            L + G    A+ +        +  +  ++ SL   L   +++++A  ++ EM  R +
Sbjct: 415 ILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 92/206 (44%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ D+M   G   + IT+  ++      
Sbjct: 465 LEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLA 524

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + + PD   YN L+  YC    +     + K+M    +  +  TY
Sbjct: 525 GKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G     R   A  L   +   G  +  STY  ++  L +     +A++       
Sbjct: 585 NIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 644

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D++L+T  F  +   L+ + R +EA
Sbjct: 645 TDLQLETRTFNIMIGALLKVGRNDEA 670



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI    K +K+DEA+ V   M + G   + +T+  ++ +L +   +++A   
Sbjct: 369 PDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLY 428

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  ++P++  Y  L+ + C          ++ +M +  +  +   +++++   C+
Sbjct: 429 FEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCK 488

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY+ ++      G   +A K +       +K D   
Sbjct: 489 EGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVT 548

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +    + R ++A  + KEM
Sbjct: 549 YNTLINGYCRVSRMDDALALFKEM 572



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 3/179 (1%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           L+  LC   +  EAL ++ +MA+   GG     +++  +++   +    ++A+     M 
Sbjct: 164 LLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + R+SPD+  Y+ ++ A C    +     VL  M +  +  +  TY++++ G C + + +
Sbjct: 224 DRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPK 283

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           EA   L++M  DG      TY  +M  L + G   +A K       R ++ D   + +L
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTL 342



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 10/194 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C   K+DEA +++  M   G     +T++ +++   R  RM++A  L
Sbjct: 509 PNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALAL 568

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-----GVLKKMEEEKLGADARTYDALV 215
            + M    VSP++  YN +L    F    TA +     G+ K   + +L     TY+ ++
Sbjct: 569 FKEMVSSGVSPNIITYNIILQGL-FHTRRTAAAKELYVGITKSGTQLELS----TYNIIL 623

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G C+    +EA  + + +      +   T+  ++GALL++G   +A           + 
Sbjct: 624 HGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLV 683

Query: 276 LDTELFGSLGSKLI 289
            D   +  +   LI
Sbjct: 684 PDVRTYSLMAENLI 697



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 98/249 (39%), Gaps = 39/249 (15%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL--------------- 145
           P    Y  LIG  C+  ++D     +  + + GF + AITF P+L               
Sbjct: 85  PTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 146 -----------------SVLTRG----KRMEEAWGLMEVMKEIR---VSPDLTAYNYLLT 181
                            ++L +G     R +EA  L+ +M + R    +PD+ +Y  ++ 
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVIN 204

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            +  +G+         +M + ++  D  TY +++   C+   +++A  +L  MV +G   
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMP 264

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
              TY  ++          +A+ F+       ++ D   + SL   L    R  EA  I 
Sbjct: 265 NCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIF 324

Query: 302 KEMNKRDLK 310
             M KR L+
Sbjct: 325 DSMTKRGLE 333



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 2/158 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   C++ ++D+AL +   M   G   + IT++ IL  L   +R   A  L
Sbjct: 544 PDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-GVLKKMEEEKLGADARTYDALVLGAC 219
              + +     +L+ YN +L   C K NLT  +  + + +    L  + RT++ ++    
Sbjct: 604 YVGITKSGTQLELSTYNIILHGLC-KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALL 662

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + GR +EA  L   +  +G      TY+ +   L+  G
Sbjct: 663 KVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQG 700



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK    DEALR+   +      L   TF+ ++  L +  R +EA  L   
Sbjct: 617 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAA 676

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +    + PD+  Y+ +      +G L     +   MEE    A++R  +++V    + G 
Sbjct: 677 LSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGD 736

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVM 250
           +  A   L  M+D+    L ++ A ++
Sbjct: 737 ITRAGTYL-SMIDEKHFSLEASTASLL 762


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 8/214 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+G  C   KI++ALR+   M   G   S  TF  +LS L R   + +A  L
Sbjct: 470 PTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKL 529

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V P+   YN ++  YC +G+++     LK+M E+ +  D  +Y  L+ G C 
Sbjct: 530 FNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCL 589

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+  EA V +  +      +    Y  ++    R G   +A+        R + LD   
Sbjct: 590 TGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVC 649

Query: 281 FGSL--GSKLIGLERFNEANF--ILKEMNKRDLK 310
           +G L  GS    L+  +   F  +LKEM+ R LK
Sbjct: 650 YGVLIDGS----LKHKDRKLFFGLLKEMHDRGLK 679



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK +K  EA  + D M + G   + +T+  ++ +  R  +++ A   
Sbjct: 365 PNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSF 424

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  +   +  YN L+  +C  G+++A  G + +M  +KL     TY +L+ G C 
Sbjct: 425 LGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCS 484

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G++ +A  L   M   G +    T+  ++  L R G    AVK 
Sbjct: 485 KGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKL 529



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P ++A  +L+  L K  KI+EAL +V  + + G   +   ++ ++  L +G++  EA  L
Sbjct: 330 PSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELL 389

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +I + P+   Y+ L+  +C +G L      L +M +  L      Y++L+ G C+
Sbjct: 390 FDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCK 449

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +  A   +  M++        TY  +MG     G   +A++      G+ I      
Sbjct: 450 FGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYT 509

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F +L S L       +A  +  EM + ++K
Sbjct: 510 FTTLLSGLFRAGLIRDAVKLFNEMAEWNVK 539



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 28/204 (13%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G  P    Y ++I    K     EA  + D+M   G   + +T+  +++ L +   + 
Sbjct: 675 DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE------EKLGADAR 209
           EA  L   M+ +   P+   Y       CF   LT     ++K  E      + L A+  
Sbjct: 735 EAEVLCSKMQPVSSVPNQVTYG------CFLDILTKGEVDMQKAVELHNAILKGLLANTA 788

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ L+ G CR GR+EEA  L+ RM+ DG S    TY  ++  L               C
Sbjct: 789 TYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINEL---------------C 833

Query: 270 GGRDIKLDTELFGSLGSKLIGLER 293
              D+K   EL+ S+  K I  +R
Sbjct: 834 RRNDVKKAIELWNSMTEKGIRPDR 857



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 1/167 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG  P   +Y  LI  LC   +  EA   VD + +G   L+ I +  +L    R  ++E
Sbjct: 570 EKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLE 629

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  + + M +  V  DL  Y  L+       +     G+LK+M +  L  D   Y +++
Sbjct: 630 EALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMI 689

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
               + G  +EAF +   M+++G      TY  V+  L + G+  +A
Sbjct: 690 DAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEA 736



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+  LCK+++ +  L ++D M    F  S      ++  L +  ++EEA  L
Sbjct: 295 PDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNL 354

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ + +  VSP+L  YN L+ + C          +  +M +  L  +  TY  L+   CR
Sbjct: 355 VKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCR 414

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G+++ A   L  MVD G  +    Y  ++    + G  + A  F+
Sbjct: 415 RGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFM 460



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 88/211 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C+  K+D AL  +  M + G  LS   ++ +++   +   +  A G 
Sbjct: 400 PNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGF 459

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M   ++ P +  Y  L+  YC KG +     +  +M  + +     T+  L+ G  R
Sbjct: 460 MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFR 519

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG + +A  L   M +        TY  ++      G  ++A +F+     + I  DT  
Sbjct: 520 AGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYS 579

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           +  L   L    + +EA   +  ++K + ++
Sbjct: 580 YRPLIHGLCLTGQASEAKVFVDGLHKGNCEL 610



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  L+   C+  K++EAL V   M + G  L  + +  ++    + K  +  +GL++ M
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEM 673

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  + PD   Y  ++ A    G+     G+   M  E    +  TY A++ G C+AG V
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFV 733

Query: 225 EEAFVLLRRM 234
            EA VL  +M
Sbjct: 734 NEAEVLCSKM 743



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 89/205 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI  LCK +K+ EA+ +   +A        +T+  ++  L + +  E    +M+ M 
Sbjct: 265 YNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEML 324

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            +R SP   A + L+     +G +     ++K++ +  +  +   Y+AL+   C+  +  
Sbjct: 325 CLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFH 384

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA +L  RM   G      TY+ ++    R G    A+ F+       +KL    + SL 
Sbjct: 385 EAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLI 444

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
           +        + A   + EM  + L+
Sbjct: 445 NGHCKFGDISAAEGFMAEMINKKLE 469



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 6/211 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD--- 88
           +P    Y  +++A     D +    + +    + C     T+  + N       +++   
Sbjct: 679 KPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEV 738

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLK-KIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           LC  +  +    P +  Y   +  L K +  + +A+ + + + +G    +A T++ ++  
Sbjct: 739 LCSKMQPVSS-VPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTA-TYNMLIRG 796

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             R  R+EEA  L+  M    VSPD   Y  ++   C + ++     +   M E+ +  D
Sbjct: 797 FCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPD 856

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
              Y+ L+ G C AG + +A  L   M+  G
Sbjct: 857 RVAYNTLIHGCCVAGEMGKATELRNEMLRQG 887



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+ LI   C+  +I+EA  ++  M   G     IT+  +++ L R   +++A  L   
Sbjct: 788 ATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNS 847

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           M E  + PD  AYN L+   C  G +   + +  +M  + L  + +T
Sbjct: 848 MTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 67/162 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+ +I   C+   + +A   +  M E G      ++ P++  L    +  EA   
Sbjct: 540 PNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVF 599

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ + +     +   Y  LL  +C +G L     V ++M +  +  D   Y  L+ G+ +
Sbjct: 600 VDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLK 659

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
               +  F LL+ M D G       Y  ++ A  + G + +A
Sbjct: 660 HKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEA 701



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/211 (19%), Positives = 80/211 (37%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P       L+  L K +    A+ + + M   G       +  ++  L   K +  A  
Sbjct: 189 LPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKE 248

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M+      ++  YN L+   C K  +    G+ K +  + L  D  TY  LV G C
Sbjct: 249 MIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLC 308

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +    E    ++  M+    S   +  + ++  L + G   +A+  V       +  +  
Sbjct: 309 KVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLF 368

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           ++ +L   L    +F+EA  +   M K  L+
Sbjct: 369 VYNALIDSLCKGRKFHEAELLFDRMGKIGLR 399


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 45/251 (17%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           GF     +D LI   C + + DEA      M E G   +  T + +LS+  +  R E AW
Sbjct: 147 GFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAW 206

Query: 159 GLMEVMKEIR-----------------------------------VSPDLTAYNYLLTAY 183
            L   M  +R                                   V P++  YN ++  Y
Sbjct: 207 VLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGY 266

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QS 240
           C  G + A   +L  M+ +K+  D+ TY +L+ G C+ GR+EEA  +   MV  G    +
Sbjct: 267 CSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSA 326

Query: 241 VLYSTYAHVMGALLRLGY--YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
           V+Y+T   ++      G    A A K  M+  G    + T  + SL   L   +R +EA 
Sbjct: 327 VIYNT---LIDGFCNKGNLDMASAYKDEMLKKGISPTMST--YNSLIHALFMEQRTDEAE 381

Query: 299 FILKEMNKRDL 309
            ++KE+ ++ +
Sbjct: 382 CMIKEIQEKGI 392



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG  P    Y+ LI   C+     +A  + D M   G   +  T+  +L VL++  RM+
Sbjct: 389 EKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMK 448

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L + +    V PD   +N L+  +C   N+     +LK M+  K+  D  T++ ++
Sbjct: 449 EADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIM 508

Query: 216 LGACRAGRVEEAFVLLRRM 234
            G CR G+VEEA  L   M
Sbjct: 509 QGHCREGKVEEARELFDEM 527



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 90/198 (45%)

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           +D   T  +  K  P    Y +LI  +CK  +++EA ++ + M + G   SA+ ++ ++ 
Sbjct: 275 ADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID 334

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                  ++ A    + M +  +SP ++ YN L+ A   +        ++K+++E+ +  
Sbjct: 335 GFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISP 394

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           DA TY+ L+ G CR    ++AF+L   M+  G      TY  ++  L +     +A    
Sbjct: 395 DAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLF 454

Query: 267 MVCGGRDIKLDTELFGSL 284
                  +  D  +F +L
Sbjct: 455 KKITSEGVLPDAIMFNAL 472



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 100/235 (42%), Gaps = 22/235 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT + Y+ L++A   E+  +    ++ +         A T+N + N           CR 
Sbjct: 359 PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILIN---------GYCRC 409

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            A   K F            P K  Y +L+  L K  ++ EA  +   +   G    AI 
Sbjct: 410 -ANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIM 468

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ ++        ++ A+ L++ M  ++V PD   +N ++  +C +G +     +  +M+
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMK 528

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              +  D  +++ L+ G  R G +++AF +   M+D G +    TY  ++  L +
Sbjct: 529 RRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCK 583



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 66/147 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    ++ LI   C    +  A  ++  M         +TF+ I+    R  ++EEA  
Sbjct: 463 LPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARE 522

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + MK   + PD  ++N L++ Y  +G++     V  +M +        TY+ALV G C
Sbjct: 523 LFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLC 582

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +    + A  LL+ MV  G +   +TY
Sbjct: 583 KNQEGDLAEELLKEMVSKGMTPDDTTY 609



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 12/202 (5%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI-------TNTENSLS 84
           +PT   Y  L++    +  ++    L  K   +     A  FN +       +N + +  
Sbjct: 428 KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFE 487

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +L D+ R      K  P +  ++T++   C+  K++EA  + D M   G     I+F+ +
Sbjct: 488 LLKDMDRM-----KVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTL 542

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +S  +R   +++A+ +   M +   +P +  YN L+   C          +LK+M  + +
Sbjct: 543 ISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGM 602

Query: 205 GADARTYDALVLGACRAGRVEE 226
             D  TY  L+ G  +    +E
Sbjct: 603 TPDDTTYFTLIEGIAKVNIPDE 624


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 45/251 (17%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           GF     +D LI   C + + DEA      M E G   +  T + +LS+  +  R E AW
Sbjct: 147 GFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAW 206

Query: 159 GLMEVMKEIR-----------------------------------VSPDLTAYNYLLTAY 183
            L   M  +R                                   V P++  YN ++  Y
Sbjct: 207 VLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGY 266

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QS 240
           C  G + A   +L  M+ +K+  D+ TY +L+ G C+ GR+EEA  +   MV  G    +
Sbjct: 267 CSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSA 326

Query: 241 VLYSTYAHVMGALLRLGY--YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
           V+Y+T   ++      G    A A K  M+  G    + T  + SL   L   +R +EA 
Sbjct: 327 VIYNT---LIDGFCNKGNLDMASAYKDEMLKKGISPTMST--YNSLIHALFMEQRTDEAE 381

Query: 299 FILKEMNKRDL 309
            ++KE+ ++ +
Sbjct: 382 CMIKEIQEKGI 392



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG  P    Y+ LI   C+     +A  + D M   G   +  T+  +L VL++  RM+
Sbjct: 389 EKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMK 448

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L + +    V PD+  +N L+  +C   N+     +LK M+  K+  D  T++ ++
Sbjct: 449 EADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIM 508

Query: 216 LGACRAGRVEEAFVLLRRM 234
            G CR G+VEEA  L   M
Sbjct: 509 QGHCREGKVEEARELFDEM 527



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 90/198 (45%)

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           +D   T  +  K  P    Y +LI  +CK  +++EA ++ + M + G   SA+ ++ ++ 
Sbjct: 275 ADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID 334

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                  ++ A    + M +  +SP ++ YN L+ A   +        ++K+++E+ +  
Sbjct: 335 GFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISP 394

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           DA TY+ L+ G CR    ++AF+L   M+  G      TY  ++  L +     +A    
Sbjct: 395 DAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLF 454

Query: 267 MVCGGRDIKLDTELFGSL 284
                  +  D  +F +L
Sbjct: 455 KKITSEGVLPDVIMFNAL 472



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 99/235 (42%), Gaps = 22/235 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT + Y+ L++A   E+  +    ++ +         A T+N + N           CR 
Sbjct: 359 PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILIN---------GYCRC 409

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            A   K F            P K  Y +L+  L K  ++ EA  +   +   G     I 
Sbjct: 410 -ANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIM 468

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ ++        ++ A+ L++ M  ++V PD   +N ++  +C +G +     +  +M+
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMK 528

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              +  D  +++ L+ G  R G +++AF +   M+D G +    TY  ++  L +
Sbjct: 529 RRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCK 583



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 66/147 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    ++ LI   C    +  A  ++  M         +TF+ I+    R  ++EEA  
Sbjct: 463 LPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARE 522

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + MK   + PD  ++N L++ Y  +G++     V  +M +        TY+ALV G C
Sbjct: 523 LFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLC 582

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +    + A  LL+ MV  G +   +TY
Sbjct: 583 KNQEGDLAEELLKEMVSKGMTPDDTTY 609



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 85/202 (42%), Gaps = 12/202 (5%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI-------TNTENSLS 84
           +PT   Y  L++    +  ++    L  K   +        FN +       +N + +  
Sbjct: 428 KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFE 487

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +L D+ R      K  P +  ++T++   C+  K++EA  + D M   G     I+F+ +
Sbjct: 488 LLKDMDRM-----KVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTL 542

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +S  +R   +++A+ +   M +   +P +  YN L+   C          +LK+M  + +
Sbjct: 543 ISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGM 602

Query: 205 GADARTYDALVLGACRAGRVEE 226
             D  TY  L+ G  +    +E
Sbjct: 603 TPDDTTYFTLIEGIAKVNIPDE 624


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 27/235 (11%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+DEA ++ D M + G   + +T
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  +++ A  + + M     SPD   YN L+   C KG+L     +  +M 
Sbjct: 244 FTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E AF   +RM+ +   +   +Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSV 363

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
            A K +       +K DT      G+  I +  F +           D+KMG KL
Sbjct: 364 DAEKMLREMLSVGLKPDT------GTYTIVMHEFCKNG---------DVKMGSKL 403



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 92/210 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+   M   G      T+  +++ L +  +M+EA  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G L     + K+M  +    D  TY+ L+ G C+
Sbjct: 229 FDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + +A  L   M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVS 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCKEGRSVDAEKMLREMLSVGLK 378



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 7/217 (3%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           SG  PD  T   Y  L+N    E  ++    L ++           TF  + +       
Sbjct: 200 SGVQPDVYT---YSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGK 256

Query: 86  LSDLCRTLAR--LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           L DL   + +  L +GF P    Y+TLI  LCK   + +A  + D M+  G     IT+ 
Sbjct: 257 L-DLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  +Y  L++  C +G       +L++M   
Sbjct: 316 TLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
            L  D  TY  ++   C+ G V+    LL+ M  DG 
Sbjct: 376 GLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGH 412


>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
 gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 4/217 (1%)

Query: 51  LETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLI 110
           L   R  LN R   C FN     +        L    ++ + +      +P    Y TLI
Sbjct: 177 LVNARSKLNLRPNTCIFNILVKHHC---RNGDLQAAFEVVKEMKSARVSYPNLVTYSTLI 233

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           G LC+  K+ EA+   + M      L  A+T++ +++   +  +++ A  ++E MK    
Sbjct: 234 GGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGC 293

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           SP++  Y+ L+  YC +G L     V  +++   +  D  +Y  L+   CR GRV+EA  
Sbjct: 294 SPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATE 353

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           LL++M D        T+  ++G L R G + +A+  V
Sbjct: 354 LLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMV 390



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 85/170 (50%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y+ LI   C+  K+D A  +++ M   G   +   +  +++   +  R++E
Sbjct: 256 DNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQE 315

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  +   +K + + PD  +Y  L+   C  G +   + +L++M+++   AD  T++ ++ 
Sbjct: 316 AKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLG 375

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G CR GR +EA  +++++  +G  +   +Y  V+  L + G   +A + +
Sbjct: 376 GLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELL 425



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 2/199 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL-SAITFHPILSVLTRGKRMEEAWG 159
           P    ++ L+   C+   +  A  VV  M        + +T+  ++  L    +++EA  
Sbjct: 188 PNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIE 247

Query: 160 LMEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
             E M  +  + PD   YN L+  +C +G +     +L+ M+      +   Y  L+ G 
Sbjct: 248 FFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGY 307

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+ GR++EA  +   +   G      +Y  ++  L R G   +A + +     +D + DT
Sbjct: 308 CKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADT 367

Query: 279 ELFGSLGSKLIGLERFNEA 297
             F  +   L    RF+EA
Sbjct: 368 VTFNVMLGGLCREGRFDEA 386



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 3/213 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRV-VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P   A  T +  L +  ++D A ++ V+  ++     +   F+ ++    R   ++ A+ 
Sbjct: 152 PSLKAISTCLNLLVESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFE 211

Query: 160 LMEVMKEIRVS-PDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLG 217
           +++ MK  RVS P+L  Y+ L+   C  G L       ++M  ++ +  DA TY+ L+ G
Sbjct: 212 VVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILING 271

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+ G+V+ A  +L  M  +G S     Y+ +M    + G   +A +         +K D
Sbjct: 272 FCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPD 331

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           T  + +L + L    R +EA  +L++M  +D +
Sbjct: 332 TISYTTLINCLCRTGRVDEATELLQQMKDKDCR 364



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 63/138 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   CK  ++ EA  V + +   G     I++  +++ L R  R++EA  L
Sbjct: 295 PNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATEL 354

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MK+     D   +N +L   C +G       +++K+  E    +  +Y  ++    +
Sbjct: 355 LQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQ 414

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G + +A  LL  M++ G
Sbjct: 415 KGELRKATELLGLMLNRG 432



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 13/181 (7%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLC 114
           FN   +     +T +  ++++ LCRT  R+D+                   ++ ++G LC
Sbjct: 320 FNEIKSLGMKPDTISYTTLINCLCRT-GRVDEATELLQQMKDKDCRADTVTFNVMLGGLC 378

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           +  + DEAL +V  +   GF L+  ++  +L+ LT+   + +A  L+ +M      P   
Sbjct: 379 REGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFVPHHA 438

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             N LL   C  G +      L  + E     +  ++  LV   CR  ++   F LL  +
Sbjct: 439 TSNTLLLLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTLVDLICRERKMLPVFELLDVL 498

Query: 235 V 235
           V
Sbjct: 499 V 499


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  LCKL KI +A  ++D M E G   S +++  ++  L +   ++EA  L
Sbjct: 189 PDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIEL 248

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    + P++  Y+ L+   C  G+ +    +L+ M   +L  +  TY  L+ G C+
Sbjct: 249 LEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCK 308

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGG 271
            G+  EA  +L RM   G       Y  ++  L     Y +A  F+  M  GG
Sbjct: 309 EGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGG 361



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 1/211 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR-MEEAWG 159
           P + +Y T+   L +   +  A+     M E G   + ++ + ++  L + +  +E A+ 
Sbjct: 118 PTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFR 177

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M      PD   Y  L+   C  G ++    +L +MEE+ L     +Y +L+ G C
Sbjct: 178 LFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLC 237

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           ++  ++EA  LL  M+ +G      TY+ +M  L + G+ +QA++ + V   R +  +  
Sbjct: 238 QSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMV 297

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            + +L + L    +  EA  IL  M  + LK
Sbjct: 298 TYSTLINGLCKEGKHREAVEILDRMRLQGLK 328



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 33  PTSAYYDDLVNA-AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           PT    + L+ A   +E  +E+   L  +     C   + T+  + N    L  +S    
Sbjct: 153 PTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKE 212

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  ++ KG  P   +Y +LI  LC+   +DEA+ +++ M   G   +  T+  ++  L 
Sbjct: 213 LLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLC 272

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +     +A  L+EVM   R+ P++  Y+ L+   C +G       +L +M  + L  DA 
Sbjct: 273 KSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAG 332

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA-HV 249
            Y  ++ G C A   +EA   +  M   G S   +++  HV
Sbjct: 333 MYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHV 373



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y TLI  LCK  K  EA+ ++D M   G    A  +  I+S L      +EA  
Sbjct: 293 LPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAAN 352

Query: 160 LMEVMKEIRVSPDLTAY-------NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
            ++ M    +SP+  ++       N ++   C   + T    +   M    +  +  T+D
Sbjct: 353 FIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFD 412

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDG 238
            LV   C+ G + +A  +L  M+ DG
Sbjct: 413 CLVKCFCKRGDLNKAARILEEMILDG 438



 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHP-----ILSV 147
           RL    P    Y  +I  LC      EA   +D MA GG     ++ TFH      ++  
Sbjct: 323 RLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQG 382

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L        A+ L   M+   +S ++  ++ L+  +C +G+L   + +L++M  +    D
Sbjct: 383 LCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGCIPD 442

Query: 208 ARTYDALVLGACRAGRVEEAFVLL 231
              ++ L+ G     +V E   LL
Sbjct: 443 EGMWNVLMCGLWDRKKVRETTELL 466


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHE-RDLETVRYLLNKRARDCCFNTANTF 73
           Q++ +       G  PD  T   Y+ +VN    E R  + + +L N  +  C  NT  ++
Sbjct: 211 QAMKLLDEMRDKGCTPDIVT---YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTV-SY 266

Query: 74  NFITNTENSLSVLSDLCRTLARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAE 131
           N +     +     D    +  +  KG P     ++ LI  LC+   ++ AL V++ + +
Sbjct: 267 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 326

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G   ++++++P+L    + K+M++A   +++M      PD+ +YN LLTA C  G +  
Sbjct: 327 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 386

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +L +++++       +Y+ ++ G  +AG+ +EA  LL  MV  G      TY+ +  
Sbjct: 387 AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA 446

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            L R      A++         I+ +T L+ ++   ++GL +  E +
Sbjct: 447 GLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI---ILGLCKRRETH 490



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 108/269 (40%), Gaps = 39/269 (14%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN------------- 78
           EP +  Y+ ++         E    L+ +  +  C     TFN + +             
Sbjct: 260 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALE 319

Query: 79  ----------TENSLS---VLSDLCRTLARLDKG------------FPRKSAYDTLIGRL 113
                     T NSLS   +L   C+   ++DK             +P   +Y+TL+  L
Sbjct: 320 VLEQIPKYGCTPNSLSYNPLLHAFCKQ-KKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 378

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           C+  ++D A+ ++  + + G     I+++ ++  LT+  + +EA  L+  M    + PD+
Sbjct: 379 CRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDI 438

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
             Y+ +    C +  +        K+++  +  +   Y+A++LG C+      A  L   
Sbjct: 439 ITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAY 498

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           M+ +G     STY  ++  L   G   +A
Sbjct: 499 MIGNGCMPNESTYTILIEGLAYEGLIKEA 527



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ ++   C   ++D A R+V   AE      A T++ ++  L    R   A  +
Sbjct: 124 PDVMAYNAMVAGYCGAGQLDAARRLV---AEMPVEPDAYTYNTLIRGLCGRGRTANALAV 180

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M   R  PD+  Y  LL A C +        +L +M ++    D  TY+ +V G C+
Sbjct: 181 LDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 240

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            GRV++A   L+ +   G      +Y  V+  L
Sbjct: 241 EGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 273



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LC   +   AL V+D M         +T+  +L    +    ++A  L
Sbjct: 156 PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 215

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++   +PD+  YN ++   C +G +      LK +       +  +Y+ ++ G C 
Sbjct: 216 LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 275

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           A R E+A  L+  M   G      T+  ++  L R G    A++ +
Sbjct: 276 AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 321



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 87/188 (46%), Gaps = 5/188 (2%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           T N+L+VL ++ R      +  P    Y  L+   CK     +A++++D M + G     
Sbjct: 174 TANALAVLDEMLRR-----RCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDI 228

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T++ +++ + +  R+++A   ++ +      P+  +YN +L   C          ++ +
Sbjct: 229 VTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGE 288

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M ++    +  T++ L+   CR G VE A  +L ++   G +    +Y  ++ A  +   
Sbjct: 289 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKK 348

Query: 259 YAQAVKFV 266
             +A+ F+
Sbjct: 349 MDKAMAFL 356



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 8/207 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P       LI +L    +  EA RV+        G   + ++ +++      +++ A  L
Sbjct: 94  PDAGTCAALIKKLSASGRTAEARRVL-----AACGPDVMAYNAMVAGYCGAGQLDAARRL 148

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +    E+ V PD   YN L+   C +G       VL +M   +   D  TY  L+   C+
Sbjct: 149 V---AEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCK 205

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
               ++A  LL  M D G +    TY  V+  + + G    A++F+        + +T  
Sbjct: 206 RSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVS 265

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           +  +   L   ER+ +A  ++ EM ++
Sbjct: 266 YNIVLKGLCTAERWEDAEELMGEMGQK 292


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 5/184 (2%)

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           +L++LS++C    +     P    Y++LI  LCK+ +IDEA R+   M   G   + +T+
Sbjct: 479 ALNLLSEMCTKGCK-----PDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTY 533

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + ++  L R    ++A  L+  M     + D   YN L+ A+C  GN+     + ++M  
Sbjct: 534 NTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIM 593

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           + LGAD  + + ++ G C+ G+V+ AF  LR  ++ G      TY  V+  L ++G   +
Sbjct: 594 DGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKE 653

Query: 262 AVKF 265
           A+  
Sbjct: 654 ALNL 657



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 10/280 (3%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R  TK G  P+   S  Y  L++A   +  +     LL +     C     TFN + +  
Sbjct: 242 RDMTKHGCVPN---SIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGL 298

Query: 81  NSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRV-VDIMAEGGFGLS 137
             ++ + D  + + R L +GF P    Y  L+  LC++ K++EA ++ + I       L+
Sbjct: 299 CKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILN 358

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            +    ++S    G+  E    L E M      PD+  YN L+   C +G+L+    ++ 
Sbjct: 359 TLINGYVMS----GQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVN 414

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M       +  TY  LV G C+AG +EEA ++L  M   G ++    Y  ++ AL R  
Sbjct: 415 EMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKE 474

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
               A+  +     +  K D   + SL   L  ++R +EA
Sbjct: 475 KVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEA 514



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 1/172 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++ GF P    Y+ L+  LCK   +  A  +V+ M+  G   + IT+  +++ L +   +
Sbjct: 382 INFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLL 441

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           EEA  ++  M    ++ +   YN L+ A C K  +     +L +M  +    D  TY++L
Sbjct: 442 EEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSL 501

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+  R++EAF L   M+ DG      TY  ++ ALLR G + +A+  V
Sbjct: 502 IYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLV 553



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 5/159 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + +L++++D+      LDK       Y+ LI   CK+  I++ L + + M   G G   I
Sbjct: 547 QKALTLVNDMLFRGCTLDK-----ITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTI 601

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           + + +++ L +  +++ A+  +         PD+  YN +L   C  G +     +  ++
Sbjct: 602 SCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRL 661

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           + E +  DA TY+  +   C+ G V +A +   R +++G
Sbjct: 662 QVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENG 700



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 7/212 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ +I  LCK+ KI +A ++VD M   GF    +T+  +L  L R  ++ EA  +
Sbjct: 286 PDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI 345

Query: 161 MEVMKEIRVS-PDLTAYNYLLTAYCFKGNLTATSGVLKK-MEEEKLGADARTYDALVLGA 218
           +     I++  P+    N L+  Y   G L      L + M       D  TY+ L+ G 
Sbjct: 346 L-----IKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGL 400

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+ G +  A  L+  M   G      TYA ++  L + G   +A   +     R + +++
Sbjct: 401 CKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINS 460

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            ++  L   L   E+ + A  +L EM  +  K
Sbjct: 461 VIYNCLICALCRKEKVHVALNLLSEMCTKGCK 492



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 7/209 (3%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYD 107
           + +R LL+ RA   C  T  +++ +     T N   V +++   +  L KG  P    + 
Sbjct: 165 QAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDM--LSKGVSPTVFTFG 222

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
            ++  LC   ++D A  ++  M + G   ++I +  ++  L++  ++ EA  L+E M  +
Sbjct: 223 IVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVM 282

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
              PD+  +N ++   C    +   + ++ +M       D  TY  L+ G CR G++ EA
Sbjct: 283 GCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEA 342

Query: 228 FVLLRRMVDDGQSVLYSTY-AHVMGALLR 255
             +L ++     ++L +    +VM   L+
Sbjct: 343 RKILIKIPCPNNAILNTLINGYVMSGQLK 371



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +YD ++  L        A  V   M   G   +  TF  ++  L     ++ A  L
Sbjct: 181 PTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSL 240

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +    P+   Y  L+ A   K  ++    +L++M       D +T++ ++ G C+
Sbjct: 241 LRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCK 300

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             ++ +A  L+ RM+  G      TY  ++  L R+G   +A K ++
Sbjct: 301 VNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILI 347


>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 554

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 4/217 (1%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALR-VVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           + KGF P   A   ++  LC  +K+D A   ++D+M  G   LS + ++ ++S   R  R
Sbjct: 176 IHKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGR 235

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +++A  +   M+     PDL  YN  L  +C +  L     +LK ME   +  D  +Y+ 
Sbjct: 236 IDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQ 295

Query: 214 LVLGACRAGRVEEAFVLL-RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           L+ G C+    ++A++L+  +M   G   + S Y  ++ A  ++G    A K     G +
Sbjct: 296 LLKGICKGNCPDKAYLLMTNKMWPKGLCDVVS-YNTIIKAFCKIGDTTSAYKLFEEMGQK 354

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            I  D   F       +G   FN A  +L +M +  L
Sbjct: 355 GIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGL 391



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 69/157 (43%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           KG     +Y+T+I   CK+     A ++ + M + G     +TF   +           A
Sbjct: 320 KGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIA 379

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L++ M E+ +SPD   Y  ++   C  G +     +   M E+ +  D  +++AL+ G
Sbjct: 380 KKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALING 439

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
            C+  RV EA  L   M + G      TY  ++G L+
Sbjct: 440 FCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLI 476



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 13/236 (5%)

Query: 84  SVLSDLCRTLARLDKGFPRKS------------AYDTLIGRLCKLKKIDEALRVVDIMAE 131
           +++S  CR   R+DK    KS             Y+  +   C    +D+A +++ +M  
Sbjct: 225 ALISGFCRA-GRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMER 283

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G      +++ +L  + +G   ++A+ LM      +   D+ +YN ++ A+C  G+ T+
Sbjct: 284 SGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTS 343

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              + ++M ++ +  D  T+   +      G    A  LL +M + G S     Y  ++ 
Sbjct: 344 AYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIID 403

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            L + G    A         + I  D   F +L +      R +EA  + +EM  R
Sbjct: 404 HLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNR 459



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 15/175 (8%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+  IG L    + D A      M   GF LS+ T+   ++ L + K       L+  M+
Sbjct: 47  YNRFIGVLINHSRFDLANHYYSQMGTRGFSLSSFTYSRFITGLCKVKNFTFIDELLHDME 106

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            +   PD+ A+N  L     +G +     V +K+ +     D  TY  ++ G C+  + +
Sbjct: 107 TLNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFD 166

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            A    R M+  G    +S      GA++           V +C GR + L  EL
Sbjct: 167 TAIQFWRDMIHKG----FSPDNKACGAIV-----------VGLCDGRKVDLAYEL 206



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%)

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A +++D M E G     I +  I+  L +  ++E A  +   M E  +SPD+ ++N L+ 
Sbjct: 379 AKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALIN 438

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            +C    ++    + ++M+      D  TY  ++ G     ++  A ++  +M+D G
Sbjct: 439 GFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMMDKG 495



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 49/117 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK  K++ A  +   M E G     I+F+ +++   +  R+ EA  L
Sbjct: 393 PDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHL 452

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            E M+     PD   Y  ++     +  ++    V  +M ++    D      L+ G
Sbjct: 453 YEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMMDKGFTLDRAIAQTLIRG 509


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 130/313 (41%), Gaps = 41/313 (13%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R+L     IPQ+  V ++ T  G  PD  T +   D ++ AG  R    VR   +  
Sbjct: 96  ALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAG--RIGAAVRIFKSME 153

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDE 121
           AR                             LA      P +  Y  LI  LCK +K+D 
Sbjct: 154 ARG----------------------------LA------PNEVVYSALIHGLCKARKMDC 179

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           AL ++  M +       IT++ ++  L +   +E A    + M E    PD+  YN L++
Sbjct: 180 ALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 239

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGA---DARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            +C  GN  A S  L   +E  +     D  TY A+V    +  ++EEA  L+ ++  +G
Sbjct: 240 GFCKAGNTDAASHSLA--QETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANG 297

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            +   +TY  ++  L ++G   +A+  +          D   + SL   L   +R  EA 
Sbjct: 298 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 357

Query: 299 FILKEMNKRDLKM 311
            + KEM  R L +
Sbjct: 358 KLFKEMALRGLAL 370



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 36/237 (15%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R+L     IPQ+  V ++ T  G  PD  T +   D ++ AG  R    VR   +  
Sbjct: 377 ALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAG--RIGAAVRIFKSME 434

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDE 121
           AR                             LA      P +  Y  LI  LCK +K+D 
Sbjct: 435 ARG----------------------------LA------PNEVVYSALIHGLCKARKMDC 460

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           AL ++  M +       IT++ ++  L +   +E A    + M E    PD+  YN L++
Sbjct: 461 ALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 520

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            +C  GN  A  GV   M   +  A+  TY AL+ G C+  ++ +A +  + M + G
Sbjct: 521 GFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 102/257 (39%), Gaps = 7/257 (2%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHE-RDLETVRYLLNK 60
           +LL  L     + +++ + R    +G  PD  T   Y  L++  G E R  E  +     
Sbjct: 307 ALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT---YTSLIDGLGKEKRSFEAYKLFKEM 363

Query: 61  RARDCCFNTANTFNFITN--TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKK 118
             R    +T      I        +   S + +T+       P      T+I  L K  +
Sbjct: 364 ALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTS-HGCVPDVVTLSTMIDGLSKAGR 422

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           I  A+R+   M   G   + + +  ++  L + ++M+ A  ++  MK+   +PD   YN 
Sbjct: 423 IGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 482

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+   C  G++ A      +M E     D  TY+ L+ G C+AG  + A  +   M    
Sbjct: 483 LIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSR 542

Query: 239 QSVLYSTYAHVMGALLR 255
            S    TY  ++  L +
Sbjct: 543 CSANVVTYGALISGLCK 559



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 112/273 (41%), Gaps = 28/273 (10%)

Query: 1   MSLLRKLPTKFLIPQSV---LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYL 57
           + +L ++   F  P ++   ++     KSG    E   A++D+++ A G + D+ T   L
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDV--EAARAFFDEMLEA-GCKPDVYTYNIL 237

Query: 58  L-------NKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF---------- 100
           +       N  A         T N  T   ++ + + D      ++++            
Sbjct: 238 ISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANG 297

Query: 101 --PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
             P  + Y+ L+  LCK+ +++EA+ ++  + + G     +T+  ++  L + KR  EA+
Sbjct: 298 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 357

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L + M    ++ D   Y  L+      G +   S V K M       D  T   ++ G 
Sbjct: 358 KLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGL 417

Query: 219 CRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
            +AGR+  A  + + M   G     V+YS   H
Sbjct: 418 SKAGRIGAAVRIFKSMEARGLAPNEVVYSALIH 450



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 3/151 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ L+  LCK+ +++EA+ ++  + + G     +T+  ++  L + KR  EA+ L
Sbjct: 19  PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 78

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    ++ D   Y  L+      G +   S V K M       D  T   ++ G  +
Sbjct: 79  FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 138

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           AGR+  A  + + M   G     V+YS   H
Sbjct: 139 AGRIGAAVRIFKSMEARGLAPNEVVYSALIH 169



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 82/202 (40%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  L +  KI +A  V   M   G     +T   ++  L++  R+  A  + + M+
Sbjct: 375 YTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSME 434

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++P+   Y+ L+   C    +     +L +M++     D  TY+ L+ G C++G VE
Sbjct: 435 ARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVE 494

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A      M++ G      TY  ++    + G    A              +   +G+L 
Sbjct: 495 AARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALI 554

Query: 286 SKLIGLERFNEANFILKEMNKR 307
           S L    +  +A+   + M +R
Sbjct: 555 SGLCKRRQLTKASLYFQHMKER 576



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 63/157 (40%)

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           ++EEA  LME +     +P +  YN LL   C  G L     +L+K+ +     D  TY 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           +L+ G  +  R  EA+ L + M   G ++    Y  ++  LL+ G   QA          
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               D     ++   L    R   A  I K M  R L
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL 157



 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           KI+EA+ +++ +   G   +  T++ +L+ L +  R+EEA  L+  + +   +PD+  Y 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+     +        + K+M    L  D   Y AL+    + G++ +A  + + M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G      T + ++  L + G    AV+       R +  +  ++ +L   L    + + A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 298 NFILKEMNK 306
             +L +M K
Sbjct: 181 LEMLAQMKK 189


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 99/210 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LIG  C   K+D AL+  + M + G  ++  T++ ++  L    R  +A+ +
Sbjct: 217 PSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAV 276

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M+   +SPD+  YN L+  YC +GN      V ++M  + + A A TY +L+    R
Sbjct: 277 LEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSR 336

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+E   L +  V  G       Y  ++ +    G   +A + +     + I  D   
Sbjct: 337 KGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVT 396

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L      L R +EA  ++ EM KR ++
Sbjct: 397 YNTLIRGFCLLGRLDEARGLIDEMTKRGIQ 426



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 1/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P K  Y TLI   CK+ ++++A +V D ++ +G    SA+ ++ ++       +++ A  
Sbjct: 181 PDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQ 240

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             E M +  V+  +  YN L+ A    G  +    VL++M+   L  D  TY+ L+ G C
Sbjct: 241 YREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYC 300

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G  ++A  +   M   G      TY  ++ A  R G   +  +   V   + I+ D  
Sbjct: 301 KEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVV 360

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
           ++ +L +          A  I+ EM K+
Sbjct: 361 MYNALINSHCAGGDMERAFEIMAEMEKK 388



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 102/229 (44%), Gaps = 24/229 (10%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSVL 86
           T A Y+ LV+A   +        +L +  R+       T+N + N        + +L V 
Sbjct: 253 TVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVF 312

Query: 87  SDLCRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            ++ R      KG  R +A  Y +LI    +  ++ E  R+  +  + G     + ++ +
Sbjct: 313 EEMSR------KGV-RATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNAL 365

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++    G  ME A+ +M  M++ R+ PD   YN L+  +C  G L    G++ +M +  +
Sbjct: 366 INSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGI 425

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
             D        LG C+ G+ ++A  L++ MV  G +   STY  ++  L
Sbjct: 426 QPD--------LGLCKNGQGDDAENLMKEMVGKGITPDDSTYISLIEGL 466



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 6/176 (3%)

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           L   TF+ +L  L    +   A  L+  M      P+   YN ++  +C +G + A   V
Sbjct: 114 LCTTTFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARGRVQAALEV 169

Query: 196 LKKMEEEK-LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST-YAHVMGAL 253
           +++M E   +  D  TY  L+ G C+ GR+E+A  +   M+  G+    +  Y  ++G  
Sbjct: 170 MREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGY 229

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              G    A+++      R + +    +  L   L    R ++A  +L+EM +  L
Sbjct: 230 CDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGL 285


>gi|293333002|ref|NP_001168049.1| uncharacterized protein LOC100381779 [Zea mays]
 gi|223945693|gb|ACN26930.1| unknown [Zea mays]
 gi|414871082|tpg|DAA49639.1| TPA: hypothetical protein ZEAMMB73_603879 [Zea mays]
          Length = 582

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 8/218 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TLI   CK   + +A  ++  ++  G   +  T+  +L  L   +R  E   L
Sbjct: 296 PHVVSYNTLISASCKAGCLKDAKLILTRLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDL 355

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK+    PD+TAYN  +  +C  G+L     VL+ M  EK   D  TY+ L+    +
Sbjct: 356 LAHMKQANHKPDVTAYNIFINYFCRYGHLDQAIDVLEMMVSEKCFPDIVTYNTLLNAISK 415

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
            G V+EA  +   + ++G  V+  TY  ++ AL + G    A+     M+  G  I  D 
Sbjct: 416 RGMVQEALGIFHSIRENGCQVVRITYNTLIDALAKRGDIINAMTLFDEMIVDG--INPDD 473

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLR 316
             +GSL   ++G  + N A   L+ +N+  L +GF+++
Sbjct: 474 VTYGSL---IMGFCKKNMAKEALELLNQM-LALGFEVK 507



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 134/282 (47%), Gaps = 3/282 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L++A+     L+  + +L + + +       T+  + ++       S++  
Sbjct: 295 QPHVVSYNTLISASCKAGCLKDAKLILTRLSAEGLEPNGTTYCILLHSLCDKRRWSEVGD 354

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            LA + +    P  +AY+  I   C+   +D+A+ V+++M         +T++ +L+ ++
Sbjct: 355 LLAHMKQANHKPDVTAYNIFINYFCRYGHLDQAIDVLEMMVSEKCFPDIVTYNTLLNAIS 414

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   ++EA G+   ++E         YN L+ A   +G++     +  +M  + +  D  
Sbjct: 415 KRGMVQEALGIFHSIRENGCQVVRITYNTLIDALAKRGDIINAMTLFDEMIVDGINPDDV 474

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY +L++G C+    +EA  LL +M+  G  V  +T++ ++ AL +      A + + V 
Sbjct: 475 TYGSLIMGFCKKNMAKEALELLNQMLALGFEVKATTFSMMIQALCKGCKAEAAAEILRVM 534

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK-RDLK 310
             R++   +  + S+ +++    R  EA  + +E+ + R LK
Sbjct: 535 VSRNVNHRSAFYLSIVTRVAKSGRLKEAQILHQELYRARSLK 576



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 72/158 (45%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L  G P     + LIG+LC   ++  A++V++ M   G   S ITF+ ++  +      +
Sbjct: 186 LSGGVPDTITCNMLIGQLCCEGQLSSAMKVLEDMRFTGCSPSGITFNTLIRCMCSHHLYD 245

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A    +   +I   P       L+   C +        VL +++ E       +Y+ L+
Sbjct: 246 RAVSFWKEQLKIGWPPYEMTSTLLVDLICKQCGPMRALEVLDELDLEGCQPHVVSYNTLI 305

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
             +C+AG +++A ++L R+  +G     +TY  ++ +L
Sbjct: 306 SASCKAGCLKDAKLILTRLSAEGLEPNGTTYCILLHSL 343



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 1/170 (0%)

Query: 95  RLDKGFPRKSAYDTL-IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           +L  G+P      TL +  +CK      AL V+D +   G     ++++ ++S   +   
Sbjct: 254 QLKIGWPPYEMTSTLLVDLICKQCGPMRALEVLDELDLEGCQPHVVSYNTLISASCKAGC 313

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +++A  ++  +    + P+ T Y  LL + C K   +    +L  M++     D   Y+ 
Sbjct: 314 LKDAKLILTRLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDLLAHMKQANHKPDVTAYNI 373

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            +   CR G +++A  +L  MV +       TY  ++ A+ + G   +A+
Sbjct: 374 FINYFCRYGHLDQAIDVLEMMVSEKCFPDIVTYNTLLNAISKRGMVQEAL 423


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 5/184 (2%)

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           +L++LS++C    +     P    Y++LI  LCK+ +IDEA R+   M   G   + +T+
Sbjct: 479 ALNLLSEMCTKGCK-----PDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTY 533

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + ++  L R    ++A  L+  M     + D   YN L+ A+C  GN+     + ++M  
Sbjct: 534 NTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIM 593

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           + LGAD  + + ++ G C+ G+V+ AF  LR  ++ G      TY  V+  L ++G   +
Sbjct: 594 DGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKE 653

Query: 262 AVKF 265
           A+  
Sbjct: 654 ALNL 657



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 10/280 (3%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R  TK G  P+   S  Y  L++A   +  +     LL +     C     TFN + +  
Sbjct: 242 RDMTKHGCVPN---SIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGL 298

Query: 81  NSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRV-VDIMAEGGFGLS 137
             ++ + D  + + R L +GF P    Y  L+  LC++ K++EA ++ + I       L+
Sbjct: 299 CKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILN 358

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            +    ++S    G+  E    L E M      PD+  YN L+   C +G+L+    ++ 
Sbjct: 359 TLINGYVMS----GQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVN 414

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M       +  TY  LV G C+AG +EEA ++L  M   G ++    Y  ++ AL R  
Sbjct: 415 EMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKE 474

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
               A+  +     +  K D   + SL   L  ++R +EA
Sbjct: 475 KVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEA 514



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 1/172 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++ GF P    Y+ L+  LCK   +  A  +V+ M+  G   + IT+  +++ L +   +
Sbjct: 382 INFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLL 441

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           EEA  ++  M    ++ +   YN L+ A C K  +     +L +M  +    D  TY++L
Sbjct: 442 EEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSL 501

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+  R++EAF L   M+ DG      TY  ++ ALLR G + +A+  V
Sbjct: 502 IYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLV 553



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 7/212 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ +I  LCK+ KI +A ++VD M   GF    +T+  +L  L R  ++ EA  +
Sbjct: 286 PDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI 345

Query: 161 MEVMKEIRVS-PDLTAYNYLLTAYCFKGNLTATSGVLKK-MEEEKLGADARTYDALVLGA 218
           +     I++  P+    N L+  Y   G L      L + M       D  TY+ L+ G 
Sbjct: 346 L-----IKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGL 400

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+ G +  A  L+  M   G      TYA ++  L + G   +A   +     R + +++
Sbjct: 401 CKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINS 460

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            ++  L   L   E+ + A  +L EM  +  K
Sbjct: 461 VIYNCLICALCRKEKVHVALNLLSEMCTKGCK 492



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + +L++++D+      LDK       Y+ LI   CK+  I++ L + + M   G G   I
Sbjct: 547 QKALTLVNDMLFRGCTLDK-----ITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTI 601

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           + + +++ L +  +++ A+  +         PD+  YN +L   C  G +     +  ++
Sbjct: 602 SCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRL 661

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           + E +  DA TY+  +   C+ G V +A     R +++G
Sbjct: 662 QVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENG 700



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 7/209 (3%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYD 107
           + +R LL+ RA   C  T  +++ +     T N   V +++   +  L KG  P    + 
Sbjct: 165 QAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDM--LSKGVSPTVFTFG 222

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
            ++  LC   ++D A  ++  M + G   ++I +  ++  L++  ++ EA  L+E M  +
Sbjct: 223 IVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVM 282

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
              PD+  +N ++   C    +   + ++ +M       D  TY  L+ G CR G++ EA
Sbjct: 283 GCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEA 342

Query: 228 FVLLRRMVDDGQSVLYSTY-AHVMGALLR 255
             +L ++     ++L +    +VM   L+
Sbjct: 343 RKILIKIPCPNNAILNTLINGYVMSGQLK 371



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +YD ++  L        A  V   M   G   +  TF  ++  L     ++ A  L
Sbjct: 181 PTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSL 240

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +    P+   Y  L+ A   K  ++    +L++M       D +T++ ++ G C+
Sbjct: 241 LRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCK 300

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             ++ +A  L+ RM+  G      TY  ++  L R+G   +A K ++
Sbjct: 301 VNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILI 347


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 119/290 (41%), Gaps = 25/290 (8%)

Query: 21  RSFTKSGAFPD---EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           +SF   G   D    P    Y  L++      D+E  R   +K           TF  + 
Sbjct: 180 KSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLI 239

Query: 78  NTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N      +  D      ++     FP    Y+ L+   C   KI  A  + D M E G  
Sbjct: 240 NGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVE 299

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +T++ ++  + R +R+ EA  L++ MK+  VSP+L  YN L+  +C  GNL   S +
Sbjct: 300 ANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSL 359

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L +++   L     TY+ L+ G  +AG  +    L R M   G S    T   ++ A +R
Sbjct: 360 LDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVR 419

Query: 256 L-------GYYAQAVKFVMV-------------CGGRDIKLDTELFGSLG 285
           L         Y+   KF +V             C   ++K  ++LF S+G
Sbjct: 420 LQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMG 469



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 35/197 (17%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL--------------- 145
           P    Y+TLIG  C +  +D+A  ++D +   G   S +T++ ++               
Sbjct: 335 PNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADL 394

Query: 146 ----------------SVL----TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
                           +VL     R + ME+A+ +   M++  + PD+  Y  L+   C 
Sbjct: 395 AREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCM 454

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           KGN+  +S + + M E  +      Y+ ++ G C+      A  LLR M   G     ++
Sbjct: 455 KGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVAS 514

Query: 246 YAHVMGALLRLGYYAQA 262
           Y+ ++G L + G + +A
Sbjct: 515 YSSIIGVLCKDGKWEEA 531



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 95/208 (45%), Gaps = 6/208 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---NTENSLSVLSDL 89
           P    Y+ L+       +L+    LL++   +    +  T+N +    +   +   ++DL
Sbjct: 335 PNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADL 394

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            R +    +G  P K     LI    +L+++++A ++   M + G       +  ++  L
Sbjct: 395 AREME--GRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGL 452

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                M+E+  L   M E+ V P    YN ++  YC + N      +L++ME + L  + 
Sbjct: 453 CMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNV 512

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVD 236
            +Y +++   C+ G+ EEA VLL +M++
Sbjct: 513 ASYSSIIGVLCKDGKWEEAEVLLDKMIE 540



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 1/152 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+++I    K + +D+AL   + M + G       F+ +L  L R    E+AW     +K
Sbjct: 96  YESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELK 155

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E RV  D+ ++  ++   C  GNL  +  +L  +++  L  +   Y  L+ G C+ G +E
Sbjct: 156 E-RVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIE 214

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            A +   +M + G      T+  ++  L + G
Sbjct: 215 RARLFFDKMGEMGLVANQYTFTVLINGLFKKG 246



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I   CK      ALR++  M   G   +  ++  I+ VL +  + EEA  L
Sbjct: 475 PSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVL 534

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCF 185
           ++ M E+++ P  +  N +  A  F
Sbjct: 535 LDKMIELQLKPSASILNMISKAKNF 559



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 76/228 (33%), Gaps = 54/228 (23%)

Query: 57  LLNKRARDCCFNTANTFNFITNTEN------SLSVLSDLCRTLARLDKGF---------- 100
           LL    R  CF  A  F F    E       S  ++   C     LDK F          
Sbjct: 134 LLGSLVRSNCFEKAWLF-FNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMG 192

Query: 101 --PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
             P    Y TLI   CK   I+ A    D M E G   +  TF  +++ L +    ++ +
Sbjct: 193 LSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGF 252

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L E MK   + P+L  YN L+  Y                                   
Sbjct: 253 DLFEKMKINGLFPNLYTYNCLMNEY----------------------------------- 277

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           C  G++  AF L   M + G      TY  ++G + R     +A K V
Sbjct: 278 CGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLV 325


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 135/303 (44%), Gaps = 15/303 (4%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           ++LR L     + Q++ V     +   +PD  T   Y  L+ A   +  +     LL++ 
Sbjct: 209 TILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT---YTILIEATCRDSGVGHAMKLLDEM 265

Query: 62  ARDCCFNTANTFNFITNT-------ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLC 114
               C     T+N + N        + ++  L+D+  +  +     P    ++ ++  +C
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQ-----PNVITHNIILRSMC 320

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
              +  +A +++  M   GF  S +TF+ +++ L R   +  A  ++E M +    P+  
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +YN LL  +C +  +      L++M       D  TY+ ++   C+ G+VE+A  +L ++
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
              G S +  TY  V+  L + G   +A+K +     +D+K DT  + SL   L    + 
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500

Query: 295 NEA 297
           +EA
Sbjct: 501 DEA 503



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           TLI   C+L K  +A ++++I+   G     IT++ ++S   +   +  A   + V+  +
Sbjct: 142 TLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNA---LSVLDRM 198

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            VSPD+  YN +L + C  G L     VL +M +     D  TY  L+   CR   V  A
Sbjct: 199 SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHA 258

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             LL  M D G +    TY  ++  + + G   +A+KF+
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I   CK  +I+ AL V+D M+        +T++ IL  L    ++++A  +
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +    PD+  Y  L+ A C    +     +L +M +     D  TY+ LV G C+
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            GR++EA   L  M   G      T+  ++ ++   G +  A K +
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 8/186 (4%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           N+LSVL  +  +        P    Y+T++  LC   K+ +A+ V+D M +       IT
Sbjct: 190 NALSVLDRMSVS--------PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  ++    R   +  A  L++ M++   +PD+  YN L+   C +G L      L  M 
Sbjct: 242 YTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 301

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
                 +  T++ ++   C  GR  +A  LL  M+  G S    T+  ++  L R G   
Sbjct: 302 SSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLG 361

Query: 261 QAVKFV 266
           +A+  +
Sbjct: 362 RAIDIL 367



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 84/167 (50%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y+T++  LCK  K+++A+ +++ ++  G     IT++ ++  L +  +  +A  
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M+   + PD   Y+ L+     +G +        + E   +  +A T+++++LG C
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC 530

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           ++ + + A   L  M++ G     ++Y  ++  L   G   +A++ +
Sbjct: 531 KSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELL 577



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 84/193 (43%), Gaps = 3/193 (1%)

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           ++ +  +++E  + ++ M   G     I    ++    R  +  +A  ++E+++     P
Sbjct: 111 QMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVP 170

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           D+  YN +++ YC  G +     VL +M    +  D  TY+ ++   C +G++++A  +L
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
            RM+         TY  ++ A  R      A+K +     R    D   +  L + +   
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287

Query: 292 ERFNEANFILKEM 304
            R +EA   L +M
Sbjct: 288 GRLDEAIKFLNDM 300



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
           F L  +  +  L  + R   +EE +  +E M      PD+     L+  +C  G     +
Sbjct: 98  FALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAA 157

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            +L+ +E      D  TY+ ++ G C+AG +  A  +L RM      V Y+T   ++ +L
Sbjct: 158 KILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNT---ILRSL 214

Query: 254 LRLGYYAQAVKFV 266
              G   QA++ +
Sbjct: 215 CDSGKLKQAMEVL 227


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 97/216 (44%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R+    P      +L+  LCK  K  EA + +  MAE GF    + +   L  L + + +
Sbjct: 421 RIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEV 480

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L + +      PD+ AYN L+   C    +     +L +MEE+ L   A TY+ L
Sbjct: 481 DQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTL 540

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+   +EEA + L  M++  +     TY+ ++  L   G    A+      G +  
Sbjct: 541 IDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGC 600

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              +  + +    L    R NEA   L+EM +R++K
Sbjct: 601 TPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMK 636



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 137/317 (43%), Gaps = 29/317 (9%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L T   + +S  + +   +SG    EPTS   + +        D+    +LL K 
Sbjct: 364 NLIDGLCTSNRLQESCGLLQEMEESGI---EPTSFTNNCIFGCLCRRHDISGALHLLKK- 419

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD----------KGF-PRKSAYDTLI 110
                         +   ++S S++ +LC+    ++          +GF P   AY   +
Sbjct: 420 --------MRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACL 471

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
             L K++++D+AL++   +   G+    I ++ ++  L + +R+ EA  L+  M+E  + 
Sbjct: 472 DGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLV 531

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P    YN L+   C   +L      L  M E++   +  TY  L+ G C AGR ++A VL
Sbjct: 532 PSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVL 591

Query: 231 LRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
              M   G    S+ Y  + H    L   G   +A+ ++     R++K DT ++  L + 
Sbjct: 592 WNEMGRKGCTPSSIAYMAFIH---GLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNA 648

Query: 288 LIGLERFNEANFILKEM 304
            +       A  IL+EM
Sbjct: 649 FLVDSNQPLAFEILQEM 665



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 89/209 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + +  +I  L K   +D A+ +   MA  G     + ++ ++  L    R++E+ GL
Sbjct: 322 PNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGL 381

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+E  + P     N +    C + +++    +LKKM         +   +LV   C+
Sbjct: 382 LQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCK 441

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+  EA   L  M ++G       Y+  +  L+++    QA+K       +    D   
Sbjct: 442 HGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIA 501

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   L   +R  EA  +L EM ++ L
Sbjct: 502 YNILIKGLCKTQRIAEAQNLLHEMEEKGL 530



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 5/155 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  L+  L K   ID     +  M + G+G    T  P+L V       ++A   
Sbjct: 64  PNSYSYTCLLEVLSKSICIDLLEMRLKEMHDHGWGFDKYTLTPVLQVYCNMAEFDKA--- 120

Query: 161 MEVMKEI--RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
           ++V  EI  R   D   ++ L+ A+   G +     +++ MEE+ +  + +T+ +L+ G 
Sbjct: 121 LDVFNEIHDRGWVDEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGF 180

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            +  RV++A  L  +M   G +   S Y  ++G L
Sbjct: 181 VKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGL 215



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 2/166 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+G+  +  +  L+    K  K+D+A  +++ M E    L+  TF  ++    +  R+++
Sbjct: 129 DRGWVDEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDK 188

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L + MK+   +PD++ Y+ ++   C   ++     +  +M+  K+  D +    L+ 
Sbjct: 189 ALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLIS 248

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              +   +   F  +   +D   S L   Y  V+ +L+  G   +A
Sbjct: 249 SFSKEEELTCFFEEMHEDMDPKASTLL--YNSVLNSLVDNGSVHKA 292


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 86/190 (45%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + +     S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMDDANELFDEMIDNG 236


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 37/249 (14%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           P+   Y  LV A   E+D +TV  LL++ R R C  N                       
Sbjct: 362 PSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVT-------------------- 401

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
                         Y  L+  L K  +  EAL   D + E G    A  ++ ++ +L R 
Sbjct: 402 --------------YTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 447

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            R+E+A+ ++E M+   ++P++T +N L++A C          +L KMEE+    D +TY
Sbjct: 448 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 507

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVC 269
             L+   C+   V+    L+  M     S  +STY  ++  L R G  AQ+  F+  MV 
Sbjct: 508 TPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVS 567

Query: 270 GGRDIKLDT 278
            G   K +T
Sbjct: 568 KGFAPKQET 576



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 116/257 (45%), Gaps = 10/257 (3%)

Query: 67  FNTANTFNFITNTENSLSVLSDLC--RTLARLDKGF--------PRKSAYDTLIGRLCKL 116
           F+  + F  + +T+    +L  LC  R++ R    F        P +++++TL+   CK 
Sbjct: 283 FHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKA 342

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
           + + EAL  ++ M + GF  S +T+  ++      K  +  + L++ M++ R  P++  Y
Sbjct: 343 RMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTY 402

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
             L+ A    G          K++E+ +  DA  Y++L+    RAGR+E+A+ ++  M  
Sbjct: 403 TILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRT 462

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G +   +T+  ++ A         A+K ++    +    D + +  L       +    
Sbjct: 463 TGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKI 522

Query: 297 ANFILKEMNKRDLKMGF 313
             F++  M ++D+   F
Sbjct: 523 LLFLVCHMFRKDISPDF 539


>gi|42570815|ref|NP_973481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251569|gb|AEC06663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 349

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 3/159 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAW 158
           P    Y+ L+  LCK K +      VD M +  F +    ++F  ++  +   K + EA 
Sbjct: 192 PDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDD-FDVKPDLVSFTILIDNVCNSKNLREAM 250

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  +      PD   YN ++  +C     +   GV KKM+EE +  D  TY+ L+ G 
Sbjct: 251 YLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGL 310

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            +AGRVEEA + L+ MVD G     +TY  +M  + R G
Sbjct: 311 SKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKG 349



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 7/238 (2%)

Query: 74  NFITNTENSLSVLSDLCRTLARLDKGFPR----KSAYDTLIGRLCKLK--KIDEALRVVD 127
           N +  +  S++V++D  +    + K  P     +S +  L+   C+     I    RV++
Sbjct: 89  NSVLQSYGSIAVVNDTVKLFQHILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLN 148

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           +M   G     +T    +  L    R++EA  LM+ + E    PD   YN+LL   C   
Sbjct: 149 LMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCK 208

Query: 188 NLTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +L      + +M ++  +  D  ++  L+   C +  + EA  L+ ++ + G       Y
Sbjct: 209 DLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLY 268

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +M     L   ++AV          ++ D   + +L   L    R  EA   LK M
Sbjct: 269 NTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTM 326


>gi|125570550|gb|EAZ12065.1| hypothetical protein OsJ_01947 [Oryza sativa Japonica Group]
          Length = 348

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 94/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  LC  ++ D+A+ ++D M E G   + +T +PI+  L +  R ++A  +
Sbjct: 8   PTVVTYGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKV 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E      V+P+++ +N L+  YC  G+L   S VLK M E  +    RTY+   +   +
Sbjct: 68  LEKFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAK 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              VE       +M+ +G S    TY  ++  L R       V+ +        + D   
Sbjct: 128 NSDVESGMNFYSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLAT 187

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
              L   L    +F EA    ++M KR +
Sbjct: 188 STMLIHLLCRRHQFEEACAEFEDMFKRGI 216



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 90/231 (38%), Gaps = 9/231 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S +++L+   CK   +  A  V+ +M E G   +  T++       +   +E     
Sbjct: 78  PNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNF 137

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M     SPD   Y  L+        L     ++++M       D  T   L+   CR
Sbjct: 138 YSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCR 197

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVMVCGGRDIKL-- 276
             + EEA      M   G    Y TY  +M  L RLG  +  Q +  +M       KL  
Sbjct: 198 RHQFEEACAEFEDMFKRGIVPQYITYQKLMRELKRLGLVHLIQKLTNLMRSVPHSTKLPG 257

Query: 277 ---DTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINVK 324
              D E   S+  + + L++    + +LKE   +D K   KL++  E +V+
Sbjct: 258 SYRDKEGDDSMEKRKLILQKAQAVSDVLKEC--KDPKELGKLKEDEETDVE 306


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 37/249 (14%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           P+   Y  LV A   E+D +TV  LL++ R R C                          
Sbjct: 303 PSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCP------------------------- 337

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
                    P    Y  L+  L K  +  EAL   D + E G    A  ++ ++ +L R 
Sbjct: 338 ---------PNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 388

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            R+E+A+ ++E M+   ++P++T +N L++A C          +L KMEE+    D +TY
Sbjct: 389 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 448

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVC 269
             L+   C+   V+    L+  M     S  +STY  ++  L R G  AQ+  F+  MV 
Sbjct: 449 TPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVS 508

Query: 270 GGRDIKLDT 278
            G   K +T
Sbjct: 509 KGFAPKQET 517



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 116/257 (45%), Gaps = 10/257 (3%)

Query: 67  FNTANTFNFITNTENSLSVLSDLC--RTLARLDKGF--------PRKSAYDTLIGRLCKL 116
           F+  + F  + +T+    +L  LC  R++ R    F        P +++++TL+   CK 
Sbjct: 224 FHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKA 283

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
           + + EAL  ++ M + GF  S +T+  ++      K  +  + L++ M++ R  P++  Y
Sbjct: 284 RMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTY 343

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
             L+ A    G          K++E+ +  DA  Y++L+    RAGR+E+A+ ++  M  
Sbjct: 344 TILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRT 403

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G +   +T+  ++ A         A+K ++    +    D + +  L       +    
Sbjct: 404 TGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKI 463

Query: 297 ANFILKEMNKRDLKMGF 313
             F++  M ++D+   F
Sbjct: 464 LLFLVCHMFRKDISPDF 480


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 4/238 (1%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---NT 79
           F ++ +F   PT   +  L++   +  + E    +  K  +  C      +N +      
Sbjct: 53  FNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGR 112

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
              L    ++ R + ++    P +  Y  L+  L K  ++ EA    D M E G   +  
Sbjct: 113 SGQLDSAMEMFREM-KIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIP 171

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T++ ++    +  +++ A GL   MK     P +  YN LL A C  G + A   +  KM
Sbjct: 172 TYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKM 231

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
             +    D+ TY  LV G  ++GRVEEA  + R MVD G +V    Y  ++  L + G
Sbjct: 232 TGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAG 289



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 122/275 (44%), Gaps = 2/275 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P+   Y+ L++A      +   R L +K   D C   + T++ + N       + +  +
Sbjct: 202 QPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHK 261

Query: 92  TLARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               + D+G       Y++L+  L K   +D   +++  M+  GF   A +F+ I+  L 
Sbjct: 262 VFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALG 321

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  + + A  +   M E    PDL +YN L+ +Y   G+      +L++M E     + +
Sbjct: 322 KANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETK 381

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY++L+      G+V+EAF +L  M   G      TY  +M  L + G   +A +     
Sbjct: 382 TYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQM 441

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             + ++ DT  +      L   +R +EA  + K+M
Sbjct: 442 KDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 113/258 (43%), Gaps = 12/258 (4%)

Query: 57  LLNKRARDCCFNTANTF----NFITNT---ENSLSVLSDLCRTLARLDKGFPRKSAYDTL 109
           L N+     C  T + F    + + N+   E +  V   L +   +LD+      AY+ L
Sbjct: 52  LFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDR-----FAYNVL 106

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           I    +  ++D A+ +   M   G      T+  +++ L +  R++EA    + M E  +
Sbjct: 107 IRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGL 166

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           +P++  YN L+ A+   G L    G+  +M+         TY+ L+   C AGRV  A  
Sbjct: 167 TPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARK 226

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           L  +M  DG S    TY+ ++  L + G   +A K       R + +D   + SL + L 
Sbjct: 227 LFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLA 286

Query: 290 GLERFNEANFILKEMNKR 307
                +    ++KEM+++
Sbjct: 287 KAGNMDRVWKLMKEMSRK 304



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 2/222 (0%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y+ L+       +++ V  L+ + +R      A +FN I +     +         AR+ 
Sbjct: 278 YNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMV 337

Query: 98  KGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +    P   +Y+ LI    +     +A ++++ M E GF     T++ ++  L    +++
Sbjct: 338 ESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVD 397

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA+ ++E M+     PD+  YN L+     +G     + + ++M+++ +  D  +Y   +
Sbjct: 398 EAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRI 457

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G     R++EA VL + M   G  V  + Y  ++ A  R G
Sbjct: 458 DGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAG 499



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 5/207 (2%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           +  ++ G  PD   +  ++ +++A G     +  R +  +     C     ++N + ++ 
Sbjct: 299 KEMSRKGFHPD---AFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSY 355

Query: 81  NSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
                 +   + L  + + GF P    Y++LI  L    ++DEA  V++ M   G     
Sbjct: 356 ARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDV 415

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T++ ++ +L +    + A  L + MK+  V PD  +Y   +    F   L     + K 
Sbjct: 416 VTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKD 475

Query: 199 MEEEKLGADARTYDALVLGACRAGRVE 225
           M+      D   Y  L+  A RAG  E
Sbjct: 476 MKAVGCPVDKAMYRILIRAAHRAGDTE 502



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 94  ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           A L++G  P    Y+ L+    K+ ++D AL +   M   GF  S +T++ +L  L    
Sbjct: 160 AMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAG 219

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           R+  A  L   M     SPD   Y+ L+      G +     V ++M +  +  D   Y+
Sbjct: 220 RVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYN 279

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +L+    +AG ++  + L++ M   G      ++  +M AL
Sbjct: 280 SLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDAL 320



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 56/137 (40%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G  L   T   +++   RG +  +A+ L    +    SP + A+  L+      G 
Sbjct: 21  MVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGE 80

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                 V KK+ ++    D   Y+ L+    R+G+++ A  + R M   G      TY  
Sbjct: 81  FERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGF 140

Query: 249 VMGALLRLGYYAQAVKF 265
           ++ AL + G   +A  F
Sbjct: 141 LVNALGKAGRVQEARSF 157


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 123/279 (44%), Gaps = 2/279 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   ++ L++A    +  + V  L  K  R    +   T+N + N     S +S     
Sbjct: 83  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142

Query: 93  LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++ K G+ P      +L+   C  K+I +A+ +VD M E G+    ITF  ++  L  
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +  EA  L++ M +    P+L  Y  ++   C +G+      +L KME  K+ AD   
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           ++ ++   C+   V++A  L + M   G      TY+ ++  L   G ++ A + +    
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + I  +   F +L    +   +F EA  +  +M KR +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 113/284 (39%), Gaps = 6/284 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  +VN      D +    LLNK            FN I ++      + D   
Sbjct: 222 QPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 281

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               ++ KG  P    Y +LI  LC   +  +A +++  M E     + +TF+ ++    
Sbjct: 282 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 341

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  +  EA  L + M +  + PD+  YN L+  +C    L     + + M  +    D  
Sbjct: 342 KEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVV 401

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVM 267
           TY+ L+ G C++ RVE+   L R M   G      TY  ++  L   G    AQ V   M
Sbjct: 402 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 461

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           V  G  +  D   +  L   L    +  +A  +   M K ++K+
Sbjct: 462 VSDG--VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 503



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 35/202 (17%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK K++++   +   M+  G     +T+  ++  L      + A  
Sbjct: 397 FPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 456

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    V PD+  Y+ LL   C  G L     V   M++ ++  D   Y  ++ G C
Sbjct: 457 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 516

Query: 220 RAGRV-----------------------------------EEAFVLLRRMVDDGQSVLYS 244
           +AG+V                                   +EA+ LL++M +DG      
Sbjct: 517 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSG 576

Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
           TY  ++ A LR G  A + + +
Sbjct: 577 TYNTLIRAHLRDGDKAASAELI 598



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 96/208 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI  L    K  EA+ +VD M + G   + +T+  +++ L +    + A  L
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNL 247

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+  ++  D+  +N ++ + C   ++     + K+ME + +  +  TY +L+   C 
Sbjct: 248 LNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCS 307

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LL  M++   +    T+  ++ A ++ G + +A K       R I  D   
Sbjct: 308 YGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFT 367

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + SL +     +R ++A  + + M  +D
Sbjct: 368 YNSLVNGFCMHDRLDKAKQMFEFMVSKD 395



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 80/184 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI    K  K  EA ++ D M +        T++ +++      R+++A  +
Sbjct: 328 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 387

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M      PD+  YN L+  +C    +   + + ++M    L  D  TY  L+ G   
Sbjct: 388 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 447

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  + A  + ++MV DG      TY+ ++  L   G   +A++        +IKLD  +
Sbjct: 448 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 507

Query: 281 FGSL 284
           + ++
Sbjct: 508 YTTM 511



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 63/134 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LC   K+++AL V D M +    L    +  ++  + +  ++++ W L
Sbjct: 468 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 527

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V P++  YN +++  C K  L     +LKKM+E+    ++ TY+ L+    R
Sbjct: 528 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLR 587

Query: 221 AGRVEEAFVLLRRM 234
            G    +  L+R M
Sbjct: 588 DGDKAASAELIREM 601



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 99/216 (45%), Gaps = 16/216 (7%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-- 78
           R  +  G   D  T   Y  L+    H+ D +  + +  +   D       T++ + +  
Sbjct: 424 REMSHRGLVGDTVT---YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 480

Query: 79  -----TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
                 E +L V   + ++  +LD        Y T+I  +CK  K+D+   +   ++  G
Sbjct: 481 CNNGKLEKALEVFDYMQKSEIKLDI-----YIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 535

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
              + +T++ ++S L   + ++EA+ L++ MKE    P+   YN L+ A+   G+  A++
Sbjct: 536 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA 595

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            ++++M   +   DA T   LV      GR++++F+
Sbjct: 596 ELIREMRSCRFVGDASTI-GLVANMLHDGRLDKSFL 630



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 88/213 (41%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    ++ L+  + K+KK D  + + + M          T++ +++   R  ++  A
Sbjct: 80  RPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLA 139

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M ++   P +   + LL  YC    ++    ++ +M E     D  T+  L+ G
Sbjct: 140 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 199

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
                +  EA  L+ RMV  G      TY  V+  L + G    A+  +       I+ D
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEAD 259

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             +F ++   L      ++A  + KEM  + ++
Sbjct: 260 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 292



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 69/149 (46%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+D+A+ +   M +     S + F+ +LS + + K+ +    L E M+ + +   L  YN
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C +  ++    +L KM +        T  +L+ G C   R+ +A  L+ +MV+ 
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G      T+  ++  L      ++AV  V
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALV 213


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 86/190 (45%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + +     S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 20/216 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           + A+G + D+ T   L+N   ++   + AN           + N     +++   C+   
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKN-G 255

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+ 
Sbjct: 256 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  +  TY  ++   C+ G V     LL+ M  DG
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDNG 236


>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +GF    +Y TLI   C+     +A ++ + M + G   + +TF  ++    R      A
Sbjct: 320 RGFCDVVSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVA 379

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L++ M E+ +SPD   Y  +L   C  GN+    G+   M E ++  DA +Y++L+ G
Sbjct: 380 KKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGIFNDMIEHEITPDAISYNSLISG 439

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            CR+GRV EA  L   M          T+  ++G L+R
Sbjct: 440 LCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIR 477



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P   A   L+  LC  +K+D A  +V + +      LS + ++ ++S   +  R+E+A  
Sbjct: 182 PDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSIVVYNALISGFCKAGRIEKAEA 241

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M +I   PDL  YN LL  Y     L    GV+ +M    +  DA +Y+ L+   C
Sbjct: 242 LKSFMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMTEMVRSGIQLDAYSYNQLLKRHC 301

Query: 220 RAGRVEEAF-VLLRRMVDDG--QSVLYST 245
           R    +  +  +L+ M   G    V YST
Sbjct: 302 RVSHPDRCYSFMLKEMEPRGFCDVVSYST 330



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 123/281 (43%), Gaps = 24/281 (8%)

Query: 46  GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSA 105
           G E DL T   LLN    +         N +   E    V++++ R+  +LD       +
Sbjct: 250 GCEPDLVTYNVLLNYYYDN---------NMLKRAEG---VMTEMVRSGIQLDA-----YS 292

Query: 106 YDTLIGRLCKLKKIDEALR-VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           Y+ L+ R C++   D     ++  M   GF    +++  ++    R    ++A+ L E M
Sbjct: 293 YNQLLKRHCRVSHPDRCYSFMLKEMEPRGF-CDVVSYSTLIETFCRASNTKKAYKLFEEM 351

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++  +  ++  +  L+ A+  +GN +    +L +M E  L  D   Y  ++   C++G V
Sbjct: 352 RQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNV 411

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++A+ +   M++   +    +Y  ++  L R G   +A+K      G++   D   F  +
Sbjct: 412 DKAYGIFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFI 471

Query: 285 GSKLIGLERFNEANFILKEMNKRDLKMGFKL-RDYYEINVK 324
              LI  ++ + A  +  +M    +  GF L RD  +  +K
Sbjct: 472 IGGLIREKKLSAAYKVWDQM----MDKGFTLDRDVSDTLIK 508



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 56/119 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y T++  LCK   +D+A  + + M E      AI+++ ++S L R  R+ EA  L
Sbjct: 393 PDRIFYTTILDHLCKSGNVDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKL 452

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            E MK     PD   + +++     +  L+A   V  +M ++    D    D L+  +C
Sbjct: 453 FEDMKGKECCPDELTFKFIIGGLIREKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKASC 511



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 71/161 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI   CK  +I++A  +   M++ G     +T++ +L+       ++ A G+M  M 
Sbjct: 223 YNALISGFCKAGRIEKAEALKSFMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMTEMV 282

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +  D  +YN LL  +C   +       + K  E +   D  +Y  L+   CRA   +
Sbjct: 283 RSGIQLDAYSYNQLLKRHCRVSHPDRCYSFMLKEMEPRGFCDVVSYSTLIETFCRASNTK 342

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A+ L   M   G      T+  ++ A LR G  + A K +
Sbjct: 343 KAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLL 383



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 59/137 (43%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+  IG L K  + + A  +   M   GF L   T+   +S L + K+ E    L+  
Sbjct: 45  SDYNRFIGVLVKESRFELAEAIYRDMMPMGFSLIPFTYSRFISGLCKVKKFELIDALLRD 104

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+ +   PD+ A+N  L   C +  +         M +     D  +Y  L+ G  RAG+
Sbjct: 105 METLGFIPDIWAFNIYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGK 164

Query: 224 VEEAFVLLRRMVDDGQS 240
           V +A  +   M+  G S
Sbjct: 165 VTDAVEIWNAMIRSGVS 181



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 6/129 (4%)

Query: 106 YDTLIGRLCKLKK---IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           Y   I  LCK+KK   ID  LR ++ +   GF      F+  L +L R  ++  A     
Sbjct: 82  YSRFISGLCKVKKFELIDALLRDMETL---GFIPDIWAFNIYLDLLCRENKVGFAVQTFF 138

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M +    PD+ +Y  L+      G +T    +   M    +  D +   ALV+G C A 
Sbjct: 139 CMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHAR 198

Query: 223 RVEEAFVLL 231
           +V+ A+ ++
Sbjct: 199 KVDLAYEMV 207


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 2/255 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ LVN    E  L+     LN            T N I  +  S     D  +
Sbjct: 48  KPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEK 107

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  +  KG  P    ++ LI  LC+   +  A+ +++ M   G   ++++++P+L    
Sbjct: 108 LLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFC 167

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + K+M+ A   +E+M      PD+  YN +LTA C  G + A   +L ++  +       
Sbjct: 168 KEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLI 227

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ ++ G  + G+ ++A  LL  M   G      TY+ ++  L R G   +A+KF    
Sbjct: 228 TYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDV 287

Query: 270 GGRDIKLDTELFGSL 284
            G  +K +   + S+
Sbjct: 288 EGFGVKPNAFTYNSI 302



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 106/248 (42%), Gaps = 39/248 (15%)

Query: 57  LLNKRARDCCFNTANTFNFITN-----------------------TENSLS---VLSDLC 90
           LL +  R  C  +  TFN + N                       T NSLS   +L   C
Sbjct: 108 LLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFC 167

Query: 91  RTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           +   ++D+             +P    Y+T++  LCK  K+D A+ +++ ++  G     
Sbjct: 168 KE-KKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVL 226

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           IT++ ++  L++  + ++A  L+  M+   + PD+  Y+ L+     +G +         
Sbjct: 227 ITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHD 286

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           +E   +  +A TY++++ G C+A + + A   L  M+  G      +Y  ++  +   G 
Sbjct: 287 VEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGL 346

Query: 259 YAQAVKFV 266
             +A++ +
Sbjct: 347 AKEALELL 354



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/208 (17%), Positives = 91/208 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y  LI   C    + +A++++D M   G     +T++ +++ + +  R++EA  
Sbjct: 13  YPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIK 72

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +  M      P++  +N +L + C  G       +L +M  +       T++ L+   C
Sbjct: 73  FLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLC 132

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R G +  A  +L +M   G +    +Y  ++    +     +A++++ +   R    D  
Sbjct: 133 RKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIV 192

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
            + ++ + L    + + A  +L +++ +
Sbjct: 193 TYNTMLTALCKDGKVDAAVELLNQLSSK 220


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 124/279 (44%), Gaps = 2/279 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   ++ L++A    +  + V  L  K  R    +   T+N + N     S +S     
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 93  LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++ K G+ P      +L+   C  K+I +A+ +VD M E G+    ITF  ++  L  
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +  EA  L++ M +    P+L  Y  ++   C +G++     +L KME  K+ AD   
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           ++ ++   C+   V++A  L + M   G      TY+ ++  L   G ++ A + +    
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + I  +   F +L    +   +F EA  +  +M KR +
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 114/284 (40%), Gaps = 6/284 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  +VN      D++    LLNK            FN I ++      + D   
Sbjct: 147 QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 206

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               ++ KG  P    Y +LI  LC   +  +A +++  M E     + +TF+ ++    
Sbjct: 207 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 266

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  +  EA  L + M +  + PD+  YN L+  +C    L     + + M  +    D  
Sbjct: 267 KEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLD 326

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVM 267
           TY+ L+ G C++ RVE+   L R M   G      TY  ++  L   G    AQ V   M
Sbjct: 327 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 386

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           V  G  +  D   +  L   L    +  +A  +   M K ++K+
Sbjct: 387 VSDG--VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 428



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 35/202 (17%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK K++++   +   M+  G     +T+  ++  L      + A  
Sbjct: 322 FPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 381

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    V PD+  Y+ LL   C  G L     V   M++ ++  D   Y  ++ G C
Sbjct: 382 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 441

Query: 220 RAGRV-----------------------------------EEAFVLLRRMVDDGQSVLYS 244
           +AG+V                                   +EA+ LL++M +DG      
Sbjct: 442 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSG 501

Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
           TY  ++ A LR G  A + + +
Sbjct: 502 TYNTLIRAHLRDGDKAASAELI 523



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 80/184 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI    K  K  EA ++ D M +        T++ +++      R+++A  +
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M      PDL  YN L+  +C    +   + + ++M    L  D  TY  L+ G   
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 372

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  + A  + ++MV DG      TY+ ++  L   G   +A++        +IKLD  +
Sbjct: 373 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 432

Query: 281 FGSL 284
           + ++
Sbjct: 433 YTTM 436



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 89/213 (41%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    ++ L+  + K+KK D  + + + M   G   +  T++ +++   R  ++  A
Sbjct: 5   RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 64

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M ++   P +   + LL  YC    ++    ++ +M E     D  T+  L+ G
Sbjct: 65  LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 124

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
                +  EA  L+ RMV  G      TY  V+  L + G    A   +       I+ D
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             +F ++   L      ++A  + KEM  + ++
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 217



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LC   K+++AL V D M +    L    +  ++  + +  ++++ W L
Sbjct: 393 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 452

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V P++  YN +++  C K  L     +LKKM+E+    D+ TY+ L+    R
Sbjct: 453 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLR 512

Query: 221 AGRVEEAFVLLRRM 234
            G    +  L+R M
Sbjct: 513 DGDKAASAELIREM 526



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 99/216 (45%), Gaps = 16/216 (7%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-- 78
           R  +  G   D  T   Y  L+    H+ D +  + +  +   D       T++ + +  
Sbjct: 349 REMSHRGLVGDTVT---YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 405

Query: 79  -----TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
                 E +L V   + ++  +LD        Y T+I  +CK  K+D+   +   ++  G
Sbjct: 406 CNNGKLEKALEVFDYMQKSEIKLDI-----YIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 460

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
              + +T++ ++S L   + ++EA+ L++ MKE    PD   YN L+ A+   G+  A++
Sbjct: 461 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA 520

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            ++++M   +   DA T   LV      GR++++F+
Sbjct: 521 ELIREMRSCRFVGDASTI-GLVANMLHDGRLDKSFL 555


>gi|302763707|ref|XP_002965275.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
 gi|300167508|gb|EFJ34113.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
          Length = 445

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 4/276 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P S  Y+ L++A      ++  R  L   A+        T+N +        +L +   
Sbjct: 80  KPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFE 139

Query: 92  TLARLDK-GFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            +  ++  GF   +  ++ ++  LCK  K DEA +V++ M       + +T + IL    
Sbjct: 140 LMGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILTLNLILHAFC 199

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  R EEA G+ ++M E+   P +  +N LL  +C    + + + +L+ M   K   +  
Sbjct: 200 KAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLETMARSKCKPNFV 259

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSV-LYSTYAHVMGALLRLGYYAQAVKFVMV 268
           TY  +V      GR+ EA   L ++V  G +  L    A+V G L + G    A +F+ V
Sbjct: 260 TYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAG-LCKTGEMDLASRFLTV 318

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                 + +T  + SL      L R +EA  +L+EM
Sbjct: 319 MAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEM 354



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 39/242 (16%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + ++   CK  + +EAL + DIM E GF  + +TF+ +L +     +M+ A  L
Sbjct: 186 PNILTLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAEL 245

Query: 161 MEVMKEIRVSPDLTAYNYLLTAY-----------------------------------CF 185
           +E M   +  P+   Y+ ++  +                                   C 
Sbjct: 246 LETMARSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCK 305

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G +   S  L  M EE   A+  TY++LV G C+ GR++EA  +L  M+ +G     +T
Sbjct: 306 TGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTT 365

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDI---KLDTELFGSLGSKLIGLERFNEANFILK 302
           Y+ ++  L   G    A   VM+   R +   + D   F  L  KL  L   + A  +L+
Sbjct: 366 YSVLIQGLCSAGQIVHAF-MVMLQVTRAVESARPDPATFVKLIEKLCELGEMDRAALVLE 424

Query: 303 EM 304
            M
Sbjct: 425 RM 426


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 12/183 (6%)

Query: 96  LDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           LDKGF  KSA            Y  LI  LCK  K+DEA  +   M + G   + +TF  
Sbjct: 187 LDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTT 246

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +  +++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M  + 
Sbjct: 247 LIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKG 306

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           L  D  TY  L+ G+C+ G +E AF   +RM+++   +    Y  ++  L + G    A 
Sbjct: 307 LKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 264 KFV 266
           K +
Sbjct: 367 KML 369



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    +   +D+  R+   M   G      T+  +++ L +  +M+EA  L
Sbjct: 169 PSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK  +I  +  V D + + G   S ++F+ +++   R   +
Sbjct: 128 LECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++ + L   M    V PD+  Y+ L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 188 DKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ G+V+ A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK   + +A  +++ M+  G     IT+  ++    +   +E A+  
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEY 333

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  +  D  AY  L++  C +G       +L++M    L  D+ TY  ++   C+
Sbjct: 334 RKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCK 393

Query: 221 AGRVEEAFVLLRRMVDDGQ 239
            G V     LL+ M  DG 
Sbjct: 394 KGDVWTGSKLLKEMQRDGH 412


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 171 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 230

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 231 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 290

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            ++L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 291 MKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSV 350

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D+  +  + ++        + + +LKEM +
Sbjct: 351 DAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQR 396



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N     +++   C+   R+
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 244

Query: 97  DKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   + +A  ++D M+        IT+  +
Sbjct: 245 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTL 304

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +  +  D  AY  L++  C +G       +L++M    L
Sbjct: 305 IDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGL 364

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             D+RTY  ++   C+ G V +   LL+ M  DG      TY  +M  
Sbjct: 365 KPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 56/135 (41%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E + E      L  +N L+
Sbjct: 71  DAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM 130

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +Y+ L+ G  R G ++E F L   M+  G  
Sbjct: 131 HRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ 190

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 191 PDVYTYSVLINGLCK 205



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 88/221 (39%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 75  CYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 134

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 135 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 194

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C+  ++++A  L   M+  G      T+  ++    + G    A++     
Sbjct: 195 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 254

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + +  D   + +L   L       +A+ ++ EM+ ++LK
Sbjct: 255 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELK 295


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 126/278 (45%), Gaps = 3/278 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVLSDLCR 91
           P   + ++L+N  G    LE +  + N+     C  T  ++N +      S + +S++  
Sbjct: 336 PDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSS 395

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              ++  D   P +  Y  LI   CK  ++++AL +++ M E GF      +  +++ L 
Sbjct: 396 WFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALG 455

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + KR E A  L + +KE   +     Y  ++  +   G L+    +  +M+ +  G D  
Sbjct: 456 KAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVY 515

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
            Y+AL+ G  +AG V EA  LLR+M ++G +   +++  ++    R G   +A++     
Sbjct: 516 AYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETM 575

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
               IK D   + +L         F EA  +++EM  +
Sbjct: 576 KHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDK 613



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 126/302 (41%), Gaps = 53/302 (17%)

Query: 32  EPTSAYYDD----LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
           +PTS+ Y+     L+    HE+  E    + N+     CF    T++ + ++   L    
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD---CFPDTITYSALISSYEKLGRND 250

Query: 88  DLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
              R    +      P +  Y TL+G   K+ K+++AL + + M   G   +  T+  ++
Sbjct: 251 SAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310

Query: 146 SVLTRGKRMEEAW-------------------GLMEVMKEI----------------RVS 170
             L +  R+EEA+                    LM ++ ++                R +
Sbjct: 311 KGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCT 370

Query: 171 PDLTAYNYLLTA-YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           P + +YN ++ A +  K  ++  S    KM+ + +     TY  L+ G C+  RVE+A +
Sbjct: 371 PTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALL 430

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           LL  M + G     + Y  ++ AL +   Y  A +       +++K   E FG++ S++ 
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELF-----KELK---ENFGNVSSRVY 482

Query: 290 GL 291
            +
Sbjct: 483 AV 484



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 7/206 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + +++L+     + G FP  P  A Y  L+NA G  +  E    L  +   +    ++  
Sbjct: 425 VEKALLLLEEMDEKG-FP--PCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRV 481

Query: 73  FNFITNTENSLSVLS---DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           +  +         LS   DL   +     G P   AY+ L+  + K   ++EA  ++  M
Sbjct: 482 YAVMIKHFGKCGKLSEAVDLFNEMKNQGSG-PDVYAYNALMSGMVKAGMVNEANSLLRKM 540

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E G      + + IL+   R      A  + E MK   + PD   YN LL  +   G  
Sbjct: 541 EENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMF 600

Query: 190 TATSGVLKKMEEEKLGADARTYDALV 215
              + ++++M+++    DA TY +++
Sbjct: 601 EEAARLMREMKDKGFEYDAITYSSIL 626


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ +I  LCK K++DEA+ ++  M         +T++ ++  L +  R+  A  L
Sbjct: 251 PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNL 310

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M       D+  Y  LL A C   NL   + +  KM+E  +     TY AL+ G C+
Sbjct: 311 MNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCK 370

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR++ A  L + ++  G  +   TY  ++  L + G + +A+
Sbjct: 371 GGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEAL 413



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 2/162 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI  LCK  K   A ++   M + G   +  +++ +++ L + KR++EA  L
Sbjct: 218 PDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNL 275

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    + PD   YN L+   C  G +T+   ++ +M      AD  TY +L+   C+
Sbjct: 276 LREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCK 335

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              +++A  L  +M + G      TY  ++  L + G    A
Sbjct: 336 NQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNA 377



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 108/247 (43%), Gaps = 13/247 (5%)

Query: 75  FITNTENSLSVLSDLCRT--------LARL--DKGF-PRKSAYDTLIGRLCKLKKIDEAL 123
           F TN  +  ++L+ LC+T        L R+  D+   P    Y  +I  LCK K ++EA 
Sbjct: 111 FQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAY 170

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +   M       + IT++ ++       ++  A+ L+  M    ++PD+  ++ L+ A 
Sbjct: 171 DLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDAL 230

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C +G       +   M +  +  +  +Y+ ++ G C+  RV+EA  LLR M+        
Sbjct: 231 CKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDT 288

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++  L + G    A+  +     R    D   + SL   L   +  ++A  +  +
Sbjct: 289 VTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMK 348

Query: 304 MNKRDLK 310
           M +R ++
Sbjct: 349 MKERGIQ 355



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 120/269 (44%), Gaps = 21/269 (7%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF- 100
           ++  G E++L T+  L+N      CF       F      S S+L  +      L  G+ 
Sbjct: 36  MDVKGIEQNLVTLSILIN------CFCHLGQMAF------SFSLLGKI------LKLGYX 77

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TL+  LC   ++ + L   D +    F  + +++  +L+ L +      A  L
Sbjct: 78  PNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKL 137

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + ++++    P++  Y+ ++   C    +     +  +M+  ++  +  TY+ L+   C 
Sbjct: 138 LRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCL 197

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG++  AF LL  M+    +    T++ ++ AL + G  A+ +   MV  G  +  +   
Sbjct: 198 AGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNAKQIFHAMVQMG--VNPNVYS 255

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  + + L   +R +EA  +L+EM  +++
Sbjct: 256 YNIMINGLCKCKRVDEAMNLLREMLHKNM 284



 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 72/171 (42%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           I F+ IL  L + K       L + M    +  +L   + L+  +C  G +  +  +L K
Sbjct: 11  IEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGK 70

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           + +     +  T+  L+ G C  G V++      ++V         +Y  ++  L + G 
Sbjct: 71  ILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGE 130

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              A+K + +   R  + +  ++ ++   L   +  NEA  +  EM+ R++
Sbjct: 131 TRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREI 181



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 5/143 (3%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ ++G L KLK     + +   M   G   + +T   +++      +M  ++ L+  + 
Sbjct: 13  FNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKIL 72

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           ++   P+   +  L+   C KG +        K+  +    +  +Y  L+ G C+ G   
Sbjct: 73  KLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETR 132

Query: 226 EAFVLLRRMVDDGQS----VLYS 244
            A  LL RM++D  +    V+YS
Sbjct: 133 CAIKLL-RMIEDRSTRPNVVMYS 154


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 86/190 (45%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + +     S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 20/216 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           + A+G + D+ T   L+N   ++   + AN           + N     +++   C+   
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKN-G 255

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+ 
Sbjct: 256 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  +  TY  ++   C+ G V     LL+ M  DG
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDNG 236


>gi|297723907|ref|NP_001174317.1| Os05g0275100 [Oryza sativa Japonica Group]
 gi|255676205|dbj|BAH93045.1| Os05g0275100, partial [Oryza sativa Japonica Group]
          Length = 213

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y +LI        IDEA  + D+M   G   + IT++ ++  L +  ++  A  
Sbjct: 6   LPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVN 65

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   ++   +SP+   YN L+  YC +G  T    + +KM EE +     TY  L+ G C
Sbjct: 66  LFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLC 125

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
             G +EEA  LL +M+++     Y TY  ++   ++ G
Sbjct: 126 TQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSG 163



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 66/127 (51%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  ++        ++EA+ L +VM    ++P++  YN L+   C  G L+    +  K+
Sbjct: 11  TYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKL 70

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           + + +  +  TY+ L+   C+ G+  EAF L ++MV++G      TY+ ++  L   GY 
Sbjct: 71  QSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYM 130

Query: 260 AQAVKFV 266
            +A+K +
Sbjct: 131 EEAIKLL 137



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 64/134 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LCK  K+  A+ + + +   G   + IT++ ++    +  +  EA+ L
Sbjct: 42  PNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKL 101

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  + P +  Y+ L+   C +G +     +L +M E  +  +  TY  L+ G  +
Sbjct: 102 KQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIK 161

Query: 221 AGRVEEAFVLLRRM 234
           +G +EE   L   M
Sbjct: 162 SGNMEEISKLYDEM 175


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 107/207 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y+ L+   C+L  + EA +V++IM       +  T++ +++      +++EA+ +
Sbjct: 281 PNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRI 340

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M+++ V PD+  YN L+       + +    ++++M+++ +  +A TY+ ++   C+
Sbjct: 341 RDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCK 400

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + EA   L +M ++G S    TY  ++GA  + G   +A + +     + +K+DT  
Sbjct: 401 KGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWT 460

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
             ++   L   ++ +EA  +L   +KR
Sbjct: 461 LNTILHCLCVEKKLDEAYNLLCSASKR 487



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 6/214 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI    K +K D AL + D M E     S IT++ ++  L + +++++A   +  M
Sbjct: 495 SYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEM 554

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E  + PD T YN ++  +C +GN+        +M E     D  T + L+ G CR G +
Sbjct: 555 LENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGML 614

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           E+A  L   +V  G+ +   TY  ++ +L + G +  A   +     + +  D   +  +
Sbjct: 615 EKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVI 674

Query: 285 GSKLIGLERFNEA-NFILKE-----MNKRDLKMG 312
            + L    R  EA  F LK      ++ ++LK+G
Sbjct: 675 IAALTDAGRIKEAEEFTLKMVESGIVHDQNLKLG 708



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 134/336 (39%), Gaps = 44/336 (13%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           I ++  +     K    PD  T   Y+ L++     RD   V  L+ +  +      A T
Sbjct: 334 IDEAFRIRDEMEKMNVLPDVVT---YNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVT 390

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKL-------------- 116
           +N I         +++   TL ++++    P    Y+TLIG  CK               
Sbjct: 391 YNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMT 450

Query: 117 ---------------------KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
                                KK+DEA  ++   ++ G+ L  +++  ++    + ++ +
Sbjct: 451 SKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGD 510

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L + MKE ++ P    YN ++   C    +      L +M E  L  D  TY+ ++
Sbjct: 511 RALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIII 570

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRD 273
            G C  G VE+AF     M+++       T   ++  L R G   +A+K    +V  G+D
Sbjct: 571 HGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKD 630

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           I  D   + ++ S L    +F  A  +L EM  + L
Sbjct: 631 I--DVVTYNTIISSLCKEGKFENAYDLLTEMEAKKL 664



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 75/168 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+++IG LC+ +K+D+A+  ++ M E G      T++ I+        +E+A+ 
Sbjct: 525 MPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQ 584

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M E    PD+   N LL   C +G L     +   +  +    D  TY+ ++   C
Sbjct: 585 FHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLC 644

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           + G+ E A+ LL  M          TY  ++ AL   G   +A +F +
Sbjct: 645 KEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTL 692



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G  P ++ Y+ +I   C    +++A +  + M E  F     T + +L  L R   +
Sbjct: 555 LENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGML 614

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A  L   +       D+  YN ++++ C +G       +L +ME +KLG D  TY  +
Sbjct: 615 EKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVI 674

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG 238
           +     AGR++EA     +MV+ G
Sbjct: 675 IAALTDAGRIKEAEEFTLKMVESG 698


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 172 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 231

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L    G++ +M 
Sbjct: 232 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMS 291

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 292 MKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPV 351

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++        + + +LKEM +
Sbjct: 352 DAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 397



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 53/117 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI   CK   +D A      M +    L  + +  I+S L +  R  +A  +
Sbjct: 297 PDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKM 356

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +  M  + + PD   Y  ++  +C KG++   S +LK+M+         TY+ L+ G
Sbjct: 357 LREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N     +++   C+   R+
Sbjct: 187 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 245

Query: 97  DKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   +++A  ++D M+  G      T+  +
Sbjct: 246 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTL 305

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +  +  D  AY  +++  C +G       +L++M    L
Sbjct: 306 IDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGL 365

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             D  TY  ++   C+ G V +   LL+ M  +G      TY  +M  
Sbjct: 366 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 49/116 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L  L + +  +  WG  E + E      L  +N L+  +C  G++     V   +
Sbjct: 91  TCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 150

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  L     +Y+ L+ G  R G ++E F L   M+  G      TY+ ++  L +
Sbjct: 151 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 206



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 88/221 (39%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KL+         + + E G+  S   F+ ++    
Sbjct: 76  CYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFC 135

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 136 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 195

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C+  ++++A  L   M+  G      T+  ++    + G    A++     
Sbjct: 196 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 255

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + +  D   + +L   L      N+A+ ++ EM+ + LK
Sbjct: 256 LSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLK 296


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 123/279 (44%), Gaps = 2/279 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   ++ L++A    +  + V  L  K  R    +   T+N + N     S +S     
Sbjct: 45  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 104

Query: 93  LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++ K G+ P      +L+   C  K+I +A+ +VD M E G+    ITF  ++  L  
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 164

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +  EA  L++ M +    P+L  Y  ++   C +G+      +L KME  K+ AD   
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 224

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           ++ ++   C+   V++A  L + M   G      TY+ ++  L   G ++ A + +    
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + I  +   F +L    +   +F EA  +  +M KR +
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 323



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 113/284 (39%), Gaps = 6/284 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  +VN      D +    LLNK            FN I ++      + D   
Sbjct: 184 QPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 243

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               ++ KG  P    Y +LI  LC   +  +A +++  M E     + +TF+ ++    
Sbjct: 244 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 303

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  +  EA  L + M +  + PD+  YN L+  +C    L     + + M  +    D  
Sbjct: 304 KEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVV 363

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVM 267
           TY+ L+ G C++ RVE+   L R M   G      TY  ++  L   G    AQ V   M
Sbjct: 364 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 423

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           V  G  +  D   +  L   L    +  +A  +   M K ++K+
Sbjct: 424 VSDG--VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 465



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 35/202 (17%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK K++++   +   M+  G     +T+  ++  L      + A  
Sbjct: 359 FPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 418

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    V PD+  Y+ LL   C  G L     V   M++ ++  D   Y  ++ G C
Sbjct: 419 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 478

Query: 220 RAGRV-----------------------------------EEAFVLLRRMVDDGQSVLYS 244
           +AG+V                                   +EA+ LL++M +DG      
Sbjct: 479 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSG 538

Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
           TY  ++ A LR G  A + + +
Sbjct: 539 TYNTLIRAHLRDGDKAASAELI 560



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 96/208 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI  L    K  EA+ +VD M + G   + +T+  +++ L +    + A  L
Sbjct: 150 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNL 209

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+  ++  D+  +N ++ + C   ++     + K+ME + +  +  TY +L+   C 
Sbjct: 210 LNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCS 269

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LL  M++   +    T+  ++ A ++ G + +A K       R I  D   
Sbjct: 270 YGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFT 329

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + SL +     +R ++A  + + M  +D
Sbjct: 330 YNSLVNGFCMHDRLDKAKQMFEFMVSKD 357



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 80/184 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI    K  K  EA ++ D M +        T++ +++      R+++A  +
Sbjct: 290 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 349

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M      PD+  YN L+  +C    +   + + ++M    L  D  TY  L+ G   
Sbjct: 350 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 409

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  + A  + ++MV DG      TY+ ++  L   G   +A++        +IKLD  +
Sbjct: 410 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 469

Query: 281 FGSL 284
           + ++
Sbjct: 470 YTTM 473



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 63/134 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LC   K+++AL V D M +    L    +  ++  + +  ++++ W L
Sbjct: 430 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 489

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V P++  YN +++  C K  L     +LKKM+E+    ++ TY+ L+    R
Sbjct: 490 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLR 549

Query: 221 AGRVEEAFVLLRRM 234
            G    +  L+R M
Sbjct: 550 DGDKAASAELIREM 563



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 99/216 (45%), Gaps = 16/216 (7%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-- 78
           R  +  G   D  T   Y  L+    H+ D +  + +  +   D       T++ + +  
Sbjct: 386 REMSHRGLVGDTVT---YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 442

Query: 79  -----TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
                 E +L V   + ++  +LD        Y T+I  +CK  K+D+   +   ++  G
Sbjct: 443 CNNGKLEKALEVFDYMQKSEIKLDI-----YIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 497

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
              + +T++ ++S L   + ++EA+ L++ MKE    P+   YN L+ A+   G+  A++
Sbjct: 498 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA 557

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            ++++M   +   DA T   LV      GR++++F+
Sbjct: 558 ELIREMRSCRFVGDASTI-GLVANMLHDGRLDKSFL 592



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 88/213 (41%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    ++ L+  + K+KK D  + + + M          T++ +++   R  ++  A
Sbjct: 42  RPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLA 101

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M ++   P +   + LL  YC    ++    ++ +M E     D  T+  L+ G
Sbjct: 102 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 161

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
                +  EA  L+ RMV  G      TY  V+  L + G    A+  +       I+ D
Sbjct: 162 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEAD 221

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             +F ++   L      ++A  + KEM  + ++
Sbjct: 222 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 254



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 69/149 (46%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+D+A+ +   M +     S + F+ +LS + + K+ +    L E M+ + +   L  YN
Sbjct: 27  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 86

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C +  ++    +L KM +        T  +L+ G C   R+ +A  L+ +MV+ 
Sbjct: 87  ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 146

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G      T+  ++  L      ++AV  V
Sbjct: 147 GYRPDTITFTTLIHGLFLHNKASEAVALV 175


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 1/167 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LCK  +I  A  ++D M + G   + IT++ +++ L +  ++++A  L
Sbjct: 368 PNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIAL 427

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGN-LTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +  MK+  + PD+   N LL     KG  L    G+ + + ++    +  TY+ ++ G C
Sbjct: 428 INKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHC 487

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G ++EA+ L  +M D G S    T+  ++ ALL  G   +A K +
Sbjct: 488 KEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLL 534



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 8/166 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  L K  K+ EA  V+ ++ +     + IT++ ++      K +  A GL
Sbjct: 271 PDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLID--GYAKHVFNAVGL 328

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M V      +PD+ +YN ++   C    +     + K+M ++ +  +  TY++L+ G C+
Sbjct: 329 MGV------TPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCK 382

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +GR+  A+ L+  M D G      TY  ++  L + G   +A+  +
Sbjct: 383 SGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALI 428



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 86/178 (48%), Gaps = 14/178 (7%)

Query: 74  NFITNTENSLSVLSDLCRTLARL-----------DKGFPRKS-AYDTLIGRLCKLKKIDE 121
           N + NT    S++  LC++  R+           D+G       Y++LI  LCK  ++D+
Sbjct: 365 NMVPNTVTYNSLIDGLCKS-GRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDK 423

Query: 122 ALRVVDIMAEGGFGLSAITFHPILS-VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           A+ +++ M + G      T + +L  +L +GKR++ A GL + + +    P++  YN ++
Sbjct: 424 AIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIII 483

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             +C +G L     +  KME+     +A T+  ++      G  ++A  LL  M+  G
Sbjct: 484 YGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARG 541



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 98/250 (39%), Gaps = 32/250 (12%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LCK K + EA  +   M+  G   + +T+  I+       ++ EA G 
Sbjct: 201 PNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGF 260

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG--- 217
           +  M    ++PD+  YN L+ A   +G +     VL  + +  L  +  TY+ L+ G   
Sbjct: 261 LNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAK 320

Query: 218 ------------------------ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
                                    C+  RVEEA  L + M          TY  ++  L
Sbjct: 321 HVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGL 380

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
            + G  + A   +     R    +   + SL + L    + ++A  ++ +M  + ++   
Sbjct: 381 CKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQ--- 437

Query: 314 KLRDYYEINV 323
              D Y +N+
Sbjct: 438 --PDMYTLNI 445



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 7/193 (3%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           N F  +     + SVLS +      L  G+ P      TLI  LC   ++ +AL   D +
Sbjct: 106 NCFCHLGQINLAFSVLSKI------LKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKL 159

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF L  +++  +++ + +      A  L+  +      P++  YN ++   C +  +
Sbjct: 160 LAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLV 219

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
           +    +  +M  + + A+  TY A++ G C  G++ EA   L  MV    +     Y  +
Sbjct: 220 SEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTL 279

Query: 250 MGALLRLGYYAQA 262
           + AL + G   +A
Sbjct: 280 VDALHKEGKVKEA 292



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 73/171 (42%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           I F+ IL    + K       L   ++   + PD    N L+  +C  G +     VL K
Sbjct: 64  IQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSK 123

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           + +     D  T   L+ G C  G+V++A     +++  G  +   +Y  ++  + ++G 
Sbjct: 124 ILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGE 183

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              A++ +    GR  + +  ++ ++   L   +  +EA  +  EM+ + +
Sbjct: 184 TRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGI 234


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 87/164 (53%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           K  ++ +I  LCKL +I++A  ++  + + GF     T+  ++   +    ++ A+ L +
Sbjct: 725 KIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRD 784

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M  + ++P++  YN L+   C  G L+    + KK+  + +  +A TY+ L+   C+ G
Sbjct: 785 TMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDG 844

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            + EAF L +RM+++G      TY+ ++  L   GY  +A+K +
Sbjct: 845 YITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLL 888



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 125/283 (44%), Gaps = 17/283 (6%)

Query: 8   PTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCF 67
           P   L P  V V + F+ S        +A +D L+ A  +   L+    + ++     C 
Sbjct: 154 PAPPLFPHLVEVYKEFSFS--------AASFDLLLRALANAGQLDGALQVFDEMRTLGCR 205

Query: 68  NTANTFNFITNTENSLSVLSDLCRTLARLDK-----GFPRKSAYDTLIGRLCKLKKIDEA 122
            +  + N I N    L+   DL  T+A  ++       P K     +    CK+K +  A
Sbjct: 206 LSMRSCNSILN---RLAQTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHA 262

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           L  V+ M + G  ++ + +H +++      +  +A  +++ +     SP++  Y  L+  
Sbjct: 263 LEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKG 322

Query: 183 YCFKGNLTATSGVLKKMEEEK-LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
           YC + N+    GV++++ + K L  D   + A++ G C+ GR+E+A  LL  MVD    V
Sbjct: 323 YCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQV 382

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
               Y  ++    +LG   +A   +    G  ++ DT  + SL
Sbjct: 383 NLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSL 425



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 96/204 (47%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           ++ +  +I   C++ ++++A R+++ M +    ++   ++ +++   +  RM EA  ++ 
Sbjct: 349 EAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILH 408

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M  + V PD  +YN L+  YC KG +         M      A   TY+AL+ G C  G
Sbjct: 409 EMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLG 468

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
            +++A  L   M+  G +    + + ++    + G   +A+        R +  +T  F 
Sbjct: 469 SIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFN 528

Query: 283 SLGSKLIGLERFNEANFILKEMNK 306
           ++ + L  +ER  EA  ++ +M +
Sbjct: 529 TVINGLCKIERMPEAEELVDKMKQ 552



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 7/177 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E++ ++L+DL       DKGF   +  Y +LI        +D A  + D M   G   + 
Sbjct: 742 EDAKNLLADL------KDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNI 795

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T++ ++  L +   +  A  L + +    +SP+   YN L+  +C  G +T    + ++
Sbjct: 796 VTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQR 855

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           M EE +     TY  L+ G C  G +EEA  LL +M+++     Y TY  ++   +R
Sbjct: 856 MIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVR 912



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 121/282 (42%), Gaps = 8/282 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR- 91
           P +  Y+ LV+    +  +       N   R+    T  T+N +     SL  + D  R 
Sbjct: 417 PDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRL 476

Query: 92  TLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
               L KG  P + +  TL+    K  K ++AL +       G   +  TF+ +++ L +
Sbjct: 477 WFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCK 536

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            +RM EA  L++ MK+ R  PD+  Y  L + YC  G++   S +L ++E          
Sbjct: 537 IERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEF 596

Query: 211 YDALVLG---ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           +++L+ G   A + G+V +   +L  M + G S     Y  ++    + G    A    +
Sbjct: 597 FNSLITGHFIAKQHGKVND---ILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYL 653

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               + +  +  +  SL S      +F+EAN +L+ +   D+
Sbjct: 654 EMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDM 695



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 59/125 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LCK  ++  A+ +   +   G   +AIT++ ++    +   + EA+ L
Sbjct: 793 PNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKL 852

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  + P +  Y+ L+   C +G +     +L +M E  +  +  TY  L+ G  R
Sbjct: 853 KQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVR 912

Query: 221 AGRVE 225
              V+
Sbjct: 913 CESVD 917



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 66/148 (44%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           +I +    +D +A G    + I ++ ++  L +  R+E+A  L+  +K+     D   Y+
Sbjct: 705 EIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYS 764

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+      G +     +   M    L  +  TY++L+ G C++G +  A  L +++   
Sbjct: 765 SLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTK 824

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           G S    TY  ++    + GY  +A K 
Sbjct: 825 GISPNAITYNTLIDKHCKDGYITEAFKL 852



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 26/191 (13%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  LI   CK   +  A  +   M E G   +      ++S   R  + +EA  +
Sbjct: 627 PNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLV 686

Query: 161 MEVMKEIRVSPDLTA--------------------------YNYLLTAYCFKGNLTATSG 194
           ++ +    + PD++A                          +N ++   C  G +     
Sbjct: 687 LQNLVGTDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKN 746

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +L  ++++   AD  TY +L+ G   +G V+ AF L   M+  G +    TY  ++  L 
Sbjct: 747 LLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLC 806

Query: 255 RLGYYAQAVKF 265
           + G  ++AV  
Sbjct: 807 KSGELSRAVSL 817



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 2/183 (1%)

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +V++  E  F  SA +F  +L  L    +++ A  + + M+ +     + + N +L   
Sbjct: 161 HLVEVYKE--FSFSAASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRL 218

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
              G+L AT  V ++M+      D  T   +    C+   V  A   +  M   G  V  
Sbjct: 219 AQTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNL 278

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
             Y  VM     +G    A + +    GR    +   +  L       +   EA  +++E
Sbjct: 279 VAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQE 338

Query: 304 MNK 306
           + K
Sbjct: 339 IRK 341


>gi|413936133|gb|AFW70684.1| hypothetical protein ZEAMMB73_229858 [Zea mays]
          Length = 375

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 111/238 (46%), Gaps = 4/238 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLC 90
           EP +  Y+ +++A   E D++  R LLN   +R C  NT N +N +     S+    D  
Sbjct: 7   EPNNVTYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVN-YNTVLKGFCSIERWVDAN 65

Query: 91  RTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
             L  +  +   P ++  +  I  LC+   + +  R ++ M++ G   + +T++ I+  L
Sbjct: 66  EILDEVVSENCPPNEATLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTNVVTYNAIIGGL 125

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                ++ A  L+  M+     PD+  YN +L   C          ++ KM +     D 
Sbjct: 126 CEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLRDN 185

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            T++ ++   C+ G + +A  + ++M + G +   +TY+ ++G L++     QA++ +
Sbjct: 186 STFNTIISFWCQKGLILQALEVFKQMPEKGCNPNSTTYSTIIGGLVKASKMEQALELL 243



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 77/186 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  +C+   +D+A  +++ +       + + ++ +L      +R  +A  +
Sbjct: 8   PNNVTYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLKGFCSIERWVDANEI 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ +      P+    N  +   C KG L   +  L+KM +     +  TY+A++ G C 
Sbjct: 68  LDEVVSENCPPNEATLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTNVVTYNAIIGGLCE 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G V+ A  LL  M   G      TY  V+  L     +  A + ++     D   D   
Sbjct: 128 QGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLRDNST 187

Query: 281 FGSLGS 286
           F ++ S
Sbjct: 188 FNTIIS 193



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 1/172 (0%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
            S ++T+I   C+   I +AL V   M E G   ++ T+  I+  L +  +ME+A  L+ 
Sbjct: 185 NSTFNTIISFWCQKGLILQALEVFKQMPEKGCNPNSTTYSTIIGGLVKASKMEQALELLN 244

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M     + D   Y  L  +   +  +     V+ K+++  +      Y+ ++LG CR G
Sbjct: 245 EMANKGFNTD-KMYLVLTKSLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNG 303

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   A  +L  MV  G     STY  ++  L   GY  +A + +     RD+
Sbjct: 304 KTNYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYLKEARELLSRLCSRDV 355



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 81/194 (41%), Gaps = 5/194 (2%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   + +T++ I+  + R   +++A  L+  +      P+   YN +L  +C    
Sbjct: 1   MRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLKGFCSIER 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
               + +L ++  E    +  T +  +   CR G +++    L +M   G +    TY  
Sbjct: 61  WVDANEILDEVVSENCPPNEATLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTNVVTYNA 120

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++G L   G    A++ +        K D   + ++   L   +R+ +A  ++ +M++ D
Sbjct: 121 IIGGLCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQND 180

Query: 309 LKMGFKLRDYYEIN 322
                +LRD    N
Sbjct: 181 -----RLRDNSTFN 189



 Score = 37.4 bits (85), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 39/191 (20%)

Query: 10  KFLIPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFN 68
           K LI Q++ V +   + G  P+  T S     LV A+  E+ LE    LLN+ A      
Sbjct: 198 KGLILQALEVFKQMPEKGCNPNSTTYSTIIGGLVKASKMEQALE----LLNEMA------ 247

Query: 69  TANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDI 128
                                       +KGF     Y  L   L K  KI+E ++VV  
Sbjct: 248 ----------------------------NKGFNTDKMYLVLTKSLNKEDKIEEVVQVVHK 279

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           + + G     + ++ +L  L R  +   A  ++  M      PD + Y  L+    ++G 
Sbjct: 280 LQDSGISPQTVLYNTVLLGLCRNGKTNYAIDVLADMVSCGCMPDESTYIILIEGLFYEGY 339

Query: 189 LTATSGVLKKM 199
           L     +L ++
Sbjct: 340 LKEARELLSRL 350


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 5/265 (1%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + Q++ +     K G  PD  T   Y+ L+N    E  L+     LN      C     T
Sbjct: 260 VGQAMKLLDEMRKKGCKPDVVT---YNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVIT 316

Query: 73  FNFITNTENSLSVLSDLCRTLA-RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
            N I  +  S     D  R LA  L KG  P    ++ LI  LC+ + +  A+ V++ M 
Sbjct: 317 HNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMP 376

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           + G   ++++++P+L    + K+M+ A   +E+M      PD+  YN LLTA C  G   
Sbjct: 377 KHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKAD 436

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
           A   +L ++  +       TY+ ++ G  + G+ E A  LL  M   G      TY+ ++
Sbjct: 437 AAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLL 496

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIK 275
             L   G   +A+K      G  IK
Sbjct: 497 RGLGCEGKVDEAIKIFHDMEGLSIK 521



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y+TL+  LCK  K D A+ +++ ++  G     IT++ ++  LT+  + E A  
Sbjct: 416 YPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAE 475

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+E M+   + PD+  Y+ LL     +G +     +   ME   +   A TY+A++LG C
Sbjct: 476 LLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLC 535

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +A +   A   L  MV+ G     +TY
Sbjct: 536 KAQQTSRAIDFLAYMVEKGCKPTKATY 562



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
             P    Y+ LIG  CK  +ID+AL+V++ M+        +T++ IL  L    +++EA 
Sbjct: 173 AVPDVITYNVLIGGYCKSGEIDKALQVLERMS---VAPDVVTYNTILRSLCDSGKLKEAM 229

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            +++   +    PD+  Y  L+ A C    +     +L +M ++    D  TY+ L+ G 
Sbjct: 230 EVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGI 289

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           C+ GR++EA   L  M   G      T+  ++ ++   G +  A + +
Sbjct: 290 CKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLL 337



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   A  +LI   C+  K  +A R+++I+   G     IT++ ++    +   +++A  
Sbjct: 139 IPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKA-- 196

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            ++V++ + V+PD+  YN +L + C  G L     VL +  + +   D  TY  L+   C
Sbjct: 197 -LQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATC 255

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
               V +A  LL  M   G      TY  ++  + + G   +A+KF+
Sbjct: 256 NDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFL 302



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 3/193 (1%)

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           +L +  +++E L+ ++ M   G     I    ++    R  +  +A  +ME+++     P
Sbjct: 116 KLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVP 175

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           D+  YN L+  YC  G +     VL++M    +  D  TY+ ++   C +G+++EA  +L
Sbjct: 176 DVITYNVLIGGYCKSGEIDKALQVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVL 232

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
            R +         TY  ++ A        QA+K +     +  K D   +  L + +   
Sbjct: 233 DRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKE 292

Query: 292 ERFNEANFILKEM 304
            R +EA   L  M
Sbjct: 293 GRLDEAIKFLNNM 305



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 70/163 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T++  LC   K+ EA+ V+D   +       IT+  ++        + +A  L
Sbjct: 207 PDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKL 266

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++    PD+  YN L+   C +G L      L  M       +  T++ ++   C 
Sbjct: 267 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCS 326

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR  +A  LL  M+  G S    T+  ++  L R     +A+
Sbjct: 327 TGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAI 369



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/208 (18%), Positives = 89/208 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y  LI   C    + +A++++D M + G     +T++ +++ + +  R++EA  
Sbjct: 241 YPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIK 300

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +  M      P++  +N +L + C  G       +L  M  +       T++ L+   C
Sbjct: 301 FLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLC 360

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R   +  A  +L +M   G      +Y  ++    +     +A++++ +   R    D  
Sbjct: 361 RKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIV 420

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
            + +L + L    + + A  IL +++ +
Sbjct: 421 TYNTLLTALCKDGKADAAVEILNQLSSK 448



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 25/227 (11%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLE-TVRYLLNKR 61
           L+  L  K L+ +++ V     K G  P+   S  Y+ L++    E+ ++  + YL    
Sbjct: 355 LINFLCRKRLLGRAIDVLEKMPKHGCMPN---SLSYNPLLHGFCQEKKMDRAIEYLEIMV 411

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCR---------TLARLD-KGF-PRKSAYDTLI 110
           +R C +    T+N         ++L+ LC+          L +L  KG  P    Y+T+I
Sbjct: 412 SRGC-YPDIVTYN---------TLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVI 461

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
             L K+ K + A  +++ M   G     IT+  +L  L    +++EA  +   M+ + + 
Sbjct: 462 DGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIK 521

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           P    YN ++   C     +     L  M E+       TY  L+ G
Sbjct: 522 PSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEG 568


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 93/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P      +L+   C  K+I EA+ +VD M   G+  + +TF+ ++  L    +  EA  L
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M      PDL  Y  ++   C +G+      +L KME+ KL      Y+ ++ G C+
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +++A  L + M   G      TY+ ++  L   G ++ A + +     R I  D   
Sbjct: 269 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 328

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F +L    +   +  EA  +  EM KR +
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSI 357



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK K+++E + V   M++ G   + +T++ ++  L +    + A  
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    V P++  YN LL   C  G L     V + ++  K+     TY+ ++ G C
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +AG+VE+ + L   +   G       Y  ++    R G   +A
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T+I  LCK K +D+AL +   M   G   + +T+  ++S L    R  +A  L+  M 
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E +++PD+  ++ L+ A+  +G L     +  +M +  +     TY +L+ G C   R++
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 226 EAFVLLRRMV 235
           EA  +   MV
Sbjct: 379 EAKQMFEFMV 388



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 2/228 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  +VN      D +    LLNK  +         +N I +       + D   
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALN 277

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               ++ KG  P    Y +LI  LC   +  +A R++  M E        TF  ++    
Sbjct: 278 LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV 337

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  ++ EA  L + M +  + P +  Y+ L+  +C    L     + + M  +    D  
Sbjct: 338 KEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 397

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           TY+ L+ G C+  RVEE   + R M   G      TY  ++  L + G
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 69/134 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  LCK  K+++A+ V + +       +  T++ ++  + +  ++E+ W L
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V PD+ AYN +++ +C KG+      + K+M+E+    ++  Y+ L+    R
Sbjct: 524 FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 583

Query: 221 AGRVEEAFVLLRRM 234
            G  E +  L++ M
Sbjct: 584 DGDREASAELIKEM 597



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 17/250 (6%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
           +P+   Y  L+N       L+  + +        CF    T+N +          E  + 
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417

Query: 85  VLSDLCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           V  ++ +      +G    +  Y+ LI  L +    D A  +   M   G   + +T++ 
Sbjct: 418 VFREMSQ------RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +L  L +  ++E+A  + E ++  ++ P +  YN ++   C  G +     +   +  + 
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG---YYA 260
           +  D   Y+ ++ G CR G  EEA  L + M +DG       Y  ++ A LR G     A
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591

Query: 261 QAVKFVMVCG 270
           + +K +  CG
Sbjct: 592 ELIKEMRSCG 601



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+ EA ++ D M +     S +T+  +++      R++EA  +
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M      PD+  YN L+  +C    +     V ++M +  L  +  TY+ L+ G  +
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           AG  + A  + + MV DG      TY  ++  L + G   +A+
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 486



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 3/230 (1%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           N   V+  L   +  L  G P     Y  LI   C+  ++  AL V+  M + G+  + +
Sbjct: 95  NKFDVVISLGEQMQNL--GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIV 152

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L+     KR+ EA  L++ M      P+   +N L+         +    ++ +M
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM 212

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             +    D  TY  +V G C+ G  + AF LL +M           Y  ++  L +  + 
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 272

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             A+        + I+ +   + SL S L    R+++A+ +L +M +R +
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 322



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 93/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI  L    K  EA+ ++D M   G     +T+  +++ L +    + A+ L
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNL 243

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++ ++ P +  YN ++   C   ++     + K+ME + +  +  TY +L+   C 
Sbjct: 244 LNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN 303

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LL  M++   +    T++ ++ A ++ G   +A K       R I      
Sbjct: 304 YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVT 363

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL +     +R +EA  + + M
Sbjct: 364 YSSLINGFCMHDRLDEAKQMFEFM 387



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 68/160 (42%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           + FP    +  L+  + K+ K D  + + + M   G   +  T+  +++   R  ++  A
Sbjct: 76  RPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLA 135

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++  M ++   P++   + LL  YC    ++    ++ +M       +  T++ L+ G
Sbjct: 136 LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHG 195

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
                +  EA  L+ RMV  G      TY  V+  L + G
Sbjct: 196 LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  +CK  K+++   +   ++  G     + ++ ++S   R    EEA  L
Sbjct: 499 PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADAL 558

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + MKE    P+   YN L+ A    G+  A++ ++K+M       DA T   LV     
Sbjct: 559 FKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLH 617

Query: 221 AGRVEEAFV 229
            GR++++F+
Sbjct: 618 DGRLDKSFL 626



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 3/134 (2%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+D+A+ +   M +     S I F  +LS + +  + +    L E M+ + +  +   Y+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C +  L     VL KM +     +  T  +L+ G C + R+ EA  L+ +M   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 238 G---QSVLYSTYAH 248
           G    +V ++T  H
Sbjct: 181 GYQPNTVTFNTLIH 194


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 130/315 (41%), Gaps = 29/315 (9%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           + L+R++  +FL P   L+T               A   +L  +  HE   E    +L K
Sbjct: 407 LRLIREMLARFLKPNDALMT---------------ACIQELCKSGKHEEAAEIWFQVLGK 451

Query: 61  RARDCCFNTANTFNFI------TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLC 114
                  N A +   I       N + +  VL  +  +   LD+       Y+ +I   C
Sbjct: 452 GLG---VNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDR-----ITYNIMIQGCC 503

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           K  K+DEA+++ D M + GF     TF+  L       ++EE   L++ MK   + PD+ 
Sbjct: 504 KASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIV 563

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            Y  ++  YC   ++   +  L ++ +  L  +A  Y+AL+ G  R G + +A  +L  M
Sbjct: 564 TYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTM 623

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
             +G      TY  +M  +   G   +       C  +DI+L    +  +      + + 
Sbjct: 624 KYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKI 683

Query: 295 NEANFILKEMNKRDL 309
           +EA    KEM+ R +
Sbjct: 684 DEAVMYFKEMHSRGI 698



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 77/155 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCK  +++EA R+   M EG    S +TF  ++S L RG++  E   +
Sbjct: 244 PTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAV 303

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+   ++P+   YN ++  +C KG+ +    +  +M  + +     TY+ +    C+
Sbjct: 304 LQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCK 363

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G +E A  +L  M+  G  V  S +  V+   LR
Sbjct: 364 EGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLR 398



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 5/213 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LC+  +ID A  ++  +   G   + +T++ ++  L +  R+EEA+ L
Sbjct: 209 PDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRL 268

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E RV P +  +  L++             VL++M+   +  +   Y+ ++   CR
Sbjct: 269 KGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCR 328

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
            G   EA  L   MV  G      TY  +  AL + G    A K +  M+  G  + +  
Sbjct: 329 KGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAG--MMVHC 386

Query: 279 ELFGS-LGSKLIGLERFNEANFILKEMNKRDLK 310
            LF S +   L G  R +    +++EM  R LK
Sbjct: 387 SLFNSVVAWHLRGTGRLDLVLRLIREMLARFLK 419



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 2/196 (1%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN   +T  +L  + ++   L ++  +G  P    Y T+I   CK K + +A   +  +
Sbjct: 529 TFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTEL 588

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            + G   +A+ ++ ++    R   + +A G+++ MK   + P    YN L+   C  G +
Sbjct: 589 MKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLV 648

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                V  +   + +      Y  ++ G C+ G+++EA +  + M   G      TY  +
Sbjct: 649 EEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTL 708

Query: 250 MGALLRLGYYAQAVKF 265
           M A  + G   +A K 
Sbjct: 709 MFAYSKSGNKEEASKL 724



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I   CK+ KIDEA+     M   G   + +T+  ++   ++    EEA  L + M 
Sbjct: 670 YTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMV 729

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            + + PD  +YN L++ +C   +L        +M  + L  D  +Y+A V G
Sbjct: 730 SLGIVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDG 781



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V+PD+  Y  ++ A C  G + A   +L ++    +     TY+ L+   C++GRVEEAF
Sbjct: 207 VAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAF 266

Query: 229 VLLRRMVD 236
            L  RMV+
Sbjct: 267 RLKGRMVE 274



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 15/233 (6%)

Query: 98  KGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +GF   P +  Y+ +IG  C+     EAL++ D M   G   + +T++ I   L +   M
Sbjct: 308 QGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEM 367

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E A  +++ M    +    + +N ++ A+  +G  T    ++ ++  E L    +  DAL
Sbjct: 368 EHAEKILDEMLLAGMMVHCSLFNSVV-AWHLRG--TGRLDLVLRLIREMLARFLKPNDAL 424

Query: 215 VLGA----CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           +       C++G+ EEA  +  +++  G  V  +T   ++  L +     +A K +    
Sbjct: 425 MTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMV 484

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
              ++LD   +  +        + +EA  +  +M KR    GFK  D +  N+
Sbjct: 485 NSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKR----GFK-PDLFTFNI 532



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 59/139 (42%)

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           ++   N L+   C   N+   + VLK M    +  D  TY+ ++ G C+A +++EA  L 
Sbjct: 456 NVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLR 515

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
             M+  G      T+   +     LG   + +  +       +K D   +G++       
Sbjct: 516 DDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKA 575

Query: 292 ERFNEANFILKEMNKRDLK 310
           +  ++AN  L E+ K  L+
Sbjct: 576 KDMHKANEYLTELMKNGLR 594


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 93/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P      +L+   C  K+I EA+ +VD M   G+  + +TF+ ++  L    +  EA  L
Sbjct: 763 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 822

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M      PDL  Y  ++   C +G+      +L KME+ KL      Y+ ++ G C+
Sbjct: 823 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 882

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +++A  L + M   G      TY+ ++  L   G ++ A + +     R I  D   
Sbjct: 883 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 942

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F +L    +   +  EA  +  EM KR +
Sbjct: 943 FSALIDAFVKEGKLVEAEKLYDEMVKRSI 971



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 76/153 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+TLI   CK K++++ +++   M++ G   + +T++ ++    +   +++A      M
Sbjct: 435 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 494

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               +SPD+  YN LL   C  G L     + + M++ ++  D  TY  ++ G C+ G+V
Sbjct: 495 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 554

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           EEA+ L   +   G      TY  +M  L   G
Sbjct: 555 EEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 587



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 13/240 (5%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           +++  LC+T  R++  F            P    Y  L+  LC   +  +A R++  M +
Sbjct: 298 AIIDSLCKT-KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 356

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
                + IT+  +L    +  ++ EA  L E M  + + PD+  Y+ L+   C    +  
Sbjct: 357 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDE 416

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
            + +   M  +   AD  +Y+ L+ G C+A RVE+   L R M   G      TY  ++ 
Sbjct: 417 ANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 476

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
              + G   +A +F        I  D   +  L   L       +A  I ++M KR++ +
Sbjct: 477 GFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 536



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%)

Query: 100  FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            FP    Y+TLI   CK K+++E + V   M++ G   + +T++ ++  L +    + A  
Sbjct: 1007 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 1066

Query: 160  LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            + + M    V P++  YN LL   C  G L     V + ++  K+     TY+ ++ G C
Sbjct: 1067 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 1126

Query: 220  RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            +AG+VE+ + L   +   G       Y  ++    R G   +A
Sbjct: 1127 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 1169



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 90/194 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++ +I   C   ++  AL ++  M + G+    +T   +++   R  R+ +A  L++ M
Sbjct: 225 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 284

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            EI   PD+ AYN ++ + C    +       K++E + +  +  TY ALV G C + R 
Sbjct: 285 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 344

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A  LL  M+    +    TY+ ++ A ++ G   +A +         I  D   + SL
Sbjct: 345 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 404

Query: 285 GSKLIGLERFNEAN 298
            + L   +R +EAN
Sbjct: 405 INGLCLHDRIDEAN 418



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%)

Query: 106  YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
            Y+T+I  LCK K +D+AL +   M   G   + +T+  ++S L    R  +A  L+  M 
Sbjct: 873  YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 932

Query: 166  EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            E +++PD+  ++ L+ A+  +G L     +  +M +  +     TY +L+ G C   R++
Sbjct: 933  ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 992

Query: 226  EAFVLLRRMV 235
            EA  +   MV
Sbjct: 993  EAKQMFEFMV 1002



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 69/134 (51%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P    Y+TL+  LCK  K+++A+ V + +       +  T++ ++  + +  ++E+ W L
Sbjct: 1078 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 1137

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
               +    V PD+ AYN +++ +C KG+      + K+M+E+    ++  Y+ L+    R
Sbjct: 1138 FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 1197

Query: 221  AGRVEEAFVLLRRM 234
             G  E +  L++ M
Sbjct: 1198 DGDREASAELIKEM 1211



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 108/244 (44%), Gaps = 2/244 (0%)

Query: 68  NTANTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRV 125
           N   TFN + N       +S     L ++ K G+ P +    +L+   C+  ++ +A+ +
Sbjct: 221 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 280

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           VD M E G+    + ++ I+  L + KR+ +A+   + ++   + P++  Y  L+   C 
Sbjct: 281 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 340

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
               +  + +L  M ++K+  +  TY AL+    + G+V EA  L   MV         T
Sbjct: 341 SSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 400

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y+ ++  L       +A +   +   +    D   + +L +     +R  +   + +EM+
Sbjct: 401 YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 460

Query: 306 KRDL 309
           +R L
Sbjct: 461 QRGL 464



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 2/228 (0%)

Query: 32   EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
            +P    Y  +VN      D +    LLNK  +         +N I +       + D   
Sbjct: 832  QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALN 891

Query: 92   TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                ++ KG  P    Y +LI  LC   +  +A R++  M E        TF  ++    
Sbjct: 892  LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV 951

Query: 150  RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
            +  ++ EA  L + M +  + P +  Y+ L+  +C    L     + + M  +    D  
Sbjct: 952  KEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 1011

Query: 210  TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            TY+ L+ G C+  RVEE   + R M   G      TY  ++  L + G
Sbjct: 1012 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 1059



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 17/250 (6%)

Query: 32   EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
            +P+   Y  L+N       L+  + +        CF    T+N +          E  + 
Sbjct: 972  DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 1031

Query: 85   VLSDLCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
            V  ++ +      +G    +  Y+ LI  L +    D A  +   M   G   + +T++ 
Sbjct: 1032 VFREMSQ------RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 1085

Query: 144  ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
            +L  L +  ++E+A  + E ++  ++ P +  YN ++   C  G +     +   +  + 
Sbjct: 1086 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 1145

Query: 204  LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG---YYA 260
            +  D   Y+ ++ G CR G  EEA  L + M +DG       Y  ++ A LR G     A
Sbjct: 1146 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 1205

Query: 261  QAVKFVMVCG 270
            + +K +  CG
Sbjct: 1206 ELIKEMRSCG 1215



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P    +  LI    K  K+ EA ++ D M +     S +T+  +++      R++EA  +
Sbjct: 938  PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 997

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             E M      PD+  YN L+  +C    +     V ++M +  L  +  TY+ L+ G  +
Sbjct: 998  FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 1057

Query: 221  AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            AG  + A  + + MV DG      TY  ++  L + G   +A+
Sbjct: 1058 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 1100



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 1/212 (0%)

Query: 99  GFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           G P     Y  LI   C+  ++  AL V+  M + G+  + +T   +L+     KR+ EA
Sbjct: 725 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 784

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L++ M      P+   +N L+         +    ++ +M  +    D  TY  +V G
Sbjct: 785 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNG 844

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+ G  + AF LL +M           Y  ++  L +  +   A+        + I+ +
Sbjct: 845 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 904

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              + SL S L    R+++A+ +L +M +R +
Sbjct: 905 VVTYSSLISCLCNYGRWSDASRLLSDMIERKI 936



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 93/204 (45%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P    ++TLI  L    K  EA+ ++D M   G     +T+  +++ L +    + A+ L
Sbjct: 798  PNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNL 857

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +  M++ ++ P +  YN ++   C   ++     + K+ME + +  +  TY +L+   C 
Sbjct: 858  LNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN 917

Query: 221  AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             GR  +A  LL  M++   +    T++ ++ A ++ G   +A K       R I      
Sbjct: 918  YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVT 977

Query: 281  FGSLGSKLIGLERFNEANFILKEM 304
            + SL +     +R +EA  + + M
Sbjct: 978  YSSLINGFCMHDRLDEAKQMFEFM 1001



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 90/192 (46%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+++A+ +   M +     S + F+ +LS + + K+ +    L + M+ + +  DL  +N
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++  +C    ++    +L KM +     D  T  +LV G CR  RV +A  L+ +MV+ 
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G       Y  ++ +L +      A  F      + I+ +   + +L + L    R+++A
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 347

Query: 298 NFILKEMNKRDL 309
             +L +M K+ +
Sbjct: 348 ARLLSDMIKKKI 359



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 2/208 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+  + N   + S  SD  R L+ +   K  P    Y  L+    K  K+ EA  + + M
Sbjct: 330 TYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 389

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
                    +T+  +++ L    R++EA  + ++M       D+ +YN L+  +C    +
Sbjct: 390 VRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRV 449

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                + ++M +  L ++  TY+ L+ G  +AG V++A     +M   G S    TY  +
Sbjct: 450 EDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNIL 509

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           +G L   G   +A+        R++ LD
Sbjct: 510 LGGLCDNGELEKALVIFEDMQKREMDLD 537



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 68/160 (42%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           + FP    +  L+  + K+ K D  + + + M   G   +  T+  +++   R  ++  A
Sbjct: 690 RPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLA 749

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++  M ++   P++   + LL  YC    ++    ++ +M       +  T++ L+ G
Sbjct: 750 LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHG 809

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
                +  EA  L+ RMV  G      TY  V+  L + G
Sbjct: 810 LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 849



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 8/171 (4%)

Query: 85  VLSDLCRTLARLDKGFPRKSAYD--TLIGR--LCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           + S +C+    L + F  K++YD    + R  L +LK +D+A+ +   M +     S I 
Sbjct: 639 IKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELK-LDDAVALFGEMVKSRPFPSIIE 697

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  +LS + +  + +    L E M+ + +  +   Y+ L+  +C +  L     VL KM 
Sbjct: 698 FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMM 757

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           +     +  T  +L+ G C + R+ EA  L+ +M   G    +V ++T  H
Sbjct: 758 KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIH 808



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 5/224 (2%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +++ + SD+ ++     + FP    ++ L+  + KLKK D  + +   M   G      T
Sbjct: 171 DAIDLFSDMVKS-----RPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYT 225

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ +++      ++  A  ++  M ++   PD      L+  +C +  ++    ++ KM 
Sbjct: 226 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 285

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E     D   Y+A++   C+  RV +AF   + +   G      TY  ++  L     ++
Sbjct: 286 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 345

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            A + +     + I  +   + +L    +   +  EA  + +EM
Sbjct: 346 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 389



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P    Y+ +I  +CK  K+++   +   ++  G     + ++ ++S   R    EEA  L
Sbjct: 1113 PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADAL 1172

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             + MKE    P+   YN L+ A    G+  A++ ++K+M       DA T   LV     
Sbjct: 1173 FKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLH 1231

Query: 221  AGRVEEAFV 229
             GR++++F+
Sbjct: 1232 DGRLDKSFL 1240


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P    Y +LI  LC   K D+A  ++  M + G  L+ I F+ I+    +  R+
Sbjct: 438 IDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 497

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E+  L ++M  I V PD+  YN L+   C  G +   + +L  M    +  D  TY  L
Sbjct: 498 IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTL 557

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G CR  R+++A  L + MV  G S    TY  ++  L  
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 598



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 5/260 (1%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PD  T   Y  ++ A    + ++    +LN   ++       T+N I +   S    
Sbjct: 231 GILPDVVT---YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 287

Query: 87  SDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +   TL ++  D   P    Y +L+  LCK  +  EA ++ D M + G      T+  +
Sbjct: 288 KEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTL 347

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L        + E   L+++M    + PD   +N L+ AY  +  +     V  KM +  L
Sbjct: 348 LQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +   Y  ++   C++G V++A +   +M+D+G +     Y  ++  L     + +A +
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 265 FVMVCGGRDIKLDTELFGSL 284
            ++    R I L+T  F S+
Sbjct: 468 LILEMLDRGICLNTIFFNSI 487



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 12/216 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T++    K    D+A      M + G     +T+  I++ L + + M++A  +
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V PD   YN +L  YC  G      G LKKM  + +  +  TY +L+   C+
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCK 318

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM------GALLRLGYYAQAVKFVMVCGGRDI 274
            GR  EA  +   M   G     +TY  ++      GAL+ +     A+  +MV  G  I
Sbjct: 319 NGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEM----HALLDLMVRNG--I 372

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + D  +F  L       E+ ++A  +  +M +  L 
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLN 408



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 3/188 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEE 156
            P   +Y+ L+  LC   +  EAL ++ +MA+   GG     ++++ +L+   +    ++
Sbjct: 160 IPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDK 219

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+     M +  + PD+  Y+ ++ A C    +     VL  M +  +  D  TY++++ 
Sbjct: 220 AYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 279

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C +G+ +EA   L++M  DG      TY+ +M  L + G   +A K       R ++ 
Sbjct: 280 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 339

Query: 277 DTELFGSL 284
           D   + +L
Sbjct: 340 DIATYRTL 347



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ D+M   G     IT++ ++      
Sbjct: 470 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLA 529

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + V PD+  Y  L+  YC    +     + K+M    +  +  TY
Sbjct: 530 GKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 589

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G     R   A  L   +   G  +  STY  ++  L +     +A++       
Sbjct: 590 NIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 649

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D++L+T  F  +   L+   R +EA
Sbjct: 650 TDLQLETRTFNIMIGALLKCGRMDEA 675



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 16/251 (6%)

Query: 76  ITNTENSLSVLSDLCRTLARLDKGFP----------RKSA--YDTLIGRLCKLKKIDEAL 123
           +T T ++ ++L   C    RLD GF           R  A  +  L+  LC  K+  +A+
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 124 RVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR---VSPDLTAYNYL 179
            +V   M E G      +++ +L  L    R +EA  L+ +M + R     PD+ +YN +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           L  +  +G+         +M +  +  D  TY +++   C+A  +++A  +L  MV +G 
Sbjct: 208 LNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 267

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
                TY  ++      G   +A+  +       ++ +   + SL + L    R  EA  
Sbjct: 268 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK 327

Query: 300 ILKEMNKRDLK 310
           I   M KR L+
Sbjct: 328 IFDSMTKRGLE 338



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 90/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI    K +K+D+A+ V   M + G   + + +  ++ VL +   +++A   
Sbjct: 374 PDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLY 433

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  ++P++  Y  L+   C          ++ +M +  +  +   +++++   C+
Sbjct: 434 FEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCK 493

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY  ++      G   +A K +       +K D   
Sbjct: 494 EGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVT 553

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +G+L +    + R ++A  + KEM
Sbjct: 554 YGTLINGYCRVSRMDDALALFKEM 577



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 79/189 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   C   K+DEA +++  M   G     +T+  +++   R  RM++A  L
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALAL 573

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    VSP++  YN +L          A   +   + +     +  TY+ ++ G C+
Sbjct: 574 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCK 633

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
               +EA  + + +      +   T+  ++GALL+ G   +A           +  D   
Sbjct: 634 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRT 693

Query: 281 FGSLGSKLI 289
           +  +   LI
Sbjct: 694 YSLMAENLI 702



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 1/144 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK    DEALR+   +      L   TF+ ++  L +  RM+EA  L   
Sbjct: 622 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAA 681

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
                + PD+  Y+ +      +G+L     +   MEE    AD+R  +++V    + G 
Sbjct: 682 HSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGD 741

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYA 247
           +  A   L  M+D+    L ++ A
Sbjct: 742 ITRAGTYL-FMIDEKHFSLEASTA 764


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 135/303 (44%), Gaps = 15/303 (4%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           ++LR L     + Q++ V     +   +PD  T   Y  L+ A   +  +     LL++ 
Sbjct: 209 TILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT---YTILIEATCRDSGVGQAMKLLDEM 265

Query: 62  ARDCCFNTANTFNFITNT-------ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLC 114
               C     T+N + N        + ++  L+D+  +  +     P    ++ ++  +C
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQ-----PNVITHNIILRSMC 320

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
              +  +A +++  M   GF  S +TF+ +++ L R   +  A  ++E M +    P+  
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSL 380

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +YN LL  +C +  +      L++M       D  TY+ ++   C+ G+VE+A  +L ++
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
              G S +  TY  V+  L + G   +A+K +     +D+K DT  + SL   L    + 
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500

Query: 295 NEA 297
           +EA
Sbjct: 501 DEA 503



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 17/212 (8%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLC 114
           F++AN+ +F+     S + L  L RT   L++GF            P      TLI   C
Sbjct: 91  FSSANS-SFVLEDVESNNHLRQLVRT-GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFC 148

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           ++ K  +A ++++++   G     IT++ ++S   +   +  A   + V+  + VSPD+ 
Sbjct: 149 RMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNA---LSVLDRMSVSPDVV 205

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            YN +L + C  G L     VL +M +     D  TY  L+   CR   V +A  LL  M
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEM 265

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            D G +    TY  ++  + + G   +A+KF+
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I   CK  +I+ AL V+D M+        +T++ IL  L    ++++A  +
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +    PD+  Y  L+ A C    +     +L +M +     D  TY+ LV G C+
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            GR++EA   L  M   G      T+  ++ ++   G +  A K +
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 2/198 (1%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN + N      +L      L ++ K    P   +Y+ L+   CK KK+D A+  ++ M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G     +T++ +L+ L +  ++E+A  ++  +     SP L  YN ++      G  
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +L +M  + L  D  TY +LV G  R G+V+EA          G      T+  +
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSI 525

Query: 250 MGALLRLGYYAQAVKFVM 267
           M  L +     +A+ F++
Sbjct: 526 MLGLCKTRQTDRAIDFLV 543



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 8/186 (4%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           N+LSVL  +  +        P    Y+T++  LC   K+ +A+ V+D M +       IT
Sbjct: 190 NALSVLDRMSVS--------PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  ++    R   + +A  L++ M++   +PD+  YN L+   C +G L      L  M 
Sbjct: 242 YTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 301

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
                 +  T++ ++   C  GR  +A  LL  M+  G S    T+  ++  L R G   
Sbjct: 302 SSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLG 361

Query: 261 QAVKFV 266
           +A+  +
Sbjct: 362 RAIDIL 367



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 83/167 (49%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y+T++  LCK  K+++A+ +++ ++  G     IT++ ++  L +  +  +A  
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M+   + PD   Y+ L+     +G +        + E   +  +A T+++++LG C
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLC 530

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  + + A   L  M++ G     ++Y  ++  L   G   +A++ +
Sbjct: 531 KTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELL 577


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  +   M    +SPDL  YN L+   C KG+L     +  +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +
Sbjct: 233 LDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDL 292

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L + M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL
Sbjct: 293 KQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTAL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     +  +M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L   M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 1/168 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C+ GRV+ A  +  +M+    S    TY  ++  L + G   QA
Sbjct: 248 IDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 20/216 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           + A+G + D+ T   L+N   ++   + AN           + N     +++   C+   
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKN-G 255

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  + D M+  G     IT+ 
Sbjct: 256 RVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  +  TY  ++   C+ G V     LL+ M  DG
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   +I  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDNG 236


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 57  LLNKRARDCCFNTANTFNFI----TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGR 112
           +LN+  RD  F  A+    +       E  +  ++D    ++ +  GF   S  +TL+ +
Sbjct: 114 MLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSC-NTLLIQ 172

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           L K + ++ A  +   M   G   S +TF+ ++++L++  ++ EA  ++  + +  +SPD
Sbjct: 173 LAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPD 232

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  L+  +C   NL    GV  +M +E    ++ TY  L+ G C  GRV+EA  +L 
Sbjct: 233 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 292

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            M++ G      TY   + AL  + +  +A++ V     R  + + + + +L S L  L 
Sbjct: 293 EMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 352

Query: 293 RFNEANFILKEMNKRDL 309
           +   A  +  +M K  L
Sbjct: 353 KLEVAIGLYHKMLKEGL 369



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 124/286 (43%), Gaps = 10/286 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   Y+ L+N    + ++     LL+    + C     T+N + +  +    L      
Sbjct: 441 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 500

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              + + G  P   +Y  LI    K  K+D AL ++  M E G   +  +++ +++ L++
Sbjct: 501 FQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSK 560

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R  EA  + + M E  + P++  Y  L+   C  G       +   ME+ K   +  T
Sbjct: 561 ENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT 620

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y +L+ G C+ G+ +EA     RM + G      TY+ ++  L R G + +A + V    
Sbjct: 621 YSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMK 676

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLR 316
            R    D E++ SL   LI   +  E +  LK  +  + K GF+L 
Sbjct: 677 ERGFCPDREIYYSL---LIAHCKNLEVDHALKIFHSIEAK-GFQLH 718



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 94/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC   +   AL++   M   G   +  T++ I+  L  G  +E+A  L
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M ++   P +  YN L+  Y  KGN+   + +L  M+E     D  TY+ LV G  +
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E A    + MV+ G +    +Y  ++    + G    A+  +          + E 
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + ++ + L    RF+EA  I  +M ++ L
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGL 579



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 35/239 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH-PI--------------- 144
           P    Y TLI  LC   ++DEAL +++ M E G   +  T+  PI               
Sbjct: 266 PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIEL 325

Query: 145 -------------------LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
                              +S L+R  ++E A GL   M +  + P+   YN L+   C 
Sbjct: 326 VARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCV 385

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G  +    +   ME     A+ +TY+ ++ G C  G +E+A VL  +M+  G      T
Sbjct: 386 GGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVT 445

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           Y  ++   L  G    A + + +      + D   +  L S      +   A+F  +EM
Sbjct: 446 YNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 4/191 (2%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    Y +LI  LC+  K DEA R    M+E G   +  T+  ++S L R  R  EA
Sbjct: 613 KCLPNLYTYSSLIYGLCQEGKADEAER----MSEIGCEPTLDTYSTLVSGLCRKGRFYEA 668

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L++ MKE    PD   Y  LL A+C    +     +   +E +        Y AL+  
Sbjct: 669 EQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICA 728

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+AG+VEEA  L   M++   +     +  ++  LL+ G     +K + +   ++   +
Sbjct: 729 LCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPN 788

Query: 278 TELFGSLGSKL 288
            + +  LG +L
Sbjct: 789 IQTYVILGREL 799



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 77/166 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI        ++ A R++D+M E G      T++ ++S  ++  ++E A  
Sbjct: 440 LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASF 499

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M E  ++P+  +Y  L+  +   G +     +LK+MEE     +  +Y+A++ G  
Sbjct: 500 YFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS 559

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +  R  EA  +  +MV+ G      TY  ++  L R G    A K 
Sbjct: 560 KENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 605



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 64/157 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+  LC+  +  EA ++V  M E GF      ++ +L    +   ++ A  +
Sbjct: 647 PTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKI 706

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              ++       L+ Y  L+ A C  G +     +   M E++  AD   +  LV G  +
Sbjct: 707 FHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLK 766

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G ++    LL  M     +    TY  +   L R+G
Sbjct: 767 EGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIG 803


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 96/211 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TL+  LCK +++ +A  +++ M E G      TF  ++    R   +E+A  
Sbjct: 366 LPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQ 425

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + + + R+ PD+  YN L+   C +G+L   + +   M   ++  +  TY  L+   C
Sbjct: 426 FFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHC 485

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             G+V+ AF  L  MV+ G      TY  ++    R G  ++  +F+       +  D  
Sbjct: 486 EKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLI 545

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            + +L    +   + +EA  +LK M   +++
Sbjct: 546 TYNTLIHGYVKEGKMHEAFNLLKIMENENVQ 576



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 15/265 (5%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD------CCFNT-ANTFNFITNT 79
           G  PD  T   Y+ L+N    ER L     LLN+          C F T  + +    N 
Sbjct: 364 GCLPDVVT---YNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNI 420

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E +L     +     R     P    Y+TLI  +C+   + +A  + D M       + +
Sbjct: 421 EKALQFFDTISDQRLR-----PDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHV 475

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  ++       +++ A+  ++ M    + P++  YN ++  YC  GN++     L KM
Sbjct: 476 TYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKM 535

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             +K+  D  TY+ L+ G  + G++ EAF LL+ M ++       TY  ++      G  
Sbjct: 536 RHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNM 595

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSL 284
            +A       G R I+ D   + S+
Sbjct: 596 QEADWVYKKMGARGIEPDRYTYMSM 620



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 110/247 (44%), Gaps = 2/247 (0%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGFPRK-SAYDTLIGRLCKLKKIDEAL 123
           C     T+N + N       LSD    L  + ++G P     + TLI   C+   I++AL
Sbjct: 365 CLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKAL 424

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           +  D +++       +T++ ++  + R   + +A  L + M    + P+   Y+ L+ ++
Sbjct: 425 QFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSH 484

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C KG +      L +M  + +  +  TY++++ G CR+G V +    L +M  D      
Sbjct: 485 CEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDL 544

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++   ++ G   +A   + +    +++ D   +  + S         EA+++ K+
Sbjct: 545 ITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKK 604

Query: 304 MNKRDLK 310
           M  R ++
Sbjct: 605 MGARGIE 611



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 94/214 (43%), Gaps = 14/214 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT-------ENSLSV 85
           P    Y+ L++    + DL     L +       F    T++ + ++       +N+ + 
Sbjct: 437 PDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAF 496

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           L ++      ++KG  P    Y+++I   C+   + +  + +  M         IT++ +
Sbjct: 497 LDEM------VNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTL 550

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +  +M EA+ L+++M+   V PD   YN +++ +   GN+     V KKM    +
Sbjct: 551 IHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGI 610

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             D  TY +++ G   AG  +++F L   M+  G
Sbjct: 611 EPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKG 644



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 4/210 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    ++ ++    +   ++ A+ ++D M   G     +T++ +L  L R  R ++A  
Sbjct: 191 FPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKARE 250

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +   M    V+PD+ ++N L+  +C  G L       K+M   ++  D  ++  L+    
Sbjct: 251 VFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFT 310

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA--VKFVMVCGGRDIKLD 277
           R G ++ A   LR M + G       Y  V+G   R G   +A  V+  MV  G     D
Sbjct: 311 RRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFG--CLPD 368

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
              + +L + L    R ++A  +L EM +R
Sbjct: 369 VVTYNTLLNGLCKERRLSDAEELLNEMKER 398



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 92/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++ LIG  C+  +++EALR    M         ++F  ++ + TR   M+ A   
Sbjct: 262 PDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEY 321

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  + PD   Y  ++  +C  G +     V  +M       D  TY+ L+ G C+
Sbjct: 322 LREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCK 381

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R+ +A  LL  M + G      T+  ++    R G   +A++F      + ++ D   
Sbjct: 382 ERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVT 441

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + +L   +       +AN +  +M+ R++
Sbjct: 442 YNTLIDGMCRQGDLGKANELWDDMHSREI 470



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 68/160 (42%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + ++   CK  +  E   V+  M +       +T + ++    R   +E A  L++ M  
Sbjct: 163 NIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVS 222

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + P L  YN +L      G       V + M+   +  D R+++ L+ G CRAG +EE
Sbjct: 223 KGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEE 282

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           A    + M     +    +++ ++G   R G    A +++
Sbjct: 283 ALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYL 322



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 52/131 (39%)

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           N ++ +YC          V+ +ME+  +  D  T++ +V    RAG VE A  L+  MV 
Sbjct: 163 NIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVS 222

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G      TY  V+  LLR G + +A +         +  D   F  L           E
Sbjct: 223 KGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEE 282

Query: 297 ANFILKEMNKR 307
           A    KEM  R
Sbjct: 283 ALRFYKEMRGR 293



 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 52/115 (45%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R DK  P    Y+TLI    K  K+ EA  ++ IM        A+T++ I+S  +    M
Sbjct: 536 RHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNM 595

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +EA  + + M    + PD   Y  ++  +   GN   +  +  +M ++ L  D +
Sbjct: 596 QEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPDDK 650


>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 501

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 85/197 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  +C  K + EA R+VDI+ E GF      ++ I+       R  EA  +
Sbjct: 232 PNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEV 291

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MKE  V PDL  YN L+      G ++    +L+ M E+    D  TY +L+ G CR
Sbjct: 292 YNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCR 351

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G    A  LL  M   G S    TY  ++  L +   + +A++         +KLD   
Sbjct: 352 KGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDMAS 411

Query: 281 FGSLGSKLIGLERFNEA 297
           + +    L  + R  +A
Sbjct: 412 YATFVRALCSVGRVADA 428



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 27/242 (11%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P   +Y+ L+  LCK + +      +D M  +     + +T+  ++  +   K + EA  
Sbjct: 196 PDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVKPNLVTYTILIDNVCNTKNLREATR 255

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+++++E    PD   YN ++  YC     +    V  +M+E+ +  D  TY+ L+ G  
Sbjct: 256 LVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLS 315

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM------------ 267
           ++GRV EA  LLR M + G      TY  +M  + R G    A+  +             
Sbjct: 316 KSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTC 375

Query: 268 --------VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYY 319
                   +C  R      EL+G++ S  + L+  + A F+      R L    ++ D Y
Sbjct: 376 TYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYATFV------RALCSVGRVADAY 429

Query: 320 EI 321
           E+
Sbjct: 430 EV 431



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 61/136 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  L K  ++ EA +++ +MAE G     +T+  +++ + R      A  L
Sbjct: 302 PDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALAL 361

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M+    SP+   YN LL   C          +   M+ + L  D  +Y   V   C 
Sbjct: 362 LEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYATFVRALCS 421

Query: 221 AGRVEEAFVLLRRMVD 236
            GRV +A+ +    V+
Sbjct: 422 VGRVADAYEVFDYAVE 437



 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 69  TANTFNFITNTENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVD 127
           T NT  F  +    +S    L R +A  +KG FP +  Y +L+  +C+  +   AL +++
Sbjct: 306 TYNTLIFGLSKSGRVSEAKKLLRVMA--EKGHFPDEVTYTSLMNGMCRKGETLAALALLE 363

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M   G   +  T++ +L  L + +  ++A  L   MK   +  D+ +Y   + A C  G
Sbjct: 364 EMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYATFVRALCSVG 423

Query: 188 NLTATSGVLKKMEEEKLGADARTYDAL 214
            +     V     E K  +D   Y  L
Sbjct: 424 RVADAYEVFDYAVESKSLSDVAAYSTL 450


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 4/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  +  D L+    K   +  A +VV +MA+ G   +    + +L  L R   ME  W L
Sbjct: 171 PSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKL 230

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+   + PD+  Y+  + A+C   +  A   V ++M       +  TY+ ++ G CR
Sbjct: 231 KGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCR 290

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
           +G VEEAF     MVD G S    TY  +M  L +     +A   +  M C G  +K + 
Sbjct: 291 SGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSG--LKPNI 348

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
            ++G+L    +   +  EA  ILKEM
Sbjct: 349 VVYGTLVDGFMKEGKTAEAFDILKEM 374



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y T I   CK +  D A +V + M      ++ +T++ ++S L R   +EEA+G
Sbjct: 240 LPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFG 299

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             E M +  +SPD   Y  L+   C    L     +L +M    L  +   Y  LV G  
Sbjct: 300 FKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFM 359

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G+  EAF +L+ M+  G       Y +++  L ++G   +A K +
Sbjct: 360 KEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL 406



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 90/210 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y  +I  LC+  +  EA  +++ M   G   +A  + P++   ++   +  A  
Sbjct: 450 LPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACE 509

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +E M +  V PDL  YN L+      G +        ++++  L  D  TY  L+ G C
Sbjct: 510 ALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYC 569

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G +E+A  LLR+M++ G      TY  ++    +   Y +    +    G   K D  
Sbjct: 570 KTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNH 629

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           ++G +   L   E    A  +L E+ K  L
Sbjct: 630 IYGIVIRNLSRSENMEVAFMVLTEVEKNGL 659



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 13/243 (5%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SL++ L T   + ++        K G  PDE T   Y  L++      +LE    LL + 
Sbjct: 528 SLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFT---YSGLIHGYCKTGNLEKADQLLRQM 584

Query: 62  ARDCCFNTANTFN------FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCK 115
                   A+T+       F +N    +S  S L   L   DK  P    Y  +I  L +
Sbjct: 585 LNSGLKPNADTYTDLLEGYFKSNDYEKVS--SILQSMLGSGDK--PDNHIYGIVIRNLSR 640

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
            + ++ A  V+  + + G       +  ++S L +   ME+A GL++ M +  + P +  
Sbjct: 641 SENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVC 700

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           YN L+  +C  G+++    V   +  + L  +  TY AL+ G C+ G + +AF L + M+
Sbjct: 701 YNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEML 760

Query: 236 DDG 238
           D G
Sbjct: 761 DRG 763



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 27/235 (11%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLS 84
           +G  PD  T   Y   + A    RD +  + +  + R RDC  N   T+N +        
Sbjct: 237 AGILPDVYT---YSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEV-TYNVM-------- 284

Query: 85  VLSDLCRTLA----------RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
            +S LCR+ A           +D G  P    Y  L+  LCK  ++ EA  ++D M+  G
Sbjct: 285 -ISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSG 343

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
              + + +  ++    +  +  EA+ +++ M    V P+   Y+ L+   C  G L   S
Sbjct: 344 LKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRAS 403

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
            +LK+M +  L  D  TY+ L+ G  +    + AF LL  M + G  +L + Y++
Sbjct: 404 KLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSG--ILPNVYSY 456



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 71/145 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I  LC+   ++EA    + M + G    A T+  +++ L +G R++EA  L++ M 
Sbjct: 281 YNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMS 340

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y  L+  +  +G       +LK+M    +  +   YD L+ G C+ G++ 
Sbjct: 341 CSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLG 400

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVM 250
            A  LL+ M+  G      TY  +M
Sbjct: 401 RASKLLKEMIKVGLRPDTFTYNPLM 425



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 93/209 (44%), Gaps = 5/209 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LCK+  +++A+ ++D MA+ G     + ++ ++    R   +  A  +
Sbjct: 661 PDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNV 720

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +    + P+   Y  L+   C  G++T    + K+M +  +  DA  Y+ L  G   
Sbjct: 721 FDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSD 780

Query: 221 AGRVEEAFVLLRRMVDDGQS--VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           A  +E+A  L   M + G +   L++T  H      + G   +  K + V   R+I  + 
Sbjct: 781 AADLEQALFLTEEMFNRGYANVSLFNTLVH---GFCKRGKLQETEKLLHVMMDREIVPNA 837

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +    + S+     +  EA+ +  E+ ++
Sbjct: 838 QTVEKVVSEFGKAGKLGEAHRVFAELQQK 866



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 89/210 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  YD LI  LCK+ ++  A +++  M + G      T++P++    +    + A+ L
Sbjct: 381 PNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFEL 440

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   + P++ +Y  ++   C  G       +L++M  E L  +A  Y  L++G  +
Sbjct: 441 LNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSK 500

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +  A   L +M           Y  ++  L  +G   +A ++      R +  D   
Sbjct: 501 EGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFT 560

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L           +A+ +L++M    LK
Sbjct: 561 YSGLIHGYCKTGNLEKADQLLRQMLNSGLK 590


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 96/209 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI  LCK   +  A+ +V+ M+  G   + IT+  +L    +  ++EEA  +
Sbjct: 378 PDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYV 437

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M       ++  YN LL A C  G +     +L +M ++    D  T++ L+ G C+
Sbjct: 438 LNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCK 497

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R E+A  L R M+ DG      TY  ++ A LR G   +A+K V     R   LD   
Sbjct: 498 VDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEIT 557

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L      L    +A  +  EM ++DL
Sbjct: 558 YNGLIKAFCKLGATEKALGLFDEMVRKDL 586



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI   CKL   ++AL + D M       S I+ + +++ L R  ++  A  L+  M 
Sbjct: 558 YNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMI 617

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++PD+  YN L+   C  GN+     +  K++ E +  DA TY+ L+   CRAG  +
Sbjct: 618 HRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFD 677

Query: 226 EAFVLLRRMVDDG 238
           +A++LL R V++ 
Sbjct: 678 DAYLLLLRGVENA 690



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 23/294 (7%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L  K L+  +V +    + +G  P+  T   Y  L++    +  LE   Y+LN+ 
Sbjct: 385 TLIHGLCKKGLMGSAVDMVNDMSANGCTPNLIT---YTTLLDGFCKKNQLEEAGYVLNEM 441

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRT---------LARL-DKGF-PRKSAYDTLI 110
                  +A  F       N L  L  LC+          L  + DKG  P    ++TLI
Sbjct: 442 -------SAKGFELNIMGYNVL--LRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLI 492

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
             LCK+ + ++AL +   M   G   + +T++ ++    RG  ++EA  L+  M      
Sbjct: 493 FGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCP 552

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
            D   YN L+ A+C  G      G+  +M  + L     + + L+ G CR G+V  A  L
Sbjct: 553 LDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALEL 612

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           LR M+  G +    TY  ++  L ++G   +A           I+ D   + +L
Sbjct: 613 LRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTL 666



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKG-FPRKSAYD 107
           +  R LL+ +   CC  T  ++N + +   + N  SV +++   +  L KG  P    + 
Sbjct: 155 QATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEM--LSKGVIPTVYTFG 212

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
            ++  LC + ++D A  ++  M + G   +++ +  ++  L++  R+ EA  L+E M  +
Sbjct: 213 VVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLM 272

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
              PD+  +N ++   C    +   + ++ +M       +  TY  L+ G CR G+V+EA
Sbjct: 273 GCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEA 332

Query: 228 FVLLRRM 234
            VLL ++
Sbjct: 333 QVLLNKV 339



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           TE +L +  ++ R         P   + + LI  LC++ K+  AL ++  M   G     
Sbjct: 571 TEKALGLFDEMVRK-----DLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDV 625

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           +T++ +++ L +   + EA+ L   ++   + PD   YN L+  +C  G
Sbjct: 626 VTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAG 674


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 8/213 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y+TLI   C+  + +EA R+V+ M E G     +TF+  +S L    ++ EA  +
Sbjct: 219 PNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRI 278

Query: 161 ---MEVMKEIRVS-PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
              M++ +E+ +  P++T +N +L  +C +G L     +++ M+      +  +Y+  +L
Sbjct: 279 FRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLL 338

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA--VKFVMVCGGRDI 274
           G  R G++ EA + L+ MVD G      ++  VM  L + G  + A  +  +M+  G  I
Sbjct: 339 GLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSG--I 396

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             DT  + +L        +  +AN IL EM +R
Sbjct: 397 GPDTVTYSTLLHGCCSTGKVLKANNILHEMMRR 429



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 106/235 (45%), Gaps = 20/235 (8%)

Query: 85  VLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           +++ LC+   RLD+              P    YDT I   CK  KI  A RV+  M + 
Sbjct: 534 IINGLCKA-GRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKR 592

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   S  T++ ++  L    ++ E +GL++ MKE  ++P++  YN +++  C  G +   
Sbjct: 593 GCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDA 652

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRA---GRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
           + +L +M ++ +  +  ++  L+   C+A   G V+E F +   +    +++    Y+ +
Sbjct: 653 TSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVKEVFEIALSICGHKEAL----YSLM 708

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              LL  G  ++A +       R   L    +  L  KL   E    A+ IL +M
Sbjct: 709 FNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDILHKM 763



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 114/258 (44%), Gaps = 6/258 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G+F  +P    Y+ L+++   E   E    L+ +   D  F    TFN   +   S   +
Sbjct: 213 GSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKI 272

Query: 87  SDLCRTL--ARLDK--GFPRK--SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            +  R     ++D+  G PR   + ++ ++   CK   ++EA  +V+ M   G  +   +
Sbjct: 273 LEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELES 332

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++  L  L R  ++ EA   ++ M +  + P++ ++N ++   C  G ++    ++  M 
Sbjct: 333 YNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMI 392

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              +G D  TY  L+ G C  G+V +A  +L  M+  G S    T   ++ +L + G   
Sbjct: 393 SSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIF 452

Query: 261 QAVKFVMVCGGRDIKLDT 278
           +A K +     R   LD 
Sbjct: 453 EAEKLLQKMNERSYDLDN 470



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 24/236 (10%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG  P   +++T++  LCK   I +A  ++ +M   G G   +T+  +L       ++
Sbjct: 357 VDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKV 416

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  ++  M     SP+    N LL +   +G +     +L+KM E     D  T + +
Sbjct: 417 LKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIV 476

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS-----------------------TYAHVMG 251
           + G C++G+++EA  ++  M   G + L +                       TY+ ++ 
Sbjct: 477 IDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIIN 536

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            L + G   +A K  +   G+ +  D+ ++ +         + + A  +LK+M KR
Sbjct: 537 GLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKR 592



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 8/210 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI  LC   + ++A  V D M   G   +  +F  ++    R      A  L
Sbjct: 149 PETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALEL 208

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    V P+   YN L++++C +G       ++++M E+ L  D  T+++ +   C 
Sbjct: 209 LDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCS 268

Query: 221 AGRVEEAFVLLRRMVDDGQSVL----YSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDI 274
           AG++ EA  + R M  D +  L     +T+  ++    + G   +A   V  M   G  +
Sbjct: 269 AGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLM 328

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +L++     LG  L+   +  EA   LKEM
Sbjct: 329 ELESYNIWLLG--LVRNGKLLEAQLALKEM 356



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 81/180 (45%), Gaps = 4/180 (2%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    Y  +I  LCK  ++DEA +    M        +I +   +    +  ++  A
Sbjct: 523 KCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSA 582

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           + +++ M++   +  L  YN L+     K  +    G+L  M+E+ +  +  TY+ ++  
Sbjct: 583 FRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISC 642

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR---LGYYAQAVKFVM-VCGGRD 273
            C  GR+++A  LL  M+  G S   S++  ++ A  +    G   +  +  + +CG ++
Sbjct: 643 LCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVKEVFEIALSICGHKE 702



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 14/201 (6%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++    +  K+D    +   M   G      T + +++ L    R E+A  +
Sbjct: 114 PPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREV 173

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P+  ++  L+  YC  G       +L  M    +  +   Y+ L+   CR
Sbjct: 174 FDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCR 233

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR EEA  L+ RM +DG      T+   + AL   G   +A +       RD+++D EL
Sbjct: 234 EGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIF-----RDMQIDEEL 288

Query: 281 FGSLGSKLIGLERFNEANFIL 301
                    GL R N   F L
Sbjct: 289 ---------GLPRPNITTFNL 300


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 2/240 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N + N     S LS     L ++ K G+ P     ++L+   C   +I EA+ +VD M
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E G+    +TF  ++  L +  +  EA  L+E M      PDL  Y  ++   C +G  
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 221

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +L KME+ K+ AD   Y  ++   C+   V++A  L   M + G      TY+ +
Sbjct: 222 DLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSL 281

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   G ++ A + +     R I  +   F SL        +  EA  +  EM +R +
Sbjct: 282 ISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 341



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 6/239 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD--- 88
           +P    Y+ L+N       L+  + +        C     T+N + N       + D   
Sbjct: 342 DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME 401

Query: 89  LCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L R ++R  +G    +  Y TLI    +    D A  V   M   G   + +T++ +L  
Sbjct: 402 LFRDMSR--RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 459

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L +  ++E+A  + E +++ ++ PD+  YN +    C  G +     +   +  + +  D
Sbjct: 460 LCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPD 519

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
              Y+ ++ G C+ G  EEA+ L  +M +DG      TY  ++ A LR G  A + + +
Sbjct: 520 VIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELI 578



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 4/156 (2%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG  P    Y +LI  LC   +  +A R++  M E     + +TF+ ++    +  ++ 
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLI 327

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L + M +  + P++  YN L+  +C    L     +   M  +    D  TY+ L+
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387

Query: 216 LGACRAGRVEEAFVLLRRMVDD---GQSVLYSTYAH 248
            G C+A +V +   L R M      G +V Y+T  H
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIH 423



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 66/130 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y T+I  LCK + +D+AL +   M   G      T+  ++S L    R  +A  L+  M 
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E +++P++  +N L+ A+  +G L     +  +M +  +  +  TY++L+ G C   R++
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 362

Query: 226 EAFVLLRRMV 235
           EA  +   MV
Sbjct: 363 EAQQIFTLMV 372



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 91/213 (42%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           + FP    +  L+  + K+KK D  +   + M   G   +  T++ +++ L R  ++  A
Sbjct: 60  RPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFA 119

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++  M ++   P +   N LL  +C    ++    ++ +M E     D  T+  LV G
Sbjct: 120 LAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHG 179

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             +  +  EA  L+ RMV  G      TY  V+  L + G    A+  +       I+ D
Sbjct: 180 LFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEAD 239

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             ++ ++   L      ++A  +  EM+ + ++
Sbjct: 240 VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIR 272



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 7/191 (3%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+DEA+ +   M +     S + F  +LS + + K+ +      E M+ + VS +L  YN
Sbjct: 45  KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++   C +  L+    +L KM +   G    T ++L+ G C   R+ EA  L+ +MV+ 
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFN 295
           G      T+  ++  L +    ++AV  V  MV  G    L T      G+ + GL +  
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVT-----YGAVINGLCKRG 219

Query: 296 EANFILKEMNK 306
           E +  L  +NK
Sbjct: 220 EPDLALNLLNK 230



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 67/138 (48%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y+TL+  LCK  K+++A+ V + + +        T++ +   + +  ++E+
Sbjct: 444 DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED 503

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
            W L   +    V PD+ AYN +++ +C KG       +  KM+E+    D+ TY+ L+ 
Sbjct: 504 GWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIR 563

Query: 217 GACRAGRVEEAFVLLRRM 234
              R G    +  L++ M
Sbjct: 564 AHLRDGDKAASAELIKEM 581



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 74/163 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++LI    K  K+ EA ++ D M +     + +T++ +++      R++EA  +
Sbjct: 308 PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 367

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M      PD+  YN L+  +C    +     + + M    L  +  TY  L+ G  +
Sbjct: 368 FTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQ 427

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           A   + A ++ ++MV DG      TY  ++  L + G   +A+
Sbjct: 428 ASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 470



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 23/204 (11%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y  L++      D +  + +  +   D       T+N         ++L  LC+   +L+
Sbjct: 418 YTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYN---------TLLDGLCKN-GKLE 467

Query: 98  KGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           K              P    Y+ +   +CK  K+++   +   ++  G     I ++ ++
Sbjct: 468 KAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMI 527

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           S   +    EEA+ L   MKE    PD   YN L+ A+   G+  A++ ++K+M   +  
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFA 587

Query: 206 ADARTYDALVLGACRAGRVEEAFV 229
            DA TY  LV      GR+++ F+
Sbjct: 588 GDASTY-GLVTDMLHDGRLDKGFL 610


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 12/186 (6%)

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF            P    Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     +  +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L   M   G      TY  ++    + G+   A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +
Sbjct: 233 LDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL 292

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L + M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL
Sbjct: 293 KQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTAL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 20/218 (9%)

Query: 40  DLVNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRT 92
           + + A+G + D+ T   L+N   ++   + AN           + N     +++   C+ 
Sbjct: 195 NXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKN 254

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             R+D               P    Y+TLI  LCK   + +A  + D M+  G     IT
Sbjct: 255 -GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKIT 313

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M 
Sbjct: 314 YTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 373

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
              L  +  TY  ++   C+ G V     LL+ M  DG
Sbjct: 374 SVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   +J  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDNG 236


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 10/217 (4%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL-SVLTRGKR 153
           L KG  P    Y+ +I  +CK   +D+A  ++  ++  G     IT++ +L ++L+RGK 
Sbjct: 235 LSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGK- 293

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
             E   L+  M  I   P++  ++ L+   C  G +     +L+ M+E+ L  DA  YD 
Sbjct: 294 WSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDP 353

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV----KFVMVC 269
           L+ G CR GR++ A   L  M+ DG       Y  +M  L R G   QA+    K   V 
Sbjct: 354 LIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVG 413

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
              ++     LF +L S     +R+     ILK +N+
Sbjct: 414 CPPNVSSYNTLFSALWS---SGDRYRALEMILKLLNQ 447



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 10/217 (4%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL-SVLTRGKRMEEA 157
           G P   AY+ LI    K  +++ A RV+D M   GF    +T++ ++ S  +RGK ++ A
Sbjct: 134 GKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGK-LDLA 192

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + E + +    P +  Y  L+ A    G +     +L +M  + L  D  TY+A++ G
Sbjct: 193 LEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRG 252

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGG--RD 273
            C+   V++AF LLR +   G      TY  ++  LL  G +++  K +  M+  G   +
Sbjct: 253 MCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPN 312

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +   + L G+L        +  EA  +L+ M ++ LK
Sbjct: 313 VVTHSILIGTLCRD----GKVEEAVNLLRSMKEKGLK 345



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 121/286 (42%), Gaps = 22/286 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EPT   Y  L+ A   +  ++    LL++           T+N         +++  +C+
Sbjct: 205 EPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYN---------AIIRGMCK 255

Query: 92  TLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
            +  +DK F            P    Y+ L+  L    K  E  +++  M   G   + +
Sbjct: 256 EMM-VDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVV 314

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   ++  L R  ++EEA  L+  MKE  + PD   Y+ L+  +C +G L   +  L+ M
Sbjct: 315 THSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYM 374

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             +    D   Y+ ++ G CR G+ ++A  +  ++ + G     S+Y  +  AL   G  
Sbjct: 375 ISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDR 434

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
            +A++ ++    + I  D   + SL S L      +EA  +L +M 
Sbjct: 435 YRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQ 480



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 82/170 (48%), Gaps = 2/170 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRME 155
           D   P    Y+T++  LC+  K D+AL V + + E G   +  +++ + S L + G R  
Sbjct: 377 DGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYR 436

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
               +++++ +  + PD   YN L++  C  G +     +L  M+  +   +  +Y+ ++
Sbjct: 437 ALEMILKLLNQ-GIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIIL 495

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           LG C+  R  +A  +L  M + G     +TY  ++  +   G  A+A++ 
Sbjct: 496 LGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMEL 545



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 94/230 (40%), Gaps = 25/230 (10%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAY-YDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           + ++V + RS  + G  PD    AY YD L+     E  L+     L     D C     
Sbjct: 329 VEEAVNLLRSMKEKGLKPD----AYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIV 384

Query: 72  TFNFITNTENSLSVLSDLCRT---------LARLDK--GFPRKSAYDTLIGRLCKLKKID 120
            +N         ++++ LCRT           +LD+    P  S+Y+TL   L       
Sbjct: 385 NYN---------TIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRY 435

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
            AL ++  +   G     IT++ ++S L R   ++EA  L+  M+  R  P++ +YN +L
Sbjct: 436 RALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIIL 495

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
              C          VL  M E+    +  TY  L+ G   +G   EA  L
Sbjct: 496 LGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMEL 545


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 5/157 (3%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           NTF      + SL +L D+ R   +     P    Y TLI  LCK +K  +A R++++M 
Sbjct: 307 NTFARAGQFDASLELLEDMRRNGVK-----PDVVTYSTLINVLCKERKFQDAFRLLELME 361

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   + +T++ ++  L +  +M+E   + E+M + R SPD+  Y+ ++      G L 
Sbjct: 362 AAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLD 421

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
           +   + + ++  + G DA  Y  ++   CRAG++EEA
Sbjct: 422 SAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEA 458



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 98/218 (44%), Gaps = 13/218 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI    +  + D +L +++ M   G     +T+  +++VL + ++ ++A+ L
Sbjct: 297 PDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRL 356

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E+M+     P++  YN ++   C  G +     V + M + +   D  TY  ++ G  +
Sbjct: 357 LELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSK 416

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG---GRDIKLD 277
           AG ++ A  L   +    +    + Y+ V+ +L R G   +A      CG   G ++ + 
Sbjct: 417 AGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEA------CGMYHGMEVTVA 470

Query: 278 TE----LFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            +        L + L   ER + A  I++  ++R  +M
Sbjct: 471 GDNICRALAGLVAALCDAERTDSARRIVEVASERGHRM 508



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           +AY   +  LCK   +D A + V+ + + G     +T+  +++   R  + + +  L+E 
Sbjct: 265 AAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLED 324

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+   V PD+  Y+ L+   C +        +L+ ME      +  TY++++ G C++G+
Sbjct: 325 MRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGK 384

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           ++E   +   M+    S    TY+ +M  L + G    AVK 
Sbjct: 385 MDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKL 426



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 7/209 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  L +  +IDEALRV+            IT   I+  L +  R+++A   
Sbjct: 156 PNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKF 215

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL----GADARTYDALVL 216
           ME M+++ V P+   Y+ L+  +   G L     V++  EEEK       +A  Y   + 
Sbjct: 216 MEEMRQMGVRPNEVTYSNLVHGFRQHGEL---DRVIRFFEEEKARKGGSLEAAAYPGYLD 272

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
             C+AG ++ A   +  +   G      TY+ ++    R G +  +++ +       +K 
Sbjct: 273 ALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKP 332

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMN 305
           D   + +L + L    +F +A  +L+ M 
Sbjct: 333 DVVTYSTLINVLCKERKFQDAFRLLELME 361



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 26/252 (10%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V +   ++G  P+  T       ++ AG E D E +R ++ +R          +    T+
Sbjct: 145 VFQEMKRNGCKPNPITYGTLIQHLSRAG-EID-EALRVMIEQR----------SLELPTD 192

Query: 79  TENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVV 126
                +++  LC+  +RLD               P +  Y  L+    +  ++D  +R  
Sbjct: 193 VITCTTIVGGLCKA-SRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFF 251

Query: 127 DI-MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           +   A  G  L A  +   L  L +   ++ A   +E +++  V PD+  Y+ L+  +  
Sbjct: 252 EEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFAR 311

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G   A+  +L+ M    +  D  TY  L+   C+  + ++AF LL  M   G      T
Sbjct: 312 AGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVT 371

Query: 246 YAHVMGALLRLG 257
           Y  VM  L + G
Sbjct: 372 YNSVMDGLCKSG 383



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 1/203 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
            A+  L  +L +  K  E +R+  ++A  G      T+  ++  L       +A  L+  
Sbjct: 20  QAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRE 79

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +  +  +P L  YN ++T  C    +     VL+KM EE +  +  TY  L+ G CR+ +
Sbjct: 80  LSGV-YTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNK 138

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
            + A  + + M  +G      TY  ++  L R G   +A++ ++     ++  D     +
Sbjct: 139 TKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTT 198

Query: 284 LGSKLIGLERFNEANFILKEMNK 306
           +   L    R ++A   ++EM +
Sbjct: 199 IVGGLCKASRLDDALKFMEEMRQ 221



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 72/160 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I  LC+  ++ +A +V++ M E     +  T+  +L+ L R  + + A  + + MK
Sbjct: 91  YNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMK 150

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                P+   Y  L+      G +     V+ +    +L  D  T   +V G C+A R++
Sbjct: 151 RNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLD 210

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +A   +  M   G      TY++++    + G   + ++F
Sbjct: 211 DALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRF 250


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y++LI  LCKL KI  AL++VD M + G     IT++ IL  L +  ++++A  
Sbjct: 384 IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 443

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  MK+  + PD+  Y  L+   C  G L     V + +  +    D   Y A++ G C
Sbjct: 444 LLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFC 503

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
             G  +E+  LL +M ++G      TY  ++ +L 
Sbjct: 504 SHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLF 538



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 79/163 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  +I   CK+KK+DEA+ +   M         +T++ ++  L +  ++  A  L
Sbjct: 350 PNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKL 409

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  V  D   YN +L A C    +     +L KM++E +  D  TY  LV G C+
Sbjct: 410 VDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCK 469

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR+E+A ++   ++  G  +  + Y  ++      G + +++
Sbjct: 470 NGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESL 512



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 82/157 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++L+ R C +K++++A  + + +++ G   +  ++  ++    + K+++EA  L
Sbjct: 315 PDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNL 374

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + PD+  YN L+   C  G ++    ++ +M +  +  D  TY++++   C+
Sbjct: 375 FKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCK 434

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
             +V++A  LL +M D+G      TY  ++  L + G
Sbjct: 435 NHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNG 471



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 35/239 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS-------------- 146
           P    Y+T+I  +CK+K ++EA  +   M   G     +T++ ++S              
Sbjct: 210 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDL 269

Query: 147 -----------------VLTRG----KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
                            +L  G    +R++EA  ++ +M +  + PD+  YN L+  YC 
Sbjct: 270 FNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCL 329

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
              +     +   + +  +  +  +Y  ++ G C+  +V+EA  L + M  +       T
Sbjct: 330 VKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVT 389

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           Y  ++  L +LG  + A+K V     R +  D   + S+   L    + ++A  +L +M
Sbjct: 390 YNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 448



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+   CK +++ EA  V+ +M + G      T++ ++      K + +A  +
Sbjct: 280 PNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHI 339

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              + +  V+P++ +Y+ ++  +C    +     + K+M    +  D  TY++L+ G C+
Sbjct: 340 FNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCK 399

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++  A  L+  M D G      TY  ++ AL +     +A+  +       I+ D   
Sbjct: 400 LGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICT 459

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L   L    R  +A  + +++
Sbjct: 460 YTTLVDGLCKNGRLEDARIVFEDL 483



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 108/238 (45%), Gaps = 7/238 (2%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           N F+ +     S SVL+ +      L  G+ P      TLI  LC   +I +AL+  D +
Sbjct: 115 NCFSQLGQNPLSFSVLAKI------LKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKV 168

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF L+ +++  +++ L +  +   A  L+  +    V P++  YN ++ + C    +
Sbjct: 169 VALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLV 228

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  +M  + +  D  TY+AL+ G C  G++++A  L  +M+ +  +    T+  +
Sbjct: 229 NEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNIL 288

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +    +     +A   + +   + IK D   + SL  +   ++  N+A  I   +++R
Sbjct: 289 VDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQR 346


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 5/157 (3%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           NTF      + SL +L D+ R   +     P    Y TLI  LCK +K  +A R++++M 
Sbjct: 307 NTFARAGQFDASLELLEDMRRNGVK-----PDVVTYSTLINVLCKERKFQDAFRLLELME 361

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   + +T++ ++  L +  +M+E   + E+M + R SPD+  Y+ ++      G L 
Sbjct: 362 AAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLD 421

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
           +   + + ++  + G DA  Y  ++   CRAG++EEA
Sbjct: 422 SAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEA 458



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 10/215 (4%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           +SG  PD  T   Y  L+N        +    LL    R+       T++ + N      
Sbjct: 292 QSGVVPDVVT---YSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKER 348

Query: 85  VLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
              D  R L  ++     P    Y++++  LCK  K+DE  RV ++M +       +T+ 
Sbjct: 349 KFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYS 408

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            I++ L++   ++ A  L E++K  R  PD  AY+ ++T+ C  G L    G+   ME  
Sbjct: 409 IIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVT 468

Query: 203 KLGAD-ARTYDALVLGACRAGRVEEAFVLLRRMVD 236
             G +  R    LV   C A R + A    RR+V+
Sbjct: 469 VAGDNICRALAGLVAALCDAKRTDSA----RRIVE 499



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 76/162 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI    +  + D +L +++ M   G     +T+  +++VL + ++ ++A+ L
Sbjct: 297 PDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRL 356

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E+M+     P++  YN ++   C  G +     V + M + +   D  TY  ++ G  +
Sbjct: 357 LELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSK 416

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AG ++ A  L   +    +    + Y+ V+ +L R G   +A
Sbjct: 417 AGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEA 458



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           +AY   +  LCK   +D A + V+ + + G     +T+  +++   R  + + +  L+E 
Sbjct: 265 AAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLED 324

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+   V PD+  Y+ L+   C +        +L+ ME      +  TY++++ G C++G+
Sbjct: 325 MRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGK 384

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           ++E   +   M+    S    TY+ +M  L + G    AVK 
Sbjct: 385 MDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKL 426



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 7/209 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  L +  +IDEALRV+            IT   I+  L +  R+++A   
Sbjct: 156 PNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKF 215

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL----GADARTYDALVL 216
           ME M+++ V P+   Y+ L+  +   G L     V++  EEEK       +A  Y   + 
Sbjct: 216 MEEMRQMGVRPNEVTYSNLVHGFRQHGEL---DRVIRFFEEEKARKGGSLEAAAYPGYLD 272

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
             C+AG ++ A   +  +   G      TY+ ++    R G +  +++ +       +K 
Sbjct: 273 ALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKP 332

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMN 305
           D   + +L + L    +F +A  +L+ M 
Sbjct: 333 DVVTYSTLINVLCKERKFQDAFRLLELME 361



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 26/252 (10%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V +   ++G  P+  T       ++ AG E D E +R ++ +R          +    T+
Sbjct: 145 VFQEMKRNGCKPNPITYGTLIQHLSRAG-EID-EALRVMIEQR----------SLELPTD 192

Query: 79  TENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVV 126
                +++  LC+  +RLD               P +  Y  L+    +  ++D  +R  
Sbjct: 193 VITCTTIVGGLCKA-SRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFF 251

Query: 127 DI-MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           +   A  G  L A  +   L  L +   ++ A   +E +++  V PD+  Y+ L+  +  
Sbjct: 252 EEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFAR 311

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G   A+  +L+ M    +  D  TY  L+   C+  + ++AF LL  M   G      T
Sbjct: 312 AGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVT 371

Query: 246 YAHVMGALLRLG 257
           Y  VM  L + G
Sbjct: 372 YNSVMDGLCKSG 383



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 73/165 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  LC+  ++ +A +V++ M E     +  T+  +L+ L R  + + A  +
Sbjct: 86  PTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREV 145

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + MK     P+   Y  L+      G +     V+ +    +L  D  T   +V G C+
Sbjct: 146 FQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCK 205

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           A R+++A   +  M   G      TY++++    + G   + ++F
Sbjct: 206 ASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRF 250



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 1/203 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
            A+  L  +L +  K  E +R+  ++A  G      T+  ++  L       +A  L+  
Sbjct: 20  QAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRE 79

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +  +  +P +  YN ++T  C    +     VL+KM EE +  +  TY  L+ G CR+ +
Sbjct: 80  LSGV-YTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNK 138

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
            + A  + + M  +G      TY  ++  L R G   +A++ ++     ++  D     +
Sbjct: 139 TKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTT 198

Query: 284 LGSKLIGLERFNEANFILKEMNK 306
           +   L    R ++A   ++EM +
Sbjct: 199 IVGGLCKASRLDDALKFMEEMRQ 221


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 18/189 (9%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+DEA  + + M + G   + +T
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEI---RVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           F  ++    +  R++ A   ME+ K++     SPDL  YN L+   C KG+L     ++ 
Sbjct: 244 FTTLIDGHCKNGRVDLA---MEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLID 300

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M  ++L  D  TY  L+ G+C+ G +E AF   +RM+ +   +    Y  ++  L + G
Sbjct: 301 EMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 258 YYAQAVKFV 266
               A K +
Sbjct: 361 RSVDAEKML 369



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK  ++  A  V D + + G   S ++F+ ++S   R   +
Sbjct: 128 LECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M    V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV+ A  + ++++  G S    TY  ++  L + G   QA   +     +++
Sbjct: 248 IDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKEL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 9/218 (4%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE---NS 82
           SG  PD  T   Y  L+N    E  ++    L N+   +       TF  + +       
Sbjct: 200 SGVQPDVYT---YSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 83  LSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           + +  ++ + L  L +GF P    Y+TLI  LCK   + +A  ++D M+        IT+
Sbjct: 257 VDLAMEIYKQL--LSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITY 314

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L+ M  
Sbjct: 315 TTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLS 374

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
             L  D  TY  ++   C+ G V+    LL+ M  DG 
Sbjct: 375 VGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGH 412



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 56/137 (40%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           I +A+    +  E  F +   T   +L  L + K  +  WG  + + E      L  +N 
Sbjct: 82  IRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNI 141

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+  +C +G +     V   + +  L     +++ L+ G  R G ++E F L   M   G
Sbjct: 142 LMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASG 201

Query: 239 QSVLYSTYAHVMGALLR 255
                 TY+ ++  L +
Sbjct: 202 VQPDVYTYSVLINGLCK 218


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 2/204 (0%)

Query: 96  LDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           L KG P      + ++I  LCK  ++ E   VVD++   G   + ITF+ ++        
Sbjct: 425 LSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGN 484

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M+EA GL++ M+ + V PD+  YN L+  YC  G +     + + M  +++   + +Y+ 
Sbjct: 485 MKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNI 544

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++ G  +A R   A  +   M++ G +V   TYA V+G L R     +A   +      +
Sbjct: 545 ILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMN 604

Query: 274 IKLDTELFGSLGSKLIGLERFNEA 297
           +K D   F  +   +  + R  EA
Sbjct: 605 VKFDILTFNIVIRAMFKVGRRQEA 628



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 114/273 (41%), Gaps = 22/273 (8%)

Query: 49  RDLETVRYLLNKRARDC-CFNTANT---FNFITN-------TENSLSVLSDLCRTLARLD 97
           RD+  +   L KR   C C   A T   +N + N        +  L V   L RT     
Sbjct: 93  RDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRT----- 147

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
            G  P   +Y+ LI    K  ++D+A  +   M E G   + +T+  +++ L + K M++
Sbjct: 148 -GLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDK 206

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  ++  M    V P+   YN L+  Y   G    +  V K+M    L  D    ++ + 
Sbjct: 207 AERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMT 266

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDI 274
             C+ GR++EA  +   MV  G      +Y  ++      G  A       VMVC G  +
Sbjct: 267 ALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEG--V 324

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             D  +F +L +    L   +++  + ++M K+
Sbjct: 325 VPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQ 357



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 90/205 (43%), Gaps = 1/205 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++TLI    +L  +D++L + + M + G     ITF  ++S   R  R+++A   
Sbjct: 326 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK 385

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA-RTYDALVLGAC 219
              M +  V PD   Y+ L+   C + +L     ++  M  + +     + + +++   C
Sbjct: 386 FNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC 445

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GRV E   ++  ++  GQ     T+  ++     +G   +AV  +       ++ D  
Sbjct: 446 KEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIY 505

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            + +L        R ++A  + ++M
Sbjct: 506 TYNTLVDGYCKHGRIDDALTLFRDM 530



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 84/198 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y +LI  LCK K++D+A RV+  M   G   + +T++ ++   +     +E+  
Sbjct: 185 MPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVR 244

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    + PD+   N  +TA C  G +     +   M  +    D  +Y AL+ G  
Sbjct: 245 VFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYA 304

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            AG +     L   MV +G       +  ++ A  RLG   +++        + +  D  
Sbjct: 305 TAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDII 364

Query: 280 LFGSLGSKLIGLERFNEA 297
            F ++ S    L R ++A
Sbjct: 365 TFSTVISAFCRLGRLDDA 382



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/217 (19%), Positives = 85/217 (39%), Gaps = 2/217 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+N     ++++    +L +           T+N + +  ++  +  +  R 
Sbjct: 186 PNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRV 245

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              +      P     ++ +  LCK  +I EA  + D M   G     I++  +L     
Sbjct: 246 FKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYAT 305

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              +     L  VM    V PD   +N L+ AY   G +  +  + + M ++ +  D  T
Sbjct: 306 AGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT 365

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           +  ++   CR GR+++A      M+D G     + Y+
Sbjct: 366 FSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYS 402


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 2/204 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   Y+ L+     +  +     L+N+ A   C     T+N I N    +  LSD    
Sbjct: 468 PSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHL 527

Query: 93  LA-RLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +   + KG  P    Y+TL+   C+  K+D A+ +V+ M   G     IT++ +L+ L +
Sbjct: 528 IGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCK 587

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             + EE   + + M E   +P++  YN ++ + C    +     +L +M+ + L  D  +
Sbjct: 588 TAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVS 647

Query: 211 YDALVLGACRAGRVEEAFVLLRRM 234
           +  L+ G C+ G ++ A+ L R M
Sbjct: 648 FGTLITGFCKVGDLDGAYGLFRGM 671



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 134/321 (41%), Gaps = 26/321 (8%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L++ L  + LI  ++ +     + G  PD  T   Y+ ++N       L    +L+   
Sbjct: 475 TLIKGLCQQGLILPALQLMNEMAEKGCKPDIWT---YNLIINGLCKMGCLSDANHLIGDA 531

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTL 109
               C     T+N         +++   CR L +LD               P    Y+TL
Sbjct: 532 ITKGCIPDIFTYN---------TLVDGYCRQL-KLDSAIELVNRMWSQGMTPDVITYNTL 581

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           +  LCK  K +E + +   M E G   + IT++ I+  L   K++ EA  L+  MK   +
Sbjct: 582 LNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGL 641

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAF 228
           +PD+ ++  L+T +C  G+L    G+ + ME++  +     TY+ ++        ++ A 
Sbjct: 642 TPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMAL 701

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            L   M  +G      TY  ++    + G   Q  KF++    +        FG + + L
Sbjct: 702 RLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCL 761

Query: 289 IGLERFNEANFILKEMNKRDL 309
               +  EA  I+  M ++D+
Sbjct: 762 CVEHKVQEAVGIIHLMVQKDI 782



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 1/213 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P +  Y +L+   C+    D+A+ V       G   S I ++ ++  L +   +  
Sbjct: 429 KGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILP 488

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  LM  M E    PD+  YN ++   C  G L+  + ++     +    D  TY+ LV 
Sbjct: 489 ALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVD 548

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G CR  +++ A  L+ RM   G +    TY  ++  L +     + ++       +    
Sbjct: 549 GYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAP 608

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +   + ++   L   ++ NEA  +L EM  + L
Sbjct: 609 NIITYNTIIESLCNSKKVNEAVDLLGEMKSKGL 641



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 88/201 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++  I  LCK   +D A+R++  ++  G     +T++ ++  L R  R+ EA   
Sbjct: 328 PNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEEC 387

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M      P+   YN ++  YC KG +   + +LK    +    D  TY +LV G C+
Sbjct: 388 LHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQ 447

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  ++A  + +  +  G       Y  ++  L + G    A++ +     +  K D   
Sbjct: 448 DGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWT 507

Query: 281 FGSLGSKLIGLERFNEANFIL 301
           +  + + L  +   ++AN ++
Sbjct: 508 YNLIINGLCKMGCLSDANHLI 528



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 70/163 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           F    AY T++    +    D A  + D M E        TF+ ++  L +   + E+  
Sbjct: 257 FSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESER 316

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + + +  V P+L  +N  +   C +G+L     +L  +  E L  D  TY+ ++ G C
Sbjct: 317 LFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLC 376

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           R  RV EA   L +MV+ G      TY  ++    + G    A
Sbjct: 377 RKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDA 419



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y   I   C+  +   ALR++  M   G   +A+ +  +++        + A  L + M
Sbjct: 227 TYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEM 286

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E  + PD+T +N L+ A C KG +  +  +  K+ +  +  +  T++  + G C+ G +
Sbjct: 287 LECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSL 346

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGG 271
           + A  LL  +  +G      TY  V+  L R     +A + +  MV GG
Sbjct: 347 DRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGG 395



 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%)

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R  +++EA    E M      P + +YN ++      G       V  +M+++K+ +D  
Sbjct: 167 RKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVY 226

Query: 210 TYDALVLGACRAGRVEEAFVLLRRM 234
           TY   +   CR GR   A  LLR M
Sbjct: 227 TYTIRIKSFCRTGRPYAALRLLRNM 251


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 97/208 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  +I  LCK K +DEA+++   M       + +T+  ++  L +  R+ + W L
Sbjct: 332 PNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDL 391

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ +       ++  YN LL   C    +     +L KM++E +  D  TY  LV G C+
Sbjct: 392 IDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCK 451

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+++A  + + ++  G  +    Y  ++  L + G++ +A+  +          D   
Sbjct: 452 NGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVT 511

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + +L S L    +  +A  +L+EM  R+
Sbjct: 512 YETLISALFKNNKNGKAVKLLREMIARE 539



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 93/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI  LCK  ++ +A  V+ +M + G   + +T+  ++      K + +A  +
Sbjct: 262 PNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHV 321

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V+P++ +Y+ ++   C    +     + K+M  + +  +  TY +L+ G C+
Sbjct: 322 FNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCK 381

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+ + + L+  + + GQ     TY  ++  L +     +A+  +       I+ D   
Sbjct: 382 SGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMST 441

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L   L    R  +A  I +++
Sbjct: 442 YTTLVDGLCKNGRLKDAQRIYQDL 465



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 114/266 (42%), Gaps = 20/266 (7%)

Query: 46  GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSA 105
           G++ D  TV  LL    R  C N           + +L+    + R    LD+      +
Sbjct: 118 GYQPDTVTVNTLL----RGLCLNGK--------VKEALNFHDHVIRKRFHLDQ-----VS 160

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKRMEEAWGLMEV 163
           Y TLI  LCK  +   AL+++  + EG   +    I +  I+    + K + +A+ L   
Sbjct: 161 YGTLINGLCKSGETRAALQLLRKI-EGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSE 219

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M   ++ P++  +N L+  +C  G L    G+L +M    +  +  T++ L+ G C+ G 
Sbjct: 220 MIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGE 279

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           V++A  +L  M+  G      TY  +M     +    +A         R +  +   +  
Sbjct: 280 VKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSV 339

Query: 284 LGSKLIGLERFNEANFILKEMNKRDL 309
           + + L   +  +EA  + KEM+ +++
Sbjct: 340 MINGLCKNKMVDEAVKLFKEMHLKNM 365



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 91/207 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I   CK K + +A  +   M       + +TF+ ++       +++EA GL
Sbjct: 192 PDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGL 251

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    V+P++  +N L+   C +G +   + VL  M ++ +  +  TY +L+ G   
Sbjct: 252 LNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFL 311

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V +A  +   +   G +    +Y+ ++  L +     +AVK       +++  +T  
Sbjct: 312 VKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVT 371

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL   L    R ++   ++ E+N R
Sbjct: 372 YSSLIDGLCKSGRISDVWDLIDEINNR 398



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/160 (18%), Positives = 67/160 (41%), Gaps = 4/160 (2%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           FI N ++++S  + +      ++   P    ++ ++  L K+     A+     M   G 
Sbjct: 29  FIDNLDDAVSSFNHI----LHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGI 84

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
                TF+ +++  +   ++  A+ ++  + ++   PD    N LL   C  G +     
Sbjct: 85  QPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALN 144

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
               +  ++   D  +Y  L+ G C++G    A  LLR++
Sbjct: 145 FHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKI 184


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ +I  LCK K++DEA+ ++  M         +T++ ++  L +  R+  A  L
Sbjct: 288 PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNL 347

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M       D+  Y  LL A C   NL   + +  KM+E  +     TY AL+ G C+
Sbjct: 348 MNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCK 407

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR++ A  L + ++  G  +   TY  ++  L + G + +A+
Sbjct: 408 GGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEAL 450



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 92/211 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y TLI   C L ++  A  ++D M           ++ +++ L +   ++EA  
Sbjct: 182 FPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKN 241

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+ VM +  + P +  Y+ L+  YC  G +     +   M +  +  +  +Y+ ++ G C
Sbjct: 242 LLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLC 301

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +  RV+EA  LLR M+         TY  ++  L + G    A+  +     R    D  
Sbjct: 302 KCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVV 361

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            + SL   L   +  ++A  +  +M +R ++
Sbjct: 362 TYTSLLDALCKNQNLDKATALFMKMKERGIQ 392



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 93/207 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LCK K ++EA  +   M   G    AIT+  ++       ++  A+ L
Sbjct: 148 PNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSL 207

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    ++P +  YN L+ A C +GN+     +L  M +E +     TY  L+ G C 
Sbjct: 208 LDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCL 267

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G V+ A  +   MV  G +    +Y  ++  L +     +A+  +     +++  DT  
Sbjct: 268 VGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVT 327

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL   L    R   A  ++ EM+ R
Sbjct: 328 YNSLIDGLCKSGRITSALNLMNEMHHR 354



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 75/162 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+   C + ++  A ++   M + G   +  +++ +++ L + KR++EA  L
Sbjct: 253 PGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNL 312

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    + PD   YN L+   C  G +T+   ++ +M      AD  TY +L+   C+
Sbjct: 313 LREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCK 372

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              +++A  L  +M + G      TY  ++  L + G    A
Sbjct: 373 NQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNA 414



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 93/205 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y TL+  LCK+ +   A++++ ++ +     + + ++ I+  L + K + EA+ L   M
Sbjct: 117 SYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               + PD   Y  L+  +C  G L     +L +M  + +      Y+ L+   C+ G V
Sbjct: 177 DARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNV 236

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA  LL  M  +G      TY+ +M     +G    A +         +  +   +  +
Sbjct: 237 KEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIM 296

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            + L   +R +EA  +L+EM  +++
Sbjct: 297 INGLCKCKRVDEAMNLLREMLHKNM 321



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           N F  +     S SVL  +      L  G+ P     +TL+  LC   ++ ++L   D +
Sbjct: 53  NCFCHLGQMAFSFSVLGKI------LKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKV 106

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF +  +++  +L+ L +      A  L+ ++++    P++  YN ++   C    +
Sbjct: 107 VAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLV 166

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  +M+   +  DA TY  L+ G C  G++  AF LL  M+    +     Y  +
Sbjct: 167 NEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNIL 226

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL--GSKLIG 290
           + AL + G   +A   + V     IK     + +L  G  L+G
Sbjct: 227 INALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVG 269



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 78/171 (45%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           I F+ IL  L + K+   A  L + M+   +  +    N L+  +C  G +  +  VL K
Sbjct: 11  IEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGK 70

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           + +     D  T + L+ G C  G V+++     ++V  G  + + +Y  ++  L ++G 
Sbjct: 71  ILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGE 130

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              AVK + +   R  + +  ++ ++   L   +  NEA  +  EM+ R +
Sbjct: 131 TRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 5/149 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ ++G L K+K+   A+ +   M   G   + +T + +++      +M  ++ +
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  + ++   PD    N L+   C KG +  +     K+  +    D  +Y  L+ G C+
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCK 127

Query: 221 AGRVEEAFVLLRRMVDDGQS----VLYST 245
            G    A  LL RM++D  +    V+Y+T
Sbjct: 128 IGETRCAVKLL-RMIEDRSTRPNVVMYNT 155


>gi|302763057|ref|XP_002964950.1| hypothetical protein SELMODRAFT_406577 [Selaginella moellendorffii]
 gi|300167183|gb|EFJ33788.1| hypothetical protein SELMODRAFT_406577 [Selaginella moellendorffii]
          Length = 464

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 33/236 (13%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI---------------- 144
           P + AY+ +   L K   +DEA  ++ +M   GF L+A+TF+P+                
Sbjct: 194 PNRVAYNAMARGLSKAGLLDEAFDLMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKV 253

Query: 145 ---------------LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
                          L+++ +  R EEA G+ +VM E+   P +  +N LL  +C    +
Sbjct: 254 METMLLRNIEPNILTLNLILQAARPEEALGMTDVMVEMGFCPTIVTFNALLELFCNTDQM 313

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV-LYSTYAH 248
            + + +L+ M   K   +  TY  +V      GR+ EA   L ++V  G +  L    A+
Sbjct: 314 DSATELLETMARSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAY 373

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           V G L + G    A +F+ V      + +T  + SL      L R +EA  +L+EM
Sbjct: 374 VAG-LCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEM 428



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 1/168 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++ GF P    ++ L+   C   ++D A  +++ MA      + +T+  ++       RM
Sbjct: 289 VEMGFCPTIVTFNALLELFCNTDQMDSATELLETMARSKCKPNFVTYSIMVQKFAEMGRM 348

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA   +E +     +P+L   N  +   C  G +   S  L  M EE   A+  TY++L
Sbjct: 349 VEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSL 408

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           V G C+ GR++EA  +L  M+ +G     +TY  ++  L   G    A
Sbjct: 409 VEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYNVLIQGLCSAGQIEHA 456



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 69  TANTFN----FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALR 124
           T  TFN       NT+   S  ++L  T+AR  K  P    Y  ++ +  ++ ++ EA  
Sbjct: 296 TIVTFNALLELFCNTDQMDSA-TELLETMAR-SKCKPNFVTYSIMVQKFAEMGRMVEARA 353

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
            ++ +   G+  + +  +  ++ L +   M+ A   + VM E     +   YN L+  +C
Sbjct: 354 FLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFC 413

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
             G +     VL++M  E    D+ TY+ L+ G C AG++E AF+
Sbjct: 414 KLGRMDEAERVLEEMIAEGSLPDSTTYNVLIQGLCSAGQIEHAFM 458



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 9/131 (6%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGL-SAITFHPILSVLTRGKRMEEAWGLMEVM 164
           Y TL+   C   + DEA R+V+   + G    S +  H ++      K   EA GL   M
Sbjct: 136 YGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHSLML-----KGFSEA-GL--AM 187

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V+P+  AYN +       G L     ++  ME       A T++ +V   C++GR 
Sbjct: 188 AKRGVAPNRVAYNAMARGLSKAGLLDEAFDLMGVMESAGFALTAVTFNPVVEFLCKSGRP 247

Query: 225 EEAFVLLRRMV 235
           +EA  ++  M+
Sbjct: 248 DEACKVMETML 258


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P    Y +LI  LC   K D+A  ++  M + G  L+ I F+ I+    +  R+
Sbjct: 438 IDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 497

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E+  L ++M  I V PD+  YN L+   C  G +   + +L  M    +  D  TY  L
Sbjct: 498 IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTL 557

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G CR  R+++A  L + MV  G S    TY  ++  L  
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 598



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 5/260 (1%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PD  T   Y  ++ A    + ++    +LN   ++       T+N I +   S    
Sbjct: 231 GILPDVVT---YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 287

Query: 87  SDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +   TL ++  D   P    Y +L+  LCK  +  EA ++ D M + G      T+  +
Sbjct: 288 KEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTL 347

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L        + E   L+++M    + PD   +N L+ AY  +  +     V  KM +  L
Sbjct: 348 LQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +   Y  ++   C++G V++A +   +M+D+G +     Y  ++  L     + +A +
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 265 FVMVCGGRDIKLDTELFGSL 284
            ++    R I L+T  F S+
Sbjct: 468 LILEMLDRGICLNTIFFNSI 487



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 12/216 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T++    K    D+A      M + G     +T+  I++ L + + M++A  +
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V PD   YN +L  YC  G      G LKKM  + +  +  TY +L+   C+
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCK 318

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM------GALLRLGYYAQAVKFVMVCGGRDI 274
            GR  EA  +   M   G     +TY  ++      GAL+ +     A+  +MV  G  I
Sbjct: 319 NGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEM----HALLDLMVRNG--I 372

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + D  +F  L       E+ ++A  +  +M +  L 
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLN 408



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 3/188 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEE 156
            P   +Y+ L+  LC   +  EAL ++ +MA+   GG     ++++ +L+   +    ++
Sbjct: 160 IPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDK 219

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+     M +  + PD+  Y+ ++ A C    +     VL  M +  +  D  TY++++ 
Sbjct: 220 AYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 279

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C +G+ +EA   L++M  DG      TY+ +M  L + G   +A K       R ++ 
Sbjct: 280 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 339

Query: 277 DTELFGSL 284
           D   + +L
Sbjct: 340 DIATYRTL 347



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ D+M   G     IT++ ++      
Sbjct: 470 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLA 529

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + V PD+  Y  L+  YC    +     + K+M    +  +  TY
Sbjct: 530 GKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 589

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G     R   A  L   +   G  +  STY  ++  L +     +A++       
Sbjct: 590 NIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 649

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D++L+T  F  +   L+   R +EA
Sbjct: 650 TDLQLETRTFNIMIGALLKCGRMDEA 675



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 16/251 (6%)

Query: 76  ITNTENSLSVLSDLCRTLARLDKGFP----------RKSA--YDTLIGRLCKLKKIDEAL 123
           +T T ++ ++L   C    RLD GF           R  A  +  L+  LC  K+  +A+
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 124 RVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR---VSPDLTAYNYL 179
            +V   M E G      +++ +L  L    R +EA  L+ +M + R     PD+ +YN +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           L  +  +G+         +M +  +  D  TY +++   C+A  +++A  +L  MV +G 
Sbjct: 208 LNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 267

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
                TY  ++      G   +A+  +       ++ +   + SL + L    R  EA  
Sbjct: 268 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK 327

Query: 300 ILKEMNKRDLK 310
           I   M KR L+
Sbjct: 328 IFDSMTKRGLE 338



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 90/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI    K +K+D+A+ V   M + G   + + +  ++ VL +   +++A   
Sbjct: 374 PDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLY 433

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  ++P++  Y  L+   C          ++ +M +  +  +   +++++   C+
Sbjct: 434 FEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCK 493

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY  ++      G   +A K +       +K D   
Sbjct: 494 EGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVT 553

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +G+L +    + R ++A  + KEM
Sbjct: 554 YGTLINGYCRVSRMDDALALFKEM 577



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 79/189 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   C   K+DEA +++  M   G     +T+  +++   R  RM++A  L
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALAL 573

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    VSP++  YN +L          A   +   + +     +  TY+ ++ G C+
Sbjct: 574 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCK 633

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
               +EA  + + +      +   T+  ++GALL+ G   +A           +  D   
Sbjct: 634 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRT 693

Query: 281 FGSLGSKLI 289
           +  +   LI
Sbjct: 694 YSLMAENLI 702



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 1/144 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK    DEALR+   +      L   TF+ ++  L +  RM+EA  L   
Sbjct: 622 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAA 681

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
                + PD+  Y+ +      +G+L     +   MEE    AD+R  +++V    + G 
Sbjct: 682 HSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGD 741

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYA 247
           +  A   L  M+D+    L ++ A
Sbjct: 742 ITRAGTYL-FMIDEKHFSLEASTA 764


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 37/249 (14%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLCR 91
            P+   Y  LV A   E+D +TV  LL++ R R C  N                       
Sbjct: 1582 PSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVV--------------------- 1620

Query: 92   TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
                          Y  L+  L K  +  EAL   D + E G    A  ++ ++ +L R 
Sbjct: 1621 -------------TYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 1667

Query: 152  KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             R+E+A+ ++E M+   ++P++T +N L++A C          +L KMEE+    D +TY
Sbjct: 1668 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 1727

Query: 212  DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVC 269
              L+   C+   V+    L+  M     S  +STY  ++  L R G  AQ+  F+  MV 
Sbjct: 1728 TPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVS 1787

Query: 270  GGRDIKLDT 278
             G   K +T
Sbjct: 1788 KGFAPKQET 1796



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 106/228 (46%), Gaps = 10/228 (4%)

Query: 67   FNTANTFNFITNTENSLSVLSDLC--RTLARLDKGF--------PRKSAYDTLIGRLCKL 116
            F+  + F  + +T+    +L  LC  R++ R    F        P +++++TL+   CK 
Sbjct: 1503 FHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKA 1562

Query: 117  KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
            + + EAL  ++ M + GF  S +T+  ++      K  +  + L++ M++ R  P++  Y
Sbjct: 1563 RMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTY 1622

Query: 177  NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
              L+ A    G          K++E+ +  DA  Y++L+    RAGR+E+A+ ++  M  
Sbjct: 1623 TILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRT 1682

Query: 237  DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
             G +   +T+  ++ A         A+K ++    +    D + +  L
Sbjct: 1683 TGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPL 1730


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 89/168 (52%), Gaps = 1/168 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P    + +L+  LC + K ++A  +   + + G  L  + F+ ++  L R  R+
Sbjct: 404 IDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRV 463

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L+++M  + V PD+ +YN L+  +C  G +   + +L  +    L  D  TY+ L
Sbjct: 464 MEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTL 523

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C+A R+++A+ L R M+  G +    TY  ++  L + G +++A
Sbjct: 524 LHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEA 571



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 5/183 (2%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           RLD  F     ++TL+  LC+  ++ EA R++D+M   G     I+++ ++       R+
Sbjct: 444 RLDTVF-----FNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRI 498

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  L++V+  I + PD   YN LL  YC    +     + ++M  + L  D  TY+ +
Sbjct: 499 DEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTI 558

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G  + GR  EA  L   M++    +   TY  ++  L +  +  +A K       +D+
Sbjct: 559 LHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDL 618

Query: 275 KLD 277
           +LD
Sbjct: 619 QLD 621



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 90/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK  +  EA  + D +   G   +   +  +L        + E    
Sbjct: 270 PDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSF 329

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M    VSPD   +N +  AY  K  +     +  KM +++L  +  TY AL+   C+
Sbjct: 330 LDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCK 389

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV++A +   +M+D+G +     ++ ++  L  +  + +A +       + I+LDT  
Sbjct: 390 LGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVF 449

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F +L   L    R  EA  ++  M
Sbjct: 450 FNTLMCNLCREGRVMEAQRLIDLM 473



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 3/199 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+   C   +IDEA +++D++   G     +T++ +L    + +R+++A+ L
Sbjct: 480 PDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSL 539

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    ++PD+  YN +L      G  +    +   M   +   +  TY+ ++ G C+
Sbjct: 540 FREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCK 599

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V+EAF +   +      +   T   ++GALL+ G    A+          +  D E 
Sbjct: 600 NNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVET 659

Query: 281 FGSLGSKLI---GLERFNE 296
           +  +   LI    LE  +E
Sbjct: 660 YCLIAENLIKEGSLEELDE 678



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 100/251 (39%), Gaps = 26/251 (10%)

Query: 52  ETVRYLLNKRARDCCFNTA-NTFNFITNTENSLSVLSDLCRTLARLDKGFPR-------- 102
           E V  L N+  R+C    A ++F +         ++   CR + RL  GF          
Sbjct: 71  ELVVSLFNRMIRECSIKVAPSSFTYTI-------LIGCFCR-MGRLKHGFAAFGLILKTG 122

Query: 103 -----KSAYDTLIGRLCKLKKIDEALRV-VDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
                   +  L+  LC  K++DEA  + +  M E G      ++  +L      KR EE
Sbjct: 123 WRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEE 182

Query: 157 AWGLMEVMKEI---RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           A  L+ +M +      +P++  Y  ++   C    +    GV + M ++ +  +  TY  
Sbjct: 183 ALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTC 242

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+ G    G+ +E   +L+ M   G       YA ++  L + G   +A         + 
Sbjct: 243 LIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKG 302

Query: 274 IKLDTELFGSL 284
           IK +  ++G L
Sbjct: 303 IKPNVTIYGIL 313



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 1/159 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I  LCK   +DEA ++   +      L   T + ++  L +G R E+A  L   + 
Sbjct: 590 YNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATIS 649

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+  Y  +      +G+L     +   MEE     ++R  +ALV      G + 
Sbjct: 650 AYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIN 709

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            A   L ++ +   S+  ST + ++    R G Y Q  K
Sbjct: 710 RAGAYLSKLDEKNFSLEASTTSMLISIYSR-GEYQQLAK 747



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 86/204 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ +     K   IDEA+ + D M +     + +T+  ++  L +  R+++A   
Sbjct: 340 PDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLK 399

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  ++PD+  ++ L+   C          +  ++ ++ +  D   ++ L+   CR
Sbjct: 400 FNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCR 459

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV EA  L+  M+  G      +Y  ++      G   +A K + V     +K D   
Sbjct: 460 EGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVT 519

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L        R ++A  + +EM
Sbjct: 520 YNTLLHGYCKARRIDDAYSLFREM 543



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 38/214 (17%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS-AITFHPILSVLTRGKRMEEAWG 159
           P    Y  LIG  C++ ++        ++ + G+ ++  + F  +L  L   KR++EA  
Sbjct: 90  PSSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEA-- 147

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
                                           T  +L++M E     D  +Y  L+ G C
Sbjct: 148 --------------------------------TDILLRRMPEFGCTPDVFSYSILLKGFC 175

Query: 220 RAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
              R EEA  LL  M DDG    +    TY  V+  L +     +A         + ++ 
Sbjct: 176 NEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRP 235

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +   +  L    + + ++ E   +L+EM+   L+
Sbjct: 236 NNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQ 269


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 70/139 (50%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y++LI  LC   KI+EA+ + D M   G   + IT+H +++   +   M+EA  
Sbjct: 328 IPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALD 387

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + +K     P    YN L+ AYC  G +     + ++ME E +  D  TY+ L+ G C
Sbjct: 388 MFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLC 447

Query: 220 RAGRVEEAFVLLRRMVDDG 238
           R G +E A  L  ++ + G
Sbjct: 448 RNGNIEAAKKLFDQLTNKG 466



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 103/211 (48%), Gaps = 4/211 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS---VLTRGKRMEEA 157
           P    ++ +I  LCK  K+++A  V++ M   G+  + ++++ ++     L    +M +A
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKA 280

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             +++ M E  VSP+LT +N L+  +    NL  +  V K+M ++ +  +  TY++L+ G
Sbjct: 281 DAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLING 340

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  G++ EA  +  +MV  G      TY  ++    + G   +A+       G+  +  
Sbjct: 341 LCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPT 400

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           T ++  L      L + ++  F LKE  +R+
Sbjct: 401 TRMYNMLIDAYCKLGKIDDG-FALKEEMERE 430



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 114/239 (47%), Gaps = 22/239 (9%)

Query: 40  DLVNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFITN-----TENSLSVLSDLCRTL 93
           D + +AG + +L T   L+N   ++     A + F+ +       T    ++L D    L
Sbjct: 355 DKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKL 414

Query: 94  ARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            ++D GF            P    Y+ LI  LC+   I+ A ++ D +   G     +TF
Sbjct: 415 GKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLP-DLVTF 473

Query: 142 HPILS-VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           H ++    +RG+  + A  L++ M ++ + P    YN ++  YC +GNL A + +  +ME
Sbjct: 474 HILMEGYCSRGESRKAAM-LLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQME 532

Query: 201 EE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           +E +L  +  +Y+ L+ G  + G++E+A +LL  M++ G      TY  V   ++  G+
Sbjct: 533 KERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKGF 591



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 1/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + ++ LI    K   +  +L+V   M +     + IT++ +++ L  G ++ EA G+
Sbjct: 294 PNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGM 353

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    V P+L  Y+ L+  +C  G +     +   ++ +      R Y+ L+   C+
Sbjct: 354 RDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCK 413

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++++ F L   M  +G      TY  ++  L R G    A K       + +  D   
Sbjct: 414 LGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLP-DLVT 472

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F  L           +A  +LKEM+K  LK
Sbjct: 473 FHILMEGYCSRGESRKAAMLLKEMSKMGLK 502



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 79/168 (47%), Gaps = 3/168 (1%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G+ LSA++  P++  L +  R  +   L + M   ++ P++  +N ++ A C  G +   
Sbjct: 183 GYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACR---AGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
             V++ M+      +  +Y+ L+ G C+    G++ +A  +L+ MV++  S   +T+  +
Sbjct: 243 RDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNIL 302

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           +    +      ++K       +D+  +   + SL + L    + NEA
Sbjct: 303 IDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEA 350


>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 462

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 10/203 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAW 158
           P    Y+ L+  LCK K +      VD M +  F +    ++F  ++  +   K + EA 
Sbjct: 191 PDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDD-FDVKPDLVSFTILIDNVCNSKNLREAM 249

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  +      PD   YN ++  +C     +   GV KKM+EE +  D  TY+ L+ G 
Sbjct: 250 YLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAIGVYKKMKEEGVEPDQITYNTLIYGL 309

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-----CGGRD 273
            ++GRVEEA + L+ MVD G     +TY  +M  + R G    A+  +       C   D
Sbjct: 310 SKSGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPND 369

Query: 274 IKLDTELFGSLGSKLI--GLERF 294
              +T L G   ++L+  G+E +
Sbjct: 370 CTYNTLLHGLCKARLMDKGMELY 392



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T++   C L K  EA+ V   M E G     IT++ ++  L++  R+EEA   ++ M 
Sbjct: 267 YNTIMKGFCTLSKGSEAIGVYKKMKEEGVEPDQITYNTLIYGLSKSGRVEEARMYLKTMV 326

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +    PD   Y  L+   C KG       +L++ME      +  TY+ L+ G C+A  ++
Sbjct: 327 DAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMD 386

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +   L   M   G  +  + YA ++ +L++ G  A+A +            D   + +L 
Sbjct: 387 KGMELYELMKSSGVKLETNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLTDASAYSTLE 446

Query: 286 SKLIGLERFNEANFI 300
           + L  L++  E   +
Sbjct: 447 TTLKWLKKAKEQGLV 461



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 7/238 (2%)

Query: 74  NFITNTENSLSVLSDLCRTLARLDKGFPR----KSAYDTLIGRLCKL--KKIDEALRVVD 127
           N +  +  S++ + D  +    + K  P     +S +  L+   C+     I    RV++
Sbjct: 88  NSVLQSYASIAAVDDTVKLFQHILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLN 147

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           +M   G     +T    +  L    R++EA  LM+ + E    PD   YN+LL   C   
Sbjct: 148 LMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCK 207

Query: 188 NLTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +L      + +M ++  +  D  ++  L+   C +  + EA  L+ ++ + G       Y
Sbjct: 208 DLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLY 267

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +M     L   ++A+          ++ D   + +L   L    R  EA   LK M
Sbjct: 268 NTIMKGFCTLSKGSEAIGVYKKMKEEGVEPDQITYNTLIYGLSKSGRVEEARMYLKTM 325



 Score = 37.7 bits (86), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 20/159 (12%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
            +KSG    E    Y   +V+A G+E D  T   L+N   R                  S
Sbjct: 309 LSKSGRV--EEARMYLKTMVDA-GYEPDTATYTSLMNGMCR---------------KGES 350

Query: 83  LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           L  LS L    AR     P    Y+TL+  LCK + +D+ + + ++M   G  L    + 
Sbjct: 351 LGALSLLEEMEAR--GCAPNDCTYNTLLHGLCKARLMDKGMELYELMKSSGVKLETNGYA 408

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
            ++  L +  ++ EA+ + +   + +   D +AY+ L T
Sbjct: 409 TLVRSLVKSGKVAEAYEVFDYAVDSKSLTDASAYSTLET 447


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 134/304 (44%), Gaps = 28/304 (9%)

Query: 20  TRSFTK-SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFIT 77
            R F + +G  PD  T   Y  L+ A    RDLE+ + ++ + R   C  N   T+N   
Sbjct: 230 VRGFMEGAGISPDVYT---YSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVV-TYN--- 282

Query: 78  NTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRV 125
                 +++  LCR  A +++ F            P    Y  +I  LCK  + D+A  +
Sbjct: 283 ------TLIGGLCRAGA-IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCL 335

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           +D M+  G   + + +  ++    R    +EA+ +++ M    V P+   Y+ L+   C 
Sbjct: 336 LDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCK 395

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G +   S +LK+M +    AD  TY+ ++ G  R    EEAF+LL  M   G S    T
Sbjct: 396 LGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYT 455

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y+ ++  L ++G   +A   +       +K +  ++  L S       F+ A   LK+M 
Sbjct: 456 YSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMT 515

Query: 306 KRDL 309
           + +L
Sbjct: 516 RENL 519



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           VLS + R L+  D+G  R    D L+    K  ++ +   VV +M + G   S    + +
Sbjct: 156 VLSSVHRALSGSDQGR-RPVVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGL 214

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L  L R   ++  W +   M+   +SPD+  Y+ L+ AYC   +L +   V+++M E   
Sbjct: 215 LKDLLRADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGC 274

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +  TY+ L+ G CRAG +EEAF   + M D G      TY  ++  L + G   QA  
Sbjct: 275 SLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKC 334

Query: 265 FV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
            +  M C G  +  +  ++ +L    +     +EA  I+KEM+
Sbjct: 335 LLDEMSCAG--LMPNVVVYSTLIDGFMRQGNADEAFKIVKEMS 375



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 83/165 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  YD LI  LCKL ++  A R++  M + G+    +T++ ++    R    EEA+ L
Sbjct: 381 PNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLL 440

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  +SP++  Y+ ++   C  G     SG+L++M  + L  +A  Y  L+ G CR
Sbjct: 441 LNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCR 500

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G    A   L++M  +  +     Y  ++  L  +G   +A+++
Sbjct: 501 EGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEY 545



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 82/183 (44%)

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           +V   M   G      T+  ++    + + +E A  ++E M+E   S ++  YN L+   
Sbjct: 229 KVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGL 288

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C  G +    G  K+ME+  L  D  TY A++ G C+ GR ++A  LL  M   G     
Sbjct: 289 CRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNV 348

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
             Y+ ++   +R G   +A K V       ++ +   + +L   L  L R   A+ ILK+
Sbjct: 349 VVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQ 408

Query: 304 MNK 306
           M K
Sbjct: 409 MTK 411



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 4/219 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y TLI    +    DEA ++V  M+  G   + IT+  ++  L +  RM  A  
Sbjct: 345 MPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASR 404

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +++ M +I    D   YN ++  +  + N      +L +M +  +  +  TY  ++ G C
Sbjct: 405 ILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLC 464

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G  E A  LL +M+ DG       YA ++    R G ++ A + +      ++  D  
Sbjct: 465 QIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLY 524

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDY 318
            + SL   L  + + +EA     EM    L+ GF+  D+
Sbjct: 525 CYNSLIIGLSNVGKMDEAIEYYDEM----LEKGFQPNDF 559



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 19/228 (8%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFITNT-------ENSL 83
           +P    Y  L++      +LE    LL++       N+  N  +FI           ++L
Sbjct: 555 QPNDFTYGGLIHGYSMAGNLEKAEQLLHQM-----LNSGLNPNDFIYAQILEGYFKSDNL 609

Query: 84  SVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
             +S   +++  L+KG  P    Y  +I  L     +  A+ V+ ++ + G    ++ + 
Sbjct: 610 EKVSSTLKSM--LEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYG 667

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++S   +   ME+A GL++ M +  + P ++ YN L+  +C   +++    +   +  +
Sbjct: 668 SLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICK 727

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYA 247
            L  +  TY  L+ G C+AG + +A  L   M+ +G    + +YS  A
Sbjct: 728 GLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLA 775



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 95/248 (38%), Gaps = 35/248 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LC++ + + A  +++ M   G   +A  + P++S   R      A   
Sbjct: 451 PNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACET 510

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    ++PDL  YN L+      G +        +M E+    +  TY  L+ G   
Sbjct: 511 LKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSM 570

Query: 221 AGRVEEAFVLLRRMVDDG------------------------QSVLYST----------- 245
           AG +E+A  LL +M++ G                         S L S            
Sbjct: 571 AGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRL 630

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y  V+  L   G+   AV  + V     +  D+ ++GSL S         +A  +L EM 
Sbjct: 631 YGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMA 690

Query: 306 KRDLKMGF 313
           K+ ++ G 
Sbjct: 691 KKGIEPGI 698



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 28/242 (11%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           ++  L +   +  +V V     K+G  PD   S  Y  L++      D+E    LL++ A
Sbjct: 634 VIHNLSSSGHMQAAVSVLSVIEKNGLVPD---SLIYGSLISGFCKAADMEKAVGLLDEMA 690

Query: 63  RD------CCFNT-------ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTL 109
           +        C+N        ++  +   N  NS+     +C+ L       P    Y TL
Sbjct: 691 KKGIEPGISCYNALIDGFCKSDDISHARNIFNSI-----ICKGLP------PNCVTYTTL 739

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           I   CK   I +A+ + + M   G    A  +  + +  +    +++A  + E M   R 
Sbjct: 740 IDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIA-RG 798

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
              ++++N L+  +C +G L  T   L  M ++ +     T + +V+G   AG++ EA  
Sbjct: 799 YAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHT 858

Query: 230 LL 231
           + 
Sbjct: 859 IF 860



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 37/193 (19%), Positives = 79/193 (40%), Gaps = 3/193 (1%)

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
            L+K+   L+    M E G       +  ++  L+    M+ A  ++ V+++  + PD  
Sbjct: 608 NLEKVSSTLKS---MLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSL 664

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            Y  L++ +C   ++    G+L +M ++ +      Y+AL+ G C++  +  A  +   +
Sbjct: 665 IYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSI 724

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           +  G      TY  ++    + G    A+          +  D  ++  L +        
Sbjct: 725 ICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDL 784

Query: 295 NEANFILKEMNKR 307
            +A FI +EM  R
Sbjct: 785 QQALFITEEMIAR 797



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 6/155 (3%)

Query: 87  SDLCRTLARLD----KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           +D+ + +  LD    KG  P  S Y+ LI   CK   I  A  + + +   G   + +T+
Sbjct: 677 ADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTY 736

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++    +   + +A  L   M    V+PD   Y+ L       G+L     + ++M  
Sbjct: 737 TTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIA 796

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
               A   +++ LV G C+ G+++E    L  M+D
Sbjct: 797 RGY-AIISSFNTLVHGFCKRGKLQETVKFLHVMMD 830


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 82/162 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK  K+DEA +++  M+E G   S +T++ ++    +   +++A+ +
Sbjct: 332 PNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M+     P+   YN L+   C K  +     +L KM E KL     TY++L+ G C+
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              +E A+ LL  M ++G      TY+  +  L + G   +A
Sbjct: 452 VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEA 493



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 112/243 (46%), Gaps = 20/243 (8%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR- 91
           P+   Y+ L++    E  ++    +L+    + C     T+N          ++  LC+ 
Sbjct: 367 PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYN---------ELICGLCKK 417

Query: 92  -----TLARLDKGFPRKSA-----YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
                 +A L+K   RK +     Y++LI   CK+  ++ A R++ +M E G      T+
Sbjct: 418 RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTY 477

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
              +  L +  R+EEA  L + +K   V  +   Y  L+  YC  G +     +L++M  
Sbjct: 478 SVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLN 537

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           +    ++ TY+ L+ G C+  +++EA  L+ +M+  G      TY  ++G +L+ G +  
Sbjct: 538 DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDH 597

Query: 262 AVK 264
           A+K
Sbjct: 598 ALK 600



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 94/231 (40%), Gaps = 18/231 (7%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y+ LI  LCK KK+ EA  +V  M   G   + +T+  ++  + +    + 
Sbjct: 538 DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDH 597

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  +   M  +   PD+  Y   L AY  +G L     V+ KM EE +  D  TY  L+ 
Sbjct: 598 ALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLID 657

Query: 217 GACRAGRVEEAFVLLRRMVDDG-------QSVLYSTYAHV-----------MGALLRLGY 258
           G  R G    AF  L+ MVD G        S+L    +H            + ++     
Sbjct: 658 GYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLE 717

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           Y  A+K           +D  ++G+L +     ER  EA  ++  M +R +
Sbjct: 718 YEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGM 768



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y  LI  L    +  EAL + + M E G   +  T+  ++  L +  +M+E
Sbjct: 293 DNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDE 352

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  ++  M E  + P +  YN L+  YC +G +     +L  ME    G + RTY+ L+ 
Sbjct: 353 ARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELIC 412

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G C+  +V +A  LL +M++   S    TY
Sbjct: 413 GLCKKRKVHKAMALLNKMLERKLSPSLITY 442



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 97  DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
            KG  R   +Y  LI  LC+  +I+EAL++   M E     +  T+  ++  L+   R  
Sbjct: 257 QKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKV 316

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L   MKE    P++  Y  L+   C +  +     +L +M E+ L     TY+AL+
Sbjct: 317 EALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G C+ G +++AF +L  M  +       TY  ++  L +
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCK 416



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 87/209 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   C+ K +D A  V  IM + G   + +++  ++  L    R+ EA  L
Sbjct: 227 PDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKL 286

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E    P +  Y  L+ A    G       +  +M+E+    +  TY  L+ G C+
Sbjct: 287 FADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCK 346

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +++EA  +L  M + G      TY  ++    + G    A + + +        +T  
Sbjct: 347 ENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRT 406

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   L    + ++A  +L +M +R L
Sbjct: 407 YNELICGLCKKRKVHKAMALLNKMLERKL 435



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 99/285 (34%), Gaps = 57/285 (20%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDLCRTLA 94
           Y  L++       ++    LL +   D C   + T+N +      E  +   S L   + 
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
            +    P    Y  LIG + K    D AL+V + M   G+     T+   L        +
Sbjct: 572 TMGVK-PTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGML 630

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYL--------LTAYCF-----------KGNLTATSGV 195
           EE   ++  M E  + PDL  Y  L        LT   F           K +L   S +
Sbjct: 631 EEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSIL 690

Query: 196 LK----------------------------------KMEEEKLGADARTYDALVLGACRA 221
           +K                                  KM E     D   Y AL+ G C+ 
Sbjct: 691 IKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQ 750

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            R+EEA  L+  M + G S     Y  ++    +LG YA+AV+ V
Sbjct: 751 ERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLV 795



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 108 TLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAI--TFHPILSVLTRGKRMEEAWGLMEVM 164
           ++I   C ++ +   L V   M A+G F        ++ IL  L++   ++E   +   +
Sbjct: 126 SMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLEL 185

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
              ++SP++  +N ++  YC  GN+        K+ +  L  D  TY +L+LG CR   V
Sbjct: 186 LNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGV 245

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           + A+ +   M   G      +Y +++  L   G   +A+K 
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKL 286



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 12/208 (5%)

Query: 39  DDLV---NAAGHERDLETVRYLLNKRARDCCFNTANTFNFI-----TNTENSLSVLSDLC 90
           DD++   N  G   DL T   L++  AR     T   F+F+     T  + SL ++S L 
Sbjct: 634 DDVIAKMNEEGILPDLVTYTVLIDGYAR--LGLTHRAFDFLKCMVDTGCKPSLYIVSILI 691

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           + L+  ++   +++  +  I  +    + + AL++ + M E G  +    +  +++   +
Sbjct: 692 KNLSHENRM--KETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQ 749

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            +R+EEA GL+  MKE  +SP    YN LL   C  G       ++  M E  L     +
Sbjct: 750 QERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLES 809

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDG 238
           Y  LV G    G  E+A  +   ++  G
Sbjct: 810 YKLLVCGLYIEGSNEKAKAVFHGLLSCG 837



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 23/181 (12%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE--- 156
            P    Y  LI    +L     A   +  M + G   S      ++  L+   RM+E   
Sbjct: 646 LPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRS 705

Query: 157 ---------------AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
                          A  L E M E   + D++ Y  L+  +C +  L    G++  M+E
Sbjct: 706 EIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKE 765

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             +      Y++L+   C+ G   EA  L+  MV++G   L  +Y      LL  G Y +
Sbjct: 766 RGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESY-----KLLVCGLYIE 820

Query: 262 A 262
            
Sbjct: 821 G 821



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y  LI   C+ ++++EA  +V  M E G   S   ++ +L    +     EA  L++ 
Sbjct: 738 SIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDA 797

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M E  + P L +Y  L+     +G+      V   +       D   +  L+ G  +   
Sbjct: 798 MVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDL 857

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           V+E   L+  M + G      TY+ ++  L R
Sbjct: 858 VDECSELIDIMEEKGCQPNPLTYSLLIEGLER 889


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 2/204 (0%)

Query: 96  LDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           L KG P      + ++I  LCK  ++ E   VVD++   G   + ITF+ ++        
Sbjct: 496 LSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGN 555

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M+EA GL++ M+ + V PD+  YN L+  YC  G +     + + M  +++   + +Y+ 
Sbjct: 556 MKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNI 615

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++ G  +A R   A  +   M++ G +V   TYA V+G L R     +A   +      +
Sbjct: 616 ILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMN 675

Query: 274 IKLDTELFGSLGSKLIGLERFNEA 297
           +K D   F  +   +  + R  EA
Sbjct: 676 VKFDILTFNIVIRAMFKVGRRQEA 699



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 114/273 (41%), Gaps = 22/273 (8%)

Query: 49  RDLETVRYLLNKRARDC-CFNTANT---FNFITN-------TENSLSVLSDLCRTLARLD 97
           RD+  +   L KR   C C   A T   +N + N        +  L V   L RT     
Sbjct: 164 RDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRT----- 218

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
            G  P   +Y+ LI    K  ++D+A  +   M E G   + +T+  +++ L + K M++
Sbjct: 219 -GLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDK 277

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  ++  M    V P+   YN L+  Y   G    +  V K+M    L  D    ++ + 
Sbjct: 278 AERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMT 337

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDI 274
             C+ GR++EA  +   MV  G      +Y  ++      G  A       VMVC G  +
Sbjct: 338 ALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEG--V 395

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             D  +F +L +    L   +++  + ++M K+
Sbjct: 396 VPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQ 428



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 90/205 (43%), Gaps = 1/205 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++TLI    +L  +D++L + + M + G     ITF  ++S   R  R+++A   
Sbjct: 397 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK 456

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA-RTYDALVLGAC 219
              M +  V PD   Y+ L+   C + +L     ++  M  + +     + + +++   C
Sbjct: 457 FNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC 516

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GRV E   ++  ++  GQ     T+  ++     +G   +AV  +       ++ D  
Sbjct: 517 KEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIY 576

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            + +L        R ++A  + ++M
Sbjct: 577 TYNTLVDGYCKHGRIDDALTLFRDM 601



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 84/198 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y +LI  LCK K++D+A RV+  M   G   + +T++ ++   +     +E+  
Sbjct: 256 MPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVR 315

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    + PD+   N  +TA C  G +     +   M  +    D  +Y AL+ G  
Sbjct: 316 VFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYA 375

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            AG +     L   MV +G       +  ++ A  RLG   +++        + +  D  
Sbjct: 376 TAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDII 435

Query: 280 LFGSLGSKLIGLERFNEA 297
            F ++ S    L R ++A
Sbjct: 436 TFSTVISAFCRLGRLDDA 453



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/217 (19%), Positives = 85/217 (39%), Gaps = 2/217 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+N     ++++    +L +           T+N + +  ++  +  +  R 
Sbjct: 257 PNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRV 316

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              +      P     ++ +  LCK  +I EA  + D M   G     I++  +L     
Sbjct: 317 FKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYAT 376

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              +     L  VM    V PD   +N L+ AY   G +  +  + + M ++ +  D  T
Sbjct: 377 AGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT 436

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           +  ++   CR GR+++A      M+D G     + Y+
Sbjct: 437 FSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYS 473


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 7/219 (3%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG  P    Y +LI   C   +  +A +V + M   G   +  TF  I+S L R   M
Sbjct: 289 IDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMM 348

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L   MKE ++ P    YN ++  +C  GN++    +L +M  +    D  TY  L
Sbjct: 349 AEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPL 408

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C  GRV EA   +  +  D   +    Y+ ++    + G +  AV    V   R +
Sbjct: 409 ISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGV 468

Query: 275 KLDTELFGSLGSKLIGLERFNEANF---ILKEMNKRDLK 310
            +D   +  L   + G  R ++      +LKEM+   L+
Sbjct: 469 AMDLVCYAIL---IDGTAREHDTRALFGLLKEMHNHGLR 504



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 90/206 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y++LI   CKL     A    D M + G   + +T+  ++S         +A+ +   M 
Sbjct: 265 YNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMT 324

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +SP+   +  +++  C    +     +  +M+E K+     TY+ ++ G CR+G + 
Sbjct: 325 AKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNIS 384

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EAF LL  MV  G      TY  ++  L  +G  ++A +FV        KL+   + +L 
Sbjct: 385 EAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALV 444

Query: 286 SKLIGLERFNEANFILKEMNKRDLKM 311
                  RF +A    + M +R + M
Sbjct: 445 HGYCKEGRFKDAVSACRVMVERGVAM 470



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 9/205 (4%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+ LI  LCK ++I EAL + + + + G   + +T++          +  EA  L + M
Sbjct: 168 VYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYY---------GKFNEAELLFKEM 218

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E  +  +   Y+ L+ ++C +G +    G L KM +  +      Y++L+ G C+ G  
Sbjct: 219 GEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNA 278

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
             A      M+D G +    TY  ++      G + +A K       + I  +T  F ++
Sbjct: 279 SAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAI 338

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            S L       EA  +  EM +R +
Sbjct: 339 ISGLCRANMMAEAIRLFGEMKERKI 363



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 1/166 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P    Y  LI  LC + ++ EA   VD + +    L+ + +  ++    +  R ++
Sbjct: 396 KGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKD 455

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A     VM E  V+ DL  Y  L+     + +  A  G+LK+M    L  DA  Y  ++ 
Sbjct: 456 AVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMID 515

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              +AG ++EAF L   MVD+G      TY  ++  L + G   +A
Sbjct: 516 RHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKA 561



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  L+   CK  +  +A+    +M E G  +  + +  ++    R       +GL++ M
Sbjct: 439 CYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEM 498

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               + PD   Y  ++  +   GNL    G+   M +E    +  TY AL+ G C+AG +
Sbjct: 499 HNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLM 558

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           ++A +L +  +    +  + TY   +  L R G   +AV+ 
Sbjct: 559 DKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQL 599



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y   +  L +   +++A+++   M +G F  + ++++ ++    R  ++EEA  L
Sbjct: 575 PNHITYGCFLDHLTRGGNMEKAVQLHHAMLKG-FLATTVSYNILIRGFCRLGKIEEATKL 633

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  + PD   Y+ ++   C + NL     +   M ++ L  D   Y  LV G C 
Sbjct: 634 LHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCI 693

Query: 221 AGRVEEAFVLLRRMVDDG 238
           AG +E+AF L   M+  G
Sbjct: 694 AGELEKAFELRDEMIRRG 711



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 1/178 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I R  K   + EA  + DIM + G   + +T+  +++ L +   M++A  L
Sbjct: 505 PDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELL 564

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +      V+P+   Y   L      GN+     +   M +  L A   +Y+ L+ G CR
Sbjct: 565 SKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFL-ATTVSYNILIRGFCR 623

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            G++EEA  LL  M D+     Y TY+ ++    +     +A+K       + +K DT
Sbjct: 624 LGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDT 681


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 2/243 (0%)

Query: 69  TANTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVV 126
           T  TF  + N   S + + D  +    + K GF P    Y T+I  LCK+     AL+++
Sbjct: 140 THVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLL 199

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M E G     + ++ ++  L + +R  EA      M +  + P++  Y+ +L  +C  
Sbjct: 200 KKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNL 259

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G L   + + K+M    +  +  T+  LV G C+ G + EA  +   M ++G      TY
Sbjct: 260 GQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTY 319

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           + +M          +A K   +  G+       ++  L +      R NEA  +L EM  
Sbjct: 320 SALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYD 379

Query: 307 RDL 309
           RDL
Sbjct: 380 RDL 382



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+  LCK   I EA RV ++M E G    A T+  ++       +M+EA  L
Sbjct: 279 PNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKL 338

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M     +P +  YN L+  +C    L     +L +M +  L  D  TY  L+ G C+
Sbjct: 339 FDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQ 398

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           AGR + A  L + M   G      TY+ ++  L + G+  +A + +
Sbjct: 399 AGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLL 444



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   C   ++DEA ++ DIM   GF  S   ++ +++   + +R+ EA  L
Sbjct: 314 PDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTL 373

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  ++PD   Y+ L+  +C  G       + K+M    L  D+ TY  L+ G C+
Sbjct: 374 LSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCK 433

Query: 221 AGRVEEAFVLLRRM 234
            G ++EAF LL+ M
Sbjct: 434 HGHLDEAFRLLKAM 447



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+   C+  +   A ++   M   G    +IT+  +L  L +   ++EA+ L
Sbjct: 384 PDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRL 443

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+E ++ P +  YN L+   C  G L A   +   +  + +     TY  ++ G  +
Sbjct: 444 LKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLK 503

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G   EA  + R+MV +G      TY   +   LR G  + AV+ +    GR    D+  
Sbjct: 504 EGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSST 563

Query: 281 FGSL 284
           F  L
Sbjct: 564 FQML 567



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 1/216 (0%)

Query: 96  LDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G P     Y +++   C L +++EA  +   M       + +TF  ++  L +   +
Sbjct: 238 VDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMI 297

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  + E+M E  V PD   Y+ L+  YC +  +     +   M  +      R Y+ L
Sbjct: 298 LEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNIL 357

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C++ R+ EA  LL  M D   +    TY+ +M    + G    A K         +
Sbjct: 358 INGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGL 417

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             D+  +  L   L      +EA  +LK M +  ++
Sbjct: 418 LPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIE 453



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 3/200 (1%)

Query: 84  SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKK--IDEALRVVDIMAEGGFGLSAITF 141
           S +  LC+ +  L    P       LI  LC   +  +  A   +  M + G   + +TF
Sbjct: 86  STVISLCKQM-DLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTF 144

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             +L+ L    ++ +A  L + + ++  +P L  Y  ++   C  G+ T    +LKKMEE
Sbjct: 145 GTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEE 204

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           +    D   Y+ ++   C+  R  EA      MVD G      TY+ ++     LG   +
Sbjct: 205 KGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNE 264

Query: 262 AVKFVMVCGGRDIKLDTELF 281
           A        GR++  +T  F
Sbjct: 265 ATSLFKQMIGRNVMPNTVTF 284


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 37/249 (14%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLCR 91
            P+   Y  LV A   E+D +TV  LL++ R R C  N                       
Sbjct: 1623 PSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVV--------------------- 1661

Query: 92   TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
                          Y  L+  L K  +  EAL   D + E G    A  ++ ++ +L R 
Sbjct: 1662 -------------TYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 1708

Query: 152  KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             R+E+A+ ++E M+   ++P++T +N L++A C          +L KMEE+    D +TY
Sbjct: 1709 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 1768

Query: 212  DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVC 269
              L+   C+   V+    L+  M     S  +STY  ++  L R G  AQ+  F+  MV 
Sbjct: 1769 TPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVS 1828

Query: 270  GGRDIKLDT 278
             G   K +T
Sbjct: 1829 KGFAPKQET 1837



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 10/211 (4%)

Query: 67   FNTANTFNFITNTENSLSVLSDLC--RTLARLDKGF--------PRKSAYDTLIGRLCKL 116
            F+  + F  + +T+    +L  LC  R++ R    F        P +++++TL+   CK 
Sbjct: 1544 FHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKA 1603

Query: 117  KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
            + + EAL  ++ M + GF  S +T+  ++      K  +  + L++ M++ R  P++  Y
Sbjct: 1604 RMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTY 1663

Query: 177  NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
              L+ A    G          K++E+ +  DA  Y++L+    RAGR+E+A+ ++  M  
Sbjct: 1664 TILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRT 1723

Query: 237  DGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             G +   +T+  ++ A         A+K ++
Sbjct: 1724 TGIAPNVTTFNTLISAACDHSQAENALKLLV 1754


>gi|224089100|ref|XP_002308636.1| predicted protein [Populus trichocarpa]
 gi|222854612|gb|EEE92159.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+    ++++++ A+ +VD M   G   +AI ++PI+  L    R +E  G+
Sbjct: 294 PSVVTYGTLVEGYSRMRRVERAIELVDEMKREGIKSNAIVYNPIIDALAEAGRFKEVLGM 353

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME        P ++ YN L+  YC  G+L   S +LK M   ++     TY+       +
Sbjct: 354 MEHFFLCEEGPTISTYNSLVKGYCKAGDLVGASKILKMMISREVFPTPTTYNYFFRHFSK 413

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL----RLGYYAQAVKFVMVCGGRDIKL 276
             ++EE   L  +M++ G +    TY H++  +L    RL    Q  K  M   G D+ L
Sbjct: 414 CRKIEEGMNLYTKMIESGYTPDRLTY-HLLLKMLCEEERLDLAVQISK-EMRARGCDMDL 471

Query: 277 DTE-LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            T  +F  L   L  ++RF EA    ++M +R +
Sbjct: 472 ATSTMFTHL---LCKMQRFEEAFAEFEDMLRRGI 502



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 87/220 (39%), Gaps = 8/220 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P+   Y  LV      R +E    L+++  R+   + A  +N I +   +L+       
Sbjct: 293 KPSVVTYGTLVEGYSRMRRVERAIELVDEMKREGIKSNAIVYNPIID---ALAEAGRFKE 349

Query: 92  TLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
            L  ++  F     P  S Y++L+   CK   +  A +++ +M       +  T++    
Sbjct: 350 VLGMMEHFFLCEEGPTISTYNSLVKGYCKAGDLVGASKILKMMISREVFPTPTTYNYFFR 409

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
             ++ +++EE   L   M E   +PD   Y+ LL   C +  L     + K+M       
Sbjct: 410 HFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEERLDLAVQISKEMRARGCDM 469

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           D  T        C+  R EEAF     M+  G    Y T+
Sbjct: 470 DLATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVPQYLTF 509



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 17/186 (9%)

Query: 67  FNTANTFNFITNTENSLSV----LSDLC-------------RTLARLDKGFPRKSAYDTL 109
           F  A++ + I N+E   S+    L  LC             R + +     P    Y+ L
Sbjct: 208 FEYASSLDLIHNSEAGTSLFEILLDSLCKEGHVRVATDYFDRKVEKDPCWVPSVRIYNIL 267

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           +    + +K+  A R+   M +     S +T+  ++   +R +R+E A  L++ MK   +
Sbjct: 268 LNGWFRSRKLKHAERLWLEMKKKNVKPSVVTYGTLVEGYSRMRRVERAIELVDEMKREGI 327

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
             +   YN ++ A    G      G+++     + G    TY++LV G C+AG +  A  
Sbjct: 328 KSNAIVYNPIIDALAEAGRFKEVLGMMEHFFLCEEGPTISTYNSLVKGYCKAGDLVGASK 387

Query: 230 LLRRMV 235
           +L+ M+
Sbjct: 388 ILKMMI 393



 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 79/175 (45%), Gaps = 6/175 (3%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVD--IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
           S ++ L+  LCK   +  A    D  +  +  +  S   ++ +L+   R ++++ A  L 
Sbjct: 225 SLFEILLDSLCKEGHVRVATDYFDRKVEKDPCWVPSVRIYNILLNGWFRSRKLKHAERLW 284

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
             MK+  V P +  Y  L+  Y     +     ++ +M+ E + ++A  Y+ ++     A
Sbjct: 285 LEMKKKNVKPSVVTYGTLVEGYSRMRRVERAIELVDEMKREGIKSNAIVYNPIIDALAEA 344

Query: 222 GRVEEAFVLLRR--MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           GR +E   ++    + ++G ++  STY  ++    + G    A K + +   R++
Sbjct: 345 GRFKEVLGMMEHFFLCEEGPTI--STYNSLVKGYCKAGDLVGASKILKMMISREV 397


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 1/193 (0%)

Query: 93  LARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD G+P     ++ L+   CK+  +  A  V D ++  G   S ++F+ ++S   R 
Sbjct: 215 LEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRS 274

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
           K +EE + L  VM+  R+SPD+  Y+ L+   C +  +   +G+  +M E  L  +  T+
Sbjct: 275 KNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTF 334

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
             L+ G C+ G+++ A      M D G      TY  ++  L R G   +A K +    G
Sbjct: 335 TTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIG 394

Query: 272 RDIKLDTELFGSL 284
              K D   F +L
Sbjct: 395 NGFKPDKITFTTL 407



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 75/157 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  KID ALR  +IM + G     IT++ +++ L R   ++EA  L
Sbjct: 329 PNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKL 388

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M      PD   +  L+   C  G++ +   +  +M EE +  D   + AL+ G CR
Sbjct: 389 LNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCR 448

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GRV +A  +L+ M+  G      TY  V+    + G
Sbjct: 449 DGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKG 485



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 4/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TLI   C+ K ++E   +  +M          T+  +++ L +  R+EEA GL
Sbjct: 259 PSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGL 318

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E+ + P+   +  L+   C  G +       + M++  +  D  TY+AL+ G CR
Sbjct: 319 FDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCR 378

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA--VKFVMVCGGRDIKLDT 278
            G ++EA  LL  M+ +G      T+  +M    + G    A  +K  MV  G  I+LD 
Sbjct: 379 DGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEG--IELDD 436

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
             F +L S L    R  +A  +LK+M
Sbjct: 437 VAFTALISGLCRDGRVRDAERMLKDM 462



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +  GF P K  + TL+   CK   +D AL + D M E G  L  + F  ++S L R  R+
Sbjct: 393 IGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRV 452

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  +++ M      PD   Y  ++  +C KG++   + +LK+M+ +       TY+AL
Sbjct: 453 RDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNAL 512

Query: 215 VLGACRAGRVEEAFVLLRRMVD 236
           + G C+ G+++ A +LL  M++
Sbjct: 513 MNGFCKQGQMKNAKMLLHAMLN 534



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 1/167 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G  P    Y+ LI  LC+   + EA ++++ M   GF    ITF  ++    +   M+
Sbjct: 359 DRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMD 418

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  + + M E  +  D  A+  L++  C  G +     +LK M       D  TY  ++
Sbjct: 419 SALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVI 478

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              C+ G V+    LL+ M  DG+     TY  +M    + G    A
Sbjct: 479 DCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNA 525


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 99/216 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI     L K+  A  V   MA+ G   +  T+  ++  L + K ++EA  L
Sbjct: 306 PDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSL 365

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK   + PD+  Y  L+   C   +L     + KKM+E+ +  D  +Y  L+   C+
Sbjct: 366 FEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCK 425

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+E A    +R++  G  +   TY  ++  L +   + +A+       G+    D   
Sbjct: 426 GGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAIT 485

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLR 316
           F ++   L   +  ++A  IL+EM  R L+   K+R
Sbjct: 486 FKTIICALFEKDENDKAEKILREMIARGLQEARKVR 521



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 67/138 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LCK K +DEA+ + + M       + +T+  ++  L +   +E A  L
Sbjct: 574 PNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIAL 633

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MKE  + PD+ +Y  LL   C  G L     + +++  +    + + Y A++   C+
Sbjct: 634 LKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCK 693

Query: 221 AGRVEEAFVLLRRMVDDG 238
           AG  +EA  L  +M D G
Sbjct: 694 AGLFDEALDLQXKMEDKG 711



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 14/291 (4%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD------CCFNT-ANTFN 74
           SF +       P + +++ ++++  + +   TV  L  K   +      C  N   N F 
Sbjct: 50  SFDRMLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFC 109

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
            +T+   + SVL+++      L +G+ P     +TLI  LC   +I +AL   D +   G
Sbjct: 110 HLTHITFAFSVLANI------LKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQG 163

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
           F L+ +++  +++ L +    +    L+  ++   V PD+  YN ++ + C    L    
Sbjct: 164 FQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDAC 223

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            +  +M  + +  +  TY+ALV G C  G ++EAF LL  M     +    T+  ++ AL
Sbjct: 224 DLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDAL 283

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            + G    A   + V     IK D   + SL      L +   A ++   M
Sbjct: 284 GKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSM 334



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 94/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+     + ++  A  V   MA+ G   +   +  ++  L + K ++EA  L
Sbjct: 539 PDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSL 598

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK   + P++  Y  L+ A C   +L     +LK+M+E  +  D  +Y  L+ G C+
Sbjct: 599 FEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCK 658

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+E A  + +R++  G  +    Y  ++  L + G + +A+        +    D   
Sbjct: 659 SGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVT 718

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F  +   L   +  ++A  IL EM  R L
Sbjct: 719 FDIIIWALFEKDENDKAEKILXEMIARGL 747



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 109/247 (44%), Gaps = 11/247 (4%)

Query: 75  FITNTENSLSVLSDLCRT-----LARLDKGF------PRKSAYDTLIGRLCKLKKIDEAL 123
           F  N  +  ++++ LC+T     +ARL +        P    Y+T+I  LCK K + +A 
Sbjct: 164 FQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDAC 223

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +   M   G   + +T++ ++        ++EA+ L+  MK   ++PD+  +N L+ A 
Sbjct: 224 DLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDAL 283

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
             +G + A   VL  M +  +  D  TY++L+ G     +V+ A  +   M   G +   
Sbjct: 284 GKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNV 343

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++  L +     +A+        +++  D   + SL   L        A  + K+
Sbjct: 344 RTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKK 403

Query: 304 MNKRDLK 310
           M ++ ++
Sbjct: 404 MKEQGIQ 410



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 118/298 (39%), Gaps = 39/298 (13%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y  L+N      + + V  LL K            +N I ++     +L D C   + + 
Sbjct: 171 YRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMI 230

Query: 98  -KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
            KG  P    Y+ L+   C +  + EA  +++ M          TF+ ++  L +  +M+
Sbjct: 231 VKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMK 290

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL---------TATSGV----------- 195
            A  ++ VM +  + PD+  YN L+  Y F   +          A SGV           
Sbjct: 291 AAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMI 350

Query: 196 ---------------LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG-Q 239
                           ++M+ + +  D  TY +L+ G C+   +E A  L ++M + G Q
Sbjct: 351 DGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQ 410

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
             +YS Y  ++ AL + G    A +F      +   L+ + +  + + L   + F EA
Sbjct: 411 PDVYS-YTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEA 467



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL--------------- 148
             Y+ +I  LCK     EA+ +   M   G    AITF  I+  L               
Sbjct: 449 QTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILRE 508

Query: 149 --------TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
                    R  R++EA  ++ VM +  + PD+  Y  L+  Y     L     V   M 
Sbjct: 509 MIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMA 568

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           +  +  + + Y  ++ G C+   V+EA  L   M          TY  ++ AL +  +  
Sbjct: 569 QMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLE 628

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
           +A+  +       I+ D   +  L   L    R   A    KE+ +R L  G+ L
Sbjct: 629 RAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGA----KEIFQRLLVKGYHL 679



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 83/181 (45%), Gaps = 2/181 (1%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           ++ EA  V+ +M +       +T+  ++        ++ A  +   M ++ V+P++  Y 
Sbjct: 521 RLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYT 580

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++   C K  +     + ++M+ + +  +  TY +L+   C+   +E A  LL+ M + 
Sbjct: 581 IMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEH 640

Query: 238 G-QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
           G Q  +YS Y  ++  L + G    A +       +   L+ +++ ++ ++L     F+E
Sbjct: 641 GIQPDVYS-YTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDE 699

Query: 297 A 297
           A
Sbjct: 700 A 700


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 12/238 (5%)

Query: 74  NFITNTENSLSVLSD-LCRT---------LARLD-KGFPR-KSAYDTLIGRLCKLKKIDE 121
           N +T +  + S+L D  C+T         L  +D KGFP   +AY +LI  L K K+ + 
Sbjct: 371 NGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEA 430

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A  +   + E     SA  +  ++  L +  R  EA  L   MK+I  +PD+ AYN L++
Sbjct: 431 ANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMS 490

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
                G +      L+ MEE     D  +++ ++ G  R GR E+A  +  +M D     
Sbjct: 491 GLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKP 550

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
              +Y  ++G+L R G + +A K +   G R  + D   + S+   +  ++  +E NF
Sbjct: 551 DAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVDEDDEPNF 608



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 117/279 (41%), Gaps = 3/279 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLC 90
           +P     ++L+N  G    LE    L ++ R+  C  N       I     S +  S+  
Sbjct: 303 KPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAA 362

Query: 91  RTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
               ++      P    Y  LI   CK  ++++AL +++ M E GF      +  +++ L
Sbjct: 363 SWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINAL 422

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            + KR E A  L   +KE         Y  ++      G  +    +  +M++     D 
Sbjct: 423 GKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDV 482

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
             Y+AL+ G  RAG +EEAF  LR M ++G +   +++  ++  L R G   QA +  M 
Sbjct: 483 YAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMK 542

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                IK D   + ++   L     F EA  +++EM  R
Sbjct: 543 MKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSR 581



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 10/216 (4%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKG  P    Y  LI  L K  ++++A  V   M + G     +  + ++++  +  R+E
Sbjct: 264 DKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLE 323

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTA-YCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +A  L + M+ ++ +P++  YN ++ A +  K   +  +   +KM+   +   + TY  L
Sbjct: 324 DALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSIL 383

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV----CG 270
           + G C+  RVE+A +LL  M + G     + Y  ++ AL +   Y  A +  +     CG
Sbjct: 384 IDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCG 443

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
               ++   +  +LG       R +EA  +  EM K
Sbjct: 444 RSSARIYAVMIKNLGK----CGRPSEAVDLFNEMKK 475



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 4/192 (2%)

Query: 66  CFNTANTFN---FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122
           C  TA+T+N    +   E     + +L   +      FP    Y  L+    KL + D A
Sbjct: 162 CKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYA 221

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           +R+ D M   G   +A  +  +L++  +    E+A GL++ MK+   +P +  Y  L+  
Sbjct: 222 IRLFDEMKANGLHPTAKIYTTLLAIYFKSGD-EKALGLVQEMKDKGCAPTVFTYTELIKG 280

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
               G +     V   M ++    D    + L+    +AGR+E+A  L  +M     +  
Sbjct: 281 LGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPN 340

Query: 243 YSTYAHVMGALL 254
             TY  V+ AL 
Sbjct: 341 VVTYNTVIKALF 352


>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 402

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 1/142 (0%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y  LI  LC   +  EA+ +   M+E G       +  ++     G  ++E
Sbjct: 254 DNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDE 313

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A GL+E M E  + P++  YN L+  +C K N+    G+L KM E+ L  D  TY+ L+ 
Sbjct: 314 ASGLLEHMLENGLMPNVITYNALIKGFC-KKNVHKAMGLLSKMLEQNLVPDLITYNTLIA 372

Query: 217 GACRAGRVEEAFVLLRRMVDDG 238
           G C +G ++ A+ LL  M + G
Sbjct: 373 GQCSSGNLDSAYRLLSLMEESG 394



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 2/207 (0%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTL 93
           T   Y++L+++      +E ++ L  +   D       TFN + N    L  + +  + +
Sbjct: 119 TPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYV 178

Query: 94  ARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
             L +    P    Y + I   C+ K++D A +V   M + G   + +++  ++  L   
Sbjct: 179 TWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEA 238

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
           K+++EA  L+  MK+    P++  Y  L+ A C  G  +    + K+M E  +  D   Y
Sbjct: 239 KKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMY 298

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+   C    ++EA  LL  M+++G
Sbjct: 299 TVLIQSFCSGDTLDEASGLLEHMLENG 325



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI  L + KKIDEAL ++  M +     +  T+  ++  L    +  EA  L + M
Sbjct: 227 SYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQM 286

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E  + PD   Y  L+ ++C    L   SG+L+ M E  L  +  TY+AL+ G C+   V
Sbjct: 287 SESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCKKN-V 345

Query: 225 EEAFVLLRRMVDDG 238
            +A  LL +M++  
Sbjct: 346 HKAMGLLSKMLEQN 359



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 88  DLCRTLARLD------KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           D CRT+ + D      K  P+   Y+ L+  L +   ++E  R+   M E        TF
Sbjct: 101 DFCRTMRKGDSFEIKYKLTPK--CYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTF 158

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + +++   +   + EA   +  + +    PD   Y   +T +C +  + A   V K+M +
Sbjct: 159 NTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQ 218

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
                +  +Y  L+ G   A +++EA  LL +M DD       TY  ++ AL   G  ++
Sbjct: 219 NGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSE 278

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           A+          IK D  ++  L       +  +EA+ +L+ M
Sbjct: 279 AMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHM 321



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C    +DEA  +++ M E G   + IT++ ++    + K + +A GL
Sbjct: 293 PDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCK-KNVHKAMGL 351

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           +  M E  + PDL  YN L+   C  GNL +   +L  MEE  L  + RT
Sbjct: 352 LSKMLEQNLVPDLITYNTLIAGQCSSGNLDSAYRLLSLMEESGLVPNQRT 401


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 7/193 (3%)

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L + C+T        P    Y+  I  LCK  K+D+A R   +++  GF     T+  ++
Sbjct: 702 LDESCKTFL-----LPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLI 756

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
              +    ++EA+ L + M    + P++  YN L+   C   N+     +  K+ ++ L 
Sbjct: 757 HGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLF 816

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  TY+ L+ G C+ G ++ AF L  +M+++G S    TY+ ++  L + G   +++K 
Sbjct: 817 PNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKL 876

Query: 266 V--MVCGGRDIKL 276
           +  M+  G D KL
Sbjct: 877 LNQMIKAGVDSKL 889



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 2/213 (0%)

Query: 97  DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAE-GGFGLSAITFHPILSVLTRGKRM 154
           +KG  R    Y  LI   CK  K+DEA +V+  M E          +  ++    R  ++
Sbjct: 289 EKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKI 348

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M  + +  +L   N L+  YC +G +    GV+ +M +  L  D+ +Y+ L
Sbjct: 349 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 408

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G CR G   EAF L  +M+ +G      TY  ++  L R+G +  A++   +     +
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGV 468

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             D   + +L   L  +E F  A+ + K++  R
Sbjct: 469 APDEVGYSTLLDGLFKMENFEGASTLWKDILAR 501



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P + AY  LI   C+  KID+A+R++D M   G   +    + +++   +   + EA G+
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  + PD  +YN LL  YC +G+ +    +  KM +E +     TY+ L+ G CR
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  ++A  +   M+  G +     Y+ ++  L ++  +  A         R        
Sbjct: 450 VGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT 509

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F ++ S L  + +  EA  I  +M
Sbjct: 510 FNTMISGLCKMGKMVEAEEIFDKM 533



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 2/205 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P +  Y TL+  L K++  + A  +  DI+A G F  S ITF+ ++S L +  +M EA  
Sbjct: 470 PDEVGYSTLLDGLFKMENFEGASTLWKDILARG-FTKSRITFNTMISGLCKMGKMVEAEE 528

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + MK++  SPD   Y  L+  YC   N+     V   ME E +      Y++L+ G  
Sbjct: 529 IFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLF 588

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           ++ R+ E   LL  M   G +    TY  ++    + G   +A           +  +  
Sbjct: 589 KSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANII 648

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
           +  ++ S L  L R +EAN ++++M
Sbjct: 649 ICSTMVSGLYRLGRIDEANLLMQKM 673



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+   C+     EA  + D M + G   + +T++ +L  L R    ++A  +
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 459

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M +  V+PD   Y+ LL       N    S + K +          T++ ++ G C+
Sbjct: 460 WHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCK 519

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ EA  +  +M D G S    TY  ++    +     QA K         I    E+
Sbjct: 520 MGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEM 579

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + SL S L    R  E   +L EM  R L
Sbjct: 580 YNSLISGLFKSRRLVEXTDLLTEMGIRGL 608



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK   + +A +V   M       S   ++ ++S L + +R+ E   L
Sbjct: 540 PDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDL 599

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    ++P++  Y  L+  +C +G L        +M E  L A+      +V G  R
Sbjct: 600 LTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYR 659

Query: 221 AGRVEEAFVLLRRMVDDG 238
            GR++EA +L+++MVD G
Sbjct: 660 LGRIDEANLLMQKMVDHG 677



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 6/189 (3%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           T+N+L V  ++ +   R+    P   + ++L+  L K  +   A  V   M   G     
Sbjct: 172 TKNALYVFDNMGKC-GRI----PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDV 226

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
                +++   +  +++EA G ++ M+ + V P++  Y+ L+  Y   G++ A  GVLK 
Sbjct: 227 FMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKF 286

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLG 257
           M E+ +  +  TY  L+ G C+  +++EA  +LR M ++   V     Y  ++    R G
Sbjct: 287 MSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTG 346

Query: 258 YYAQAVKFV 266
               AV+ +
Sbjct: 347 KIDDAVRLL 355



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 59/126 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK + +D A R+   + + G   + +T++ ++    +   M+ A+ L
Sbjct: 782 PNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 841

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  +SP +  Y+ L+   C  G++  +  +L +M +  + +    Y  LV G  +
Sbjct: 842 KDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFK 901

Query: 221 AGRVEE 226
                E
Sbjct: 902 TSNYNE 907



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 6/189 (3%)

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL--RVVDI 128
           F F++  +N    +   C+ +  L +G  +    AY   +  LCK K     +   +V +
Sbjct: 89  FQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGV 148

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
             E  F  S   F  IL V       + A  + + M +    P L + N LL      G 
Sbjct: 149 YRE--FAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGE 206

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                 V ++M    +  D      +V   C+ G+V+EA   +++M + G      TY  
Sbjct: 207 THTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHS 266

Query: 249 VMGALLRLG 257
           ++   + LG
Sbjct: 267 LINGYVSLG 275



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK+  +D A ++ D M E G   S +T+  +++ L +   +E +  
Sbjct: 816 FPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMK 875

Query: 160 LMEVMKEIRVSPDLTAYNYLLTA 182
           L+  M +  V   L  Y  L+  
Sbjct: 876 LLNQMIKAGVDSKLIEYCTLVQG 898


>gi|357130244|ref|XP_003566760.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Brachypodium distachyon]
          Length = 579

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 122/297 (41%), Gaps = 19/297 (6%)

Query: 45  AGHERDLETVRYLLNKRARDCCFNTANTF--------NFITNTENSLSVL------SDLC 90
           AGH   L T+R+L+              F         F ++  ++LS L       D  
Sbjct: 72  AGHSHPLPTLRFLIALPPPLQPSPPHLAFLAHSLATTRFFSHALDALSHLLRLHPSHDAL 131

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
            TL    +  P  S    L+  L +  ++ +A R     A  G     + F+ +L+ L+R
Sbjct: 132 PTLLLSSQTAPHPSLPGLLVKALLRHARLRDAFRAAHRAAAAGAPPDTVAFNALLAALSR 191

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R +E W    VM    V P+   +N L+TA C   +     G L+++EE+    D  T
Sbjct: 192 AGRFDELWAARAVMARAEVRPNTHTFNILVTALCRGEDAERAQGFLEELEEQGFEPDVVT 251

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MV 268
           Y+ L+ G CR G++++A  L   M   G      ++  +M  L + G    A +    MV
Sbjct: 252 YNTLLSGYCRRGKLQDALHLFGVMPPRGVEPDLVSHTVLMDGLCKAGRLNDARRMFDRMV 311

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM-GFKLRDYYEINVK 324
             G  +  D   +  L +     +R  EA  +L EM    L   GF LR   E +VK
Sbjct: 312 HSG--VSPDAIAYSVLIAGYCNEQRVREARLLLMEMVGSGLSSEGFALRAVIESHVK 366



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 66/148 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ LIG LC+  +   A  +   M E G   S   ++ IL  L +   +++A  +   M
Sbjct: 391 SYNCLIGALCEDMRPHAARGLFKWMVEDGHSPSLEMYNMILDCLCQCDSVDDALDVKVEM 450

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V PD   Y  L+T  C  G       V+ +M E  L  +     ALV G C+ G +
Sbjct: 451 SSREVRPDFHTYQALVTCLCRLGKSLDGKSVMAEMIESGLQPNEAICTALVCGFCKEGYL 510

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + A ++L+  V D Q     +Y  +M A
Sbjct: 511 DRAELILKAFVLDFQLHCNESYNALMRA 538



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 98/250 (39%), Gaps = 36/250 (14%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           ++GF P    Y+TL+   C+  K+ +AL +  +M   G     ++   ++  L +  R+ 
Sbjct: 242 EQGFEPDVVTYNTLLSGYCRRGKLQDALHLFGVMPPRGVEPDLVSHTVLMDGLCKAGRLN 301

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA------- 208
           +A  + + M    VSPD  AY+ L+  YC +  +     +L +M    L ++        
Sbjct: 302 DARRMFDRMVHSGVSPDAIAYSVLIAGYCNEQRVREARLLLMEMVGSGLSSEGFALRAVI 361

Query: 209 ----------------------------RTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
                                        +Y+ L+   C   R   A  L + MV+DG S
Sbjct: 362 ESHVKVGKLLTCLNLVSPLRKYGVVIPLESYNCLIGALCEDMRPHAARGLFKWMVEDGHS 421

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
                Y  ++  L +      A+   +    R+++ D   + +L + L  L +  +   +
Sbjct: 422 PSLEMYNMILDCLCQCDSVDDALDVKVEMSSREVRPDFHTYQALVTCLCRLGKSLDGKSV 481

Query: 301 LKEMNKRDLK 310
           + EM +  L+
Sbjct: 482 MAEMIESGLQ 491


>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 636

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 88/199 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ LI    KL  I E+      M + GF  + I  + IL+ L + K   + W L E M 
Sbjct: 193 FEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEMG 252

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            I V  +   +N L    C  G++   +G L+KMEEE    D  TY+ L+    R GR+E
Sbjct: 253 RIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLE 312

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +AF L + M   G      +Y  +M  L RLG   +A +       R +  D  L+ +L 
Sbjct: 313 DAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLI 372

Query: 286 SKLIGLERFNEANFILKEM 304
                     EA  +L EM
Sbjct: 373 GAYCKDGMLQEARSLLHEM 391



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 1/181 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P   A + ++  L K+K   +   + + M   G   +A TF+ +  VL R   + + 
Sbjct: 220 GFVPNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKI 279

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            G +E M+E    PD+  YN L+ +Y  +G L     + K M    +  D  +Y +L+ G
Sbjct: 280 NGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRG 339

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            CR GRV EA  L  RM+D G       Y  ++GA  + G   +A   +    G  I  D
Sbjct: 340 LCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPD 399

Query: 278 T 278
           +
Sbjct: 400 S 400



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 1/215 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           ++GF P    Y+TLI    +  ++++A  +  IM   G     +++  ++  L R  R+ 
Sbjct: 288 EEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVR 347

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L   M +  + PD+  YN L+ AYC  G L     +L +M    +  D+ T   LV
Sbjct: 348 EAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILV 407

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G  R GR+  A  L+  +   G +V +  Y +++ +L R      A   +        +
Sbjct: 408 EGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQ 467

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            D++++  L          +EA  +  EM  R+ K
Sbjct: 468 PDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYK 502



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 91/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y +L+  LC+L ++ EA ++   M + G     + ++ ++    +   ++EA  L
Sbjct: 328 PDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSL 387

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M  I + PD      L+  Y  +G L +   ++ ++++  +      Y  L++  CR
Sbjct: 388 LHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCR 447

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R   A  LL R+++D        Y  ++ +  R    ++A+   +    R+ K  T+ 
Sbjct: 448 EDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDT 507

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL   +  + R  +   ++ EM
Sbjct: 508 YKSLIHCMCEINRSVDGEGLMVEM 531



 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 50/119 (42%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y+ LI   C+   + EAL +   M    +  +  T+  ++  +    R  +
Sbjct: 464 DSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVD 523

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
             GLM  M E  V PD      L+  YC +GN      +L    ++    D+ ++++LV
Sbjct: 524 GEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAQDFQFFDSESFNSLV 582



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 53/134 (39%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  LC+  +   A  +++ + E  F   +  ++ ++    R   + EA  L   M 
Sbjct: 438 YKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMI 497

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                P    Y  L+   C         G++ +M E ++  D     ALV G C+ G  +
Sbjct: 498 NRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNAD 557

Query: 226 EAFVLLRRMVDDGQ 239
           +A  LL     D Q
Sbjct: 558 KAESLLVSFAQDFQ 571


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 3/179 (1%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +GF P    Y TLI  LCK+     A+R++  M +     +   ++ I+  L + +++
Sbjct: 158 IGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQV 217

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+ L   M    +SPD+  YN L+ A C        + +L +M + K+  D  +++ +
Sbjct: 218 TEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGG 271
           V   C+ G+V EA  ++ +M+  G      TY  +M     L    +AVK    MVC G
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG 336



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 67  FNT-ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
           +NT  N +  I   + ++ +  ++CR      +  P    Y TLI  LC ++++ +A+ +
Sbjct: 398 YNTLINGYCKIQRIDKAMYLFGEMCR-----QELIPDTVTYSTLIHGLCHVERLQDAIAL 452

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
              M       + +T+  +L  L + + + EA  L++ ++   + PD+   N  +   C 
Sbjct: 453 FHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCR 512

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G L A   +   +  + L  D  TY  ++ G CR G ++EA  L R M ++G ++    
Sbjct: 513 AGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCI 572

Query: 246 YAHVMGALLRLGYYAQAVKFV 266
           Y  +    LR    ++A++ +
Sbjct: 573 YNTITRGFLRNNETSRAIQLL 593



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 73/166 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y+TLI   CK+++ID+A+ +   M         +T+  ++  L   +R+++A  
Sbjct: 392 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIA 451

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M      P+L  Y  LL   C    L     +LK +E   L  D +  +  + G C
Sbjct: 452 LFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMC 511

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           RAG +E A  L   +   G      TY+ ++  L R G   +A K 
Sbjct: 512 RAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKL 557



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 118/277 (42%), Gaps = 28/277 (10%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSL 83
           G  PD  T   Y+ L++A  +  + + V  LLN+           +FN + +    E  +
Sbjct: 231 GISPDIFT---YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKV 287

Query: 84  SVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           +   D+   +  + +G  P    Y  L+   C L ++DEA++V D M   G   + I+++
Sbjct: 288 TEAHDVVDKM--IQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYN 345

Query: 143 PILSVLTRGKR-------------------MEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +++   + +R                   M+EA  + + M      P++ +YN L+  Y
Sbjct: 346 TLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGY 405

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C    +     +  +M  ++L  D  TY  L+ G C   R+++A  L   MV   Q    
Sbjct: 406 CKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNL 465

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            TY  ++  L +  Y A+A+  +    G ++  D ++
Sbjct: 466 VTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQV 502



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 73/166 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + + TLI  +C   KI EAL + D M   GF    +T+  +++ L +      A  L
Sbjct: 129 PDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRL 188

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +    P++ AYN ++ + C    +T    +  +M  + +  D  TY++L+   C 
Sbjct: 189 LGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCN 248

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
               +    LL  MVD        ++  V+ AL + G   +A   V
Sbjct: 249 LCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVV 294



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 85/210 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P       LI   C L ++  A  V+  + + G      TF  ++  +    ++ EA  L
Sbjct: 94  PNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHL 153

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      PD+  Y  L+   C  GN +A   +L  M ++    +   Y+ ++   C+
Sbjct: 154 FDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCK 213

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +V EAF L   MV  G S    TY  ++ AL  L  +      +       I  D   
Sbjct: 214 DRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVS 273

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F ++   L    +  EA+ ++ +M +R ++
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVE 303



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 76/204 (37%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  + K+K     L +   M   G   +  T H +++      R+  A+ +
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  + ++   PD   +  L+   C +G +     +  KM  E    D  TY  L+ G C+
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G    A  LL  MV          Y  ++ +L +     +A         + I  D   
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL   L  L  +     +L EM
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEM 262


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 12/240 (5%)

Query: 82  SLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           +LS++ + C    +L   F            P    + TLI  LC   ++ EAL +VD M
Sbjct: 109 TLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRM 168

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E G   + IT + +++ L    ++ +A  L++ M E    P+   Y  +L   C  G  
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +L+KMEE K+  DA  Y  ++ G C+ G ++ AF L   M   G       Y  +
Sbjct: 229 ALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTL 288

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +      G +    K +     R I  D   F +L    +   +  EA  + KEM +R +
Sbjct: 289 IRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI 348



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 2/236 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y  L++    E  L+   ++L+      C     TFN + N     +++ D    
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 93  LARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
             ++  +G    +  Y+TLI   C+L K++ A  +   M         +++  +L  L  
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
               E+A  + E +++ ++  D+  YN ++   C    +     +   +  + +  D +T
Sbjct: 470 NGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT 529

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           Y+ ++ G C+ G + EA +L R+M +DG S    TY  ++ A L  G   ++ K +
Sbjct: 530 YNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLI 585



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 5/198 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           ++++ +  ++ R+  R     PR   +  L   + + K+ D  L +   M   G   +  
Sbjct: 54  DDAVDLFQEMTRSRPR-----PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLY 108

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +++   R +++  A+  M  + ++   PD   ++ L+   C +G ++    ++ +M
Sbjct: 109 TLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRM 168

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            E        T +ALV G C  G+V +A +L+ RMV+ G      TY  V+  + + G  
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228

Query: 260 AQAVKFVMVCGGRDIKLD 277
           A A++ +     R IKLD
Sbjct: 229 ALAMELLRKMEERKIKLD 246



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI   C   + D+  +++  M +       + F  ++    +  ++ EA  L + M 
Sbjct: 285 YTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMI 344

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  +SPD   Y  L+  +C +  L   + +L  M  +  G + RT++ L+ G C+A  ++
Sbjct: 345 QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLID 404

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +   L R+M   G      TY  ++     LG
Sbjct: 405 DGLELFRKMSLRGVVADTVTYNTLIQGFCELG 436



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 89/205 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LCK   +D A  + + M   GF    I +  ++       R ++   L+  M 
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + +++PD+ A++ L+  +  +G L     + K+M +  +  D  TY +L+ G C+  +++
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  +L  MV  G      T+  ++    +       ++       R +  DT  + +L 
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
                L +   A  + +EM  R ++
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVR 454



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 85/206 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   CK  ++D+A  ++D+M   G G +  TF+ +++   +   +++   L
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    V  D   YN L+  +C  G L     + ++M   ++  D  +Y  L+ G C 
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  E+A  +  ++      +    Y  ++  +        A         + +K D + 
Sbjct: 470 NGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT 529

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  +   L      +EA+ + ++M +
Sbjct: 530 YNIMIGGLCKKGSLSEADLLFRKMEE 555



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 2/226 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP +  +  L+N    E  +     L+++        T  T N + N       +SD   
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL 198

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            + R+ + GF P +  Y  ++  +CK  +   A+ ++  M E    L A+ +  I+  L 
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLC 258

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   ++ A+ L   M+      D+  Y  L+  +C+ G     + +L+ M + K+  D  
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            + AL+    + G++ EA  L + M+  G S    TY  ++    +
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 2/136 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A+  LI    K  K+ EA  +   M + G     +T+  ++    +  ++++A  +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-GVLKKMEEEKLGADARTYDALVLGAC 219
           +++M      P++  +N L+  YC K NL      + +KM    + AD  TY+ L+ G C
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYC-KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433

Query: 220 RAGRVEEAFVLLRRMV 235
             G++E A  L + MV
Sbjct: 434 ELGKLEVAKELFQEMV 449



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 122 ALRVVDIMAEGGFGLSAITFHPILS--VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           AL  +  M + G      TF  +L    L     + +A  L + MK +   P++  YN +
Sbjct: 603 ALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTV 662

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +        ++   GVL +M E     +A T    + G C+      A +LLR+M +D +
Sbjct: 663 IKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMENDNE 722

Query: 240 SV 241
            V
Sbjct: 723 DV 724


>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 632

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 88/199 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ LI    KL  I E+      M + GF  + I  + IL+ L + K   + W L E M 
Sbjct: 189 FEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEMG 248

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            I V  +   +N L    C  G++   +G L+KMEEE    D  TY+ L+    R GR+E
Sbjct: 249 RIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLE 308

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +AF L + M   G      +Y  +M  L RLG   +A +       R +  D  L+ +L 
Sbjct: 309 DAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLI 368

Query: 286 SKLIGLERFNEANFILKEM 304
                     EA  +L EM
Sbjct: 369 GAYCKDGMLQEARSLLHEM 387



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 1/165 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P   A + ++  L K+K   +   + + M   G   +A TF+ +  VL R   + + 
Sbjct: 216 GFVPNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKI 275

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            G +E M+E    PD+  YN L+ +Y  +G L     + K M    +  D  +Y +L+ G
Sbjct: 276 NGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRG 335

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            CR GRV EA  L  RM+D G       Y  ++GA  + G   +A
Sbjct: 336 LCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEA 380



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 1/215 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           ++GF P    Y+TLI    +  ++++A  +  IM   G     +++  ++  L R  R+ 
Sbjct: 284 EEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVR 343

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L   M +  + PD+  YN L+ AYC  G L     +L +M    +  D+ T   LV
Sbjct: 344 EAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILV 403

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G  R GR+  A  L+  +   G +V +  Y +++ +L R      A   +        +
Sbjct: 404 EGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQ 463

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            D++++  L          +EA  +  EM  R+ K
Sbjct: 464 PDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYK 498



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++ L   LC+   +++    ++ M E GF    +T++ ++    R  R+E+A+ L ++M
Sbjct: 258 TFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIM 317

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V PDL +Y  L+   C  G +     +  +M +  +  D   Y+ L+   C+ G +
Sbjct: 318 YRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGML 377

Query: 225 EEAFVLLRRMVDDG 238
           +EA  LL  M+  G
Sbjct: 378 QEARSLLHEMIGIG 391



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 91/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y +L+  LC+L ++ EA ++   M + G     + ++ ++    +   ++EA  L
Sbjct: 324 PDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSL 383

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M  I + PD      L+  Y  +G L +   ++ ++++  +      Y  L++  CR
Sbjct: 384 LHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCR 443

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R   A  LL R+++D        Y  ++ +  R    ++A+   +    R+ K  T+ 
Sbjct: 444 EDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDT 503

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL   +  + R  +   ++ EM
Sbjct: 504 YKSLIHCMCEINRSVDGEGLMVEM 527



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 50/119 (42%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y+ LI   C+   + EAL +   M    +  +  T+  ++  +    R  +
Sbjct: 460 DSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVD 519

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
             GLM  M E  V PD      L+  YC +GN      +L    ++    D+ ++++LV
Sbjct: 520 GEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAKDFQFFDSESFNSLV 578



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 53/134 (39%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  LC+  +   A  +++ + E  F   +  ++ ++    R   + EA  L   M 
Sbjct: 434 YKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMI 493

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                P    Y  L+   C         G++ +M E ++  D     ALV G C+ G  +
Sbjct: 494 NRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNAD 553

Query: 226 EAFVLLRRMVDDGQ 239
           +A  LL     D Q
Sbjct: 554 KAESLLVSFAKDFQ 567


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           LCR L    +G  P    Y+ L+   CK      A +VV  M E G   S IT+  ++  
Sbjct: 360 LCRDLK--SRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDT 417

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             R   ME+A  L   M+E+ ++PD+  Y+ L+  +C KG +   S + K M  +KL  +
Sbjct: 418 FARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPN 477

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              Y+ +VLG C+ G    A  L R M +       ++Y +++  L +
Sbjct: 478 KVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCK 525



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D  FP    Y+ ++ + CK  +  +A ++ D M E G   + +T++ ++  L R  +  E
Sbjct: 262 DGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANE 321

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  +M+ MK   ++P+L  YN L+  +C  G L     + + ++   L     TY+ LV 
Sbjct: 322 ANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVS 381

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           G C+ G    A  +++ M + G      TY  ++    R+    +A++ 
Sbjct: 382 GFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQL 430



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TLIG LC+  K +EA +V+D M   G   + IT++ ++       ++ +A  L   +
Sbjct: 305 TYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDL 364

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K   +SP L  YN L++ +C KG+ +    V+K+MEE  +     TY  L+    R   +
Sbjct: 365 KSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNM 424

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           E+A  L   M + G +    TY+ ++      G   +A + 
Sbjct: 425 EKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRL 465



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 134/343 (39%), Gaps = 44/343 (12%)

Query: 6   KLPTKFLIPQSVL--VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR 63
           K+ ++F    S+L  VT S T       E  S  Y+ ++NA    + L++     N+   
Sbjct: 69  KIQSQFFTSSSLLHYVTESET------SETKSRLYEVMINAYVQSQSLDSSISYFNEMVD 122

Query: 64  ------DCCFNTANTFNFITNTEN------------------SLSVLSDLCRTLARLDKG 99
                   CFN   TF   +++ N                  S  ++   C     ++K 
Sbjct: 123 KGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIKVDLDVYSFGIVIKGCCEAGEIEKS 182

Query: 100 F------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           F            P    Y TLI   CK  +I++A  +   M + G   +  T+  ++  
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHG 242

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L +    ++ + + E M+E  V P+L  YN ++  +C  G       +  +M E  +  +
Sbjct: 243 LFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCN 302

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY+ L+ G CR  +  EA  ++ +M  DG +    TY  ++     +G   +A+    
Sbjct: 303 IVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCR 362

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               R +      +  L S        + A  ++KEM +R +K
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIK 405



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 69/138 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y  LI    ++  +++A+++   M E G      T+  ++       +M EA  L
Sbjct: 406 PSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M   ++ P+   YN ++  YC +G+      + ++MEE++L  +  +Y  ++   C+
Sbjct: 466 FKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCK 525

Query: 221 AGRVEEAFVLLRRMVDDG 238
             + +EA  L+ +M+D G
Sbjct: 526 ERKSKEAEGLVEKMIDTG 543


>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
          Length = 574

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 94/182 (51%), Gaps = 3/182 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL-SVLTRGK--RMEEAWGLME 162
           ++ +I   CK  ++ +A  V   ++  G   S  T++ ++     RG+  +M     L++
Sbjct: 191 FNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLK 250

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M +  +SPD+  +N L+  YC + N+TA   V ++M ++ + A+  TY++LV G CR G
Sbjct: 251 EMIQAGISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREG 310

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           +VE++  L+  M + G + + ST   V+    + G   +A  +V     R +K +   + 
Sbjct: 311 KVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYN 370

Query: 283 SL 284
           +L
Sbjct: 371 TL 372



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 134/334 (40%), Gaps = 43/334 (12%)

Query: 28  AFPDEPTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           A+   P+ A Y+ L++     G    +  V  LL +  +        TFN + N      
Sbjct: 216 AWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLINGYCKEP 275

Query: 85  VLSDLCRTLARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
            ++   +    +  +G P     Y++L+  LC+  K+++++++V+ M E G      T +
Sbjct: 276 NITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEMEELGLACILSTMN 335

Query: 143 PILSVLTRGKRMEEAWGLMEVMKE-----------------------------------I 167
            +L+   +   M EA G ++ + +                                    
Sbjct: 336 SVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGK 395

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            +SP++  YN L+T +    +  + SG+L +M+E+ + AD  TY+ L+   C  G V +A
Sbjct: 396 GISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKA 455

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
             LL  MV+ G    +  Y  ++      G    A +  +    R  + +   +      
Sbjct: 456 VKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKY 515

Query: 288 LIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
              + + +EAN +L EM ++ L      R  YEI
Sbjct: 516 FCKMGKMDEANVVLNEMLEKGL---VPNRITYEI 546



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 74/158 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI      +       ++D M E G     +T++ ++  L     + +A  L
Sbjct: 399 PNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKL 458

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E+ + P   AYN ++  +C KG+      +  +ME+ K  A+  TY+  +   C+
Sbjct: 459 LDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCK 518

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
            G+++EA V+L  M++ G      TY  +   ++  GY
Sbjct: 519 MGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKGY 556



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 3/176 (1%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           SA + + +L+ L R  R++ A          RVSPDL  +N +++ +C  G L     V 
Sbjct: 152 SAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGDVA 211

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAF---VLLRRMVDDGQSVLYSTYAHVMGAL 253
           K +    +     TY+ L+ G C+ G+V + +    LL+ M+  G S    T+  ++   
Sbjct: 212 KNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLINGY 271

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +      A+K       + I  +   + SL S L    +  ++  +++EM +  L
Sbjct: 272 CKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEMEELGL 327



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LIG LC   ++ +A++++D M E G     + ++ I++        + A  +   M+
Sbjct: 439 YNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIRLRME 498

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + +   ++  YN  L  +C  G +   + VL +M E+ L  +  TY+ +      +G +E
Sbjct: 499 KRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEII-----NSGMIE 553

Query: 226 EAFV 229
           + +V
Sbjct: 554 KGYV 557


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 7/282 (2%)

Query: 32  EPTSAYYDDLVN----AAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
           +PT   ++ ++N    A  H+R LE   +++  +  +   N   +FN I  +   L ++ 
Sbjct: 140 KPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVL-SFNLIIKSMCKLGLVD 198

Query: 88  DLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           +       +   K  P    Y TL+  LCK+ +IDEA+ ++D M   G   S  TF+ ++
Sbjct: 199 NAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLI 258

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           + L +         L++ M      P+   YN L+   C KG L     +L +M   K  
Sbjct: 259 NGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCV 318

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  TY  ++ G  + GR  +   +L  M + G  V    Y+ ++  L + G   +A++ 
Sbjct: 319 PNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRL 378

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                 +  KL+T L+ +L   L    + +EA  IL EM  +
Sbjct: 379 FKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDK 420



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 96/213 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +++ +I  +CKL  +D A+ +   M        A T+  ++  L +  R++EA  
Sbjct: 178 LPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVS 237

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M+     P    +N L+   C KG+ T  + ++  M  +    +  TY+ L+ G C
Sbjct: 238 LLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC 297

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             G++++A  LL RMV         TY  ++  L++ G      + +++   R   ++  
Sbjct: 298 LKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEY 357

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
           ++  L S L    +  EA  + KE   +  K+ 
Sbjct: 358 VYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLN 390



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 124/294 (42%), Gaps = 8/294 (2%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           LV   F K G  P+E T   Y+ L++    +  L+    LL++     C     T+  I 
Sbjct: 273 LVDNMFLK-GCVPNEVT---YNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTII 328

Query: 78  NTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N         D  R L  ++ +G+   +  Y  L+  L K  K +EA+R+     + G  
Sbjct: 329 NGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCK 388

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           L+ + +  ++  L R ++ +EA  ++  M +   +P+   ++ L+  +   GN      V
Sbjct: 389 LNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEV 448

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            K M +     +   Y  L+ G C+ G+V EA ++  +M+  G       Y+ ++  L  
Sbjct: 449 WKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCD 508

Query: 256 LGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            G   +A+K    M+C   D + D   +  L + L      + A  +L  M  R
Sbjct: 509 AGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDR 562



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 92/212 (43%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +++  FP  + ++ LI  LCK        ++VD M   G   + +T++ ++  L    ++
Sbjct: 243 QIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKL 302

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M   +  P+   Y  ++     +G     + VL  MEE     +   Y  L
Sbjct: 303 DKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVL 362

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           V G  + G+ EEA  L +  +D G  +    Y+ ++  L R     +A+K +     +  
Sbjct: 363 VSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGC 422

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             +   F SL      +   ++A  + K+M K
Sbjct: 423 APNAFTFSSLMKGFFEVGNSHKAIEVWKDMTK 454



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 14/186 (7%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNF-------ITNTENSLSVL 86
            +  Y  LV+    +R  +    +L++     C   A TF+        + N+  ++ V 
Sbjct: 390 NTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVW 449

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
            D+ +           +  Y  LI  LCK  K+ EA+ V   M   G     + +  ++ 
Sbjct: 450 KDMTKI-----NCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQ 504

Query: 147 VLTRGKRMEEAWGLMEVMK--EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
            L     +EEA  L   M   E    PD+  YN L  A C + +++    +L  M +   
Sbjct: 505 GLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGC 564

Query: 205 GADART 210
             D  T
Sbjct: 565 DPDLVT 570


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 90/184 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK  K+DEA +++  M+E G   S +T++ ++    +   +++A+ +
Sbjct: 332 PNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M+     P+   YN L+   C K  +     +L KM E KL     TY++L+ G C+
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +E A+ LL  M ++G      TY+  +  L + G   +A         + +K +  +
Sbjct: 452 VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVI 511

Query: 281 FGSL 284
           + +L
Sbjct: 512 YTAL 515



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 112/243 (46%), Gaps = 20/243 (8%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR- 91
           P+   Y+ L++    E  ++    +L+    + C     T+N          ++  LC+ 
Sbjct: 367 PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYN---------ELICGLCKK 417

Query: 92  -----TLARLDKGFPRKSA-----YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
                 +A L+K   RK +     Y++LI   CK+  ++ A R++ +M E G      T+
Sbjct: 418 RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTY 477

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
              +  L +  R+EEA  L + +K   V  +   Y  L+  YC  G +     +L++M  
Sbjct: 478 SVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLN 537

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           +    ++ TY+ L+ G C+  +++EA  L+ +M+  G      TY  ++G +L+ G +  
Sbjct: 538 DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDH 597

Query: 262 AVK 264
           A+K
Sbjct: 598 ALK 600



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 94/242 (38%), Gaps = 29/242 (11%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y+ LI  LCK KK+ EA  +V  M   G   + +T+  ++  + +    + 
Sbjct: 538 DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDH 597

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  +   M  +   PD+  Y   L AY  +G L     V+ KM EE +  D  TY  L+ 
Sbjct: 598 ALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLID 657

Query: 217 GACRAGRVEEAFVLLRRMVDDG-------QSVLYSTYAHV-------------------- 249
           G  R G    AF  L+ MVD G        S+L    +H                     
Sbjct: 658 GYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNS 717

Query: 250 --MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +  + +   Y  A+K           +D  ++G+L +     ER  EA  ++  M +R
Sbjct: 718 VDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKER 777

Query: 308 DL 309
            +
Sbjct: 778 GM 779



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y  LI  L    +  EAL + + M E G   +  T+  ++  L +  +M+E
Sbjct: 293 DNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDE 352

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  ++  M E  + P +  YN L+  YC +G +     +L  ME    G + RTY+ L+ 
Sbjct: 353 ARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELIC 412

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G C+  +V +A  LL +M++   S    TY
Sbjct: 413 GLCKKRKVHKAMALLNKMLERKLSPSLITY 442



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 97  DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
            KG  R   +Y  LI  LC+  +I+EAL++   M E     +  T+  ++  L+   R  
Sbjct: 257 QKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKV 316

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L   MKE    P++  Y  L+   C +  +     +L +M E+ L     TY+AL+
Sbjct: 317 EALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G C+ G +++AF +L  M  +       TY  ++  L +
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCK 416



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 87/209 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   C+ K +D A  V  IM + G   + +++  ++  L    R+ EA  L
Sbjct: 227 PDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKL 286

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E    P +  Y  L+ A    G       +  +M+E+    +  TY  L+ G C+
Sbjct: 287 FADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCK 346

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +++EA  +L  M + G      TY  ++    + G    A + + +        +T  
Sbjct: 347 ENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRT 406

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   L    + ++A  +L +M +R L
Sbjct: 407 YNELICGLCKKRKVHKAMALLNKMLERKL 435



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 98/278 (35%), Gaps = 70/278 (25%)

Query: 57  LLNKRARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGR 112
           LL +   D C   + T+N +      E  +   S L   +  L  G  P    Y  LIG 
Sbjct: 531 LLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKM--LTMGVKPTVVTYTILIGE 588

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           + K    D AL+V + M   G+     T+   L        +EE   ++  M E  + PD
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648

Query: 173 LTAYNYLLTAY--------------CF-----KGNLTATSGVLKKMEEE--------KLG 205
           L  Y  L+  Y              C      K +L   S ++K +  E        ++G
Sbjct: 649 LVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG 708

Query: 206 ADART-------------------------------------YDALVLGACRAGRVEEAF 228
            D+ +                                     Y AL+ G C+  R+EEA 
Sbjct: 709 IDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQ 768

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            L+  M + G S     Y  ++    +LG YA+AV+ V
Sbjct: 769 GLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLV 806



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 108 TLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAI--TFHPILSVLTRGKRMEEAWGLMEVM 164
           ++I   C ++ +   L V   M A+G F        ++ IL  L++   ++E   +   +
Sbjct: 126 SMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLEL 185

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
              ++SP++  +N ++  YC  GN+        K+ +  L  D  TY +L+LG CR   V
Sbjct: 186 LNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGV 245

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           + A+ +   M   G      +Y +++  L   G   +A+K 
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKL 286



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 19/217 (8%)

Query: 39  DDLV---NAAGHERDLETVRYLLNKRARDCCFNTANTFNFI-----TNTENSLSVLSDLC 90
           DD++   N  G   DL T   L++  AR     T   F+F+     T  + SL ++S L 
Sbjct: 634 DDVIAKMNEEGILPDLVTYTVLIDGYAR--LGLTHRAFDFLKCMVDTGCKPSLYIVSILI 691

Query: 91  RTLA--------RLDKGFPRKSAYDTL-IGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           + L+        R + G    S  +++ I  + K  + + AL++ + M E G  +    +
Sbjct: 692 KNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIY 751

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             +++   + +R+EEA GL+  MKE  +SP    YN LL   C  G       ++  M E
Sbjct: 752 GALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVE 811

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             L     +Y  LV G    G  E+A  +   ++  G
Sbjct: 812 NGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCG 848


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 122/275 (44%), Gaps = 5/275 (1%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           ++ ++ LV  + T+ G  PD  T   Y+ L++    +R +   + +     R  C   A+
Sbjct: 318 MVSEARLVFETMTEKGVEPDIST---YNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAH 374

Query: 72  TFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           ++N + N       + +    LA +  K   P    Y TL+  LC+L +  EAL +   M
Sbjct: 375 SYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEM 434

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   + +T+  +L    +   ++EA  L++ MKE ++ P++  Y  L+      G L
Sbjct: 435 CSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKL 494

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  K+  +    D RTY  ++ G  + G  +EA+ L R+M DDG      +Y  +
Sbjct: 495 EVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVM 554

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +   L+    + A++ +    G+   ++   F  L
Sbjct: 555 IQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQML 589



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 94/206 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           + + LI  LC+L  +D ++ V+  M + G    AITF+ +++ L    +++EA  L   M
Sbjct: 130 SLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEM 189

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    P++ +Y  ++   C  GN +    V KKME+     +  TY  ++   C+   V
Sbjct: 190 VKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLV 249

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A   L  MV+ G      TY  ++     LG   +A +      GRD+  +T  F  L
Sbjct: 250 NDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTIL 309

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
              L      +EA  + + M ++ ++
Sbjct: 310 VDGLCKEGMVSEARLVFETMTEKGVE 335



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 2/237 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  ++++   +R +      L++           T+N I +   +L  L++  R
Sbjct: 230 KPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATR 289

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               +      P    +  L+  LCK   + EA  V + M E G      T++ ++    
Sbjct: 290 LFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYC 349

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
             + M EA  + E+M     +P   +YN L+  YC    +     +L +M  + L  D  
Sbjct: 350 LQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTV 409

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           TY  L+ G C+ GR +EA  L + M   G      TY  ++    + G+  +A+K +
Sbjct: 410 TYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLL 466



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 10/214 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I  LCK      A+ V   M + G   + +T+  I+  L + + + +A   
Sbjct: 196 PNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEF 255

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  + P++  YN ++  +C  G L   + + K+M    +  +  T+  LV G C+
Sbjct: 256 LSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCK 315

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA--LLRLGYYAQAVKFVMV---CGGRDIK 275
            G V EA ++   M + G     STY  +M    L RL   A+ V  +M+   C      
Sbjct: 316 EGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHS 375

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +  + G   S+     R +EA  +L EM  + L
Sbjct: 376 YNILINGYCKSR-----RMDEAKSLLAEMYHKAL 404



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 16/244 (6%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
           CF   N  +F+T+T            +L + + GF   ++       +C    +D+AL  
Sbjct: 37  CFLFFNHHHFLTSTSTKKP-------SLPKNNDGFVSNNS-----NNVC----VDDALAS 80

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
              M       S + F   L    + K+      L   M   RV+ ++ + N L+   C 
Sbjct: 81  FYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCR 140

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
             ++  +  VL KM +  +  DA T++AL+ G C  G+++EA  L   MV  G      +
Sbjct: 141 LNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVIS 200

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y  V+  L + G  + AV           K +   + ++   L      N+A   L EM 
Sbjct: 201 YTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMV 260

Query: 306 KRDL 309
           +R +
Sbjct: 261 ERGI 264



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 98/201 (48%), Gaps = 16/201 (7%)

Query: 76  ITNTENSLSVLSD-LCR------TLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEAL 123
           +T+   SL++L + LCR      +++ L K F     P    ++ LI  LC   KI EA+
Sbjct: 124 VTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAV 183

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            + + M + G   + I++  +++ L +      A  + + M++    P++  Y+ ++ + 
Sbjct: 184 ELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSL 243

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C    +      L +M E  +  +  TY+++V G C  G++ EA  L + MV  G+ V+ 
Sbjct: 244 CKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMV--GRDVMP 301

Query: 244 S--TYAHVMGALLRLGYYAQA 262
           +  T+  ++  L + G  ++A
Sbjct: 302 NTVTFTILVDGLCKEGMVSEA 322


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 11/244 (4%)

Query: 75  FITNTENSLSVLSDLCRTLA-----------RLDKGFPRKSAYDTLIGRLCKLKKIDEAL 123
           F  N  N   +L  LCR L            R +   P   +Y+T+I   C+ K++++AL
Sbjct: 138 FAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKAL 197

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           ++ + M   G   S +T+  ++    +  +M+EA GL++ MK   +  DL  Y  L+  +
Sbjct: 198 QLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGF 257

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C  G L     +  ++ E      A TY+ L+ G C+ GR++EA  +   M++ G     
Sbjct: 258 CDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNV 317

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++  L  +G   +A++ + +   +D + +   +  + +KL       +A  I++ 
Sbjct: 318 YTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVEL 377

Query: 304 MNKR 307
           M KR
Sbjct: 378 MKKR 381



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 94/203 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+  LC+  +  +A+ ++  M +       ++++ ++     GK +E+A  L   M+
Sbjct: 145 YNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQ 204

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               S  L  +  L+ A+C  G +    G+LK+M+ + L AD   Y +L+ G C  G ++
Sbjct: 205 GSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELD 264

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
               L   +++ G S    TY  ++    +LG   +A +       R ++ +   +  L 
Sbjct: 265 RGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLI 324

Query: 286 SKLIGLERFNEANFILKEMNKRD 308
             L G+ +  EA  +L  M ++D
Sbjct: 325 DGLCGVGKTKEALQLLNLMLQKD 347



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC + K  EAL+++++M +     + +T++ I++ L +   + +A  +
Sbjct: 315 PNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEI 374

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM--EEEKLGADARTYDALVLGA 218
           +E+MK+ R  PD   YN LL   C KG+L   S +L  M  +      D  +++AL+ G 
Sbjct: 375 VELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGL 434

Query: 219 CRAGRVEEAFVLLRRMVD 236
           C+  R+ +A  +   +V+
Sbjct: 435 CKGNRLHQALDIYDLLVE 452



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 85/202 (42%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +  LI   CK  K+DEA+ ++  M   G     I +  ++        ++    L + +
Sbjct: 214 TWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEV 273

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E   SP    YN L+  +C  G L   S + + M E  +  +  TY  L+ G C  G+ 
Sbjct: 274 LERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKT 333

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA  LL  M+   +     TY  ++  L +    A A++ V +   R  + D   + SL
Sbjct: 334 KEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSL 393

Query: 285 GSKLIGLERFNEANFILKEMNK 306
              L      +EA+ +L  M K
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLK 415



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    Y T+I   CK   ++ A  ++  M       S   ++ +LS L +   +++A
Sbjct: 489 KIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQA 548

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           W L E M+     PD+ ++N ++      G++ +   +L  M    L  D  TY  L+  
Sbjct: 549 WRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINR 608

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL----GYYAQAVKFVMVCGGRD 273
             + G ++EA     +M+D G    +   AH+  ++L+     G   +  +FV     +D
Sbjct: 609 FLKLGYLDEAISFFDKMIDSG----FEPDAHICDSVLKYCISQGETDKLTEFVKKLVDKD 664

Query: 274 IKLDTEL 280
           + LD EL
Sbjct: 665 VVLDKEL 671



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 2/138 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   CKL ++ EA  + + M E G   +  T+  ++  L    + +EA  L
Sbjct: 280 PCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQL 339

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-GVLKKMEEEKLGADARTYDALVLGAC 219
           + +M +    P++  YN ++   C K +L A +  +++ M++ +   D  TY++L+ G C
Sbjct: 340 LNLMLQKDEEPNVVTYNIIINKLC-KDSLVADALEIVELMKKRRTRPDNITYNSLLGGLC 398

Query: 220 RAGRVEEAFVLLRRMVDD 237
             G ++EA  LL  M+ D
Sbjct: 399 AKGDLDEASKLLYLMLKD 416



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 120/278 (43%), Gaps = 29/278 (10%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           ++ KL    L+  ++ +     K    PD  T   Y+ L+     + DL+    LL    
Sbjct: 358 IINKLCKDSLVADALEIVELMKKRRTRPDNIT---YNSLLGGLCAKGDLDEASKLLYLML 414

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRL--------- 113
           +D  +   +  +F     N+L  +  LC+   RL +       YD L+ +L         
Sbjct: 415 KDSSYTDPDVISF-----NAL--IHGLCKG-NRLHQAL---DIYDLLVEKLGAGDIVTTN 463

Query: 114 ------CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
                  K   +++A+ +   ++      ++ T+  ++    +   +  A GL+  M+  
Sbjct: 464 ILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLS 523

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            + P +  YN LL++ C KG L     + ++M+ +    D  +++ ++ G+ +AG ++ A
Sbjct: 524 ELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSA 583

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             LL  M   G S    TY+ ++   L+LGY  +A+ F
Sbjct: 584 ESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISF 621



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 60/124 (48%)

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           +++K   A  V+ +M + GF  +   ++ +L  L R     +A  L+  M++  + PD+ 
Sbjct: 119 QMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVV 178

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +YN ++  +C    L     +  +M+         T+  L+   C+AG+++EA  LL+ M
Sbjct: 179 SYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEM 238

Query: 235 VDDG 238
              G
Sbjct: 239 KHKG 242



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 19/217 (8%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTA-------NTFNFITNTENSLSVLSDLC 90
           YD LV   G   D+ T   LLN   +    N A       +    + N++   +++   C
Sbjct: 447 YDLLVEKLG-AGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFC 505

Query: 91  RT-LARLDKGF----------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           +T +  + KG           P    Y+ L+  LCK   +D+A R+ + M         I
Sbjct: 506 KTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVI 565

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           +F+ ++    +   ++ A  L+  M    +SPDL  Y+ L+  +   G L        KM
Sbjct: 566 SFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKM 625

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
            +     DA   D+++      G  ++    ++++VD
Sbjct: 626 IDSGFEPDAHICDSVLKYCISQGETDKLTEFVKKLVD 662


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 131/301 (43%), Gaps = 5/301 (1%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + ++  V +   K G  PD  T   Y+ L+N  G    L     L ++     C     T
Sbjct: 305 LDEACQVLKKMEKEGCPPDTIT---YNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVT 361

Query: 73  FNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           ++ +       + +   C     ++  G  P    Y ++I  L K  ++D+A R+   M 
Sbjct: 362 YSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMR 421

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G     IT++  L+ L RG R +EA  + E MKE  + PD+  Y+ LL        + 
Sbjct: 422 GKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVD 481

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
              G+LK++ E+    D+  +D  +      G V+EA  LL+     G     S+Y  ++
Sbjct: 482 DACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALI 541

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            AL + G  ++A   +     +  K D   + SL S L    + + A  +L+EM+KR LK
Sbjct: 542 DALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLK 601

Query: 311 M 311
           +
Sbjct: 602 L 602



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 5/285 (1%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           ++G  PD  T   Y  L+        L+    +L K  ++ C     T+N + N      
Sbjct: 282 RNGCKPDVVT---YSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAG 338

Query: 85  VLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           +L+D  R   R+  KG  P    Y TLI  L K  +++ A  + + M   G      T+ 
Sbjct: 339 LLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYC 398

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            I++VL +  ++++A  L   M+   +SPD+  YN  L +    G       + + M+E 
Sbjct: 399 SIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKES 458

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            L  D  TYDAL+LG  +   V++A  LL+ +++ G +     +   +  L   G   +A
Sbjct: 459 GLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEA 518

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            + +     + +      + +L   L    R +EA   L+++ ++
Sbjct: 519 HELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQ 563



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 98/215 (45%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P   +Y  LI  L +  K + AL VV  M   G   +  T++ ++  L +  + +EA
Sbjct: 39  KWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEA 98

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M++    PD+  YN L++     G L+    +  +M E     D  TY++L+ G
Sbjct: 99  LRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYG 158

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             + GR ++A  LL  M   G      TY+ ++  L + G   +A K       R  K D
Sbjct: 159 LGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPD 218

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
           +  F +L   L    R ++A  +L EM +R +K G
Sbjct: 219 SITFTALMDALGKAGRVDDALELLDEMKERGVKPG 253



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 116/277 (41%), Gaps = 2/277 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+N+ G     E    ++ +     C     T+N + +         +  R 
Sbjct: 42  PDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRL 101

Query: 93  LARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           LA + D G  P    Y+ LI  L K  ++ EA  +   M E G      T++ ++  L +
Sbjct: 102 LAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGK 161

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             R ++A  L+E M+     PD+  Y+ L+T     G       + ++M+      D+ T
Sbjct: 162 VGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSIT 221

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           + AL+    +AGRV++A  LL  M + G      TY  ++    ++G   +A   +    
Sbjct: 222 FTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMK 281

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
               K D   +  L + LI   + +EA  +LK+M K 
Sbjct: 282 RNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKE 318



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 77/153 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+  L K  ++D+AL ++D M E G     +T++ +++   +   + EA+ L
Sbjct: 217 PDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNL 276

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MK     PD+  Y+ L+T       L     VLKKME+E    D  TY+ L+ G  +
Sbjct: 277 LDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGK 336

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           AG + +A  L  RM   G +    TY+ ++ AL
Sbjct: 337 AGLLNDAGRLFDRMKSKGCNPDVVTYSTLITAL 369



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 13/290 (4%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT-------E 80
            FP  P    Y+ L+NA       E  + L  +           +++ + N+       E
Sbjct: 3   GFP-SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWE 61

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            +L V++++     +     P    Y+TL+  L K  + DEALR++  M + G      T
Sbjct: 62  AALEVVAEMQAKGCK-----PNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRT 116

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++S L +  R+ EA+ L   M+E    PD   YN L+      G       +L++ME
Sbjct: 117 YNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEME 176

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
                 D  TY +L+ G  + G   +AF L + M   G+     T+  +M AL + G   
Sbjct: 177 RHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVD 236

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            A++ +     R +K     + +L +    +    EA  +L EM +   K
Sbjct: 237 DALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCK 286



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 78/161 (48%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  + YD L+  L K K++D+A  ++  + E G    ++ F   L +LT    ++EA  
Sbjct: 461 LPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHE 520

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++      + P  ++YN L+ A    G ++     L+ ++E+    D  +Y +L+    
Sbjct: 521 LLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALG 580

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           + G+++ AF LL  M   G  +   +Y++++  L   G  A
Sbjct: 581 QTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQDWGARA 621



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 119/278 (42%), Gaps = 2/278 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ LV+  G     +    LL +   + C     T+N + +T      LS+   
Sbjct: 76  KPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFT 135

Query: 92  TLARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
             A + ++G  P    Y++LI  L K+ +  +A+ +++ M   G     +T+  +++ L 
Sbjct: 136 LFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLG 195

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +     +A+ L + MK     PD   +  L+ A    G +     +L +M+E  +     
Sbjct: 196 KDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVV 255

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+AL+ G  + G + EA+ LL  M  +G      TY+ ++  L++     +A + +   
Sbjct: 256 TYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKM 315

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                  DT  + +L + L      N+A  +   M  +
Sbjct: 316 EKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSK 353


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 188 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 247

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 248 FTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMR 307

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  +Y  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 308 MKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSI 367

Query: 261 QAVKFV 266
            A K +
Sbjct: 368 DAEKML 373



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK   I  AL V D + + G   S ++F+ +++   R   +
Sbjct: 132 LECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDL 191

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M    V PD+  Y+ L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 192 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTL 251

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +
Sbjct: 252 IDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 303



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    +L  +DE  R+   M   G      T+  +++ L +  +M++A  L
Sbjct: 173 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 232

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     V K+M  + L  D  TY+ L+ G C+
Sbjct: 233 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCK 292

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      +Y  ++    + G    A +        +I+LD   
Sbjct: 293 KGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVA 352

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L S L    R  +A  +L+EM
Sbjct: 353 YTALISGLCQEGRSIDAEKMLREM 376



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 20/230 (8%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           ++A+G + D+ T   L+N   ++   + AN           + N     +++   C+   
Sbjct: 201 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKN-G 259

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  ++D M   G     I++ 
Sbjct: 260 RVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYT 319

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 320 TLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSV 379

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            L  D  TY  ++   C+ G V     LL+ M  DG      TY  +M  
Sbjct: 380 GLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429



 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 60/149 (40%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK           + E G+  S   F+ ++    
Sbjct: 92  CYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFC 151

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + ++N L+  Y   G+L     +   M    +  D  
Sbjct: 152 KEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVY 211

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G C+  ++++A  L   M+D G
Sbjct: 212 TYSVLINGLCKESKMDDANELFDEMLDKG 240


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   ++M+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 86/190 (45%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + +     S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 20/216 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           + A+G + D+ T   L+N   ++   + AN           + N     +++   C+   
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKN-G 255

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+ 
Sbjct: 256 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  +  TY  ++   C+ G V     LL+ M  DG
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDNG 236


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 109/229 (47%), Gaps = 7/229 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           EN+ S LSD+       +KG FP    Y+TLI   C+   ++EA  ++D M+  G     
Sbjct: 375 ENTKSFLSDM------EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 428

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T++ I++ L +  +   A G+++ M +I +SPD   YN LL   C   N+     +  +
Sbjct: 429 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 488

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M  + +  D  ++ AL+    + G +++A    R M + G +     Y  ++G   R G 
Sbjct: 489 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 548

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++A+K       +   LD   + ++ + L   +  +EA+ +  EM +R
Sbjct: 549 MSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTER 597



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LIG  C+   + EAL+V D M E G  L  +T++ IL+ L + K + EA  L
Sbjct: 531 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADEL 590

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V PD   +  L+  Y   GN+     + + M +  L  D  TY+ L+ G C+
Sbjct: 591 FTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 650

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
              +E+   L   M+       + +Y  ++     +G  ++A + 
Sbjct: 651 GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 695



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 121/283 (42%), Gaps = 23/283 (8%)

Query: 15  QSVLVTRSF----TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN----KRARDCC 66
           Q +  T+SF     + G FPD  T   Y+ L+NA   +  LE    L++    K  + C 
Sbjct: 372 QKIENTKSFLSDMEEKGVFPDVVT---YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 428

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-----PRKSAYDTLIGRLCKLKKIDE 121
           F    T+N I N    L       R    LD+       P  + Y+ L+   C+   + +
Sbjct: 429 F----TYNAIIN---GLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 481

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A R+ D M   G     ++F  ++ +L++   +++A      MK   ++PD   Y  L+ 
Sbjct: 482 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 541

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            +C  G ++    V  +M E+    D  TY+ ++ G C+   + EA  L   M + G   
Sbjct: 542 GFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFP 601

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            + T+  ++    + G   +AV    +   R++K D   + +L
Sbjct: 602 DFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 644



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P   +Y  LI   C +  + EA R+ D M E GF  + IT + I+    R     +A  
Sbjct: 670 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 729

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +  M    + PD   YN L+  +  + N+     ++ KME   L  D  TY+ ++ G  
Sbjct: 730 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 789

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           R GR++EA +++ +M++ G +   STY  ++  
Sbjct: 790 RQGRMQEAELIMLKMIERGVNPDRSTYTSLING 822



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 89/205 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+T++  LCK K + EA  +   M E G      TF  +++   +   M +A  L E+M
Sbjct: 570 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMM 629

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  + PD+  YN L+  +C    +   + +   M   ++  +  +Y  L+ G C  G V
Sbjct: 630 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCV 689

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EAF L   MV+ G      T   ++    R G   +A +F+     + I  D   + +L
Sbjct: 690 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 749

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            +  I  E  + A  ++ +M    L
Sbjct: 750 INGFIKEENMDRAFALVNKMENSGL 774



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + +I  LCK +KI+     +  M E G     +T++ +++   R   +EEA+ LM+ M  
Sbjct: 362 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG 421

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + P +  YN ++   C  G      GVL +M +  +  D  TY+ L++  CR   + +
Sbjct: 422 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 481

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
           A  +   M   G      +++ ++G L + G   QA+K+      RD+K
Sbjct: 482 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYF-----RDMK 525



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 73/143 (51%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           +A ++L+G L K+  +D A  +   +   G  ++  T + +++ L + +++E     +  
Sbjct: 324 NACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSD 383

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+E  V PD+  YN L+ AYC +G L     ++  M  + L     TY+A++ G C+ G+
Sbjct: 384 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 443

Query: 224 VEEAFVLLRRMVDDGQSVLYSTY 246
              A  +L  M+  G S   +TY
Sbjct: 444 YLRAKGVLDEMLKIGMSPDTATY 466



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 111/272 (40%), Gaps = 2/272 (0%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KG 99
           ++NA    + +E  +  L+       F    T+N + N      +L +    +  +  KG
Sbjct: 364 MINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKG 423

Query: 100 F-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
             P    Y+ +I  LCK  K   A  V+D M + G      T++ +L    R   M +A 
Sbjct: 424 LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAE 483

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            + + M    V PDL +++ L+      G L       + M+   L  D   Y  L+ G 
Sbjct: 484 RIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGF 543

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           CR G + EA  +   M++ G  +   TY  ++  L +    ++A +       R +  D 
Sbjct: 544 CRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 603

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             F +L +        N+A  + + M +R+LK
Sbjct: 604 YTFTTLINGYXKDGNMNKAVTLFEMMIQRNLK 635



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 70/158 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +D L+    + +K+ E      ++   G  +S    + +L  L +   ++ AW + + +
Sbjct: 290 VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 349

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V  ++   N ++ A C    +  T   L  MEE+ +  D  TY+ L+   CR G +
Sbjct: 350 VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 409

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           EEAF L+  M   G      TY  ++  L + G Y +A
Sbjct: 410 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 447



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 7/151 (4%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    + TLI    K   +++A+ + ++M +       +T++ ++    +G  ME+   
Sbjct: 600 FPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNE 659

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M   R+ P+  +Y  L+  YC  G ++    +  +M E+   A   T + +V G C
Sbjct: 660 LWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC 719

Query: 220 RAGRVEEA-----FVLLRRMVDDGQSVLYST 245
           RAG   +A      +LL+ +V DG  + Y+T
Sbjct: 720 RAGNAVKADEFLSNMLLKGIVPDG--ITYNT 748



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 85/207 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   CK  ++++   + + M       + I++  +++       + EA+ L
Sbjct: 636 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 695

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E      +   N ++  YC  GN       L  M  + +  D  TY+ L+ G  +
Sbjct: 696 WDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK 755

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              ++ AF L+ +M + G      TY  ++    R G   +A   ++    R +  D   
Sbjct: 756 EENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRST 815

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL +  +      EA  +  EM +R
Sbjct: 816 YTSLINGHVTQNNLKEAFRVHDEMLQR 842


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 110/255 (43%), Gaps = 17/255 (6%)

Query: 10  KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNT 69
           + L  Q VL   S  K G  PD  T   Y+ L+       ++   R L N+  +      
Sbjct: 280 RILEAQGVLAMMS--KRGEKPDIVT---YNALMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 70  ANTFNFITN-------TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122
              +N + +        + ++ +  +LC          P  ++Y++LI  LC   +I   
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKELCNK-----NLVPTIASYNSLIDGLCNSGRISHV 389

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
            +++D M         +T++ ++  L +  R+ EA G++ +M +  V P++  YN ++  
Sbjct: 390 KKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG 449

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           YC + N+     +  +M +  L  D   Y+ L+ G C+   V+EA VL + M        
Sbjct: 450 YCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPD 509

Query: 243 YSTYAHVMGALLRLG 257
            ++Y  ++  L  LG
Sbjct: 510 IASYNSLIDGLCNLG 524



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 126/291 (43%), Gaps = 15/291 (5%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TE 80
            FP  PTS + D L+ A        T   L  +        +  TF  + N       T 
Sbjct: 49  VFPPPPTSVF-DKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTA 107

Query: 81  NSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
            + S+L+ +      L  G+ P    ++T+I   C    I +AL     +   G+     
Sbjct: 108 FAFSLLATI------LKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQF 161

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +++ L++  +++ A  L++ M++  V P+L  Y+ L+   C  G ++   G+  ++
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            E  +  DA TY++L+ G C  GR +E   LL +MV +       T+  ++ AL + G  
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +A   + +   R  K D   + +L       E  +EA  +   M KR L+
Sbjct: 282 LEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLE 332



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK  +I EAL V+ +M + G   + +T++ ++        +  A  +
Sbjct: 403 PDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDI 462

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + PD+  YN L+  YC    +     + K+M  + L  D  +Y++L+ G C 
Sbjct: 463 FNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCN 522

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            GR+     LL  M D GQS    TY  ++ A  +   + +A+  
Sbjct: 523 LGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISL 567



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 89/206 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y++LI   C + +  E  +++  M          TF+ ++  L +  R+ EA G++ +M
Sbjct: 232 TYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMM 291

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    PD+  YN L+  YC + N+     +  +M +  L  D   Y+ L+ G C+   V
Sbjct: 292 SKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMV 351

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA VL + + +       ++Y  ++  L   G  +   K +    G     D   +  L
Sbjct: 352 DEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNIL 411

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
              L    R  EA  +L  M K+ +K
Sbjct: 412 IDALCKEGRILEALGVLVMMMKKGVK 437



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI  LCK  +I EA  V+ +M++ G     +T++ ++      + + EA  L
Sbjct: 263 PDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAREL 322

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + PD+  YN L+  YC    +     + K++  + L     +Y++L+ G C 
Sbjct: 323 FNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCN 382

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+     LL  M    Q     TY  ++ AL + G   +A+  +++   + +K +   
Sbjct: 383 SGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVT 442

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + ++          N A  I   M K  L+
Sbjct: 443 YNAMMDGYCLRNNVNVAKDIFNRMVKSGLE 472



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 1/156 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  ++Y++LI  LC L +I     ++D M + G     IT++ +L    + +  ++A  
Sbjct: 507 IPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAIS 566

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   + E  + PD    + ++   C    L      LK +       + +TY  L+   C
Sbjct: 567 LFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALC 625

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G   EA +LL +M D+ +     T+  ++G LL+
Sbjct: 626 KDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQ 661



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 122/282 (43%), Gaps = 11/282 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVLSDLCR 91
           PT A Y+ L++   +   +  V+ LL++           T+N + +       +L  L  
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGV 427

Query: 92  TLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
            +  + KG  P    Y+ ++   C    ++ A  + + M + G     + ++ +++   +
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            + ++EA  L + M+   + PD+ +YN L+   C  G +     +L +M +     D  T
Sbjct: 488 TEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVIT 547

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV----MGALLRLGYYAQAVKFV 266
           Y+ L+   C+    ++A  L R++V+      Y+ +A V     G  L++     A+K +
Sbjct: 548 YNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMA--EDALKHL 605

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++ G      + + +  L + L     F EA  +L +M   D
Sbjct: 606 LMHGCSP---NVQTYTILINALCKDGSFGEAMLLLSKMEDND 644



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 1/209 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CK + +DEA+ +   M          +++ ++  L    R+     L
Sbjct: 473 PDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQEL 532

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +   SPD+  YN LL A+C          + +++ E  +  D  T  A+V   C+
Sbjct: 533 LDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCK 591

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +++ A   L+ ++  G S    TY  ++ AL + G + +A+  +      D   D   
Sbjct: 592 GEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAIT 651

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F  +   L+     ++A  + +EM  R L
Sbjct: 652 FEIIIGVLLQRNETDKAEKLREEMIARGL 680


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 85/162 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  ++   C+ KK+D+A +V++ M++ G     +T++ +L  L +   +++A  L
Sbjct: 287 PNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHEL 346

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +   +PD+ +Y+ +L   C    +     +  +M E KL  D  T++ L+ G C+
Sbjct: 347 FSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCK 406

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AG+++EA  LL +M   G +  Y  Y  +M  L + G + QA
Sbjct: 407 AGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQA 448



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 21/236 (8%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP+   Y+ L+NA   E  ++    L         F T     F  +     +++S LC+
Sbjct: 75  EPSIYTYNSLLNAFCKETKMKEAMEL---------FKTMAEKGFEPDVVTYSTIISGLCK 125

Query: 92  T-----------LARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           T              +++G    + AY+ LI  LCK + I+ A ++++ MA  G+    I
Sbjct: 126 TGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNI 185

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T++ ILS L R  ++ EA    + M     SPD+ AYN LL A   +G       + K +
Sbjct: 186 TYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDV 245

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             +    D  TY++++LG  R   ++EA  + ++MV  G +   +TY+ V+    R
Sbjct: 246 IAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCR 301



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 1/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  +  ++   CK  K+ +  ++ + M + G     I ++ ++    +  R++EA  L
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M  + + P +  YN LL A+C +  +     + K M E+    D  TY  ++ G C+
Sbjct: 66  YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCK 125

Query: 221 AGRVEEAF-VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            G+V EA  +L  +M++ G S     Y  ++  L +     +A K +     +    D  
Sbjct: 126 TGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNI 185

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
            + ++ S L  + + +EA      M  R
Sbjct: 186 TYNTILSGLCRMGKVSEAKQFFDSMPSR 213



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 1/159 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KG+ P    Y+T++  LC++ K+ EA +  D M   G+    + ++ +L  L +  + +E
Sbjct: 178 KGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDE 237

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L + +      PD   YN +L     K N+     + KKM       +  TY  ++ 
Sbjct: 238 AMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLS 297

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           G CRA +V++A  +L  M   G      TY  ++  L +
Sbjct: 298 GHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCK 336



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 88/208 (42%), Gaps = 2/208 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ ++     + +++    +  K     C     T++ + +       + D  + 
Sbjct: 252 PDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKV 311

Query: 93  LARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  + K    P    Y+ L+  LCK   +D+A  +   M + G     +++  +L+ L +
Sbjct: 312 LEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCK 371

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++ +A  L + M E ++ PD+  +N L+   C  G L     +L +M       D   
Sbjct: 372 TNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVA 431

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDG 238
           Y+ L+ G  + GR  +A  L + M + G
Sbjct: 432 YNTLMNGLRKQGRHIQADRLTQAMKEKG 459



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 51/107 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  ++  LCK  K+ +A  + D M E       +TF+ ++  L +  +++EA  L
Sbjct: 357 PDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDL 416

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           ++ M     +PD  AYN L+     +G       + + M+E+   +D
Sbjct: 417 LDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 56/128 (43%)

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           SP+   +  +L ++C +G L     + ++M +  +  D   Y+ L+ G  + GRV+EA  
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           L   MV  G      TY  ++ A  +     +A++       +  + D   + ++ S L 
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 290 GLERFNEA 297
              +  EA
Sbjct: 125 KTGKVTEA 132


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 9/229 (3%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           N+E +L +L+++      LD      S Y TLI  LCK++K+DEA  ++  M + G   +
Sbjct: 424 NSERALDLLNEMKNKGMELDV-----SLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPN 478

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            + +  I+    +  +  EA  L+  + +  + P++  Y  L+   C  G++        
Sbjct: 479 TVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFD 538

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           KM E  L  + + Y  L+ G C+ G + +A  L+  MVD G S+    Y  ++   ++ G
Sbjct: 539 KMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQG 598

Query: 258 --YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
               A A+K  M+  G  ++LD   +    S    +    EA  +L EM
Sbjct: 599 DLQGAFALKAKMIETG--LQLDLYCYTCFISGFCNMNMMQEARGVLSEM 645



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 123/298 (41%), Gaps = 45/298 (15%)

Query: 11  FLIPQSVLVTRS--FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFN 68
           FL  Q  LV     F +  A    P    Y+ L++  G   +LE V  L+++  +  C  
Sbjct: 208 FLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAA 267

Query: 69  TANTFNFITNT-------ENSLSVLSDLCR--------TLARLDKGF------------- 100
              T+N + N        E + S   ++ R        TL+     F             
Sbjct: 268 DVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLF 327

Query: 101 ---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
                    P +  Y +L+   CK  ++D+A+ ++D M   G   + +T+  ++  L + 
Sbjct: 328 AQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKE 387

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            ++  A  ++ +M+   V  +   Y  L+  +    N      +L +M+ + +  D   Y
Sbjct: 388 GKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLY 447

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             L+ G C+  +++EA  LL +M D G    +V+Y+T   +M A  + G  ++AV  +
Sbjct: 448 GTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTT---IMDAFFKAGKESEAVALL 502



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 106/245 (43%), Gaps = 35/245 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI    K  +++E   +V  M + G     +T++ +++  ++   +E+A+  
Sbjct: 232 PDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSY 291

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK + V  ++   +  + A+C +G +     +  +M    +  +  TY +LV G C+
Sbjct: 292 FGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCK 351

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYA----------------HVMGALLRLGYYAQAVK 264
           AGR+++A VLL  MV  G      TY                  V+  + R G  A  + 
Sbjct: 352 AGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELL 411

Query: 265 FVMVCGG-------------------RDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           +  +  G                   + ++LD  L+G+L   L  +++ +EA  +L +M+
Sbjct: 412 YTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMD 471

Query: 306 KRDLK 310
              L+
Sbjct: 472 DCGLR 476



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 89/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++    K  K  EA+ ++  + + G   + +T+  ++  L +   + EA   
Sbjct: 477 PNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISH 536

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M+E+ + P++  Y  L+  +C  G+L+    ++ +M ++ +  D   Y +L+ G  +
Sbjct: 537 FDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMK 596

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G ++ AF L  +M++ G  +    Y   +     +    +A   +    G  I  D   
Sbjct: 597 QGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTA 656

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L  K   L    EA+ +  EM
Sbjct: 657 YNCLIRKYQKLGNMEEASSLQNEM 680



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 69/163 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  ++  LCK  K+  A  V+ +M   G   + + +  ++      K  E A  L
Sbjct: 372 PNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDL 431

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK   +  D++ Y  L+   C    L     +L KM++  L  +   Y  ++    +
Sbjct: 432 LNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFK 491

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           AG+  EA  LL ++ D G      TY  ++  L + G   +A+
Sbjct: 492 AGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAI 534



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 74/173 (42%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           +  TF+ ++  L +   + EA  L   MK +  SPD+  YN L+  Y   G L     ++
Sbjct: 198 NVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLV 257

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            +M +    AD  TY+AL+    + G +E+A+     M   G      T +  + A  + 
Sbjct: 258 SEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKE 317

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           G   +A+K       R +  +   + SL        R ++A  +L EM  + L
Sbjct: 318 GLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL 370



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 101 PRKSA----YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           P +SA    +DTL+  L     +D+A+R +  + +     +  T + IL  L R ++   
Sbjct: 127 PHRSALPSVFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQ--- 183

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
             GL+  + E   +P++  +N ++   C +G L     +  +M+      D  TY++L+ 
Sbjct: 184 -GGLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLID 242

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           G  + G +EE  +L+  M   G +    TY  ++    + G+  +A  +
Sbjct: 243 GYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSY 291



 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 96  LDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG    K  Y +LI    K   +  A  +   M E G  L    +   +S       M
Sbjct: 576 VDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMM 635

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +EA G++  M    ++PD TAYN L+  Y   GN+   S +  +ME
Sbjct: 636 QEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEME 681



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 66/163 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ +I  LCK  ++ EA  +   M   G     +T++ ++    +   +EE   L
Sbjct: 197 PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELL 256

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++   + D+  YN L+  +   G +        +M+   + A+  T    V   C+
Sbjct: 257 VSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCK 316

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            G V EA  L  +M   G      TY  ++    + G    A+
Sbjct: 317 EGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAI 359


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 3/200 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y   I  LCK  ++++AL ++  M E G     ++ + +++ L + KR++EA  L
Sbjct: 216 PDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVL 275

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+    SP+  ++N L+   C  G         K+M +  +     TY+ LV G C+
Sbjct: 276 LSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 335

Query: 221 A---GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           A   GR++EA  L   M++ G+     TY+ ++  L + G    A + +     +    +
Sbjct: 336 ARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPN 395

Query: 278 TELFGSLGSKLIGLERFNEA 297
              + SL S L GLE+ +EA
Sbjct: 396 VYTYNSLISGLCGLEKVDEA 415



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 103/212 (48%), Gaps = 4/212 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P +  Y+ L+  LC   ++ +A  + + M + G+    +T++ +L    +   ++EA  
Sbjct: 7   WPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALK 66

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + +   +    PD+  YN L+  +C    L     +L++M  E L  D  TY++LV G C
Sbjct: 67  IFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLC 126

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR-LGYYAQAVKFVMVCGGRDIKLDT 278
           + GRV+EA +L+   VD G S    TY+ ++  L R L   ++A+K       +  + + 
Sbjct: 127 KNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEV 183

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             +  L   L+  +R NEA  +   + K  L+
Sbjct: 184 PTYNILIDGLLKEDRVNEAFELFSGLVKHGLE 215



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 21/249 (8%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
            K G  PD  T   Y+ L+N       L+  + +L +   +       T+N         
Sbjct: 72  VKRGFVPDVVT---YNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYN--------- 119

Query: 84  SVLSDLCRT-------LARLDKGF-PRKSAYDTLIGRLCK-LKKIDEALRVVDIMAEGGF 134
           S+++ LC+        +  +DKGF P    Y TLI  LC+ L+ + EAL++   + + G+
Sbjct: 120 SLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGY 179

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
                T++ ++  L +  R+ EA+ L   + +  + PD   Y   +   C  G +     
Sbjct: 180 EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALL 239

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +LK M+E+    D  +++A++ G C+  RV+EA VLL  M   G S    ++  ++    
Sbjct: 240 MLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQC 299

Query: 255 RLGYYAQAV 263
           R G + +A+
Sbjct: 300 RAGKWKKAM 308



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 102/235 (43%), Gaps = 24/235 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ LVN       ++  R L+  +             F  N     +++S LCR 
Sbjct: 113 PDVVTYNSLVNGLCKNGRVDEARMLIVDKG------------FSPNVITYSTLISGLCRE 160

Query: 93  L-----------ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L           + L +G+ P    Y+ LI  L K  +++EA  +   + + G    AIT
Sbjct: 161 LRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAIT 220

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +   +  L +  R+E+A  +++ M E    PD+ ++N ++   C +  +     +L  ME
Sbjct: 221 YTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGME 280

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +    +A +++ L+ G CRAG+ ++A    + M+  G      TY  ++  L +
Sbjct: 281 AKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 335



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 68/134 (50%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M + GF  + IT++ +LS L  G RM +A  L E M +   SPD+  YN LL  +C  G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L     +     +     D  TY+AL+ G C+A +++EA  +L+RMV +       TY  
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 249 VMGALLRLGYYAQA 262
           ++  L + G   +A
Sbjct: 121 LVNGLCKNGRVDEA 134



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 116/270 (42%), Gaps = 8/270 (2%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           S  K G  P+ PT   Y+ L++    E  +     L +   +      A T+    +   
Sbjct: 173 SVLKQGYEPEVPT---YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLC 229

Query: 82  SLSVLSDLCRTLARLD-KG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
               + D    L  +D KG  P   +++ +I  LCK K++DEA  ++  M   G   +AI
Sbjct: 230 KAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAI 289

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC---FKGNLTATSGVL 196
           +F+ ++    R  + ++A    + M +  V P +  YN L+   C    +G +     + 
Sbjct: 290 SFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLF 349

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
             M E+    D  TY AL+ G  +AG++++A  LL  M   G      TY  ++  L  L
Sbjct: 350 DAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGL 409

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
               +A++  +    +    DT  +G++ S
Sbjct: 410 EKVDEALELFVAMVEKGCVPDTITYGTIIS 439



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK---RMEEA 157
           P   +++TLI   C+  K  +A+     M + G   + +T++ ++  L + +   R++EA
Sbjct: 286 PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEA 345

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L + M E    PD+  Y+ L+      G L     +L  ME +    +  TY++L+ G
Sbjct: 346 ITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISG 405

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            C   +V+EA  L   MV+ G      TY  ++ A
Sbjct: 406 LCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 116/277 (41%), Gaps = 4/277 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           PT   ++ L+      R L   R LL+          A T+  + N    E ++  L +L
Sbjct: 559 PTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLEL 618

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              +     G P    Y  +I  LCK  K+ E+ ++++ M   G     ++++ I+    
Sbjct: 619 LSEMKAKAIG-PTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFC 677

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + + M +A+ L + M    + P    YN L+  +C  G+L     +L  ++  K+  +  
Sbjct: 678 KARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKY 737

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
            Y  ++   C  G V++A V  R+MV+ G  V    Y+ V+G L +     +A  F  + 
Sbjct: 738 AYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMM 797

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
               +  D +LF  L +        N    +L EM K
Sbjct: 798 LSDGVCPDQDLFEVLLNAFHQCGHLNSEFELLAEMIK 834



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 87/184 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C++  ++EAL++   M   GF LS I+   +L  L + ++++ A+ L
Sbjct: 384 PNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKL 443

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+   + PDL  Y+ L+   C +G +     + +KM   ++  ++  + A+++G C 
Sbjct: 444 FCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCE 503

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ +A +    ++    S+    Y  ++   ++ G   +AVK     G + I      
Sbjct: 504 KGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVT 563

Query: 281 FGSL 284
           F SL
Sbjct: 564 FNSL 567



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 73/155 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++T++ R CKL  +D A     +M + G    A +++ ++  L     M EA  L
Sbjct: 279 PSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDL 338

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+   + PD+  YN L   +   G +     +++KM  +    +  TY  L+ G C+
Sbjct: 339 KNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQ 398

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G VEEA  L + M+  G  +   +   ++G+L +
Sbjct: 399 IGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCK 433



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 74/150 (49%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I    K     EA+++   + E G   + +TF+ ++      +++ +A  L++ +K
Sbjct: 529 YNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIK 588

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P+   Y  L+  YC +GN+ +   +L +M+ + +G    TY  ++ G C+  +++
Sbjct: 589 LHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQ 648

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           E+  LL  M   G +    +Y  ++ A  +
Sbjct: 649 ESCQLLEDMDAVGLTPDQVSYNTIIQAFCK 678



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM----E 155
            P   +Y+ LI  LC    + EAL + + M   G     +T+    ++L +G R+     
Sbjct: 313 LPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTY----NILAKGFRLLGLIN 368

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            AW +++ M     +P+L  Y  L+  +C  GN+     + K+M          +   L+
Sbjct: 369 GAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLL 428

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV-KFVMVCGGRDI 274
              C++ +V+ AF L   M  +G      TY+ ++  L + G   QA+  +  +C  R I
Sbjct: 429 GSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRII 488



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 7/176 (3%)

Query: 76  ITNTENSLSVLSDLCRTLARLDKGFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMAEGGF 134
           I N E +L +  ++      +  GF       T L+G LCK +++D A ++   M   G 
Sbjct: 399 IGNVEEALKLYKEM------ISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGL 452

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
               IT+  ++  L +   +++A  L E M   R+ P+   +  +L   C KG ++    
Sbjct: 453 RPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARM 512

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               +    L  D   Y+ ++ G  + G   EA  L +++ + G S    T+  +M
Sbjct: 513 YFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLM 568



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 12/224 (5%)

Query: 73  FNFITNTENSLSVLSDLCRTLARLD-------KGFPRKSAYDTLI-GRLCKLKKIDEALR 124
            NFI + +   S+L +L  +    D        G P+     +++   LC+  +  +A+ 
Sbjct: 208 LNFIVSIQTYNSLLYNLRHSNIMWDVYNEIKVSGTPQSEYTSSIVVDGLCRQSRFQDAVL 267

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
                    F  S ++F+ I+S   +   ++ A     +M +  + PD  +YN L+   C
Sbjct: 268 FFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLC 327

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
             G++     +   ME   L  D  TY+ L  G    G +  A+ ++++M+  G +    
Sbjct: 328 IAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLV 387

Query: 245 TYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKL--DTELFGSL 284
           TY  ++    ++G   +A+K    M+  G  + +   T L GSL
Sbjct: 388 TYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSL 431



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 65/159 (40%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           ++  P    +  ++  LC+  KI +A    D +      L  I ++ ++    +     E
Sbjct: 485 NRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTRE 544

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L + + E  +SP +  +N L+  +C    L+    +L  ++   L  +A TY  L+ 
Sbjct: 545 AVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMN 604

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             C  G ++    LL  M        + TY  V+  L +
Sbjct: 605 VYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCK 643



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 11/156 (7%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  LCK  ++ +A+ + + M       +++    IL  L    ++ +A   
Sbjct: 454 PDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMY 513

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +    +S D+  YN ++  Y  +GN      + K++ E+ +     T+++L+ G C 
Sbjct: 514 FDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCI 573

Query: 221 AGRVEEAFVLLRRMVD-------DGQSVLYSTYAHV 249
             ++ +A    RR++D       +  +V Y+T  +V
Sbjct: 574 NRKLSQA----RRLLDTIKLHGLEPNAVTYTTLMNV 605


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 4/218 (1%)

Query: 95  RLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           R   GF   P   ++++L     K+K +DE    + +M +     + +T+   +    + 
Sbjct: 118 RASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCC-SPNVVTYSTWIDTFCKS 176

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             ++ A      MK   +SP++  +  L+  YC  G+L     + K+M   ++  +  TY
Sbjct: 177 GELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTY 236

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
            AL+ G C+ G ++ A  +  RMV+D        Y  ++    + G    A+KF+     
Sbjct: 237 TALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLN 296

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + ++LD   +G + S L G  +  EA  I+++M K DL
Sbjct: 297 QGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDL 334



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 111/260 (42%), Gaps = 4/260 (1%)

Query: 29  FPDEPTSAYYDDLVNAAGHERDLETVRYLLNK-RARD--CCFNTANTFNFITNTENSLSV 85
           F  EP    Y+ L++      D+ +   +L   RA     C     +FN + N  + + +
Sbjct: 85  FGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKM 144

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           L ++   +  + K   P    Y T I   CK  ++  AL+    M       + +TF  +
Sbjct: 145 LDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCL 204

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   +E A  L + M+ +R+S ++  Y  L+  +C KG +     +  +M E+++
Sbjct: 205 IDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRV 264

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             ++  Y  ++ G  + G  + A   L +M++ G  +  + Y  ++  L   G   +A +
Sbjct: 265 EPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATE 324

Query: 265 FVMVCGGRDIKLDTELFGSL 284
            V      D+  D  +F ++
Sbjct: 325 IVEDMEKSDLVPDMVIFTTM 344



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 35/191 (18%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           +++N++  L+ +     RLD      +AY  +I  LC   K+ EA  +V+ M +      
Sbjct: 283 DSDNAMKFLAKMLNQGMRLDI-----TAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPD 337

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA---------------------- 175
            + F  +++   +  RM+ A  +   + E    PD+ A                      
Sbjct: 338 MVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFC 397

Query: 176 --------YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
                   Y  L+ A C +G+      +  K+ E  L  D   Y + + G C+ G + +A
Sbjct: 398 IEKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDA 457

Query: 228 FVLLRRMVDDG 238
           F L  RMV +G
Sbjct: 458 FKLKTRMVQEG 468



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 2/149 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P    Y T+I    +    D A++ +  M   G  L    +  I+S L    +++E
Sbjct: 262 DRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKE 321

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  ++E M++  + PD+  +  ++ AY   G + A   +  K+ E     D      ++ 
Sbjct: 322 ATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMID 381

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           G  + G++ EA V     ++    V+Y+ 
Sbjct: 382 GIAKNGQLHEAIVYF--CIEKANDVMYTV 408



 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 49/104 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y + I  LCK   + +A ++   M + G  L  + +  ++  L     M EA  +
Sbjct: 436 PDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQV 495

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
            + M    +SPD   ++ L+ AY  +GN+ A S +L  M+   L
Sbjct: 496 FDEMLNSGISPDSAVFDLLIRAYEKEGNMAAASDLLLDMQRRGL 539



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 51/299 (17%), Positives = 109/299 (36%), Gaps = 38/299 (12%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           I  + LV  S   S  F  +P    ++ L N     + L+ V   +    + CC     T
Sbjct: 107 IRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLK-CCSPNVVT 165

Query: 73  FNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           ++   +T      L    ++   +  D   P    +  LI   CK   ++ A+ +   M 
Sbjct: 166 YSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMR 225

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP------------------- 171
                L+ +T+  ++    +   M+ A  +   M E RV P                   
Sbjct: 226 RVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSD 285

Query: 172 ----------------DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
                           D+TAY  +++  C  G L   + +++ ME+  L  D   +  ++
Sbjct: 286 NAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMM 345

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
               ++GR++ A  +  ++++ G        + ++  + + G   +A+ +  +    D+
Sbjct: 346 NAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDV 404



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           +L+ +  +   G+     +F+ ++S + +  +++ A  ++  M      PD+ +YN L+ 
Sbjct: 40  SLKFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLID 99

Query: 182 AYCFKGNLTATSGVLKKMEEEK---LGADARTYDALVLGACRAGRVEEAFVLLRRMVD-- 236
            +C  G++ + S VL+ +          D  ++++L  G  +   ++E FV +  M+   
Sbjct: 100 GHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCC 159

Query: 237 DGQSVLYSTY 246
               V YST+
Sbjct: 160 SPNVVTYSTW 169


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 80/157 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY ++I  +C   + + A  + + M + G   + +TF+ ++  L +  +MEEA  L
Sbjct: 271 PDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHL 330

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M +   SPD   YN L+  +C +G +     +   ME + +  DA +Y+ L+ G C+
Sbjct: 331 LKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCK 390

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +GR+ EA  L R M+         TY  ++  L R G
Sbjct: 391 SGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREG 427



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 4/211 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK   ID+   +   M   G     + +  I+  +    R E A GL
Sbjct: 236 PNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGL 295

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V P++  +N L+ A C  G +   + +LK M +     D  TY+ L+ G C 
Sbjct: 296 FNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCL 355

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
            GR+++A  L   M   G      +Y  ++    + G   +A K    M+C  ++I    
Sbjct: 356 EGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMC--KEIMPTV 413

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             + +L + L    +  +A  +  EM   DL
Sbjct: 414 ITYNTLLTGLFREGKVRDAWNLFGEMKVHDL 444



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 89/205 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ LI   CK  ++ EA ++   M       + IT++ +L+ L R  ++ +AW L   M
Sbjct: 380 SYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEM 439

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K   ++P+   YN LL   C   +L+    +   +E        + ++ L+ G C+A ++
Sbjct: 440 KVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKI 499

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           E A  L  R+  +G      TY  ++  L + G    A    +    +    +   F +L
Sbjct: 500 EIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTL 559

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
                  +   +   +L+EM ++D 
Sbjct: 560 MRGFCQNDEMQKVVELLQEMAEKDF 584



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 81/219 (36%), Gaps = 41/219 (18%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + LI   C L K+D  L V+  M   G   + +TF  ++  L  G R+ EA GL+  M  
Sbjct: 131 NILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVR 190

Query: 167 IRVSPDLTAYNYLLTAYCFKGN-----------LTATSG--------------------- 194
           +   P++  Y  LL   C  GN           L    G                     
Sbjct: 191 MGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCK 250

Query: 195 ---------VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
                    +  +M+   +  D   Y +++ G C  GR E A  L   MVD+G      T
Sbjct: 251 DGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVT 310

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +  ++ AL + G   +A   + +   R    DT  + +L
Sbjct: 311 FNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTL 349



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 102/262 (38%), Gaps = 19/262 (7%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  +++   H    E  + L N+   +       TFN + +       + +    
Sbjct: 271 PDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHL 330

Query: 93  LA-RLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L   + +G  P    Y+TLI   C   +ID+A  +   M   G    A++++ +++   +
Sbjct: 331 LKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCK 390

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             RM EA  L   M    + P +  YN LLT    +G +     +  +M+   L  ++ T
Sbjct: 391 SGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCT 450

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ L+ G C+   + EA  L   + +         +  ++  L               C 
Sbjct: 451 YNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGL---------------CK 495

Query: 271 GRDIKLDTELFGSLGSKLIGLE 292
            R I++  ELF  L  +  GLE
Sbjct: 496 ARKIEIARELFNRLSHE--GLE 515



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 68/153 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCK   + EA+ +   +    F  S   F+ ++  L + +++E A  L
Sbjct: 446 PESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAREL 505

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    + P++  Y  ++   C  G L     +   MEE+    +  T++ L+ G C+
Sbjct: 506 FNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQ 565

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
              +++   LL+ M +   S   ST + V+  L
Sbjct: 566 NDEMQKVVELLQEMAEKDFSPDASTISIVVDLL 598



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 2/167 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKI--DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           P +   +  +   CK   I   EA  V + + +        +F+ +L  + + KR  +  
Sbjct: 53  PDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVI 112

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L + M  I ++PD    N L+  YC    +     VL +M       +  T+ +LV G 
Sbjct: 113 SLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGL 172

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           C   R+ EA  LLR+MV  G      TY  ++  L   G    AVK 
Sbjct: 173 CLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKL 219



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 65/140 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI  LCK +KI+ A  + + ++  G   + IT+  ++  L +  ++E A  L
Sbjct: 481 PSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDL 540

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+E   +P+L  +N L+  +C    +     +L++M E+    DA T   +V    +
Sbjct: 541 FLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSK 600

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
             +  E   LL      GQ+
Sbjct: 601 DEKYREYLHLLPTFPAQGQT 620



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 72/178 (40%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TL+  L +  K+ +A  +   M        + T++ +L  L +   + EA  
Sbjct: 410 MPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAME 469

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   ++     P +  +N L+   C    +     +  ++  E L  +  TY  ++ G C
Sbjct: 470 LFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLC 529

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           ++G++E A  L   M + G +    T+  +M    +     + V+ +     +D   D
Sbjct: 530 KSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPD 587


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 10/259 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    ++ L++  G  R  E    +L K     C  +  T+N + +      +L +   
Sbjct: 288 EPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALE 347

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL- 148
               ++ +G  P    Y TLI  L ++ KID AL     M   G   +  T++ ++ +  
Sbjct: 348 LKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHG 407

Query: 149 TRGKRMEEAWGLMEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            RGK  E    +M V  ++R +   PD+  +N LL  +   G  +  SGV K+M++    
Sbjct: 408 VRGKFTE----MMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI 463

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  TY +L+    R G  ++A  + +RM++ G     STY  V+ AL R G + QA K 
Sbjct: 464 PERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKL 523

Query: 266 VMVCGGRDIKLDTELFGSL 284
                 RD K D   + SL
Sbjct: 524 FAEMEDRDCKPDELSYSSL 542



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 2/142 (1%)

Query: 106 YDTLIGRLCKLKKI-DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           Y+TLI   C+ + +  EA ++ D M   GF    +TF+ +L V  + +R EEA G+++ M
Sbjct: 259 YNTLIS-CCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKM 317

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +    +P +  YN L++AY   G L     + ++ME   +  D  TY  L+ G  R G++
Sbjct: 318 ENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKI 377

Query: 225 EEAFVLLRRMVDDGQSVLYSTY 246
           + A      MV +G S    TY
Sbjct: 378 DAALATYSEMVRNGCSPNLCTY 399



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 7/208 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG- 159
           P  SAY  L+    +  +  +A+ V   M +GG   + +T++ +L V ++   M   W  
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSK---MSVPWKE 239

Query: 160 ---LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
              L++ MKE  +  D   YN L++    +G     + +  +M+      D  T+++L+ 
Sbjct: 240 VVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLD 299

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
              +A R EEA  +L++M + G +    TY  ++ A ++ G   +A++       R +K 
Sbjct: 300 VYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKP 359

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           D   + +L S L  + + + A     EM
Sbjct: 360 DVVTYTTLISGLDRIGKIDAALATYSEM 387



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 109/247 (44%), Gaps = 22/247 (8%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  L++A  + + L+ ++ L    + D         N++  T   L ++++   
Sbjct: 533 KPDELSYSSLLHAYANAKKLDKMKAL----SEDIYAQRIEPHNWLVKT---LVLVNNKVN 585

Query: 92  TLARLDKGFP----RKSAYD--------TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           +L+  +K F     R+ + D        ++ G+   +KK++E   V+ +M E     SA 
Sbjct: 586 SLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEE---VLTLMKENSINHSAA 642

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T++ ++ + +R    E+   ++  +K   + PD  +YN ++ AY  KG +   S +  +M
Sbjct: 643 TYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEM 702

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           +   +  D  TY+  +         EEA  L+R +V  G      TY  ++    R G  
Sbjct: 703 KCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRM 762

Query: 260 AQAVKFV 266
            +A  F+
Sbjct: 763 VEAKSFL 769



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 3/137 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  Y +LI    +    D+A+ +   M E G      T++ +LS L RG R  +A  
Sbjct: 463 IPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEK 522

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M++    PD  +Y+ LL AY     L     + + +  +++         LVL   
Sbjct: 523 LFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNN 582

Query: 220 RA---GRVEEAFVLLRR 233
           +       E+AF  LRR
Sbjct: 583 KVNSLSETEKAFQELRR 599


>gi|357509511|ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500059|gb|AES81262.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 521

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 1/215 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    ++TLI   CK  K+ EA RV   M       + +T++ +++   +    E   G
Sbjct: 288 FPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYNTLINGFGQAGNSEMGIG 347

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L E M+  +V  D+  YN L+   C +G     + ++K++++  L  +A T+ AL+ G C
Sbjct: 348 LFEEMERNKVKADILTYNGLILGLCKEGKTKKAAYMVKELDKGNLVPNASTFSALIAGQC 407

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
                E AF++ R MV  G S   +T+  +  A  +   +  AV+ +     R +  D+ 
Sbjct: 408 VRNNSERAFLVYRSMVRSGFSPNENTFRMLASAFCKNEDFDGAVQVLRDMLERFMTPDSS 467

Query: 280 LFGSLGSKLIGLERFNEANFILKEMN-KRDLKMGF 313
           +   + S L    R   A  +  E+  KR L  GF
Sbjct: 468 ILSEVYSGLCRCGRKQFALMLCSEIEAKRLLPQGF 502



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 4/173 (2%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T N + +    L  L+     L ++ D G  P    +++LI   C    +  AL+V D+M
Sbjct: 222 TINMVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTFNSLISGYCDKGLLGLALKVRDLM 281

Query: 130 -AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
             + G   + +TF+ +++   +  ++ EA  +   MK   V+P++  YN L+  +   GN
Sbjct: 282 MGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYNTLINGFGQAGN 341

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
                G+ ++ME  K+ AD  TY+ L+LG C+ G+ ++A  +++ + D G  V
Sbjct: 342 SEMGIGLFEEMERNKVKADILTYNGLILGLCKEGKTKKAAYMVKEL-DKGNLV 393



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 14/191 (7%)

Query: 37  YYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT-FNFITNTENSL--SVLSD--LCR 91
           +++ +     +   L T  +LL+   ++  F TA + F+ I  T ++L  S+L    LC 
Sbjct: 88  FFNWVQTHNPNSHTLHTHSFLLHILTKNRNFKTAQSIFSKIITTNSNLFESLLHSYTLCN 147

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           +   +         +DTL      + K+  A      M E GF  +  + +  LS +   
Sbjct: 148 SSPLV---------FDTLFKTFAHMNKLRNATDTFVKMKEYGFFPTVESCNAFLSSMLYL 198

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
           KR E        M+  R+SP++   N +++AYC  G L   S VL+KM++  L  +  T+
Sbjct: 199 KRPELVVSFYRQMRRNRISPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTF 258

Query: 212 DALVLGACRAG 222
           ++L+ G C  G
Sbjct: 259 NSLISGYCDKG 269



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 1/173 (0%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R ++  P     + ++   CKL ++++A  V++ M + G   + +TF+ ++S       +
Sbjct: 212 RRNRISPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTFNSLISGYCDKGLL 271

Query: 155 EEAWGLMEVMK-EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
             A  + ++M  +  V P++  +N L+  +C +G L   + V  +M+   +  +  TY+ 
Sbjct: 272 GLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYNT 331

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           L+ G  +AG  E    L   M  +       TY  ++  L + G   +A   V
Sbjct: 332 LINGFGQAGNSEMGIGLFEEMERNKVKADILTYNGLILGLCKEGKTKKAAYMV 384


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 25/246 (10%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           +++S LC ++AR+D               P     +TLI  LCK  +I EA  V+D M  
Sbjct: 295 TLISGLC-SIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T++ ++    R  + E A  L+  M    ++P++  Y  L++  C    L  
Sbjct: 354 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 413

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
             GV  +M+      +  TY AL+LG C AG+V+    L   MV  G S  +  Y  +  
Sbjct: 414 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAA 473

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            L + G  A+A++ +    GR+         SL S+  G E +  A   L E  K ++ +
Sbjct: 474 ELCKSGRSARALEILRE--GRE---------SLRSEAWGDEVYRFAVDGLLEAGKMEMAL 522

Query: 312 GFKLRD 317
           GF +RD
Sbjct: 523 GF-VRD 527



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 120/284 (42%), Gaps = 22/284 (7%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   Y+ +++A+     LE    L+ K   D       T+N         +V+  LC++
Sbjct: 78  PSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN---------TVMDGLCKS 128

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            +R+++              P + +++T+I  LC+  KID+A +V   M        + +
Sbjct: 129 -SRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWS 187

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  ++  L +  ++ EA+ L + M +  ++P    YN ++   C    L     + K M 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            +       T++ L+   C+ G+++EAF LL+RM DDG      TY+ ++  L  +    
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            A   +     R  K       +L   L    R  EA  +L  M
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 76/162 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++ LI   CK  K+DEA R++  M + G     +T+  ++S L    R+++A  L
Sbjct: 253 PSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 312

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M + +  P +   N L+   C  G +     VL  M       D  TY+ LV G CR
Sbjct: 313 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 372

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AG+ E A  LL  MV  G +    TY  ++  L +     +A
Sbjct: 373 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 133/330 (40%), Gaps = 40/330 (12%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           ++ ++  + +   + G  PD  T   Y+ +++       +E    L N+  R  C     
Sbjct: 95  MLEEACDLIKKMIEDGHVPDVVT---YNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRR 151

Query: 72  TFNFITNTENSLSVLSDLCRTLARLD-KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIM 129
           + N I       S +   C+    ++ K  P  S +Y  LI  L K  K++EA ++   M
Sbjct: 152 SHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRM 211

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            + G   SA+T++ ++  +     ++EA  L + M+     P    +N L+ A+C +G L
Sbjct: 212 LDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKL 271

Query: 190 TATSGVLKKMEEEKLGADARTY-----------------------------------DAL 214
                +LK+M ++    D  TY                                   + L
Sbjct: 272 DEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTL 331

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+AGR++EA  +L  MV  GQS    TY  ++    R G   +A + +     R +
Sbjct: 332 IHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGL 391

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +   + +L S L    R  EA  +  +M
Sbjct: 392 APNVVTYTALVSGLCKANRLPEACGVFAQM 421



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 88/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  LI  L K  K+++A  +   +   G   S + +  ++  L      ++A  L
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      P    YN ++ A C +G L     ++KKM E+    D  TY+ ++ G C+
Sbjct: 68  FADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           + RVEEA +L   M   G +    ++  ++  L +     QA +       +DI  D+  
Sbjct: 128 SSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWS 187

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +G L   L    + NEA  + + M
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFQRM 211


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 13/191 (6%)

Query: 84  SVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           ++++ LC T  RLD+             +P +  Y TLI   CK K++++  ++   M++
Sbjct: 297 ALINGLC-TYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQ 355

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G   + IT+  ++       R + A  +   M   R  PD+  YN LL   C+ G +  
Sbjct: 356 KGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEK 415

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              + K M + ++  +  TY  ++ G C+ G+VE+AF L   +   G      TY  ++ 
Sbjct: 416 ALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMIS 475

Query: 252 ALLRLGYYAQA 262
              R G+  +A
Sbjct: 476 GFCRRGFIHEA 486



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 90/207 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y  LI  LC   ++DEA ++  +M   G+  + +T+  ++    + KR+E+   
Sbjct: 289 YPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTK 348

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +   M +  +  +   Y  L+  YC  G       V  +M   +   D RTY+ L+ G C
Sbjct: 349 IFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLC 408

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             G VE+A ++ + M      +   TY  ++  + ++G    A         + +K +  
Sbjct: 409 YNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVI 468

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            + ++ S        +EA+ + K+M +
Sbjct: 469 TYTTMISGFCRRGFIHEADALFKKMKE 495



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 90/193 (46%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           + +EAL +   M       S + F  +LSV+ + KR +    L E M+ + +SP L   N
Sbjct: 62  QFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCN 121

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++   C        S  L KM +     D  T+ +L+ G C   R+E+A  L  ++V  
Sbjct: 122 IVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGM 181

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G      TY  ++  L +  +   AV+     G   I+ +   + SL S L  + R+++A
Sbjct: 182 GFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDA 241

Query: 298 NFILKEMNKRDLK 310
            ++L++M KR ++
Sbjct: 242 AWLLRDMMKRGIQ 254



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR-GKRMEE 156
           GF P    Y TLI  LCK + ++ A+ + + M + G   + +T++ ++S L   G+  + 
Sbjct: 182 GFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDA 241

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           AW L ++MK   + P++  +  L+ A+   G +     + K M +  +  D  TY AL+ 
Sbjct: 242 AWLLRDMMKR-GIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALIN 300

Query: 217 GACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           G C  GR++EA  +   M  +G     V Y+T  H
Sbjct: 301 GLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIH 335



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 1/216 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D G  P    Y++L+  LC++ +  +A  ++  M + G   + ITF  ++    +  ++ 
Sbjct: 215 DNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIM 274

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L +VM ++ V PD+  Y  L+   C  G L     +   ME      +  TY  L+
Sbjct: 275 EAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLI 334

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G C++ RVE+   +   M   G      TY  ++     +G    A +     G R   
Sbjct: 335 HGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAP 394

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            D   +  L   L       +A  I K M KR++ +
Sbjct: 395 PDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDI 430



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 104/239 (43%), Gaps = 15/239 (6%)

Query: 81  NSLSVLSDLCRTLARLDK----GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N +   S  CR    L K    GF P    + +L+   C   +I++AL + D +   GF 
Sbjct: 125 NCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFR 184

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +T+  ++  L + + +  A  +   M +  + P++  YN L++  C  G  +  + +
Sbjct: 185 PNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWL 244

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L+ M +  +  +  T+ AL+    + G++ EA  L + M+         TY  ++  L  
Sbjct: 245 LRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCT 304

Query: 256 LGYYAQAVK--FVMVCGG---RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            G   +A +  ++M   G    ++   T + G   SK     R  +   I  EM+++ L
Sbjct: 305 YGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSK-----RVEDGTKIFYEMSQKGL 358



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/208 (18%), Positives = 82/208 (39%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
            +  P    +  L+  + K+K+ D  + + + M   G      T + +++ + R  +   
Sbjct: 76  SRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCR 135

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A   +  M ++   PDL  +  LL  +C    +     +  ++       +  TY  L+ 
Sbjct: 136 ASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIH 195

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
             C+   +  A  +  +M D+G      TY  ++  L  +G ++ A   +     R I+ 
Sbjct: 196 CLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQP 255

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           +   F +L    + + +  EA  + K M
Sbjct: 256 NVITFTALIDAFVKVGKIMEAKELYKVM 283



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/102 (20%), Positives = 52/102 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LC    +++AL +   M +    ++ +T+  I+  + +  ++E+A+ L
Sbjct: 395 PDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDL 454

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
              +    + P++  Y  +++ +C +G +     + KKM+E+
Sbjct: 455 FCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKED 496


>gi|115436834|ref|NP_001043148.1| Os01g0506100 [Oryza sativa Japonica Group]
 gi|56201661|dbj|BAD73125.1| leaf protein -like [Oryza sativa Japonica Group]
 gi|113532679|dbj|BAF05062.1| Os01g0506100 [Oryza sativa Japonica Group]
 gi|215717162|dbj|BAG95525.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 541

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 94/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  LC  ++ D+A+ ++D M E G   + +T +PI+  L +  R ++A  +
Sbjct: 216 PTVVTYGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKV 275

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E      V+P+++ +N L+  YC  G+L   S VLK M E  +    RTY+   +   +
Sbjct: 276 LEKFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAK 335

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              VE       +M+ +G S    TY  ++  L R       V+ +        + D   
Sbjct: 336 NSDVESGMNFYSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLAT 395

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
              L   L    +F EA    ++M KR +
Sbjct: 396 STMLIHLLCRRHQFEEACAEFEDMFKRGI 424



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 70/146 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P + AY+ L+    +  ++D+  ++   M   G   + +T+  ++  L   +R ++A  L
Sbjct: 181 PDERAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVTYGTLIEGLCVKRRPDQAIAL 240

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+E  +  +L   N ++ A    G       VL+K     +  +  T+++LV+G C+
Sbjct: 241 LDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGYCK 300

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
            G +  A  +L+ M + G S    TY
Sbjct: 301 HGDLAGASSVLKVMTERGISPTTRTY 326



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 90/231 (38%), Gaps = 9/231 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S +++L+   CK   +  A  V+ +M E G   +  T++       +   +E     
Sbjct: 286 PNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNF 345

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M     SPD   Y  L+        L     ++++M       D  T   L+   CR
Sbjct: 346 YSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCR 405

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVMVCGGRDIKL-- 276
             + EEA      M   G    Y TY  +M  L RLG  +  Q +  +M       KL  
Sbjct: 406 RHQFEEACAEFEDMFKRGIVPQYITYQKLMRELKRLGLVHLIQKLTNLMRSVPHSTKLPG 465

Query: 277 ---DTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINVK 324
              D E   S+  + + L++    + +LKE   +D K   KL++  E +V+
Sbjct: 466 SYRDKEGDDSMEKRKLILQKAQAVSDVLKEC--KDPKELGKLKEDEETDVE 514



 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 10/229 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDI--------MAEGGFGLSAITFHPILSVLTRGK 152
           P  +A+  L+ R  +L +   ALR            MA G    +A   +  +  L +  
Sbjct: 101 PPLAAFAPLVRRYARLGRAPAALRAFQFLRRHPDRYMAGGDIPAAASLLNMAVDALCKEG 160

Query: 153 RMEEAWGLMEVMK--EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
               A  L E  +  E    PD  AYN LL  +   G L     +  +M    +     T
Sbjct: 161 HPRAAVELFERWRREEPDSPPDERAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVT 220

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  L+ G C   R ++A  LL  M ++G      T   ++ AL + G +  A K +    
Sbjct: 221 YGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFP 280

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYY 319
              +  +   F SL            A+ +LK M +R +    +  +Y+
Sbjct: 281 LYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYF 329


>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g04760, chloroplastic-like [Glycine max]
          Length = 531

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 25/252 (9%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           ++ RS    G +  E       D+V A G E ++ T   L++   RD             
Sbjct: 233 ILLRSLXNQGKW--EAGFELMSDMV-AKGCEANVVTYSVLISSLCRD------------G 277

Query: 78  NTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
             E  + +L D+ +      KG  P    YD LI  LCK  ++D A+ V+D+M   G   
Sbjct: 278 KVEEGVGLLKDMKK------KGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVP 331

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             + ++ IL+ L + KR +EA  + E + E+  SP+ ++YN + +A    G+     G++
Sbjct: 332 DIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMI 391

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALL 254
            +M  + +  D   Y++L+   CR G V+EA  LL  M  +      S  +Y  V+  L 
Sbjct: 392 LEM-LDXVDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLC 450

Query: 255 RLGYYAQAVKFV 266
           R+G  + A + +
Sbjct: 451 RVGRVSDATEVL 462



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 3/168 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y+T++  LCK K+ DEAL + + + E G   +A +++ + S L        
Sbjct: 327 DGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVR 386

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE--KLGADARTYDAL 214
           A G++  M +  V PD+ AYN L++  C  G +     +L  ME E  +      +Y+ +
Sbjct: 387 ALGMILEMLD-XVDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIV 445

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +LG CR GRV +A  +L  MVD G     +TY  ++  +   G+   A
Sbjct: 446 LLGLCRVGRVSDATEVLAAMVDKGCLPNETTYTFLIEGIGFGGWLNDA 493



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 1/155 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I  +C+   +D A  V+  ++  G+ L  IT++ +L  L    + E  + L
Sbjct: 192 PDVFPYNSII-XMCREGYVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWEAGFEL 250

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M       ++  Y+ L+++ C  G +    G+LK M+++ L  D   YD L+   C+
Sbjct: 251 MSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCK 310

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            GRV+ A  +L  M+ DG       Y  ++  L +
Sbjct: 311 EGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCK 345



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 76/162 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+  L    K +    ++  M   G   + +T+  ++S L R  ++EE  GL++ MK
Sbjct: 231 YNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKDMK 290

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  + PD   Y+ L+   C +G +     VL  M  +    D   Y+ ++   C+  R +
Sbjct: 291 KKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRAD 350

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           EA  +  ++ + G S   S+Y  V  AL   G+  +A+  ++
Sbjct: 351 EALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMIL 392



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 2/171 (1%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KGF P    Y+ LIG LC    +  AL   + + +  F  + +T+  ++        ++
Sbjct: 117 NKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTILIEATLLQGGID 176

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L++ M EI + PD+  YN ++   C +G +     V+  +  +    D  TY+ L+
Sbjct: 177 EAIKLLDEMFEINLQPDVFPYNSIIX-MCREGYVDRAFEVISSISSKGYALDVITYNILL 235

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
                 G+ E  F L+  MV  G      TY+ ++ +L R G   + V  +
Sbjct: 236 RSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLL 286



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 13/213 (6%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  SA  T        + I  A +V+D M   GF    +T++ ++  L     +  A  
Sbjct: 94  IPHPSAKPT--------ESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALE 145

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               + +   +P +  Y  L+ A   +G +     +L +M E  L  D   Y++++   C
Sbjct: 146 FKNQLLKENFNPTVVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIX-MC 204

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLD 277
           R G V+ AF ++  +   G ++   TY  ++ +L   G +    + +  MV  G +  + 
Sbjct: 205 REGYVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVV 264

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           T  +  L S L    +  E   +LK+M K+ L+
Sbjct: 265 T--YSVLISSLCRDGKVEEGVGLLKDMKKKGLE 295


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 99/210 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I  LCK +   +AL V+  M  GG    AITF  ++S L +  R++EA  L
Sbjct: 362 PNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERL 421

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +       ++P+L++Y  L+  +C +G +   S +L +M E     D  T+ AL+ G   
Sbjct: 422 LRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVV 481

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG+V EA ++  +M         + Y  ++  L +      A   +     +++  D  +
Sbjct: 482 AGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYV 541

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L    I  E  +EA  I + M ++ + 
Sbjct: 542 YTTLIDGFIRNESLDEARKIFEFMEQKGIH 571



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI    + + +DEA ++ + M + G     + ++ ++    +   M EA   
Sbjct: 537 PDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVEC 596

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M+++   PD   Y  L+  Y  +GN++    +L  M + +   +   Y +L+ G C+
Sbjct: 597 MSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCK 656

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G  + A  L   M   G      TY  ++G+L +
Sbjct: 657 LGDTDAAECLFGSMESQGLFPNVITYTILIGSLFK 691



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  + Y+ LI  LCK K +  A  +++ M E         +  ++    R + ++EA  
Sbjct: 501 LPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARK 560

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + E M++  + PD+  YN ++  YC  G +      +  M +     D  TY  L+ G  
Sbjct: 561 IFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYA 620

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G +  A  LL  M+          Y+ ++    +LG
Sbjct: 621 KQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLG 658



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 124/299 (41%), Gaps = 9/299 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           Q+++V +     G  PD  T   +  L++    E  ++    LL +  R       +++ 
Sbjct: 382 QALVVLKQMFAGGCDPDAIT---FSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYT 438

Query: 75  FITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
            + +       + V S+L   +  +++G  P    +  LI  L    ++ EAL V + MA
Sbjct: 439 SLIHGFCVRGEVIVASNL--LVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMA 496

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
                  A  ++ ++S L + K +  A  L+E M E  V PD   Y  L+  +    +L 
Sbjct: 497 ARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLD 556

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               + + ME++ +  D   Y+A++ G C+ G + EA   +  M   G+     TY  ++
Sbjct: 557 EARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLI 616

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           G   + G  + A+  +     R  + +   + SL +    L   + A  +   M  + L
Sbjct: 617 GGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGL 675



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/154 (18%), Positives = 73/154 (47%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC    +++ L++++     G   +A+ ++ ++    R   +     L+  M+   + P 
Sbjct: 269 LCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPT 328

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  L++    KG+L   + +L +M E +L  + + Y++++   C+     +A V+L+
Sbjct: 329 VVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLK 388

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +M   G      T++ ++  L + G   +A + +
Sbjct: 389 QMFAGGCDPDAITFSTLISGLCQEGRVQEAERLL 422


>gi|125526118|gb|EAY74232.1| hypothetical protein OsI_02112 [Oryza sativa Indica Group]
          Length = 556

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 94/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  LC  ++ D+A+ ++D M E G   + +T +PI+  L +  R ++A  +
Sbjct: 216 PTVVTYGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKV 275

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E      V+P+++ +N L+  YC  G+L   S VLK M E  +    RTY+   +   +
Sbjct: 276 LEKFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAK 335

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              VE       +M+ +G S    TY  ++  L R       V+ +        + D   
Sbjct: 336 NSDVESGMNFYSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLAT 395

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
              L   L    +F EA    ++M KR +
Sbjct: 396 STMLIHLLCRRHQFEEACAEFEDMFKRGI 424



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 70/146 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P + AY+ L+    +  ++D+  ++   M   G   + +T+  ++  L   +R ++A  L
Sbjct: 181 PDERAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVTYGTLIEGLCVKRRPDQAIAL 240

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+E  +  +L   N ++ A    G       VL+K     +  +  T+++LV+G C+
Sbjct: 241 LDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGYCK 300

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
            G +  A  +L+ M + G S    TY
Sbjct: 301 HGDLAGASSVLKVMTERGISPTTRTY 326



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 10/229 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDI--------MAEGGFGLSAITFHPILSVLTRGK 152
           P  +A+  L+ R  +L +   ALR            MA G    +A   +  +  L +  
Sbjct: 101 PPLAAFAPLVRRYARLGRAPAALRAFQFLRRHPDRYMAGGDIPAAASLLNMAVDALCKEG 160

Query: 153 RMEEAWGLMEVMK--EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
               A  L E  +  E    PD  AYN LL  +   G L     +  +M    +     T
Sbjct: 161 HPRAAVELFERWRREEPDSPPDERAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVT 220

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  L+ G C   R ++A  LL  M ++G      T   ++ AL + G +  A K +    
Sbjct: 221 YGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFP 280

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYY 319
              +  +   F SL            A+ +LK M +R +    +  +Y+
Sbjct: 281 LYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYF 329



 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 13/233 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S +++L+   CK   +  A  V+ +M E G   +  T++       +   +E     
Sbjct: 286 PNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNF 345

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M     SPD   Y  L+        L     ++++M       D  T   L+   CR
Sbjct: 346 YSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCR 405

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             + EEA      M   G    Y TY  +M  L RLG      K   +   R +   T+L
Sbjct: 406 RHQFEEACAEFEDMFKRGIVPQYITYQKLMRELKRLGLVRLIQKLTNLM--RSVPHSTKL 463

Query: 281 FG---------SLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINVK 324
            G         S+  + + L++    + +LKE   +D K   KL++  E +V+
Sbjct: 464 PGSYRDKEGDDSMEKRKLILQKAQAVSDVLKEC--KDPKELGKLKEDEETDVE 514


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 5/211 (2%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG  P    ++ LI   C+      A  ++D M   G   + +T+  ++ VL +  RM+
Sbjct: 384 EKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMK 443

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L   +++  + PD+  +N L+  +C  GN+     +LK+M+  K+  D  TY+ L+
Sbjct: 444 EADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLM 503

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA--VKFVMVCGGRD 273
            G CR G+VEEA  LL  M   G    + +Y  ++    + G    A  V+  M+  G D
Sbjct: 504 QGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFD 563

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             + T  + +L   L   +    A  +LKEM
Sbjct: 564 PTILT--YNALIQGLCKNQEGEHAEELLKEM 592



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 4/164 (2%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKG  P    Y++ I  LCK  +++EA  ++  M EGG   +A+T++ ++        ++
Sbjct: 279 DKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLD 338

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A+   + M    +   L  YN  + A   +G +     ++K+M E+ +  DA T++ L+
Sbjct: 339 KAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILI 398

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAHVMGALLRL 256
            G CR G  + AF LL  MV  G     V Y++  +V+G   R+
Sbjct: 399 NGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRM 442



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 2/168 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +D L+   C+LKK +EAL    ++ E GF  +  T + +LS+  +  R + AW L   M 
Sbjct: 149 FDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMF 208

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            + +   L  +N ++   C +G L      +  ME   +  +  TY+ ++ G C  G+ +
Sbjct: 209 RMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQ 268

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGG 271
            A V+ + M D G      TY   +  L + G   +A   +  M+ GG
Sbjct: 269 RARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGG 316



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 14/213 (6%)

Query: 66  CFNTANTFNFITNTENS---LSVLSDLCRT------LARLDKGFPRKSAY--DTLIGRLC 114
           CF       F+ N E     LS+   L RT       A + +   R S Y  + +I  LC
Sbjct: 168 CFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLC 227

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           K  K+ +A   +  M   G   + +T++ I+       + + A  + + MK+  + PD  
Sbjct: 228 KEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCY 287

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            YN  ++  C +G L   SG++ KM E  L  +A TY+AL+ G C  G +++A+     M
Sbjct: 288 TYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEM 347

Query: 235 VDDG---QSVLYSTYAHVMGALLRLGYYAQAVK 264
           +  G     V Y+ + H +    R+G     +K
Sbjct: 348 ISKGIMASLVTYNLFIHALFMEGRMGDADNMIK 380



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 72/154 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    ++ LI   C    ID A +++  M         IT++ ++    R  ++EEA  
Sbjct: 458 LPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQ 517

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ MK   + PD  +YN L++ Y  +G++     V  +M          TY+AL+ G C
Sbjct: 518 LLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLC 577

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +    E A  LL+ MV  G +   STY  ++ A+
Sbjct: 578 KNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAM 611


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 91/209 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI  LC   ++ EAL +VD M E G   + IT + +++ L    ++ +A  L
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E    P+   Y  +L   C  G       +L+KMEE K+  DA  Y  ++ G C+
Sbjct: 200 IDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK 259

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G ++ AF L   M   G       Y  ++      G +    K +     R I  D   
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F +L    +   +  EA  + KEM +R +
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGI 348



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 2/236 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y  L++    E  L+   ++L+      C     TFN + N     +++ D    
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 93  LARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
             ++  +G    +  Y+TLI   C+L K++ A  +   M         +++  +L  L  
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
               E+A  + E +++ ++  D+  YN ++   C    +     +   +  + +  D +T
Sbjct: 470 NGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT 529

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           Y+ ++ G C+ G + EA +L R+M +DG S    TY  ++ A L  G   ++ K +
Sbjct: 530 YNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLI 585



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 5/198 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           ++++ +  ++ R+  R     PR   +  L   + + K+ D  L +   M   G   +  
Sbjct: 54  DDAVDLFQEMTRSRPR-----PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLY 108

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +++   R +++  A+  M  + ++   PD   ++ L+   C +G ++    ++ +M
Sbjct: 109 TLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRM 168

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            E        T +ALV G C  G+V +A +L+ RMV+ G      TY  V+  + + G  
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228

Query: 260 AQAVKFVMVCGGRDIKLD 277
           A A++ +     R IKLD
Sbjct: 229 ALAMELLRKMEERKIKLD 246



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI   C   + D+  +++  M +       + F  ++    +  ++ EA  L + M 
Sbjct: 285 YTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMI 344

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  +SPD   Y  L+  +C +  L   + +L  M  +  G + RT++ L+ G C+A  ++
Sbjct: 345 QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLID 404

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +   L R+M   G      TY  ++     LG
Sbjct: 405 DGLELFRKMSLRGVVADTVTYNTLIQGFCELG 436



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 89/205 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LCK   +D A  + + M   GF    I +  ++       R ++   L+  M 
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + +++PD+ A++ L+  +  +G L     + K+M +  +  D  TY +L+ G C+  +++
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  +L  MV  G      T+  ++    +       ++       R +  DT  + +L 
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
                L +   A  + +EM  R ++
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVR 454



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 85/206 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   CK  ++D+A  ++D+M   G G +  TF+ +++   +   +++   L
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    V  D   YN L+  +C  G L     + ++M   ++  D  +Y  L+ G C 
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  E+A  +  ++      +    Y  ++  +        A         + +K D + 
Sbjct: 470 NGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT 529

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  +   L      +EA+ + ++M +
Sbjct: 530 YNIMIGGLCKKGSLSEADLLFRKMEE 555



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 2/226 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP +  +  L+N    E  +     L+++        T  T N + N       +SD   
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL 198

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            + R+ + GF P +  Y  ++  +CK  +   A+ ++  M E    L A+ +  I+  L 
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLC 258

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   ++ A+ L   M+      D+  Y  L+  +C+ G     + +L+ M + K+  D  
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            + AL+    + G++ EA  L + M+  G S    TY  ++    +
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 2/136 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A+  LI    K  K+ EA  +   M + G     +T+  ++    +  ++++A  +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-GVLKKMEEEKLGADARTYDALVLGAC 219
           +++M      P++  +N L+  YC K NL      + +KM    + AD  TY+ L+ G C
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYC-KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433

Query: 220 RAGRVEEAFVLLRRMV 235
             G++E A  L + MV
Sbjct: 434 ELGKLEVAKELFQEMV 449


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 2/213 (0%)

Query: 97  DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAE-GGFGLSAITFHPILSVLTRGKRM 154
           +KG  R    Y  LI   CK  K+DEA +V+  M E          +  ++    R  ++
Sbjct: 255 EKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKI 314

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M  + +  +L   N L+  YC +G +    GV+ +M +  L  D+ +Y+ L
Sbjct: 315 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 374

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G CR G   EAF L  +M+ +G      TY  ++  L R+G +  A++   +   R +
Sbjct: 375 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGV 434

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             D   + +L   L  +E F  A+ + K++  R
Sbjct: 435 APDEVGYSTLLDGLFKMENFEGASTLWKDILAR 467



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 114/276 (41%), Gaps = 3/276 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           EP    Y  L+N      D+E  + +L   +         T+  +      +  +     
Sbjct: 224 EPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEK 283

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + R +       P + AY  LI   C+  KID+A+R++D M   G   +    + +++  
Sbjct: 284 VLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGY 343

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +   + EA G++  M +  + PD  +YN LL  YC +G+ +    +  KM +E +    
Sbjct: 344 CKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTV 403

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+ L+ G CR G  ++A  +   M+  G +     Y+ ++  L ++  +  A      
Sbjct: 404 LTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKD 463

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              R        F ++ S L  + +  EA  I  +M
Sbjct: 464 ILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM 499



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 124/285 (43%), Gaps = 22/285 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P S  Y+ L++    E        L +K  ++    T  T+N         ++L  LCR
Sbjct: 365 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYN---------TLLKGLCR 415

Query: 92  TLA----------RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAI 139
             A           + +G  P +  Y TL+  L K++  + A  +  DI+A G F  S I
Sbjct: 416 VGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARG-FTKSRI 474

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF+ ++S L +  +M EA  + + MK++  SPD   Y  L+  YC   N+     V   M
Sbjct: 475 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 534

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           E E +      Y++L+ G  ++ R+ E   LL  M   G +    TY  ++    + G  
Sbjct: 535 EREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 594

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +A           +  +  +  ++ S L  L R +EAN ++++M
Sbjct: 595 DKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 639



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 5/155 (3%)

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L + C+T        P    Y+  I  LCK  K+D+A R   +++  GF     T+  ++
Sbjct: 668 LDESCKTFL-----LPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLI 722

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
              +    ++EA+ L + M    + P++  YN L+   C   N+     +  K+ ++ L 
Sbjct: 723 HGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLF 782

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
            +  TY+ L+ G C+ G ++ AF L  +M+++G S
Sbjct: 783 PNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGIS 817



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+   C+     EA  + D M + G   + +T++ +L  L R    ++A  +
Sbjct: 366 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 425

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M +  V+PD   Y+ LL       N    S + K +          T++ ++ G C+
Sbjct: 426 WHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCK 485

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ EA  +  +M D G S    TY  ++    +     QA K         I    E+
Sbjct: 486 MGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEM 545

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + SL S L    R  E   +L EM  R L
Sbjct: 546 YNSLISGLFKSRRLVEVTDLLTEMGIRGL 574



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK   + +A +V   M       S   ++ ++S L + +R+ E   L
Sbjct: 506 PDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDL 565

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    ++P++  Y  L+  +C +G L        +M E  L A+      +V G  R
Sbjct: 566 LTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYR 625

Query: 221 AGRVEEAFVLLRRMVDDG 238
            GR++EA +L+++MVD G
Sbjct: 626 LGRIDEANLLMQKMVDHG 643



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 6/189 (3%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           T+N+L V  ++ +   R+    P   + ++L+  L K  +   A  V   M   G     
Sbjct: 138 TKNALYVFDNMGKC-GRI----PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDV 192

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
                +++   +  +++EA G ++ M+ + V P++  Y+ L+  Y   G++ A  GVLK 
Sbjct: 193 FMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKF 252

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLG 257
           M E+ +  +  TY  L+ G C+  +++EA  +LR M ++   V     Y  ++    R G
Sbjct: 253 MSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTG 312

Query: 258 YYAQAVKFV 266
               AV+ +
Sbjct: 313 KIDDAVRLL 321



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 6/189 (3%)

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL--RVVDI 128
           F F++  +N    +   C+ +  L +G  +    AY   +  LCK K     +   +V +
Sbjct: 55  FQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGV 114

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
             E  F  S   F  IL V       + A  + + M +    P L + N LL      G 
Sbjct: 115 YRE--FAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGE 172

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                 V ++M    +  D      +V   C+ G+V+EA   +++M + G      TY  
Sbjct: 173 THTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHS 232

Query: 249 VMGALLRLG 257
           ++   + LG
Sbjct: 233 LINGYVSLG 241


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  ++DEA  +   M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  +   M     SPD+  YN L+   C KG+L     +L +M 
Sbjct: 244 FTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E AF L  RM+ +   +    Y  ++  L + G   
Sbjct: 304 RKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAV 363

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D E +  + ++        +A+ +L+EM +
Sbjct: 364 DAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQR 409



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 4/217 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  RM+EA GL
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P+   +  L+  +C  G L     + ++M  +    D  TY+ L+ G C+
Sbjct: 229 FGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  LL  M   G      TY  ++    + G    A +         I+LD  +
Sbjct: 289 KGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVV 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRD 317
           + +L   L    R  +A  +L+EM    L++G K  D
Sbjct: 349 YTALIFGLCQEGRAVDAEKMLREM----LRVGLKPDD 381



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 1/168 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK  ++  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   +G+  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C+ GR++ A  + R+M++ G S    TY  ++  L + G   QA
Sbjct: 248 IDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQA 295



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 9/218 (4%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENS 82
           SG  PD  T   Y  L+N    E  ++    L  +   +       TF  + +       
Sbjct: 200 SGVQPDVYT---YSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 83  LSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           L +  D+ R +  L++GF P    Y+TLI  LCK   + +A  ++D M+  G     IT+
Sbjct: 257 LDLAMDIYRQM--LNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITY 314

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++    +   +E A+ L E M +  +  D   Y  L+   C +G       +L++M  
Sbjct: 315 TTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLR 374

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
             L  D  TY  ++   C+ G V++A  LLR M  +G+
Sbjct: 375 VGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGR 412



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 56/137 (40%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           I +A+    +  +  F +   T   +L  L + K  +  WG  + + E      L  +N 
Sbjct: 82  IRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEILECGYPASLYFFNI 141

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+  +C +G +     V   + +  L     +++ L+ G  + G ++E F L   M   G
Sbjct: 142 LMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASG 201

Query: 239 QSVLYSTYAHVMGALLR 255
                 TY+ ++  L +
Sbjct: 202 VQPDVYTYSVLINGLCK 218


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 86/162 (53%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + +L+  LC + K ++A  +   + + G  + A+ F+ ++  L    R+ EA  L
Sbjct: 404 PNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRL 463

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M  + V P++ +YN L+  +C  G +   + +L  M    L  +  TY  L+ G C+
Sbjct: 464 IDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCK 523

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           A RV++A+ L R M+  G + + +TY  ++  L + G +++A
Sbjct: 524 ARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEA 565



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 91/206 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+   C   +IDEA +++D+M   G   +  T+  +L    + +R+++A+ L
Sbjct: 474 PNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSL 533

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    V+P +  YN +L      G  +  + +   M   +   D  TY+ ++ G C+
Sbjct: 534 FREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCK 593

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V+EAF + RR+      +   T+  ++GALL+ G    A+          +  D   
Sbjct: 594 NNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVT 653

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  +   LI      E + +   M K
Sbjct: 654 YRLIAENLIEEGSLGEFDGLFSAMEK 679



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 126/293 (43%), Gaps = 13/293 (4%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V  S  +SG+   +     +D+L++ A     +     LL   +R  C +          
Sbjct: 18  VIASRARSGSLGLDEALKLFDELLHCA-RPASVRAFNQLLTVVSRAGCSSA--------- 67

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           +E  +S+ + + R  +   K  P    Y  LIG  C++ +++       ++ + G+ ++ 
Sbjct: 68  SERVVSLFTRMARECS--SKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNV 125

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEV-MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           I    +L  L   KR++EA  ++ + M E    PD+ AYN ++  +  +G +     +  
Sbjct: 126 IVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFL 185

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M ++ +  +  TY  ++ G C+A  V+ A  + ++M+D G      TY  ++   L  G
Sbjct: 186 EMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTG 245

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            + + V+ +       ++ D   +  L   L    R  EA      M ++ +K
Sbjct: 246 KWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIK 298



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 86/204 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK  +  EA    D M   G       +  +L        + E    
Sbjct: 264 PDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSF 323

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M    VSP+   +N +  AY  K  +     +  KM ++ L  D  ++ AL+   C+
Sbjct: 324 LDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCK 383

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV++A +   +M+++G +     ++ ++  L  +G + +A +       + I +D   
Sbjct: 384 LGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVF 443

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F +L   L    R  EA  ++  M
Sbjct: 444 FNTLMCNLCNEGRVMEAQRLIDLM 467



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 91/195 (46%), Gaps = 1/195 (0%)

Query: 96  LDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G    + + +TL+  LC   ++ EA R++D+M   G   + I+++ +++      R+
Sbjct: 433 LDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRI 492

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  L++VM    + P+   Y  LL  YC    +     + ++M  + +     TY+ +
Sbjct: 493 DEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTI 552

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G  + GR  EA  L   M++        TY  ++  L +  +  +A K       +D 
Sbjct: 553 LHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDP 612

Query: 275 KLDTELFGSLGSKLI 289
           +LD+  F  +   L+
Sbjct: 613 QLDSVTFNIMIGALL 627



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 20/257 (7%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF 100
           +V+ AG     E V  L  + AR+C    A       N      ++   CR + RL+ GF
Sbjct: 58  VVSRAGCSSASERVVSLFTRMARECSSKVA------PNACTYSILIGCFCR-MGRLEHGF 110

Query: 101 PR-----KSAY-------DTLIGRLCKLKKIDEALRVVDI-MAEGGFGLSAITFHPILSV 147
                  K+ +         L+  LC  K++DEA  ++ + M+E G     + ++ +++ 
Sbjct: 111 AAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVING 170

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             R  ++E+A+ L   M +  + P++  Y  ++   C    +    GV ++M +  +  D
Sbjct: 171 FFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPD 230

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY+ L+ G    G+ +E   +L  M   G      TYA ++  L + G   +A  F  
Sbjct: 231 NGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFD 290

Query: 268 VCGGRDIKLDTELFGSL 284
               + IK D  ++  L
Sbjct: 291 SMFRKGIKPDVAIYAIL 307



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 88/209 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+T+I    +  ++++A  +   M + G   + +T+  ++  L + + ++ A G+
Sbjct: 159 PDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGV 218

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  V PD   YN L+  Y   G       +L++M    L  D  TY  L+   C+
Sbjct: 219 FQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCK 278

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  EA +    M   G     + YA ++      G  ++   F+ +  G  +  +  +
Sbjct: 279 NGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRI 338

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F  +           EA  I  +M ++ L
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQGL 367



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++  LCK   +DEA ++   +      L ++TF+ ++  L +G R E+A  L   + 
Sbjct: 584 YNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATIS 643

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+  Y  +      +G+L    G+   ME+     ++   +ALV      G + 
Sbjct: 644 AYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDIS 703

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            A V L ++ +   S+  ST + ++    R  Y   A
Sbjct: 704 RAGVYLYKLDEKNFSLEASTTSMLISLYSRGEYQPHA 740


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  ++Y++LI  LC   +I    +++D M         +T++ ++  L +  R+ EA G+
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGV 427

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M +  V P++  YN ++  YC + N+     +  +M +  L  D   Y+ L+ G C+
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              V+EA VL + M         ++Y  ++  L  LG
Sbjct: 488 TEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLG 524



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 126/291 (43%), Gaps = 15/291 (5%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TE 80
            FP  PTS + D L+ A        T   L  +        +  TF  + N       T 
Sbjct: 49  VFPPPPTSVF-DKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTA 107

Query: 81  NSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
            + S+L+ +      L  G+ P    ++T+I   C    I +AL     +   G+     
Sbjct: 108 FAFSLLATI------LKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQF 161

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +++ L++  +++ A  L++ M++  V P+L  Y+ L+   C  G ++   G+  ++
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            E  +  DA TY++L+ G C  GR +E   LL +MV +       T+  ++ AL + G  
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +A   + +   R  K D   + +L       E  +EA  +   M KR L+
Sbjct: 282 LEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLE 332



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK  +I EAL V+ +M + G   + +T++ ++        +  A  +
Sbjct: 403 PDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDI 462

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + PD+  YN L+  YC    +     + K+M  + L  D  +Y++L+ G C 
Sbjct: 463 FNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCN 522

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            GR+     LL  M D GQS    TY  ++ A  +   + +A+  
Sbjct: 523 LGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISL 567



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 89/206 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y++LI   C + +  E  +++  M          TF+ ++  L +  R+ EA G++ +M
Sbjct: 232 TYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMM 291

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    PD+  YN L+  YC + N+     +  +M +  L  D   Y+ L+ G C+   V
Sbjct: 292 SKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMV 351

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA VL + + +       ++Y  ++  L   G  +   K +    G     D   +  L
Sbjct: 352 DEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNIL 411

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
              L    R  EA  +L  M K+ +K
Sbjct: 412 IDALCKEGRILEALGVLVMMMKKGVK 437



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI  LCK  +I EA  V+ +M++ G     +T++ ++      + + EA  L
Sbjct: 263 PDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAREL 322

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + PD+  YN L+  YC    +     + K++  + L     +Y++L+ G C 
Sbjct: 323 FNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCN 382

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+     LL  M    Q     TY  ++ AL + G   +A+  +++   + +K +   
Sbjct: 383 SGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVT 442

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + ++          N A  I   M K  L+
Sbjct: 443 YNAMMDGYCLRNNVNVAKDIFNRMVKSGLE 472



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 1/156 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  ++Y++LI  LC L +I     ++D M + G     IT++ +L    + +  ++A  
Sbjct: 507 IPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAIS 566

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   + E  + PD    + ++   C    L      LK +       + +TY  L+   C
Sbjct: 567 LFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALC 625

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G   EA +LL +M D+ +     T+  ++G LL+
Sbjct: 626 KDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQ 661



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 122/282 (43%), Gaps = 11/282 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVLSDLCR 91
           PT A Y+ L++   +   +  V+ LL++           T+N + +       +L  L  
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGV 427

Query: 92  TLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
            +  + KG  P    Y+ ++   C    ++ A  + + M + G     + ++ +++   +
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            + ++EA  L + M+   + PD+ +YN L+   C  G +     +L +M +     D  T
Sbjct: 488 TEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVIT 547

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV----MGALLRLGYYAQAVKFV 266
           Y+ L+   C+    ++A  L R++V+      Y+ +A V     G  L++     A+K +
Sbjct: 548 YNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMA--EDALKHL 605

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++ G      + + +  L + L     F EA  +L +M   D
Sbjct: 606 LMHGCSP---NVQTYTILINALCKDGSFGEAMLLLSKMEDND 644



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 1/204 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI   CK + +DEA+ +   M          +++ ++  L    R+     L++ M 
Sbjct: 478 YNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMC 537

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +   SPD+  YN LL A+C          + +++ E  +  D  T  A+V   C+  +++
Sbjct: 538 DSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLK 596

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A   L+ ++  G S    TY  ++ AL + G + +A+  +      D   D   F  + 
Sbjct: 597 MAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIII 656

Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
             L+     ++A  + +EM  R L
Sbjct: 657 GVLLQRNETDKAEKLREEMIARGL 680



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 1/138 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+   CK +  D+A+ +   + EG +     T H I+  L +G++++ A   
Sbjct: 543 PDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWP-DFYTNHAIVDNLCKGEKLKMAEDA 601

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ +     SP++  Y  L+ A C  G+      +L KME+     DA T++ ++    +
Sbjct: 602 LKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQ 661

Query: 221 AGRVEEAFVLLRRMVDDG 238
               ++A  L   M+  G
Sbjct: 662 RNETDKAEKLREEMIARG 679


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           + + LI  LC+L  +D A+ ++  M + G   +A TF+ +++ L    +++EA  L   M
Sbjct: 125 SLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEM 184

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P++ +YN ++   C  GN +    V KKME+     D  TY+ ++   C+   V
Sbjct: 185 VRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLV 244

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A   L  M+D G      TY  ++     LG   +A +      GRD+  DT     L
Sbjct: 245 NDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTIL 304

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
              L      +EA  + + M ++ ++
Sbjct: 305 VDGLCKEGMVSEARLVFETMTEKGVE 330



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 10/247 (4%)

Query: 69  TANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALR 124
           TA+TFN + N    E  +    +L   + R  +G  P   +Y+T+I  LCK      A+ 
Sbjct: 157 TASTFNALINGLCNEGKIKEAVELFNEMVR--RGHEPNVISYNTIINGLCKTGNTSMAVD 214

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           V   M + G     +T++ I+  L + + + +A   +  M +  + P++  YN ++  +C
Sbjct: 215 VFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFC 274

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
             G L   + + K+M    +  D  T   LV G C+ G V EA ++   M + G     S
Sbjct: 275 ILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNIS 334

Query: 245 TYAHVMGA--LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
           TY  +M    L RL   A+ V  +M+  G    + +  +  L +      R +EA  +L 
Sbjct: 335 TYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHS--YNILINGFCKSRRMDEAKSLLA 392

Query: 303 EMNKRDL 309
           EM  + L
Sbjct: 393 EMYHKAL 399



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 105/234 (44%), Gaps = 15/234 (6%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           ++ ++ LV  + T+ G    EP  + Y+ L++    +R +   + +     R  C    +
Sbjct: 313 MVSEARLVFETMTEKGV---EPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVH 369

Query: 72  TFNFITN-------TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALR 124
           ++N + N        + + S+L+++           P    Y TL+  LC+  +  EAL 
Sbjct: 370 SYNILINGFCKSRRMDEAKSLLAEMYHKALN-----PDTVTYSTLMQGLCQFGRPKEALN 424

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +   M   G   + +T+  +L    +   ++EA  L++ M+E ++ P++  +  L+    
Sbjct: 425 IFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMF 484

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             G L     +  K+  + +    RTY  ++ G  + G  +EA+ L R+M DDG
Sbjct: 485 IAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDG 538



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI   CK +++DEA  ++  M         +T+  ++  L +  R +EA  +
Sbjct: 366 PGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNI 425

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P+L  Y+ LL  +C  G+L     +LK M+E+KL  +   +  L+ G   
Sbjct: 426 FKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFI 485

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AG++E A  L  ++  DG      TY  ++  LL+ G   +A
Sbjct: 486 AGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEA 527



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P       L+  LCK   + EA  V + M E G   +  T++ ++      + M EA  +
Sbjct: 296 PDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKV 355

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E+M     +P + +YN L+  +C    +     +L +M  + L  D  TY  L+ G C+
Sbjct: 356 FEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQ 415

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            GR +EA  + + M   G      TY+ ++    + G+  +A+K +
Sbjct: 416 FGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLL 461



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 14/182 (7%)

Query: 76  ITNTENSLSVLSD-LCR------TLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEAL 123
           +T+   SL+VL + LCR       ++ L K F     P  S ++ LI  LC   KI EA+
Sbjct: 119 VTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAV 178

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            + + M   G   + I+++ I++ L +      A  + + M++    PD+  YN ++ + 
Sbjct: 179 ELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSL 238

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C    +      L +M +  +  +  TY+ +V G C  G++ EA  L + MV  G+ V+ 
Sbjct: 239 CKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMV--GRDVMP 296

Query: 244 ST 245
            T
Sbjct: 297 DT 298


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 171 LGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 230

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L    C KG+L     ++ +M 
Sbjct: 231 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMS 290

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 291 MKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSV 350

Query: 261 QAVKFV 266
            A K +
Sbjct: 351 DAEKML 356



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    +L  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 156 PSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 215

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L  G C+
Sbjct: 216 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCK 275

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A +        +I+LD  +
Sbjct: 276 KGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVV 335

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 336 YTALISGLCQEGRSVDAEKMLREMLSVGLK 365



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LDKG  P    + TLI   CK  ++D A+ +   M         IT++ +   L +   +
Sbjct: 220 LDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDL 279

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M    + PD   Y  L+   C +G++       K+M +E +  D   Y AL
Sbjct: 280 KQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTAL 339

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 340 ISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKG 382



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK   I  A  V D + + G   S ++F+ +++   R   +
Sbjct: 115 LECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDL 174

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M    V PD+  Y+ L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 175 DEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTL 234

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C+ GRV+ A  + ++M+    S    TY  +   L + G   QA
Sbjct: 235 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQA 282



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 85/212 (40%), Gaps = 20/212 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           ++A+G + D+ T   L+N   ++   + AN           + N     +++   C+   
Sbjct: 184 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKN-G 242

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TL   LCK   + +A  ++D M+  G     IT+ 
Sbjct: 243 RVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYT 302

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   ME A+   + M +  +  D   Y  L++  C +G       +L++M   
Sbjct: 303 TLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSV 362

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            L  +  TY  ++   C+ G V     LL+ M
Sbjct: 363 GLKPNXGTYTMIINEFCKKGDVWTGSKLLKEM 394



 Score = 44.3 bits (103), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 69  TANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVD 127
           T NT  +    +  L    DL   ++   KG  P K  Y TLI   CK   ++ A     
Sbjct: 265 TYNTLTYGLCKKGDLKQAHDLIDEMSM--KGLKPDKITYTTLIDGCCKEGDMETAFEHQK 322

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M +    L  + +  ++S L +  R  +A  ++  M  + + P+   Y  ++  +C KG
Sbjct: 323 RMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKG 382

Query: 188 NLTATSGVLKKME 200
           ++   S +LK+M+
Sbjct: 383 DVWTGSKLLKEMQ 395


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 134/310 (43%), Gaps = 17/310 (5%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R L     IPQ+  V ++ T  G  PD  T +   D ++ AG  R    VR   +  
Sbjct: 369 ALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAG--RIGAAVRIFKSME 426

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKI 119
           AR    N       I     +  +   L   LA++ K F  P    Y+ LI  LCK   +
Sbjct: 427 ARGLAPNEVVYSALIHGLCKARKMDCAL-EMLAQMKKAFCTPDTITYNILIDGLCKSGDV 485

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           + A    D M E G      T++ ++S L +    + A G+++ M   R       Y+ L
Sbjct: 486 EAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRF-----VYSSL 540

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C  G L     +  +ME   + A+++T   L+   C+A RV+EA  L   +  +G 
Sbjct: 541 VDGLCKSGKLEGGCMLFHEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM 599

Query: 240 SVLYSTYAHVMGALLRLGYY--AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
              Y+ Y  ++ AL++ G     QAV   M    R  K D   + +L + +IG  R + A
Sbjct: 600 PHPYA-YNSIISALIKSGKVNEGQAVYQEMT---RWWKPDRVTYNALLNGMIGANRMDRA 655

Query: 298 NFILKEMNKR 307
           ++   EM  R
Sbjct: 656 HYYYLEMTGR 665



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 10/235 (4%)

Query: 85  VLSDLCRT---LARLD------KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           VL  LC++   LA +D      +  P  +A +  LI  L K   + +A  +       G 
Sbjct: 196 VLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGC 255

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
            +   T+  I++ L + K+++EA  LME +     +P +  YN LL   C  G L     
Sbjct: 256 TIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAID 315

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +L+K+ +     D  TY +L+ G  +  R  EA+ L + M   G ++    Y  ++  LL
Sbjct: 316 LLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLL 375

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + G   QA              D     ++   L    R   A  I K M  R L
Sbjct: 376 QTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL 430



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 7/236 (2%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHE-RDLETVRYLLNK 60
           +LL  L     + +++ + R    +G  PD  T   Y  L++  G E R  E  +     
Sbjct: 299 ALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT---YTSLIDGLGKEKRSFEAYKLFKEM 355

Query: 61  RARDCCFNTANTFNFITN--TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKK 118
            +R    +T      I        +   S + +T+       P      T+I  L K  +
Sbjct: 356 ASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTS-HGCVPDVVTLSTMIDGLSKAGR 414

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           I  A+R+   M   G   + + +  ++  L + ++M+ A  ++  MK+   +PD   YN 
Sbjct: 415 IGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 474

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           L+   C  G++ A      +M E     D  TY+ L+ G C+AG  + A  +L  M
Sbjct: 475 LIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDM 530



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 5/234 (2%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           L+  L    ++ Q+  + +  T +G   D  T   Y  +VN     + ++    L+ K  
Sbjct: 230 LINGLVKAGMMIQAHSLAQETTTNGCTIDIHT---YTAIVNWLAKNKKIQEAVALMEKIT 286

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKID 120
            + C  T  T+N + N    +  L +    L ++ D G  P    Y +LI  L K K+  
Sbjct: 287 ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSF 346

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA ++   MA  G  L  + +  ++  L +  ++ +A  + + M      PD+   + ++
Sbjct: 347 EAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI 406

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
                 G + A   + K ME   L  +   Y AL+ G C+A +++ A  +L +M
Sbjct: 407 DGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM 460



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 11/217 (5%)

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRG 151
           A LD+   R+ + D ++     LK  D A  +   ++   FG   S  T + +L V  R 
Sbjct: 74  AALDR-LRREISTDAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFART 132

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADART 210
           KR  EA  L++        PD+  +N L+T YC          V+++MEE+  +    +T
Sbjct: 133 KRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKT 192

Query: 211 YDALVLGACRAGRVEEA---FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           ++ ++ G C++G+V  A   F  +RR       V  +T++ ++  L++ G   QA     
Sbjct: 193 HNLVLHGLCKSGKVLAAMDHFEAVRR----SMPVSAATFSILINGLVKAGMMIQAHSLAQ 248

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                   +D   + ++ + L   ++  EA  +++++
Sbjct: 249 ETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKI 285



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 3/151 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ L+  LCK+ +++EA+ ++  + + G     +T+  ++  L + KR  EA+ L
Sbjct: 292 PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 351

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    ++ D   Y  L+      G +   S V K M       D  T   ++ G  +
Sbjct: 352 FKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 411

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           AGR+  A  + + M   G     V+YS   H
Sbjct: 412 AGRIGAAVRIFKSMEARGLAPNEVVYSALIH 442



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 89/201 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  ++  L K KKI EA+ +++ +   G   +  T++ +L+ L +  R+EEA  L+  + 
Sbjct: 262 YTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIV 321

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +   +PD+  Y  L+     +        + K+M    L  D   Y AL+ G  + G++ 
Sbjct: 322 DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIP 381

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  + + M   G      T + ++  L + G    AV+       R +  +  ++ +L 
Sbjct: 382 QASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 441

Query: 286 SKLIGLERFNEANFILKEMNK 306
             L    + + A  +L +M K
Sbjct: 442 HGLCKARKMDCALEMLAQMKK 462



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 6/214 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    ++ LI   C  ++ +EA  V+  M E  G   S  T + +L  L +  ++  A  
Sbjct: 152 PDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAA-- 209

Query: 160 LMEVMKEIRVSPDLTA--YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            M+  + +R S  ++A  ++ L+      G +     + ++        D  TY A+V  
Sbjct: 210 -MDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNW 268

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             +  +++EA  L+ ++  +G +   +TY  ++  L ++G   +A+  +          D
Sbjct: 269 LAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 328

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
              + SL   L   +R  EA  + KEM  R L +
Sbjct: 329 VVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLAL 362


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 176 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 235

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 236 FTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 295

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 296 MKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSV 355

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +      D+K DT  +  + ++        + + +LKEM +
Sbjct: 356 DAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 401



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           I N     +++   C+   R+
Sbjct: 191 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKN-GRV 249

Query: 97  DKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   + +A  ++D M+  G      T+  +
Sbjct: 250 DLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 309

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +  +  D  AY  L++  C +G       +L++M    L
Sbjct: 310 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDL 369

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             D  TY  ++   C+ G V +   LL+ M  DG +    TY  +M  
Sbjct: 370 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417



 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 49/116 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L  L + K  +  WG  E + E      L  +N L+  +C  G++     V   +
Sbjct: 95  TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 154

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  L     +Y+ L+ G  R G ++E F L   M+  G      TY+ ++  L +
Sbjct: 155 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 210



 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 60/149 (40%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 80  CYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 139

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 140 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 199

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G C+  ++++A  L   M+  G
Sbjct: 200 TYSVLINGLCKESKMDDANELFDEMLVKG 228


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 104/214 (48%), Gaps = 12/214 (5%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT-------ENSLS 84
           +P    Y+ ++    +   +E   YL      +     A T+N + +        ++++S
Sbjct: 445 KPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAIS 504

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           + +D+      LD       +Y+ LI  LC+   +D ++ ++  MAE G   + ++++ +
Sbjct: 505 LANDMVLHGCSLDI-----VSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLL 559

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +S L + +R+ +A  L + M    ++PD+  YN L+   C  G + A   +L+K+  E +
Sbjct: 560 ISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDV 619

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            AD  TY+ L+   C+A  + +A +LL R V  G
Sbjct: 620 HADIITYNILISWHCKARLLHDASMLLNRAVTSG 653



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 114/246 (46%), Gaps = 2/246 (0%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C   A+T++ + +    L  L    + L  + DKGF P    Y  L+   C+    D   
Sbjct: 339 CPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIR 398

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            ++++M++ G  ++   ++ ++  + + +RM++A   M+ MK     PD+  YN ++   
Sbjct: 399 AMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHL 458

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C    +     + + +  E + A+A TY+ L+    R G  ++A  L   MV  G S+  
Sbjct: 459 CNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDI 518

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            +Y  ++ AL R G   +++  +     + IK +   +  L S+L    R  +A  + KE
Sbjct: 519 VSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKE 578

Query: 304 MNKRDL 309
           M  ++L
Sbjct: 579 MLNQEL 584



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 4/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCKL ++  A++++  M + GF  S +T+  +L    R    +    +
Sbjct: 341 PDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAM 400

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +EVM +  +S +L  YN ++ A C    +      +++M+ +    D  TY+ ++   C 
Sbjct: 401 LEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCN 460

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
             ++EEA  L   ++ +G      TY  ++ ALLR G +  A+     MV  G    LD 
Sbjct: 461 NNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHG--CSLDI 518

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             +  L   L      + +  +L EM ++ +K
Sbjct: 519 VSYNGLIKALCRDGNVDRSIMLLSEMAEKGIK 550



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 95/202 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LC   +++EA  + + +   G   +AIT++ ++  L R    ++A  L
Sbjct: 446 PDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISL 505

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M     S D+ +YN L+ A C  GN+  +  +L +M E+ +  +  +Y+ L+   C+
Sbjct: 506 ANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCK 565

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             RV +A  L + M++   +    TY  ++  L ++G+   A+  +      D+  D   
Sbjct: 566 TRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIIT 625

Query: 281 FGSLGSKLIGLERFNEANFILK 302
           +  L S        ++A+ +L 
Sbjct: 626 YNILISWHCKARLLHDASMLLN 647



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 125/292 (42%), Gaps = 9/292 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           +++ + RS  + G  PD   +  Y  +++A   +  +     LL++     C    NTFN
Sbjct: 190 EALTMLRSMARHGCVPD---TVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFN 246

Query: 75  FITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            I +   +L  L +  R + R+      P    Y  L+  LC   +++EA  ++  + E 
Sbjct: 247 DIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPE- 305

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
              L+ + F+ ++       +++EA  L E M      PD   Y+ L+   C  G L + 
Sbjct: 306 ---LNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSA 362

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L++ME++       TY  L+   CR G  +    +L  M D G S+    Y  ++ A
Sbjct: 363 MKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICA 422

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           + +      A++F+     +  K D   + ++   L    +  EA ++ + +
Sbjct: 423 VCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENL 474



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 4/207 (1%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + ++ ++  LC L ++ EA R+VD M   G   +AIT+  +L  L    ++EEA  ++  
Sbjct: 243 NTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGR 302

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           + E+ V      +N ++      G L   + + + M  +    DA TY  L+ G C+ GR
Sbjct: 303 VPELNV----VLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGR 358

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           +  A  LLR M D G +    TY  ++ +  R G +      + V   + + ++ E +  
Sbjct: 359 LGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNG 418

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           +   +    R ++A   ++EM  +  K
Sbjct: 419 MICAVCKDRRMDDAMRFMQEMKSQGYK 445



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 5/223 (2%)

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           VLS L R +   D+  P    +      LC+L + DEAL ++  MA  G     + +  +
Sbjct: 155 VLS-LYRRMVHRDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTV 213

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L     + EA  L++ M  +  S D+  +N ++   C  G L   + ++ +M     
Sbjct: 214 IHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGC 273

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +A TY  L+ G C A +VEEA  +L R V +   VL++T   V+G  L  G   +A +
Sbjct: 274 VPNAITYGFLLKGLCLASQVEEARTMLGR-VPELNVVLFNT---VIGRCLLDGKLKEAAE 329

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                G +    D   +  L   L  L R   A  +L+EM  +
Sbjct: 330 LYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDK 372


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY++LI   C + +  EA R++ +M  G       TF+ ++  L +  R+ EA G+  VM
Sbjct: 232 AYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVM 291

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    PD+  YN L+  +C   N++    +  +M +  L  D   Y+ L+ G C+   V
Sbjct: 292 MKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMV 351

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +EA VL + +         +TY  ++  L +LG
Sbjct: 352 DEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLG 384



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 5/230 (2%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
            T ++L +L  +   L R     P    Y T+I  LCK + I +ALR+  ++   G  + 
Sbjct: 175 QTRDALQLLQKMEEDLVR-----PNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVD 229

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            + ++ ++       +  EA  L+ +M    ++PD   +N L+ A C +G +    GV  
Sbjct: 230 VVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFA 289

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            M +     D  TY+AL+ G C +  V EA  L  RMV  G       Y  ++    ++ 
Sbjct: 290 VMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKID 349

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
              +A+        +++  +   + SL   L  L R +    ++ EM  R
Sbjct: 350 MVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDR 399



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 121/282 (42%), Gaps = 8/282 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+ A    L+N   H+  L     LL    +        TFN + N      +   + + 
Sbjct: 88  PSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLIN---GFCINGMVSKA 144

Query: 93  LA-RLD---KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +A RLD   KG+P    +Y +LI  LCK  +  +AL+++  M E     + IT+  ++  
Sbjct: 145 MAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDG 204

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L + + + +A  L  ++    +  D+ AYN L+   C  G     + +L  M    +  D
Sbjct: 205 LCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPD 264

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             T++ LV   C+ GR+ EA  +   M+  G+     TY  +M         ++A +   
Sbjct: 265 DYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFN 324

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               R ++ D   +  L +    ++  +EA  + KE+  ++L
Sbjct: 325 RMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNL 366



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 88/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +D L+G + ++     A+ +   +   G   S  T   +++       +  A+ L
Sbjct: 53  PPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSL 112

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  + ++   P++  +N L+  +C  G ++        +  +    D  +Y +L+ G C+
Sbjct: 113 LGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCK 172

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+  +A  LL++M +D       TY+ V+  L +    A A++   +   R I +D   
Sbjct: 173 NGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVA 232

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL      + ++ EA  +L  M
Sbjct: 233 YNSLIHGCCSVGQWREATRLLTMM 256



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y++LI  LCKL ++     +VD M + G     +T++  L    + K  E+A  L
Sbjct: 368 PNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISL 427

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              + +  + PD   Y+ ++  +C    L      L+ +       + RTY  ++   C+
Sbjct: 428 FRQIVQ-GIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCK 486

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
               +EA  LL +M D+       T+  ++GAL
Sbjct: 487 DCSFDEAMTLLSKMDDNDCPPDAVTFETIIGAL 519



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 1/209 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CK+  +DEA+ +   +       +  T++ ++  L +  RM     L
Sbjct: 333 PDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQEL 392

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +   SPD+  YN  L A+C          + +++ +  +  D   YD +V   C+
Sbjct: 393 VDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYMYDVIVENFCK 451

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +++ A   L+ ++  G      TY  ++ AL +   + +A+  +      D   D   
Sbjct: 452 GEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVT 511

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F ++   L      ++A  +  EM +R L
Sbjct: 512 FETIIGALQERNETDKAEKLRLEMIERGL 540



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 6/138 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+   C    + EA  + + M + G     + ++ +++   +   ++EA   
Sbjct: 298 PDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEA--- 354

Query: 161 MEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           M + KEIR     P+L  YN L+   C  G ++    ++ +M +     D  TY+  +  
Sbjct: 355 MVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDA 414

Query: 218 ACRAGRVEEAFVLLRRMV 235
            C++   E+A  L R++V
Sbjct: 415 FCKSKPYEKAISLFRQIV 432


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 3/185 (1%)

Query: 91  RTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           R   R+ +G  FP      TL+    K + +  + R   +  + G+    + F+ +LS+ 
Sbjct: 582 RIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIF 641

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           TR    ++A G++E ++E  +SPDL  YN L+  Y  +G       +LK +E+ +L  D 
Sbjct: 642 TRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDL 701

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            +Y+ ++ G CR G ++EA  +L  M + G      TY   +     +G +A+ ++ V+ 
Sbjct: 702 VSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAE-IEDVIE 760

Query: 269 CGGRD 273
           C  ++
Sbjct: 761 CMAKN 765



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 60/143 (41%)

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           L V+D M   G      T   +LS   R   + EA      +K     P    YN LL  
Sbjct: 266 LGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQV 325

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           +   G  T    VLK+MEE    AD+ TY+ LV    RAG  +EA  ++  M   G    
Sbjct: 326 FGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPN 385

Query: 243 YSTYAHVMGALLRLGYYAQAVKF 265
             TY  V+ A  + G   +A+K 
Sbjct: 386 AITYTTVIDAYGKAGKEDEALKL 408



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I    K  K DEAL++   M E G   +  T++ +LS+L +  R  E   +
Sbjct: 384 PNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKM 443

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK    SP+   +N +L     KG     + V ++M+      D  T++ L+    R
Sbjct: 444 LCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGR 503

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            G   +A  +   M   G +   +TY  ++ AL R G +
Sbjct: 504 CGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDW 542



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G+    +T++ +L V  +     EA  +++ M+E     D   YN L+ AY   G     
Sbjct: 311 GYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEA 370

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           +GV++ M ++ +  +A TY  ++    +AG+ +EA  L   M + G      TY  V+  
Sbjct: 371 AGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSL 430

Query: 253 LLRLGYYAQAVKFVMVC 269
           L +     + +K  M+C
Sbjct: 431 LGKKSRSNEMIK--MLC 445



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 114/285 (40%), Gaps = 12/285 (4%)

Query: 33  PTSAYYDDLVNAAGHE-RDLETVRYLLNKRARDCCFN--TANTFNFITNTENSLSVLSDL 89
           P +  Y+ +++  G + R  E ++ L + ++  C  N  T NT   +   +     ++ +
Sbjct: 419 PNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRV 478

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            R +     GF P +  ++TLI    +     +A ++   M   GF     T++ +L+ L
Sbjct: 479 FREMKSC--GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNAL 536

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            R         ++  MK     P  T+Y+ +L  Y   GN      +  +++E ++    
Sbjct: 537 ARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSW 596

Query: 209 RTYDALVLG--ACRA-GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
                L+L    CRA    E AF L ++       V++++   ++    R   Y QA   
Sbjct: 597 MLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNS---MLSIFTRNNMYDQAEGI 653

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +       +  D   + SL    +      +A  ILK + K  LK
Sbjct: 654 LESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLK 698



 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 7/190 (3%)

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A +++D +    + L    +  IL   +R  + E+A  L E MKE+  SP L  YN +L 
Sbjct: 194 AAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILD 253

Query: 182 AYCFKG-NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA---FVLLRRMVDD 237
            +   G +     GVL +M  + L  D  T   ++    R G + EA   F  L+    +
Sbjct: 254 VFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYE 313

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
             +V Y+    V G   + G Y +A+  +          D+  +  L +  +      EA
Sbjct: 314 PGTVTYNALLQVFG---KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEA 370

Query: 298 NFILKEMNKR 307
             +++ M K+
Sbjct: 371 AGVIEMMTKK 380



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/140 (20%), Positives = 61/140 (43%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D   P    Y++L+    +  +  +A  ++  + +       ++++ ++    R   M
Sbjct: 658 REDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLM 717

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  ++  M E  + P +  YN  ++ Y   G       V++ M +     +  T+  +
Sbjct: 718 QEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMV 777

Query: 215 VLGACRAGRVEEAFVLLRRM 234
           V G CRAG+  EA   + ++
Sbjct: 778 VDGYCRAGKYSEAMDFVSKI 797


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 35/245 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +IG  C+   + +ALRV D M   G     +T++ +L+ L + +R+ +A GL
Sbjct: 14  PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 73

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  V PDL  +  L+  YC +G L     +   M  ++L  D  TY+ L+ G CR
Sbjct: 74  LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 133

Query: 221 A-----------------------------------GRVEEAFVLLRRMVDDGQSVLYST 245
                                               G+VE+AF  L  M++ G      T
Sbjct: 134 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT 193

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y  ++    R G  ++  KF+       +  D   + +L    I  ++ ++A  +L  M 
Sbjct: 194 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMME 253

Query: 306 KRDLK 310
           K  ++
Sbjct: 254 KEKVQ 258



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 125/321 (38%), Gaps = 59/321 (18%)

Query: 1   MSLLRKLPTKFLIPQSVLVTR---SFTKSGAFPDE-------------PTSAYYDDLVNA 44
           M+ LR++    L+P  V+ T     F ++G   D              P    Y+ L+N 
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60

Query: 45  AGHERDLETVRYLLNK-RARD-----CCFNTA--------------NTFNFITN------ 78
              ER L     LLN+ R R      C F T                 F+ + N      
Sbjct: 61  LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 120

Query: 79  --TENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALR 124
             T N+L  +  +CR    LDK             FP    Y  LI   C+  ++++A  
Sbjct: 121 IVTYNTL--IDGMCRQ-GDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 177

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
            +D M   G   + +T++ I+    R   + +    ++ M   +VSPDL  YN L+  Y 
Sbjct: 178 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYI 237

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            +  +     +L  ME+EK+  D  TY+ L+ G    G V+EA  +  +M   G      
Sbjct: 238 KEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRY 297

Query: 245 TYAHVMGALLRLGYYAQAVKF 265
           TY  ++   +  G   +A + 
Sbjct: 298 TYMSMINGHVTAGNSKEAFQL 318



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L++    + DL+    L +       F    T++ + ++      + D    
Sbjct: 119 PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF 178

Query: 93  LARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  + +KG  P    Y+++I   C+   + +  + +  M         IT++ ++    +
Sbjct: 179 LDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIK 238

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +M +A+ L+ +M++ +V PD+  YN L+  +   GN+     + +KM  + +  D  T
Sbjct: 239 EDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYT 298

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDG 238
           Y +++ G   AG  +EAF L   M+  G
Sbjct: 299 YMSMINGHVTAGNSKEAFQLHDEMLQRG 326


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 1/213 (0%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D  +P    Y  LI  LC  ++  EAL +V  M E G   +  T+  ++  L    ++E+
Sbjct: 317 DDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEK 376

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L+  M E  + P++  YN L+  YC +G +     V++ ME   L  + RTY+ L+ 
Sbjct: 377 ARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIK 436

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+   V +A  +L +M++        TY  ++    R G +  A + + +   R +  
Sbjct: 437 GYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           D   + S+   L   +R  EA  +   + ++D+
Sbjct: 496 DPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDV 528



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 5/187 (2%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           N   ++ VL+   + L R  K  P    Y++LI   C+    D A R++ +M + G    
Sbjct: 442 NVHKAMGVLN---KMLER--KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
             T+  ++  L + KR+EEA  L + +++  V P++  Y  L+  YC  G +     +L+
Sbjct: 497 PWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLE 556

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           KM  +    ++ T++AL+ G C  G+++EA +L  +MV        ST   ++  LL+ G
Sbjct: 557 KMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDG 616

Query: 258 YYAQAVK 264
            +  A +
Sbjct: 617 DFDHAYR 623



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 6/227 (2%)

Query: 88  DLCRTLARLDKGFPRK-----SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           DLCR + + D+ F  K       Y+TL+  L +   +DE  +V   M E     +  T++
Sbjct: 164 DLCRKMNK-DESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYN 222

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +++   +   +EEA   + ++ E  + PD   Y  L+  YC + +L +   V K+M  +
Sbjct: 223 KMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLK 282

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
               +   Y  L+ G C   R++EA  L  +M DD       TY  ++ AL      ++A
Sbjct: 283 GCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEA 342

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  V     + IK +   +  L   L    +  +A  +L +M ++ L
Sbjct: 343 LNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGL 389



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           A LD  F     Y +LI   C+ K +D A +V   M   G   + + +  ++  L   +R
Sbjct: 247 AGLDPDF---FTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERR 303

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           ++EA  L   MK+    P +  Y  L+ A C     +    ++K+MEE+ +  +  TY  
Sbjct: 304 IDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTV 363

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+   C   ++E+A  LL +M++ G      TY  ++    + G    A+  V +   R+
Sbjct: 364 LIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRN 423

Query: 274 IKLDTELFGSL 284
           ++ +T  +  L
Sbjct: 424 LRPNTRTYNEL 434



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 69/159 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    ++ LI  LC   K+ EA  + + M +     +  T   ++  L +    + A+ 
Sbjct: 564 LPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYR 623

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M      PD   Y   +  YC +G L     ++ KM+E  +  D  TY +L+ G  
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYG 683

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
             GR   AFV+L+RM D G      T+  ++  LL + Y
Sbjct: 684 DLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKY 722



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 110/275 (40%), Gaps = 3/275 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y++L+     +R++     +LNK           T+N + + +          R 
Sbjct: 426 PNTRTYNELIKGYC-KRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L+ + D+G  P    Y ++I  LCK K+++EA  + D + +     + + +  ++    +
Sbjct: 485 LSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCK 544

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++ EA  ++E M      P+   +N L+   C  G L   + + +KM +  L     T
Sbjct: 545 AGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVST 604

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
              L+    + G  + A+   ++M+  G      TY   +    R G    A   V    
Sbjct: 605 DTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMK 664

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
              +  D   + SL      L R N A  +LK M+
Sbjct: 665 ENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMH 699



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 109/305 (35%), Gaps = 60/305 (19%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDL 89
           P    Y  L++       +     +L K     C   + TFN + +   T+  L   + L
Sbjct: 530 PNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLL 589

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              + ++D   P  S    LI RL K    D A R    M   G    A T+   +    
Sbjct: 590 EEKMVKIDLQ-PTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYC 648

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY-------------------------- 183
           R  R+++A  ++  MKE  VSPDL  Y+ L+  Y                          
Sbjct: 649 REGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQH 708

Query: 184 ------------------------CFKGNLTATSGV---LKKMEEEKLGADARTYDALVL 216
                                   C   N+     V   L+KM E  +  +A++Y+ L+L
Sbjct: 709 TFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLML 768

Query: 217 GACRAGRVEEAFVLLRRMVD-DGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRD 273
           G C  G +  A  +   M   +G S     +  ++    +L  + +A K V  M+C G  
Sbjct: 769 GICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHL 828

Query: 274 IKLDT 278
            +L++
Sbjct: 829 PQLES 833



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 1/148 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWG 159
           P   +Y+ L+  +C++  +  A +V D M +  G   S + F+ +LS   + ++  EA  
Sbjct: 758 PNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAK 817

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +++ M  +   P L +   L+     KG     + V + + +     D   +  ++ G  
Sbjct: 818 VVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVG 877

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           + G VE  + L   M  +G +    TY+
Sbjct: 878 KQGLVEAFYELFNVMEKNGCTFSSQTYS 905


>gi|218194640|gb|EEC77067.1| hypothetical protein OsI_15461 [Oryza sativa Indica Group]
          Length = 548

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 2/204 (0%)

Query: 96  LDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           L KG P      + ++I  LCK  ++ E   +VD++   G   + ITF+ ++        
Sbjct: 219 LSKGIPPPCIKFFTSIINNLCKEGRVAEGKDIVDLIIHTGQRPNLITFNSLVDGYCLVGN 278

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M+EA GL++ M+ + V PD+  YN L+  YC  G +     + + M  +++   + +Y+ 
Sbjct: 279 MKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNI 338

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++ G  +A R   A  +   M++ G +V   TYA V+G L R     +A   +      +
Sbjct: 339 ILHGLFQARRTVVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMN 398

Query: 274 IKLDTELFGSLGSKLIGLERFNEA 297
           +K D   F  +   +  + R  EA
Sbjct: 399 VKFDILTFNIVIRAMFKVGRMQEA 422


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 113/234 (48%), Gaps = 17/234 (7%)

Query: 14  PQ-SVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN-----KRARDCCF 67
           PQ ++++ ++  + G    +P+ A Y  L+NA   ++  + +  +++     +   D  F
Sbjct: 88  PQEAIVIFQNLIEGG---HQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIF 144

Query: 68  NTA--NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
             A  N F    N E++  V+  +  +  +     P    Y+TLI       K DE++++
Sbjct: 145 FNALINAFAESGNMEDAKKVVQKMKESGLK-----PSACTYNTLIKGYGIAGKPDESMKL 199

Query: 126 VDIMA-EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +D+M+ EG    +  T++ ++  L + + + EAW ++  M    + PD+  +N + TAY 
Sbjct: 200 LDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYA 259

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             G       ++ +M+   L  + RT   ++ G CR G+V+EA   + RM D G
Sbjct: 260 QNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLG 313



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 6/246 (2%)

Query: 67  FNTANTFNFITNTENSLSVLS-DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
           F+  N  N IT   NS S  S   C  + + D    R  +   ++  L K  K  EA+ +
Sbjct: 39  FDGKNHMNEITKATNSGSQPSCTFC--MGKNDCQIVR--SRTKVMNILIKSGKPQEAIVI 94

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
              + EGG   S  T+  +L+ LT  K  +    ++ +++E ++ PD   +N L+ A+  
Sbjct: 95  FQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIFFNALINAFAE 154

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ-SVLYS 244
            GN+     V++KM+E  L   A TY+ L+ G   AG+ +E+  LL  M  +G       
Sbjct: 155 SGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLK 214

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           TY  ++ AL ++   ++A   V       ++ D   F ++ +      +  +A  ++ EM
Sbjct: 215 TYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEM 274

Query: 305 NKRDLK 310
            +  LK
Sbjct: 275 QRNSLK 280



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 123/315 (39%), Gaps = 46/315 (14%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK------RARDCCFNT-ANTFNFITNTENSLS 84
           +P S +++ L+NA     ++E  + ++ K      +   C +NT    +      + S+ 
Sbjct: 139 KPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMK 198

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +L DL  T   +    P    Y+ LI  LCK++ I EA  VV  M   G     +TF+ I
Sbjct: 199 LL-DLMSTEGNVK---PNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTI 254

Query: 145 -----------------------------------LSVLTRGKRMEEAWGLMEVMKEIRV 169
                                              +S   R  +++EA   +  MK++ +
Sbjct: 255 ATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGM 314

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            P+L   N L+  +    +      VLK MEE ++  D  TY  ++    +AG +E+   
Sbjct: 315 QPNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKE 374

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           +   M+  G       Y+ +    +R     +A + + V     +  +  +F ++ S   
Sbjct: 375 IYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWC 434

Query: 290 GLERFNEANFILKEM 304
            + R + A  +  +M
Sbjct: 435 SVGRMDNAMRVFDKM 449



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 2/161 (1%)

Query: 29  FPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD 88
           F   P    Y  ++NA      LE  + + N   +      A+ ++ +         +  
Sbjct: 347 FQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEK 406

Query: 89  LCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
               L  + K    P    + T+I   C + ++D A+RV D M E G   +  TF  ++ 
Sbjct: 407 AEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIW 466

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
                K+  +A G++++M+E  V P  +    +  A+ F G
Sbjct: 467 GYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAWRFAG 507



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  L     + +++++A  ++ +M + G   + + F  ++S      RM+ A  +
Sbjct: 386 PDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRV 445

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  VSP+L  +  L+  Y          G+L+ MEE  +     T   LV  A R
Sbjct: 446 FDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTI-LLVAEAWR 504

Query: 221 -AGRVEEAFVLLR 232
            AG  E A  LLR
Sbjct: 505 FAGFKERAKTLLR 517



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 61/134 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++    +   +++   + + M + G    A  +  +     R + ME+A  +
Sbjct: 351 PDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEM 410

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + VM +  V P++  +  +++ +C  G +     V  KM E  +  + +T++ L+ G   
Sbjct: 411 LTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAE 470

Query: 221 AGRVEEAFVLLRRM 234
           A +  +A  +L+ M
Sbjct: 471 AKQPWKAEGMLQIM 484



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 94/251 (37%), Gaps = 15/251 (5%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPT-----SAYYDDLVNAAGHERDLETVRYL 57
           L+R L     I ++  V    T SG  PD  T     +AY  +   A      LE  R  
Sbjct: 219 LIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNS 278

Query: 58  LNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCK 115
           L    R C          I +       + +  R + R+ D G  P     ++L+     
Sbjct: 279 LKPNERTC--------TIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVD 330

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
           +   D    V+ +M E       IT+  I++  ++   +E+   +   M +  V PD  A
Sbjct: 331 MMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHA 390

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           Y+ L   Y     +     +L  M +  +  +   +  ++ G C  GR++ A  +  +M 
Sbjct: 391 YSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMG 450

Query: 236 DDGQSVLYSTY 246
           + G S    T+
Sbjct: 451 EFGVSPNLKTF 461


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 113/265 (42%), Gaps = 8/265 (3%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           LV   F K G  P+E T   Y+ LV+    +  LE    LLN+   + C     TF  + 
Sbjct: 262 LVDNMFLK-GCVPNEVT---YNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLI 317

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N        SD  R L  L+    R +   Y +LI  LCK  K ++A+ +   M   G G
Sbjct: 318 NGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCG 377

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + I +  ++  L R  +++EA G +  MK     P+   Y+ L+  Y   G+      V
Sbjct: 378 PNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILV 437

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            K+M       +   Y  L+ G C+ G+  EA ++ ++M+  G  +    Y+ ++     
Sbjct: 438 WKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCN 497

Query: 256 LGYYAQAVKFV--MVCGGRDIKLDT 278
                Q +K    M+C G  ++ D 
Sbjct: 498 ANLVEQGLKLFNQMLCQGPVVQPDV 522



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 133/315 (42%), Gaps = 32/315 (10%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHE----RDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           G F  + T   ++ ++N    E    R LE   +++  ++ +   N A TFN        
Sbjct: 124 GEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPN-ALTFNL------- 175

Query: 83  LSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
             V+  +CR L  +DK              P    Y TL+  LCK ++IDEA+ ++D M 
Sbjct: 176 --VIKAMCR-LGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQ 232

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   + + F+ ++S L +   +  A  L++ M      P+   YN L+   C KG L 
Sbjct: 233 VEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLE 292

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               +L +M   K   +  T+  L+ G    GR  +   +L  +   G       Y+ ++
Sbjct: 293 KAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLI 352

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM-NKRDL 309
             L + G + QA++      G+    +T ++ +L   L    + +EA   L EM NK  L
Sbjct: 353 SGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYL 412

Query: 310 KMGFK----LRDYYE 320
              F     +R Y+E
Sbjct: 413 PNSFTYSSLMRGYFE 427



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  LI  LCK  K  EAL V   M   G  L  + +  ++        +E+   L   M
Sbjct: 452 CYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQM 511

Query: 165 --KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
             +   V PD+  YN LL A+C + ++     +L  M ++    D  T D
Sbjct: 512 LCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCD 561


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 2/235 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P   ++  L++    E +L   R L  +  R        T+N + N       L D   
Sbjct: 251 DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKY 310

Query: 92  TL-ARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                + KG FP    Y+TLI   CK K++++ +++   M   G    A T++ ++    
Sbjct: 311 MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 370

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  ++  A  +   M +  VSPD+  YN LL   C  G +     +++ +++ ++  D  
Sbjct: 371 QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 430

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           TY+ ++ G CR  +++EA+ L R +   G       Y  ++  L R G   +A K
Sbjct: 431 TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADK 485



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 22/218 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L+N       L   +Y+ +      CF    T+N         ++++  C++
Sbjct: 287 PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYN---------TLITGFCKS 337

Query: 93  LARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             R++ G                  Y+TLI   C+  K++ A +V + M + G     +T
Sbjct: 338 -KRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVT 396

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ +L  L    ++E+A  ++E +++  +  D+  YN ++   C    L     + + + 
Sbjct: 397 YNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLT 456

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            + +  DA  Y  ++ G CR G   EA  L RRM +DG
Sbjct: 457 RKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 494



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI   C    + +A  + D+M   G     +T++ +++   + KR+E+   L
Sbjct: 287 PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 346

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    +  D   YN L+  YC  G L     V  +M +  +  D  TY+ L+   C 
Sbjct: 347 FCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCN 406

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E+A V++  +      V   TY  ++  L R     +A         + +K D   
Sbjct: 407 NGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIA 466

Query: 281 FGSLGSKLI--GLERFNEANFILKEMNKRDLKMGFK------LRDYY 319
           + ++ S L   GL+R  EA+ + + M K D  M  +      LRD+Y
Sbjct: 467 YITMISGLCRKGLQR--EADKLCRRM-KEDGFMPSERIYDETLRDHY 510



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 1/141 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P    Y+T+I  LCK + ++ AL V   M + G    A+T++ ++S L+   R  +A
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M + ++ P++  +  L+  +  +GNL     + K+M    +  +  TY++L+ G
Sbjct: 239 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 298

Query: 218 ACRAGRVEEAFVLLRRMVDDG 238
            C  G + +A  +   MV  G
Sbjct: 299 FCIHGCLGDAKYMFDLMVSKG 319



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 118/283 (41%), Gaps = 8/283 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLET---VRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           P    Y+ ++N     RDL     V Y + K+        A T+N + +  ++    +D 
Sbjct: 182 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRA---DAVTYNTLISGLSNSGRWTDA 238

Query: 90  CRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            R L  + K    P    +  LI    K   + EA  +   M       +  T++ +++ 
Sbjct: 239 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 298

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
                 + +A  + ++M      PD+  YN L+T +C    +     +  +M  + L  D
Sbjct: 299 FCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 358

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A TY+ L+ G C+AG++  A  +  RMVD G S    TY  ++  L   G   +A+  V 
Sbjct: 359 AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVE 418

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                ++ +D   +  +   L   ++  EA  + + + ++ +K
Sbjct: 419 DLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVK 461



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           ++  LI   C+  ++  AL ++  M + GF  S +T   +L+   +G R +EA  L++ M
Sbjct: 116 SFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM 175

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P++  YN ++   C   +L     V   ME++ + ADA TY+ L+ G   +GR 
Sbjct: 176 DGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRW 235

Query: 225 EEAFVLLRRMV 235
            +A  LLR MV
Sbjct: 236 TDAARLLRDMV 246



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P      +L+   C+  +  EA+ +VD M   GF  + + ++ +++ L + + +  A
Sbjct: 144 GFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNA 203

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             +   M++  +  D   YN L++     G  T  + +L+ M + K+  +   + AL+  
Sbjct: 204 LEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDT 263

Query: 218 ACRAGRVEEAFVLLRRMV 235
             + G + EA  L + M+
Sbjct: 264 FVKEGNLLEARNLYKEMI 281



 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 83/192 (43%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K D+A  +   M +     S + F  +L+V+ +  + +    L   M+ + +S DL ++ 
Sbjct: 59  KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C    L+    +L KM +        T  +L+ G C+  R +EA  L+  M   
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 178

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G       Y  V+  L +      A++       + I+ D   + +L S L    R+ +A
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238

Query: 298 NFILKEMNKRDL 309
             +L++M KR +
Sbjct: 239 ARLLRDMVKRKI 250


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 5/195 (2%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKG  P +  Y  LI  LCK   +D+AL ++D M E G  ++   ++ +++   +   ++
Sbjct: 365 DKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLD 424

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A G +  M EI ++P+  +Y+ ++   C KG+L+    + +KM E+ +  +  T+ AL+
Sbjct: 425 MAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALI 484

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRD 273
            G C+A +++EA  L  +M +        T+  V+     +G   +A +    M+C  R 
Sbjct: 485 NGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMC--RG 542

Query: 274 IKLDTELFGSLGSKL 288
           +  D   + SL S L
Sbjct: 543 LTPDNYTYRSLISGL 557



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 14/180 (7%)

Query: 79  TENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVV 126
           +E + S + D  R   R+++ F            P   AY+ L+  +CK     EA R+V
Sbjct: 301 SEANCSFMLDGLRKKGRVEEAFRLACQLGELRMVPNIFAYNALLNNMCKNGMFSEADRLV 360

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           + M++ G   + +T+  ++  L +   M++A  +++ M+E  V   +  YN L+   C K
Sbjct: 361 NEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKK 420

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
            +L    G L +M E  L  +A +Y  ++ G CR G +  A  L R+M + G  V ++TY
Sbjct: 421 DDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKG--VAWNTY 478



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 35/238 (14%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           TL+   C+ +++D AL +   MA  GF  S      +L  L +  R+EEA+ L   + E+
Sbjct: 272 TLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQLGEL 331

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
           R+ P++ AYN LL   C  G  +    ++ +M ++ L  +  TY  L+   C+ G +++A
Sbjct: 332 RMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDA 391

Query: 228 FVLLRR-----------------------------------MVDDGQSVLYSTYAHVMGA 252
             +L R                                   MV+ G +   ++Y+ V+  
Sbjct: 392 LCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAG 451

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           L R G  + AV+       + +  +T  F +L +     ++ +EA+ +  +M + +L+
Sbjct: 452 LCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLE 509



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y++LI   CK   +D A+  +  M E G   +A ++ P+++ L R   +  A  L   M 
Sbjct: 410 YNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMA 469

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  V+ +   +  L+  +C    +   S +  KM E  L  +  T++A++ G C  G + 
Sbjct: 470 EKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIR 529

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +AF L  +M+  G +    TY  ++  L      ++A +FV
Sbjct: 530 KAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFV 570



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  ++Y  +I  LC+   +  A+ +   MAE G   +  TF  +++   + K+M+EA  L
Sbjct: 440 PNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRL 499

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
              M E  + P+   +N ++  YC  G++     +  +M    L  D  TY +L+ G C
Sbjct: 500 FNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLC 558



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 5/188 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDL 89
           P +  Y  LVN       L +   L  +         + TFN   +   TE +L    DL
Sbjct: 685 PNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDL 744

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               A L        + +TLI   CK+ +I EA+ ++    E GF    I++  ++  L 
Sbjct: 745 --YFAMLQGFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELC 802

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   + EA  L   M    V PD+ AYN L+      G      G+   M ++ +  +  
Sbjct: 803 KKGDINEAIELWNEMLYKGVKPDIVAYNILIRWCNIHGESDKCLGIYIDMVKKGVQPNWH 862

Query: 210 TYDALVLG 217
           T+ AL +G
Sbjct: 863 THRALFVG 870



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 20/229 (8%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT----- 92
           Y+ L+N    + DL+     L++                 N  +   V++ LCR      
Sbjct: 410 YNSLINCCCKKDDLDMAMGFLSEMVE---------IGLTPNAASYSPVIAGLCRKGDLSG 460

Query: 93  LARLDKGFPRKS-AYDT-----LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
              L +    K  A++T     LI   CK KK+DEA R+ + M E     + +TF+ ++ 
Sbjct: 461 AVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIE 520

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                  + +A+ L + M    ++PD   Y  L++  C     +     +  +E      
Sbjct: 521 GYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADLENNCSVL 580

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +  +  AL+ G CR GR+ EA+ +   M   G  +   ++  ++ A L+
Sbjct: 581 NKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALK 629



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 15/161 (9%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           F+ + EN+ SVL+    +L  L  GF             C+  ++ EA  V + MA  G 
Sbjct: 569 FVADLENNCSVLNKF--SLTALLHGF-------------CREGRLTEAYHVWNEMAMWGG 613

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
            L  I+F  I+    +    E++  L   MKE  V PD   +  ++  Y  +GN+     
Sbjct: 614 KLDLISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALN 673

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
              +M  +    +  TY ALV   C++  +  A +L + M+
Sbjct: 674 CWDEMIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEML 714



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 4/151 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  +I    K   + +AL   D M   G   + +T+  +++ L +   +  A  L
Sbjct: 650 PDNVFHTCMINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNLCKSWHLSSAELL 709

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P+   +N  L  +  +GNL     +   M +  L A+  + + L+ G C+
Sbjct: 710 CKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDLYFAMLQGFL-ANIVSVNTLIKGFCK 768

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
            G+++EA  L+ R  ++G     + YST  H
Sbjct: 769 VGQIQEAIDLISRSTENGFFPDCISYSTVIH 799



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 48/114 (42%)

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           V+ +    G      T   IL  L + ++   A  L + M    V  D   Y   + AYC
Sbjct: 149 VLHLSLSAGIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYC 208

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
              NL    G++ +M++E     A  Y+ L+ G C+  RV EA  +   M+  G
Sbjct: 209 EVRNLDGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARG 262


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 87/167 (52%), Gaps = 5/167 (2%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++KG  P    +  LI  LCK  ++ EA ++++ M  GG   + +T+  +++ L +  ++
Sbjct: 211 IEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQV 270

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A+ L ++M+     P++  +N L+   C    +     +  +M E     D  TY++L
Sbjct: 271 DDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSL 330

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQS----VLYSTYAHVMGALLRLG 257
           + G C++ +V+EAF L + + + G S    V YST  H   AL R+ 
Sbjct: 331 IDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMA 377



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 10/250 (4%)

Query: 10  KFLIPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRA--RDCC 66
           KF   Q +L  R     G  PD  T S   D L      E+    +  ++ +     D  
Sbjct: 93  KFDEAQGML--REMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAA 150

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRV 125
           F T      + N  NS+ + S +   +  + KGF P    ++ +I   CK K +D A ++
Sbjct: 151 FET--IIQRLCNKYNSVELASKVLGVV--IAKGFTPTVLMFNLVINGFCKAKDLDSAYKL 206

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           +++M E G   +  TF  +++ L +  R+ EA  L+E M     SP++  Y+ ++   C 
Sbjct: 207 LEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCK 266

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           +G +     + + ME      +  T++ L+ G C+A R+EEA  L  RM + G +    T
Sbjct: 267 QGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIIT 326

Query: 246 YAHVMGALLR 255
           Y  ++  L +
Sbjct: 327 YNSLIDGLCK 336



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 96/190 (50%), Gaps = 11/190 (5%)

Query: 57  LLNKRARDCCFNTANTFNFI-------TNTENSLSVLSDLCRTLARLDKGF-PRKSAYDT 108
           L +  A   C + A  +N +       +    +L+VL    + + + D+ F P  SA D 
Sbjct: 452 LFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLE---QVIDKRDRKFNPSSSAVDA 508

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  LC++ + D+A +++  M+E GF  +  +++ +LS L+R +R +EA  + E M    
Sbjct: 509 LVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAG 568

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
            +P+++  N +++  C    +     ++++M +     D  T + L+ G C++GR + A 
Sbjct: 569 PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLAR 628

Query: 229 VLLRRMVDDG 238
            LL  M + G
Sbjct: 629 KLLEEMTEAG 638



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 1/207 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRMEEAWG 159
           P    + TLI  LCK    ++A RV++ + + G G S   F  I+  L  +   +E A  
Sbjct: 111 PDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASK 170

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ V+     +P +  +N ++  +C   +L +   +L+ M E+    +  T+  L+ G C
Sbjct: 171 VLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLC 230

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +A RV EA  LL +MV  G S    TY+ V+  L + G    A +   +   R+   +  
Sbjct: 231 KANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVV 290

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
               L   L   +R  EA  +   M +
Sbjct: 291 THNILIDGLCKAKRIEEARQLYHRMRE 317



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVD 127
           A T++ + +   +L  ++D CR  + L DKGF P  + Y +LI   CK  +  E + +V+
Sbjct: 360 AVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVE 419

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            MA  GF     T   +L  L  G   E A  L + M     + D   YN ++       
Sbjct: 420 EMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARAS 479

Query: 188 NLTATSGVLKKM---EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
                  VL+++    + K    +   DALV   C+ GR ++A  LL +M + G +   S
Sbjct: 480 KHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVS 539

Query: 245 TYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
           +Y  ++  L RL  + +A +    MV  G   ++ T     + S L    + ++A  +++
Sbjct: 540 SYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEIST--VNVVISWLCSAAKVDDAYELVQ 597

Query: 303 EMNK 306
            M+K
Sbjct: 598 RMSK 601



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 130/333 (39%), Gaps = 47/333 (14%)

Query: 17  VLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI 76
           V++ + FT        PT   ++ ++N     +DL++   LL       C     TF  +
Sbjct: 174 VVIAKGFT--------PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTIL 225

Query: 77  TNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
                  + + +  + L ++  G   P    Y T+I  LCK  ++D+A  +  +M     
Sbjct: 226 ITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNC 285

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC---------- 184
             + +T + ++  L + KR+EEA  L   M+E   +PD+  YN L+   C          
Sbjct: 286 PPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQ 345

Query: 185 -FK-------------------------GNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            F+                         G +     +   + ++    D  TY +L+L  
Sbjct: 346 LFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEY 405

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+  R  E   L+  M   G     +T + V+G L    +  +A++       R    D 
Sbjct: 406 CKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDA 465

Query: 279 ELFGSLGSKLIGLERFNEANFILKE-MNKRDLK 310
            ++  +   +    + N+A  +L++ ++KRD K
Sbjct: 466 LIYNLVVEGMARASKHNKALAVLEQVIDKRDRK 498



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 90/179 (50%), Gaps = 5/179 (2%)

Query: 39  DDLVNAAGHERDLETVRYLLNKRARDCCFN-TANTFNFITNTENSLSVLSDLCRTLARL- 96
           + +  A+ H + L  +  +++KR R   FN +++  + +  +   +    D  + L ++ 
Sbjct: 473 EGMARASKHNKALAVLEQVIDKRDRK--FNPSSSAVDALVESLCQVGRTDDAKQLLHKMS 530

Query: 97  DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           ++GF    S+Y+ L+  L +L++ DEA +V + M   G      T + ++S L    +++
Sbjct: 531 ERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVD 590

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +A+ L++ M ++   PD+   N L+  YC  G       +L++M E  L  +  T+D L
Sbjct: 591 DAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 1/139 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P K  Y  LI        +D A+++++ M   GF  +A+    ++  L    R+ EA  
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M +   +PD+  Y  L+ A C  G      G+L++M       D  T+  L+ G C
Sbjct: 66  HFRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLC 124

Query: 220 RAGRVEEAFVLLRRMVDDG 238
           + G  E+AF +L  ++  G
Sbjct: 125 KFGSEEQAFRVLEDVIQRG 143



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 1/127 (0%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  ++   +    ++ A  L+E MK      +   +  L+   C  G +       + M
Sbjct: 11  TYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM 70

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            ++    D  TY ALV   C+AG+ +EA  +LR M+  G +    T++ ++  L + G  
Sbjct: 71  AKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSE 129

Query: 260 AQAVKFV 266
            QA + +
Sbjct: 130 EQAFRVL 136


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P    Y  LI   C   K D A ++++ M   G   +   +  +++   +  R+EE
Sbjct: 265 DQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEE 324

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  + + MK   + PD   Y  L+  +C  G +     +LK+M E K  ADA T++ L+ 
Sbjct: 325 AKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLK 384

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           G CR GR +EA  +L  +  +G  +   +Y  V+  L + G
Sbjct: 385 GLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLCQKG 425



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C + +IDEA+ ++  M E      A+TF+ +L  L R  R +EA  +
Sbjct: 339 PDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRM 398

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E +    V  +  +Y  +L   C KG L  +  +L  M          T + L++  C 
Sbjct: 399 LENLAYEGVYLNKGSYRIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCE 458

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           AG V+ A   L  +   G +    ++AH++  + R
Sbjct: 459 AGMVDNAVTALFGLTQMGFTPEPKSWAHLIEYICR 493



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 124/281 (44%), Gaps = 6/281 (2%)

Query: 36  AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTF-NFITN-TENSLSV-LSDLCRT 92
           A Y  L++     +    V  LL++   + C    N F N + +  ++SL   + ++   
Sbjct: 93  ATYSTLIHKLAQTKKFHAVDALLHQMTYETCKFHENIFLNLMKHFYKSSLHERVLEMFYA 152

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRG 151
           +  + +  P   A  T +  L + K+ID A + +  + E      +   F+ ++    + 
Sbjct: 153 IQPIVREKPSLKAISTCLNILVESKQIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKS 212

Query: 152 KRMEEAWGLMEVMKEIRVS-PDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADAR 209
             +E A  +M  MK+ R S P++  Y+ L+   C  G L     + ++M  ++++  DA 
Sbjct: 213 GDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDAL 272

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C  G+ + A  ++  M  +G       Y+ +M    + G   +A +     
Sbjct: 273 TYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEM 332

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               +K DT  + +L +   G+ R +EA  +LKEM +   K
Sbjct: 333 KSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCK 373



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 72/163 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   CK  +++EA  V D M   G     + +  +++      R++EA  L
Sbjct: 304 PNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMEL 363

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E++   D   +N LL   C +G       +L+ +  E +  +  +Y  ++   C+
Sbjct: 364 LKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLCQ 423

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            G +E++  LL  M+  G    Y+T   ++  L   G    AV
Sbjct: 424 KGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAV 466



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 2/199 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL-SAITFHPILSVLTRGKRMEEAWG 159
           P    ++ L+   CK   ++ AL V+  M +      + IT+  ++  L    R++EA  
Sbjct: 197 PNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIE 256

Query: 160 LMEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
           L E M  + ++ PD   Y+ L+  +C  G       +++ M       +   Y  L+ G 
Sbjct: 257 LFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGF 316

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+ GR+EEA  +   M   G       Y  ++     +G   +A++ +        K D 
Sbjct: 317 CKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADA 376

Query: 279 ELFGSLGSKLIGLERFNEA 297
             F  L   L    RF+EA
Sbjct: 377 VTFNVLLKGLCREGRFDEA 395



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 62/131 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ L+  LC+  + DEALR+++ +A  G  L+  ++  +L+ L +   +E++  L+ +M 
Sbjct: 379 FNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLCQKGELEKSCALLGLML 438

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                P     N LL   C  G +      L  + +     + +++  L+   CR  ++ 
Sbjct: 439 SRGFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQMGFTPEPKSWAHLIEYICRERKLL 498

Query: 226 EAFVLLRRMVD 236
             F L+  +V+
Sbjct: 499 FVFELVDELVE 509


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 133/307 (43%), Gaps = 9/307 (2%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           ++++ L  K  + ++ L+       GA PD  T   Y  L+       +L+    + ++ 
Sbjct: 207 AMIKILCNKGKVQEAELIMGHIFHYGACPDTFT---YTSLIIGHCKNGNLDLAFEMFDRM 263

Query: 62  ARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLK 117
            +D C   + T++ + N   +E  L    D+   +  +DKG  P   AY   I  LC   
Sbjct: 264 VKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEM--IDKGIEPTVHAYTIPIVSLCDAG 321

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           +  EA++++  M + G G +  T+  ++S L+R  + E A G+   M    + P    Y+
Sbjct: 322 RSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYS 381

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+     +G       + + M       +  TY+ ++ G C  G +++A  +  +M+  
Sbjct: 382 ALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKA 441

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G S    TY  ++    + GY   A++ + +  G  +KLDT  + +L S      +   A
Sbjct: 442 GPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHA 501

Query: 298 NFILKEM 304
             +  EM
Sbjct: 502 FSLFNEM 508



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   CK   +D A  + D M + G   +++T+  +++ L    R+EEA  +
Sbjct: 235 PDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDM 294

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M +  + P + AY   + + C  G       +L KM++   G + +TY AL+ G  R
Sbjct: 295 LEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSR 354

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+ E A  +  +M+ DG      TY+ ++  L   G +  A+         D   +TE 
Sbjct: 355 DGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTET 414

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  +      +    +A  I  +M K
Sbjct: 415 YNVIIKGFCSIGYIQKATAIFDQMLK 440



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 113/283 (39%), Gaps = 12/283 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT-------ENSLSV 85
           P    Y  L++    +   E    + +K   D    TA T++ + N        E +L++
Sbjct: 340 PNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTI 399

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
              +           P    Y+ +I   C +  I +A  + D M + G   + IT++ I+
Sbjct: 400 FEWMLS-----HDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIII 454

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            +  +   M  A  L+E+MK   +  D   Y  L++ +   G L     +  +M E  + 
Sbjct: 455 HIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGIS 514

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  TY+A++ G     +V++A  L  +MV+ G      TY  ++    +    ++A  F
Sbjct: 515 PNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENF 574

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
                 + +  +   + S    L    R + A  I  EM KRD
Sbjct: 575 CGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRD 617



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 14/228 (6%)

Query: 48  ERDLETVRYLLNKRARDCCFNTANTFNFIT--------NTENSLSVLSDLCRTLARLDKG 99
           + D+     +LN+  RD  F  A+    +           +  + VLS++  T    D G
Sbjct: 108 KHDMSCFVSMLNRLVRDRLFVPADNVRILMIKSCRNEGEVKRVIQVLSEINTTY---DFG 164

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDI-MAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           +   S + TL+ +L K   +D   R V I M   G   +  TF+ ++ +L    +++EA 
Sbjct: 165 YTLYS-FSTLLIQLGKFD-MDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAE 222

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            +M  +      PD   Y  L+  +C  GNL     +  +M ++    ++ TY AL+ G 
Sbjct: 223 LIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGL 282

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           C  GR+EEA  +L  M+D G       Y   + +L   G   +AVK +
Sbjct: 283 CSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLL 330



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 4/184 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I     + K+D+AL +   M E G   S+ T++ ++S  ++  R+ EA   
Sbjct: 515 PNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENF 574

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P++  Y   +   C  G  +    +  +M++     +  TY +L+ G C+
Sbjct: 575 CGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQ 634

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+ E+A     R++DDG      TY  ++  L   G   +A + V     + ++   E+
Sbjct: 635 EGQAEDA----ERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEI 690

Query: 281 FGSL 284
           + +L
Sbjct: 691 YRAL 694



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 16/291 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDL 89
           P    Y+ ++N       ++    L  K        ++ T+N + +     N +S   + 
Sbjct: 515 PNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENF 574

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           C  + +  +G  P    Y + I  LCK  +   A ++   M +  +  +  T+  ++  L
Sbjct: 575 CGKMVK--QGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGL 632

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +  + E+A  L++   E    P++  Y  L+   C KG       +++ M+++ L    
Sbjct: 633 CQEGQAEDAERLLDDGCE----PNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSE 688

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
             Y AL++G C+   VE A  +   MV  G     S Y  ++ AL +  +  +A      
Sbjct: 689 EIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQT 748

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANF---ILKEMNKRDLKMGFKLR 316
              +    D  ++  L   L GL +  E +    +L  M  R+  + F+ R
Sbjct: 749 MLKKHWNSDEVVWTVL---LDGLLKEGETDLSLELLHVMESRNCTLNFQTR 796



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 70/163 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ +I  LC   K+ EA  ++  +   G      T+  ++    +   ++ A+ +
Sbjct: 200 PNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEM 259

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +    P+   Y+ L+   C +G L     +L++M ++ +      Y   ++  C 
Sbjct: 260 FDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCD 319

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           AGR  EA  LL +M   G      TY  ++  L R G +  A+
Sbjct: 320 AGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAI 362


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 121/277 (43%), Gaps = 4/277 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFITNTENSLSVLSDLCR 91
           P    Y+ L++    E+D +T   L ++   D   +    T N + +  +    + D  +
Sbjct: 217 PDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLK 276

Query: 92  TLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              R+ +    K    Y +LI  LC    +D+A  V + + E    +  +T++ +L    
Sbjct: 277 IWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFC 336

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R  +++E+  L  +M E + S ++ +YN L+      G +   + + + M  +   AD  
Sbjct: 337 RCGKIKESLELWRIM-EHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKT 395

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY   + G C  G V +A  +++ +   G  +    YA ++  L +     +A   V   
Sbjct: 396 TYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEM 455

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
               ++L++ +  +L   LI   R  EA+F L+EM K
Sbjct: 456 SKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGK 492



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 90/206 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY ++I  LCK K+++EA  +V  M++ G  L++   + ++  L R  R+ EA   +  M
Sbjct: 431 AYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREM 490

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    P + +YN L+   C  G     S  +K+M E     D +TY  L+ G CR  ++
Sbjct: 491 GKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKI 550

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           + A  L  + +  G       +  ++  L  +G    A+  +     R+   +   + +L
Sbjct: 551 DLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTL 610

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
                 +   N A  I   M K  L+
Sbjct: 611 MEGFFKVGDSNRATVIWGYMYKMGLQ 636



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 107/237 (45%), Gaps = 10/237 (4%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           N + + SV ++L    A +D        Y+T++G  C+  KI E+L +  IM E    ++
Sbjct: 305 NVDKAESVFNELDERKASIDV-----VTYNTMLGGFCRCGKIKESLELWRIM-EHKNSVN 358

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            ++++ ++  L    +++EA  +  +M     + D T Y   +   C  G +    GV++
Sbjct: 359 IVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQ 418

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           ++E      D   Y +++   C+  R+EEA  L++ M   G  +       ++G L+R  
Sbjct: 419 EVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDS 478

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
              +A  F+   G    +     +  L   L    +F EA+  +KEM    L+ G+K
Sbjct: 479 RLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEM----LENGWK 531



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 133/326 (40%), Gaps = 40/326 (12%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F  +G  P+  T   Y+ L+  +  +++ E  R  L+   ++       +++ + N    
Sbjct: 140 FETAGVAPNLQT---YNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAK 196

Query: 83  LSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
              L D       + ++G  P  + Y+ LI    K K    A+ + D + E       + 
Sbjct: 197 AGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVK 256

Query: 141 FHPIL-SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
            H I+ S L++  R+++   + E MK+     DL  Y+ L+   C  GN+     V  ++
Sbjct: 257 THNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNEL 316

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM-----------------------VD 236
           +E K   D  TY+ ++ G CR G+++E+  L R M                       +D
Sbjct: 317 DERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGLLENGKID 376

Query: 237 D-----------GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +           G +   +TY   +  L   GY  +A+  +         LD   + S+ 
Sbjct: 377 EATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASII 436

Query: 286 SKLIGLERFNEANFILKEMNKRDLKM 311
             L   +R  EA+ ++KEM+K  +++
Sbjct: 437 DCLCKKKRLEEASNLVKEMSKHGVEL 462



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 1/159 (0%)

Query: 98  KGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KG+   K+ Y   I  LC    +++AL V+  +   G  L    +  I+  L + KR+EE
Sbjct: 388 KGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEE 447

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L++ M +  V  +    N L+        L   S  L++M +        +Y+ L+ 
Sbjct: 448 ASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILIC 507

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           G C+AG+  EA   ++ M+++G      TY+ ++  L R
Sbjct: 508 GLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCR 546



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 69/165 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI  LCK  K  EA   V  M E G+     T+  +L  L R ++++ A  L
Sbjct: 497 PTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALEL 556

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                +  +  D+  +N L+   C  G L     V+  ME     A+  TY+ L+ G  +
Sbjct: 557 WHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFK 616

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G    A V+   M   G      +Y  +M  L      + A++F
Sbjct: 617 VGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEF 661



 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 3/138 (2%)

Query: 120 DEALRVVDIMAEGGFGLSAI--TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           D+AL V   M E  FG      +++ +L+     K+  +   L    +   V+P+L  YN
Sbjct: 95  DQALDVFKRMREI-FGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYN 153

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+   C K       G L  M +E    D  +Y  ++    +AG++++A  L   M + 
Sbjct: 154 VLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSER 213

Query: 238 GQSVLYSTYAHVMGALLR 255
           G +   + Y  ++   L+
Sbjct: 214 GVAPDVTCYNILIDGFLK 231



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 33/180 (18%), Positives = 72/180 (40%), Gaps = 1/180 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  ++ RL + + ++   R+V+++              ++    +    ++A  + + M+
Sbjct: 46  YHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMR 105

Query: 166 EI-RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           EI    P + +YN LL A+           +    E   +  + +TY+ L+  +C+    
Sbjct: 106 EIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEF 165

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           E+A   L  M  +G      +Y+ V+  L + G    A++       R +  D   +  L
Sbjct: 166 EKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNIL 225


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 109/229 (47%), Gaps = 7/229 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           EN+ S LSD+       +KG FP    Y+TLI   C+   ++EA  ++D M+  G     
Sbjct: 271 ENTKSFLSDM------EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 324

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T++ I++ L +  +   A G+++ M +I +SPD   YN LL   C   N+     +  +
Sbjct: 325 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 384

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M  + +  D  ++ AL+    + G +++A    R M + G +     Y  ++G   R G 
Sbjct: 385 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 444

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++A+K       +   LD   + ++ + L   +  +EA+ +  EM +R
Sbjct: 445 MSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTER 493



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LIG  C+   + EAL+V D M E G  L  +T++ IL+ L + K + EA  L
Sbjct: 427 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADEL 486

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V PD   +  L+  Y   GN+     + + M +  L  D  TY+ L+ G C+
Sbjct: 487 FTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 546

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
              +E+   L   M+       + +Y  ++     +G  ++A + 
Sbjct: 547 GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 591



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 121/283 (42%), Gaps = 23/283 (8%)

Query: 15  QSVLVTRSF----TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN----KRARDCC 66
           Q +  T+SF     + G FPD  T   Y+ L+NA   +  LE    L++    K  + C 
Sbjct: 268 QKIENTKSFLSDMEEKGVFPDVVT---YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 324

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-----PRKSAYDTLIGRLCKLKKIDE 121
           F    T+N I N    L       R    LD+       P  + Y+ L+   C+   + +
Sbjct: 325 F----TYNAIIN---GLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 377

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A R+ D M   G     ++F  ++ +L++   +++A      MK   ++PD   Y  L+ 
Sbjct: 378 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 437

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            +C  G ++    V  +M E+    D  TY+ ++ G C+   + EA  L   M + G   
Sbjct: 438 GFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFP 497

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            + T+  ++    + G   +AV    +   R++K D   + +L
Sbjct: 498 DFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 540



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P   +Y  LI   C +  + EA R+ D M E GF  + IT + I+    R     +A  
Sbjct: 566 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 625

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +  M    + PD   YN L+  +  + N+     ++ KME   L  D  TY+ ++ G  
Sbjct: 626 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 685

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           R GR++EA +++ +M++ G +   STY  ++  
Sbjct: 686 RQGRMQEAELIMLKMIERGVNPDRSTYTSLING 718



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 90/205 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+T++  LCK K + EA  +   M E G      TF  +++  ++   M +A  L E+M
Sbjct: 466 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 525

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  + PD+  YN L+  +C    +   + +   M   ++  +  +Y  L+ G C  G V
Sbjct: 526 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCV 585

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EAF L   MV+ G      T   ++    R G   +A +F+     + I  D   + +L
Sbjct: 586 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 645

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            +  I  E  + A  ++ +M    L
Sbjct: 646 INGFIKEENMDRAFALVNKMENSGL 670



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + +I  LCK +KI+     +  M E G     +T++ +++   R   +EEA+ LM+ M  
Sbjct: 258 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG 317

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + P +  YN ++   C  G      GVL +M +  +  D  TY+ L++  CR   + +
Sbjct: 318 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 377

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
           A  +   M   G      +++ ++G L + G   QA+K+      RD+K
Sbjct: 378 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYF-----RDMK 421



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 73/143 (51%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           +A ++L+G L K+  +D A  +   +   G  ++  T + +++ L + +++E     +  
Sbjct: 220 NACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSD 279

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+E  V PD+  YN L+ AYC +G L     ++  M  + L     TY+A++ G C+ G+
Sbjct: 280 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 339

Query: 224 VEEAFVLLRRMVDDGQSVLYSTY 246
              A  +L  M+  G S   +TY
Sbjct: 340 YLRAKGVLDEMLKIGMSPDTATY 362



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 70/158 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +D L+    + +K+ E      ++   G  +S    + +L  L +   ++ AW + + +
Sbjct: 186 VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 245

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V  ++   N ++ A C    +  T   L  MEE+ +  D  TY+ L+   CR G +
Sbjct: 246 VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 305

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           EEAF L+  M   G      TY  ++  L + G Y +A
Sbjct: 306 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 343



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 7/151 (4%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    + TLI    K   +++A+ + ++M +       +T++ ++    +G  ME+   
Sbjct: 496 FPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNE 555

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M   R+ P+  +Y  L+  YC  G ++    +  +M E+   A   T + +V G C
Sbjct: 556 LWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC 615

Query: 220 RAGRVEEA-----FVLLRRMVDDGQSVLYST 245
           RAG   +A      +LL+ +V DG  + Y+T
Sbjct: 616 RAGNAVKADEFLSNMLLKGIVPDG--ITYNT 644



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 85/207 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   CK  ++++   + + M       + I++  +++       + EA+ L
Sbjct: 532 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 591

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E      +   N ++  YC  GN       L  M  + +  D  TY+ L+ G  +
Sbjct: 592 WDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK 651

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              ++ AF L+ +M + G      TY  ++    R G   +A   ++    R +  D   
Sbjct: 652 EENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRST 711

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL +  +      EA  +  EM +R
Sbjct: 712 YTSLINGHVTQNNLKEAFRVHDEMLQR 738


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 4/228 (1%)

Query: 81  NSLSVLSDLCRTLARLDK----GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           NSL     L +  + L K      P    Y+T++    K  +   ALR++D M + G   
Sbjct: 238 NSLCTQGKLSKAESMLQKMKNCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEA 297

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
              T++ ++  L + KR   A+ L++ M+E+ ++PD  +YN L+  +  +G +     + 
Sbjct: 298 DLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIF 357

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            +M  + L     TY AL+ G CR GR +EA  +L  M   G      TY+ ++    + 
Sbjct: 358 NQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKH 417

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                A+  +     R I ++  ++  L      L   ++A  ILK M
Sbjct: 418 SKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCM 465



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 19/221 (8%)

Query: 56  YLLNKRARD-------CCFNTANTFNFITNTEN-SLSVLSDLCRTLARLDKGFPRKSAYD 107
           YLL KR R+       C +NT     F     N ++ + + + R   +     P  + Y 
Sbjct: 319 YLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLK-----PSVATYT 373

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
            LI   C+  + DEA RV+  M   G   S +T+  +L+   +  ++  A  L++ ++  
Sbjct: 374 ALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSR 433

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            +S + T Y  L+  +C  G ++    +LK M  + +  D  TY AL+ G C+ G + E 
Sbjct: 434 SISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHET 493

Query: 228 FVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKF 265
             +L RM   G    +VLY+T   ++    + G+  +A+K+
Sbjct: 494 KEILSRMQKSGVLPNNVLYTT---LVFYFCKAGHAKEALKY 531



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 109/229 (47%), Gaps = 7/229 (3%)

Query: 84  SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           ++ S L RT++R D       + D L+    K  K+ +A   +  M E GF  S  + + 
Sbjct: 143 AIFSSLLRTISRCDP--TNLFSVDLLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNN 200

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           IL+ L    + E  W  ++   + +   D+T  N +L + C +G L+    +L+KM+  +
Sbjct: 201 ILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCR 260

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           L  +A TY+ ++    + GR + A  +L  M  +G      TY  ++  L +L   A+A 
Sbjct: 261 L-PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARA- 318

Query: 264 KFVMVCGGRDIKL--DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            ++++   R++ L  D   + +L     G  + N A +I  +M ++ LK
Sbjct: 319 -YLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLK 366



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKR 153
           L+KG  P   AY  L+  L    ++  A  +  +I+ + G     I ++ +++   +G +
Sbjct: 711 LEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQ 770

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           + E   LM  M E  V P   +YN L+  Y  KG L+ T  + + M +E +  D  TY  
Sbjct: 771 INEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRL 830

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDG 238
           L+ G C  G +E A   L +MV +G
Sbjct: 831 LIFGLCEYGLIEIAVKFLEKMVLEG 855



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 125/304 (41%), Gaps = 12/304 (3%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLV---NAAGHERDLETVRYLLNKRARDCCFN 68
           +I ++  +     KSG  P+   +  Y  LV     AGH +  E ++Y ++        N
Sbjct: 489 MIHETKEILSRMQKSGVLPN---NVLYTTLVFYFCKAGHAK--EALKYFVDIYRSGLVAN 543

Query: 69  TA--NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126
           +   N        E  ++      + ++R+   F   S ++ +I   C+   + EA  V 
Sbjct: 544 SVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVAS-FNCIIDSYCQRGNVLEAFSVY 602

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           D M   G+     T+  +L  L +G  + +A   M  + E   + D    N LL   C  
Sbjct: 603 DNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKH 662

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G L     + +KM    +  D  TY  L+ G C+ G+V  A +LL+ M++ G       Y
Sbjct: 663 GTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAY 722

Query: 247 AHVMGALLRLGYY-AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
             ++  L+  G   A +  F  +     +  D   + S+ +  +   + NE   +++ M+
Sbjct: 723 TCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMH 782

Query: 306 KRDL 309
           + ++
Sbjct: 783 ENEV 786



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 7/218 (3%)

Query: 52  ETVRYLLNKRARDCCFN--TANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTL 109
           E + YLL K    C  +  T NT         +L    DLC  +   +   P    Y  L
Sbjct: 635 EFMVYLLEKA---CAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNI-LPDTYTYTIL 690

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS-VLTRGKRMEEAWGLMEVMKEIR 168
           +   CK  K+  AL ++ +M E G     I +  +L+ ++  G+    ++   E++ +  
Sbjct: 691 LDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEG 750

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           +  D  AYN ++  Y   G +     +++ M E ++   + +Y+ L+ G  + G++    
Sbjct: 751 LYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTL 810

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            L R MV +G      TY  ++  L   G    AVKF+
Sbjct: 811 YLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFL 848



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 72/148 (48%), Gaps = 3/148 (2%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P + A  +++  LCK  K++EA+ V   +   G   +  TF  ++  L +  ++++A+ L
Sbjct: 909  PSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHL 968

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             ++M+   +  D+  YN L+T  C K  +     + ++M+ + L  +  TY  L      
Sbjct: 969  KQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYA 1028

Query: 221  AGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
             G +++   LL+ + D G   +  +Y H
Sbjct: 1029 TGTMQDGEKLLKDIEDRG---IVPSYKH 1053



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/242 (19%), Positives = 101/242 (41%), Gaps = 35/242 (14%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           ++ Y  LI   C+L ++ +A +++  M   G     IT+  +++ + +   + E   ++ 
Sbjct: 439 RTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILS 498

Query: 163 VMKEIRVSPDLTAYNYLLTAYC---------------FKGNLTATS-------------G 194
            M++  V P+   Y  L+  +C               ++  L A S             G
Sbjct: 499 RMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREG 558

Query: 195 VLKKMEE-------EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           ++ + E+        K+  D  +++ ++   C+ G V EAF +   MV  G      TY 
Sbjct: 559 MIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYG 618

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++  L + G+  QA +F++    +   +D +   +L   +      +EA  + ++M  R
Sbjct: 619 SLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTR 678

Query: 308 DL 309
           ++
Sbjct: 679 NI 680



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 16/178 (8%)

Query: 96   LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA-----EGGFGL-----------SAI 139
            L+  FP   A+D LI    +  K+  AL++   M      +G F L           S +
Sbjct: 853  LEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEV 912

Query: 140  TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
                I+  L +  ++EEA  +   +    + P +  +  L+   C +  +     + + M
Sbjct: 913  AESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLM 972

Query: 200  EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            E   L  D  TY+ L+ G C    + +A  L   M   G     +TY  + GA+   G
Sbjct: 973  ESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATG 1030



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 49/263 (18%), Positives = 109/263 (41%), Gaps = 23/263 (8%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR-ARDCCFNTA 70
           ++P  +L+     K G  PD   +  Y  L+N   +E  ++   Y+  +   ++  +   
Sbjct: 700 VVPALILLQMMLEK-GLVPD---TIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADC 755

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDI 128
             +N + N       ++++ R +  + +   +P  ++Y+ L+    K  ++   L +   
Sbjct: 756 IAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRD 815

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M + G     +T+  ++  L     +E A   +E M    V PD  A++ L+ A+  K  
Sbjct: 816 MVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSK 875

Query: 189 LTATSGVLKKMEEE-------KLGADARTY---------DALVLGACRAGRVEEAFVLLR 232
           ++    +   M+         +L  D +            ++V G C+ G+VEEA ++  
Sbjct: 876 MSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFS 935

Query: 233 RMVDDGQSVLYSTYAHVMGALLR 255
            ++  G     +T+  +M  L +
Sbjct: 936 SIMRAGMVPTIATFTTLMHGLCK 958


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 6/211 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC    +DEA +V++ M   GF  +A+T++ +++   + KR+++A  +
Sbjct: 281 PNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKI 340

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + VM    V  D   YN L   YC  G   A   VL +M    +  D  T++ L+ G C 
Sbjct: 341 LCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCE 400

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E+A V L  +      V   TY  ++  + +      A         + +  D   
Sbjct: 401 HGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVIT 460

Query: 281 FGSLGSKLIGLER---FNEANFILKEMNKRD 308
           + ++   +IGL R   + EA+ + ++M K D
Sbjct: 461 YTTM---MIGLRRKRLWLEAHELYRKMKKDD 488



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 78/163 (47%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TL+   CK K++D+A++++ +M+  G      T++ +     +  +   A  
Sbjct: 315 FPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEK 374

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M    V PD+  +N LL   C  G +      L+ +++ +      TY+ ++ G C
Sbjct: 375 VLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMC 434

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +A +VE+A+ L   +   G S    TY  +M  L R   + +A
Sbjct: 435 KANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEA 477



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 12/240 (5%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT-------ENSLS 84
           EP+   +  LVN   H   ++    L+++            +N I ++       + +L 
Sbjct: 140 EPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALD 199

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           VL+ + +   R     P    Y++LI RL    K   + R++  M   G     ITF  +
Sbjct: 200 VLNHMEKMGIR-----PDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAM 254

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           + V  +  ++ EA    + M +  V P++  YN L+   C  G L     VL  M  +  
Sbjct: 255 IDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGF 314

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +A TY+ LV G C++ RV++A  +L  M  DG      TY  +     + G +  A K
Sbjct: 315 FPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEK 374



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 83/192 (43%), Gaps = 28/192 (14%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           ++ TLI   C+  ++  AL  +  M + GF  S +TF  +++      R++EA  L++ +
Sbjct: 110 SFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQI 169

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
             +   P++  YN ++ + C    +     VL  ME+  +  D  TY++L+     +G+ 
Sbjct: 170 VGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGK- 228

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
                             +   A ++  ++R+G +   + F  +          ++FG  
Sbjct: 229 ------------------WGVSARILSDMMRMGIHPDVITFSAM---------IDVFGKE 261

Query: 285 GSKLIGLERFNE 296
           G  L   ++++E
Sbjct: 262 GQLLEAKKQYDE 273



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 3/131 (2%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K ++AL +   MAE     S + F  +L  + + K+ E    L   ++ + +S DL +++
Sbjct: 53  KFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFS 112

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C    L+     L KM +        T+ +LV G C   R++EA  L+ ++V  
Sbjct: 113 TLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGL 172

Query: 238 G---QSVLYST 245
           G     V+Y+T
Sbjct: 173 GYEPNVVIYNT 183


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 5/228 (2%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           ++LS+L D+ R   +     P    Y  L+  +CK    ++A+ V+D M   G   + +T
Sbjct: 160 DALSLLDDMLRRGCQ-----PNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVT 214

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ I++ + R  R+++A  L+  +      PD  +Y  LL   C          +  +M 
Sbjct: 215 YNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMM 274

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E+    +  T+D L+   CR G VE A  +L++M +   +   +    V+ ++ + G   
Sbjct: 275 EKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVD 334

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
            A KF+   G      DT  + ++   L   ER+N+A  +LKEM + +
Sbjct: 335 DAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNN 382



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 122/290 (42%), Gaps = 29/290 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ ++N    E  ++  R LLN+     C    +T ++ T       +L  LC +
Sbjct: 210 PNIVTYNVIINGMCREGRVDDARDLLNRLFSYGC--QPDTVSYTT-------LLKGLCAS 260

Query: 93  LARLD------------KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             R D               P +  +D LI   C+   ++ A++V+  M E     +   
Sbjct: 261 -KRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTL 319

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
            + +++ + +  R+++A+  +  M     +PD  +Y  +L   C          +LK+M 
Sbjct: 320 CNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMV 379

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
                 +  T++  +   C+ G +E+A +L+ +M + G +V   TY  ++      G+  
Sbjct: 380 RNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHID 439

Query: 261 QAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
            A++    M C     K +T  + +L + L   ER + A  ++ EM  RD
Sbjct: 440 SALELFRSMPC-----KPNTITYTTLLTGLCNAERLDAAAELVAEMLHRD 484



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY+TL+   C+   +D A R++  M        A T+ P++ VL    R+ +A  L++ M
Sbjct: 112 AYNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDM 168

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P++  Y  LL A C          VL +M  +    +  TY+ ++ G CR GRV
Sbjct: 169 LRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRV 228

Query: 225 EEAFVLLRRMVDDG---QSVLYST 245
           ++A  LL R+   G    +V Y+T
Sbjct: 229 DDARDLLNRLFSYGCQPDTVSYTT 252



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 4/238 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLC 90
           +P    Y  L+ A       E    +L++ RA+ C  N   T+N I N       + D  
Sbjct: 174 QPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIV-TYNVIINGMCREGRVDDAR 232

Query: 91  RTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
             L RL      P   +Y TL+  LC  K+ D+   +   M E     + +TF  ++   
Sbjct: 233 DLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFF 292

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            RG  +E A  +++ M E   + + T  N ++ + C +G +      L  M       D 
Sbjct: 293 CRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDT 352

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            +Y  ++ G CRA R  +A  LL+ MV +       T+   +  L + G   QA+  +
Sbjct: 353 ISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLI 410



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 116/266 (43%), Gaps = 9/266 (3%)

Query: 7   LPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCC 66
           L  K LI Q++++     + G      T   Y+ LVN    +  +++   L   R+  C 
Sbjct: 397 LCQKGLIEQAIMLIEQMQEHGCTVGVVT---YNALVNGFCVQGHIDSALELF--RSMPCK 451

Query: 67  FNTANTFNFITNTENS--LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALR 124
            NT      +T   N+  L   ++L   +   D   P    ++ L+   C+   +DEA+ 
Sbjct: 452 PNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCP-PNVVTFNVLVNFFCQKGFLDEAIE 510

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +V+ M E G   + IT++ +   +T+    E+A  L+  +    VSPD+  ++ ++    
Sbjct: 511 LVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILS 570

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            +  +     +    ++  +   A  Y+ ++LG C+   ++ A   L  MV +G     S
Sbjct: 571 KEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNES 630

Query: 245 TYAHVMGALLRLGYYAQAVKFV-MVC 269
           TY  ++  L R G   +A   + M+C
Sbjct: 631 TYIILIEGLAREGLLKEAQDLLSMLC 656



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 4/214 (1%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR-ARDCCFNTANTFNFITNTENSLSVL 86
           + P +P +  Y  L+    +   L+    L+ +   RDC  N   TFN + N       L
Sbjct: 447 SMPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVV-TFNVLVNFFCQKGFL 505

Query: 87  SDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +    + ++ + G  P    Y+TL   + K    ++AL ++  +   G     ITF  I
Sbjct: 506 DEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSI 565

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           + +L++  R+EEA  +  + ++I + P    YN +L   C +  +      L  M     
Sbjct: 566 IGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGC 625

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             +  TY  L+ G  R G ++EA  LL  +   G
Sbjct: 626 MPNESTYIILIEGLAREGLLKEAQDLLSMLCSRG 659



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 3/200 (1%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           LI  LC+  +  +A RV+      G  +    ++ +++   R   ++ A  L+  M    
Sbjct: 81  LIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMP--- 137

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V+PD   Y  L+   C +G +     +L  M       +  TY  L+   C+    E+A 
Sbjct: 138 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAM 197

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            +L  M   G +    TY  ++  + R G    A   +        + DT  + +L   L
Sbjct: 198 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGL 257

Query: 289 IGLERFNEANFILKEMNKRD 308
              +R+++   +  EM +++
Sbjct: 258 CASKRWDDVEELFAEMMEKN 277


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y  LI  LC+  +IDEA+ V+ +M E        ++ P++S L +  R++ A G+
Sbjct: 310 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 369

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M+ M      PD+  YN +L A C  GN      +  K+       +  +Y+ ++     
Sbjct: 370 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 429

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            G    A  ++  M+  G      TY  ++  L R G   +A+
Sbjct: 430 CGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAI 472



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 94/199 (47%), Gaps = 20/199 (10%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           ++S LCR   R+D+              P   +YD LI  LCK  ++D A+ ++D M   
Sbjct: 318 LISSLCR-FGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISN 376

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G     + ++ IL+ L +     +A  +   ++ +   P++++YN +++A    G+ +  
Sbjct: 377 GCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRA 436

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            G++  M  + +  D  TY++L+   CR G VEEA  LL  M   G      +Y  V+  
Sbjct: 437 LGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLG 496

Query: 253 LLR-------LGYYAQAVK 264
           L +       +G +A+ ++
Sbjct: 497 LCKVRRIDDAIGMFAEMIE 515



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 98/209 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ +I   CK+ +I+ A +V++ M   GF    +T++ ++  L   +++  A  +
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ +      P +  Y  L+ A   +G +     +L++M    L  D  TY+A++ G C+
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 254

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G VE A  L+  +   G      +Y  ++ A L  G + +  K V     R  + +   
Sbjct: 255 EGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 314

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L S L    R +EA  +LK M +++L
Sbjct: 315 YSILISSLCRFGRIDEAISVLKVMIEKEL 343



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ L+       K DE  ++V  M   G   + +T+  ++S L R  R++EA  +
Sbjct: 275 PDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISV 334

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++VM E  ++PD  +Y+ L++A C +G L    G++  M       D   Y+ ++   C+
Sbjct: 335 LKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCK 394

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G   +A  +  ++   G     S+Y  ++ AL   G  ++A+  V     + +  D   
Sbjct: 395 NGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEIT 454

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + SL S L       EA  +L +M +   +
Sbjct: 455 YNSLISCLCRDGLVEEAIGLLDDMEQSGFR 484



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 81/175 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T++  LCK    ++AL + + +   G   +  +++ ++S L        A G
Sbjct: 379 LPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALG 438

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M    V PD   YN L++  C  G +    G+L  ME+        +Y+ ++LG C
Sbjct: 439 MVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLC 498

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +  R+++A  +   M++ G     +TY  ++  +   G+  +A++       RD+
Sbjct: 499 KVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDV 553



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 1/208 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P    Y+ +IG LC  +K+  AL+V+D +       + IT+  ++        + E
Sbjct: 166 RGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINE 225

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L+E M    + PD+  YN ++   C +G +   + ++  +  +    D  +Y+ L+ 
Sbjct: 226 AMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLR 285

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
                G+ +E   L+  M   G      TY+ ++ +L R G   +A+  + V   +++  
Sbjct: 286 AFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTP 345

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           DT  +  L S L    R + A  I+  M
Sbjct: 346 DTYSYDPLISALCKEGRLDLAIGIMDYM 373



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 12/205 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSV 85
           P +  YD L++A   E  L+    +++    + C      +N I        N   +L +
Sbjct: 345 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 404

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
            + L     R     P  S+Y+T+I  L        AL +V  M   G     IT++ ++
Sbjct: 405 FNKL-----RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLI 459

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           S L R   +EEA GL++ M++    P + +YN +L   C    +    G+  +M E+   
Sbjct: 460 SCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCR 519

Query: 206 ADARTYDALVLGACRAGRVEEAFVL 230
            +  TY  L+ G   AG   EA  L
Sbjct: 520 PNETTYILLIEGIGFAGWRTEAMEL 544



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           LD   P    Y  LI        I+EA+++++ M   G      T++ I+  + +   +E
Sbjct: 200 LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVE 259

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L+  +      PD+ +YN LL A+  +G       ++ +M       +  TY  L+
Sbjct: 260 RAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILI 319

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              CR GR++EA  +L+ M++   +    +Y  ++ AL + G
Sbjct: 320 SSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEG 361



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 1/165 (0%)

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
           R++    L+ R CK  K +E+L  ++ +   G+    I    ++      K +E+A  +M
Sbjct: 67  RETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM 126

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           E++ E    PD+ AYN +++ +C    + A + VL +M+      D  TY+ ++   C  
Sbjct: 127 EIL-ESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR 185

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            ++  A  +L +++ D       TY  ++ A +  G   +A+K +
Sbjct: 186 RKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLL 230


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 6/202 (2%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL- 96
           Y  L+++      L+T  + L K        T   +N + N    L  LS        + 
Sbjct: 404 YSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMI 463

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKG  P   +Y +LI   C   K+ EA R+   M   G   +  TF  ++S L R  RM 
Sbjct: 464 DKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMT 523

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A+ L + M E  + P+   YN ++  +C +GN      +L +M ++ L  D  TY  L+
Sbjct: 524 DAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLI 583

Query: 216 LGACRAGRVEEAFVLLRRMVDD 237
              C  GRV EA    ++ +DD
Sbjct: 584 SSLCSTGRVCEA----KKFIDD 601



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 95/205 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TL+  LCK+++ +    V+D M E GF  +      ++  L R  ++ +A+ L+  +
Sbjct: 298 TYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRV 357

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K++   P L  YN L+ + C  G       + K+M E+ L A+  TY  L+   CR G++
Sbjct: 358 KKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKL 417

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           + A   L +M+  G  +    Y  ++    +LG  + AV F      + +K     + SL
Sbjct: 418 DTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSL 477

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            S      + +EA  +  EM  + +
Sbjct: 478 ISGYCNKGKLHEAFRLYHEMTGKGI 502



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 94/206 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y++LI   CKL  +  A+   D M + G   + +++  ++S      ++ EA+ L   M 
Sbjct: 439 YNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMT 498

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++P+   +  L++A      +T    +  +M E+ +  +  TY+ ++ G C+ G   
Sbjct: 499 GKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTV 558

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +AF LL +MV  G      TY  ++ +L   G   +A KF+        KL+   + +L 
Sbjct: 559 KAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALL 618

Query: 286 SKLIGLERFNEANFILKEMNKRDLKM 311
                  R  +A  + +EM KR + M
Sbjct: 619 HGYCKEGRLRDALGVCREMVKRGVDM 644



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
             P    Y+ LI  LCK  K DEA  +   M E G   + +T+  ++    R  +++ A 
Sbjct: 362 AMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAI 421

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
             +  M    +   +  YN L+  +C  GNL+A      +M ++ L     +Y +L+ G 
Sbjct: 422 HFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGY 481

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           C  G++ EAF L   M   G +    T+  ++ AL R
Sbjct: 482 CNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFR 518



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC   ++ EA + +D +    F L+ + +  +L    +  R+ +A G+
Sbjct: 574 PDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGV 633

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V  DL  Y  L+     + + +A  G+LK M +++L  D   Y +++ G  +
Sbjct: 634 CREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSK 693

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AG V++AF +   M+D+G +    TY  ++  L + G   +A
Sbjct: 694 AGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKA 735



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 98/215 (45%), Gaps = 1/215 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++ GF P ++A  +L+  L +  K+ +A  +V+ + + G   S   ++ +++ L +  + 
Sbjct: 323 IELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKF 382

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  L + M E  +  +   Y+ L+ ++C +G L      L KM    +      Y++L
Sbjct: 383 DEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSL 442

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ G +  A      M+D G      +Y  ++      G   +A +      G+ I
Sbjct: 443 INGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGI 502

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             +T  F +L S L    R  +A  +  EM ++++
Sbjct: 503 APNTYTFTTLISALFRANRMTDAFRLFDEMLEQNM 537



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 1/178 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y ++I    K   + +A  + DIM + G   + +T+  +++ L +   M++A  L
Sbjct: 679 PDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELL 738

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M     +P+   Y   L     +G++     +   M +  L A+  +Y+ LV G C+
Sbjct: 739 WKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLL-ANTVSYNILVRGFCK 797

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            GRVEEA  LL  M+D+       TY+ ++    R G    A++F      + +K DT
Sbjct: 798 LGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDT 855



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 74/161 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  L+   CK  ++ +AL V   M + G  +  + +  ++    + +     +GL++ M
Sbjct: 613 CYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNM 672

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            + R+ PD   Y  ++  Y   G++    G+   M +E    +  TY  L+   C+AG +
Sbjct: 673 HDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLM 732

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           ++A +L + M+    +  + TY   +  L R G   +AV+ 
Sbjct: 733 DKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQL 773



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y   +  L +   +++A+++ + M +G    + ++++ ++    +  R+EEA  L
Sbjct: 749 PNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLA-NTVSYNILVRGFCKLGRVEEATKL 807

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  + PD   Y+ ++   C +GNL         M  + L  D   Y+ L+ G C 
Sbjct: 808 LDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCI 867

Query: 221 AGRVEEAFVL----LRRMVDDGQSVLYSTYAH 248
           AG + +AF L    +RR V   Q+  + + +H
Sbjct: 868 AGELGKAFELRDDMIRRGVKPNQAT-HKSLSH 898



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 53/116 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ L+   CKL +++EA +++D M +       IT+  I+    R   ++ A    + M
Sbjct: 787 SYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTM 846

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
               + PD  AYN+L+   C  G L     +   M    +  +  T+ +L  GA R
Sbjct: 847 LNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHGASR 902



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/157 (19%), Positives = 71/157 (45%), Gaps = 2/157 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           F     +D LI    + K++ +++ +  +M +        T   +L+ L + +R++    
Sbjct: 155 FISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLV 214

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   +  + + PD+  Y  ++ ++C   N      ++++ME   L  +   Y+ L+ G C
Sbjct: 215 LFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDL--NVVVYNVLIHGLC 272

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           +  RV EA  +   ++  G +    TY  ++  L ++
Sbjct: 273 KNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKV 309



 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 2/162 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I   C+LK   +A  ++  M      L+ + ++ ++  L + KR+ EA  +
Sbjct: 226 PDIYIYVAVIRSFCELKNFAKAKEMIQRMESSD--LNVVVYNVLIHGLCKNKRVWEAVEI 283

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              + +  ++     Y  L+   C        +GV+ +M E           +LV G  R
Sbjct: 284 KNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRR 343

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G+V +AF L+ R+   G       Y  ++ +L + G + +A
Sbjct: 344 KGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEA 385



 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 112/301 (37%), Gaps = 31/301 (10%)

Query: 14  PQSVLVTRSFTKSGAFPDEPTSAYYD-----DLVNAAGHERDLETVRYLLNKRARDCCFN 68
           P S L+     + G  P E   A  D     D +++ G   DL    Y+  KR     F+
Sbjct: 123 PASSLLQTLLLRGGLDPREVFEALLDCFEKCDFISSLGF--DLLIQSYVQEKRM----FD 176

Query: 69  TANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           +   F  +   E     L    RTL  +  G             L K++++D  L +   
Sbjct: 177 SVLIFRLMRQCE-----LMPQVRTLGEVLNG-------------LAKIRRVDMVLVLFGE 218

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           +   G       +  ++      K   +A  +++ M+   +  ++  YN L+   C    
Sbjct: 219 ILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDL--NVVVYNVLIHGLCKNKR 276

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +     +   + ++ L A   TY  LVLG C+    E    ++  M++ G     +  + 
Sbjct: 277 VWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSS 336

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++  L R G    A   V             ++ +L + L    +F+EA  + KEM ++ 
Sbjct: 337 LVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKG 396

Query: 309 L 309
           L
Sbjct: 397 L 397


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 104/236 (44%), Gaps = 2/236 (0%)

Query: 32   EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
            +P   ++  L++    E +L   R L  +  R        T+N + N       L D   
Sbjct: 776  DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKY 835

Query: 92   TL-ARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                 + KG FP    Y+TLI   CK K++++ +++   M   G    A T++ ++    
Sbjct: 836  MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 895

Query: 150  RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
            +  ++  A  +   M +  VSPD+  YN LL   C  G +     +++ +++ ++  D  
Sbjct: 896  QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 955

Query: 210  TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            TY+ ++ G CR  +++EA+ L R +   G       Y  ++  L R G   +A K 
Sbjct: 956  TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKL 1011



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 80/158 (50%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           ++  LI   C+  ++  AL V+  M + G+  S +TF  +L       R+ +A+ L+ +M
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    P++  YN L+   C  G L     +L +ME++ LGAD  TY+ L+ G C +GR 
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRW 227

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            +A  +LR M+    +    T+  ++   ++ G   +A
Sbjct: 228 SDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEA 265



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 22/218 (10%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
            P    Y+ L+N       L   +Y+ +      CF    T+N         ++++  C++
Sbjct: 812  PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYN---------TLITGFCKS 862

Query: 93   LARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
              R++ G                  Y+TLI   C+  K++ A +V + M + G     +T
Sbjct: 863  -KRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVT 921

Query: 141  FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
            ++ +L  L    ++E+A  ++E +++  +  D+  YN ++   C    L     + + + 
Sbjct: 922  YNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLT 981

Query: 201  EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             + +  DA  Y  ++ G CR G   EA  L RRM +DG
Sbjct: 982  RKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 1019



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 77/167 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK + +DE +++   M+  GF     T++ ++    +  ++  A  
Sbjct: 313 FPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALD 372

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +   M   RV+PD+  +  LL   C  G + +       M E +       Y+ ++ G C
Sbjct: 373 IFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLC 432

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A +VE+A+ L  R+  +G      TY  ++  L + G   +A + +
Sbjct: 433 KADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELI 479



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 108/253 (42%), Gaps = 19/253 (7%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P  V  TR  T +       T  Y+   +   G   DL +   L++      CF   + 
Sbjct: 68  LPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIH------CFCRCSR 121

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
            +F      +LSVL  +      +  G+ P    + +L+   C + +I +A  +V +M +
Sbjct: 122 LSF------ALSVLGKM------MKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVK 169

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G+  + + ++ ++  L +   +  A  L+  M++  +  D+  YN LLT  C+ G  + 
Sbjct: 170 SGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSD 229

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
            + +L+ M +  +  D  T+ AL+    + G ++EA  L + M+         TY  ++ 
Sbjct: 230 AARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289

Query: 252 ALLRLGYYAQAVK 264
            L   G    A K
Sbjct: 290 GLCMHGRLYDAKK 302



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK  +++ AL +++ M + G G   +T++ +L+ L    R  +A  +
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARM 233

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  ++PD+  +  L+  +  +GNL     + K+M +  +  +  TY++++ G C 
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCM 293

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGG 271
            GR+ +A      M   G      TY  ++    +     + +K    M C G
Sbjct: 294 HGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P    Y++LI   C    + +A  + D+M   G     +T++ +++   + KR+E+   L
Sbjct: 812  PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 871

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
               M    +  D   YN L+  YC  G L     V  +M +  +  D  TY+ L+   C 
Sbjct: 872  FCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCN 931

Query: 221  AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             G++E+A V++  +      V   TY  ++  L R     +A         + +K D   
Sbjct: 932  NGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIA 991

Query: 281  FGSLGSKLI--GLERFNEANFILKEMNKRDLKMGFK------LRDYY 319
            + ++ S L   GL+R  EA+ + + M K D  M  +      LRD+Y
Sbjct: 992  YITMISGLCRKGLQR--EADKLCRRM-KEDGFMPSERIYDETLRDHY 1035



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 1/141 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P    Y+T+I  LCK + ++ AL V   M + G    A+T++ ++S L+   R  +A
Sbjct: 704 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 763

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M + ++ P++  +  L+  +  +GNL     + K+M    +  +  TY++L+ G
Sbjct: 764 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 823

Query: 218 ACRAGRVEEAFVLLRRMVDDG 238
            C  G + +A  +   MV  G
Sbjct: 824 FCIHGCLGDAKYMFDLMVSKG 844



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 68/153 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TL+  LC   +  +A R++  M +       +TF  ++ V  +   ++EA  L + M
Sbjct: 213 TYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEM 272

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V P+   YN ++   C  G L         M  +    +  TY+ L+ G C+   V
Sbjct: 273 IQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMV 332

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +E   L +RM  +G +    TY  ++    ++G
Sbjct: 333 DEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVG 365



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 117/283 (41%), Gaps = 8/283 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLET---VRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           P    Y+ ++N     RDL     V Y + K+       T NT   I+   NS    +D 
Sbjct: 707 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTL--ISGLSNS-GRWTDA 763

Query: 90  CRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            R L  + K    P    +  LI    K   + EA  +   M       +  T++ +++ 
Sbjct: 764 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 823

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
                 + +A  + ++M      PD+  YN L+T +C    +     +  +M  + L  D
Sbjct: 824 FCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 883

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A TY+ L+ G C+AG++  A  +  RMVD G S    TY  ++  L   G   +A+  V 
Sbjct: 884 AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVE 943

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                ++ +D   +  +   L   ++  EA  + + + ++ +K
Sbjct: 944 DLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVK 986



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           ++  LI   C+  ++  AL ++  M + GF  S +T   +L+   +G R +EA  L++ M
Sbjct: 641 SFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM 700

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P++  YN ++   C   +L     V   ME++ + ADA TY+ L+ G   +GR 
Sbjct: 701 DGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRW 760

Query: 225 EEAFVLLRRMV 235
            +A  LLR MV
Sbjct: 761 TDAARLLRDMV 771



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 77/174 (44%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S + F  +L+     +R E      + M+   +S DL ++  L+  +C    L+    VL
Sbjct: 70  SIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVL 129

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            KM +        T+ +L+ G C   R+ +AF L+  MV  G       Y  ++  L + 
Sbjct: 130 GKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKN 189

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           G    A++ +     + +  D   + +L + L    R+++A  +L++M KR + 
Sbjct: 190 GELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSIN 243



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/207 (19%), Positives = 77/207 (37%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    +  L+     L++ +  +     M   G      +F  ++    R  R+  A
Sbjct: 66  QPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFA 125

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++  M ++   P +  +  LL  +C    +     ++  M +     +   Y+ L+ G
Sbjct: 126 LSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDG 185

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+ G +  A  LL  M   G      TY  ++  L   G ++ A + +     R I  D
Sbjct: 186 LCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPD 245

Query: 278 TELFGSLGSKLIGLERFNEANFILKEM 304
              F +L    +     +EA  + KEM
Sbjct: 246 VVTFTALIDVFVKQGNLDEAQELYKEM 272



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P      +L+   C+  +  EA+ +VD M   GF  + + ++ +++ L + + +  A
Sbjct: 669 GFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNA 728

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             +   M++  +  D   YN L++     G  T  + +L+ M + K+  +   + AL+  
Sbjct: 729 LEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDT 788

Query: 218 ACRAGRVEEAFVLLRRMV 235
             + G + EA  L + M+
Sbjct: 789 FVKEGNLLEARNLYKEMI 806



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 83/192 (43%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K D+A  +   M +     S + F  +L+V+ +  + +    L   M+ + +S DL ++ 
Sbjct: 584 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 643

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C    L+    +L KM +        T  +L+ G C+  R +EA  L+  M   
Sbjct: 644 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 703

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G       Y  V+  L +      A++       + I+ D   + +L S L    R+ +A
Sbjct: 704 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 763

Query: 298 NFILKEMNKRDL 309
             +L++M KR +
Sbjct: 764 ARLLRDMVKRKI 775


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 117/259 (45%), Gaps = 10/259 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    ++ L++  G  R  E    +L +     C  +  T+N + +      +L +   
Sbjct: 287 EPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALE 346

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL- 148
               ++ +G  P    Y TLI  L ++ KID AL     M   G   +  T++ ++ +  
Sbjct: 347 LKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHG 406

Query: 149 TRGKRMEEAWGLMEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            RGK  E    +M V  ++R +   PD+  +N LL+ +   G  +  SGV K+M++    
Sbjct: 407 VRGKFTE----MMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYI 462

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  TY +L+    R G  ++A  + +RM++ G     STY  V+ AL R G + QA K 
Sbjct: 463 PERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKL 522

Query: 266 VMVCGGRDIKLDTELFGSL 284
                 RD K D   + SL
Sbjct: 523 FAEMVDRDCKPDELSYSSL 541



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 6/152 (3%)

Query: 106 YDTLIGRLCKLKKID-EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           Y+TLI   C+ + +  EA +V D M   GF    +TF+ +L V  + ++ EEA G+++ M
Sbjct: 258 YNTLIS-CCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRM 316

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +    +P +  YN L++AY   G L     + ++ME   +  D  TY  L+ G  R G++
Sbjct: 317 ENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKI 376

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           + A      MV +G S    TY     AL++L
Sbjct: 377 DAALATYSEMVRNGCSPNLCTY----NALIKL 404



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 7/208 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW-- 158
           P  SAY  L+    +  +  +A+ V   M +GG   + +T++ +    ++   M   W  
Sbjct: 182 PDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSK---MSVPWKE 238

Query: 159 --GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
              L++ MKE  +  D   YN L++    +G     + V  +M+      D  T+++L+ 
Sbjct: 239 VVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLD 298

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
              +A + EEA  +L+RM + G +    TY  ++ A ++ G   +A++       R +K 
Sbjct: 299 VYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKP 358

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           D   + +L S L  + + + A     EM
Sbjct: 359 DVVTYTTLISGLDRVGKIDAALATYSEM 386



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 107/247 (43%), Gaps = 22/247 (8%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  L++A  + + L+ ++ L    + D         N++  T   L ++++   
Sbjct: 532 KPDELSYSSLLHAYANAKKLDKMKTL----SEDIYAERIERHNWLVKT---LVLVNNKVN 584

Query: 92  TLARLDKGFP----RKSAYD--------TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
            L   +K F     R+ + D        ++ G+   +KK++E   V+ +M E     SA 
Sbjct: 585 NLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEE---VLSLMMENSINHSAA 641

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T++ ++ + +R    E+   ++  +K   + PD  +YN ++ AY  KG +   S +  +M
Sbjct: 642 TYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEM 701

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           +   +  D  TY+  +         EEA  L+R +V  G      T+  ++    R G  
Sbjct: 702 KCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRM 761

Query: 260 AQAVKFV 266
            +A  F+
Sbjct: 762 VEAKSFL 768



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 3/137 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  Y +LI    +    D+A+ +   M E G      T++ +LS L RG R E+A  
Sbjct: 462 IPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEK 521

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M +    PD  +Y+ LL AY     L     + + +  E++         LVL   
Sbjct: 522 LFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNN 581

Query: 220 RAGRV---EEAFVLLRR 233
           +   +   E+AF  LRR
Sbjct: 582 KVNNLPETEKAFQELRR 598


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 8/242 (3%)

Query: 67  FNTANTF--NFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALR 124
           FN AN      I    +   VL+ + R L+  D G    +  D L+    K  ++ +A  
Sbjct: 138 FNLANGLLIKMIRAYPSPPVVLASIHRALS--DSGHRSPAVLDVLVDTYKKSGRVQDAAE 195

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           VV +M + G   S    + +L  L R   M   W + E M    +SPD+  Y+ L+ AYC
Sbjct: 196 VVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYC 255

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
                     VL +M E   G +  TY+ L+ G CR+G VEEAF   + M D G      
Sbjct: 256 KVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGF 315

Query: 245 TYAHVMGALL--RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
           TY  ++  L   R    A+A+   M C   ++K +  ++ +L    +     +EA  ++K
Sbjct: 316 TYGALINGLCKSRRSNEAKALLDEMSCA--ELKPNVVVYANLIDGFMREGNADEAFKMIK 373

Query: 303 EM 304
           EM
Sbjct: 374 EM 375



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK+++ D A +V+  M E G GL+ +T++ +++ L R   +EEA+G 
Sbjct: 242 PDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGF 301

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M++  + PD   Y  L+   C          +L +M   +L  +   Y  L+ G  R
Sbjct: 302 KKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMR 361

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G  +EAF +++ MV  G      TY +++  L ++G   +A
Sbjct: 362 EGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA 403



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 2/209 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    YD+LV        ++    LL +  RD       T+N I           D  R
Sbjct: 381 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 440

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+ ++     P    Y  +I  LC+  + ++A  +++ M   G   +A  + P++S   
Sbjct: 441 LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 500

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R   +  A  + + M ++ V PDL  YN L+      G +  ++    +M+E  L  +  
Sbjct: 501 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 560

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G  + G +E A  L++RM+D G
Sbjct: 561 TYSGLIHGYLKNGDLESAEQLVQRMLDTG 589



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 27/250 (10%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVR-YLLNKRARDCCFNTANTFNFITNTENSLS 84
           +G  PD  T   Y  L+ A    R+ +T +  L+  R R C  NT  T+N +        
Sbjct: 238 AGISPDVYT---YSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTV-TYNVL-------- 285

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            ++ LCR+ A +++ F            P    Y  LI  LCK ++ +EA  ++D M+  
Sbjct: 286 -IAGLCRSGA-VEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCA 343

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
               + + +  ++    R    +EA+ +++ M    V P+   Y+ L+   C  G +   
Sbjct: 344 ELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA 403

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           S +LK+M  +    D  TY+ ++ G  R    ++AF LL  M + G S    TY+ ++  
Sbjct: 404 SLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHG 463

Query: 253 LLRLGYYAQA 262
           L + G   +A
Sbjct: 464 LCQSGEPEKA 473



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 92/205 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI  LC+   ++EA      M + G      T+  +++ L + +R  EA  L++ M 
Sbjct: 282 YNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 341

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y  L+  +  +GN      ++K+M    +  +  TYD LV G C+ G+++
Sbjct: 342 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMD 401

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A +LL++MV D       TY  ++    R      A + +       I  +   +  + 
Sbjct: 402 RASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMI 461

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
             L       +A+ +L+EM  + LK
Sbjct: 462 HGLCQSGEPEKASDLLEEMTTKGLK 486



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  YD L+  LCK+ ++D A  ++  M         IT++ I+    R    ++A+ L
Sbjct: 382 PNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRL 441

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   +SP++  Y+ ++   C  G     S +L++M  + L  +A  Y  L+ G CR
Sbjct: 442 LSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR 501

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G V  A  +  +M           Y  ++  L ++G   ++ K+
Sbjct: 502 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKY 546



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 64/133 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  L     ++ A RV+  + + G       +  ++S L +    E+A+G+++ M 
Sbjct: 632 YGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMS 691

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  V P++  YN L+   C  G+++    V   +  + L  +  TY +L+ G+C+ G + 
Sbjct: 692 KKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDIS 751

Query: 226 EAFVLLRRMVDDG 238
            AF L   M+  G
Sbjct: 752 NAFYLYNEMLATG 764



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 87/210 (41%), Gaps = 1/210 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P    Y  L+    K   I++       M + G  L    +  ++  L+    M
Sbjct: 586 LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNM 645

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E A+ ++  +++    PD+  Y+ L++  C   +     G+L +M ++ +  +   Y+AL
Sbjct: 646 EAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 705

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C++G +  A  +   ++  G      TY  ++    ++G  + A           I
Sbjct: 706 IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 765

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             D  ++  L +         +A F+++EM
Sbjct: 766 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 795



 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 95/226 (42%), Gaps = 29/226 (12%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L++ +    D+    YL N+         A  ++ +T      S   DL + 
Sbjct: 732 PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTT---GCSSAGDLEQA 788

Query: 93  LARLDKGFPRK----SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           +  +++ F R     S+++ L+   CK  K+ E L+++ ++   G   +A+T   I+S L
Sbjct: 789 MFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGL 848

Query: 149 TRGKRMEEAWGL--------------------MEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           +   ++ E   +                    M+++ + ++  D+   + ++  +C +GN
Sbjct: 849 SEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVV--DDMIRDHCKEGN 906

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           L     +   +  +       +Y A+V   CR G++ EA  LL+ M
Sbjct: 907 LDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEM 952



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 63/158 (39%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  Y  LI    K   ++ A ++V  M + G   + + +  +L    +   +E+   
Sbjct: 556 LPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSS 615

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M +  V  D   Y  L+      GN+ A   VL  +E+     D   Y +L+ G C
Sbjct: 616 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLC 675

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +    E+AF +L  M   G       Y  ++  L + G
Sbjct: 676 KTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 713



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 85/207 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C+   +  A  + D M +         ++ ++  L++  R+EE+   
Sbjct: 487 PNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKY 546

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+E  + P+   Y+ L+  Y   G+L +   ++++M +  L  +   Y  L+    +
Sbjct: 547 FAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFK 606

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +  +E+     + M+D G  +    Y  ++  L   G    A + +          D  +
Sbjct: 607 SDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV 666

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL S L       +A  IL EM+K+
Sbjct: 667 YSSLISGLCKTADREKAFGILDEMSKK 693


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 83/163 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI   CK+KK+DEA+ +   M         +T++ ++  L +  ++  A  L
Sbjct: 335 PDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKL 394

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  V PD+  Y+ +L A C    +     +L K++++ +  +  TY  L+ G C+
Sbjct: 395 VDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCK 454

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR+E+A  +   ++  G ++  +TY  ++      G + +A+
Sbjct: 455 GGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAL 497



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 68/137 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LCKL KI  AL++VD M + G     IT+  IL  L +  ++++A  L
Sbjct: 370 PDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIAL 429

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +K+  + P++  Y  L+   C  G L     + + +  +       TY  ++ G C 
Sbjct: 430 LTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCN 489

Query: 221 AGRVEEAFVLLRRMVDD 237
            G  +EA  LL +M D+
Sbjct: 490 KGLFDEALALLSKMKDN 506



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 94/204 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+   CK  K+ E   V  +M + G   + +T+  ++      K + +A  +
Sbjct: 265 PDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSI 324

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V+PD+ +YN L+  +C    +     + K+M  + +  D  TY++L+ G C+
Sbjct: 325 LYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCK 384

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++  A  L+  M D G      TY+ ++ AL +     +A+  +     + I+ +   
Sbjct: 385 LGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYT 444

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L   L    R  +A+ I +++
Sbjct: 445 YTILIDGLCKGGRLEDAHNIFEDL 468



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 92/207 (44%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           +  Y TLI  LCK+ +   AL ++  +       + + +  I+  + + K + +A+ L  
Sbjct: 162 QVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYS 221

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M    +SP++  Y+ L++ +   G L     +  KM  E +  D  T++ LV G C+ G
Sbjct: 222 EMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDG 281

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           +++E   +   M+  G      TY  +M     +    +A   +     R +  D + + 
Sbjct: 282 KMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYN 341

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDL 309
            L      +++ +EA  + KEM+ + +
Sbjct: 342 ILIDGFCKIKKVDEAMNLFKEMHHKHI 368



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 2/217 (0%)

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L R+D     P    Y T+I  +CK K +++A  +   M   G   + +T+  ++S    
Sbjct: 185 LRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFT 244

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++++A  L   M    + PD+  +N L+  +C  G +     V   M ++ +  +  T
Sbjct: 245 VGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVT 304

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y +L+ G C    V +A  +L  M   G +    +Y  ++    ++    +A+       
Sbjct: 305 YCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMH 364

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            + I  D   + SL   L  L + + A  ++ EM+ R
Sbjct: 365 HKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDR 401



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 97  DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G P     Y +++  LCK  ++D+A+ ++  + + G   +  T+  ++  L +G R+E
Sbjct: 400 DRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLE 459

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  + E +     +  +  Y  ++  +C KG       +L KM++     DA TY+ ++
Sbjct: 460 DAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIII 519



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 87/207 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI  LC   +I +AL   D +   GF L  + +  ++  L +      A  L
Sbjct: 125 PNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDL 184

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +    V P++  Y+ ++   C   ++     +  +M  + +  +  TY AL+ G   
Sbjct: 185 LRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFT 244

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++++A  L  +M+ +       T+  ++    + G   +      +   + IK +   
Sbjct: 245 VGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVT 304

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL      ++  N+A  IL  M++R
Sbjct: 305 YCSLMDGYCLVKEVNKAKSILYTMSQR 331



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/290 (20%), Positives = 104/290 (35%), Gaps = 33/290 (11%)

Query: 54  VRYLLNKRARDCCFNTANTFNFITNTENSLSVLS---------------DLCRTLARLDK 98
           V Y + K+     F     FNFI  + + ++ +                D     +RL +
Sbjct: 10  VSYFVPKKFHSFQFLKNTHFNFIPYSSSKINFIPYSSISTTFHNNNDVVDAFSLFSRLLR 69

Query: 99  GFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMA-EG---------------GFGLSAIT 140
             P   A  ++ ++G L K K     L +   M  EG               G+  + IT
Sbjct: 70  QNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPHQLMGYHPNTIT 129

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++  L    ++ +A    + +  +    D   Y  L+   C  G   A   +L++++
Sbjct: 130 FTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVD 189

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              +  +   Y  ++ G C+   V +AF L   MV  G S    TY+ ++     +G   
Sbjct: 190 GNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLK 249

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            A+         +IK D   F  L        +  E   +   M K+ +K
Sbjct: 250 DAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIK 299


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 19/226 (8%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF- 100
           ++A G + D+ T   L+N   ++   + AN             +L+++      LD G  
Sbjct: 197 MHATGVQPDVYTYSVLINGLCKESKMDEAN------------EMLNEM------LDNGLV 238

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  K+D A+ +   M   GF    IT++ ++  L R   + +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDL 298

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    + PD   Y  L+   C +G+L  T  + K+M  E +  D  TY AL+ G CR
Sbjct: 299 VEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCR 358

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            GR  +A  +LR M+  G      TY  +M    + G    A K +
Sbjct: 359 EGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLL 404



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK  ++  A  V D + +     S ++F+ +++   R   +
Sbjct: 128 LECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M    V PD+  Y+ L+   C +  +   + +L +M +  L  +  T+  L
Sbjct: 188 DEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+ G+V+ A  + ++M+  G      TY  ++  L R G   QA   V
Sbjct: 248 IDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 92/210 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    +L  +DE  R+   M   G      T+  +++ L +  +M+EA  +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEM 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  + P+   +  L+  +C  G +     + K+M  +    D  TY+ L+ G CR
Sbjct: 229 LNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCR 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + +A  L+  M+  G      TY  ++    + G      +        +I+LD   
Sbjct: 289 RGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVT 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCREGRAGDAEKMLREMLTVGLK 378



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 27/206 (13%)

Query: 54  VRYLLNKRARDCCFNTANTFNFITNTENS----LSVLSDLCRTLARLDKGFPRKSAYDTL 109
           +R +++++ +D   +T+  F  I  T+ +    L V S L   LA L+ GF R       
Sbjct: 36  IRVVVSRKGKD---STSAVFAAILETKGTQISDLYVFSGL--MLAYLESGFVR------- 83

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
                      +A++   +  +    +   T   +L  L + +     WG  + + E   
Sbjct: 84  -----------DAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFYKEILECGY 132

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            P L  +N L+  +C +G +     V   + +  L     +++ L+ G  R G ++E F 
Sbjct: 133 PPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLR 255
           L   M   G      TY+ ++  L +
Sbjct: 193 LKSAMHATGVQPDVYTYSVLINGLCK 218


>gi|359497557|ref|XP_003635566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17670-like, partial [Vitis vinifera]
          Length = 253

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 96/231 (41%), Gaps = 29/231 (12%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           +  +NFI   +NS  +  DL                Y  LI  +C  K + EA R+++++
Sbjct: 1   STVYNFIDELQNSFQLKPDLV--------------TYTILIDNVCNGKNLREATRLLEVL 46

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E GF      ++ I+       +  EA G+ + MKE  V PDL  YN L+      G +
Sbjct: 47  GEAGFKPDCYVYNTIMKGYCILDKGSEAIGVYKKMKEEGVEPDLVTYNTLIFGLSKSGRV 106

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                 L  M E     DA TY +L+ G CR G    A  LL  M   G S    TY  +
Sbjct: 107 KEARKFLDIMAEMGHFPDAVTYTSLMNGLCREGNALGALALLEEMEAKGCSPNSCTYNTL 166

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
           +  L +L               R ++   EL+G + S  + LE+ + A F+
Sbjct: 167 LHGLCKL---------------RMLERGIELYGVMKSGGMKLEKASYATFV 202



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           +++ V +   + G  PD  T   Y+ L+        ++  R  L+  A    F  A T+ 
Sbjct: 73  EAIGVYKKMKEEGVEPDLVT---YNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYT 129

Query: 75  FITN----TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
            + N      N+L  L+ L    A+     P    Y+TL+  LCKL+ ++  + +  +M 
Sbjct: 130 SLMNGLCREGNALGALALLEEMEAK--GCSPNSCTYNTLLHGLCKLRMLERGIELYGVMK 187

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            GG  L   ++   +  L +  R+ EA+   + + E +   D+TAY+ L
Sbjct: 188 SGGMKLEKASYATFVRALCKEGRVAEAYEAFDYVVESKSFDDVTAYSTL 236


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 2/238 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   Y  L+N      + E V  LL + A          FN + + E    +++    T
Sbjct: 269 PTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAET 328

Query: 93  LARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           + R+ +    P  + Y+T+I   CK  +I EA   ++   E G   +  ++ P++    +
Sbjct: 329 MRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCK 388

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
                +A G++  + EI   PDL +Y   +      G +     V +KM E+ +  DA+ 
Sbjct: 389 QGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQI 448

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           Y+ L+ G C+ GR     +LL  M+D         +A +M   +R G   +A+K   V
Sbjct: 449 YNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKV 506



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 67/153 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I   CK  K+ +AL  ++ M          T+  ++    +   M  A  +
Sbjct: 514 PGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKM 573

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M + +  P++  Y  L+  +C K ++     V + M+   L  +  TY  LV G  +
Sbjct: 574 FGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFK 633

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           AG+ E+A  +   M+ +G     +T+ +++  L
Sbjct: 634 AGKPEKATSIFELMLMNGCPPNDATFHYLINGL 666



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/162 (18%), Positives = 72/162 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TL+    +  ++DEA+++  ++   G     + ++ ++    +  +M +A   
Sbjct: 479 PDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSC 538

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK +  +PD   Y+ ++  Y  + ++++   +  +M + K   +  TY +L+ G C+
Sbjct: 539 LNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCK 598

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              +  A  + R M          TY  ++G   + G   +A
Sbjct: 599 KADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKA 640



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 1/141 (0%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++KG FP    Y+ L+  LCK  +      ++  M +         F  ++    R   +
Sbjct: 438 MEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGEL 497

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  + +V+    V P +  YN ++  +C  G +T     L KM+      D  TY  +
Sbjct: 498 DEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTV 557

Query: 215 VLGACRAGRVEEAFVLLRRMV 235
           + G  +   +  A  +  +M+
Sbjct: 558 IDGYVKQHDMSSALKMFGQMM 578



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 72/164 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y   I  +    +ID AL V + M E G    A  ++ ++S L +  R      L
Sbjct: 409 PDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLL 468

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V PD+  +  L+  +   G L     + K +  + +      Y+A++ G C+
Sbjct: 469 LSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCK 528

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            G++ +A   L +M +   +    TY+ V+   ++    + A+K
Sbjct: 529 FGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALK 572



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 37/222 (16%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           PDE T   Y  +++    + D+ +   +  +  +           F  N     S+++  
Sbjct: 549 PDEYT---YSTVIDGYVKQHDMSSALKMFGQMMKH---------KFKPNVITYTSLINGF 596

Query: 90  CRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           C+   + R +K F         P    Y TL+G   K  K ++A  + ++M   G   + 
Sbjct: 597 CKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPND 656

Query: 139 ITFHPILSVLT----------RGKRMEEAWGLMEVMKEIRVSPD----LTAYNYLLTAYC 184
            TFH +++ LT              ME    L+     + +S      + AYN ++   C
Sbjct: 657 ATFHYLINGLTNTATSPVLIEEKDSMENERSLILDFFTMMLSEGWDQVIAAYNSVIVCLC 716

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             G +     +L KM  +    D+  + A++ G C  G+ +E
Sbjct: 717 KHGMVDTAQLLLTKMLTKGFLIDSVCFTAMLHGLCHKGKSKE 758


>gi|356541205|ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Glycine max]
          Length = 768

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 2/217 (0%)

Query: 97  DKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +KGF  P    Y++LI  LC+L K+D+A+ V + +          T+  ++   ++  RM
Sbjct: 242 NKGFVAPDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLIQACSKTYRM 301

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A  +   M+     PD  AYN LL  +     +     + +KM +E +     TY+ L
Sbjct: 302 EDAIRIFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNIL 361

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G  R GR E A+ +   +   GQ V   TY+ V+  L + G   +A++ V     R  
Sbjct: 362 IHGLFRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGQLEEALQLVEEMESRGF 421

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            +D     SL   +    R++  + ++K + + DL +
Sbjct: 422 VVDLVTITSLLISIHRHGRWDWTDRLMKHIREGDLAL 458



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 64/149 (42%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+  A ++ +I ++ G    + T++ I+S   +     EAW ++  M E     D+  YN
Sbjct: 577 KLSLACKLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFAEAWAILTEMGEKFCPTDIATYN 636

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++      G     S VL ++  +    D   Y+ L+    +A R++E   L  +M   
Sbjct: 637 MIIQGLGKMGRADLASAVLDRLLRQGGYLDIVMYNTLINALGKASRIDEVNKLFEQMRSS 696

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G +    TY  ++    + G    A KF+
Sbjct: 697 GINPDVVTYNTLIEVHSKAGRLKDAYKFL 725



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           LS+     ++  A  L E+  +  V P    YN +++++  KG       +L +M E+  
Sbjct: 569 LSIFLAKGKLSLACKLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFAEAWAILTEMGEKFC 628

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRL 256
             D  TY+ ++ G  + GR + A  +L R++  G     V+Y+T  + +G   R+
Sbjct: 629 PTDIATYNMIIQGLGKMGRADLASAVLDRLLRQGGYLDIVMYNTLINALGKASRI 683



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           + Y+ +I  L K+ + D A  V+D ++ +GG+ L  + ++ +++ L +  R++E   L E
Sbjct: 633 ATYNMIIQGLGKMGRADLASAVLDRLLRQGGY-LDIVMYNTLINALGKASRIDEVNKLFE 691

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
            M+   ++PD+  YN L+  +   G L      LK M
Sbjct: 692 QMRSSGINPDVVTYNTLIEVHSKAGRLKDAYKFLKMM 728



 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 3/179 (1%)

Query: 68  NTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVV 126
           +  NTF  I   +  LS+   L    +  D G  P    Y++++    K     EA  ++
Sbjct: 563 DMVNTFLSIFLAKGKLSLACKLFEIFS--DAGVDPVSYTYNSIMSSFVKKGYFAEAWAIL 620

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M E        T++ I+  L +  R + A  +++ +       D+  YN L+ A    
Sbjct: 621 TEMGEKFCPTDIATYNMIIQGLGKMGRADLASAVLDRLLRQGGYLDIVMYNTLINALGKA 680

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
             +   + + ++M    +  D  TY+ L+    +AGR+++A+  L+ M+D G S  + T
Sbjct: 681 SRIDEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGRLKDAYKFLKMMLDAGCSPNHVT 739



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 5/152 (3%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F+ +G    +P S  Y+ ++++   +        +L +     C     T+N I      
Sbjct: 588 FSDAGV---DPVSYTYNSIMSSFVKKGYFAEAWAILTEMGEKFCPTDIATYNMIIQGLGK 644

Query: 83  LSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +         L RL    G+     Y+TLI  L K  +IDE  ++ + M   G     +T
Sbjct: 645 MGRADLASAVLDRLLRQGGYLDIVMYNTLINALGKASRIDEVNKLFEQMRSSGINPDVVT 704

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           ++ ++ V ++  R+++A+  +++M +   SP+
Sbjct: 705 YNTLIEVHSKAGRLKDAYKFLKMMLDAGCSPN 736


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSAYD------------TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LDKGF  K+A               LI  LCK  K+DEA  + + M + G   + +T
Sbjct: 184 LGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M     SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E AF L +RM+++   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK  +I  A  V D + + G   S ++F+ +++   R   +
Sbjct: 128 LECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++ + L   M    V PD+     L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 188 DKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C++GRV+ A  + ++M+  G S    TY  ++  L R G   QA   ++    + +
Sbjct: 248 IDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 90/210 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TLI    +L  +D+  R+   M   G      T   +++ L +  +M+EA  L
Sbjct: 169 PSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P+   +  L+  +C  G +     + K+M  +    D  TY+ L+ G CR
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCR 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A +         I+LD   
Sbjct: 289 KGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRAVDAEKMLREMLSVGLK 378



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 20/217 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANT-FN------FITNTENSLSVLSDLCRTLA 94
           ++A+G   D+ T   L+N   ++   + AN  FN       + N     +++   C++  
Sbjct: 197 MHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKS-G 255

Query: 95  RLD-----------KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D           +G+ P    Y+TLI  LC+   + +A  ++  M+  G     IT+ 
Sbjct: 256 RVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+ L + M E  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
            L  +  TY  ++ G C+ G V+ A  LL+ M  DG 
Sbjct: 376 GLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGH 412


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 1/215 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KGF       + LI  LCK   + EA+R++  M E GF L  IT++ ++S   +  ++
Sbjct: 483 LEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKV 542

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           EE + L   M +  + PD   YN L+   C  G L     +  + +   L  +  TY  +
Sbjct: 543 EEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVM 602

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+A ++EE   L   ++     +    Y  ++ A  R G   +A K       + I
Sbjct: 603 IDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGI 662

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              T  + SL   +  + R  +A  ++ EM K  L
Sbjct: 663 PPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGL 697



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 8/255 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYY-DDLVNAAGHERDLETVRYLLNKRARDC-CFNTA-N 71
            ++ V R     G FP   T  +    LV A   E+       +    + D   F+TA N
Sbjct: 195 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAIN 254

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
            F      E+++ +  D+ +         P    Y+ LI  LCK   +DEA R  + M +
Sbjct: 255 AFCKGGKVEDAIQLFFDMEKLGVS-----PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVK 309

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G   + IT+  +++ L + ++  EA  +++   E   +P+   YN L+  YC  GNL  
Sbjct: 310 DGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGD 369

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +   M  + +  ++ T ++++ G C+ G++E+A  +L  M+  G S+    +  ++ 
Sbjct: 370 ALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIH 429

Query: 252 ALLRLGYYAQAVKFV 266
            L     +  A++F+
Sbjct: 430 WLCMNSRFESALRFL 444



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 129/351 (36%), Gaps = 72/351 (20%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y++L++      +L+       K  +D    T  T++ + N    L   ++    
Sbjct: 279 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSV 338

Query: 93  LAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEG----------------- 132
           L   L+KGF P +  Y+TLI   CK+  + +ALR+  D++++G                 
Sbjct: 339 LKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCK 398

Query: 133 -----------------GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD--- 172
                            GF ++   F  I+  L    R E A   +  M    + P+   
Sbjct: 399 IGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGL 458

Query: 173 --------------------------------LTAYNYLLTAYCFKGNLTATSGVLKKME 200
                                           L   N L+   C  GN+     +LKKM 
Sbjct: 459 LTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKML 518

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E     D  TY+ L+ G C+ G+VEE F L   MV  G      TY  ++  + R+G   
Sbjct: 519 ERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLD 578

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           +AV     C  RD+  +   +G +       ++  E   +  E+  ++L++
Sbjct: 579 EAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLEL 629



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 98  KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KG P  +A Y +LI  +C + ++++A  ++D M + G   + + +  ++    +  +M++
Sbjct: 660 KGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDK 719

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
              +++ M    + P+   Y  ++  Y   G++   + +L +M  + +  D  TY+ L  
Sbjct: 720 VVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTN 779

Query: 217 GACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           G C+ G++EE F +   M  +G     + Y+T  H
Sbjct: 780 GFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVH 814



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 78/180 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TLI   C+     EA ++ D M   G   +  T+  ++  +    RME+A  L++ M
Sbjct: 633 VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM 692

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++  + P++  Y  L+  YC  G +     VL++M    +  +  TY  ++ G  ++G +
Sbjct: 693 RKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 752

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           + A  LL  MV  G      TY  +     + G   +  K         + LD   + +L
Sbjct: 753 KTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTL 812



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 5/267 (1%)

Query: 45  AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRK 103
            G    +   R+L NK      F T  T  F+ ++    + L         + +G  P  
Sbjct: 191 VGFRNAIGVFRFLANKGV----FPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDV 246

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
             + T I   CK  K+++A+++   M + G   + +T++ ++  L +   ++EA+   E 
Sbjct: 247 YLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEK 306

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M +  V+  L  Y+ L+            + VLK+  E+    +   Y+ L+ G C+ G 
Sbjct: 307 MVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGN 366

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           + +A  +   MV  G +    T   ++    ++G   QA   +     R   ++   F +
Sbjct: 367 LGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTT 426

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           +   L    RF  A   L+EM  R+++
Sbjct: 427 IIHWLCMNSRFESALRFLREMLLRNMR 453



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 87/211 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I   CK  KI+E  ++   +      L+++ ++ ++    R     EA+ L
Sbjct: 594 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 653

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M+   + P    Y+ L+   C  G +     ++ +M +E L  +   Y AL+ G C+
Sbjct: 654 HDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCK 713

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++++   +L+ M          TY  ++    + G    A K +    G+ I  DT  
Sbjct: 714 LGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVT 773

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           +  L +      +  E   I   M++  L +
Sbjct: 774 YNVLTNGFCKEGKIEEGFKICDYMSQEGLPL 804



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  LIG  CKL ++D+ + V+  M+      + IT+  ++   ++   M+ A  
Sbjct: 698 LPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAK 757

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           L+  M    + PD   YN L   +C +G +     +   M +E L  D  TY  LV G
Sbjct: 758 LLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHG 815


>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
          Length = 709

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 1/167 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC  ++I EAL ++  M + G     I++  ++S L + KR+ E W L
Sbjct: 231 PDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFLCKEKRVAEVWNL 290

Query: 161 MEVMK-EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +E M+ +  + PD   YN L+      G+       L++ E ++   D   Y A+V   C
Sbjct: 291 LERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFC 350

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             GR+ EA  ++  M+  G      TY+ V+    R+G   QA K +
Sbjct: 351 LNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMM 397



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 1/174 (0%)

Query: 95  RLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           R D G FP +  Y+ LI  L K    DEAL  +       F +  + +  I+       R
Sbjct: 295 RNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLNGR 354

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M EA  ++  M      PD+  Y+ ++  +C  G L     ++K M +     +  T+ A
Sbjct: 355 MSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTA 414

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           L+ G C+ G+  EA+ LL +  ++  +    TY+ +M    R G   ++   VM
Sbjct: 415 LLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVM 468



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 1/188 (0%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+  A+RV+ +M + G        +  ++VL    R+++A    E M+ + V PD+  YN
Sbjct: 178 KLRSAMRVLQLMQKDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGVDPDVVTYN 237

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+   C    +     ++  M +     D  +Y  ++   C+  RV E + LL RM +D
Sbjct: 238 CLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFLCKEKRVAEVWNLLERMRND 297

Query: 238 -GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G      TY  ++  L + G+  +A+ F+    G+  ++D   + ++        R +E
Sbjct: 298 AGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLNGRMSE 357

Query: 297 ANFILKEM 304
           A  I+ EM
Sbjct: 358 AKEIIGEM 365



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 119/290 (41%), Gaps = 8/290 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  +  L+N             LLNK   +    +  T++ I +       L + C 
Sbjct: 406 KPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCD 465

Query: 92  TLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            + + L KGF P     + LI  LCK +K   A   ++     G  ++ + F  ++   +
Sbjct: 466 VVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNFTTVIHGFS 525

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R   +E A  L++ M      PD+  Y  ++ A   KG +   + +++KM    L     
Sbjct: 526 RQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATALVEKMLNRGLLPTPV 585

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV----KF 265
           TY  ++   C  G VE+   LL +M+   +    S Y  V+  L   G  ++A     K 
Sbjct: 586 TYRTVIHRYCEKGAVEDLLNLLDKMLT--KQGFSSAYNQVIEKLCAFGKLSEAYNLLSKV 643

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
           +     RD +    L  S  ++ + L+ +N A  + +     DLK+  K+
Sbjct: 644 LRSASKRDAQTCHILMDSFLNRGLPLQSYNVACRMFQRNLIPDLKLCQKV 693



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 108/260 (41%), Gaps = 23/260 (8%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNA-AGHERDLETVRYLLN---KRAR-DCCFNTANT 72
           L+ R    +G FPD+ T   Y+ L++  A H    E + +L     KR R D    +A  
Sbjct: 290 LLERMRNDAGIFPDQIT---YNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIV 346

Query: 73  FNFITNTENSLS------VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126
            +F  N   S +      ++S  CR         P    Y  ++   C++ ++D+A +++
Sbjct: 347 HSFCLNGRMSEAKEIIGEMISKGCR---------PDVVTYSAVVDGFCRIGELDQARKMM 397

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M + G   + +T   +L+ L +  +  EAW L+   +E   +P    Y+ ++  +  +
Sbjct: 398 KHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRRE 457

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G L  +  V+ +M ++     A   + L+   C+  +   A   + +    G  +    +
Sbjct: 458 GKLVESCDVVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNF 517

Query: 247 AHVMGALLRLGYYAQAVKFV 266
             V+    R G    A+  +
Sbjct: 518 TTVIHGFSRQGDLESALSLL 537



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 67/150 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +D ++  L + +  D A RVV +M   G       F  ++   +R  ++  A  ++++M+
Sbjct: 131 FDEMLALLSRTRLHDPARRVVRLMIRRGIRRGTRQFAHLMLSYSRAGKLRSAMRVLQLMQ 190

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +   +PD+   N  +      G +       ++M    +  D  TY+ L+ G C A R+ 
Sbjct: 191 KDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIV 250

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           EA  ++  M+ +G      +Y  VM  L +
Sbjct: 251 EALEMIGSMLQNGCPPDKISYFTVMSFLCK 280


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 4/226 (1%)

Query: 26   SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
            SG F   PT   Y  L++       LE  + L  +     C      +N + N       
Sbjct: 888  SGDF--SPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGD 945

Query: 86   LSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
            ++  C    R+ + G  P   +Y +L+G LC+  ++D+AL   + + + G  L +I ++ 
Sbjct: 946  VNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNL 1005

Query: 144  ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
            ++  L R  R+EEA  L + M+   ++PDL  YN L+      G +     + ++++   
Sbjct: 1006 MIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIG 1065

Query: 204  LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            L  +  TY+AL+ G   +G  + A+ + +RM+  G S    T+A +
Sbjct: 1066 LEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 6/229 (2%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           L+ QSV +   FTK      +PT   Y+ L+       + E    L  +     C     
Sbjct: 771 LVAQSVFI--RFTKELGV--KPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVF 826

Query: 72  TFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N + +       +++L     ++      P    ++ +I  L K   +D+AL +   +
Sbjct: 827 TYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDL 886

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
             G F  +  T+ P+L  L +  R+EEA  L E M +    P+   YN L+  +   G++
Sbjct: 887 VSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDV 946

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
                + K+M  E +  D ++Y +LV   C AGRV++A     ++   G
Sbjct: 947 NTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTG 995



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 70/156 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y   I  L +  +IDEA R++  M + G G   +T+  ++  L    ++++A  L
Sbjct: 262 PNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMEL 321

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK     PD   Y  +L  +   G+L        +ME +    D  T+  LV   C+
Sbjct: 322 FVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCK 381

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           AG ++EAF LL  M   G      TY  ++  LLR+
Sbjct: 382 AGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRV 417



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 4/199 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+  LCK   IDEA  ++D+M + G   +  T++ ++S L R  R+++A  L
Sbjct: 367 PDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDL 426

Query: 161 MEVMKEIRVSPDLTAYNYLLTA--YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
              M+ + V P  TAY Y+L    Y   G         +KM+   +  +    +A +   
Sbjct: 427 FNNMETLGVVP--TAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSL 484

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
              GR+ EA V+  R+  +G +    TY  +M    + G   +A++ +        + D 
Sbjct: 485 AEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDI 544

Query: 279 ELFGSLGSKLIGLERFNEA 297
            +  SL + L    R +EA
Sbjct: 545 IVINSLINTLYKAGRVDEA 563



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 92/206 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A +  +  L ++ ++ EA  + + +   G    ++T++ ++   ++  +++EA  L
Sbjct: 472 PNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIEL 531

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E +  PD+   N L+      G +     +  ++++ KL     TY+ L+ G  +
Sbjct: 532 LSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGK 591

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+ A  L   M  +G      T+  ++  L +      A+K +      +   D   
Sbjct: 592 EGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLT 651

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           F ++   L+  +R ++A ++  +M K
Sbjct: 652 FNTIIHGLVIEKRVSDAIWLFHQMKK 677



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 102/255 (40%), Gaps = 4/255 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           P    +  LVNA     +++   +LL+   +       +T+N + +     N L    DL
Sbjct: 367 PDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDL 426

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              +  L    P    Y   I    K  + D+AL   + M   G   + +  +  L  L 
Sbjct: 427 FNNMETLGV-VPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLA 485

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              R+ EA  +   +K   ++PD   YN ++  Y   G +     +L  M E +   D  
Sbjct: 486 EMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDII 545

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
             ++L+    +AGRV+EA+ +  R+ D   +    TY  ++  L + G   +A++     
Sbjct: 546 VINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASM 605

Query: 270 GGRDIKLDTELFGSL 284
            G     +T  F ++
Sbjct: 606 TGNGCPPNTITFNTI 620



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M E GF L+A +++ ++ +L +     EA  +   M    + P L  ++ L+ A   + +
Sbjct: 185 MREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRD 244

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                 +L++ME   L  +  TY   +    RAGR++EA  +++RM DDG      TY  
Sbjct: 245 TETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTV 304

Query: 249 VMGALLRLGYYAQAVKF 265
           ++ AL   G    A++ 
Sbjct: 305 LIDALCTAGKLDDAMEL 321



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ LI  L +     EAL +   M   G   S  TF  ++    + +  E    L+E M
Sbjct: 196 SYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEM 255

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           + + + P++  Y   +      G +     ++K+ME++  G D  TY  L+   C AG++
Sbjct: 256 ESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKL 315

Query: 225 EEAFVLLRRM 234
           ++A  L  +M
Sbjct: 316 DDAMELFVKM 325


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 310 VKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSV 369

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D   +  + ++        + + +LKEM +
Sbjct: 370 DAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK   + +A  ++D M+  G     IT+  ++    +   ++ A+  
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEH 339

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  +  D  AY  L++  C +G       +L++M    L  DARTY  ++   C+
Sbjct: 340 RKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            G V +   LL+ M  DG      TY  +M  
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 22/224 (9%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E + E      L  +N L+
Sbjct: 90  DAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM 149

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +Y+ L+ G  R G ++E F L   M+  G  
Sbjct: 150 HRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ 209

Query: 241 VLYSTYAHVMGAL----------------LRLGYYAQAVKFVMV----CGGRDIKLDTEL 280
               TY+ ++  L                L  G     V F  +    C    + L  E+
Sbjct: 210 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 269

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINVK 324
           +  + S+ +  +       I     K DLK    L D  E++VK
Sbjct: 270 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID--EMSVK 311



 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 87/221 (39%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 94  CYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 153

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 154 KDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C+  ++++A  L   M+  G      T+  ++    + G    A++     
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + +  D   + +L   L       +A+ ++ EM+ + LK
Sbjct: 274 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 314


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 7/218 (3%)

Query: 96  LDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KGF   +   + LI  LC+    +EA +++  M E G  L +I+++ ++    +  ++
Sbjct: 434 LEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKV 493

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           EE + L E M    + PD+  YN LL   C  G +    G+  + ++     DA TY  +
Sbjct: 494 EEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIM 553

Query: 215 VLGACRAGRVEEAFVLLRRMVD---DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + G C+A RVEE   L + MV    +  +V+Y T   ++ A    G   +A +       
Sbjct: 554 IDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGT---LIRAYCENGNMREAFRLRDDMRS 610

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           R I   +  + SL   L  +   + AN +L EM K  L
Sbjct: 611 RGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGL 648



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 4/213 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  LCK  ++DEA +  + M +     S +T+  +++ L + +R +EA  +
Sbjct: 230 PNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCI 289

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +   +P+   YN L+  YC  GN++    +   M    +  ++ T ++L+ G C+
Sbjct: 290 LKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCK 349

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           + ++E A  LL  M+  G  +   T+  V+  L     +  A+ F+M    R+ K +  L
Sbjct: 350 SNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGL 409

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
              L S L    + +EA     E+  R L+ GF
Sbjct: 410 LTLLVSGLCQNGKQSEA----IELWYRLLEKGF 438



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 1/170 (0%)

Query: 97  DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG FP     + L+  L K  ++  + +V DIM   G       F  +++    G R++
Sbjct: 155 NKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVD 214

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  L   M+++ V+P++  YN ++   C  G L       +KME+E++     TY  L+
Sbjct: 215 DAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLI 274

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G  +  R +EA  +L+ M D G +     Y  ++    R+G  + A++ 
Sbjct: 275 NGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQI 324



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 78/151 (51%), Gaps = 1/151 (0%)

Query: 98  KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +G P+ SA Y +LI  L  +  +D A +++D M + G   + + +  ++    +  +M +
Sbjct: 611 RGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHK 670

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
              +++ M    V P+   Y  ++  +C  GN+ A + +L +M ++ +  DA TY+AL  
Sbjct: 671 VDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTN 730

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           G C+ G++EEA  +   M   G S+   TY 
Sbjct: 731 GFCKEGKMEEALKVCDLMSTGGISLDDITYT 761



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 4/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + T++   C   ++D+A+ +   M + G   + +T++ I+  L +  R++EA+  
Sbjct: 195 PDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQF 254

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M++ RV P L  Y  L+            + +LK+M +     +   Y+ L+ G CR
Sbjct: 255 KEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCR 314

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
            G +  A  +   M+ +G S    T   ++    +      A   +  M+ GG  I   T
Sbjct: 315 IGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGT 374

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             F S+  +L    RF+ A   + EM  R+ K
Sbjct: 375 --FTSVIHRLCLKCRFDSALLFIMEMLLRNFK 404



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 35/186 (18%)

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
              +  ++A  G   S  T + +LS L +   ++ ++ + ++M    V+PD+  ++ ++ 
Sbjct: 146 VFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVN 205

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
           A+C  G +     + +KME+  +  +  TY+ ++ G C+ GR++EAF    +M  +    
Sbjct: 206 AFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKE---- 261

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
                                           +K     +G L + L+ LERF+EAN IL
Sbjct: 262 -------------------------------RVKPSLVTYGVLINGLVKLERFDEANCIL 290

Query: 302 KEMNKR 307
           KEM+ R
Sbjct: 291 KEMSDR 296



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TLI   C+   + EA R+ D M   G   ++ T+  ++  L+    ++ A  L++ M
Sbjct: 584 VYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEM 643

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++  +SP++  Y  L+  YC  G +     +L++M    +  +  TY  ++ G C+ G +
Sbjct: 644 RKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNM 703

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           + A  LL  M   G      TY  +     + G   +A+K   +     I LD   + +L
Sbjct: 704 KAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTL 763



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 69/157 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LC + KI+EA  +     + G    A T+  ++    +  R+EE   L
Sbjct: 510 PDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKL 569

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M  +++  +   Y  L+ AYC  GN+     +   M    +   + TY +L+ G   
Sbjct: 570 FQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSN 629

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G V+ A  LL  M  +G S     Y  ++G   +LG
Sbjct: 630 IGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLG 666



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 36/247 (14%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G+ P    Y+TLI   C++  I  AL++ D M   G   +++T + ++    +  +ME
Sbjct: 295 DRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQME 354

Query: 156 EAWGLME---------------------------------VMKEI--RVSPDLTAYNYLL 180
            A  L+E                                 +M+ +     P+      L+
Sbjct: 355 HAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLV 414

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
           +  C  G  +    +  ++ E+   A+  T +AL+ G C AG  EEA  LL+ M++ G  
Sbjct: 415 SGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLV 474

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
           +   +Y  ++ A  + G   +  K       R I+ D   +  L   L  + +  EA  +
Sbjct: 475 LDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGL 534

Query: 301 LKEMNKR 307
             E  K 
Sbjct: 535 WHECKKN 541



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 81/198 (40%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y  +I   CK  +++E  ++   M       +A+ +  ++        M EA+ 
Sbjct: 544 FPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFR 603

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + M+   +      Y+ L+      G + + + +L +M +E L  +   Y AL+ G C
Sbjct: 604 LRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYC 663

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G++ +   +L+ M  +       TY  ++    +LG    A K +     + I  D  
Sbjct: 664 KLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAV 723

Query: 280 LFGSLGSKLIGLERFNEA 297
            + +L +      +  EA
Sbjct: 724 TYNALTNGFCKEGKMEEA 741



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y  +I   CKL  +  A ++++ MA+ G    A+T++ + +   +  +MEEA  +
Sbjct: 685 PNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKV 744

Query: 161 MEVMKEIRVSPDLTAYNYLLTAY 183
            ++M    +S D   Y  L+  +
Sbjct: 745 CDLMSTGGISLDDITYTTLIDGW 767


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 19/249 (7%)

Query: 36  AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT-FNFITNTENSLSVLS-----DL 89
            +Y+D++   G+   L     L+++  +D     A + F+ IT      SV+S     + 
Sbjct: 122 GFYEDILEC-GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 180

Query: 90  CRTLARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
              L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   +
Sbjct: 181 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPN 240

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            +TF  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ 
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLID 300

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M  + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G
Sbjct: 301 EMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 360

Query: 258 YYAQAVKFV 266
               A K +
Sbjct: 361 RSVDAEKML 369



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI   CK   +D A      M +    L  + +  ++S L +  R  +A  +
Sbjct: 309 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +  M  + + PD+  Y  ++  +C KG++   S +LK+M+         TY+ L+ G
Sbjct: 369 LREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N     +++   C+   R+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 257

Query: 97  DKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   + +A  ++D M+  G      T+  +
Sbjct: 258 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 317

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +  +  D  AY  L++  C +G       +L++M    L
Sbjct: 318 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 377

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             D  TY  ++   C+ G V +   LL+ M  +G +    TY  +M  
Sbjct: 378 KPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 61/149 (40%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C TL R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 88  CYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFC 147

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 148 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 207

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G C+  ++++A  L   M+  G
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLVKG 236


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 310 VKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSV 369

Query: 261 QAVKFV 266
            A K +
Sbjct: 370 DAEKML 375



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK   + +A  ++D M+  G     IT+  ++    +   ++ A+  
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEH 339

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  +  D  AY  L++  C +G       +L++M    L  DARTY  ++   C+
Sbjct: 340 RKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            G V +   LL+ M  DG      TY  +M  
Sbjct: 400 KGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 22/224 (9%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E + E      L  +N L+
Sbjct: 90  DAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM 149

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +Y+ L+ G  R G ++E F L   M+  G  
Sbjct: 150 HRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ 209

Query: 241 VLYSTYAHVMGAL----------------LRLGYYAQAVKFVMV----CGGRDIKLDTEL 280
               TY+ ++  L                L  G     V F  +    C    + L  E+
Sbjct: 210 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 269

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINVK 324
           +  + S+ +  +       I     K DLK    L D  E++VK
Sbjct: 270 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID--EMSVK 311



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 87/221 (39%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 94  CYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 153

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 154 KDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C+  ++++A  L   M+  G      T+  ++    + G    A++     
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + +  D   + +L   L       +A+ ++ EM+ + LK
Sbjct: 274 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 314


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 96/221 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI   CK   + EA  V+  M E G   + +T+  +++  +    + EA  L
Sbjct: 113 PNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKL 172

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +VM      PD+ +YN L+  YC    +     +  +M  + L  D  +Y+ L+ G C+
Sbjct: 173 FDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQ 232

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+ EA  L + M+ +G      TY+ ++    + GY A+A +         +K +  +
Sbjct: 233 LGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVM 292

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
           +  L   +       EA  +  E+  + L+   K    +EI
Sbjct: 293 YNILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHWKLFEI 333



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 90/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK ++++EAL +   M   G   +  T++ ++  L    R  EA  +
Sbjct: 43  PDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAM 102

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M  + + P++  ++ L+  +C +GN+    GVLK M E  +  +  TY +L+ G   
Sbjct: 103 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 162

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V EA  L   M+  G      +Y  ++    +     +A +       + +  D   
Sbjct: 163 QAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVS 222

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L   L  L R  EA+ + K M
Sbjct: 223 YNTLIDGLCQLGRLREAHDLFKNM 246



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 14/216 (6%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK+ +   A  +   M E G     +T+  I+  L + +R+ EA  +
Sbjct: 8   PDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDI 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK   +SP++  YN L+   C        S +L +M    +  +  T+  L+   C+
Sbjct: 68  FSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCK 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF-------VMVCGGRD 273
            G V EA  +L+ M + G      TY+ +M      GY  QA  F       VM+  G  
Sbjct: 128 EGNVFEARGVLKTMTEMGVEPNVVTYSSLMN-----GYSLQAEVFEARKLFDVMITKG-- 180

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            K D   +  L +     +R  EA  +  EM  + L
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGL 216



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 47/108 (43%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G+     T+  I++ L +      A GL + M E    PD+  Y+ ++ + C    
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           +     +   M+ + +  +  TY++L+ G C   R  EA  +L  M+ 
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMS 108


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 8/210 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK+ + + A  ++ +MA      +  ++  I++ L + +++++A+ L
Sbjct: 134 PSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQL 193

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK     PD   YN L+   C K  L     +L  M E     D  T+ AL+ G C 
Sbjct: 194 FEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCT 253

Query: 221 AGRVEEAFVLLRRMVDDGQS---VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             R++EAFVL + M   G +   V ++     +  L +L      V+    C    + L 
Sbjct: 254 TDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPAC-PEAVILY 312

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
           T +F  LG +      F+ A  +L++M +R
Sbjct: 313 TPIFRELGRR----RGFDRAARLLQKMARR 338



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 4/204 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  L+  LC+  KID+A   +  MA         T++ ++  L + +R+  A   
Sbjct: 33  PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEF 92

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M E    PD+  YN LL   C  G +     +   ME   +     TY  L+   C+
Sbjct: 93  FETMPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 148

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             + E A+ LL+ M     S    +Y  ++  L +     QA +          K D   
Sbjct: 149 MCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVT 208

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L   L   +R +EA  +L  M
Sbjct: 209 YNTLIHGLCVKQRLHEAKDLLTVM 232



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 72/161 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +   L + +  D A R++  MA  G   + +T+      L   K    A+     M 
Sbjct: 312 YTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRML 371

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  + PD+ AYN L+  +C    L     +++ M++  L  +  TY+ LV   CR G+VE
Sbjct: 372 EQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVE 431

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
               LL  MV  G+    +T++ ++  L  +G    A  F+
Sbjct: 432 AIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFL 472



 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 55/138 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y      L   K+   A R    M E G     + ++ ++    +  R++ A  +
Sbjct: 342 PNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKM 401

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  + P++  YN L+  +C KG + A   +L  M       D  T+  LV G   
Sbjct: 402 VRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFM 461

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G+ + A+  L   +  G
Sbjct: 462 VGQADAAYSFLNLAMSQG 479


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + +L+  LC + K ++   +   M   G   + + F+ IL  L +  R+ E   L
Sbjct: 98  PNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRL 157

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ ++ + V PD+ +YN L+  +C  G +   S +L+ M    L  ++ +Y+ L+ G C+
Sbjct: 158 VDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCK 217

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AGR++ A+ L R+M+ +G +    TY  ++  L +   +++A
Sbjct: 218 AGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEA 259



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 81/181 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++T++  LCK  ++ E  R+VD +   G     I+++ ++        ++EA  L
Sbjct: 133 PNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKL 192

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M  + + P+  +YN LL  YC  G + +   + +KM    +     TY+ ++ G  +
Sbjct: 193 LEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQ 252

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R  EA  L   M++ G      TY  ++  L +     +A K       + ++L+   
Sbjct: 253 TKRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIIT 312

Query: 281 F 281
           F
Sbjct: 313 F 313



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T++  LCK   +DEA ++   +   G  L+ ITF  ++  L +G R E+A  L   + 
Sbjct: 278 YNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIP 337

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+  Y  +      +G+L     +   ME+     +++  +ALV      G + 
Sbjct: 338 ANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDIS 397

Query: 226 EAFVLLRRMVDDGQSVLYST 245
            A   L ++ +   SV  ST
Sbjct: 398 RAGAYLSKLDERNFSVEAST 417



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           + E   L+ +M    +SP+   +N   +AY   G +     +  KM +  L  DA +Y A
Sbjct: 11  LSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGA 70

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDG 238
           L+   C+ GRV++A V   +M+++G
Sbjct: 71  LIDALCKLGRVDDAEVKFNQMINEG 95



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 63/157 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+   CK  +ID A  +   M   G     +T++ IL  L + KR  EA  L
Sbjct: 203 PNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKEL 262

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M        +  YN +L   C    +     + + +  + L  +  T+  ++    +
Sbjct: 263 YLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLK 322

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR E+A  L   +  +G      TY  V   L+  G
Sbjct: 323 GGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEG 359



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 52/120 (43%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           + E   ++++M   G   +   F+   S   +   +++A  +   M++  +SPD  +Y  
Sbjct: 11  LSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGA 70

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+ A C  G +        +M  E +  +   + +LV G C   + E+   L   M++ G
Sbjct: 71  LIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVG 130


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 117/261 (44%), Gaps = 9/261 (3%)

Query: 49  RDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD----KGF-PRK 103
           R +E  + LL    R C  +  +    I    N    + +L R L  ++    KG  P  
Sbjct: 268 RVVEAHQLLLQMELRGCIPDVISYSTVI----NGYCQVGELQRVLKLIEEMQIKGLKPNP 323

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
             Y+ +I  LCK  K+ EA RV+  M   G     + +  ++    +   +  A+ L + 
Sbjct: 324 YTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDE 383

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M++ ++SPD   Y  ++   C  G +     +  +M  ++L  D  TY AL+ G C+ G+
Sbjct: 384 MQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGK 443

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           ++EAF L  +M+  G +    TY  +   L + G    A + +     + ++L+   + S
Sbjct: 444 MKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNS 503

Query: 284 LGSKLIGLERFNEANFILKEM 304
           L + L      ++A  ++K+M
Sbjct: 504 LVNGLCKAGNIDQAVKLMKDM 524



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 109/229 (47%), Gaps = 7/229 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L +      +++T   LL++  R        T+N + N       +    + 
Sbjct: 461 PNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKL 520

Query: 93  LARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +  ++  GF P    Y TL+   CK +++  A  ++  M +     + +TF+ +++    
Sbjct: 521 MKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCM 580

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              +E+   L++ M E  + P+ T YN L+  YC + N+ AT+ + + M  + +  D  T
Sbjct: 581 SGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNT 640

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           Y+ L+ G C+A  ++EA+ L R MV  G ++  S+Y     AL++ G+Y
Sbjct: 641 YNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSY----NALIK-GFY 684



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%)

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
           L  I  AL+V     E G   +  +++ I   L +  R+ EA  L+  M+     PD+ +
Sbjct: 231 LDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVIS 290

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           Y+ ++  YC  G L     ++++M+ + L  +  TY+ ++L  C+ G+V EA  +LR M+
Sbjct: 291 YSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMI 350

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
            +G +     Y  ++    +LG  + A +       R I  D   + ++   L    R  
Sbjct: 351 SEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVM 410

Query: 296 EANFILKEM 304
           EA+ +  EM
Sbjct: 411 EADKLFHEM 419



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 2/168 (1%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           ++Y+ +   LC+L ++ EA +++  M   G     I++  +++   +   ++    L+E 
Sbjct: 254 ASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEE 313

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+   + P+   YN ++   C  G +     VL++M  E +  D   Y  L+ G C+ G 
Sbjct: 314 MQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN 373

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVC 269
           V  A+ L   M     S  + TY  V+  L + G   +A K    MVC
Sbjct: 374 VSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVC 421



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 15/174 (8%)

Query: 74  NFITNTENSLSVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEA 122
           +FIT T    +V+  LC+T  +   DK F         P +  Y  LI   CK  K+ EA
Sbjct: 392 DFITYT----AVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEA 447

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
             + + M + G   + +T+  +   L +   ++ A  L+  M    +  ++  YN L+  
Sbjct: 448 FSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNG 507

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
            C  GN+     ++K ME      DA TY  L+   C++  +  A  LLR+M+D
Sbjct: 508 LCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLD 561



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LC+  ++ EA ++   M         +T+  ++    +  +M+EA+ L
Sbjct: 391 PDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSL 450

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M ++ ++P++  Y  L    C  G +   + +L +M  + L  +  TY++LV G C+
Sbjct: 451 HNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCK 510

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           AG +++A  L++ M   G      TY  +M A
Sbjct: 511 AGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDA 542


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 120/296 (40%), Gaps = 53/296 (17%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L++ L  + LI ++  +    ++ G  P+  T   ++ LVN       +     L+   
Sbjct: 396 TLIKGLSNQGLILEAAQLASEMSEKGLIPEVQT---FNILVNGLCKMGCVSDADGLVKVM 452

Query: 62  ARDCCFNTANTFNFITN-------TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRL 113
                F    TFN + +        EN+L +L         +D G  P    Y++L+  L
Sbjct: 453 ISKGYFPDIFTFNILIHGYSTQLKMENALEILD------VMMDNGVDPDVYTYNSLLNGL 506

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           CK  K ++ +     M E G   +  TF+ +L  L R  ++++A GL+E MK   V+PD 
Sbjct: 507 CKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDA 566

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEE-------------------EK----------- 203
             +  L+  +C  G+L     + +KMEE                   EK           
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQ 626

Query: 204 ------LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
                 LG D  TY  +V G C+ G V+  +  L  M+++G     +T   V+  L
Sbjct: 627 EMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCL 682



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 98/207 (47%), Gaps = 6/207 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD--- 88
           +P    Y+ L+    ++  +     L ++ +         TFN + N    +  +SD   
Sbjct: 388 KPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADG 447

Query: 89  LCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           L + +  + KG FP    ++ LI       K++ AL ++D+M + G      T++ +L+ 
Sbjct: 448 LVKVM--ISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNG 505

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L +  + E+     + M E   +P+L  +N LL + C    L    G+L++M+ + +  D
Sbjct: 506 LCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPD 565

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRM 234
           A T+  L+ G C+ G ++ A+ L R+M
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKM 592



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 5/157 (3%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY T++G   +    DE   +   M   G  L   TF+ +L VL +   ++E   L++ +
Sbjct: 183 AYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKV 242

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V P+L  YN+ +   C KG L A   ++ ++ ++    D  TY+ L+ G C+  + 
Sbjct: 243 IKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKF 302

Query: 225 EEAFVLLRRMVDDG---QSVLYSTY--AHVMGALLRL 256
           +EA V L ++V++G    S  Y+T    +  G +++L
Sbjct: 303 QEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQL 339



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 92/206 (44%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S ++ L+  LCK   + E  +++D + + G   +  T++  +  L +   ++ A  ++  
Sbjct: 217 STFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGR 276

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           + +    PD+  YNYL+   C           L K+  E L  D+ TY+ L+ G C+ G 
Sbjct: 277 LIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGM 336

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           V+ A  +L   V +G      TY  ++  L   G   +A+       G+ IK +  L+ +
Sbjct: 337 VQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNT 396

Query: 284 LGSKLIGLERFNEANFILKEMNKRDL 309
           L   L       EA  +  EM+++ L
Sbjct: 397 LIKGLSNQGLILEAAQLASEMSEKGL 422



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 1/190 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KG  P    Y+TLI  L     I EA ++   M+E G      TF+ +++ L +   +
Sbjct: 383 LGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCV 442

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A GL++VM      PD+  +N L+  Y  +  +     +L  M +  +  D  TY++L
Sbjct: 443 SDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSL 502

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+  + E+     + MV+ G +    T+  ++ +L R     +A+  +     + +
Sbjct: 503 LNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSV 562

Query: 275 KLDTELFGSL 284
             D   FG+L
Sbjct: 563 NPDAVTFGTL 572



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 78/167 (46%), Gaps = 1/167 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G  P   ++   +   C+  +   ALR+++ M+  G  ++ + +  ++         +
Sbjct: 139 DRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKD 198

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           E + L   M    VS  L+ +N LL   C KG++     +L K+ +  +  +  TY+  +
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFI 258

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G C+ G ++ A  ++ R++D G      TY +++  L +   + +A
Sbjct: 259 QGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEA 305



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 3/149 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+  I  LC+  ++D A+R+V  + + G     +T++ ++  L +  + +EA  
Sbjct: 248 LPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEV 307

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +  +    + PD   YN L+  YC  G +     +L          D  TY +L+ G C
Sbjct: 308 YLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLC 367

Query: 220 RAGRVEEAFVLLRRMVDDG---QSVLYST 245
             G    A  L    +  G     +LY+T
Sbjct: 368 HEGETNRALALFNEALGKGIKPNVILYNT 396



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 60/138 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   CK   +  A R++      GF     T+  ++  L        A  L
Sbjct: 319 PDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALAL 378

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                   + P++  YN L+     +G +   + +  +M E+ L  + +T++ LV G C+
Sbjct: 379 FNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCK 438

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G V +A  L++ M+  G
Sbjct: 439 MGCVSDADGLVKVMISKG 456



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 95/250 (38%), Gaps = 28/250 (11%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKR 61
           L+    T+  +  ++ +      +G  PD  T ++  + L   + +E  +ET + ++ K 
Sbjct: 467 LIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKG 526

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTL 109
               C     TFN +         L  LCR   +LDK              P    + TL
Sbjct: 527 ----CAPNLFTFNIL---------LESLCR-YHKLDKALGLLEEMKNKSVNPDAVTFGTL 572

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGF-GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           I   CK   +D A  +   M E      S  T++ I+   T    +  A  L + M +  
Sbjct: 573 IDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC 632

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD   Y  ++  +C  GN+      L +M E        T   ++   C   RV EA 
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAA 692

Query: 229 VLLRRMVDDG 238
            ++ RMV  G
Sbjct: 693 GIIHRMVQKG 702



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/140 (20%), Positives = 63/140 (45%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+ EA+ V + M       +  +++ I+S+L      ++A  +   M++  ++PD+ ++ 
Sbjct: 91  KVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
             + ++C      A   +L  M  +    +   Y  +V G       +E + L  +M+  
Sbjct: 151 IRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLAS 210

Query: 238 GQSVLYSTYAHVMGALLRLG 257
           G S+  ST+  ++  L + G
Sbjct: 211 GVSLCLSTFNKLLHVLCKKG 230



 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 11/174 (6%)

Query: 95  RLDKGFPRK-SAYDTLIGRLC---KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           R + GF    S Y ++I +L    K + ++E L  VD+    G  +    +   +    R
Sbjct: 31  RKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVL--VDMRQNVGNHMLEGVYVGAMKNYGR 88

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +++EA  + E M      P + +YN +++     G       V  +M +  +  D  +
Sbjct: 89  KGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYS 148

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +   +   CR  R   A  LL  M   G  +    Y  V+G     G+Y +  K
Sbjct: 149 FTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVG-----GFYEENFK 197


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y  LI  LC+  +IDEA+ V+ +M E        ++ P++S L +  R++ A G+
Sbjct: 320 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 379

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M+ M      PD+  YN +L A C  GN      +  K+       +  +Y+ ++     
Sbjct: 380 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 439

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            G    A  ++  M+  G      TY  ++  L R G   +A+
Sbjct: 440 CGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAI 482



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 94/199 (47%), Gaps = 20/199 (10%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           ++S LCR   R+D+              P   +YD LI  LCK  ++D A+ ++D M   
Sbjct: 328 LISSLCR-FGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISN 386

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G     + ++ IL+ L +     +A  +   ++ +   P++++YN +++A    G+ +  
Sbjct: 387 GCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRA 446

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            G++  M  + +  D  TY++L+   CR G VEEA  LL  M   G      +Y  V+  
Sbjct: 447 LGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLG 506

Query: 253 LLR-------LGYYAQAVK 264
           L +       +G +A+ ++
Sbjct: 507 LCKVRRIDDAIGMFAEMIE 525



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 98/209 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ +I   CK+ +I+ A +V++ M   GF    +T++ ++  L   +++  A  +
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTV 204

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ +      P +  Y  L+ A   +G +     +L++M    L  D  TY+A++ G C+
Sbjct: 205 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 264

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G VE A  L+  +   G      +Y  ++ A L  G + +  K V     R  + +   
Sbjct: 265 EGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 324

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L S L    R +EA  +LK M +++L
Sbjct: 325 YSILISSLCRFGRIDEAISVLKVMIEKEL 353



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ L+       K DE  ++V  M   G   + +T+  ++S L R  R++EA  +
Sbjct: 285 PDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISV 344

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++VM E  ++PD  +Y+ L++A C +G L    G++  M       D   Y+ ++   C+
Sbjct: 345 LKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCK 404

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G   +A  +  ++   G     S+Y  ++ AL   G  ++A+  V     + I  D   
Sbjct: 405 NGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEIT 464

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + SL S L       EA  +L +M +   +
Sbjct: 465 YNSLISCLCRDGLVEEAIGLLDDMEQSGFR 494



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 81/175 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T++  LCK    ++AL + + +   G   +  +++ ++S L        A G
Sbjct: 389 LPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALG 448

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M    + PD   YN L++  C  G +    G+L  ME+        +Y+ ++LG C
Sbjct: 449 MVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLC 508

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +  R+++A  +   M++ G     +TY  ++  +   G+  +A++       RD+
Sbjct: 509 KVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDV 563



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 1/208 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P    Y+ +IG LC  +K+  AL V+D +       + IT+  ++        + E
Sbjct: 176 RGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINE 235

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L+E M    + PD+  YN ++   C +G +   + ++  +  +    D  +Y+ L+ 
Sbjct: 236 AMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLR 295

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
                G+ +E   L+  M   G      TY+ ++ +L R G   +A+  + V   +++  
Sbjct: 296 AFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTP 355

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           DT  +  L S L    R + A  I+  M
Sbjct: 356 DTYSYDPLISALCKEGRLDLAIGIMDYM 383



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 12/205 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSV 85
           P +  YD L++A   E  L+    +++    + C      +N I        N   +L +
Sbjct: 355 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 414

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
            + L     R     P  S+Y+T+I  L        AL +V  M   G     IT++ ++
Sbjct: 415 FNKL-----RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLI 469

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           S L R   +EEA GL++ M++    P + +YN +L   C    +    G+  +M E+   
Sbjct: 470 SCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCR 529

Query: 206 ADARTYDALVLGACRAGRVEEAFVL 230
            +  TY  L+ G   AG   EA  L
Sbjct: 530 PNETTYILLIEGIGFAGWRTEAMEL 554



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 1/165 (0%)

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
           R++    L+ R CK  K +E+L  ++ +   G+    I    ++      K +E+A  +M
Sbjct: 77  RETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM 136

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           E++ E    PD+ AYN +++ +C    + A + VL +M+      D  TY+ ++   C  
Sbjct: 137 EIL-ESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR 195

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            ++  A  +L +++ D       TY  ++ A +  G   +A+K +
Sbjct: 196 RKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLL 240



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           LD   P    Y  LI        I+EA+++++ M   G      T++ I+  + +   +E
Sbjct: 210 LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVE 269

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L+  +      PD+ +YN LL A+  +G       ++ +M       +  TY  L+
Sbjct: 270 RAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILI 329

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              CR GR++EA  +L+ M++   +    +Y  ++ AL + G
Sbjct: 330 SSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEG 371


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 87/167 (52%), Gaps = 5/167 (2%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++KG  P    +  LI  LCK  ++ EA ++++ M  GG   + +T+  +++ L +  ++
Sbjct: 259 IEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQV 318

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A+ L ++M+     P++  +N L+   C    +     +  +M E     D  TY++L
Sbjct: 319 DDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSL 378

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQS----VLYSTYAHVMGALLRLG 257
           + G C++ +V+EAF L + + + G S    V YST  H   AL R+ 
Sbjct: 379 IDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMA 425



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 10/250 (4%)

Query: 10  KFLIPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRA--RDCC 66
           KF   Q +L  R     G  PD  T S   D L      E+    +  ++ +     D  
Sbjct: 141 KFDEAQGML--REMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAA 198

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRV 125
           F T      + N  NS+ + S +   +  + KGF P    ++ +I   CK K +D A ++
Sbjct: 199 FET--IIQRLCNKYNSVELASKVLGVV--IAKGFTPTVLMFNLVINGFCKAKDLDSAYKL 254

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           +++M E G   +  TF  +++ L +  R+ EA  L+E M     SP++  Y+ ++   C 
Sbjct: 255 LEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCK 314

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           +G +     + + ME      +  T++ L+ G C+A R+EEA  L  RM + G +    T
Sbjct: 315 QGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIIT 374

Query: 246 YAHVMGALLR 255
           Y  ++  L +
Sbjct: 375 YNSLIDGLCK 384



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 97/190 (51%), Gaps = 11/190 (5%)

Query: 57  LLNKRARDCCFNTANTFNFI-------TNTENSLSVLSDLCRTLARLDKGF-PRKSAYDT 108
           L +  A   C + A  +N +       +  + +L+VL    + + + D+ F P  SA D 
Sbjct: 500 LFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLE---QVIDKRDRKFNPSSSAVDA 556

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  LC++ K D+A +++  M+E GF  +  +++ +LS L+R +R +EA  + E M    
Sbjct: 557 LVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAG 616

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
            +P+++  N +++  C    +     ++++M +     D  T + L+ G C++GR + A 
Sbjct: 617 PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLAR 676

Query: 229 VLLRRMVDDG 238
            LL  M + G
Sbjct: 677 KLLEEMTEAG 686



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 1/207 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRMEEAWG 159
           P    + TLI  LCK    ++A RV++ + + G G S   F  I+  L  +   +E A  
Sbjct: 159 PDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASK 218

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ V+     +P +  +N ++  +C   +L +   +L+ M E+    +  T+  L+ G C
Sbjct: 219 VLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLC 278

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +A RV EA  LL +MV  G S    TY+ V+  L + G    A +   +   R+   +  
Sbjct: 279 KANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVV 338

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
               L   L   +R  EA  +   M +
Sbjct: 339 THNILIDGLCKAKRIEEARQLYHRMRE 365



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVD 127
           A T++ + +   +L  ++D CR  + L DKGF P  + Y +LI   CK  +  E + +V+
Sbjct: 408 AVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVE 467

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            MA  GF     T   +L  L  G   E A  L + M     + D   YN ++       
Sbjct: 468 EMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARAS 527

Query: 188 NLTATSGVLKKM---EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
                  VL+++    + K    +   DALV   C+ G+ ++A  LL +M + G +   S
Sbjct: 528 KHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVS 587

Query: 245 TYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
           +Y  ++  L RL  + +A +    MV  G   ++ T     + S L    + ++A  +++
Sbjct: 588 SYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEIST--VNVVISWLCSAAKVDDAYELVQ 645

Query: 303 EMNK 306
            M+K
Sbjct: 646 RMSK 649



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/333 (20%), Positives = 130/333 (39%), Gaps = 47/333 (14%)

Query: 17  VLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI 76
           V++ + FT        PT   ++ ++N     +DL++   LL       C     TF  +
Sbjct: 222 VVIAKGFT--------PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTIL 273

Query: 77  TNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
                  + + +  + L ++  G   P    Y T+I  LCK  ++D+A  +  +M     
Sbjct: 274 ITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNC 333

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC---------- 184
             + +T + ++  L + KR+EEA  L   M+E   +PD+  YN L+   C          
Sbjct: 334 PPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQ 393

Query: 185 -FK-------------------------GNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            F+                         G +     +   + ++    D  TY +L+L  
Sbjct: 394 LFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEY 453

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+  R  E   L+  M   G     +T + V+G L    +  +A++       R    D 
Sbjct: 454 CKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDA 513

Query: 279 ELFGSLGSKLIGLERFNEANFILKE-MNKRDLK 310
            ++  +   +    + ++A  +L++ ++KRD K
Sbjct: 514 LIYNLVVEGMARASKHDKALAVLEQVIDKRDRK 546



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 91/179 (50%), Gaps = 5/179 (2%)

Query: 39  DDLVNAAGHERDLETVRYLLNKRARDCCFN-TANTFNFITNTENSLSVLSDLCRTLARL- 96
           + +  A+ H++ L  +  +++KR R   FN +++  + +  +   +    D  + L ++ 
Sbjct: 521 EGMARASKHDKALAVLEQVIDKRDRK--FNPSSSAVDALVESLCQVGKTDDAKQLLHKMS 578

Query: 97  DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           ++GF    S+Y+ L+  L +L++ DEA +V + M   G      T + ++S L    +++
Sbjct: 579 ERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVD 638

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +A+ L++ M ++   PD+   N L+  YC  G       +L++M E  L  +  T+D L
Sbjct: 639 DAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 1/139 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P K  Y  LI        +D A+++++ M   GF  +A+    ++  L    R+ EA  
Sbjct: 54  MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALE 113

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M +   +PD+  Y  L+ A C  G      G+L++M  +    D  T+  L+ G C
Sbjct: 114 HFRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLC 172

Query: 220 RAGRVEEAFVLLRRMVDDG 238
           + G  E+AF +L  ++  G
Sbjct: 173 KFGSEEQAFRVLEDVIQRG 191



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 1/175 (0%)

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
           G +  + +  L +L R  R +EA  L          P+   Y  L+  +   G+L     
Sbjct: 19  GHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQ 78

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +L++M+      +A  +  L+ G C AGRV EA    R M  D    +  TY  ++ AL 
Sbjct: 79  LLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVM-TYTALVHALC 137

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + G + +A   +     +    DT  F +L   L       +A  +L+++ +R +
Sbjct: 138 KAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGM 192


>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 2/199 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL-SAITFHPILSVLTRGKRMEEAWG 159
           P    ++ L+   C+   ID A  VV  M    +   + IT+  ++  L R  R++EA+ 
Sbjct: 271 PNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFE 330

Query: 160 LMEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
           L E M  + ++ PD   YN L+  +C +G       V++ M+      +   Y ALV G 
Sbjct: 331 LFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGL 390

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+AG++++A  +L  M   G      TY  ++    R G   +A++ +      D + DT
Sbjct: 391 CKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADT 450

Query: 279 ELFGSLGSKLIGLERFNEA 297
             F  +   L    RF+EA
Sbjct: 451 VTFNVILGGLCREGRFDEA 469



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 76/159 (47%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P    Y+ LI   C+  K D A  V++ M   G   +   +  ++  L +  ++++
Sbjct: 339 DQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQD 398

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A G++  MK   + PD   Y  L+  +   G +     +L +M+E    AD  T++ ++ 
Sbjct: 399 AKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILG 458

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           G CR GR +EA  ++ ++   G  +   +Y  V+ +L +
Sbjct: 459 GLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQ 497



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 1/169 (0%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILSVLTRGKRMEEA 157
            +P    Y TL+  LC+  ++ EA  + + M ++       +T++ +++   R  + + A
Sbjct: 305 SYPNVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRA 364

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++E MK     P++  Y+ L+   C  G L    GVL +M+   L  DA TY +L+  
Sbjct: 365 RNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINF 424

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             R G+++EA  LL  M ++       T+  ++G L R G + +A+  +
Sbjct: 425 FSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDMI 473



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 72/157 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK  K+ +A  V+  M   G    AIT+  +++  +R  +++EA  L
Sbjct: 378 PNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIEL 437

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MKE     D   +N +L   C +G       +++K+ ++ +  +  +Y  ++    +
Sbjct: 438 LTEMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQ 497

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              + +A  LL  M+  G    Y+T   ++  L + G
Sbjct: 498 NCELRKANKLLGLMLSRGFVPHYATSNELLVRLCKEG 534



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 5/154 (3%)

Query: 162 EVMKEIRVS----PDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVL 216
           EV+KE+R S    P++  Y+ L+   C  G L     + ++M  ++++  D  TY+ L+ 
Sbjct: 294 EVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLIN 353

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G CR G+ + A  ++  M ++G       Y+ ++  L + G    A   +       +K 
Sbjct: 354 GFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKP 413

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           D   + SL +      + +EA  +L EM + D +
Sbjct: 414 DAITYTSLINFFSRNGQIDEAIELLTEMKENDCQ 447



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 96/235 (40%), Gaps = 7/235 (2%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN-KRARDCCFNTANTFNFITNTENS 82
           +K    PD  T   Y+ L+N    E   +  R ++   +   CC N  N ++ + +    
Sbjct: 337 SKDQIVPDPLT---YNVLINGFCREGKADRARNVIEFMKNNGCCPNVFN-YSALVDGLCK 392

Query: 83  LSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
              L D    LA +      P    Y +LI    +  +IDEA+ ++  M E       +T
Sbjct: 393 AGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVT 452

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ IL  L R  R +EA  ++E + +  V  +  +Y  +L +      L   + +L  M 
Sbjct: 453 FNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANKLLGLML 512

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
                    T + L++  C+ G   +A   L  +VD G    + ++  ++  + R
Sbjct: 513 SRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMGFQPQHDSWELLIDLICR 567



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 61/131 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++ ++G LC+  + DEAL +++ + + G  L+  ++  +L+ LT+   + +A  L+ +M
Sbjct: 452 TFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANKLLGLM 511

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P     N LL   C +G     +  L  + +        +++ L+   CR  ++
Sbjct: 512 LSRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMGFQPQHDSWELLIDLICRDRKL 571

Query: 225 EEAFVLLRRMV 235
              F LL  +V
Sbjct: 572 LYVFELLDELV 582


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 100/204 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI   CK  K+ EA  V+ +M +    L  +T++ ++      K++ +A  L
Sbjct: 266 PNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSL 325

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             VM +  V+PD+ +Y+ ++  +C    +     + ++M  +++  +  TY++LV G C+
Sbjct: 326 FNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCK 385

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR   A  L+  M D GQ     TY  ++ A+ +  +  +A+  +     + I+ D   
Sbjct: 386 SGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFT 445

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L + L  + R ++A  + +++
Sbjct: 446 YTVLINGLCKVGRLDDAQKVFEDL 469



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y++L+  LCK  +   AL +VD M + G   + IT++ IL  + +   +++A  
Sbjct: 370 FPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIV 429

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  +KE  + PD+  Y  L+   C  G L     V + +  +    +  TY +L+ G C
Sbjct: 430 LLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFC 489

Query: 220 RAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
             G  +E   +L +M D+G    ++ Y    H
Sbjct: 490 NKGFFDEGLAMLSKMKDNGCIPNAITYEILIH 521



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 80/163 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  +I   CK+K +DEA+++ + M       + +T++ ++  L +  R   A  L
Sbjct: 336 PDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALEL 395

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +     ++  YN +L A C   ++     +L K++E+ +  D  TY  L+ G C+
Sbjct: 396 VDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCK 455

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR+++A  +   ++  G S    TY  ++      G++ + +
Sbjct: 456 VGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGL 498



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 94/205 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y TLI  LC++ +   A++++  +       + + +  I+  + + K + +A+ L   M
Sbjct: 165 SYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEM 224

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
              R+SPD+  Y+ L++ +C  G L     +  +M  + +  +  T+  L+ G C+ G+V
Sbjct: 225 VSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKV 284

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EA  +L  M+     +   TY  +M     +    +A     V   R +  D   +  +
Sbjct: 285 REAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIM 344

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            +    ++  +EA  + +EM+ + +
Sbjct: 345 INGFCKIKMVDEAMKLFEEMHCKQI 369



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 114/271 (42%), Gaps = 17/271 (6%)

Query: 37  YYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL 96
           Y+ D V A G + D  +   L+N   R            +  T+ ++ +L  +   L R 
Sbjct: 149 YFHDKVVAQGFQLDQVSYGTLINGLCR------------VGETKAAVQLLRRVDGKLVR- 195

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
               P    Y T+I  +CK K +++A  +   M         +T+  ++S      +++ 
Sbjct: 196 ----PNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKY 251

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L   M    ++P++  ++ L+  +C +G +     VL  M ++ +  D  TY++L+ 
Sbjct: 252 AVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMD 311

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C   +V +A  L   M   G +    +Y+ ++    ++    +A+K       + I  
Sbjct: 312 GYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFP 371

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +   + SL   L    R + A  ++ EM+ R
Sbjct: 372 NVVTYNSLVDGLCKSGRTSCALELVDEMHDR 402



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 77/167 (46%)

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           AI F  IL  L + K+ + A  L + M+   + PD    N L+  +   G++  +  V  
Sbjct: 58  AIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFA 117

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           K+ ++    DA T+  L+ G C  G V +A     ++V  G  +   +Y  ++  L R+G
Sbjct: 118 KILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVG 177

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
               AV+ +    G+ ++ +  ++ ++   +   +  N+A  +  EM
Sbjct: 178 ETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEM 224



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 97  DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G P     Y++++  +CK   +D+A+ ++  + E G      T+  +++ L +  R++
Sbjct: 401 DRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLD 460

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  + E +     SP++  Y  L+  +C KG       +L KM++     +A TY+ L+
Sbjct: 461 DAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILI 520

Query: 216 LGACRAGRVEEAFVLLRRMVDDG 238
                    ++A  LLR M+  G
Sbjct: 521 HSLFEKDENDKAEKLLREMIARG 543



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 7/155 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  ++G L K K+   AL +   M   G     IT + +++  ++   ++ ++ +
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              + +    PD   +  L+   C KG +        K+  +    D  +Y  L+ G CR
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCR 175

Query: 221 AGRVEEAFVLLRRMVDDGQ-----SVLYSTYAHVM 250
            G  + A  LLRR+  DG+      V+YST    M
Sbjct: 176 VGETKAAVQLLRRV--DGKLVRPNVVMYSTIIDSM 208


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 77/166 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y +LI        IDEA  + D+M   G   + IT++ ++  L +  ++  A  
Sbjct: 732 LPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVN 791

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   ++   +SP+   YN L+  YC +G  T    + +KM EE +     TY  L+ G C
Sbjct: 792 LFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLC 851

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             G +EEA  LL +M+++     Y TY  ++   ++ G   +  K 
Sbjct: 852 TQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKL 897



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 98/202 (48%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY  +I   C+  ++D+A RV + M + G  ++   ++ +++ L +  RMEE   +++ M
Sbjct: 326 AYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM 385

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +++ + PD  +YN L+  YC +G++     + + M    L A   TY+ L+ G C    +
Sbjct: 386 EDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAI 445

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++A  L   M+  G +    + + ++  L + G   QA+        R +  +   F ++
Sbjct: 446 DDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTV 505

Query: 285 GSKLIGLERFNEANFILKEMNK 306
            + L  + R  EA  +L  M +
Sbjct: 506 INGLCKIGRMAEAEELLDRMKE 527



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 81/161 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ +I  LCK  +I +A  + + +    F     T+  ++        ++EA+ L +VM 
Sbjct: 703 WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVML 762

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++P++  YN L+   C  G L+    +  K++ + +  +  TY+ L+   C+ G+  
Sbjct: 763 SAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTT 822

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           EAF L ++MV++G      TY+ ++  L   GY  +A+K +
Sbjct: 823 EAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLL 863



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 118/284 (41%), Gaps = 6/284 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR- 91
           P    Y+ L++    E  +     +     R+    T  T+N +     SL  + D  R 
Sbjct: 392 PDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRL 451

Query: 92  TLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
               L +G  P + +  TL+  L K  K ++AL +       G   + ITF+ +++ L +
Sbjct: 452 WFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK 511

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             RM EA  L++ MKE+R  PD   Y  L   YC  G L   + ++ KME          
Sbjct: 512 IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEM 571

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK--FVMV 268
           +++ + G   A +  +   +   M   G S    TY  ++    + G   +A    F MV
Sbjct: 572 FNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMV 631

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
             G  +  +  +  +L S      + +EAN +L+++   D+  G
Sbjct: 632 NNG--MNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPG 673



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 79  TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE-GGFGL 136
           TE++  +L  L R      KG  P    Y  L+   CK  +++EA RVV  M E G   +
Sbjct: 269 TEDARRILESLQR------KGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVV 322

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             + +  +++   +  RM++A  +   M++  +  +L  YN ++   C  G +     VL
Sbjct: 323 DEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVL 382

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           ++ME+  +  D  +Y+ L+ G CR G + +AF + R MV +G +    TY
Sbjct: 383 QEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTY 432



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 114/270 (42%), Gaps = 13/270 (4%)

Query: 2   SLLRKLP--TKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN 59
           +LL  LP   + L P    V R FT S        +  +D L+ A      L +   + +
Sbjct: 121 ALLSSLPPHAEPLFPHLAEVYRDFTFS--------AVSFDLLLRAHADAGQLSSALNVFD 172

Query: 60  KRARDCCFNTANTFNFITN--TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLK 117
              +  C  +  + N + N   ++    ++ +     R+    P +     +    C+  
Sbjct: 173 GMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDG 232

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           ++ +A+  V+ M   G  ++ + +H ++         E+A  ++E ++   +SP++  Y 
Sbjct: 233 RVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYT 292

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
            L+  YC  G +     V+K+M+E   +  D   Y  ++ G C+ GR+++A  +   M D
Sbjct: 293 LLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRD 352

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G  V    Y  ++  L +LG   +  K +
Sbjct: 353 AGIHVNLFVYNTMINGLCKLGRMEEVQKVL 382



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 78/162 (48%), Gaps = 1/162 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY  ++   C +   ++A R+++ +   G   + +T+  ++    +  RMEEA  +++ M
Sbjct: 255 AYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEM 314

Query: 165 KEI-RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           KE   +  D  AY  ++  YC +G +   + V  +M +  +  +   Y+ ++ G C+ GR
Sbjct: 315 KETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGR 374

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +EE   +L+ M D G      +Y  ++    R G   +A + 
Sbjct: 375 MEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEM 416



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 69/148 (46%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           +ID+   VVD +A+G    + + ++ I+  L +  R+ +A  L E ++  R  PD   Y+
Sbjct: 680 EIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYS 739

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+      G++     +   M    L  +  TY++L+ G C++G++  A  L  ++   
Sbjct: 740 SLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSK 799

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           G S    TY  ++    + G   +A K 
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKL 827



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 1/156 (0%)

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R  R+ +A   +E M+ + +  +L AY+ ++  YC  G       +L+ ++ + L  +  
Sbjct: 230 RDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVV 289

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST-YAHVMGALLRLGYYAQAVKFVMV 268
           TY  LV G C+ GR+EEA  +++ M + G  V+    Y  ++    + G    A +    
Sbjct: 290 TYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNE 349

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                I ++  ++ ++ + L  L R  E   +L+EM
Sbjct: 350 MRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM 385



 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 66/173 (38%)

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
           F  SA++F  +L       ++  A  + + M ++   P L + N LL      G+    +
Sbjct: 144 FTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAA 203

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            V  +M    +  D  T   +    CR GRV +A   +  M   G  V    Y  VM   
Sbjct: 204 MVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCY 263

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             +G+   A + +     + +  +   +  L        R  EA  ++KEM +
Sbjct: 264 CGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKE 316


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 35/245 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +IG  C+   + +ALRV D M   G     +T++ +L+ L + +R+ +A GL
Sbjct: 329 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 388

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  V PDL  +  L+  YC +G L     +   M  ++L  D  TY+ L+ G CR
Sbjct: 389 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 448

Query: 221 A-----------------------------------GRVEEAFVLLRRMVDDGQSVLYST 245
                                               G+VE+AF  L  M++ G      T
Sbjct: 449 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT 508

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y  ++    R G  ++  KF+       +  D   + +L    I  ++ ++A  +L  M 
Sbjct: 509 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMME 568

Query: 306 KRDLK 310
           K  ++
Sbjct: 569 KEKVQ 573



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 125/321 (38%), Gaps = 59/321 (18%)

Query: 1   MSLLRKLPTKFLIPQSVLVTR---SFTKSGAFPDE-------------PTSAYYDDLVNA 44
           M+ LR++    L+P  V+ T     F ++G   D              P    Y+ L+N 
Sbjct: 316 MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 375

Query: 45  AGHERDLETVRYLLNK-RARD-----CCFNTA--------------NTFNFITN------ 78
              ER L     LLN+ R R      C F T                 F+ + N      
Sbjct: 376 LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 435

Query: 79  --TENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALR 124
             T N+L  +  +CR    LDK             FP    Y  LI   C+  ++++A  
Sbjct: 436 IVTYNTL--IDGMCRQ-GDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 492

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
            +D M   G   + +T++ I+    R   + +    ++ M   +VSPDL  YN L+  Y 
Sbjct: 493 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYI 552

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            +  +     +L  ME+EK+  D  TY+ L+ G    G V+EA  +  +M   G      
Sbjct: 553 KEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRY 612

Query: 245 TYAHVMGALLRLGYYAQAVKF 265
           TY  ++   +  G   +A + 
Sbjct: 613 TYMSMINGHVTAGNSKEAFQL 633



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L++    + DL+    L +       F    T++ + ++      + D    
Sbjct: 434 PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF 493

Query: 93  LARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  + +KG  P    Y+++I   C+   + +  + +  M         IT++ ++    +
Sbjct: 494 LDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIK 553

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +M +A+ L+ +M++ +V PD+  YN L+  +   GN+     + +KM  + +  D  T
Sbjct: 554 EDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYT 613

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDG 238
           Y +++ G   AG  +EAF L   M+  G
Sbjct: 614 YMSMINGHVTAGNSKEAFQLHDEMLQRG 641



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 90/208 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    ++ ++    +    + A+ +VD M   G     +T++ +L  L R    ++AW 
Sbjct: 188 FPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWE 247

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M +  V+PD+ ++  L+  +C  G +     + K+M    +  D  ++  L+    
Sbjct: 248 VFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFA 307

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R G+++ A   LR M   G       Y  V+G   R G  + A++      G     D  
Sbjct: 308 RRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVV 367

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
            + +L + L    R  +A  +L EM +R
Sbjct: 368 TYNTLLNGLCKERRLLDAEGLLNEMRER 395



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 48/221 (21%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           SVL  LCR+    DK +            P   ++  LIG  C++ +I+EAL++   M  
Sbjct: 231 SVLKGLCRS-GMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRH 289

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK-------------------------- 165
            G     ++F  ++ +  R  +M+ A   +  M+                          
Sbjct: 290 RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSD 349

Query: 166 EIRVS---------PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
            +RV          PD+  YN LL   C +  L    G+L +M E  +  D  T+  L+ 
Sbjct: 350 ALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIH 409

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           G C  G++++A  L   M++        TY  ++  + R G
Sbjct: 410 GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQG 450



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 2/167 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + ++   CK  + D+   V+  M +       +T + ++    R    E A  L++ M  
Sbjct: 160 NIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVS 219

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + P +  YN +L   C  G       V K+M++  +  D R++  L+ G CR G +EE
Sbjct: 220 KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEE 279

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGG 271
           A  + + M   G      +++ ++G   R G    A+ ++  M C G
Sbjct: 280 ALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFG 326



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 63/136 (46%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V PD+  +N ++ A    G+  A   ++  M  + L     TY++++ G CR+G  ++A+
Sbjct: 187 VFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAW 246

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            + + M D G +    ++  ++G   R+G   +A+K       R IK D   F  L    
Sbjct: 247 EVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLF 306

Query: 289 IGLERFNEANFILKEM 304
               + + A   L+EM
Sbjct: 307 ARRGKMDHAMAYLREM 322



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 53/134 (39%)

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           N ++  YC          V+ +ME+  +  D  T++ +V    RAG  E A  L+  MV 
Sbjct: 160 NIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVS 219

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G      TY  V+  L R G + +A +         +  D   F  L      +    E
Sbjct: 220 KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEE 279

Query: 297 ANFILKEMNKRDLK 310
           A  I KEM  R +K
Sbjct: 280 ALKIYKEMRHRGIK 293


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 89/184 (48%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P   +  T++  LCK   + +A  VVD+M + G     +T+  ++        M+EA
Sbjct: 279 KIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEA 338

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + ++M     +P++ +YN L+  YC    +     + ++M  +KL  +  TY+ L+ G
Sbjct: 339 VKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHG 398

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR+++A  L R MV  GQ     TY  ++  L +  +  +A+  +    G ++  D
Sbjct: 399 LCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPD 458

Query: 278 TELF 281
            +++
Sbjct: 459 IQIY 462



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 77/167 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TLI   CK++++D+A+ + + M       + +T++ ++  L    R+++A  L
Sbjct: 352 PNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIAL 411

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PDL  Y  LL   C   +L     +LK +E   L  D + Y  ++ G CR
Sbjct: 412 FREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCR 471

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           AG +E+A  L   +   G      TY  +   L + G   +A K  M
Sbjct: 472 AGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFM 518



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 111/262 (42%), Gaps = 15/262 (5%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           ++ Q+  V     +SG  PD  T   Y  L++      +++    + +      C     
Sbjct: 299 MVAQAHDVVDMMFQSGVEPDVVT---YTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVF 355

Query: 72  TFNFITN-------TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALR 124
           ++N + N        + ++ +  ++CR      K  P    Y+TLI  LC + ++ +A+ 
Sbjct: 356 SYNTLINGYCKIERMDKAMYLFEEMCR-----QKLIPNTVTYNTLIHGLCHVGRLQDAIA 410

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +   M   G     +T+  +L  L +   +++A  L++ ++   + PD+  Y  ++   C
Sbjct: 411 LFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMC 470

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
             G L     +   +  + L  +  TY+ +  G C+ G ++EA  L   M ++  S    
Sbjct: 471 RAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGC 530

Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
           TY  +    LR    ++A++ +
Sbjct: 531 TYNTITQGFLRNNETSRAIQLL 552



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 3/214 (1%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P    Y TLI  LCK      A+R++  M +G      + +  ++  L + ++  +
Sbjct: 173 EGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQ 232

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+ L   M    +SP++   N L+ A C  G     + +L +M + K+  +A +   +V 
Sbjct: 233 AFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVD 292

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTY-AHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
             C+ G V +A  ++  M   G      TY A + G  LR     +AVK   +   +   
Sbjct: 293 ALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLR-SEMDEAVKVFDMMVHKGCA 351

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +   + +L +    +ER ++A ++ +EM ++ L
Sbjct: 352 PNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKL 385



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 5/196 (2%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           N+F  +     + SVL+ + +   +     P  +++ TLI  LC   +I EAL + D M 
Sbjct: 117 NSFCHLNRVNFAFSVLAKILKLGCQ-----PDTASFTTLIKGLCLEGQIGEALHLFDKMI 171

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             GF    + +  +++ L +      A  L+  M++    PD+  Y  L+ + C     T
Sbjct: 172 WEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQT 231

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               +  +M  + +  +  T ++LV   C  G  +    LL  MVD        +   V+
Sbjct: 232 QAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVV 291

Query: 251 GALLRLGYYAQAVKFV 266
            AL + G  AQA   V
Sbjct: 292 DALCKEGMVAQAHDVV 307



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 81/186 (43%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+AL   + M       S + F  IL+ +T+ KR      L   M    +  ++   N 
Sbjct: 55  LDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNV 114

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+ ++C    +     VL K+ +     D  ++  L+ G C  G++ EA  L  +M+ +G
Sbjct: 115 LINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEG 174

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
                  YA ++  L + G+ + A++ +      + + D  ++G+L   L    +  +A 
Sbjct: 175 FQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAF 234

Query: 299 FILKEM 304
            +  EM
Sbjct: 235 NLFSEM 240



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 1/165 (0%)

Query: 99  GFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           G P      + LI   C L +++ A  V+  + + G      +F  ++  L    ++ EA
Sbjct: 104 GIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEA 163

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L + M      PD+  Y  L+   C  G+ +A   +L+ ME+     D   Y  L+  
Sbjct: 164 LHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHS 223

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            C+  +  +AF L   M+  G S    T   ++ AL  LG +   
Sbjct: 224 LCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHV 268



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 2/224 (0%)

Query: 83  LSVLSDLCRTLARLDKGFPRKSAYD--TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            + L D   +  R+    P  S  D   ++  + K+K+    L +   M   G   +  T
Sbjct: 52  FNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYT 111

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
            + +++      R+  A+ ++  + ++   PD  ++  L+   C +G +     +  KM 
Sbjct: 112 LNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMI 171

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            E    D   Y  L+ G C+ G    A  LLR M           Y  ++ +L +     
Sbjct: 172 WEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQT 231

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           QA         + I  +     SL   L  L  +   N +L EM
Sbjct: 232 QAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEM 275


>gi|357129239|ref|XP_003566273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 550

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 13/212 (6%)

Query: 51  LETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTL 109
           L+ +R LL +R    CF T A   +  +    +L+VL  +       D   P   A   L
Sbjct: 86  LDEMRSLLQRRPDAACFTTVAAALSSASRPGAALAVLEAMAA-----DGVAPDTVACTVL 140

Query: 110 IG-RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +G   C+L++ D A  VV  M + G     +T+  ++  L R +R+ EA G++++M E  
Sbjct: 141 VGVYACRLQQFDAAYEVVRWMTDNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEG 200

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             P+   Y  ++ AYC  G +     +L  M          TY+ L+    + G  EE  
Sbjct: 201 CHPNAHTYTPIMHAYCTTGMIHEAKKLLDSMIAAGCAPSTATYNVLIEALSKVGAFEEVD 260

Query: 229 VLLRRMVDDG---QSVLYSTYAHVMGALLRLG 257
           VLL      G    ++ YSTY   M  L R G
Sbjct: 261 VLLEESTSKGWIPDTITYSTY---MDGLCRSG 289



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D G  P    Y TLI  LC+ +++ EAL V+D+M E G   +A T+ PI+        + 
Sbjct: 163 DNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGCHPNAHTYTPIMHAYCTTGMIH 222

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L++ M     +P    YN L+ A    G       +L++   +    D  TY   +
Sbjct: 223 EAKKLLDSMIAAGCAPSTATYNVLIEALSKVGAFEEVDVLLEESTSKGWIPDTITYSTYM 282

Query: 216 LGACRAGRVEEAFVLLRRMVDDG 238
            G CR+GRV+++F L+ RM+ +G
Sbjct: 283 DGLCRSGRVDKSFALVDRMLSNG 305



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 5/173 (2%)

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY-CFKGNLTATSGVL 196
           A  F  + + L+   R   A  ++E M    V+PD  A   L+  Y C      A   V+
Sbjct: 99  AACFTTVAAALSSASRPGAALAVLEAMAADGVAPDTVACTVLVGVYACRLQQFDAAYEVV 158

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           + M +  +  D  TY  L+ G CRA RV EA  +L  M+++G      TY  +M A    
Sbjct: 159 RWMTDNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGCHPNAHTYTPIMHAYCTT 218

Query: 257 GYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           G   +A K +  M+  G      T  +  L   L  +  F E + +L+E   +
Sbjct: 219 GMIHEAKKLLDSMIAAG--CAPSTATYNVLIEALSKVGAFEEVDVLLEESTSK 269



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT-RGKRMEEAWG 159
           P  + + T+   L    +   AL V++ MA  G     +    ++ V   R ++ + A+ 
Sbjct: 97  PDAACFTTVAAALSSASRPGAALAVLEAMAADGVAPDTVACTVLVGVYACRLQQFDAAYE 156

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M +  V+PD+  Y+ L+   C    +    GVL  M EE    +A TY  ++   C
Sbjct: 157 VVRWMTDNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGCHPNAHTYTPIMHAYC 216

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             G + EA  LL  M+  G +   +TY  ++ AL ++G + +
Sbjct: 217 TTGMIHEAKKLLDSMIAAGCAPSTATYNVLIEALSKVGAFEE 258



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 25/235 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P++A Y+ L+ A       E V  LL +         + +  +I +T    + +  LCR+
Sbjct: 238 PSTATYNVLIEALSKVGAFEEVDVLLEE---------STSKGWIPDTITYSTYMDGLCRS 288

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             R+DK F            P +   + L+  +C+      A  +++  AE G+  S I 
Sbjct: 289 -GRVDKSFALVDRMLSNGLHPNEVTLNILLNGVCRSLTAWAAKCLLECSAELGWDASVIN 347

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++  L   +R      L   M +  ++P+    N ++ + C  G L      L  M 
Sbjct: 348 YNTVMRRLCDERRWLAVVKLFTDMSKKGIAPNSWTLNIVVHSLCKLGKL---RNALCLMG 404

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            E+  A+A TY+ L+     +G+  E ++LL  M+++G +   +TY+ V+  L R
Sbjct: 405 SEEFVANAITYNTLIHHLSLSGKANEVYLLLHDMIEEGIAPNETTYSLVIDCLCR 459



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/219 (19%), Positives = 91/219 (41%), Gaps = 2/219 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
            P +  Y  +++A      +   + LL+      C  +  T+N +    + +    ++  
Sbjct: 202 HPNAHTYTPIMHAYCTTGMIHEAKKLLDSMIAAGCAPSTATYNVLIEALSKVGAFEEVDV 261

Query: 92  TLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L     KG+ P    Y T +  LC+  ++D++  +VD M   G   + +T + +L+ + 
Sbjct: 262 LLEESTSKGWIPDTITYSTYMDGLCRSGRVDKSFALVDRMLSNGLHPNEVTLNILLNGVC 321

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R      A  L+E   E+     +  YN ++   C +    A   +   M ++ +  ++ 
Sbjct: 322 RSLTAWAAKCLLECSAELGWDASVINYNTVMRRLCDERRWLAVVKLFTDMSKKGIAPNSW 381

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           T + +V   C+ G++  A  L+        ++ Y+T  H
Sbjct: 382 TLNIVVHSLCKLGKLRNALCLMGSEEFVANAITYNTLIH 420



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 10/220 (4%)

Query: 24  TKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-TEN 81
           T  G  PD  T S Y D L  +   ++    V  +L+            T N + N    
Sbjct: 267 TSKGWIPDTITYSTYMDGLCRSGRVDKSFALVDRMLSNGLHP----NEVTLNILLNGVCR 322

Query: 82  SLSVLSDLCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           SL+  +  C      + G+      Y+T++ RLC  ++    +++   M++ G   ++ T
Sbjct: 323 SLTAWAAKCLLECSAELGWDASVINYNTVMRRLCDERRWLAVVKLFTDMSKKGIAPNSWT 382

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
            + ++  L +  ++  A  LM    E  V+  +T YN L+      G       +L  M 
Sbjct: 383 LNIVVHSLCKLGKLRNALCLMG--SEEFVANAIT-YNTLIHHLSLSGKANEVYLLLHDMI 439

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
           EE +  +  TY  ++   CR  +   A     R  +DG S
Sbjct: 440 EEGIAPNETTYSLVIDCLCREEKFSVALSCFYRSCEDGFS 479


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 109/229 (47%), Gaps = 7/229 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           EN+ S LSD+       +KG FP    Y+TLI   C+   ++EA  ++D M+  G     
Sbjct: 114 ENTKSFLSDM------EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 167

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T++ I++ L +  +   A G+++ M +I +SPD   YN LL   C   N+     +  +
Sbjct: 168 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 227

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M  + +  D  ++ AL+    + G +++A    R M + G +     Y  ++G   R G 
Sbjct: 228 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 287

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++A+K       +   LD   + ++ + L   +  +EA+ +  EM +R
Sbjct: 288 MSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTER 336



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LIG  C+   + EAL+V D M E G  L  +T++ IL+ L + K + EA  L
Sbjct: 270 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADEL 329

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V PD   +  L+  Y   GN+     + + M +  L  D  TY+ L+ G C+
Sbjct: 330 FTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 389

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
              +E+   L   M+       + +Y  ++     +G  ++A + 
Sbjct: 390 GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 434



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 121/283 (42%), Gaps = 23/283 (8%)

Query: 15  QSVLVTRSF----TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN----KRARDCC 66
           Q +  T+SF     + G FPD  T   Y+ L+NA   +  LE    L++    K  + C 
Sbjct: 111 QKIENTKSFLSDMEEKGVFPDVVT---YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 167

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-----PRKSAYDTLIGRLCKLKKIDE 121
           F    T+N I N    L       R    LD+       P  + Y+ L+   C+   + +
Sbjct: 168 F----TYNAIIN---GLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 220

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A R+ D M   G     ++F  ++ +L++   +++A      MK   ++PD   Y  L+ 
Sbjct: 221 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 280

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            +C  G ++    V  +M E+    D  TY+ ++ G C+   + EA  L   M + G   
Sbjct: 281 GFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFP 340

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            + T+  ++    + G   +AV    +   R++K D   + +L
Sbjct: 341 DFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 383



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P   +Y  LI   C +  + EA R+ D M E GF  + IT + I+    R     +A  
Sbjct: 409 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 468

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +  M    + PD   YN L+  +  + N+     ++ KME   L  D  TY+ ++ G  
Sbjct: 469 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 528

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           R GR++EA +++ +M++ G +   STY  ++  
Sbjct: 529 RQGRMQEAELIMLKMIERGVNPDRSTYTSLING 561



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 90/205 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+T++  LCK K + EA  +   M E G      TF  +++  ++   M +A  L E+M
Sbjct: 309 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 368

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  + PD+  YN L+  +C    +   + +   M   ++  +  +Y  L+ G C  G V
Sbjct: 369 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCV 428

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EAF L   MV+ G      T   ++    R G   +A +F+     + I  D   + +L
Sbjct: 429 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 488

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            +  I  E  + A  ++ +M    L
Sbjct: 489 INGFIKEENMDRAFALVNKMENSGL 513



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 73/143 (51%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           +A ++L+G L K+  +D A  +   +   G  ++  T + +++ L + +++E     +  
Sbjct: 63  NACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSD 122

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+E  V PD+  YN L+ AYC +G L     ++  M  + L     TY+A++ G C+ G+
Sbjct: 123 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 182

Query: 224 VEEAFVLLRRMVDDGQSVLYSTY 246
              A  +L  M+  G S   +TY
Sbjct: 183 YLRAKGVLDEMLKIGMSPDTATY 205



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + +I  LCK +KI+     +  M E G     +T++ +++   R   +EEA+ LM+ M  
Sbjct: 101 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG 160

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + P +  YN ++   C  G      GVL +M +  +  D  TY+ L++  CR   + +
Sbjct: 161 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 220

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
           A  +   M   G      +++ ++G L + G   QA+K+      RD+K
Sbjct: 221 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYF-----RDMK 264



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 70/158 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +D L+    + +K+ E      ++   G  +S    + +L  L +   ++ AW + + +
Sbjct: 29  VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 88

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V  ++   N ++ A C    +  T   L  MEE+ +  D  TY+ L+   CR G +
Sbjct: 89  VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 148

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           EEAF L+  M   G      TY  ++  L + G Y +A
Sbjct: 149 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 186



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 7/151 (4%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    + TLI    K   +++A+ + ++M +       +T++ ++    +G  ME+   
Sbjct: 339 FPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNE 398

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M   R+ P+  +Y  L+  YC  G ++    +  +M E+   A   T + +V G C
Sbjct: 399 LWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC 458

Query: 220 RAGRVEEA-----FVLLRRMVDDGQSVLYST 245
           RAG   +A      +LL+ +V DG  + Y+T
Sbjct: 459 RAGNAVKADEFLSNMLLKGIVPDG--ITYNT 487



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 85/207 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   CK  ++++   + + M       + I++  +++       + EA+ L
Sbjct: 375 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 434

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E      +   N ++  YC  GN       L  M  + +  D  TY+ L+ G  +
Sbjct: 435 WDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK 494

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              ++ AF L+ +M + G      TY  ++    R G   +A   ++    R +  D   
Sbjct: 495 EENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRST 554

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL +  +      EA  +  EM +R
Sbjct: 555 YTSLINGHVTQNNLKEAFRVHDEMLQR 581


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 35/245 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +IG  C+   + +ALRV D M   G     +T++ +L+ L + +R+ +A GL
Sbjct: 268 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 327

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  V PDL  +  L+  YC +G L     +   M  ++L  D  TY+ L+ G CR
Sbjct: 328 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 387

Query: 221 A-----------------------------------GRVEEAFVLLRRMVDDGQSVLYST 245
                                               G+VE+AF  L  M++ G      T
Sbjct: 388 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT 447

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y  ++    R G  ++  KF+       +  D   + +L    I  ++ ++A  +L  M 
Sbjct: 448 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMME 507

Query: 306 KRDLK 310
           K  ++
Sbjct: 508 KEKVQ 512



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 125/321 (38%), Gaps = 59/321 (18%)

Query: 1   MSLLRKLPTKFLIPQSVLVTR---SFTKSGAFPDE-------------PTSAYYDDLVNA 44
           M+ LR++    L+P  V+ T     F ++G   D              P    Y+ L+N 
Sbjct: 255 MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 314

Query: 45  AGHERDLETVRYLLNK-RARD-----CCFNTA--------------NTFNFITN------ 78
              ER L     LLN+ R R      C F T                 F+ + N      
Sbjct: 315 LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 374

Query: 79  --TENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALR 124
             T N+L  +  +CR    LDK             FP    Y  LI   C+  ++++A  
Sbjct: 375 IVTYNTL--IDGMCRQ-GDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 431

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
            +D M   G   + +T++ I+    R   + +    ++ M   +VSPDL  YN L+  Y 
Sbjct: 432 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYI 491

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            +  +     +L  ME+EK+  D  TY+ L+ G    G V+EA  +  +M   G      
Sbjct: 492 KEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRY 551

Query: 245 TYAHVMGALLRLGYYAQAVKF 265
           TY  ++   +  G   +A + 
Sbjct: 552 TYMSMINGHVTAGNSKEAFQL 572



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 94/209 (44%), Gaps = 2/209 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L++    + DL+    L +       F    T++ + ++      + D    
Sbjct: 373 PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF 432

Query: 93  LARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  + +KG  P    Y+++I   C+   + +  + +  M         IT++ ++    +
Sbjct: 433 LDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIK 492

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +M +A+ L+ +M++ +V PD+  YN L+  +   GN+     + +KM  + +  D  T
Sbjct: 493 EDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYT 552

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           Y +++ G   AG  +EAF L   M+  G+
Sbjct: 553 YMSMINGHVTAGNSKEAFQLHDEMLQRGK 581



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 10/213 (4%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    ++ ++    +    + A+ +VD M   G     +T++ +L  L R    ++AW 
Sbjct: 127 FPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWE 186

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M +  V+PD+ ++  L+  +C  G +     + K+M    +  D  ++  L+    
Sbjct: 187 VFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFA 246

Query: 220 RAGRVEEAFVLLRRM-----VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           R G+++ A   LR M     V DG       Y  V+G   R G  + A++      G   
Sbjct: 247 RRGKMDHAMAYLREMRCFGLVPDG-----VIYTMVIGGFCRAGLMSDALRVRDEMVGCGC 301

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             D   + +L + L    R  +A  +L EM +R
Sbjct: 302 LPDVVTYNTLLNGLCKERRLLDAEGLLNEMRER 334



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 48/221 (21%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           SVL  LCR+    DK +            P   ++  LIG  C++ +I+EAL++   M  
Sbjct: 170 SVLKGLCRS-GMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRH 228

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK-------------------------- 165
            G     ++F  ++ +  R  +M+ A   +  M+                          
Sbjct: 229 RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSD 288

Query: 166 EIRVS---------PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
            +RV          PD+  YN LL   C +  L    G+L +M E  +  D  T+  L+ 
Sbjct: 289 ALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIH 348

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           G C  G++++A  L   M++        TY  ++  + R G
Sbjct: 349 GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQG 389



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 2/167 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + ++   CK  + D+   V+  M +       +T + ++    R    E A  L++ M  
Sbjct: 99  NIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVS 158

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + P +  YN +L   C  G       V K+M++  +  D R++  L+ G CR G +EE
Sbjct: 159 KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEE 218

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGG 271
           A  + + M   G      +++ ++G   R G    A+ ++  M C G
Sbjct: 219 ALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFG 265



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 66/141 (46%)

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M++  V PD+  +N ++ A    G+  A   ++  M  + L     TY++++ G CR+G 
Sbjct: 121 MEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGM 180

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
            ++A+ + + M D G +    ++  ++G   R+G   +A+K       R IK D   F  
Sbjct: 181 WDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSC 240

Query: 284 LGSKLIGLERFNEANFILKEM 304
           L        + + A   L+EM
Sbjct: 241 LIGLFARRGKMDHAMAYLREM 261



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 53/134 (39%)

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           N ++  YC          V+ +ME+  +  D  T++ +V    RAG  E A  L+  MV 
Sbjct: 99  NIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVS 158

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G      TY  V+  L R G + +A +         +  D   F  L      +    E
Sbjct: 159 KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEE 218

Query: 297 ANFILKEMNKRDLK 310
           A  I KEM  R +K
Sbjct: 219 ALKIYKEMRHRGIK 232


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R  K  P    Y +LI  LCKL +I  AL++VD M + G   + +T+  IL  L +   +
Sbjct: 368 RCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHV 427

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L+  +K+  + PD+  Y  L+   C  G L     V + +  +    D   Y  +
Sbjct: 428 DKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVM 487

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G C  G  ++A  LL +M D+G      TY  V+ +L  
Sbjct: 488 IQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFE 528



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 89/207 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  +CK K +++A  +   M          T++ ++S  +   ++  A  L
Sbjct: 199 PNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDL 258

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK+  ++P++  +N L+  +C +G +     VL  M ++ +  D  TY++L+ G C 
Sbjct: 259 FNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCS 318

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +V +A  +   M   G       Y  ++    ++    +A+        R I  +   
Sbjct: 319 INKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVT 378

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL   L  L R   A  ++ EM+ R
Sbjct: 379 YSSLIDGLCKLGRIFYALKLVDEMHDR 405



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 2/235 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN + N  + L + S      A+ L KG+ P    ++TLI  LC    I +AL   D +
Sbjct: 98  TFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKV 157

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF L  +++  +++ L +  R+  A  L++ +    V P+   YN ++   C    +
Sbjct: 158 VAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLV 217

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  +M  +++  D  TY+AL+ G     ++  A  L  +M  +  +    T+  +
Sbjct: 218 NDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNIL 277

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +    + G    A   + +    DIK D   + SL      + + N+A  I   M
Sbjct: 278 VDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSM 332



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 80/158 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y T++   CK+K +DEA+ + + M       + +T+  ++  L +  R+  A  L++ M 
Sbjct: 344 YTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMH 403

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +    P++  Y+ +L A C   ++     +L  ++++ +  D  TY  L+ G C++GR+E
Sbjct: 404 DRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLE 463

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           +A  +   ++  G ++    Y  ++      G++ +A+
Sbjct: 464 DAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKAL 501



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 2/227 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L++       L     L NK  ++       TFN + +       ++D    
Sbjct: 234 PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVV 293

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           LA +  D   P    Y++L+   C + K+++A  + D MA GG   +   +  +++   +
Sbjct: 294 LAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCK 353

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            K ++EA  L E M+  ++ P++  Y+ L+   C  G +     ++ +M +     +  T
Sbjct: 354 IKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVT 413

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           Y +++   C+   V++A  LL  + D G      TY  ++  L + G
Sbjct: 414 YSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSG 460



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 91/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+   CK  K+++A  V+ IM +       +T++ ++       ++ +A  +
Sbjct: 269 PNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDI 328

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    V  ++  Y  ++  +C    +     + ++M   K+  +  TY +L+ G C+
Sbjct: 329 FDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCK 388

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+  A  L+  M D GQ     TY+ ++ AL +  +  +A+  +     + I+ D   
Sbjct: 389 LGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYT 448

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L   L    R  +A  + +++
Sbjct: 449 YTILIKGLCQSGRLEDAQNVFEDL 472



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 66/138 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +++  LCK   +D+A+ ++  + + G      T+  ++  L +  R+E+A  +
Sbjct: 409 PNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNV 468

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E +     + D+ AY  ++  +C KG       +L KME+     +A+TY+ ++L    
Sbjct: 469 FEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFE 528

Query: 221 AGRVEEAFVLLRRMVDDG 238
               + A  LLR M+  G
Sbjct: 529 KDENDTAEKLLREMIVRG 546


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 187 LGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 246

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 247 FTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 306

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    YA ++  L + G   
Sbjct: 307 MKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSV 366

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++        + + +LKEM +
Sbjct: 367 DAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 412



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 53/117 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI   CK   +D A      M +    L  + +  ++S L +  R  +A  +
Sbjct: 312 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKM 371

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +  M  + + PD   Y  ++  +C KG++   S +LK+M+         TY+ L+ G
Sbjct: 372 LREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK   + +A  ++D M+  G      T+  ++    +   ++ A+ 
Sbjct: 276 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE 335

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M +  +  D  AY  L++  C +G       +L++M    L  D  TY  ++   C
Sbjct: 336 HRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFC 395

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + G V +   LL+ M  +G +    TY  +M  
Sbjct: 396 KKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428



 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 49/116 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L  L + K  +  WG  E + E      L  +N L+  +C  G++     V   +
Sbjct: 106 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 165

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  L     +Y+ L+ G  R G ++E F L   M+  G      TY+ ++  L +
Sbjct: 166 TKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCK 221


>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g16890, mitochondrial-like
           [Cucumis sativus]
          Length = 688

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLIG  C+   +D+A  +++++ E  F     TF+ ++  L +  + E A+G 
Sbjct: 498 PNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGC 557

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V P++  YN L+ ++C  G+++ ++ +L++M+   +  D  +++AL+ G   
Sbjct: 558 FTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTG 617

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             R ++A  L   M+  G      TY  ++ +L + G + +A
Sbjct: 618 KNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKA 659



 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALR--VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           P  S ++  +   C LKK+D  +   V D   + G      T+  ++  L +  +ME   
Sbjct: 393 PSSSTFNITLA--CVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGN 450

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
             M+ +    +  ++ +YN ++   C   ++   S + + +    +  +  TY+ L+ G 
Sbjct: 451 RYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGF 510

Query: 219 CRAGRVEEAFVLLRRMVD 236
           CR G +++A  LL  +++
Sbjct: 511 CRNGNMDKAQELLEMLLE 528



 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 70/165 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++  L K   +D A      M+         T++ ++  + R   ++EA  L
Sbjct: 227 PTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRL 286

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M+ M+ +   P++  Y  L+  +        T  VL+ M+E  +  +  T  +LV G  R
Sbjct: 287 MKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGVFR 346

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
               ++AF LL   V+  Q +      +++  L      ++AV F
Sbjct: 347 CIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMF 391


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 8/242 (3%)

Query: 67  FNTANTF--NFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALR 124
           FN AN      I    +   VL+ + R L+  D G    +  D L+    K  ++ +A  
Sbjct: 11  FNLANGLLIKMIRAYPSPPVVLASIHRALS--DSGHRSPAVLDVLVDTYKKSGRVQDAAE 68

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           VV +M + G   S    + +L  L R   M   W + E M    +SPD+  Y+ L+ AYC
Sbjct: 69  VVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYC 128

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
                     VL +M E   G +  TY+ L+ G CR+G VEEAF   + M D G      
Sbjct: 129 KVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGF 188

Query: 245 TYAHVMGALL--RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
           TY  ++  L   R    A+A+   M C   ++K +  ++ +L    +     +EA  ++K
Sbjct: 189 TYGALINGLCKSRRSNEAKALLDEMSCA--ELKPNVVVYANLIDGFMREGNADEAFKMIK 246

Query: 303 EM 304
           EM
Sbjct: 247 EM 248



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK+++ D A +V+  M E G GL+ +T++ +++ L R   +EEA+G 
Sbjct: 115 PDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGF 174

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M++  + PD   Y  L+   C          +L +M   +L  +   Y  L+ G  R
Sbjct: 175 KKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMR 234

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G  +EAF +++ MV  G      TY +++  L ++G   +A
Sbjct: 235 EGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA 276



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 2/209 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    YD+LV        ++    LL +  RD       T+N I           D  R
Sbjct: 254 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFR 313

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+ ++     P    Y  +I  LC+  + ++A  +++ M   G   +A  + P++S   
Sbjct: 314 LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 373

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R   +  A  + + M ++ V PDL  YN L+      G +  ++    +M+E  L  +  
Sbjct: 374 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 433

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G  + G +E A  L++RM+D G
Sbjct: 434 TYSGLIHGYLKNGDLESAEQLVQRMLDTG 462



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 25/249 (10%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVR-YLLNKRARDCCFNTANTFNFITNTENSLS 84
           +G  PD  T   Y  L+ A    R+ +T +  L+  R R C  NT  T+N +        
Sbjct: 111 AGISPDVYT---YSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTV-TYNVL-------- 158

Query: 85  VLSDLCRTLARLDK-GF----------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
            ++ LCR+ A  +  GF          P    Y  LI  LCK ++ +EA  ++D M+   
Sbjct: 159 -IAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAE 217

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
              + + +  ++    R    +EA+ +++ M    V P+   Y+ L+   C  G +   S
Sbjct: 218 LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRAS 277

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            +LK+M  +    D  TY+ ++ G  R    ++AF LL  M + G S    TY+ ++  L
Sbjct: 278 LLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGL 337

Query: 254 LRLGYYAQA 262
            + G   +A
Sbjct: 338 CQSGEPEKA 346



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  YD L+  LCK+ ++D A  ++  M         IT++ I+    R    ++A+ L
Sbjct: 255 PNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRL 314

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   +SP++  Y+ ++   C  G     S +L++M  + L  +A  Y  L+ G CR
Sbjct: 315 LSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR 374

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G V  A  +  +M           Y  ++  L ++G   ++ K+
Sbjct: 375 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKY 419



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 64/133 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  L     ++ A RV+  + + G       +  ++S L +    E+A+G+++ M 
Sbjct: 505 YGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMS 564

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  V P++  YN L+   C  G+++    V   +  + L  +  TY +L+ G+C+ G + 
Sbjct: 565 KKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDIS 624

Query: 226 EAFVLLRRMVDDG 238
            AF L   M+  G
Sbjct: 625 NAFYLYNEMLATG 637



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 87/210 (41%), Gaps = 1/210 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P    Y  L+    K   I++       M + G  L    +  ++  L+    M
Sbjct: 459 LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNM 518

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E A+ ++  +++    PD+  Y+ L++  C   +     G+L +M ++ +  +   Y+AL
Sbjct: 519 EAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 578

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C++G +  A  +   ++  G      TY  ++    ++G  + A           I
Sbjct: 579 IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 638

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             D  ++  L +         +A F+++EM
Sbjct: 639 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 668



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 102/243 (41%), Gaps = 31/243 (12%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L++ +    D+    YL N+         A  ++ +T      S   DL + 
Sbjct: 605 PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTT---GCSSAGDLEQA 661

Query: 93  LARLDKGFPRK----SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           +  +++ F R     S+++ L+   CK  K+ E L+++ ++   G   +A+T   I+S L
Sbjct: 662 MFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGL 721

Query: 149 TRGKRMEEAWGL--------------------MEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           +   ++ E   +                    M+++ + ++  D+   + ++  +C +GN
Sbjct: 722 SEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVV--DDMIRDHCKEGN 779

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L     +   +  +       +Y A+V   CR G++ EA  LL+ M  D +  L  T   
Sbjct: 780 LDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEM--DKRGNLQPTLVA 837

Query: 249 VMG 251
           ++G
Sbjct: 838 LLG 840



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 64/158 (40%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  Y  LI    K   ++ A ++V  M + G   + + +  +L    +   +E+   
Sbjct: 429 LPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSS 488

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M +  V  D   Y  L+      GN+ A   VL ++E+     D   Y +L+ G C
Sbjct: 489 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLC 548

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +    E+AF +L  M   G       Y  ++  L + G
Sbjct: 549 KTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 586


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 95/204 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  L+   C+ +K +EA ++++ M + G     +T   +++   R  RM  A  +
Sbjct: 263 PTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRV 322

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M+     P++  YN ++  +C  G +     +L +M E  +  D  TY+ L+ G C 
Sbjct: 323 FESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCI 382

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +  AF LLR M  +G +    TY  ++ AL + G   +A         R I+ ++  
Sbjct: 383 DGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVT 442

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F ++ + L    +F+ A   L+ M
Sbjct: 443 FNTVINGLCKAGKFDVACTFLENM 466



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 39/317 (12%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---NTENSLSVL 86
           P  PT A Y+ L+ A     DL   +  L+   R      A TFN +         L V 
Sbjct: 124 PPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVA 183

Query: 87  SDL-CRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRV------------------- 125
            DL C+   R   GF + + +Y  LI   C+  +IDEAL +                   
Sbjct: 184 HDLFCKMPFR---GFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYTHAALVKGL 240

Query: 126 ------------VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
                       +  M E G+  +   +  ++ +  R ++ EEA  ++  M +  + P +
Sbjct: 241 CDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCV 300

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
                ++ AYC +G ++    V + M  +    +  TY+A+V G C AG+V +A  LL +
Sbjct: 301 VTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQ 360

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
           M + G      TY  ++      G+   A + + +  G  +  D   +  L   L    +
Sbjct: 361 MRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGK 420

Query: 294 FNEANFILKEMNKRDLK 310
            +EA  +   +  R ++
Sbjct: 421 VDEACSLFDGLEYRGIR 437



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 116/273 (42%), Gaps = 15/273 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT+  Y  LV+    E+  E    +LN+           T   + N       +S   R 
Sbjct: 263 PTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRV 322

Query: 93  LA--RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
               R     P    Y+ ++   C   K+ +A+ ++D M E G     +T+    ++L R
Sbjct: 323 FESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTY----NLLIR 378

Query: 151 GKRME----EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           G+ ++     A+ L+ +M+   ++ D   YN L+ A C  G +     +   +E   +  
Sbjct: 379 GQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRP 438

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           ++ T++ ++ G C+AG+ + A   L  M+  G +    TY+  +  L +     + + F+
Sbjct: 439 NSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFI 498

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
                +D+K  T  +  + ++L     FNE N+
Sbjct: 499 DEMLQKDVKPSTVNYTIVINRL-----FNERNY 526



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 2/165 (1%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN + N           C  L  +   G+ P    Y   I  LCK K   E L  +D M
Sbjct: 442 TFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEM 501

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            +     S + +  +++ L   +    A  +   M     SPD+  Y   + AYC +G L
Sbjct: 502 LQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRL 561

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
                V+ +M++ +   DA  Y+ L+ G    G+ + A  +L+ M
Sbjct: 562 DEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHM 606



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/206 (18%), Positives = 73/206 (35%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C    I  A R++ +M   G      T++ ++  L +  +++EA  L
Sbjct: 368 PDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSL 427

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + ++   + P+   +N ++   C  G        L+ M       D  TY   +   C+
Sbjct: 428 FDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCK 487

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
               +E    +  M+          Y  V+  L     Y  A +       +    D   
Sbjct: 488 TKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVT 547

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + +         R +EA  ++ EM K
Sbjct: 548 YTTSVRAYCNEGRLDEAENVVTEMKK 573



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/109 (19%), Positives = 47/109 (43%)

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
           +++DE   +V +M E    L+   ++ +++   + +   +AW L+  M      P+L  Y
Sbjct: 680 RRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFY 739

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            YLL+    +G       + +    ++   D   +  ++ G  R G  +
Sbjct: 740 QYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGHAD 788


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 91/184 (49%), Gaps = 1/184 (0%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    + T++  LCK  KI EA  VVD+M   G   + +T++ ++        M+EA
Sbjct: 274 KIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEA 333

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + + M     +P++ +YN L+  YC    +   + + ++M +++L  +  TY+ L + 
Sbjct: 334 VKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTL-MH 392

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR+++A  L   MV  GQ    +TY  ++  L +  +  +A+  +    G ++  D
Sbjct: 393 XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPD 452

Query: 278 TELF 281
            +++
Sbjct: 453 IQIY 456



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 1/207 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TLI   CK++++D+A  + + M +     + +T++ ++     G R+++A  L
Sbjct: 347 PNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVG-RLQDAIAL 405

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PDL  Y  LL   C K +L     +LK +E   +  D + Y  ++ G CR
Sbjct: 406 FHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCR 465

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG +E A  +   +   G      TY  ++  L R G   +A K  M   G     D   
Sbjct: 466 AGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCT 525

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + ++   L+  +    A  +L+EM  R
Sbjct: 526 YNTITQGLLQNKEALRAIQLLQEMLAR 552



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 5/217 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +GF P    Y TLI  LCK+   + A+R++  M +G      + +  I+  L + +++
Sbjct: 166 IGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 225

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+ L   M    +SPD+  Y  L+ + C        + +L +M   K+  D   +  +
Sbjct: 226 TEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTV 285

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGR 272
           V   C+ G++ EA  ++  M+  G      TY  +M          +AVK    MV  G 
Sbjct: 286 VDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGY 345

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              + +  + +L +    ++R ++A ++ +EM +++L
Sbjct: 346 APNVIS--YNTLINGYCKIQRMDKATYLFEEMCQKEL 380



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 1/156 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TL+   C + ++ +A+ +   M   G      T+  +L  L +   ++EA  
Sbjct: 381 IPNTVTYNTLM-HXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMA 439

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ ++   + PD+  Y  ++   C  G L A   +   +  + L  + RTY  ++ G C
Sbjct: 440 LLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLC 499

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           R G ++EA  L   M  +G S    TY  +   LL+
Sbjct: 500 RRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQ 535



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 103/247 (41%), Gaps = 2/247 (0%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           SF +       P++  ++ L+ +    +   TV  L N+           T N + N+  
Sbjct: 56  SFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFC 115

Query: 82  SLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
            L+ L      LA++ K    P  + + TLI  LC   KI +AL + D M   GF  + +
Sbjct: 116 HLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVV 175

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +++ L +      A  L+  M++    PD+  Y  ++ + C    +T    +  KM
Sbjct: 176 TYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKM 235

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             + +  D  TY +L+   C     +    LL +M++         ++ V+ AL + G  
Sbjct: 236 VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKI 295

Query: 260 AQAVKFV 266
            +A   V
Sbjct: 296 TEAHDVV 302



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 86/210 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI   C L ++  A  V+  + + G      TF  ++  L    ++ +A  L
Sbjct: 102 PDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHL 161

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P++  Y  L+   C  GN  A   +L+ ME+     D   Y +++   C+
Sbjct: 162 FDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 221

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +V EAF L  +MV  G S    TY  ++ +L  L  +      +       I  D  +
Sbjct: 222 DRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVI 281

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F ++   L    +  EA+ ++  M  R ++
Sbjct: 282 FSTVVDALCKEGKITEAHDVVDMMIIRGVE 311



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 81/190 (42%)

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
               +D+AL   + M       S + F+ +L+ + + K+    + L   M    + PD+ 
Sbjct: 46  NFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVY 105

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             N L+ ++C    L     VL K+ +     D  T+  L+ G C  G++ +A  L  +M
Sbjct: 106 TLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKM 165

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           + +G      TY  ++  L ++G    A++ +      + + D  ++ S+   L    + 
Sbjct: 166 IGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 225

Query: 295 NEANFILKEM 304
            EA  +  +M
Sbjct: 226 TEAFNLFSKM 235



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 2/225 (0%)

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYD--TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + + L D   +  R+    P  S  D   L+  + K K+      + + M   G      
Sbjct: 46  NFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVY 105

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T + +++      R+  A+ ++  + ++   PD   +  L+   C +G +     +  KM
Sbjct: 106 TLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKM 165

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             E    +  TY  L+ G C+ G    A  LLR M           Y  ++ +L +    
Sbjct: 166 IGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 225

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +A        G+ I  D   + SL   L  L  +     +L +M
Sbjct: 226 TEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQM 270


>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLIG  C+   +D+A  +++++ E  F     TF+ ++  L +  + E A+G 
Sbjct: 507 PNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGC 566

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V P++  YN L+ ++C  G+++ ++ +L++M+   +  D  +++AL+ G   
Sbjct: 567 FTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTG 626

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             R ++A  L   M+  G      TY  ++ +L + G + +A
Sbjct: 627 KNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKA 668



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+ LI  +C+L  +DEALR++  M   G+  +  T+  ++      KR  EA+ +
Sbjct: 262 PDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKV 321

Query: 161 MEVMKEIRVSPD 172
           ++ MKE  V P+
Sbjct: 322 LQTMKERNVVPN 333



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALR--VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           P  S ++  +   C LKK+D  +   V D   + G      T+  ++  L +  +ME   
Sbjct: 402 PSSSTFNITLA--CVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGN 459

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
             M+ +    +  ++ +YN ++   C   ++   S + + +    +  +  TY+ L+ G 
Sbjct: 460 RYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGF 519

Query: 219 CRAGRVEEAFVLLRRMVD 236
           CR G +++A  LL  +++
Sbjct: 520 CRNGNMDKAQELLEMLLE 537



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 132 GGFGLSAIT--FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
           G  GL+  T  ++ ++  L +   ++ A+   + M      PD   YN L+   C  G +
Sbjct: 221 GLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVV 280

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
                ++K+ME      +  TY  L+ G   A R  EAF +L+ M
Sbjct: 281 DEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTM 325


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 104/248 (41%), Gaps = 23/248 (9%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R L     IPQ+  V ++ T  G  PD  T +   D +  AG  R    VR   +  
Sbjct: 144 ALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAG--RIGAAVRIFKSME 201

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRT---------LARLDKGF--PRKSAYDTLI 110
           AR              N     +++  LC+          LA++ K F  P    Y+ LI
Sbjct: 202 AR----------GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 251

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
             LCK   +  A    D M E G      T++ ++S   +    + A G+ + M   R S
Sbjct: 252 DGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCS 311

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P++  Y  L++  C +  LT  S   + M+E     D+  Y +LV G C++G++E   +L
Sbjct: 312 PNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCML 371

Query: 231 LRRMVDDG 238
              M   G
Sbjct: 372 FDEMERSG 379



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 120/308 (38%), Gaps = 7/308 (2%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHE-RDLETVRYLLNK 60
           +LL  L     + +++ + R    +G  PD  T   Y  L++  G + R  E  +     
Sbjct: 74  ALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT---YTSLIDGLGKKKRSFEAYKLFKEM 130

Query: 61  RARDCCFNTANTFNFITN--TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKK 118
            +R    +T      I        +   S + +T+       P      T+I  LCK  +
Sbjct: 131 ASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTS-QGCVPDVVTLSTMIDGLCKAGR 189

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           I  A+R+   M   G   + + +  ++  L + ++M+ A  ++  MK+   +PD   YN 
Sbjct: 190 IGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 249

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+   C  G++ A      +M E     D  TY+ L+ G C+AG  + A  +   M    
Sbjct: 250 LIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSR 309

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            S    TY  ++  L +     +A  +      R    D+ ++ SL   L    +     
Sbjct: 310 CSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGC 369

Query: 299 FILKEMNK 306
            +  EM +
Sbjct: 370 MLFDEMER 377



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 82/204 (40%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  LI  L K   + +A  +       G  +   T+  I+  L + K+++EA  LME + 
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               +P +  YN LL   C  G L     +L+K+ +     D  TY +L+ G  +  R  
Sbjct: 62  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSF 121

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA+ L + M   G ++    Y  ++  LL+ G   QA         +    D     ++ 
Sbjct: 122 EAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMI 181

Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
             L    R   A  I K M  R L
Sbjct: 182 DGLCKAGRIGAAVRIFKSMEARGL 205



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ L+  LCK+ +++EA+ ++  + + G     +T+  ++  L + KR  EA+ L
Sbjct: 67  PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKL 126

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    ++ D   Y  L+      G +   S V K M  +    D  T   ++ G C+
Sbjct: 127 FKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK 186

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           AGR+  A  + + M   G     V+YS   H
Sbjct: 187 AGRIGAAVRIFKSMEARGLAPNEVVYSALIH 217



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 91/201 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y T++  L K KKI EA+ +++ +   G   +  T++ +L+ L +  R+EEA  L+  + 
Sbjct: 37  YTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIV 96

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +   +PD+  Y  L+     K        + K+M    L  D   Y AL+ G  +AG++ 
Sbjct: 97  DNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIP 156

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  + + M   G      T + ++  L + G    AV+       R +  +  ++ +L 
Sbjct: 157 QASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 216

Query: 286 SKLIGLERFNEANFILKEMNK 306
             L    + + A  +L +M K
Sbjct: 217 HGLCKARKMDCALEMLAQMKK 237



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 49/232 (21%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSV 85
           P +  Y+ L++      D+   R   ++     C     T+N +        NT+ +  V
Sbjct: 242 PDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGV 301

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
             D+  +     +  P    Y TLI  LCK +++ +A              S    H   
Sbjct: 302 FDDMSSS-----RCSPNVVTYGTLISGLCKRRQLTKA--------------SLYYQH--- 339

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
                             MKE    PD   Y+ L+   C  G L     +  +ME   + 
Sbjct: 340 ------------------MKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV- 380

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           A+++T   L+   C+A RV+EA  L   +  +G    Y+ Y  ++ AL++ G
Sbjct: 381 ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYA-YNSIISALIKSG 431


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 1/211 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P   +Y TLI   CK+ KID+A+ + + M    +     T++ ++  L    R+++
Sbjct: 339 KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQD 398

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L   M      PDL  Y+ LL + C   +L     +LK +E   L  D + Y+ ++ 
Sbjct: 399 AIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIID 458

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G CRAG +E A  L   +   G      TY  ++  L + G   +A K  M   G D   
Sbjct: 459 GMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSP 518

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           D   + ++    +       A  +L+EM  R
Sbjct: 519 DGCTYNTIARGFLQNNETLRAIQLLEEMLAR 549



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 89/184 (48%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    + T++  LCK  K+ EA  +VD+M + G     +T+  ++        M+EA
Sbjct: 270 KILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEA 329

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + ++M     +PD+ +Y  L+  YC    +     + ++M  ++   D +TY+ L+ G
Sbjct: 330 VKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYG 389

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR+++A  L   MV  GQ     TY+ ++ +L +  +  +A+  +      ++  D
Sbjct: 390 LCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPD 449

Query: 278 TELF 281
            +++
Sbjct: 450 IQVY 453



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 1/214 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+GF P    Y TLI  LCK+     A+R++  M +G      + +  I+  L + +++
Sbjct: 162 IDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQV 221

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+ L   M    +SPD+  Y  L+ A C        + +L +M   K+  D   +  +
Sbjct: 222 TEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTV 281

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           V   C+ G+V EA  ++  M+  G      TY  +M          +AVK   +   +  
Sbjct: 282 VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF 341

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
             D   + +L +    + + ++A ++ +EM +++
Sbjct: 342 APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKE 375



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 89/196 (45%), Gaps = 5/196 (2%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           N +  I   + ++ +  ++CR      +  P    Y+TL+  LC + ++ +A+ +   M 
Sbjct: 353 NGYCKIHKIDKAMYLFEEMCRK-----EWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMV 407

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G     +T+  +L  L + + +EEA  L++ ++   ++PD+  YN ++   C  G L 
Sbjct: 408 ARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELE 467

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
           A   +   +  + L     TY+ ++ G C+ G + EA  L   M  +  S    TY  + 
Sbjct: 468 AARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIA 527

Query: 251 GALLRLGYYAQAVKFV 266
              L+     +A++ +
Sbjct: 528 RGFLQNNETLRAIQLL 543



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 89/210 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI   C L ++  A  V+  + + G      TF  ++  L    ++ EA  L
Sbjct: 98  PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHL 157

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +    P++  Y  L+   C  GN +A   +L+ ME+     D   Y +++   C+
Sbjct: 158 FDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCK 217

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +V EAF L  +MV  G S    TY  ++ AL  L  +      +       I  D  +
Sbjct: 218 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 277

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F ++   L    +  EA+ I+  M +R ++
Sbjct: 278 FSTVVDALCKEGKVTEAHEIVDMMIQRGVE 307



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 84/201 (41%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S+ +    +      +D+AL   + +       S + F  +L+ + + K       L   
Sbjct: 31  SSQNNFHSKSLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQ 90

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    V P++   N L+ ++C    +     VL K+ +     D  T+  L+ G C  G+
Sbjct: 91  MDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGK 150

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           + EA  L  +M+D+G      TY  ++  L ++G  + A++ +      + + D  ++ S
Sbjct: 151 IGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTS 210

Query: 284 LGSKLIGLERFNEANFILKEM 304
           +   L    +  EA  +  +M
Sbjct: 211 IIDSLCKDRQVTEAFNLFSQM 231



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 3/240 (1%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYD--TLIGRLCKLKKIDEALR 124
           F +++  NF + + +  + L D   +  RL    P  S  D   L+  + K+K     L 
Sbjct: 28  FFSSSQNNFHSKSLH-FNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLS 86

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +   M   G   +  T + +++      R+  A+ ++  + ++   PD T +  L+   C
Sbjct: 87  LSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLC 146

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            +G +     +  KM +E    +  TY  L+ G C+ G    A  LLR M          
Sbjct: 147 VEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVV 206

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            Y  ++ +L +     +A        G+ I  D   + SL   L  L  +     +L +M
Sbjct: 207 IYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQM 266


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 12/206 (5%)

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLA-----------RLDKGFPRKSAYDTL 109
           +A+D  F++  +   I N ++  ++++ LC+              R  K  P    Y++L
Sbjct: 333 KAKDI-FDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSL 391

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           I  L KL KI   L++VD M + G   + IT++ IL  L +   +++A  L+  +K+  +
Sbjct: 392 IDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGI 451

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            PD+  Y  L+   C  G L     V + +  +    D  TY  ++ G C  G  + A  
Sbjct: 452 RPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALA 511

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLR 255
           LL +M D+G      TY  V+ +L  
Sbjct: 512 LLSKMEDNGCIPNAKTYEIVILSLFE 537



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 110/238 (46%), Gaps = 2/238 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN + N  + L + S       + L KGF P    ++TLI  LC    I +AL   D +
Sbjct: 107 TFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKV 166

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF L  +++  +++ L +  R+  A  L++ +    V P+   YN ++   C    +
Sbjct: 167 VAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLV 226

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  +M  +++  D  T ++L+ G C  G+++EA  LL +M+ +  +    T++ +
Sbjct: 227 NDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSIL 286

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           + A  + G   +A   + V   +DI LD   + SL      ++  N+A  I   M  R
Sbjct: 287 VDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASR 344



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 79/160 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y++L+   C +K+I++A  + D MA  G   +  ++  +++ L + K ++EA  L E M
Sbjct: 317 TYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEM 376

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +  ++ P++  YN L+      G ++    ++ +M +     +  TY++++   C+   V
Sbjct: 377 RCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHV 436

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           ++A  LL  + D G      TY  ++  L + G    A K
Sbjct: 437 DKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQK 476



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 41/243 (16%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           + +Y TLI  LCK+ +I  AL+++  +       +A+ ++ I+  + + K + +A+ L  
Sbjct: 175 QVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYS 234

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA---------------- 206
            M   R+SPD    N L+  +C  G L    G+L KM  E +                  
Sbjct: 235 QMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEG 294

Query: 207 -------------------DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
                              D  TY++L+ G C    + +A  +   M   G      +Y 
Sbjct: 295 KVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYT 354

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK---EM 304
            ++  L ++    +AV        R I  +   + SL   + GL +  + + +LK   EM
Sbjct: 355 TMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSL---IDGLGKLGKISCVLKLVDEM 411

Query: 305 NKR 307
           + R
Sbjct: 412 HDR 414



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/177 (19%), Positives = 78/177 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           PR   +  L+   CK  K+ EA  ++ +  +    L  +T++ ++      K + +A  +
Sbjct: 278 PRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDI 337

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    V  ++ +Y  ++   C    +     + ++M   K+  +  TY++L+ G  +
Sbjct: 338 FDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGK 397

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            G++     L+  M D GQ     TY  ++ AL +  +  +A+  +     + I+ D
Sbjct: 398 LGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPD 454


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 1/214 (0%)

Query: 95  RLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           R+   F  K+  Y  L+     + +  EA +V D M   G  L  + ++ +L  L +G  
Sbjct: 208 RVKHKFEAKAKTYSILVRGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGN 267

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           ++EA+ +   +    V PD  +Y   + AYC   N+ +   VL +M+   L  +  TY+ 
Sbjct: 268 VDEAYKMFREIGSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNC 327

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++   C+ G+VE+A+ LL  M++ G S    +Y  ++          +A K + +    +
Sbjct: 328 IIKKLCKNGKVEDAYQLLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDN 387

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
              D   +  L   L+ + RF+ A  I + M +R
Sbjct: 388 CLPDRHSYNMLLKLLVRVGRFDRATEIWESMGER 421



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y   I   C+   I     V+D M       +  T++ I+  L +  ++E+A+ L
Sbjct: 285 PDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQL 344

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  VSPD  +YN +L  +C    +   + ++  M ++    D  +Y+ L+    R
Sbjct: 345 LHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVR 404

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            GR + A  +   M + G     STY+ ++  L +
Sbjct: 405 VGRFDRATEIWESMGERGFYPSVSTYSVMIHGLCK 439


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 9/191 (4%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKR 153
           L +G P   +Y+ L+  LC   +  EAL ++ IMA+ G       +++  +++   +   
Sbjct: 44  LRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFK--- 100

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
                G ++ M + R+SP++  YN ++ A C    +     VL  M +  +  D  TY++
Sbjct: 101 ----EGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNS 156

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           +V G C +G+ +EA V L++M  DG      TY  +M  L + G   +A K       R 
Sbjct: 157 IVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRG 216

Query: 274 IKLDTELFGSL 284
           +K D   +G+L
Sbjct: 217 LKPDITTYGTL 227



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 6/193 (3%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D   P    Y++L+  LCK  +  EA ++ D M + G      T+  +L        +
Sbjct: 178 RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGAL 237

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E  GL+++M    + P+   ++ L+ AY  +  +     V  KM ++ L  +A TY  +
Sbjct: 238 VEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTV 297

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           +   C++GRVE+A +   +M+D+G    S++Y++  H   +L     + +A +  +    
Sbjct: 298 IDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIH---SLCIFDKWEKAEELFLEMLD 354

Query: 272 RDIKLDTELFGSL 284
           R I L T  F S+
Sbjct: 355 RGICLSTIFFNSI 367



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 91/209 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++++   C   +  EA+  +  M   G     +T++ ++  L +  R  EA  +
Sbjct: 149 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKI 208

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + PD+T Y  LL  Y  KG L    G+L  M    +  +   +  LV    +
Sbjct: 209 FDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAK 268

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +VEEA ++  +M   G +    TY  V+  L + G    A+ +        ++ D+ +
Sbjct: 269 QEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIV 328

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + SL   L   +++ +A  +  EM  R +
Sbjct: 329 YNSLIHSLCIFDKWEKAEELFLEMLDRGI 357



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 69/155 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+    K +K++EA+ V   M + G   +A+T+  ++ VL +  R+E+A   
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  + PD   YN L+ + C          +  +M +  +      +++++   C+
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCK 373

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            GRV E+  L   MV  G      T    +G+  R
Sbjct: 374 EGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARR 408



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 7/232 (3%)

Query: 40  DLVNAAGHERDLETVRYLLNKRARDCCF--NTANTFNFITNT---ENSLSVLSDLCRTLA 94
           DL+   G + D+ T+   L    RD     N    F  ++NT   E    V ++   T A
Sbjct: 385 DLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNT-A 443

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
               G P    Y+ ++  LCK K  D+ALR+   +      L A TF+ ++  L +  R 
Sbjct: 444 SNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRN 503

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  L        + P+   Y  +      +G L     +   ME+     D+   + +
Sbjct: 504 DEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFI 563

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           V    + G +  A   L  M+D+    L ++ A +   LL  G Y +   F+
Sbjct: 564 VRELLQRGEITRAGTYL-SMIDEKHFSLEASTASLFIDLLSGGKYQEYHIFL 614


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 1/215 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KGF       + LI  LCK   + EA+R++  M E GF L  IT++ ++S   +  ++
Sbjct: 550 LEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKV 609

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           EE + L   M +  + PD   YN L+   C  G L     +  + +   L  +  TY  +
Sbjct: 610 EEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVM 669

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+A ++EE   L   ++     +    Y  ++ A  R G   +A K       + I
Sbjct: 670 IDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGI 729

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              T  + SL   +  + R  +A  ++ EM K  L
Sbjct: 730 PPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGL 764



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 8/255 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYY-DDLVNAAGHERDLETVRYLLNKRARDC-CFNTA-N 71
            ++ V R     G FP   T  +    LV A   E+       +    + D   F+TA N
Sbjct: 262 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAIN 321

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
            F      E+++ +  D+ +         P    Y+ LI  LCK   +DEA R  + M +
Sbjct: 322 AFCKGGKVEDAIQLFFDMEKLGVS-----PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVK 376

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G   + IT+  +++ L + ++  EA  +++   E   +P+   YN L+  YC  GNL  
Sbjct: 377 DGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGD 436

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +   M  + +  ++ T ++++ G C+ G++E+A  +L  M+  G S+    +  ++ 
Sbjct: 437 ALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIH 496

Query: 252 ALLRLGYYAQAVKFV 266
            L     +  A++F+
Sbjct: 497 WLCMNSRFESALRFL 511



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 129/351 (36%), Gaps = 72/351 (20%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y++L++      +L+       K  +D    T  T++ + N    L   ++    
Sbjct: 346 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSV 405

Query: 93  LAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEG----------------- 132
           L   L+KGF P +  Y+TLI   CK+  + +ALR+  D++++G                 
Sbjct: 406 LKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCK 465

Query: 133 -----------------GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD--- 172
                            GF ++   F  I+  L    R E A   +  M    + P+   
Sbjct: 466 IGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGL 525

Query: 173 --------------------------------LTAYNYLLTAYCFKGNLTATSGVLKKME 200
                                           L   N L+   C  GN+     +LKKM 
Sbjct: 526 LTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKML 585

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E     D  TY+ L+ G C+ G+VEE F L   MV  G      TY  ++  + R+G   
Sbjct: 586 ERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLD 645

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           +AV     C  RD+  +   +G +       ++  E   +  E+  ++L++
Sbjct: 646 EAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLEL 696



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TLI   C+     EA ++ D M   G   +  T+  ++  +    RME+A  L++ M
Sbjct: 700 VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM 759

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++  + P++  Y  L+  YC  G +     VL++M    +  +  TY  ++ G  ++G +
Sbjct: 760 RKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 819

Query: 225 EEAFVLLRRMVDDG 238
           + A  LL  MV  G
Sbjct: 820 KTAAKLLHEMVGKG 833



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 5/267 (1%)

Query: 45  AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRK 103
            G    +   R+L NK      F T  T  F+ ++    + L         + +G  P  
Sbjct: 258 VGFRNAIGVFRFLANKGV----FPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDV 313

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
             + T I   CK  K+++A+++   M + G   + +T++ ++  L +   ++EA+   E 
Sbjct: 314 YLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEK 373

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M +  V+  L  Y+ L+            + VLK+  E+    +   Y+ L+ G C+ G 
Sbjct: 374 MVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGN 433

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           + +A  +   MV  G +    T   ++    ++G   QA   +     R   ++   F +
Sbjct: 434 LGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTT 493

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           +   L    RF  A   L+EM  R+++
Sbjct: 494 IIHWLCMNSRFESALRFLREMLLRNMR 520



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 98  KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KG P  +A Y +LI  +C + ++++A  ++D M + G   + + +  ++    +  +M++
Sbjct: 727 KGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDK 786

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
              +++ M    + P+   Y  ++  Y   G++   + +L +M  + +  D  TY+ L  
Sbjct: 787 VVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTN 846

Query: 217 GACRAGRVEEAFVL 230
           G C+ G++EE  +L
Sbjct: 847 GFCKEGKIEEGKLL 860



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 78/184 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I   CK  KI+E  ++   +      L+++ ++ ++    R     EA+ L
Sbjct: 661 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 720

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M+   + P    Y+ L+   C  G +     ++ +M +E L  +   Y AL+ G C+
Sbjct: 721 HDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCK 780

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++++   +L+ M          TY  ++    + G    A K +    G+ I  DT  
Sbjct: 781 LGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVT 840

Query: 281 FGSL 284
           +  L
Sbjct: 841 YNVL 844


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMI 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M+  G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLNVGLK 378



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LDKG  P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +
Sbjct: 233 LDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL 292

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL
Sbjct: 293 KQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTAL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M++ G      TY  ++    + G
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKG 395



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + +     S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 188 DEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK   + +A  ++D M   G     IT+  ++    +   +E A+  
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  +  D  AY  L++  C +G       +L++M    L  +  TY  ++   C+
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCK 393

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G V     LL+ M  DG
Sbjct: 394 KGDVWTGSKLLKEMQRDG 411



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+D G
Sbjct: 210 SVLINGLCKESKMDDANXLFDEMLDKG 236


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 96/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C    +D ALR  D M + G   + +T++ ++    + +++++ + L
Sbjct: 203 PNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFEL 262

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    + P+L +YN ++   C +G +   S VL +M +     D  TY+ L+ G C+
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCK 322

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G   +A V+   M+  G S    TY  ++ ++ + G   +A +F+     R +  +   
Sbjct: 323 EGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERT 382

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L          NEA  +LKEM
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLKEM 406



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 12/230 (5%)

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           SL    DLC + +         S +D ++    +L  ID+AL +V +    GF    +++
Sbjct: 122 SLQETYDLCNSTS---------SVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSY 172

Query: 142 HPILSVLTRGKR-MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           + +L    R KR +  A  + + M + +VSP++  YN L+  +C  GNL        +ME
Sbjct: 173 NAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRME 232

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           ++    +  TY+ L+ G C+  ++++ F LLR M   G      +Y  V+  L R G   
Sbjct: 233 KKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMK 292

Query: 261 QAVKFVMV-CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + + FV+     R   LD   + +L         F++A  +  EM +  L
Sbjct: 293 E-ISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL 341



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y TL+    +   ++EA RV+  M + GF  S +T++ +++      +M +A  +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAV 437

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E MKE  ++PD+ +Y+ +L+ +C   ++     V +KM  + +  D  TY +L+ G C 
Sbjct: 438 LEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCE 497

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             R +EA  L   M+  G      TY  ++ A    G   +A++ 
Sbjct: 498 QRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQL 542



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 87/199 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+TLI   CK     +AL +   M   G   S IT+  ++  + +   M  A   ++ M+
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMR 372

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P+   Y  L+  +  KG +     VLK+M +        TY+AL+ G C AG++ 
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMV 432

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  +L  M + G +    +Y+ V+    R     +A++       + IK DT  + SL 
Sbjct: 433 DAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLI 492

Query: 286 SKLIGLERFNEANFILKEM 304
                  R  EA  +  EM
Sbjct: 493 QGFCEQRRTKEACDLFDEM 511



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 15/153 (9%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y  LI   C    + +A+++ + M E G     +T+  +++ L +  R  EA  L
Sbjct: 518 PDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRL 577

Query: 161 M-EVMKEIRVSPDLTAYNY--------------LLTAYCFKGNLTATSGVLKKMEEEKLG 205
           + ++  E  V  D+T +                L+  +C KG +T    V + M E+   
Sbjct: 578 LLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHK 637

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            D   Y+ ++ G CR G + +A+ L + MV  G
Sbjct: 638 PDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSG 670



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 25/204 (12%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           + G  PDE T   Y  L+NA   E DL+    L N+           T++ + N  N  +
Sbjct: 513 RVGLPPDEFT---YTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQA 569

Query: 85  VLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
              +  R L +L  ++  P    Y TLI     +    E   VV ++   GF +  +   
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVTYHTLIENCSNI----EFKSVVSLIK--GFCMKGM--- 620

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
                      M EA  + E M E    PD TAYN ++  +C  G++     + K+M + 
Sbjct: 621 -----------MTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKS 669

Query: 203 KLGADARTYDALVLGACRAGRVEE 226
                  T  ALV    + G+V E
Sbjct: 670 GFLLHTVTVIALVKTLHKEGKVNE 693


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 96/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  LCK  K+ EA RV+  M   G     + +  ++    +   +  A+ L
Sbjct: 221 PNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRL 280

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M++ ++SPD   Y  ++   C  G +     +  +M  ++L  D  TY AL+ G C+
Sbjct: 281 FDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCK 340

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+++EAF L  +M+  G +    TY  +   L + G    A + +     + ++L+   
Sbjct: 341 EGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYT 400

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL + L      ++A  ++K+M
Sbjct: 401 YNSLVNGLCKAGNIDQAVKLMKDM 424



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L +      +++T   LL++  R        T+N + N       +    + 
Sbjct: 361 PNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKL 420

Query: 93  LARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +  ++  GF P    Y TL+   CK +++  A  ++  M +     + +TF+ +++    
Sbjct: 421 MKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCM 480

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              +E+   L++ M E  + P+ T YN L+  YC + N+ AT+ + + M  + +  D  T
Sbjct: 481 SGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNT 540

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           Y+ L+ G C+A  ++EA+ L R MV  G ++  S+Y     AL++ G+Y +
Sbjct: 541 YNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSY----NALIK-GFYKR 586



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 89/196 (45%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K +  L++++ M   G   +  T++ ++ +L +  ++ EA  ++  M    ++PD   Y 
Sbjct: 203 KGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYT 262

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C  GN+++   +  +M++ K+  D  TY A++ G C+ GRV EA  L   MV  
Sbjct: 263 TLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCK 322

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
                  TY  ++    + G   +A           +  +   + +L   L      + A
Sbjct: 323 RLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTA 382

Query: 298 NFILKEMNKRDLKMGF 313
           N +L EM ++ L++  
Sbjct: 383 NELLHEMCRKGLELNI 398



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 15/174 (8%)

Query: 74  NFITNTENSLSVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEA 122
           +FIT T    +V+  LC+T  +   DK F         P +  Y  LI   CK  K+ EA
Sbjct: 292 DFITYT----AVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEA 347

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
             + + M + G   + +T+  +   L +   ++ A  L+  M    +  ++  YN L+  
Sbjct: 348 FSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNG 407

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
            C  GN+     ++K ME      DA TY  L+   C++  +  A  LLR+M+D
Sbjct: 408 LCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLD 461



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LC+  ++ EA ++   M         +T+  ++    +  +M+EA+ L
Sbjct: 291 PDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSL 350

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M ++ ++P++  Y  L    C  G +   + +L +M  + L  +  TY++LV G C+
Sbjct: 351 HNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCK 410

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           AG +++A  L++ M   G      TY  +M A
Sbjct: 411 AGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDA 442


>gi|115482518|ref|NP_001064852.1| Os10g0476900 [Oryza sativa Japonica Group]
 gi|110289255|gb|AAP54273.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|110289256|gb|ABG66138.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113639461|dbj|BAF26766.1| Os10g0476900 [Oryza sativa Japonica Group]
 gi|215737151|dbj|BAG96080.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 599

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 6/270 (2%)

Query: 2   SLLRKLPTKFLIPQSVL-VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           +LL  L  K   PQ  L V    +  G  PD  T   Y+ L++A+     L   +++L +
Sbjct: 281 TLLVDLVCKNCGPQKALEVLDELSLEGCQPDVVT---YNALISASCKAGRLNDAKFILTR 337

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKK 118
            A +       T+  + +   ++    ++C  L  +++    P  + Y+  I   CK   
Sbjct: 338 LAAEGLEPNGTTYCILLHALCNMRRWDEVCDLLEDMNQVNRDPDVTTYNIFINYFCKYGH 397

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+A+ V++ M         +T + +L+ +++   +EEA G+   ++E      L  YN 
Sbjct: 398 LDQAIDVLERMVINNCSPDIVTCNTLLNAISKKGMVEEALGIARCIRENGYKLVLITYNT 457

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+ A   K  +     +  +M  + +  D  TY +LV+G C+    +EA  LL +M+  G
Sbjct: 458 LIDALAKKAEVKKAMVLFDEMLSDGISPDDITYGSLVMGFCKKDMADEALDLLNQMLTLG 517

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
             V  +T+  V+ AL R G    A +   V
Sbjct: 518 FEVKTTTFVMVIQALCRDGKVEAAAEITKV 547



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + +L VL +L      L+   P    Y+ LI   CK  ++++A  ++  +A  G   +  
Sbjct: 294 QKALEVLDEL-----SLEGCQPDVVTYNALISASCKAGRLNDAKFILTRLAAEGLEPNGT 348

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +L  L   +R +E   L+E M ++   PD+T YN  +  +C  G+L     VL++M
Sbjct: 349 TYCILLHALCNMRRWDEVCDLLEDMNQVNRDPDVTTYNIFINYFCKYGHLDQAIDVLERM 408

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
                  D  T + L+    + G VEEA  + R + ++G  ++  TY  ++ AL +    
Sbjct: 409 VINNCSPDIVTCNTLLNAISKKGMVEEALGIARCIRENGYKLVLITYNTLIDALAKKAEV 468

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLR 316
            +A+          I  D   +GSL       +  +EA  +L +M    L +GF+++
Sbjct: 469 KKAMVLFDEMLSDGISPDDITYGSLVMGFCKKDMADEALDLLNQM----LTLGFEVK 521



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 73/161 (45%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L  G P   + + LI +LC+  ++  AL+V++ M   G   S ITF+ ++  +   +  +
Sbjct: 200 LSGGVPDTISCNMLIAQLCRGGQLSSALQVLEDMRFSGCSPSGITFNTLIRCMFNQRMYD 259

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A    +    +   P       L+   C          VL ++  E    D  TY+AL+
Sbjct: 260 RAISFWKEQLRLGWPPYEMTSTLLVDLVCKNCGPQKALEVLDELSLEGCQPDVVTYNALI 319

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
             +C+AGR+ +A  +L R+  +G     +TY  ++ AL  +
Sbjct: 320 SASCKAGRLNDAKFILTRLAAEGLEPNGTTYCILLHALCNM 360



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 8/236 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLL---NKRARDCCFNTANTFNFITNTENSLSVLSD 88
           EP    Y  L++A  + R  + V  LL   N+  RD       T+N   N       L  
Sbjct: 344 EPNGTTYCILLHALCNMRRWDEVCDLLEDMNQVNRD---PDVTTYNIFINYFCKYGHLDQ 400

Query: 89  LCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
               L R+  +   P     +TL+  + K   ++EAL +   + E G+ L  IT++ ++ 
Sbjct: 401 AIDVLERMVINNCSPDIVTCNTLLNAISKKGMVEEALGIARCIRENGYKLVLITYNTLID 460

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L +   +++A  L + M    +SPD   Y  L+  +C K        +L +M       
Sbjct: 461 ALAKKAEVKKAMVLFDEMLSDGISPDDITYGSLVMGFCKKDMADEALDLLNQMLTLGFEV 520

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              T+  ++   CR G+VE A  + + M+        S  + ++  + + G+  +A
Sbjct: 521 KTTTFVMVIQALCRDGKVEAAAEITKVMLSKNSIPGNSLCSSIVTKVAKSGWNKEA 576



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 1/166 (0%)

Query: 99  GFPRKSAYDTLIGRL-CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           G+P      TL+  L CK     +AL V+D ++  G     +T++ ++S   +  R+ +A
Sbjct: 272 GWPPYEMTSTLLVDLVCKNCGPQKALEVLDELSLEGCQPDVVTYNALISASCKAGRLNDA 331

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++  +    + P+ T Y  LL A C          +L+ M +     D  TY+  +  
Sbjct: 332 KFILTRLAAEGLEPNGTTYCILLHALCNMRRWDEVCDLLEDMNQVNRDPDVTTYNIFINY 391

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            C+ G +++A  +L RMV +  S    T   ++ A+ + G   +A+
Sbjct: 392 FCKYGHLDQAIDVLERMVINNCSPDIVTCNTLLNAISKKGMVEEAL 437


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  KID A  + D M + G   + +T
Sbjct: 176 LGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVT 235

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +S DL  YN L+   C KG+L     ++ +M 
Sbjct: 236 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMR 295

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 296 MKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSV 355

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++          + +LKEM +
Sbjct: 356 DAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQR 401



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK  +I  A  V D + + G   S ++F+ +++   R   +
Sbjct: 120 LECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDL 179

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M    V PD+  Y+ L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 180 DEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTL 239

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +
Sbjct: 240 IDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLI 291



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    +L  +DE  R+   M   G      T+  +++ L +  +++ A  L
Sbjct: 161 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANEL 220

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L AD  TY+ L+ G C+
Sbjct: 221 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCK 280

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A +        +I+LD  +
Sbjct: 281 KGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVV 340

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 341 YTTLISGLCQEGRSVDAEKMLREMLSVGLK 370



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 20/217 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           ++A+G E D+ T   L+N   ++   + AN           + N     +++   C+   
Sbjct: 189 MHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKN-G 247

Query: 95  RLD------KGFPRKS------AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D      K    +S       Y+TLI  LCK   + +A  ++D M   G     IT+ 
Sbjct: 248 RVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYT 307

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D   Y  L++  C +G       +L++M   
Sbjct: 308 TLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSV 367

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
            L  D  TY  ++   C+ G V     LL+ M  DG 
Sbjct: 368 GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH 404



 Score = 37.7 bits (86), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 55/135 (40%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  + + E      L  +N L+
Sbjct: 76  DAIECYRLTREHKFWVPFDTCKKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILM 135

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C +G +     V   + +  L     +++ L+ G  R G ++E F L   M   G  
Sbjct: 136 HRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVE 195

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 196 PDVYTYSVLINGLCK 210


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 112/238 (47%), Gaps = 8/238 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y  L++    E  ++    LL++   + CF ++ TFN + N    L    D+ R
Sbjct: 204 EPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLIN---GLCKKGDMVR 260

Query: 92  TLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
               +D  F     P +  Y+T+I  LC   K+D+A+ ++D M       + +T+  +++
Sbjct: 261 VTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLIN 320

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L +  R  +   L+  ++E     +  AY+ L++    +       G+ KKM E+    
Sbjct: 321 GLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQP 380

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +   Y AL+ G CR G+++EA  +L  MV+ G +    TY+ ++    + G   +A++
Sbjct: 381 NIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR 438



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++ +I  +CKL  +D A+ V   MA         T+  ++  L +  R++EA  L
Sbjct: 170 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 229

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+     P    +N L+   C KG++   + ++  M  +    +  TY+ ++ G C 
Sbjct: 230 LDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCL 289

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++++A  LL RMV         TY  ++  L++ G     V  +     R    +   
Sbjct: 290 KGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYA 349

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L S L   E+  EA  + K+M
Sbjct: 350 YSTLISGLFKEEKSEEAMGLWKKM 373



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 128/337 (37%), Gaps = 48/337 (14%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           I ++VL+       G FP   +S  ++ L+N    + D+  V  L++      C     T
Sbjct: 223 IDEAVLLLDEMQIEGCFP---SSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVT 279

Query: 73  FNFITNTENSLSVLSDLCRTLARLD-----KGFPRKSAYDTLIGRLCKLKKIDEALRVVD 127
           +N I N    L +   L + ++ LD     K  P    Y TLI  L K  +  + + ++ 
Sbjct: 280 YNTIIN---GLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLS 336

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            + E G   +   +  ++S L + ++ EEA GL + M E    P++  Y+ L+   C +G
Sbjct: 337 SLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREG 396

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALV-------------------------------- 215
            L     +L +M  +    +A TY +L+                                
Sbjct: 397 KLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYS 456

Query: 216 ---LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCG 270
               G C  G++ EA ++   M+  G       Y+ ++  L   G     +K    M+C 
Sbjct: 457 VLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQ 516

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             D + D   +  L   L      + A  +L  M  R
Sbjct: 517 ESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDR 553



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           + K  P    Y TL+  LCK  +IDEA+ ++D M   G   S++TF+ +++ L +   M 
Sbjct: 200 IQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMV 259

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
               L++ M      P+   YN ++   C KG L     +L +M   K   +  TY  L+
Sbjct: 260 RVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLI 319

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G  + GR  +   LL  + + G       Y+ ++  L +     +A+        +  +
Sbjct: 320 NGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQ 379

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  ++ +L   L    + +EA  IL EM
Sbjct: 380 PNIVVYSALIDGLCREGKLDEAKEILCEM 408



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 140 TFHPILSVLTRGKRMEEAWGLME--VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           +F+ +L+V+ +      A    E  V  +  +SP++ ++N ++ A C  G +     V +
Sbjct: 137 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 196

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M  +K   D  TY  L+ G C+  R++EA +LL  M  +G      T+  ++  L + G
Sbjct: 197 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 256

Query: 258 YYAQAVKFV 266
              +  K V
Sbjct: 257 DMVRVTKLV 265



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 2/140 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI    K     +A+RV   MA+     + I +  ++  L    ++ EA  +
Sbjct: 415 PNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMM 474

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM--EEEKLGADARTYDALVLGA 218
              M    + PD+ AY+ ++   C  G++     +  +M  +E     D  TY+ L+   
Sbjct: 475 WTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRAL 534

Query: 219 CRAGRVEEAFVLLRRMVDDG 238
           C+   +  A  LL  M+D G
Sbjct: 535 CKQNSISHAIDLLNSMLDRG 554



 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 18/190 (9%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---------NTENS 82
           +P    Y  L++    E  L+  + +L +     C  T N F + +         N++ +
Sbjct: 379 QPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGC--TPNAFTYSSLIKGFFKTGNSQKA 436

Query: 83  LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           + V  ++ +     +   P +  Y  LI  LC+  K+ EA+ +   M   G     + + 
Sbjct: 437 IRVWKEMAK-----NNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYS 491

Query: 143 PILSVLTRGKRMEEAWGLMEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
            ++  L     +E    L   M  +E    PD+  YN LL A C + +++    +L  M 
Sbjct: 492 SMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSML 551

Query: 201 EEKLGADART 210
           +     D  T
Sbjct: 552 DRGCNPDLIT 561


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D A  + + M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 6/229 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDL 89
           PT+  ++ L+N      DL+    L N            T++ + N    E+ +   ++L
Sbjct: 169 PTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANEL 228

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
              +  LD G  P    + TLI   CK  ++D A+ +   M         IT++ ++  L
Sbjct: 229 FNEM--LDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +   +++A  L++ M    + PD   Y  L+   C +G+L       K+M +E +  D 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD 346

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
             Y AL+ G C+ GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK  +I  A  V D + + G   +A++F+ +++   R   +
Sbjct: 128 LECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKVTYTTL 317



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    +L  +DE  R+ + M   G      T+  +++ L +  +M+ A  L
Sbjct: 169 PTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 20/216 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANT-FN------FITNTENSLSVLSDLCRTLA 94
           + A+G + D+ T   L+N   ++   + AN  FN       + N     +++   C+   
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKN-G 255

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  ++D M+  G     +T+ 
Sbjct: 256 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  +  TY  ++   C+ G V     L++ M  DG
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411



 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEDSLECGYPASLYFFNILMHRFCKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             ++ A  + + + +  + P   ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  +++ A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMDYANELFNEMLDNG 236



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 55/135 (40%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E   E      L  +N L+
Sbjct: 84  DAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEDSLECGYPASLYFFNILM 143

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C +G +     V   + +  L   A +++ L+ G  R G ++E F L   M   G  
Sbjct: 144 HRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQ 203

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 204 PDVYTYSVLINGLCK 218


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 6/204 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y   I  LCK  +I EA+ +   M E G    + T++ +++ L +  ++E    LM+ M
Sbjct: 93  SYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEM 152

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +    SP +  Y  L+  +C  G + A   +L +ME   +  +  TY AL+ G C  G V
Sbjct: 153 QARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEV 212

Query: 225 EEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTEL 280
           E A ++L+ M   G     +  TY  ++  L + G +   ++F+  M+  G     +   
Sbjct: 213 ERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISG--CFPNNAT 270

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L   L     F EA  +L EM
Sbjct: 271 YTALIHGLCQKGSFLEAAVLLNEM 294



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 5/201 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK  +++  + ++D M   GF  + +T+  ++       R++ A  +
Sbjct: 124 PDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDI 183

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME--EEKLGADARTYDALVLGA 218
           ++ M+   ++P+   Y  L+   C  G +     VLK+M+    +   +  TY  L+ G 
Sbjct: 184 LDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGL 243

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+ G  E     L  M+  G     +TY  ++  L + G + +A   +        +LD 
Sbjct: 244 CQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDV 303

Query: 279 ELFGSLGSKLIGLERFNEANF 299
            ++ SL   + GL +  E +F
Sbjct: 304 VIYNSL---IDGLCKMGELDF 321



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 14/215 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNK---RARDCCFNTANTFNFITNT------ENSL 83
           P +  Y  L+       ++E    +L +   R  +CC N       I         E  +
Sbjct: 194 PNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGM 253

Query: 84  SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
             L ++      +   FP  + Y  LI  LC+     EA  +++ M   G  L  + ++ 
Sbjct: 254 EFLDEMI-----ISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNS 308

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++  L +   ++ A  +  +M E  V+PD+  Y  L+   C  G L    G++++M  + 
Sbjct: 309 LIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKG 368

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +  ++ TY  L+ G  +A R + A  L+  M  +G
Sbjct: 369 IVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNG 403



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R ++  P    Y  LI  LC+    +  +  +D M   G   +  T+  ++  L +    
Sbjct: 225 RGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSF 284

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L+  M  I    D+  YN L+   C  G L     +   M E+ +  D  TY +L
Sbjct: 285 LEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSL 344

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
           + G C AG ++EA  L++ M   G    SV Y+T
Sbjct: 345 IQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTT 378



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 55/125 (44%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           I++   ++ L +  ++ EA  +   M+E   +PD   YN L+   C    L     ++ +
Sbjct: 92  ISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDE 151

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M+         TY  L+ G C AGRV+ A  +L  M   G +    TY  ++  L   G 
Sbjct: 152 MQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGE 211

Query: 259 YAQAV 263
             +A+
Sbjct: 212 VERAI 216



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 58/136 (42%)

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           D+ +Y+  +   C KG +     + ++MEE+    D+ TY+ L+ G C+  ++E    L+
Sbjct: 90  DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
             M   G S    TY  ++      G    A+  +     R I  +T  + +L   L   
Sbjct: 150 DEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDC 209

Query: 292 ERFNEANFILKEMNKR 307
                A  +LKEM  R
Sbjct: 210 GEVERAILVLKEMKLR 225



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 98/250 (39%), Gaps = 38/250 (15%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P    Y TLI   C   ++D A+ ++D M   G   + +T+  ++  L     +E 
Sbjct: 155 RGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVER 214

Query: 157 A-------------------------WGL---------MEVMKEIRVS---PDLTAYNYL 179
           A                          GL         ME + E+ +S   P+   Y  L
Sbjct: 215 AILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTAL 274

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C KG+    + +L +M       D   Y++L+ G C+ G ++ A  +   MV+ G 
Sbjct: 275 IHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGV 334

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +    TY  ++  L   G   +A+  +     + I  ++  + +L +     +R + A  
Sbjct: 335 APDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQ 394

Query: 300 ILKEMNKRDL 309
           ++ EM    L
Sbjct: 395 LVNEMKSNGL 404



 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 7/160 (4%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           SG FP+   +A Y  L++    +        LLN+     C      +N + +    +  
Sbjct: 262 SGCFPN---NATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGE 318

Query: 86  LSDLCRTLARL--DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           L D  R +  L  +KG  P    Y +LI  LC    +DEAL ++  M   G   +++T+ 
Sbjct: 319 L-DFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYT 377

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
            +++  T+  R + A  L+  MK   + P    Y  L  +
Sbjct: 378 TLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKILFKS 417


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 84/164 (51%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           K  ++ +I  LCKL ++ +A  + + +   GF     T+  ++   +    ++ A+GL +
Sbjct: 646 KIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRD 705

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M   R++P++  YN L+   C   N++    +  K++ + +  +A TY+ L+ G C+ G
Sbjct: 706 EMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDG 765

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
              EAF L ++M+ +G      TY  ++  L   GY  +A+K +
Sbjct: 766 NTTEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLL 809



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 119/289 (41%), Gaps = 31/289 (10%)

Query: 8   PTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYD-----------DLVNAAGHERDLETVRY 56
           PT F  P  V V + F+ S A  D    A+ D           D +  AG  R L +   
Sbjct: 77  PTLF--PDLVEVYKDFSFSAASFDLLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNR 134

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKL 116
           LLN+  +     TA            ++V   +     R     P       +    C+ 
Sbjct: 135 LLNQLVQAGDIGTA------------VAVFQQM-----RCAGTLPDDFTVAIMAKAYCRD 177

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
            ++  A   +  M E G  ++ + +H ++    R  + E A  L+  ++   +SP++  Y
Sbjct: 178 GRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVKGLSPNVVTY 237

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEE-EKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
             L+  YC +G +     V+K+++E EK+  D   Y AL+ G C+ GR+E+A  +   M+
Sbjct: 238 TLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMI 297

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           D G  V    Y  ++    +LG   +  K +     R + LD   + +L
Sbjct: 298 DAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTL 346



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 4/177 (2%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P    Y +LI        ID A  + D M       + +T++ ++  L +   +  
Sbjct: 675 KGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSR 734

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L   ++   +SP+   YN L+  +C  GN T    + +KM +E +     TY  L+ 
Sbjct: 735 AVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFTYTILIH 794

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF---VMVCG 270
           G C  G +EEA  LL +M+++     + TY  ++    R G      K    + +CG
Sbjct: 795 GLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQGYARCGNMKAITKLYNEMHICG 851



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 2/223 (0%)

Query: 84  SVLSDLCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           SV   L   L  + K F   +A +D L+       ++ +AL V D M + G   +  + +
Sbjct: 74  SVAPTLFPDLVEVYKDFSFSAASFDLLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCN 133

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +L+ L +   +  A  + + M+     PD      +  AYC  G +   +  LK+MEE 
Sbjct: 134 RLLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEM 193

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            L  +   Y A++ G CR G+ E A  LL  +   G S    TY  ++    + G   +A
Sbjct: 194 GLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEA 253

Query: 263 VKFVM-VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            K V  +     I +D   +G+L +      R  +AN +  EM
Sbjct: 254 EKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEM 296



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 116/271 (42%), Gaps = 16/271 (5%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPT-----SAYYDD--LVNAAGHERDLETVR 55
           LL +L     I  +V V +    +G  PD+ T      AY  D  + +AA   +++E + 
Sbjct: 135 LLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMG 194

Query: 56  YLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCK 115
             +N  A        + +  I  TE +  +L  L     ++    P    Y  L+   CK
Sbjct: 195 LDVNLVAYHA---VMDGYCRIGQTEVARKLLHSL-----QVKGLSPNVVTYTLLVKGYCK 246

Query: 116 LKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
             +++EA +VV +I       +  + +  +++   +  RME+A  + + M +  V  ++ 
Sbjct: 247 EGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMF 306

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            YN ++  YC  G +     +L+  E   +  D  +Y+ LV G CR G + +AF     M
Sbjct: 307 VYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMM 366

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           V +G +    TY  ++      G    A+K 
Sbjct: 367 VRNGFTGTTLTYNTLLNGFCSRGAIDDALKL 397



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 4/135 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY  LI   C+  ++++A RV D M + G  ++   ++ +++   +  RM E   L++  
Sbjct: 272 AYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQAN 331

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +   V+ D  +YN L+  YC KG +T        M          TY+ L+ G C  G +
Sbjct: 332 EYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAI 391

Query: 225 EEA----FVLLRRMV 235
           ++A    F++L+R V
Sbjct: 392 DDALKLWFLMLKRGV 406



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 35/173 (20%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P + +  TL+    K  K ++AL +       G   + +T + +++ L + +RM EA  L
Sbjct: 408 PNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAEEL 467

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE------------------- 201
              MKE     D   Y  L+  YC  G+L   + +  +ME                    
Sbjct: 468 FHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFI 527

Query: 202 ----------------EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
                           + L  +  TY AL+ G C+ G + +A +L   MV+ G
Sbjct: 528 AKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKG 580



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 88/205 (42%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+TL+   C+   + +A    D+M   GF  + +T++ +L+       +++A  L  +M
Sbjct: 342 SYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLM 401

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V P+  + + LL  +   G       + K+     L  +  T + ++ G C+  R+
Sbjct: 402 LKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRM 461

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EA  L  RM +        TY  ++    +LG   +A +  +           E+F S 
Sbjct: 462 TEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSF 521

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            + L   ++  + N I  EM+ + L
Sbjct: 522 ITGLFIAKQSGKVNDIRVEMSAKGL 546



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI   CKL  +  A ++   M   GF  S   F+  ++ L   K+  +   +   M 
Sbjct: 483 YRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMS 542

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +SP+   Y  L+  +C +GNL     +  +M E+ L  +      LV    R G+V+
Sbjct: 543 AKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVD 602

Query: 226 EAFVLLRRMVD 236
           EA ++L+++ D
Sbjct: 603 EANLVLQKLAD 613



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 66/148 (44%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
            I +   +++ +A G    + I ++ ++  L +  R+ +A  L E +K     PD   Y+
Sbjct: 626 NIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYS 685

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+      G++    G+  +M   +L  +  TY++L+ G C++  V  A  L  ++   
Sbjct: 686 SLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSK 745

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           G S    TY  ++    + G   +A K 
Sbjct: 746 GISPNAITYNTLIDGHCKDGNTTEAFKL 773


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 1/167 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C + ++D+A+ ++D M   G     ++++ ++ +L R KR+ E   L
Sbjct: 349 PNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIREL 408

Query: 161 MEVMK-EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ M+ + ++ PD   YN L+      G+      +L++ E+ +   D   Y A+V   C
Sbjct: 409 IKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYC 468

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G++++A  L+  M   G      TY  V+    R+G   QA K +
Sbjct: 469 KEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMM 515



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 9/229 (3%)

Query: 83  LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           L+ + +L + +    K  P    Y++LI  L K    DEAL ++    +  F +  + + 
Sbjct: 402 LNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYS 461

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            I+    +  ++++A  L+  M      PD+  Y  +L  +C  G L     ++++M + 
Sbjct: 462 AIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKH 521

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS----TYAHVMGALLRLGY 258
               +A TY   + G CR G+  EA    R+M++  +   ++    TY+ V+  L R G 
Sbjct: 522 HCKPNAVTYTTFLNGLCRNGKSLEA----RKMMNMSEEEWWTPNAITYSVVVHGLRREGK 577

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE-MNK 306
             +A   V    G+    +      L   L    +  EAN +LKE MNK
Sbjct: 578 LNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNK 626



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 8/235 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
           +P +  Y   +N           R ++N    +     A T++ + +    E  L+   D
Sbjct: 524 KPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACD 583

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           + R +  + KGF P     + L+  LC+  K  EA +++      G  ++ + F  ++  
Sbjct: 584 VVREM--IGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHG 641

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             +   +E A  L++ M      PD   Y  L+ A      +   + +  KM  + L   
Sbjct: 642 FCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPS 701

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             TY +++   CR GRVE+   LL++M+   +S   + Y  V+  L + GY  +A
Sbjct: 702 PVTYRSVIHQYCRKGRVEDLLKLLKKML--LKSRFQTAYNLVIEKLCKFGYLEEA 754



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 69/141 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +++   C++ K+D+A +++  M +     +A+T+   L+ L R  +  EA  +
Sbjct: 490 PDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKM 549

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M + +E   +P+   Y+ ++     +G L     V+++M  +    +    + LV   CR
Sbjct: 550 MNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCR 609

Query: 221 AGRVEEAFVLLRRMVDDGQSV 241
            G+  EA  LL+  ++ G +V
Sbjct: 610 DGKPREANQLLKECMNKGCAV 630



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 100/242 (41%), Gaps = 6/242 (2%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           LV+  F+K G  PD  T   Y  +++       L+  + ++ +  +  C   A T+    
Sbjct: 479 LVSEMFSK-GCDPDVVT---YTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFL 534

Query: 78  N--TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N    N  S+ +     ++  +   P    Y  ++  L +  K++EA  VV  M   GF 
Sbjct: 535 NGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFF 594

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +  + ++  L R  +  EA  L++       + ++  +  ++  +C K +L A   +
Sbjct: 595 PNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSL 654

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L  M       D  TY AL+    +  R+EEA  L  +M+  G      TY  V+    R
Sbjct: 655 LDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCR 714

Query: 256 LG 257
            G
Sbjct: 715 KG 716



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 67/152 (44%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y  ++  L K K    A R++ +M      L    F  ++   +R  R+ +A  ++ +
Sbjct: 247 SVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVMVSYSRAGRLRDAMKVLTL 306

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M++  V P+L+  N  +        L       ++M    +  +  TY+ L+ G C   +
Sbjct: 307 MQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQ 366

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           V++A  L+ +M   G S    +Y  VMG L R
Sbjct: 367 VDQAMELIDQMPSKGCSPDKVSYYTVMGLLCR 398



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 19/183 (10%)

Query: 66  CFN---TANTFNFIT---------NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRL 113
           C N     N  NF T         + E +LS+L D+      L    P    Y  LI  L
Sbjct: 623 CMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDM-----YLCNKHPDTVTYTALIDAL 677

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
            K  +I+EA  +   M   G   S +T+  ++    R  R+E+   L  + K +  S   
Sbjct: 678 AKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDL--LKLLKKMLLKSRFQ 735

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
           TAYN ++   C  G L   + +L ++       DA+T   L+      G    A+ +  R
Sbjct: 736 TAYNLVIEKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLNVGIPMSAYKVACR 795

Query: 234 MVD 236
           M +
Sbjct: 796 MFN 798


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 74/155 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LCK  KI  AL++VD M + G   + +T+  IL  L +  +++ A  L
Sbjct: 280 PNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIAL 339

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK   + P++  Y  L+   C  G L     V + +  +    +  TY  ++ G C 
Sbjct: 340 LTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCD 399

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G  +EA  LL +M D+G      TY  ++ +L +
Sbjct: 400 KGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFK 434



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 79/155 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+   CK  ++ EA  V+ +M   G     +T++ ++      K++ +A  +
Sbjct: 175 PDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSI 234

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M ++ VSPD+ +Y+ L+  +C    +     +LK+M  +++  +  TY +L+ G C+
Sbjct: 235 FNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCK 294

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +G++  A  L+  M D GQ     TY+ ++ AL +
Sbjct: 295 SGKISYALKLVDEMHDRGQPPNIVTYSSILDALCK 329



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 85/173 (49%), Gaps = 1/173 (0%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
            T+A+L    P   +Y  LI   CK+K +DEA+ ++  M       + +T+  ++  L +
Sbjct: 236 NTMAQLGVS-PDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCK 294

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++  A  L++ M +    P++  Y+ +L A C    +     +L +M+ + +  +  T
Sbjct: 295 SGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYT 354

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           Y  L+ G C++G++E+A  +   ++  G ++   TY  ++      G + +A+
Sbjct: 355 YTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEAL 407



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 79/164 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++L+     +K++++A  + + MA+ G      ++  +++   + K M+EA  L
Sbjct: 210 PGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMEL 269

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M   ++ P++  Y+ L+   C  G ++    ++ +M +     +  TY +++   C+
Sbjct: 270 LKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCK 329

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +V+ A  LL +M + G      TY  ++  L + G    A K
Sbjct: 330 NHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARK 373



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 117/291 (40%), Gaps = 14/291 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRA-RDCCFNTANTFNFITNTENSLSVLSDLCR 91
           P +  ++ ++ +    +   TV YL  K   R    N  N  N + N+   L  +     
Sbjct: 60  PPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNC-NILINSFCQLGHIPSAFS 118

Query: 92  TLARLDK-GF-PRKSAYDTLIGRLC----------KLKKIDEALRVVDIMAEGGFGLSAI 139
            L ++ K G+ P     +TLI  LC           + K+ +A+ + + M          
Sbjct: 119 VLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVY 178

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF  ++    +  R++EA  ++ +M    + P +  YN L+  Y     +     +   M
Sbjct: 179 TFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTM 238

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            +  +  D ++Y  L+ G C+   ++EA  LL+ M          TY+ ++  L + G  
Sbjct: 239 AQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKI 298

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + A+K V     R    +   + S+   L    + + A  +L +M  + ++
Sbjct: 299 SYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQ 349



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 97  DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G P     Y +++  LCK  ++D A+ ++  M   G   +  T+  ++  L +  ++E
Sbjct: 310 DRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLE 369

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  + E +     + ++  Y  ++  +C KG       +L KME+     +A+TY+ ++
Sbjct: 370 DARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIII 429

Query: 216 LGACRAGRVEEAFVLLRRMVD---DGQSVL 242
           L   +    E A  LL  M++   DG+  L
Sbjct: 430 LSLFKKDENEMAEKLLCEMIETNFDGRVAL 459



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 56/118 (47%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+A+ + + + +       I F+ IL  L + K       L + M+   + P+L   N 
Sbjct: 43  VDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 102

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           L+ ++C  G++ +   VL K+ +     +  T + L+ G C  G++ +   ++ ++ D
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKD 160


>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 805

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TLI   CK  ++  A +++D M + G   + IT++ +L  L +   +++A  L
Sbjct: 428 PNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIAL 487

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +   K+  + PD+  YN L+   C +G L     + + +  +       TY+ ++ G C 
Sbjct: 488 VNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCL 547

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G ++EA  LL +M D+G      TY  ++ AL       +A K V
Sbjct: 548 EGLLDEAETLLSKMEDNGCIPDVVTYQTIIHALFEKDENDKAEKLV 593



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 29/229 (12%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME-- 162
            Y  LI  LCK+ +   AL+V+  +       + + +  ++  L + K + +A+GL    
Sbjct: 298 TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTVIDGLCKDKLVIDAYGLYSEM 357

Query: 163 VMKEI-------------------RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++K I                    ++P++  +N L+ A C  G +     V+ KM +E 
Sbjct: 358 IVKRIPPTVVTFKAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEA 417

Query: 204 LG--------ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L          +  +Y+ L+ G C++GR+  A+ LL +M D GQ     TY  ++ AL +
Sbjct: 418 LNLFTEMHCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCK 477

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +  +A+  V     + I+ D   + +L   L    R  +A  I +++
Sbjct: 478 NHHVDKAIALVNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDL 526


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           LCR L    +G  P    Y+ L+   C+      A ++V  M E G   S +T+  ++  
Sbjct: 360 LCRDLK--SRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             R   ME A  L   M+E+ + PD+  Y+ L+  +C KG +   S + K M E+ L  +
Sbjct: 418 FARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPN 477

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              Y+ ++LG C+ G    A  L R M +   +   ++Y++++  L +
Sbjct: 478 EVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCK 525



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 94/211 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+ ++ +LCK  +  +A +V D M E G   + +T++ ++  L R  +  EA  
Sbjct: 265 FPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANK 324

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +M+ MK   ++P+L  YN L+  +C  G L     + + ++   L     TY+ LV G C
Sbjct: 325 VMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFC 384

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R G    A  +++ M + G      TY  ++    R      A++         +  D  
Sbjct: 385 RKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVH 444

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +  L        + NEA+ + K M ++ L+
Sbjct: 445 TYSVLIHGFCIKGQMNEASRLFKSMVEKMLE 475



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 66/138 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y  LI    +   ++ A+++   M E G      T+  ++       +M EA  L
Sbjct: 406 PSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  + P+   YN ++  YC +G+      + + MEE++L  +  +Y  L+   C+
Sbjct: 466 FKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCK 525

Query: 221 AGRVEEAFVLLRRMVDDG 238
             +++EA  L+ +M+D G
Sbjct: 526 ERKLKEAEDLVEKMIDSG 543



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  LI  L K     +   + + M E G   +  T++ +++ L +  R ++A+ + + M
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +E  VS ++  YN L+   C +      + V+ +M+   +  +  TY+ L+ G C  G++
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKL 354

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            +A  L R +   G S    TY  ++    R G  + A K V     R IK
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIK 405



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 135/343 (39%), Gaps = 44/343 (12%)

Query: 6   KLPTKFLIPQSVL--VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR 63
           K+ ++F    S+L  +T S T       +  S  Y+ ++NA    + L++  Y  N+   
Sbjct: 69  KIQSQFFTSSSLLHYLTESET------SKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVD 122

Query: 64  ------DCCFNTANTFNFITNT---------ENSLSVLSDL---------CRTLARLDKG 99
                   CFN   TF   +++         E+ + V+ D+         C     ++K 
Sbjct: 123 KGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKS 182

Query: 100 F------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           F            P    Y TLI   CK  +I++A  +   M + G   +  T+  ++  
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHG 242

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L +    ++ + + E M+E  V P+L  YN ++   C  G       V  +M E  +  +
Sbjct: 243 LFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCN 302

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY+ L+ G CR  +  EA  ++ +M     +    TY  ++     +G   +A+    
Sbjct: 303 IVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCR 362

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               R +      +  L S        + A  ++KEM +R +K
Sbjct: 363 DLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIK 405


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 184 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  +   L + G   
Sbjct: 304 VKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSV 363

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D   +  + ++        + + +LKEM +
Sbjct: 364 DAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 409



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 64/139 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK   + +A  ++D M+  G     IT+  ++    +   ++ A+  
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEH 333

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  +  D  AY  L +  C +G       +L++M    L  DARTY  ++   C+
Sbjct: 334 RKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 393

Query: 221 AGRVEEAFVLLRRMVDDGQ 239
            G V +   LL+ M  DG 
Sbjct: 394 KGDVWKGSKLLKEMQRDGH 412



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 22/224 (9%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E + E      L  +N L+
Sbjct: 84  DAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM 143

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +Y+ L+ G  R G ++E F L   M+  G  
Sbjct: 144 HRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ 203

Query: 241 VLYSTYAHVMGAL----------------LRLGYYAQAVKFVMV----CGGRDIKLDTEL 280
               TY+ ++  L                L  G     V F  +    C    + L  E+
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINVK 324
           +  + S+ +  +       I     K DLK    L D  E++VK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID--EMSVK 305



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 87/221 (39%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 88  CYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 147

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 148 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 207

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C+  ++++A  L   M+  G      T+  ++    + G    A++     
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + +  D   + +L   L       +A+ ++ EM+ + LK
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 308


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 1/200 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI  LC+ + + EAL +V +M   G  L+  T+  ++  L +  R+ +A GL++ M
Sbjct: 251 SYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEM 310

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V P +  YN ++  YC  G +    G+   ME+     D  TY++L+ G C  G++
Sbjct: 311 PLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKL 369

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA  LL   +  G +    T+ +++    +      A++        + KLD + +G L
Sbjct: 370 DEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVL 429

Query: 285 GSKLIGLERFNEANFILKEM 304
            + LI   R  EA   L EM
Sbjct: 430 INVLIKKCRLKEAKETLNEM 449



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  L+  LCK KK++EAL ++D M   G   + + +  I+S + +  + + A  L   M 
Sbjct: 633 YSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMI 692

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                P  T Y   +++YC  G +     ++ +ME + +  D  TY+  + G    G ++
Sbjct: 693 SSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYID 752

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            AF  L+RMVD        TY  ++   L++
Sbjct: 753 RAFSTLKRMVDASCEPNCWTYWLLLKHFLKM 783



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 2/208 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P    +  LI   CK ++ID+ALRV   M      L    +  +++VL +  R++E
Sbjct: 382 RGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKE 441

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A   +  M    ++P++  Y  ++  YC  G + A   V K ME E    +A TY +L+ 
Sbjct: 442 AKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIY 501

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G  +  ++ +A  L+ +M +DG +    TY  ++    +   +  A +   +     +  
Sbjct: 502 GLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTP 561

Query: 277 DTELFGSLGSKLIGLERFNEA-NFILKE 303
           D + +  L   L    R  EA +F++++
Sbjct: 562 DEQAYNVLTDALCKSGRAEEAYSFLVRK 589



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 11/199 (5%)

Query: 74  NFITNTENSLSVLSD-LCRTLARLDKGFP---------RKSAYDTLIGRLCKLKKIDEAL 123
           N +T  E + +VL+D LC++  R ++ +           K  Y +L+    K    D A 
Sbjct: 557 NGLTPDEQAYNVLTDALCKS-GRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAA 615

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +++ M   G      T+  +L  L + K++ EA  +++ M    V  ++ AY  +++  
Sbjct: 616 VLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEM 675

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
             +G       +  +M        A TY   +   C+ GR+EEA  L+  M  DG +   
Sbjct: 676 IKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDV 735

Query: 244 STYAHVMGALLRLGYYAQA 262
            TY   +     +GY  +A
Sbjct: 736 VTYNIFINGCGHMGYIDRA 754



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 1/155 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC   K+DEA  +++     GF  + ITF  +++   + +R+++A  +
Sbjct: 352 PDDWTYNSLIYGLCG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRV 410

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M       DL AY  L+     K  L      L +M    L  +  TY +++ G C+
Sbjct: 411 KSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCK 470

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G V  A  + + M  +G      TY  ++  L++
Sbjct: 471 VGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQ 505



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 96/237 (40%), Gaps = 22/237 (9%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY  +I  + K  K D A  + + M   G   SA T+   +S   +  R+EEA  L+  M
Sbjct: 667 AYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEM 726

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +   V+PD+  YN  +      G +      LK+M +     +  TY  L+    +   +
Sbjct: 727 ERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLI 786

Query: 225 EEAFV----------------LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
              +V                LL RM+  G +    TY+ ++    +     +A   +  
Sbjct: 787 NAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDH 846

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF--KLRDYYEINV 323
             G+DI  + E++  L      ++ F +A   + +M    ++ GF  +L  Y+ + V
Sbjct: 847 MLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDM----IEFGFQPQLESYHYLIV 899



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 88/212 (41%), Gaps = 1/212 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I   CK  ++ +AL +  +M + G      T++ ++  L  GK ++EA  L
Sbjct: 317 PSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGK-LDEAEEL 375

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +        +P +  +  L+  YC    +     V   M       D + Y  L+    +
Sbjct: 376 LNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIK 435

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R++EA   L  M  +G +    TY  ++    ++G    A++   +        +   
Sbjct: 436 KCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWT 495

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
           +GSL   LI  ++ ++A  ++ +M +  +  G
Sbjct: 496 YGSLIYGLIQDKKLHKAMALITKMQEDGITPG 527



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 5/194 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I   CK   +  A R   ++ E G  +   T + +L    R   + +A  
Sbjct: 176 LPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACW 235

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+ +M  +    +  +Y  L+   C    +     ++  M  +    +  TY  L+ G C
Sbjct: 236 LLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLC 295

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA--VKFVMV---CGGRDI 274
           + GR+ +A  LL  M   G      TY  ++    + G    A  +K +M    C   D 
Sbjct: 296 KEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDW 355

Query: 275 KLDTELFGSLGSKL 288
             ++ ++G  G KL
Sbjct: 356 TYNSLIYGLCGGKL 369



 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 55/129 (42%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           + + G     +T++ ++    +   +  A     +++E  +  D    N LL  YC   +
Sbjct: 170 LVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSD 229

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L     +L  M       +  +Y  L+ G C A  V EA VL+  MV DG S+   TY  
Sbjct: 230 LRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTL 289

Query: 249 VMGALLRLG 257
           ++  L + G
Sbjct: 290 LIKGLCKEG 298


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 144/307 (46%), Gaps = 18/307 (5%)

Query: 6   KLPTKFLIPQS-VLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD 64
           +L  + +I +S ++V R++ K+   PD+    ++  +V+    +R +++   +LN    +
Sbjct: 104 RLENRVIIERSFIVVFRAYGKA-HLPDKAVDLFHR-MVDEFRCKRSVKSFNSVLNVIINE 161

Query: 65  CCFNTANTF-NFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEAL 123
             ++    F +++ N+  ++++               P   +++ +I  LCKL+ +D A+
Sbjct: 162 GLYHRGLEFYDYVVNSNMNMNI--------------SPNGLSFNLVIKALCKLRFVDRAI 207

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            V   M E        T+  ++  L + +R++EA  L++ M+    SP    YN L+   
Sbjct: 208 EVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGL 267

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C KG+LT  + ++  M  +    +  TY+ L+ G C  G++++A  LL RMV        
Sbjct: 268 CKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPND 327

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++  L++      AV+ +     R   L+  ++  L S L    +  EA  + ++
Sbjct: 328 VTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRK 387

Query: 304 MNKRDLK 310
           M ++  K
Sbjct: 388 MAEKGCK 394



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 123/294 (41%), Gaps = 5/294 (1%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           I ++VL+       G     P+   Y+ L++    + DL  V  L++      C     T
Sbjct: 238 IDEAVLLLDEMQSEGC---SPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVT 294

Query: 73  FNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           +N + +       L      L R+   K  P    Y TLI  L K ++  +A+R++  M 
Sbjct: 295 YNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSME 354

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           E G+ L+   +  ++S L +  + EEA  L   M E    P++  Y+ L+   C +G   
Sbjct: 355 ERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPN 414

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               +L +M       +A TY +L+ G  + G  EEA  + + M   G S     Y+ ++
Sbjct: 415 EAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLI 474

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             L  +G   +A+          IK DT  + S+   L G+   + A  +  EM
Sbjct: 475 DGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEM 528



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 2/266 (0%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD--K 98
           ++N   + R LE   Y++N            +FN +      L  +         +   K
Sbjct: 158 IINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERK 217

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
             P    Y TL+  LCK ++IDEA+ ++D M   G   S + ++ ++  L +   +    
Sbjct: 218 CLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVT 277

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L++ M      P+   YN L+   C KG L     +L++M   K   +  TY  L+ G 
Sbjct: 278 KLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGL 337

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            +  R  +A  LL  M + G  +    Y+ ++  L + G   +A+        +  K + 
Sbjct: 338 VKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNI 397

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
            ++  L   L    + NEA  IL  M
Sbjct: 398 VVYSVLVDGLCREGKPNEAKEILNRM 423



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y +L+    K    +EA++V   M + G   +   +  ++  L    R++EA  
Sbjct: 429 LPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMM 488

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM---EEEKLGADARTYDALVL 216
           +   M  I + PD  AY+ ++   C  G++ A   +  +M   EE K   D  TY+ L+ 
Sbjct: 489 VWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLD 548

Query: 217 GACRAGRVEEAFVLLRRMVDDG 238
           G C    +  A  LL  M+D G
Sbjct: 549 GLCMQKDISRAVDLLNSMLDRG 570



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 14/216 (6%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  LV+    E      + +LN+     C   A T++ +        +  +  +
Sbjct: 394 KPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453

Query: 92  TLARLDK-GFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               +DK G  R K  Y  LI  LC + ++ EA+ V   M   G     + +  I+  L 
Sbjct: 454 VWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLC 513

Query: 150 RGKRMEEAWGL---MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
               M+ A  L   M   +E +  PD+  YN LL   C + +++    +L  M +     
Sbjct: 514 GIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDP 573

Query: 207 DARTYDALV------LGACRAGR--VEEAFV-LLRR 233
           D  T +  +        +C  GR  +EE  V LL+R
Sbjct: 574 DVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKR 609


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 112/238 (47%), Gaps = 8/238 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y  L++    E  ++    LL++   + CF ++ TFN + N    L    D+ R
Sbjct: 220 EPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLIN---GLCKKGDMVR 276

Query: 92  TLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
               +D  F     P +  Y+T+I  LC   K+D+A+ ++D M       + +T+  +++
Sbjct: 277 VTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLIN 336

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L +  R  +   L+  ++E     +  AY+ L++    +       G+ KKM E+    
Sbjct: 337 GLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQP 396

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +   Y AL+ G CR G+++EA  +L  MV+ G +    TY+ ++    + G   +A++
Sbjct: 397 NIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR 454



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++ +I  +CKL  +D A+ V   MA         T+  ++  L +  R++EA  L
Sbjct: 186 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 245

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+     P    +N L+   C KG++   + ++  M  +    +  TY+ ++ G C 
Sbjct: 246 LDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCL 305

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++++A  LL RMV         TY  ++  L++ G     V  +     R    +   
Sbjct: 306 KGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYA 365

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L S L   E+  EA  + K+M
Sbjct: 366 YSTLISGLFKEEKSEEAMGLWKKM 389



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 128/337 (37%), Gaps = 48/337 (14%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           I ++VL+       G FP   +S  ++ L+N    + D+  V  L++      C     T
Sbjct: 239 IDEAVLLLDEMQIEGCFP---SSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVT 295

Query: 73  FNFITNTENSLSVLSDLCRTLARLD-----KGFPRKSAYDTLIGRLCKLKKIDEALRVVD 127
           +N I N    L +   L + ++ LD     K  P    Y TLI  L K  +  + + ++ 
Sbjct: 296 YNTIIN---GLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLS 352

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            + E G   +   +  ++S L + ++ EEA GL + M E    P++  Y+ L+   C +G
Sbjct: 353 SLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREG 412

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALV-------------------------------- 215
            L     +L +M  +    +A TY +L+                                
Sbjct: 413 KLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYS 472

Query: 216 ---LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCG 270
               G C  G++ EA ++   M+  G       Y+ ++  L   G     +K    M+C 
Sbjct: 473 VLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQ 532

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             D + D   +  L   L      + A  +L  M  R
Sbjct: 533 ESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDR 569



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           + K  P    Y TL+  LCK  +IDEA+ ++D M   G   S++TF+ +++ L +   M 
Sbjct: 216 IQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMV 275

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
               L++ M      P+   YN ++   C KG L     +L +M   K   +  TY  L+
Sbjct: 276 RVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLI 335

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G  + GR  +   LL  + + G       Y+ ++  L +     +A+        +  +
Sbjct: 336 NGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQ 395

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  ++ +L   L    + +EA  IL EM
Sbjct: 396 PNIVVYSALIDGLCREGKLDEAKEILCEM 424



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 140 TFHPILSVLTRGKRMEEAWGLME--VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           +F+ +L+V+ +      A    E  V  +  +SP++ ++N ++ A C  G +     V +
Sbjct: 153 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 212

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M  +K   D  TY  L+ G C+  R++EA +LL  M  +G      T+  ++  L + G
Sbjct: 213 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 272

Query: 258 YYAQAVKFV 266
              +  K V
Sbjct: 273 DMVRVTKLV 281



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 2/140 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI    K     +A+RV   MA+     + I +  ++  L    ++ EA  +
Sbjct: 431 PNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMM 490

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM--EEEKLGADARTYDALVLGA 218
              M    + PD+ AY+ ++   C  G++     +  +M  +E     D  TY+ L+   
Sbjct: 491 WTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRAL 550

Query: 219 CRAGRVEEAFVLLRRMVDDG 238
           C+   +  A  LL  M+D G
Sbjct: 551 CKQNSISHAIDLLNSMLDRG 570



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 18/190 (9%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---------NTENS 82
           +P    Y  L++    E  L+  + +L +     C  T N F + +         N++ +
Sbjct: 395 QPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGC--TPNAFTYSSLIKGFFKTGNSQKA 452

Query: 83  LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           + V  ++ +     +   P +  Y  LI  LC+  K+ EA+ +   M   G     + + 
Sbjct: 453 IRVWKEMAK-----NNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYS 507

Query: 143 PILSVLTRGKRMEEAWGLMEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
            ++  L     +E    L   M  +E    PD+  YN LL A C + +++    +L  M 
Sbjct: 508 SMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSML 567

Query: 201 EEKLGADART 210
           +     D  T
Sbjct: 568 DRGCNPDLIT 577


>gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630
 gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 574

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 73  FNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           FN + N  +    + D  + L ++ + G  P  S Y+TLI       K + +  ++D+M 
Sbjct: 118 FNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLML 177

Query: 131 EGG---FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           E G    G +  TF+ ++    + K++EEAW +++ M+E  V PD   YN + T Y  KG
Sbjct: 178 EEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKG 237

Query: 188 -NLTATSGVLKKM-EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             + A S V++KM  +EK   + RT   +V G CR GRV +    +RRM
Sbjct: 238 ETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRM 286



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 6/153 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y TL+  +   K+      +V  + + G  L +I F+ +++  +    ME+A   
Sbjct: 78  PSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDAVQA 137

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE---KLGADARTYDALVLG 217
           +  MKE+ ++P  + YN L+  Y   G    +S +L  M EE    +G + RT++ LV  
Sbjct: 138 LLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQA 197

Query: 218 ACRAGRVEEAFVLLRRMVDDG---QSVLYSTYA 247
            C+  +VEEA+ ++++M + G    +V Y+T A
Sbjct: 198 WCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIA 230



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 10/221 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNK------RARDCCFNTANTFNFITNTENSLSVL 86
           P    ++ LV A   ++ +E    ++ K      R     +NT  T  ++   E ++   
Sbjct: 186 PNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATC-YVQKGE-TVRAE 243

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           S++   +   +K  P       ++G  C+  ++ + LR V  M E     + + F+ +++
Sbjct: 244 SEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLIN 303

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                   +    ++ +MKE  V  D+  Y+ ++ A+   G +   + V K+M +  +  
Sbjct: 304 GFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKP 363

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS--VLYST 245
           DA  Y  L  G  RA   ++A  LL  ++ + +   V+++T
Sbjct: 364 DAHAYSILAKGYVRAKEPKKAEELLETLIVESRPNVVIFTT 404



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA  V   +AE G   S I++  +L+ +T  K+      ++  +++     D   +N ++
Sbjct: 63  EAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVI 122

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            A+   GN+      L KM+E  L     TY+ L+ G   AG+ E +  LL  M+++G
Sbjct: 123 NAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEG 180



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +++VL    R  EA  + + + E    P L +Y  LL A   +    + S ++ ++E+  
Sbjct: 51  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM---GALLRLGYYA 260
              D+  ++A++     +G +E+A   L +M + G +   STY  ++   G   +    +
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSS 170

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           + +  ++  G  D+  +   F  L       ++  EA  ++K+M +
Sbjct: 171 ELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEE 216


>gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana]
 gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana]
          Length = 574

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 73  FNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           FN + N  +    + D  + L ++ + G  P  S Y+TLI       K + +  ++D+M 
Sbjct: 118 FNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLML 177

Query: 131 EGG---FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           E G    G +  TF+ ++    + K++EEAW +++ M+E  V PD   YN + T Y  KG
Sbjct: 178 EEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKG 237

Query: 188 -NLTATSGVLKKM-EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             + A S V++KM  +EK   + RT   +V G CR GRV +    +RRM
Sbjct: 238 ETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRM 286



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 6/153 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y TL+  +   K+      +V  + + G  L +I F+ +++  +    ME+A   
Sbjct: 78  PSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDAVQA 137

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE---KLGADARTYDALVLG 217
           +  MKE+ ++P  + YN L+  Y   G    +S +L  M EE    +G + RT++ LV  
Sbjct: 138 LLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQA 197

Query: 218 ACRAGRVEEAFVLLRRMVDDG---QSVLYSTYA 247
            C+  +VEEA+ ++++M + G    +V Y+T A
Sbjct: 198 WCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIA 230



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 10/221 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNK------RARDCCFNTANTFNFITNTENSLSVL 86
           P    ++ LV A   ++ +E    ++ K      R     +NT  T  ++   E ++   
Sbjct: 186 PNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATC-YVQKGE-TVRAE 243

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           S++   +   +K  P       ++G  C+  ++ + LR V  M E     + + F+ +++
Sbjct: 244 SEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLIN 303

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                   +    ++ +MKE  V  D+  Y+ ++ A+   G +   + V K+M +  +  
Sbjct: 304 GFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKP 363

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS--VLYST 245
           DA  Y  L  G  RA   ++A  LL  ++ + +   V+++T
Sbjct: 364 DAHAYSILAKGYVRAKGPKKAEELLETLIVESRPNVVIFTT 404



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA  V   +AE G   S I++  +L+ +T  K+      ++  +++     D   +N ++
Sbjct: 63  EAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVI 122

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            A+   GN+      L KM+E  L     TY+ L+ G   AG+ E +  LL  M+++G
Sbjct: 123 NAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEG 180



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +++VL    R  EA  + + + E    P L +Y  LL A   +    + S ++ ++E+  
Sbjct: 51  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM---GALLRLGYYA 260
              D+  ++A++     +G +E+A   L +M + G +   STY  ++   G   +    +
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSS 170

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           + +  ++  G  D+  +   F  L       ++  EA  ++K+M +
Sbjct: 171 ELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEE 216


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 2/236 (0%)

Query: 32   EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
            +P   ++  L++    E +L   + L  +  R        T+N + N       L D   
Sbjct: 787  DPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKH 846

Query: 92   TL-ARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                 + KG FP    Y+TLI   CK K++++ +++   M   G    A T++ ++    
Sbjct: 847  MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYC 906

Query: 150  RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
            +  ++  A  +   M +  V PD+  YN LL   C  G +     +++ +++ ++  D  
Sbjct: 907  QAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDII 966

Query: 210  TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            TY+ ++ G CR  +V+EA+ L R +   G  +    Y  ++  L R G   +A K 
Sbjct: 967  TYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKL 1022



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 70/131 (53%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           ++  LI   C+  +   AL ++  M + GF  S +T   +L+   +G R +EA  L++ M
Sbjct: 652 SFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSM 711

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E+ + P++  YN ++   C   +L     +   ME++ + ADA TY+ L+ G C +GR 
Sbjct: 712 AELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRW 771

Query: 225 EEAFVLLRRMV 235
            +A  LLR MV
Sbjct: 772 TDAARLLRDMV 782



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 3/235 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   +  L+ A  + R  ETV Y   +       +   +F  + +     S LS     
Sbjct: 63  PSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALSI 122

Query: 93  LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++ K G+ P    + +L+   C   +I +A  +V  M + G+  + + ++ ++  L +
Sbjct: 123 LGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCK 182

Query: 151 GKRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              +  A  L+ E+ K+ R++ DL  YN LLT  C+ G     + +L+ M + ++  D  
Sbjct: 183 NGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVF 242

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           T+ AL+    + G ++EA  L ++M+         TY  ++  L   G    A K
Sbjct: 243 TFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKK 297



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 70/138 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LCK + ++ AL +   M + G    A+T++ ++S L    R  +A  L
Sbjct: 718 PNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARL 777

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M + ++ P++  +  L+  +  +GNL     + K+M    +  +  TY++L+ G C 
Sbjct: 778 LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCI 837

Query: 221 AGRVEEAFVLLRRMVDDG 238
            GR+ +A  +   MV  G
Sbjct: 838 QGRLGDAKHMFDLMVSKG 855



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 116/282 (41%), Gaps = 2/282 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ ++N     RDL     +     +      A T+N + +   +    +D  R
Sbjct: 717 EPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAAR 776

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  + K    P    +  LI    K   + EA  +   M       + +T++ +++   
Sbjct: 777 LLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFC 836

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              R+ +A  + ++M      PD+  YN L+T +C    +     +  +M  + L  DA 
Sbjct: 837 IQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAF 896

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ L+ G C+AG++  A  +  RMVD G      TY  ++  L   G   +A+  V   
Sbjct: 897 TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDL 956

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
               + +D   +  +   +   ++  EA  + + + ++ +K+
Sbjct: 957 QKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKL 998



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 2/209 (0%)

Query: 32   EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-FITNTENSLSVLSDLC 90
             P    Y+ L+N    +  L   +++ +      CF    T+N  IT    S  V   + 
Sbjct: 822  HPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMK 881

Query: 91   RTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                   +G    +  Y+TLI   C+  K++ A +V + M + G     +T++ +L  L 
Sbjct: 882  LFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLC 941

Query: 150  RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               ++E+A  ++E +++ ++  D+  YN ++   C    +     + + +  + +  DA 
Sbjct: 942  NNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAI 1001

Query: 210  TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             Y  ++ G CR G   EA  L  RM +DG
Sbjct: 1002 AYITMISGLCRNGLRREADKLCTRMKEDG 1030



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 3/169 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TL+  LC   +  +A R++  M +        TF  ++    +   ++EA  L + M
Sbjct: 208 TYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQM 267

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  + P+   YN L+   C  G L         M  +    +  TY+ L+ G C++ RV
Sbjct: 268 LQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRV 327

Query: 225 EEAFVLLRRMVDD---GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           E+   L +RM  +   G +  Y+T  H    + +L        +++ CG
Sbjct: 328 EDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCG 376



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 9/247 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           Q+  + R  TK    PD  T   +  L++A   + +L+  + L  +  +        T+N
Sbjct: 224 QAARILRDMTKRRINPDVFT---FTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYN 280

Query: 75  FITNTENSLSVLSDLCRTLARL-DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            + N       L    +T   +  KG FP    Y+TLI   CK +++++ +++   M   
Sbjct: 281 SLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYRE 340

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G      T++ ++    +  ++  A  +   M    V+PD+  +  LL   C  G + + 
Sbjct: 341 GLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSA 400

Query: 193 SGVLKKME--EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
                 M   E+ LG  A  Y+ ++ G C+A +VEEA+ L  R+  +G      TY  ++
Sbjct: 401 MVKFNDMRSGEKYLGIVA--YNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMI 458

Query: 251 GALLRLG 257
             L + G
Sbjct: 459 LGLCKNG 465



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 5/188 (2%)

Query: 27   GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
            G FPD  T   Y+ L+      + +E    L  +         A T+N + +       L
Sbjct: 855  GCFPDVVT---YNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKL 911

Query: 87   SDLCRTLARL-DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +   +   R+ D G P     Y+ L+  LC   KI++AL +V+ + +    +  IT++ I
Sbjct: 912  NVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNII 971

Query: 145  LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
            +  + R  +++EAW L   +    V  D  AY  +++  C  G       +  +M+E+  
Sbjct: 972  IQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGF 1031

Query: 205  GADARTYD 212
                R YD
Sbjct: 1032 MPSERIYD 1039



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 67/138 (48%), Gaps = 1/138 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P      +L+   C+  +  EA+ +VD MAE G   + + ++ +++ L + + +  A
Sbjct: 680 GFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNA 739

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             +   M++  +  D   YN L++  C  G  T  + +L+ M + K+  +   + AL+  
Sbjct: 740 LEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDT 799

Query: 218 ACRAGRVEEAFVLLRRMV 235
             + G + EA  L + M+
Sbjct: 800 FVKEGNLLEAKNLYKEMI 817



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 81/192 (42%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K D+A  +   M +     S + F  +L+ + +  + +    L   M+ + +S DL ++ 
Sbjct: 595 KFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFT 654

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C     +    +L KM +        T  +L+ G C+  R +EA  L+  M + 
Sbjct: 655 ILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAEL 714

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G       Y  V+  L +      A++       + I  D   + +L S L    R+ +A
Sbjct: 715 GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDA 774

Query: 298 NFILKEMNKRDL 309
             +L++M KR +
Sbjct: 775 ARLLRDMVKRKI 786



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 40/213 (18%), Positives = 76/213 (35%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    +  ++  + K+ K D  + +   M   G      +F  ++    R  R   A
Sbjct: 610 RPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLA 669

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M ++   P +     LL  +C          ++  M E  L  +   Y+ ++ G
Sbjct: 670 LALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVING 729

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+   +  A  +   M   G      TY  ++  L   G +  A + +     R I  +
Sbjct: 730 LCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPN 789

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              F +L    +      EA  + KEM +R + 
Sbjct: 790 VIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVH 822


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP   ++  LI   C L  + EA R+ D M E G   + +T + I+    R   + +A  
Sbjct: 536 FPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKAND 595

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +  M    V PD   YN L+ ++  + N      ++  MEE  L  +  TY+A++ G  
Sbjct: 596 FLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFS 655

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           R GR++EA ++L +M+D G +   STY  ++  
Sbjct: 656 RHGRMQEAEMVLHKMIDKGINPDKSTYTSLING 688



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 125/317 (39%), Gaps = 43/317 (13%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +A ++ ++  +  + D+     + N+  +        +F+ I       S   +L R 
Sbjct: 327 PNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGV---FSRNGELGRA 383

Query: 93  LARLDKG-----FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           LA  +K       P    Y  LI   C+   +  AL++ + M E G  +  +T++ +L+ 
Sbjct: 384 LAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNG 443

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L RGK +++A  L + M E  V PD      L+  YC  GN+T    + + M    L  D
Sbjct: 444 LCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPD 503

Query: 208 ARTYDALVLGACRAGRVE-----------------------------------EAFVLLR 232
             TY+ L+ G C+ G +E                                   EAF L  
Sbjct: 504 VVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWD 563

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            M + G      T   ++   LR G  ++A  F+       +  D   + +L +  +  E
Sbjct: 564 EMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEE 623

Query: 293 RFNEANFILKEMNKRDL 309
            F+ A F++  M +R L
Sbjct: 624 NFDRAFFLINNMEERGL 640



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 9/241 (3%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V   F KSG   +  T    + +VNA   +  L+ V   L++      +    T+N + N
Sbjct: 211 VYEDFVKSGNIVNVYT---LNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVN 267

Query: 79  TENSLSVLSD---LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
                 ++S+   L   +A   KG  P    Y+ LI  LCK    + A RV+D M   G 
Sbjct: 268 AYCRRGLVSEAFGLVDCMA--GKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGL 325

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
             +A TF+P+L    R + + EA  +   M +  V PDL +++ ++  +   G L     
Sbjct: 326 CPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALA 385

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
             +KM+   L  D   Y  L+ G CR   V  A  +   MV+ G  +   TY  ++  L 
Sbjct: 386 YFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLC 445

Query: 255 R 255
           R
Sbjct: 446 R 446



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 89/207 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+   CK+ ++++A  +   M       S I+F  +++       + EA+ L
Sbjct: 502 PDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRL 561

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + MKE  + P L   N ++  Y   GNL+  +  L  M  E +  D  TY+ L+    +
Sbjct: 562 WDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVK 621

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
               + AF L+  M + G      TY  ++G   R G   +A   +     + I  D   
Sbjct: 622 EENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKST 681

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL +  +  +   EA  +  EM +R
Sbjct: 682 YTSLINGYVSKDNMKEAFRVHDEMLQR 708



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 83/178 (46%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + ++  LCK  K+D     +  M E G     +T++ +++   R   + EA+GL++ M  
Sbjct: 228 NIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAG 287

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + P L  YN L+   C +G+      VL +M    L  +A T++ +++ +CR   V E
Sbjct: 288 KGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWE 347

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           A  +   M+  G      +++ ++G   R G   +A+ +     G  +  DT ++  L
Sbjct: 348 AERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTIL 405



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +D LI    + +K+ E      ++ + GF +S    + +L  + +   ++ AW + E  
Sbjct: 156 VFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDF 215

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +     ++   N ++ A C  G L      L +MEE+ + AD  TY+ LV   CR G V
Sbjct: 216 VKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLV 275

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            EAF L+  M   G      TY  ++  L + G Y +A
Sbjct: 276 SEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERA 313



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 70/135 (51%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           +A + L+G + K+  +D A +V +   + G  ++  T + +++ L +  +++     +  
Sbjct: 190 NACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSE 249

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+E  V  DL  YN L+ AYC +G ++   G++  M  + L     TY+AL+ G C+ G 
Sbjct: 250 MEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGS 309

Query: 224 VEEAFVLLRRMVDDG 238
            E A  +L  M+  G
Sbjct: 310 YERAKRVLDEMLGVG 324



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 94/209 (44%), Gaps = 2/209 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L++      ++E  + L         F +  +F+ + N   SL ++S+  R
Sbjct: 501 KPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFR 560

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               + +KG  P     +T+I    +   + +A   ++ M   G     IT++ +++   
Sbjct: 561 LWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFV 620

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + +  + A+ L+  M+E  + P+L  YN +L  +   G +     VL KM ++ +  D  
Sbjct: 621 KEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKS 680

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY +L+ G      ++EAF +   M+  G
Sbjct: 681 TYTSLINGYVSKDNMKEAFRVHDEMLQRG 709


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+++A  + D M   G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     +  +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +ME+A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L   M   G      TY  ++    + G+   A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 70/157 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +++A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL+ G C+
Sbjct: 299 TDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQ 358

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 1/168 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M    L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 20/216 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           + A+G + D+ T   L+N   ++     AN           + N     +++   C+   
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKN-G 255

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  + D M+  G     IT+ 
Sbjct: 256 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  +  TY  ++   C+ G V     LL+ M  DG
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   +I  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++E+A  L   M+++G
Sbjct: 210 SVLINGLCKESKMEDANELFDEMLNNG 236


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 97/208 (46%), Gaps = 13/208 (6%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLC 114
           FN         N  N  +++  LC+ L R+D               P    + +L+  LC
Sbjct: 402 FNKMRQQGLSPNVVNYATLIDALCK-LGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLC 460

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
            + K ++A  +   M   G   + + F+ I+  L    R+ +A  L+++M+ +   PD+ 
Sbjct: 461 TIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDII 520

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +YN L+  +C  G     S +L  M    L  +  TY+ L+ G CR GR+++A+ + + M
Sbjct: 521 SYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEM 580

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + +G + +  TY  ++  L +   +++A
Sbjct: 581 LSNGITPVVVTYNTILHGLFKTRRFSEA 608



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 122/277 (44%), Gaps = 26/277 (9%)

Query: 52  ETVRYLLNKRARDCCFNTA-NTFNFITNTENSLSVLSDLCRTLARLDKGFPR-----KSA 105
           E V    N+  RDCC   A + F +        S+L      + RL+ GF       K+ 
Sbjct: 73  ELVVSCFNRMIRDCCSKVAPDVFTY--------SILVGCFCRMGRLEHGFAAFGLILKTG 124

Query: 106 YDT--------LIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +          L+  LC  K++ EA+ V+   M+E G   + ++++ +L       R EE
Sbjct: 125 WRVNDVVVVNRLLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEE 184

Query: 157 AWGLMEVMKEIRV---SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           A  L+ +M + +V    P+L +YN ++  +  +G +     +   M ++ +  +  TY  
Sbjct: 185 ALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTI 244

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++ G C+A  V+ A  + ++M+D G      TY  ++   L +G + + V+ +       
Sbjct: 245 VIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHG 304

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           ++ D   +G L   L    +  EA  +   M ++ +K
Sbjct: 305 LEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIK 341



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 83/181 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++T++  LC   ++ +A R++D+M   G     I+++ ++       + +EA  L
Sbjct: 482 PNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKL 541

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M  + + P+   YN LL  YC  G +     V ++M    +     TY+ ++ G  +
Sbjct: 542 LDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFK 601

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R  EA  L   M+  G+     TY  ++  L +     +A+K       +D+++D   
Sbjct: 602 TRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIIT 661

Query: 281 F 281
           F
Sbjct: 662 F 662



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 87/209 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T+I       ++D+A  +   M + G   + +T+  ++  L + + ++ A G+
Sbjct: 202 PNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGV 261

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  V P++  Y  L+  Y   G       +LK+M    L  D  TY  L+   C+
Sbjct: 262 FQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCK 321

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+  EA  L   M+  G     S Y  ++      G  ++   F+ +  G  I  +  +
Sbjct: 322 KGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYI 381

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F  +           EA  I  +M ++ L
Sbjct: 382 FNIVFCAFAKKAMIGEAMDIFNKMRQQGL 410



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 85/206 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI   C + K DEA +++DIM   G   +  T++ +L    R  R+++A+ +
Sbjct: 517 PDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSV 576

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    ++P +  YN +L         +    +   M          TY+ ++ G  +
Sbjct: 577 FQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSK 636

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V+EA  + + +      V   T+  ++GALL+ G    A+          +  D   
Sbjct: 637 NNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTT 696

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  +   LI      E + +  EM K
Sbjct: 697 YRLIAENLIEEGSLEEFDGMFSEMEK 722



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 3/211 (1%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG  P    Y  LI     + +  E +R++  M+  G      T+  +L  L +  + 
Sbjct: 266 IDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKC 325

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L + M    + PD++ Y  +L  Y  KG L+     L  M    +  +   ++ +
Sbjct: 326 TEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIV 385

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA-VKFVMVCGGRD 273
                +   + EA  +  +M   G S     YA ++ AL +LG    A +KF  +     
Sbjct: 386 FCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMI-NEG 444

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +  +  +F SL   L  ++++ +A  +  EM
Sbjct: 445 VAPNIVVFTSLVYGLCTIDKWEKAGELFFEM 475



 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 65/166 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y  ++        + E    +D+M   G   +   F+ +     +   + EA  +
Sbjct: 342 PDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDI 401

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M++  +SP++  Y  L+ A C  G +        +M  E +  +   + +LV G C 
Sbjct: 402 FNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCT 461

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             + E+A  L   MV+ G       +  +M  L   G   +A + +
Sbjct: 462 IDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLI 507



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 71/158 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++  L K   +DEAL++   +      +  ITF+ ++  L +  R E+A  L   + 
Sbjct: 627 YNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATIS 686

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+T Y  +      +G+L    G+  +ME+     ++   + LV      G + 
Sbjct: 687 ANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDIS 746

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            A   L ++ +   S+  ST + ++    R  + A+++
Sbjct: 747 RAGAYLSKIDEKNFSLEASTTSMLISLFSREEHQAKSL 784


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 111/213 (52%), Gaps = 3/213 (1%)

Query: 97  DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG FP ++ ++ L+   C+L  + EA  V+++M++      A T++ ++S   +  R+ 
Sbjct: 260 NKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIA 319

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK-GNLTATSGVLKKMEEEKLGADARTYDAL 214
           EA  L E M+ +++SPD+  YN L+   CF+ G+      ++++ME   +  ++ TY+ +
Sbjct: 320 EAMRLREEMENLKLSPDVVTYNTLING-CFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVM 378

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           V    + G+++E    +R+M + G      TY  ++    ++G   +A + +   G + +
Sbjct: 379 VKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGL 438

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           K+D     ++   L    + +EA+ +L    +R
Sbjct: 439 KMDDVTLNTMLRALCRERKLDEAHDLLCSARRR 471



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 127/282 (45%), Gaps = 6/282 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P S  Y+ +V     +  ++ V   + K     C     T+N + +    +  + +  R
Sbjct: 369 KPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFR 428

Query: 92  TLARLD-KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            +  +  KG        +T++  LC+ +K+DEA  ++      G+ +  +++  ++    
Sbjct: 429 LMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYF 488

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + ++  +A  L + MKE  + P +  YN ++   C  G        L ++ E  L  D  
Sbjct: 489 KHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEI 548

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VM 267
           TY+ ++ G C+ G+VE+AF    +MV+        T   ++  L + G   +A+K     
Sbjct: 549 TYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTW 608

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  G+D+  D   + ++   L   +RF EA  +L+EM ++ L
Sbjct: 609 ISKGKDV--DAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKL 648



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+++I  LC++ K ++A+  +D + E G     IT++ I+    +  ++E+A+ 
Sbjct: 509 IPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQ 568

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M E    PD+   N LL   C +G L     +      +    DA +Y+ ++L  C
Sbjct: 569 FHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLC 628

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  R  EAF LL  M +        TY  ++G L   G    A +F+
Sbjct: 629 KEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFI 675



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 73/140 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+T+I   C+  ++++A +  + M E  F    +T + +L  L +   +E+A  L
Sbjct: 545 PDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKL 604

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                      D  +YN ++ + C +        +L++MEE+KLG D  TY+A++ G   
Sbjct: 605 FNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTD 664

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
           AGR+++A   + ++ + G+S
Sbjct: 665 AGRMKDAEEFISKIAEKGKS 684



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 3/205 (1%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR---GKRMEEAWG 159
           K   D  IG      +  +A ++ + M   G   + +T + +L+ L R      +  +  
Sbjct: 124 KPLLDISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKA 183

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +     +I V  +  ++N L+   C +        VL KM +     D  TY+ ++ G C
Sbjct: 184 VFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLC 243

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GR+ EA  LL  M + G     +T+  ++    RLG+  +A   + +     +  D  
Sbjct: 244 KKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAW 303

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            +  + S      R  EA  + +EM
Sbjct: 304 TYNVMISGFCKQGRIAEAMRLREEM 328


>gi|334187948|ref|NP_001190400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332006093|gb|AED93476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 73  FNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           FN + N  +    + D  + L ++ + G  P  S Y+TLI       K + +  ++D+M 
Sbjct: 118 FNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLML 177

Query: 131 EGG---FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           E G    G +  TF+ ++    + K++EEAW +++ M+E  V PD   YN + T Y  KG
Sbjct: 178 EEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKG 237

Query: 188 -NLTATSGVLKKM-EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             + A S V++KM  +EK   + RT   +V G CR GRV +    +RRM
Sbjct: 238 ETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRM 286



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 6/153 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y TL+  +   K+      +V  + + G  L +I F+ +++  +    ME+A   
Sbjct: 78  PSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDAVQA 137

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE---KLGADARTYDALVLG 217
           +  MKE+ ++P  + YN L+  Y   G    +S +L  M EE    +G + RT++ LV  
Sbjct: 138 LLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQA 197

Query: 218 ACRAGRVEEAFVLLRRMVDDG---QSVLYSTYA 247
            C+  +VEEA+ ++++M + G    +V Y+T A
Sbjct: 198 WCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIA 230



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 94/194 (48%), Gaps = 15/194 (7%)

Query: 35  SAYYDDLVNAAGHERDLE-TVRYLLNKRARDCCFN-TANTFNF------ITNTENSLSVL 86
           S +++ ++NA     ++E  V+ LL  + ++   N T +T+N       I       S L
Sbjct: 115 SIFFNAVINAFSESGNMEDAVQALL--KMKELGLNPTTSTYNTLIKGYGIAGKPERSSEL 172

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
            DL      +D G P    ++ L+   CK KK++EA  VV  M E G     +T++ I +
Sbjct: 173 LDLMLEEGNVDVG-PNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIAT 231

Query: 147 V-LTRGKRMEEAWGLME--VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
             + +G+ +     ++E  VMKE +  P+      ++  YC +G +      +++M+E +
Sbjct: 232 CYVQKGETVRAESEVVEKMVMKE-KAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMR 290

Query: 204 LGADARTYDALVLG 217
           + A+   +++L+ G
Sbjct: 291 VEANLVVFNSLING 304



 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA  V   +AE G   S I++  +L+ +T  K+      ++  +++     D   +N ++
Sbjct: 63  EAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVI 122

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            A+   GN+      L KM+E  L     TY+ L+ G   AG+ E +  LL  M+++G
Sbjct: 123 NAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEG 180



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 18/206 (8%)

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           ++V+ +M E       IT+  +++  +    ME+A  + + M +  V PD  AY+ L   
Sbjct: 340 VQVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKG 399

Query: 183 YCFKGNLTATSGVLKKMEE--EKLGADART----YDALVLGACRAGRVEEAFVLLRRMVD 236
           Y         +   KK EE  E L  ++R     +  ++ G C  G +++A  +  +M  
Sbjct: 400 Y-------VRAKEPKKAEELLETLIVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCK 452

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS--KLIGLERF 294
            G S    T+  +M   L +    +A + + +  G  +K +   F  L    ++ GL   
Sbjct: 453 FGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLT-- 510

Query: 295 NEANFILKEMNKRDLKMGFKLRDYYE 320
           +E+N  +  +  +D+++  KL   Y+
Sbjct: 511 DESNKAINALKCKDIEIA-KLEKLYQ 535



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +++VL    R  EA  + + + E    P L +Y  LL A   +    + S ++ ++E+  
Sbjct: 51  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM---GALLRLGYYA 260
              D+  ++A++     +G +E+A   L +M + G +   STY  ++   G   +    +
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSS 170

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           + +  ++  G  D+  +   F  L       ++  EA  ++K+M +
Sbjct: 171 ELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEE 216


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ LI +LCK ++ D+A R+   MA  G   + +T+  ++  L +   +E+A  L
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M++  +   +  YN L+  YC +G+L    G+L  M +E L   A +Y  L+ G CR
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G +  A  L R M + G
Sbjct: 456 NGDLSSAMELHREMAERG 473



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 4/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  ++Y  LI  LC+   +  A+ +   MAE G   +  TF  +++   + K+M+EA  L
Sbjct: 441 PTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARL 500

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  V P+   +N ++  YC  GN+     +  +M E  L  D  TY +L+ G C 
Sbjct: 501 FDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCL 560

Query: 221 AGRVEEAFVLLRRMVDDGQSVL--YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
              V +A   +  + ++  +VL  +S  A + G L R G + +          R +KLD 
Sbjct: 561 TSGVSKANEFVADL-ENSYAVLNNFSLTALLYG-LFREGRFTETYHLWDEMAVRGVKLDL 618

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             F  +    +      ++  + +EM ++ +K
Sbjct: 619 VSFTIIVYAALKQHDKEKSCVLFREMKEQGVK 650



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TL+   C++++++ ALR+   M   GF  S      ++  L + + +EEA+ L   + 
Sbjct: 271 YRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLG 330

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           ++ + P++ AYN L+   C          + K+M    L  +  TY  L+   C+ G +E
Sbjct: 331 DLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIE 390

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +A  L  +M D G  V    Y  ++    + G
Sbjct: 391 DALCLFDKMRDKGIKVTVYPYNSLINGYCKQG 422



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 104/226 (46%), Gaps = 7/226 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E +L +  D+ R       GF P ++    +I  L K + ++EA  +   + + G   + 
Sbjct: 285 EMALRITHDMIRL------GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
             ++ ++  L + +R ++A  L + M    + P+   Y  L+ A C +G +     +  K
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M ++ +      Y++L+ G C+ G ++ A  LL  MV +G +   ++Y+ ++  L R G 
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            + A++       R I  +   F +L +     ++ +EA  +  +M
Sbjct: 459 LSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKM 504



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 35/221 (15%)

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           V+ +    G  ++  T   IL  L + ++   A  L + M +  V  D   Y   + AYC
Sbjct: 150 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYC 209

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSV 241
              NL    G++ +ME E + A A  Y+ L+ G C+  RV+EA  +   MV+ G     V
Sbjct: 210 ESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEV 269

Query: 242 LYSTYAH-------------VMGALLRLGYYAQAVK-----------------FVMVCGG 271
            Y T  +             +   ++RLG+                       F + C  
Sbjct: 270 TYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKL 329

Query: 272 RDIKLDTELFG--SLGSKLIGLERFNEANFILKEMNKRDLK 310
            D+ +   +F   +L  KL   ERF++A+ + KEM  R L+
Sbjct: 330 GDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLE 370



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 106/256 (41%), Gaps = 24/256 (9%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           +S ++ R   + G  PD+    +Y  +++A   E   E +   LN      C++      
Sbjct: 636 KSCVLFREMKEQGVKPDD---IFYTCMIDALSKE---ENMIQALN------CWDQMVIDG 683

Query: 75  FITNTENSLSVLSDLCRT---------LARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL 123
           +  NT     ++++LC++            +  G   P K  Y+  +        +++A 
Sbjct: 684 YSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAK 743

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +   M +G    S ++F+ ++  L +  +++EA  LM  + E   SPD  +Y+ ++   
Sbjct: 744 DLHSAMLQGHLA-SIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHEL 802

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C  G++     +  +M  + L  D   Y+  +      G  ++A  +   M+  G    +
Sbjct: 803 CKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNW 862

Query: 244 STYAHVMGALLRLGYY 259
            TY  ++  +  + +Y
Sbjct: 863 DTYRALLSGISLMLHY 878



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 18/198 (9%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           YD +V   G + D  T R L++        + AN   F+ + ENS +VL++   +L  L 
Sbjct: 536 YDQMVEM-GLKPDNYTYRSLISGLCLTSGVSKAN--EFVADLENSYAVLNNF--SLTALL 590

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
            G  R+              +  E   + D MA  G  L  ++F  I+    +    E++
Sbjct: 591 YGLFREG-------------RFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKS 637

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L   MKE  V PD   Y  ++ A   + N+        +M  +    +  T+  L+  
Sbjct: 638 CVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINN 697

Query: 218 ACRAGRVEEAFVLLRRMV 235
            C++G +  A +L + M+
Sbjct: 698 LCKSGYLGSAELLCKEML 715



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 76/179 (42%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+  LCK  ++ EA+ V ++M   G     +T+  ++    R + +E A  +   M 
Sbjct: 236 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMI 295

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            +   P     ++++     K  +     +  K+ +  +  +   Y+AL+   C+  R +
Sbjct: 296 RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFD 355

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +A  L + M   G      TYA ++ AL + G    A+        + IK+    + SL
Sbjct: 356 DADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSL 414



 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 67/162 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LC    + +A   V  +      L+  +   +L  L R  R  E + L
Sbjct: 546 PDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHL 605

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    V  DL ++  ++ A   + +   +  + ++M+E+ +  D   Y  ++    +
Sbjct: 606 WDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSK 665

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              + +A     +MV DG S    T+  ++  L + GY   A
Sbjct: 666 EENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSA 707


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 99/204 (48%), Gaps = 1/204 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC  +++ +A+ ++ +M + G     I+++ ++S L + KR+EE  GL
Sbjct: 230 PDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGL 289

Query: 161 MEVMK-EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ M+ +  + PD   YN L+      G+       L++ E ++   D   Y A+V   C
Sbjct: 290 LQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFC 349

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             GR+ EA  ++  M+  G      TY+ V+    R+G   QA K +      D K +T 
Sbjct: 350 LNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTV 409

Query: 280 LFGSLGSKLIGLERFNEANFILKE 303
              +L + L  + + +EA  +L +
Sbjct: 410 THTALLNGLCKVGKTSEAWELLNK 433



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 1/174 (0%)

Query: 95  RLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           R D G FP +  Y+ LI  L K    DEAL  +       F +  + +  I+       R
Sbjct: 294 RNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGR 353

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M EA  ++  M      PD+  Y+ ++  +C  G L     ++K M +     +  T+ A
Sbjct: 354 MAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTA 413

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           L+ G C+ G+  EA+ LL +  ++  +    TY+ VM    R G   ++   V+
Sbjct: 414 LLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVV 467



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 7/191 (3%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+  A+RV+ +M + G        +  ++VL    R+++A    E M+ + V PD+  YN
Sbjct: 177 KLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYN 236

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+   C    +     ++  M +     D  +Y  ++   C+  RVEE   LL+RM +D
Sbjct: 237 CLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRND 296

Query: 238 G----QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
                  V Y+   H    L + G+  +A++F+    G+  ++D   + ++        R
Sbjct: 297 AGLFPDQVTYNVLIH---GLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGR 353

Query: 294 FNEANFILKEM 304
             EA  I+ EM
Sbjct: 354 MAEAKEIVGEM 364



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 122/290 (42%), Gaps = 8/290 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  +  L+N             LLNK   +    +  T++ + +       L + C 
Sbjct: 405 KPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCD 464

Query: 92  TLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            + + L KGF P     + LI  LCK +K  EA   ++     G  ++ + F  ++   +
Sbjct: 465 VVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFS 524

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R   +E A  LM+ M      PD+  Y  ++ A   KG L   +G+++KM    +     
Sbjct: 525 RQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPV 584

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG----YYAQAVKF 265
           TY  ++   C  G +E+   LL +M+   +  + S Y  V+  L   G     Y+   K 
Sbjct: 585 TYRTVIHRYCEKGNLEDLLNLLEKML--ARQEMKSAYNQVVEKLCAFGKLNEAYSLLYKI 642

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
           +     RD +    L  S  ++ +GL+ +N A  + +     D+K+  K+
Sbjct: 643 LRTASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDVKLCQKV 692



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 114/271 (42%), Gaps = 22/271 (8%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFITN----- 78
           ++G  PD+ +   Y  +++    E+ +E VR LL +   D   F    T+N + +     
Sbjct: 260 QNGCPPDKIS---YYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKH 316

Query: 79  --TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
              + +L  L +      R+D+       Y  ++   C   ++ EA  +V  M   G   
Sbjct: 317 GHADEALEFLRESEGKRFRVDE-----VGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQP 371

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             +T+  ++    R   +++A  +M+ M +    P+   +  LL   C  G  +    +L
Sbjct: 372 DVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELL 431

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV---MGAL 253
            K EEE       TY  ++ G  R G+++E+  ++ +M+  G    + T   +   + AL
Sbjct: 432 NKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKG---FFPTTVEINLLIHAL 488

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +    A+A  F+  C  +   ++   F ++
Sbjct: 489 CKDRKPAEAKDFMEQCQSKGCTINVVNFTTV 519



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 66/150 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +D ++  L   +  D A RVV +M   G       F  ++   +R  ++  A  ++ +M+
Sbjct: 130 FDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQ 189

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +   +PD++  N  +      G +       ++M    +  D  TY+ L+ G C A RV 
Sbjct: 190 KDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVV 249

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +A  ++  M+ +G      +Y  VM  L +
Sbjct: 250 DAMEMIGVMLQNGCPPDKISYYTVMSFLCK 279



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 111/257 (43%), Gaps = 17/257 (6%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNA---AGH-ERDLETVRYLLNKRAR-DCCFNTANT 72
           L+ R    +G FPD+ T   Y+ L++     GH +  LE +R    KR R D    +A  
Sbjct: 289 LLQRMRNDAGLFPDQVT---YNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIV 345

Query: 73  FNFITN--TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
            +F  N     +  ++ ++      + KG  P    Y T++   C++ ++D+A +++  M
Sbjct: 346 HSFCLNGRMAEAKEIVGEM------ISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHM 399

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            +     + +T   +L+ L +  +  EAW L+   +E   +P    Y+ ++  +  +G L
Sbjct: 400 YKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKL 459

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
             +  V+ +M ++         + L+   C+  +  EA   + +    G ++    +  V
Sbjct: 460 KESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTV 519

Query: 250 MGALLRLGYYAQAVKFV 266
           +    R G    A+  +
Sbjct: 520 IHGFSRQGDLESALSLM 536


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 8/209 (3%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+ L   LCKL + DEA  +++ M E G   + +TF   + +  +   + EA  L   M
Sbjct: 429 TYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDM 488

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++    P++  YN L+ AYC K  +     +  +M  + L  D  TY +L+ G C  GRV
Sbjct: 489 EKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRV 548

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF---VMVCG-GRDIKLDTEL 280
           +EA  L   M   G +   +TY  ++  L + G   +A K    +M  G   D ++ T L
Sbjct: 549 DEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSL 608

Query: 281 FGSLGSKL----IGLERFNEANFILKEMN 305
            GS    L    + +++ ++++ +L+  N
Sbjct: 609 VGSFHKPLTHAGLDIQKASDSDSVLRREN 637



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 8/214 (3%)

Query: 101 PRKSAYDTL----IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           P    Y+TL    +GR  + K +DE L+   +M +     S  T+  ++   +    +EE
Sbjct: 250 PNVFTYNTLLNAYVGRKDR-KGVDEILK---LMEKEQVVFSVATYSILIQWYSSSGDIEE 305

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  + E M+E  +  D+  Y+ +++     GN+     +  +M +  +  +A TY AL+ 
Sbjct: 306 AEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIG 365

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+AG++E A +LL  M   G  +    +   M    R G   +A++   +   + I  
Sbjct: 366 GVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINA 425

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           D   +  L + L  L R++EA  IL  M ++ +K
Sbjct: 426 DVFTYNILANGLCKLHRYDEAKCILNSMVEKGVK 459



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 96/201 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++T +   C+  K+DEALR+  IM + G      T++ + + L +  R +EA  ++  M 
Sbjct: 395 FNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMV 454

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  V P++  +   +  YC +GNL     + + ME++    +  TY+ L+   C+  +V+
Sbjct: 455 EKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVK 514

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  +   M++ G      TY+ ++     +G   +A+K       + I  +   + S+ 
Sbjct: 515 QAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMI 574

Query: 286 SKLIGLERFNEANFILKEMNK 306
           S L    R +EA  +  EM K
Sbjct: 575 SGLSKEGRADEAFKLYDEMMK 595



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 4/199 (2%)

Query: 118 KIDEALRVVDIMAEGG-FGLSAITFHPILSVLTRGKRMEEAWGLMEVM--KEIRVSPDLT 174
           ++D  +R    M E   F +   +   ++ VL R   +E+A  LM+ M  K I V P++ 
Sbjct: 195 EVDFCVRFFHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGI-VKPNVF 253

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            YN LL AY  + +      +LK ME+E++     TY  L+     +G +EEA  +   M
Sbjct: 254 TYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEM 313

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
            +    +    Y+ ++    RLG   +A         RDI  +   +G+L   +    + 
Sbjct: 314 REKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQM 373

Query: 295 NEANFILKEMNKRDLKMGF 313
             A  +L EM  + + +  
Sbjct: 374 EAAEILLLEMQSKGVDLNL 392



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 10/210 (4%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y ++I    +L  +  A  + D M++     +A T+  ++  + +  +ME A  L+  M
Sbjct: 324 VYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEM 383

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +   V  +L  +N  +  YC +G +     +   ME++ + AD  TY+ L  G C+  R 
Sbjct: 384 QSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRY 443

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL---- 280
           +EA  +L  MV+ G      T+   +    + G  A+A +       RD++   E+    
Sbjct: 444 DEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLF-----RDMEKKGEVPNII 498

Query: 281 -FGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + +L       E+  +A+ I  EM  + L
Sbjct: 499 TYNTLIDAYCKKEKVKQAHKIKSEMINKGL 528



 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++KG  P    Y +LI   C + ++DEAL++ + M   G   +  T+  ++S L++  R 
Sbjct: 524 INKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRA 583

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           +EA+ L + M +I + PD   +  L+ ++
Sbjct: 584 DEAFKLYDEMMKIGLIPDDRVFTSLVGSF 612


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 95/212 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y++LI   C   K +E+ R++D M + G     +TF+ ++  L +  ++ EA  
Sbjct: 247 IPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKK 306

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+ VM E  + PDL  YN L+  +C  G+L +   +   M  +    D  +Y+ L+ G  
Sbjct: 307 LLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYS 366

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +  +VEEA  L   M+  G+     TY  ++  +   G    A K   V     I  ++ 
Sbjct: 367 KTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSY 426

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            +G     L   +   EA  +  E+   + K+
Sbjct: 427 TYGIFLDGLCKNDCLFEAMKLFTELKSSNFKL 458



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 15/260 (5%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN------ 78
           +SG  PD  T   Y+ L+       DL + R L        C     ++N + N      
Sbjct: 313 ESGIVPDLVT---YNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTL 369

Query: 79  -TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
             E ++ + +++     R     P    YD+L+  +    K+D+A ++  +M   G   +
Sbjct: 370 KVEEAMKLYNEMLLVGKR-----PNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAEN 424

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           + T+   L  L +   + EA  L   +K      ++   N L+   C  G L     + +
Sbjct: 425 SYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFE 484

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           K+  E    +  TY  ++ G CR G+V++A VL+++M  +G +    TY  +M       
Sbjct: 485 KLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESN 544

Query: 258 YYAQAVKFVMVCGGRDIKLD 277
              + V+ +     +D+  D
Sbjct: 545 KLEEVVQLLHRMAQKDVSPD 564



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 66/138 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++  LCK+ + DEA ++ + M   G   S I+++ ++       + EE+  L
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRL 272

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  + PD+  +N L+   C +G +     +L  M E  +  D  TY++L+ G C 
Sbjct: 273 LDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCM 332

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G +  A  L   M   G
Sbjct: 333 VGDLNSARELFVSMPSKG 350



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 18/221 (8%)

Query: 82  SLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           +L++L +    + RL +GF            P    Y+TLI  LC   +I EA R+   M
Sbjct: 106 TLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM 165

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM------KEIRVSPDLTAYNYLLTAY 183
            + G     +T+  ++  L     +  A  L + M       EI   P++  YN ++   
Sbjct: 166 QKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGL 225

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C  G       + ++M+ + +     +Y++L+ G C AG+ EE+  LL  M+D G     
Sbjct: 226 CKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDM 285

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            T+  ++  L + G   +A K + V     I  D   + SL
Sbjct: 286 VTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSL 326



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 61/137 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S+++ L+  L K+K   +   + + M   G      T + +L+ L    R+ E +  
Sbjct: 67  PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAA 126

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +     SP++  YN L+   C +  ++  + +  +M++     D  TY  L+ G C 
Sbjct: 127 FAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCG 186

Query: 221 AGRVEEAFVLLRRMVDD 237
            G +  A  L + M++D
Sbjct: 187 TGNINIALKLHQEMLND 203



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 87/209 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI    K  K++EA+++ + M   G   + IT+  +L  +    ++++A  L
Sbjct: 353 PDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKL 412

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             VMK   ++ +   Y   L   C    L     +  +++      +    + L+ G C+
Sbjct: 413 FSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCK 472

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG++E A+ L  ++ ++G      TY  ++    R G   +A   +          D   
Sbjct: 473 AGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIIT 532

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + +L        +  E   +L  M ++D+
Sbjct: 533 YNTLMRGFYESNKLEEVVQLLHRMAQKDV 561



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 14/174 (8%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           +   + L+  LC + ++ E       +   G+  + +T++ ++  L    R+ EA  L  
Sbjct: 104 RCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFL 163

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR----------TYD 212
            M+++  +PD+  Y  L+   C  GN+     +  K+ +E L   +R          TY+
Sbjct: 164 RMQKLGCTPDVVTYGTLIKGLCGTGNIN----IALKLHQEMLNDISRYEINCKPNVITYN 219

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            +V G C+ GR +EA  L   M   G      +Y  ++      G + ++ + +
Sbjct: 220 IIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLL 273



 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 61/127 (48%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + LI  LCK  K++ A  + + ++  G   + +T+  ++    R  ++++A  L++ M+ 
Sbjct: 464 NCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEA 523

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
              +PD+  YN L+  +     L     +L +M ++ +  DA T   +V    +  + +E
Sbjct: 524 NGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQE 583

Query: 227 AFVLLRR 233
              LL R
Sbjct: 584 CLHLLPR 590


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 5/227 (2%)

Query: 88  DLCRTLARLDK----GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           DL  +LA L K    G+ P      +L+   C  K+I +A+ +VD M E G+    ITF 
Sbjct: 59  DLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFT 118

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++  L    +  EA  L++ M +    P+L  Y  ++   C +G++     +L KME  
Sbjct: 119 TLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 178

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           K+ AD   ++ ++   C+   V++A  L + M   G      TY+ ++  L   G ++ A
Sbjct: 179 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 238

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + +     + I  +   F +L    +   +F EA  +  +M KR +
Sbjct: 239 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 285



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 114/284 (40%), Gaps = 6/284 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  +VN      D++    LLNK            FN I ++      + D   
Sbjct: 146 QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 205

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               ++ KG  P    Y +LI  LC   +  +A +++  M E     + +TF+ ++    
Sbjct: 206 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 265

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  +  EA  L + M +  + PD+  YN L+  +C    L     + + M  +    D  
Sbjct: 266 KEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLD 325

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVM 267
           TY+ L+ G C++ RVE+   L R M   G      TY  ++  L   G    AQ V   M
Sbjct: 326 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 385

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           V  G  +  D   +  L   L    +  +A  +   M K ++K+
Sbjct: 386 VSDG--VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 427



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 35/202 (17%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK K++++   +   M+  G     +T+  ++  L      + A  
Sbjct: 321 FPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 380

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    V PD+  Y+ LL   C  G L     V   M++ ++  D   Y  ++ G C
Sbjct: 381 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 440

Query: 220 RAGRV-----------------------------------EEAFVLLRRMVDDGQSVLYS 244
           +AG+V                                   +EA+ LL++M +DG      
Sbjct: 441 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSG 500

Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
           TY  ++ A LR G  A + + +
Sbjct: 501 TYNTLIRAHLRDGDKAASAELI 522



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 80/184 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI    K  K  EA ++ D M +        T++ +++      R+++A  +
Sbjct: 252 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 311

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M      PDL  YN L+  +C    +   + + ++M    L  D  TY  L+ G   
Sbjct: 312 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 371

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  + A  + ++MV DG      TY+ ++  L   G   +A++        +IKLD  +
Sbjct: 372 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 431

Query: 281 FGSL 284
           + ++
Sbjct: 432 YTTM 435



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LC   K+++AL V D M +    L    +  ++  + +  ++++ W L
Sbjct: 392 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 451

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V P++  YN +++  C K  L     +LKKM+E+    D+ TY+ L+    R
Sbjct: 452 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLR 511

Query: 221 AGRVEEAFVLLRRM 234
            G    +  L+R M
Sbjct: 512 DGDKAASAELIREM 525



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 99/216 (45%), Gaps = 16/216 (7%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-- 78
           R  +  G   D  T   Y  L+    H+ D +  + +  +   D       T++ + +  
Sbjct: 348 REMSHRGLVGDTVT---YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 404

Query: 79  -----TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
                 E +L V   + ++  +LD        Y T+I  +CK  K+D+   +   ++  G
Sbjct: 405 CNNGKLEKALEVFDYMQKSEIKLDI-----YIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 459

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
              + +T++ ++S L   + ++EA+ L++ MKE    PD   YN L+ A+   G+  A++
Sbjct: 460 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA 519

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            ++++M   +   DA T   LV      GR++++F+
Sbjct: 520 ELIREMRSCRFVGDASTI-GLVANMLHDGRLDKSFL 554



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 2/195 (1%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME--EAWGLMEVMKEIRVSPDLTA 175
           K+D+A+ +   M +     S   F+ +LS + + K+ +   +  L+  M ++   P +  
Sbjct: 22  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVT 81

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
            + LL  YC    ++    ++ +M E     D  T+  L+ G     +  EA  L+ RMV
Sbjct: 82  LSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMV 141

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
             G      TY  V+  L + G    A   +       I+ D  +F ++   L      +
Sbjct: 142 QRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVD 201

Query: 296 EANFILKEMNKRDLK 310
           +A  + KEM  + ++
Sbjct: 202 DALNLFKEMETKGIR 216


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 4/199 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG- 159
           P    Y  LIG LC++ ++  +     ++ + G+ ++ I  + +L  L  GKR+ EA   
Sbjct: 96  PNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDV 155

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK---LGADARTYDALVL 216
           L++ M E+  +PD  +Y+ LL  +C +        +L+ M  +       +  TY  ++ 
Sbjct: 156 LLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVID 215

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+A   + A  + ++M+D+G      TY  ++   L +G + + V+ +     R +K 
Sbjct: 216 GLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKP 275

Query: 277 DTELFGSLGSKLIGLERFN 295
           D   +GSL + L  L   +
Sbjct: 276 DCYTYGSLLNYLCALSEMH 294



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 13/208 (6%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLC 114
           FN         N  N  +++  LC+ L R+D               P    +++L+  LC
Sbjct: 332 FNKMRQHGLSPNVVNYGALIDALCK-LGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLC 390

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
            + K + A  +V  M + G   +A+ F+ ++  L    R+ E   L+++M+ + V PD  
Sbjct: 391 TVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAF 450

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +Y  L++ YC  G       V   M    L     TY+ L+ G C A R+++A+ L R M
Sbjct: 451 SYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREM 510

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +  G +    TY  ++  L +   +++A
Sbjct: 511 LRKGVTPGVVTYNTILHGLFQTKRFSEA 538



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 1/187 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    ++TLI  LC + ++ E  R++D+M   G    A ++ P++S      R 
Sbjct: 406 LDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRT 465

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  + + M  I +SP    YN LL  YC    +     + ++M  + +     TY+ +
Sbjct: 466 DEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTI 525

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G  +  R  EA  L   M++ G      TY  ++  L +     +A K       + +
Sbjct: 526 LHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGL 585

Query: 275 KLDTELF 281
           +L+   F
Sbjct: 586 QLNIITF 592



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 117/290 (40%), Gaps = 25/290 (8%)

Query: 27  GAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           G  PD  + S       N    E  LE +R + N   R C        N +T T    +V
Sbjct: 164 GCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSC------PPNVVTYT----TV 213

Query: 86  LSDLCRTL----------ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           +  LC+              +D G  P    Y+ LI     + K  E +++++ M+  G 
Sbjct: 214 IDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGL 273

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
                T+  +L+ L     + E    +++M E  +SPD   +N   +AY   G +     
Sbjct: 274 KPDCYTYGSLLNYLCA---LSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMD 330

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +  KM +  L  +   Y AL+   C+ GRV++A V   +M+++G +     +  ++  L 
Sbjct: 331 IFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLC 390

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  + +A + V     + I  +   F +L   L  + R  E   ++  M
Sbjct: 391 TVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLM 440



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 63/140 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++  LCK   +DEA ++   +   G  L+ ITF  ++  L +G R E+A  L   + 
Sbjct: 557 YNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIP 616

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y  +      +G+L     +   ME+     +++  +ALV      G + 
Sbjct: 617 ANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDIS 676

Query: 226 EAFVLLRRMVDDGQSVLYST 245
            A   L ++ +   SV  ST
Sbjct: 677 RAGAYLSKLDERNFSVEAST 696



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 84/211 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+TL+   C   +ID+A  +   M   G     +T++ IL  L + KR  EA  L
Sbjct: 482 PTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKEL 541

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M       D+  YN +L   C    +     + + +  + L  +  T+  ++    +
Sbjct: 542 YLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLK 601

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR E+A  L   +  +G      TY  V   L+  G   +               ++++
Sbjct: 602 GGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQM 661

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
             +L  +L+     + A   L ++++R+  +
Sbjct: 662 LNALVRRLLHRGDISRAGAYLSKLDERNFSV 692


>gi|125575133|gb|EAZ16417.1| hypothetical protein OsJ_31886 [Oryza sativa Japonica Group]
          Length = 678

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 6/270 (2%)

Query: 2   SLLRKLPTKFLIPQSVL-VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           +LL  L  K   PQ  L V    +  G  PD  T   Y+ L++A+     L   +++L +
Sbjct: 360 TLLVDLVCKNCGPQKALEVLDELSLEGCQPDVVT---YNALISASCKAGRLNDAKFILTR 416

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKK 118
            A +       T+  + +   ++    ++C  L  +++    P  + Y+  I   CK   
Sbjct: 417 LAAEGLEPNGTTYCILLHALCNMRRWDEVCDLLEDMNQVNRDPDVTTYNIFINYFCKYGH 476

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+A+ V++ M         +T + +L+ +++   +EEA G+   ++E      L  YN 
Sbjct: 477 LDQAIDVLERMVINNCSPDIVTCNTLLNAISKKGMVEEALGIARCIRENGYKLVLITYNT 536

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+ A   K  +     +  +M  + +  D  TY +LV+G C+    +EA  LL +M+  G
Sbjct: 537 LIDALAKKAEVKKAMVLFDEMLSDGISPDDITYGSLVMGFCKKDMADEALDLLNQMLTLG 596

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
             V  +T+  V+ AL R G    A +   V
Sbjct: 597 FEVKTTTFVMVIQALCRDGKVEAAAEITKV 626



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + +L VL +L      L+   P    Y+ LI   CK  ++++A  ++  +A  G   +  
Sbjct: 373 QKALEVLDEL-----SLEGCQPDVVTYNALISASCKAGRLNDAKFILTRLAAEGLEPNGT 427

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +L  L   +R +E   L+E M ++   PD+T YN  +  +C  G+L     VL++M
Sbjct: 428 TYCILLHALCNMRRWDEVCDLLEDMNQVNRDPDVTTYNIFINYFCKYGHLDQAIDVLERM 487

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
                  D  T + L+    + G VEEA  + R + ++G  ++  TY  ++ AL +    
Sbjct: 488 VINNCSPDIVTCNTLLNAISKKGMVEEALGIARCIRENGYKLVLITYNTLIDALAKKAEV 547

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLR 316
            +A+          I  D   +GSL       +  +EA  +L +M    L +GF+++
Sbjct: 548 KKAMVLFDEMLSDGISPDDITYGSLVMGFCKKDMADEALDLLNQM----LTLGFEVK 600



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 73/161 (45%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L  G P   + + LI +LC+  ++  AL+V++ M   G   S ITF+ ++  +   +  +
Sbjct: 279 LSGGVPDTISCNMLIAQLCRGGQLSSALQVLEDMRFSGCSPSGITFNTLIRCMFNQRMYD 338

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A    +    +   P       L+   C          VL ++  E    D  TY+AL+
Sbjct: 339 RAISFWKEQLRLGWPPYEMTSTLLVDLVCKNCGPQKALEVLDELSLEGCQPDVVTYNALI 398

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
             +C+AGR+ +A  +L R+  +G     +TY  ++ AL  +
Sbjct: 399 SASCKAGRLNDAKFILTRLAAEGLEPNGTTYCILLHALCNM 439



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 8/236 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLL---NKRARDCCFNTANTFNFITNTENSLSVLSD 88
           EP    Y  L++A  + R  + V  LL   N+  RD       T+N   N       L  
Sbjct: 423 EPNGTTYCILLHALCNMRRWDEVCDLLEDMNQVNRD---PDVTTYNIFINYFCKYGHLDQ 479

Query: 89  LCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
               L R+  +   P     +TL+  + K   ++EAL +   + E G+ L  IT++ ++ 
Sbjct: 480 AIDVLERMVINNCSPDIVTCNTLLNAISKKGMVEEALGIARCIRENGYKLVLITYNTLID 539

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L +   +++A  L + M    +SPD   Y  L+  +C K        +L +M       
Sbjct: 540 ALAKKAEVKKAMVLFDEMLSDGISPDDITYGSLVMGFCKKDMADEALDLLNQMLTLGFEV 599

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              T+  ++   CR G+VE A  + + M+        S  + ++  + + G+  +A
Sbjct: 600 KTTTFVMVIQALCRDGKVEAAAEITKVMLSKNSIPGNSLCSSIVTKVAKSGWNKEA 655



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 1/170 (0%)

Query: 95  RLDKGFPRKSAYDTLIGRL-CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           +L  G+P      TL+  L CK     +AL V+D ++  G     +T++ ++S   +  R
Sbjct: 347 QLRLGWPPYEMTSTLLVDLVCKNCGPQKALEVLDELSLEGCQPDVVTYNALISASCKAGR 406

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           + +A  ++  +    + P+ T Y  LL A C          +L+ M +     D  TY+ 
Sbjct: 407 LNDAKFILTRLAAEGLEPNGTTYCILLHALCNMRRWDEVCDLLEDMNQVNRDPDVTTYNI 466

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            +   C+ G +++A  +L RMV +  S    T   ++ A+ + G   +A+
Sbjct: 467 FINYFCKYGHLDQAIDVLERMVINNCSPDIVTCNTLLNAISKKGMVEEAL 516


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 99/204 (48%), Gaps = 1/204 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC  +++ +A+ ++ +M + G     I+++ ++S L + KR+EE  GL
Sbjct: 230 PDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGL 289

Query: 161 MEVMK-EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ M+ +  + PD   YN L+      G+       L++ E ++   D   Y A+V   C
Sbjct: 290 LQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFC 349

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             GR+ EA  ++  M+  G      TY+ V+    R+G   QA K +      D K +T 
Sbjct: 350 LNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTV 409

Query: 280 LFGSLGSKLIGLERFNEANFILKE 303
              +L + L  + + +EA  +L +
Sbjct: 410 THTALLNGLCKVGKTSEAWELLNK 433



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 1/174 (0%)

Query: 95  RLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           R D G FP +  Y+ LI  L K    DEAL  +       F +  + +  I+       R
Sbjct: 294 RNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGR 353

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M EA  ++  M      PD+  Y+ ++  +C  G L     ++K M +     +  T+ A
Sbjct: 354 MAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTA 413

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           L+ G C+ G+  EA+ LL +  ++  +    TY+ VM    R G   ++   V+
Sbjct: 414 LLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVV 467



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 7/191 (3%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+  A+RV+ +M + G        +  ++VL    R+++A    E M+ + V PD+  YN
Sbjct: 177 KLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYN 236

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+   C    +     ++  M +     D  +Y  ++   C+  RVEE   LL+RM +D
Sbjct: 237 CLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRND 296

Query: 238 G----QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
                  V Y+   H    L + G+  +A++F+    G+  ++D   + ++        R
Sbjct: 297 AGLFPDQVTYNVLIH---GLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGR 353

Query: 294 FNEANFILKEM 304
             EA  I+ EM
Sbjct: 354 MAEAKEIVGEM 364



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 122/290 (42%), Gaps = 8/290 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  +  L+N             LLNK   +    +  T++ + +       L + C 
Sbjct: 405 KPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCD 464

Query: 92  TLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            + + L KGF P     + LI  LCK +K  EA   ++     G  ++ + F  ++   +
Sbjct: 465 VVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFS 524

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R   +E A  LM+ M      PD+  Y  ++ A   KG L   +G+++KM    +     
Sbjct: 525 RQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPV 584

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG----YYAQAVKF 265
           TY  ++   C  G +E+   LL +M+   +  + S Y  V+  L   G     Y+   K 
Sbjct: 585 TYRTVIHRYCEKGNLEDLLNLLEKML--ARQEMKSAYNQVVEKLCAFGKLNEAYSLLYKI 642

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
           +     RD +    L  S  ++ +GL+ +N A  + +     D+K+  K+
Sbjct: 643 LRTASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDVKLCQKV 692



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 115/271 (42%), Gaps = 22/271 (8%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFITN----- 78
           ++G  PD+   +YY  +++    E+ +E VR LL +   D   F    T+N + +     
Sbjct: 260 QNGCPPDK--ISYYT-VMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKH 316

Query: 79  --TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
              + +L  L +      R+D+       Y  ++   C   ++ EA  +V  M   G   
Sbjct: 317 GHADEALEFLRESEGKRFRVDE-----VGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQP 371

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             +T+  ++    R   +++A  +M+ M +    P+   +  LL   C  G  +    +L
Sbjct: 372 DVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELL 431

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV---MGAL 253
            K EEE       TY  ++ G  R G+++E+  ++ +M+  G    + T   +   + AL
Sbjct: 432 NKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKG---FFPTTVEINLLIHAL 488

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +    A+A  F+  C  +   ++   F ++
Sbjct: 489 CKDRKPAEAKDFMEQCQSKGCTINVVNFTTV 519



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 66/150 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +D ++  L   +  D A RVV +M   G       F  ++   +R  ++  A  ++ +M+
Sbjct: 130 FDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQ 189

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +   +PD++  N  +      G +       ++M    +  D  TY+ L+ G C A RV 
Sbjct: 190 KDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVV 249

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +A  ++  M+ +G      +Y  VM  L +
Sbjct: 250 DAMEMIGVMLQNGCPPDKISYYTVMSFLCK 279



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 111/257 (43%), Gaps = 17/257 (6%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNA---AGH-ERDLETVRYLLNKRAR-DCCFNTANT 72
           L+ R    +G FPD+ T   Y+ L++     GH +  LE +R    KR R D    +A  
Sbjct: 289 LLQRMRNDAGLFPDQVT---YNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIV 345

Query: 73  FNFITN--TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
            +F  N     +  ++ ++      + KG  P    Y T++   C++ ++D+A +++  M
Sbjct: 346 HSFCLNGRMAEAKEIVGEM------ISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHM 399

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            +     + +T   +L+ L +  +  EAW L+   +E   +P    Y+ ++  +  +G L
Sbjct: 400 YKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKL 459

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
             +  V+ +M ++         + L+   C+  +  EA   + +    G ++    +  V
Sbjct: 460 KESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTV 519

Query: 250 MGALLRLGYYAQAVKFV 266
           +    R G    A+  +
Sbjct: 520 IHGFSRQGDLESALSLM 536


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 8/210 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK+ + + A  ++ +MA      +  ++  I++ L + +++++A+ L
Sbjct: 109 PSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQL 168

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK     PD   YN L+   C K  L     +L  M E     D  T+ AL+ G C 
Sbjct: 169 FEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCT 228

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL---RLGYYAQAVKFVMVCGGRDIKLD 277
             R++EAFVL + M   G +    T+  ++  L    +L      V+    C    + L 
Sbjct: 229 TDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPAC-PEAVILY 287

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
           T +F  LG +      F+ A  +L++M +R
Sbjct: 288 TPIFRELGRR----RGFDRAARLLQKMARR 313



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +   L + +  D A R++  MA  G   + +T+      L   K    A+     M 
Sbjct: 287 YTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRML 346

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  + PD+ AYN L+  +C    L     +++ M++  L  +  TY+ LV   CR G+VE
Sbjct: 347 EQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVE 406

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
               LL  MV  G+    +T++ ++  L R+G    A  F+
Sbjct: 407 AIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQVDAAYSFL 447



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 4/204 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  L+  LC+  KID+A   +  MA         T++ ++  L + +R+  A   
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEF 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M E    PD+  YN LL   C  G +     +   ME   +     TY  L+   C+
Sbjct: 68  FETMPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 123

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             + E A+ LL+ M     S    +Y  ++  L +     QA +          K D   
Sbjct: 124 MCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVT 183

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L   L   +R +EA  +L  M
Sbjct: 184 YNTLIHGLCVKQRLHEAKDLLTVM 207



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 57/138 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y      L   K+   A R    M E G     + ++ ++    +  R++ A  +
Sbjct: 317 PNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKM 376

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  + P++  YN L+  +C KG + A   +L  M       D  T+  LV G  R
Sbjct: 377 VRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFR 436

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G+V+ A+  L   +  G
Sbjct: 437 VGQVDAAYSFLNLAMSQG 454


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 12/196 (6%)

Query: 82  SLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           S S + D  R    +DK F            P   A + LI +LCK ++  EA R+   M
Sbjct: 302 SCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGM 361

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
           A  G   + +T+  ++  L +   M++A  + + M+E  +   +  YN L+  YC   N 
Sbjct: 362 ANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNF 421

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
               G+L +M E+ L   A +Y  L+ G CR G +  A  L R M  +G S    T+  +
Sbjct: 422 HQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTL 481

Query: 250 MGALLRLGYYAQAVKF 265
           +    + G   +A + 
Sbjct: 482 ISGFCKDGNMDEAARL 497



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 88/188 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y  LI  LCK   +D+AL + D M E G  ++   ++ +++   +     +A GL
Sbjct: 368 PNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGL 427

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  ++P   +Y+ L+   C KG+L +   + ++M    +  +  T+  L+ G C+
Sbjct: 428 LNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCK 487

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G ++EA  L  +M+D        T+  ++    R+G   +A +       R +  D   
Sbjct: 488 DGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYT 547

Query: 281 FGSLGSKL 288
           + SL S L
Sbjct: 548 YRSLISVL 555



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 21/226 (9%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++KG  P  ++Y  LI  LC+   +  A+ +   MA  G   +  TF  ++S   +   M
Sbjct: 432 VEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNM 491

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  L + M +  V P+   +N ++  YC  GN+     +  +M +  L  D  TY +L
Sbjct: 492 DEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSL 551

Query: 215 V------LGACRAGRVEEAFVLLRRMVDD--GQSVLYSTYA--HVMGALLRLGYYAQAVK 264
           +      LGA +A          +  VDD     V+ ++++   +M    + G   +   
Sbjct: 552 ISVLCLTLGAMKA----------KEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYH 601

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  R +KLD   F  +    + L    + + + +EM ++ +K
Sbjct: 602 IWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVK 647



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%)

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           +L++  +A  V+ +    G  +   T   IL  L + ++   A  L + M + +   D  
Sbjct: 137 RLRRARDAADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEY 196

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            Y   + AYC   NL    G+L +ME + +   A  Y+ L+ G CR  RV EA  +   M
Sbjct: 197 VYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSM 256

Query: 235 VDDG 238
           V+ G
Sbjct: 257 VERG 260



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 99/219 (45%), Gaps = 2/219 (0%)

Query: 93  LARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L R++    + SA  Y+ L+  LC+  ++ EA+ V + M E G     +T+  ++    R
Sbjct: 218 LTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCR 277

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            + +E A  + + M  +   P + + ++++     +G++     +   + E  +  +   
Sbjct: 278 TEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFA 337

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
            +AL+   C+  R  EA  L R M + G      TYA ++ +L + G    A+       
Sbjct: 338 CNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMR 397

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + I++    + SL +     + F++A  +L EM ++ L
Sbjct: 398 EKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGL 436



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 3/162 (1%)

Query: 77  TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           +  EN +  L+   + +A  D   P    Y  LI  LCK   +  A  + + M  G F  
Sbjct: 661 SKEENIVQALNCWDKMIA--DGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLP 718

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           ++ T++  L  L     +E+A  L   + E  ++  +T +N L+  +C  G +     ++
Sbjct: 719 NSFTYNCFLDFLANEGELEKAKVLHATILEGCLANTVT-FNTLIKGFCKAGQIQGAIDLM 777

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +   E     D  +Y  ++   C+ G + +AF L   M+  G
Sbjct: 778 QNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKG 819



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 12/204 (5%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           L K+++   A  + D M +  F L    +   +      + ++ A GL+  M+   V   
Sbjct: 170 LIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGS 229

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
              YN L+   C    +     V   M E  + AD  TY  LV G CR   +E A     
Sbjct: 230 AVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMAL---- 285

Query: 233 RMVDDGQSVLY----STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG--SLGS 286
            M DD  S+ +    ++ + ++  L + G+  +A  F + C   ++ +   LF   +L  
Sbjct: 286 EMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKA--FRLACHLGELGMVPNLFACNALID 343

Query: 287 KLIGLERFNEANFILKEMNKRDLK 310
           KL    RF EA  + + M  R L+
Sbjct: 344 KLCKDRRFREAERLFRGMANRGLE 367



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 2/170 (1%)

Query: 97  DKGFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG    + + T +I    K + I +AL   D M   G   + +T+  +++ L +   + 
Sbjct: 643 EKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLS 702

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L E M   R  P+   YN  L     +G L   + VL     E   A+  T++ L+
Sbjct: 703 SAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELE-KAKVLHATILEGCLANTVTFNTLI 761

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G C+AG+++ A  L++   + G      +Y+ ++  L ++G   +A + 
Sbjct: 762 KGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQL 811



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 15/161 (9%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           F+ + EN+  VL+    T               TL+   CK  ++ E   + D M   G 
Sbjct: 567 FVDDLENNCVVLNSFSLT---------------TLMYGFCKEGRLTETYHIWDEMRARGV 611

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
            L  I+F  I+    +    E+   L   MKE  V PD   +  ++  +  + N+     
Sbjct: 612 KLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALN 671

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
              KM  +    +  TY  L+   C++G +  A +L   M+
Sbjct: 672 CWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEML 712



 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 45/102 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++TLI   CK  +I  A+ ++    E GF    I++  I++ L +   + +A+ L   M 
Sbjct: 757 FNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEML 816

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
              + PD+ AYN L+      G      G+   M   K   D
Sbjct: 817 YKGLKPDIVAYNILIRWCNIHGEFDKGLGIYSDMVNLKYADD 858



 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 106/276 (38%), Gaps = 55/276 (19%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR- 91
           P++A Y  L+     + DL +   L  + AR+    + N + F T       ++S  C+ 
Sbjct: 438 PSAASYSPLIAGLCRKGDLASAMELHREMARNGV--SGNVYTFTT-------LISGFCKD 488

Query: 92  ----TLARL-DKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
                 ARL DK       P +  ++ +I   C++  + +A ++ D M + G      T+
Sbjct: 489 GNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTY 548

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++SVL       +A   ++ ++   V  +  +   L+  +C +G LT T  +  +M  
Sbjct: 549 RSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRA 608

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLR----------------------------- 232
             +  D  ++  +V  A +    E+  VL R                             
Sbjct: 609 RGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQ 668

Query: 233 ------RMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
                 +M+ DG S    TY  ++  L + GY + A
Sbjct: 669 ALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSA 704



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 8/219 (3%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-- 78
           R   + G  PD   + ++  +++    E ++       +K   D C     T+  + N  
Sbjct: 639 REMKEKGVKPD---NVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHL 695

Query: 79  -TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
                LS    LC  +  + +  P    Y+  +  L    ++++A  +   + EG    +
Sbjct: 696 CKSGYLSSAQILCEEML-VGRFLPNSFTYNCFLDFLANEGELEKAKVLHATILEGCLA-N 753

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            +TF+ ++    +  +++ A  LM+   E    PD  +Y+ ++   C  G++     +  
Sbjct: 754 TVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWN 813

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           +M  + L  D   Y+ L+      G  ++   +   MV+
Sbjct: 814 EMLYKGLKPDIVAYNILIRWCNIHGEFDKGLGIYSDMVN 852


>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
          Length = 693

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 99/204 (48%), Gaps = 1/204 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC  +++ +A+ ++ +M + G     I+++ ++S L + KR+EE  GL
Sbjct: 197 PDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGL 256

Query: 161 MEVMK-EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ M+ +  + PD   YN L+      G+       L++ E ++   D   Y A+V   C
Sbjct: 257 LQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFC 316

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             GR+ EA  ++  M+  G      TY+ V+    R+G   QA K +      D K +T 
Sbjct: 317 LNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTV 376

Query: 280 LFGSLGSKLIGLERFNEANFILKE 303
              +L + L  + + +EA  +L +
Sbjct: 377 THTALLNGLCKVGKTSEAWELLNK 400



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 1/174 (0%)

Query: 95  RLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           R D G FP +  Y+ LI  L K    DEAL  +       F +  + +  I+       R
Sbjct: 261 RNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGR 320

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M EA  ++  M      PD+  Y+ ++  +C  G L     ++K M +     +  T+ A
Sbjct: 321 MAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTA 380

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           L+ G C+ G+  EA+ LL +  ++  +    TY+ VM    R G   ++   V+
Sbjct: 381 LLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVV 434



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 7/191 (3%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+  A+RV+ +M + G        +  ++VL    R+++A    E M+ + V PD+  YN
Sbjct: 144 KLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYN 203

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+   C    +     ++  M +     D  +Y  ++   C+  RVEE   LL+RM +D
Sbjct: 204 CLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRND 263

Query: 238 G----QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
                  V Y+   H    L + G+  +A++F+    G+  ++D   + ++        R
Sbjct: 264 AGLFPDQVTYNVLIH---GLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGR 320

Query: 294 FNEANFILKEM 304
             EA  I+ EM
Sbjct: 321 MAEAKEIVGEM 331



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 112/257 (43%), Gaps = 17/257 (6%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNA---AGH-ERDLETVRYLLNKRAR-DCCFNTANT 72
           L+ R    +G FPD+ T   Y+ L++     GH +  LE +R    KR R D    +A  
Sbjct: 256 LLQRMRNDAGLFPDQVT---YNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIV 312

Query: 73  FNFITN--TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
            +F  N     +  ++ ++      + KG  P    Y T++   C++ ++D+A +++  M
Sbjct: 313 HSFCLNGRMAEAKEIVGEM------ISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHM 366

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            +     + +T   +L+ L +  +  EAW L+   +E   +P    Y+ ++  +  +G L
Sbjct: 367 YKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKL 426

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
             +  V+ +M ++         + L+   C+ G+  EA   + +    G ++    +  V
Sbjct: 427 KESCDVVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTV 486

Query: 250 MGALLRLGYYAQAVKFV 266
           +    R G    A+  +
Sbjct: 487 IHGFSRQGDLESALSLM 503



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 121/290 (41%), Gaps = 8/290 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  +  L+N             LLNK   +    +  T++ + +       L + C 
Sbjct: 372 KPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCD 431

Query: 92  TLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            + + L KGF P     + LI  LCK  K  EA   ++     G  ++ + F  ++   +
Sbjct: 432 VVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFS 491

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R   +E A  LM+ M      PD+  Y  ++ A   KG L   +G+++KM    L     
Sbjct: 492 RQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPV 551

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG----YYAQAVKF 265
           TY  ++   C  G +E+   LL +M+   +  + S Y  V+  L   G     Y+   K 
Sbjct: 552 TYRTVIHRYCEKGNLEDLLNLLEKML--ARQEMKSAYNQVVEKLCAFGKLNEAYSLLYKI 609

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
           +     RD +    L  S  ++ +GL+ +N A  + +     D+K+  K+
Sbjct: 610 LRTASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDVKLCQKV 659



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 53/118 (44%)

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           A  F  ++   +R  ++  A  ++ +M++   +PD++  N  +      G +       +
Sbjct: 129 APEFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAE 188

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +M    +  D  TY+ L+ G C A RV +A  ++  M+ +G      +Y  VM  L +
Sbjct: 189 RMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCK 246


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 9/191 (4%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKR 153
           L +G P   +Y+ L+  LC   +  EAL ++ IMA+ G       +++  +++   +   
Sbjct: 44  LRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFK--- 100

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
                G ++ M + R+SP++  YN ++ A C    +     VL  M +  +  D  TY++
Sbjct: 101 ----EGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNS 156

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           +V G C +G+ +EA V L++M  DG      TY  +M  L + G   +A K       R 
Sbjct: 157 IVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRG 216

Query: 274 IKLDTELFGSL 284
           +K D   +G+L
Sbjct: 217 LKPDITTYGTL 227



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 6/193 (3%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D   P    Y++L+  LCK  +  EA ++ D M + G      T+  +L        +
Sbjct: 178 RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGAL 237

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E  GL+++M    + P+   ++ L+ AY  +  +     V  KM ++ L  +A TY  +
Sbjct: 238 VEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTV 297

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           +   C++GRVE+A +   +M+D+G    S++Y++  H   +L     + +A +  +    
Sbjct: 298 IDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIH---SLCIFDKWEKAEELFLEMLD 354

Query: 272 RDIKLDTELFGSL 284
           R I L T  F S+
Sbjct: 355 RGICLSTIFFNSI 367



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 118/284 (41%), Gaps = 19/284 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI-------TNTENSLSV 85
           P    Y  ++N    E DL+    +L++R          T+N I          + ++ V
Sbjct: 86  PDVVSYSTVINGFFKEGDLDK---MLDQRISP----NVVTYNSIIAALCKAQTVDKAMEV 138

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L+ + ++        P    Y++++   C   +  EA+  +  M   G     +T++ ++
Sbjct: 139 LTTMVKSGV-----MPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLM 193

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L +  R  EA  + + M +  + PD+T Y  LL  Y  KG L    G+L  M    + 
Sbjct: 194 DYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 253

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +   +  LV    +  +VEEA ++  +M   G +    TY  V+  L + G    A+ +
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                   ++ D+ ++ SL   L   +++ +A  +  EM  R +
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGI 357



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 63/135 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+    K +K++EA+ V   M + G   +A+T+  ++ VL +  R+E+A   
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  + PD   YN L+ + C          +  +M +  +      +++++   C+
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCK 373

Query: 221 AGRVEEAFVLLRRMV 235
            GRV E+  L   MV
Sbjct: 374 EGRVIESGKLFDLMV 388


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 35/244 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL--------------- 145
           P    Y +LI  L K  KID+A R+ + M + G   + I +  ++               
Sbjct: 453 PNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKI 512

Query: 146 --SVLTRGKR------------------MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
              ++ RG R                  +E+   + E MK     PD+ +Y+ L+     
Sbjct: 513 YKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTK 572

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G    TS + + M ++    DAR Y+A+V G C++G+V++A+ +L  M         +T
Sbjct: 573 AGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVAT 632

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y  ++  L ++    +A         + I+L+  L+ SL      + R +EA  IL+EM 
Sbjct: 633 YGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMM 692

Query: 306 KRDL 309
           K+ L
Sbjct: 693 KKGL 696



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 112/264 (42%), Gaps = 19/264 (7%)

Query: 69  TANTFNFITNTENSL------SVLSDLCRTLARLDKGF------------PRKSAYDTLI 110
           T+N F  ++    +L      +V+  LC++  ++DK +            P  + Y +++
Sbjct: 579 TSNIFQAMSQQGFALDARAYNAVVDGLCKS-GKVDKAYEVLEEMKVKHVHPTVATYGSIV 637

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
             L K+ ++DEA  + +     G  L+ I +  ++    +  R++EA+ ++E M +  ++
Sbjct: 638 DGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLT 697

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P++  +N L+ A      +       + M+E K   +  TY  L+ G CR  +  +AFV 
Sbjct: 698 PNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVF 757

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG 290
            + M   G      TY  ++  L ++G    A              D+  F +L   +  
Sbjct: 758 WQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSN 817

Query: 291 LERFNEANFILKEMNKRDLKMGFK 314
             R  EA  + +E   R  ++  K
Sbjct: 818 ANRPMEAYQVFEETRLRGCRLNVK 841



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 100/212 (47%), Gaps = 1/212 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P   +Y  LI  L K  +  E   +   M++ GF L A  ++ ++  L +  ++++A
Sbjct: 555 GFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKA 614

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           + ++E MK   V P +  Y  ++        L     + ++ + + +  +   Y +L+ G
Sbjct: 615 YEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDG 674

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             + GR++EA+++L  M+  G +    T+  +M AL++     +A+             +
Sbjct: 675 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPN 734

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           T  +  L + L  ++++N+A    +EM K+ L
Sbjct: 735 TYTYSILINGLCRVQKYNKAFVFWQEMQKQGL 766



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 5/225 (2%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           ++  P   AY+T+I      ++ D+A ++++ + E G   S ++F+ IL+ L + ++++E
Sbjct: 310 ERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDE 369

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L +VMK+    P+++ YN ++   C  G +     +  +ME   L  +  + + +V 
Sbjct: 370 ALTLFDVMKK-DAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVD 428

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDI 274
             C+A ++EEA  +     + G +    TY  ++  L + G    A +    M+  G D 
Sbjct: 429 RLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDA 488

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYY 319
             +  ++ SL        R  + + I KEM +R  +    L + Y
Sbjct: 489 --NPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTY 531



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 68/134 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  SAY  LIG L + ++ + AL ++  M + G+ +S   F  ++  L R  +ME A  L
Sbjct: 174 PPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALAL 233

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ +K   + PD+  YN  +  +   G++        +++   L  D  +Y ++V   C+
Sbjct: 234 VDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCK 293

Query: 221 AGRVEEAFVLLRRM 234
           AGR+ EA  L  +M
Sbjct: 294 AGRLGEAEELFGQM 307



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 13/223 (5%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---- 78
           F +  A  D P +  Y+ ++   G     +    LL +     C  +  +FN I      
Sbjct: 304 FGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGK 363

Query: 79  ---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
               + +L+ L D+ +  A+     P  S Y+ +I  LC   +++EA ++ D M   G  
Sbjct: 364 KRKVDEALT-LFDVMKKDAK-----PNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLF 417

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + ++ + ++  L +  ++EEA  + E   E   +P+   Y  L+     KG +     +
Sbjct: 418 PNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRL 477

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            +KM +    A+   Y +L+      GR E+   + + M+  G
Sbjct: 478 FEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRG 520



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/208 (18%), Positives = 90/208 (43%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           G P  +  +T +  + K  ++++   + + M   GF     ++  ++  LT+  +  E  
Sbjct: 521 GRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETS 580

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            + + M +   + D  AYN ++   C  G +     VL++M+ + +     TY ++V G 
Sbjct: 581 NIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGL 640

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            +  R++EA++L       G  +    Y+ ++    ++G   +A   +     + +  + 
Sbjct: 641 AKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 700

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
             + SL   L+  E  +EA    + M +
Sbjct: 701 YTWNSLMDALVKTEEIDEALICFQSMKE 728



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 7/194 (3%)

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           +V++ M+  G+GL       +++ L R +R+E+A+ ++  M+ ++  P  +AY  L+ A 
Sbjct: 127 KVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGAL 186

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD---DGQS 240
                      +L++M++         +  LV    R G++E A  L+  +     +   
Sbjct: 187 AEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDI 246

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
           VLY+      G   + G    A KF        ++ D   + S+   L    R  EA  +
Sbjct: 247 VLYNVCIDCFG---KAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEEL 303

Query: 301 LKEMN-KRDLKMGF 313
             +M  +RD+   +
Sbjct: 304 FGQMEAERDVPCAY 317


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 108/221 (48%), Gaps = 2/221 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCKL+ + +A  +V  M + G   S  TF+ ++       ++E+ + +
Sbjct: 402 PDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTV 461

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  +  D+ ++  ++ A+C  G +     +L  M  + +  +A+ Y++++     
Sbjct: 462 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 521

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +G  E+AF+L+ +M + G S    TY  ++  L R     +A + +     + ++ D   
Sbjct: 522 SGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVS 581

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
           + ++ S        ++A  +L+EMNK  ++    LR Y+ +
Sbjct: 582 YNTIISACCNKGDTDKALELLQEMNKYGIRP--TLRTYHTL 620



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 123/280 (43%), Gaps = 2/280 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT+  Y+ L+N     RDL     +  +           T+N + N    L +++     
Sbjct: 367 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL 426

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +  ++K    P    ++TLI       ++++   V+  M + G     I+F  ++    +
Sbjct: 427 VMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCK 486

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++ EA  +++ M    V+P+   YN ++ AY   G+      +++KM+   + A   T
Sbjct: 487 NGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVT 546

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ L+ G CR+ +++EA  L+  + + G      +Y  ++ A    G   +A++ +    
Sbjct: 547 YNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMN 606

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              I+     + +L S L    R ++   + ++M  ++++
Sbjct: 607 KYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVE 646



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I    +    ++A  +V+ M   G   S +T++ +L  L R  +++EA  L
Sbjct: 507 PNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEEL 566

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  ++   + PD+ +YN +++A C KG+      +L++M +  +    RTY  LV     
Sbjct: 567 IYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALAS 626

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           AGRV +   L ++M+        S Y  ++ A +R
Sbjct: 627 AGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVR 661



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 126/279 (45%), Gaps = 10/279 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT----FNFITNTENSLSVLS 87
           +P    Y+ L++       ++  R L+++ A    F    T    F+ +T T  S ++LS
Sbjct: 261 KPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLS 320

Query: 88  DLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
               +L    KG     AY    L+  LCK  K+ +A +V++++   G   + + ++ ++
Sbjct: 321 LFAESLK---KGV-MLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLI 376

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           +   + + +  A+ + E MK   + PD   YN L+   C    +T    ++ +ME+  + 
Sbjct: 377 NGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVD 436

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
               T++ L+     AG++E+ F +L  M   G      ++  V+ A  + G   +AV  
Sbjct: 437 PSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAI 496

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +     +D+  + +++ S+    I      +A  ++++M
Sbjct: 497 LDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKM 535



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 1/229 (0%)

Query: 83  LSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           L V   + R + R +   P  + +Y+ +I  L +  K  +AL+V D M + G   + IT+
Sbjct: 173 LDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITY 232

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + ++    +G  +E  + L + M      P++  YN LL+  C  G +  T  ++ +M  
Sbjct: 233 NTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMAS 292

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             +  D  TY  L  G  R G       L    +  G  +   T + ++  L + G  A+
Sbjct: 293 HSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAK 352

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           A + + +     +   T ++ +L +    +     A  I ++M  R ++
Sbjct: 353 AEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIR 401



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 28/292 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ +++      DLE        R RD   +     N +T       +LS LCR 
Sbjct: 227 PNWITYNTMIDGHVKGGDLEA-----GFRLRDQMLHDGPKPNIVTYN----VLLSGLCRA 277

Query: 93  LARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG---GFGLS 137
             R+D+             FP    Y  L      L +  E+  ++ + AE    G  L 
Sbjct: 278 -GRMDETRVLMDEMASHSMFPDGFTYSILFD---GLTRTGESRTMLSLFAESLKKGVMLG 333

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           A T   +L+ L +  ++ +A  ++E++    + P    YN L+  YC   +L     + +
Sbjct: 334 AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFE 393

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M+   +  D  TY+AL+ G C+   V +A  L+  M   G      T+  ++ A    G
Sbjct: 394 QMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAG 453

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              +    +     + IK D   FGS+        +  EA  IL +M  +D+
Sbjct: 454 QLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 505



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 2/159 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIM--AEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           P   A++ ++        +D AL +V  M  +EG     A +++ +++ L R  +  +A 
Sbjct: 155 PDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 214

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            + + M ++ V P+   YN ++  +   G+L A   +  +M  +    +  TY+ L+ G 
Sbjct: 215 KVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGL 274

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           CRAGR++E  VL+  M          TY+ +   L R G
Sbjct: 275 CRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTG 313



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 35/214 (16%)

Query: 19  VTRSFTKSGAFPDE-------------PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC 65
           V ++F K+G  P+              P +  Y+ +++A     D E    L+ K     
Sbjct: 480 VVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG 539

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRL 113
              +  T+N +         L  LCR+ +++D+              P   +Y+T+I   
Sbjct: 540 VSASIVTYNLL---------LKGLCRS-SQIDEAEELIYTLRNQGLRPDVVSYNTIISAC 589

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           C     D+AL ++  M + G   +  T+H ++S L    R+ +   L + M    V P  
Sbjct: 590 CNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSS 649

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           + Y  ++ AY    N +  + + K+M E+ +  D
Sbjct: 650 SIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMI 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M+  G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLNVGLK 378



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 19/217 (8%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF- 100
           +  +G + D+ T   L+N   ++   + AN             VL D       LDKG  
Sbjct: 197 MQVSGVQPDVYTYSVLINGLCKESKMDDAN-------------VLFD-----EMLDKGLV 238

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +++A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL+ G C+
Sbjct: 299 IDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQ 358

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR  +A  +LR M++ G      TY  ++    + G
Sbjct: 359 EGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKG 395



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + +     S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 188 DEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK   + +A  ++D M   G     IT+  ++    +   +E A+  
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  +  D  AY  L++  C +G       +L++M    L  +  TY  ++   C+
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCK 393

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G V     LL+ M  DG
Sbjct: 394 KGDVWTGSKLLKEMQRDG 411



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A VL   M+D G
Sbjct: 210 SVLINGLCKESKMDDANVLFDEMLDKG 236


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 132/311 (42%), Gaps = 6/311 (1%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDL-ETVRYLLNKR 61
           L+R L     +  + +  ++  K G  PD       ++L+N  G    L + ++     +
Sbjct: 300 LIRGLGKSGRVEDAYMTYKNMLKDGCKPD---VVLMNNLINILGRSNHLRDAIKLFDEMK 356

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKI 119
             +C  N       I +   + + LS+      R+ K    P    Y  LI   CK  ++
Sbjct: 357 LLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRV 416

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           ++AL +++ M E GF      +  +++ L   KR + A  L + +KE         Y  +
Sbjct: 417 EKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVM 476

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +  +   G L     +  +M++     D   Y+AL+ G  RA R++EAF L R M ++G 
Sbjct: 477 IKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGC 536

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +   +++  ++  L R G    A++         IK D   F ++   L     F EA  
Sbjct: 537 TPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAK 596

Query: 300 ILKEMNKRDLK 310
           +++EM+ +  +
Sbjct: 597 LMQEMSSKGFQ 607



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           G      Y  +I    K  +++EA+ + + M + G       ++ +++ + R +RM+EA+
Sbjct: 466 GCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAF 525

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L   M+E   +PD+ ++N +L      G       +  KM+   +  D  +++ ++   
Sbjct: 526 SLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCL 585

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            RAG  EEA  L++ M   G      TY+ ++ A+
Sbjct: 586 SRAGLFEEAAKLMQEMSSKGFQYDLITYSSILEAV 620



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 127/320 (39%), Gaps = 53/320 (16%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFITNTENSLSVLSDLCR 91
           PT++ Y+ ++     E   E V  L N+   +  CF    T++ + +    L+      R
Sbjct: 186 PTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIR 245

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL-------------------------- 123
               + +    P    Y TL+G   K+ K++EAL                          
Sbjct: 246 LFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLG 305

Query: 124 ---RVVDI------MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
              RV D       M + G     +  + ++++L R   + +A  L + MK +  +P++ 
Sbjct: 306 KSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVV 365

Query: 175 AYNYLLTA-YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
            YN ++ + +  K  L+  S   ++M+++ +   + TY  L+ G C+  RVE+A +LL  
Sbjct: 366 TYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEE 425

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV----CG---GRDIKLDTELFGSLGS 286
           M + G     + Y  ++  L     Y  A +        CG    R   +  + FG  G 
Sbjct: 426 MDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCG- 484

Query: 287 KLIGLERFNEANFILKEMNK 306
                 R NEA  +  EM K
Sbjct: 485 ------RLNEAINLFNEMKK 498



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 52/210 (24%)

Query: 66  CFNTANTFNFIT-------NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKK 118
           C  TA+T+N I        + E    + +++C  +      FP    Y  LI    KL +
Sbjct: 184 CRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEV----HCFPDTVTYSALISAFAKLNR 239

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
            D A+R+ D M E G   +A  +  ++ +  +  ++EEA GL++ M+  R          
Sbjct: 240 DDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRC--------- 290

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           LLT +                          TY  L+ G  ++GRVE+A++  + M+ DG
Sbjct: 291 LLTVF--------------------------TYTELIRGLGKSGRVEDAYMTYKNMLKDG 324

Query: 239 ---QSVLYSTYAHVMGALLRLGYYAQAVKF 265
                VL +   +++G   R  +   A+K 
Sbjct: 325 CKPDVVLMNNLINILG---RSNHLRDAIKL 351



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 86/205 (41%), Gaps = 5/205 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + +++L+     + G FP  P  A Y  L+N  G  +  +    L  +   +C  ++A  
Sbjct: 416 VEKALLLLEEMDEKG-FP--PCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARV 472

Query: 73  FNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           +  +         L++       + K    P   AY+ L+  + + +++DEA  +   M 
Sbjct: 473 YAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTME 532

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           E G      + + IL+ L R    + A  +   MK   + PD+ ++N +L      G   
Sbjct: 533 ENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFE 592

Query: 191 ATSGVLKKMEEEKLGADARTYDALV 215
             + ++++M  +    D  TY +++
Sbjct: 593 EAAKLMQEMSSKGFQYDLITYSSIL 617



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 5/187 (2%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y  LI  L + +   E  + +  M +G   ++      I+ +L + K +  A  +   
Sbjct: 119 TTYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQ 178

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGACRAG 222
           +K  +  P  + YN ++     +G+      +  +M  E     D  TY AL+    +  
Sbjct: 179 VKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLN 238

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD----T 278
           R + A  L   M ++G       Y  +MG   ++G   +A+  V     R   L     T
Sbjct: 239 RDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYT 298

Query: 279 ELFGSLG 285
           EL   LG
Sbjct: 299 ELIRGLG 305


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 99/204 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + ++TLI  LC   K+ +A+ +VD M E G     +T++ I++ + R      A+ +
Sbjct: 156 PDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDM 215

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  V  D+  Y+ ++ + C  G + A   + K+ME + + +   TY++LV G C+
Sbjct: 216 LRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCK 275

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG+  +  +LL+ MV         T+  ++   ++ G   +A +       R I  +   
Sbjct: 276 AGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIIT 335

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L        R +EAN +L  M
Sbjct: 336 YNTLMDGYCMQNRLSEANNMLDLM 359



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 90/203 (44%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + +I   C+  K   A  V+  + + G+     TF+ +++ L    ++ +A  L++ M E
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVE 186

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
               PD+  YN ++   C  G+ +    +L+KMEE  + AD  TY  ++   CR G ++ 
Sbjct: 187 NGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDA 246

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  L + M   G      TY  ++  L + G +      +     R+I  +   F  L  
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLD 306

Query: 287 KLIGLERFNEANFILKEMNKRDL 309
             +   +  EAN + KEM  R +
Sbjct: 307 VFVKEGKLQEANELYKEMITRGI 329



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 133/324 (41%), Gaps = 25/324 (7%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK- 60
           +L+  L  +  + ++V++     ++G  PD  T   Y+ +VN      D      +L K 
Sbjct: 163 TLINGLCLEGKVSKAVVLVDRMVENGCQPDMVT---YNSIVNGICRSGDTSLAFDMLRKM 219

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCR-----TLARLDKGFPRKS------AYDTL 109
             R+     A+ F + T       ++  LCR         L K    K        Y++L
Sbjct: 220 EERNV---KADVFTYST-------IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSL 269

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           +  LCK  K ++   ++  M       + ITF+ +L V  +  +++EA  L + M    +
Sbjct: 270 VRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGI 329

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           SP++  YN L+  YC +  L+  + +L  M   K   D  T+ +L+ G C   RV++   
Sbjct: 330 SPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMK 389

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           + R +   G      TY+ ++    + G    A +         +  D   +G L   L 
Sbjct: 390 VFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC 449

Query: 290 GLERFNEANFILKEMNKRDLKMGF 313
              +  +A  I +++ K  + +G 
Sbjct: 450 DNGKLEKALEIFEDLQKSKMDLGI 473



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 83/177 (46%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   +  T + +++   R  +   A+ ++  + ++   PD T +N L+   C +G ++  
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKA 177

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             ++ +M E     D  TY+++V G CR+G    AF +LR+M +        TY+ ++ +
Sbjct: 178 VVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDS 237

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           L R G    A+        + IK     + SL   L    ++N+   +LK+M  R++
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 76/155 (49%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  L+  LC   K+++AL + + + +    L  + +  I+  + +G ++E+AW 
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   +    V P++  Y  +++  C KG+L+  + +L+KMEE+    +  TY+ L+    
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 554

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           R G +  +  L+  M   G S   S+   V+  LL
Sbjct: 555 RDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLL 589



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 88/183 (48%), Gaps = 1/183 (0%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           +N LS  +++   + R +K  P    + +LI   C +K++D+ ++V   +++ G   +A+
Sbjct: 346 QNRLSEANNMLDLMVR-NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 404

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  ++    +  +++ A  L + M    V PD+  Y  LL   C  G L     + + +
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           ++ K+      Y  ++ G C+ G+VE+A+ L   +   G      TY  ++  L + G  
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524

Query: 260 AQA 262
           ++A
Sbjct: 525 SEA 527



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 35/241 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+    K  K+ EA  +   M   G   + IT++ ++       R+ EA  +
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M   + SPD+  +  L+  YC    +     V + + +  L A+A TY  LV G C+
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF-------------VM 267
           +G+++ A  L + MV  G      TY  ++  L   G   +A++              VM
Sbjct: 416 SGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVM 475

Query: 268 -------VCGGRDIKLDTELFGSLGSK------------LIGLER---FNEANFILKEMN 305
                  +C G  ++    LF SL  K            + GL +    +EAN +L++M 
Sbjct: 476 YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 535

Query: 306 K 306
           +
Sbjct: 536 E 536



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 74/172 (43%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           + F    S + R K+        + ++   ++ ++   N ++  +C          VL K
Sbjct: 89  VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 148

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           + +     D  T++ L+ G C  G+V +A VL+ RMV++G      TY  ++  + R G 
Sbjct: 149 VMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGD 208

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            + A   +     R++K D   + ++   L      + A  + KEM  + +K
Sbjct: 209 TSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIK 260


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 102/216 (47%), Gaps = 2/216 (0%)

Query: 96  LDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           + +G PR +   ++++I  LCK  ++ EA  + D++   G     ITF+ ++       +
Sbjct: 499 MSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGK 558

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           ME+A+G+++ M  + + PD+  Y+ LL  YC  G +     + ++M  + +     TY  
Sbjct: 559 MEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGI 618

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++ G    GR   A  +   M++ G ++  ST   ++G L R     +A+      G  +
Sbjct: 619 ILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMN 678

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +K +  +  ++   +  + +  EAN +   ++   L
Sbjct: 679 VKFNIAIINTMIDAMYKVRKREEANELFDSISATGL 714



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 11/221 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y++LI   C    + +A  ++ ++M+ G    + + F+ I++ L +  R+ EA  
Sbjct: 470 PDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQD 529

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + +++  I   PD+  +N L+  Y   G +    GVL  M    +  D  TY AL+ G C
Sbjct: 530 IFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYC 589

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLD 277
           R GR+++  +L R M+  G      TY  ++  L   G    A K    M+  G  + + 
Sbjct: 590 RNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDIS 649

Query: 278 TELFGSLGSKLIGLERFN---EANFILKEMNKRDLKMGFKL 315
           T      G  L GL R N   EA  + K++   ++K    +
Sbjct: 650 T-----CGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAI 685



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 1/221 (0%)

Query: 88  DLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           DL  T+ +   G  P   +Y+T+I    +  ++ +A  +   M + G     +T+   + 
Sbjct: 211 DLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYID 270

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L + + M++A  ++  M      PD   YN ++  Y   G    T+G+ ++M    L  
Sbjct: 271 ALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMP 330

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D  T ++ +   C+ G+ +EA      M   G      TY+ ++      GY    +   
Sbjct: 331 DIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLF 390

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
               G  I  D  ++  L          +EA  I  +M +R
Sbjct: 391 NSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQER 431



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 92/217 (42%), Gaps = 5/217 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +  GF P K  Y+ +I     L +  E   +   M   G      T +  +S L +  + 
Sbjct: 289 ISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKS 348

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA    + M      PDL  Y+ LL  Y  +G +     +   ME   + AD   Y+ L
Sbjct: 349 KEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNIL 408

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV-KF-VMVCGGR 272
           +    + G ++EA ++  +M + G      TY  V+ A  R+G  A A+ KF  M+  G 
Sbjct: 409 IDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMG- 467

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +K DT ++ SL           +A  ++ EM  R +
Sbjct: 468 -LKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGI 503



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 2/167 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE--GGFGLSAITFHPILSVLTRGKRMEEAW 158
           P   +Y T++  LC+  +   AL ++  M +  GG   + ++++ ++    R   + +A 
Sbjct: 188 PDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKAC 247

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L   M +  V PD+  Y+  + A C    +     VL++M       D  TY+ ++ G 
Sbjct: 248 NLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGY 307

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
              G+ +E   + R M   G      T    M +L + G   +A +F
Sbjct: 308 SILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEF 354


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y TLI   CK+K +DEALR++  M +       +T++ +L  L++  R+   W 
Sbjct: 334 LPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWD 393

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+E M+    +PDL  YN LL  Y  +  L     + + + +  +  + RTY+ L+ G C
Sbjct: 394 LVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLC 453

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + GR++ A  + + +   G      TY  ++  L R G
Sbjct: 454 KGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREG 491



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 8/189 (4%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYD-----TLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           NSL+ L  +    + + K   R    D     TL+  LC   +  EAL + D     GF 
Sbjct: 99  NSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFS 158

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
              + +  +++ L +  +  +A  L+  M++  V P+L  YN ++   C +G +T   G+
Sbjct: 159 FDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGL 218

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV--DDGQSVLYSTYAHVMGAL 253
             +M  + +  D  TY++L+ G C AG+ + A  LL  MV  +D +  +Y T+  ++ AL
Sbjct: 219 CSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVY-TFNILVDAL 277

Query: 254 LRLGYYAQA 262
            +LG  A+A
Sbjct: 278 CKLGMVAEA 286



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 115/293 (39%), Gaps = 20/293 (6%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           S +     P  PT   +DD V+         T   +L+        +     + I  T++
Sbjct: 23  SHSPRKTLPKTPT---FDDAVS---------TFHRMLHLHPPPSIVSLNKLLSSIMKTKH 70

Query: 82  SLSVLSDLCRTLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
             +V+S LC  L    KG P+ S       I  L  L ++  A  V+  + + GFG+   
Sbjct: 71  YPTVVS-LCSHLD--SKGTPKPSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPF 127

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   ++  L    R  EA  L +       S D   Y  L+   C  G       +L+KM
Sbjct: 128 TLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKM 187

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           E+  +  +   Y+ +V G C+ G V EA  L   MV  G  +   TY  ++      G +
Sbjct: 188 EKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQF 247

Query: 260 AQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             AV+ +  MV    D++ D   F  L   L  L    EA  +   M KR L+
Sbjct: 248 QGAVRLLNEMVM-KEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLE 299



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 5/201 (2%)

Query: 88  DLCRTLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           D    L +++KG  R +   Y+ ++  LCK   + EA  +   M   G  +   T++ ++
Sbjct: 179 DAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLI 238

Query: 146 SVLTRGKRMEEAWGLME--VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
                  + + A  L+   VMKE  V PD+  +N L+ A C  G +     V   M +  
Sbjct: 239 HGFCGAGQFQGAVRLLNEMVMKE-DVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRG 297

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           L  D  + +AL+ G C  G + EA  +  RMV+ G+     +Y+ ++    ++    +A+
Sbjct: 298 LEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEAL 357

Query: 264 KFVMVCGGRDIKLDTELFGSL 284
           + +     R++  DT  +  L
Sbjct: 358 RLLTEMHQRNLVPDTVTYNCL 378



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 68/146 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  LCKL  + EA  V  +M + G     ++ + +++       M EA  +
Sbjct: 265 PDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEV 324

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E    P++ +Y+ L+  YC    +     +L +M +  L  D  TY+ L+ G  +
Sbjct: 325 FDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSK 384

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +GRV   + L+  M   GQ+    TY
Sbjct: 385 SGRVLYEWDLVEAMRASGQAPDLITY 410



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 70/162 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   + + L+   C    + EA  V D M E G   + I++  +++   + K ++EA  L
Sbjct: 300 PDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRL 359

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  + PD   YN LL      G +     +++ M       D  TY+ L+    +
Sbjct: 360 LTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLK 419

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              +++A  L + +VD G S    TY  ++  L + G    A
Sbjct: 420 RECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAA 461


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 2/205 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P+   Y+ L+     +  +     L+N  +++       T+N + N    +  +SD   
Sbjct: 360 KPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANN 419

Query: 92  TL-ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L A + KG+ P    ++TLI   CK  K+D A+ ++D M   G     IT++ IL+ L 
Sbjct: 420 LLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLC 479

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  + E+     +++ E    P++  YN L+ + C    +T    +L+++    L  D  
Sbjct: 480 KAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPV 539

Query: 210 TYDALVLGACRAGRVEEAFVLLRRM 234
           ++  ++ G C  G ++EA+ L RRM
Sbjct: 540 SFGTVISGFCNNGDLDEAYQLFRRM 564



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 13/210 (6%)

Query: 48  ERDLETVRYLLNKRARDCCFNTANTFNFITN--TENSLSVLSDLCRTLARLDKGFPRKSA 105
           +R L  +R L N  ++ C  N       I+    EN      +L   + RL   FP  + 
Sbjct: 160 KRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGI-FPHIAT 218

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME-------EAW 158
           ++ L+  LCK   + E  ++++ + + G   +  TF+  +  L R   +E       EA 
Sbjct: 219 FNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAE 278

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
             +  M    + PD   YN ++  Y   G +   S +LK  + +    D  TY +L++G 
Sbjct: 279 NYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGV 338

Query: 219 CRAGRVEEAFVLLRRMVDDG---QSVLYST 245
           C+ G ++ A  L    +  G     VLY+T
Sbjct: 339 CQDGDIDHALALFEEALGKGLKPSIVLYNT 368



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 98/213 (46%), Gaps = 1/213 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KG  P    Y+TLI  L +   + +AL++++ M++ G      T++ +++ L +   +
Sbjct: 355 LGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCV 414

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  L+         PD+  +N L+  YC +  +    G+L  M    +  D  TY+++
Sbjct: 415 SDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSI 474

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+A + E+     + +++ G      TY  ++ +L +     +A+  +     R +
Sbjct: 475 LNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGL 534

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             D   FG++ S        +EA  + + M ++
Sbjct: 535 IPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQ 567



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 2/186 (1%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N I    + +  + D  R L     KGF P +  Y +LI  +C+   ID AL + +  
Sbjct: 295 TYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEA 354

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   S + ++ ++  L++   + +A  LM  M +  +SPD+  YN ++   C  G +
Sbjct: 355 LGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCV 414

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
           +  + +L     +    D  T++ L+ G C+  +++ A  +L  M   G +    TY  +
Sbjct: 415 SDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSI 474

Query: 250 MGALLR 255
           +  L +
Sbjct: 475 LNGLCK 480



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 7/173 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +   I   C+ K+   ALR+++ M   G  L+A+ +  ++S         EA+ L
Sbjct: 144 PDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYEL 203

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M  + + P +  +N L+   C KG+L     +L K+ +  +  +  T++  + G CR
Sbjct: 204 FNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCR 263

Query: 221 AG-------RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G       +V EA   L +MV+ G      TY  ++    ++G    A + +
Sbjct: 264 KGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRIL 316



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 9/215 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSV 85
           P  A ++ L++    +  L+    LLNK  ++       TFN            E + S 
Sbjct: 214 PHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSK 273

Query: 86  LSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           + +    L ++ +KG  P    Y+T+I    K+ KI +A R++      GF     T+  
Sbjct: 274 VVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCS 333

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++  + +   ++ A  L E      + P +  YN L+     +G +     ++  M +E 
Sbjct: 334 LIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEG 393

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +  D  TY+ ++ G C+ G V +A  LL   +  G
Sbjct: 394 MSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKG 428



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 8/228 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTF 73
            ++ +  S    G  PD  T ++  + L  AA  E  +ET + ++ K     C     T+
Sbjct: 451 NAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKG----CLPNIITY 506

Query: 74  NFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           N +  +      +++    L  + ++G  P   ++ T+I   C    +DEA ++   M +
Sbjct: 507 NILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQ 566

Query: 132 G-GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
                 +  T++ +++  +    M+ A  L   M +    PD   Y  ++  +C  GN+ 
Sbjct: 567 QYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVN 626

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +    L K  E        T+  ++   C   RV EA  ++  MV  G
Sbjct: 627 SGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTG 674



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 42/113 (37%)

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R  +++EA  + E M      P + +YN ++      G       V  +M+ E +  D  
Sbjct: 88  RKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVC 147

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           T+   +   CR  R   A  LL  M   G  +    Y  V+       Y  +A
Sbjct: 148 TFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEA 200



 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 63/149 (42%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+ EA+ V + M       S  +++ I+++L       +A  +   MK   ++PD+  + 
Sbjct: 91  KVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFT 150

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
             + ++C      A   +L  M  +    +A  Y  ++ G        EA+ L  +M+  
Sbjct: 151 IRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRL 210

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G     +T+  +M  L + G+  +  K +
Sbjct: 211 GIFPHIATFNKLMHILCKKGHLQEGEKLL 239


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 9/191 (4%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKR 153
           L +G P   +Y+ L+  LC   +  EAL ++ IMA+ G       +++  +++   +   
Sbjct: 44  LRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFK--- 100

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
                G ++ M + R+SP++  YN ++ A C    +     VL  M +  +  D  TY++
Sbjct: 101 ----EGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNS 156

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           +V G C +G+ +EA V L++M  DG      TY  +M  L + G   +A K       R 
Sbjct: 157 IVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRG 216

Query: 274 IKLDTELFGSL 284
           +K D   +G+L
Sbjct: 217 LKPDITTYGTL 227



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 6/193 (3%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D   P    Y++L+  LCK  +  EA ++ D M + G      T+  +L        +
Sbjct: 178 RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGAL 237

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E  GL+++M    + P+   ++ L+ AY  +  +     V  KM ++ L  +A TY  +
Sbjct: 238 VEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTV 297

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           +   C++GRVE+A +   +M+D+G    S++Y++  H   +L     + +A +  +    
Sbjct: 298 IDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIH---SLCIFDKWEKAEELFLEMLD 354

Query: 272 RDIKLDTELFGSL 284
           R I L T  F S+
Sbjct: 355 RGICLSTIFFNSI 367



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 118/284 (41%), Gaps = 19/284 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI-------TNTENSLSV 85
           P    Y  ++N    E DL+    +L++R          T+N I          + ++ V
Sbjct: 86  PDVVSYSTVINGFFKEGDLDK---MLDQRISP----NVVTYNSIIAALCKAQTVDKAMEV 138

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L+ + ++        P    Y++++   C   +  EA+  +  M   G     +T++ ++
Sbjct: 139 LTTMVKSGV-----MPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLM 193

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L +  R  EA  + + M +  + PD+T Y  LL  Y  KG L    G+L  M    + 
Sbjct: 194 DYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 253

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +   +  LV    +  +VEEA ++  +M   G +    TY  V+  L + G    A+ +
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                   ++ D+ ++ SL   L   +++ +A  +  EM  R +
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGI 357



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 63/135 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+    K +K++EA+ V   M + G   +A+T+  ++ VL +  R+E+A   
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  + PD   YN L+ + C          +  +M +  +      +++++   C+
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCK 373

Query: 221 AGRVEEAFVLLRRMV 235
            GRV E+  L   MV
Sbjct: 374 EGRVIESGKLFDLMV 388


>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
 gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
          Length = 607

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 97  DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G+P  +  Y T+I  L +  ++ +A  +   M + GF L    ++ ++    R KR+ 
Sbjct: 340 DQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLH 399

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L E MK   + PD+  YN LL+  C  G+ +A   +L  M ++       T+  LV
Sbjct: 400 EAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLV 459

Query: 216 LGACRAGRVEEAFVLLRRMVD---DGQSVLYST 245
            G C+AG+ +EA  + R M +      +V+Y+T
Sbjct: 460 HGYCKAGKTDEALKIFRSMGEARIQPNTVIYNT 492



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 91/205 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TL+        +  A+ +   MA+ G+   A+ +  ++S LT+  R+ +A  +   MK
Sbjct: 315 YSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMK 374

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +     D  AYN L+  +C K  L     + ++M+   L  D  TY+ L+   C+AG   
Sbjct: 375 KAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFS 434

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
               LL  M+DDG      T+  ++    + G   +A+K     G   I+ +T ++ +L 
Sbjct: 435 AVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLI 494

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
             L      + A  +  EM + ++ 
Sbjct: 495 DFLCKSREVDVAIKLFDEMRENNVP 519



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 41/251 (16%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAW 158
           P    Y  L+ RLCK   + +AL+V+D M+  G  + A  +  + ++  L +  R+++A 
Sbjct: 164 PDIVTYGILLNRLCKAGLVGDALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAI 223

Query: 159 GLM-EVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
             + E M+++   +P+   YN L  A C  G++     ++++ME+E +  +  T + +V 
Sbjct: 224 VFVDERMRQVHGCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVG 283

Query: 217 GACRAGRVEEAFVLLRR-----MVDDGQSVLYST----YAHVMGALLRL---------GY 258
           G CR GRV  A    R      +   G +V YST    + H     L +         GY
Sbjct: 284 GLCRVGRVGAALDFFREKRTTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQGY 343

Query: 259 YAQAVK-FVMVCG----GRDI--------------KLDTELFGSLGSKLIGLERFNEANF 299
              AV  F M+ G    GR +              KLD + +  L       +R +EA+ 
Sbjct: 344 PPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQ 403

Query: 300 ILKEMNKRDLK 310
           + +EM    L+
Sbjct: 404 LFEEMKGAGLQ 414



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  LCK         ++  M + G   S +TF  ++    +  + +EA  +
Sbjct: 415 PDVYTYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKI 474

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E R+ P+   YN L+   C    +     +  +M E  + A+  TY+AL+ G   
Sbjct: 475 FRSMGEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQD 534

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
               E+AF L+ +M ++  +  Y T   +M  L  +G
Sbjct: 535 KNMPEKAFELMDQMKEERCTPDYVTMDVLMEWLPEIG 571



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 2/170 (1%)

Query: 86  LSDLCRTLARLDK-GFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           L D C   A + K GF   + AY+ LIG  C+ K++ EA ++ + M   G      T++ 
Sbjct: 363 LVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNT 422

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +LS L +         L+  M +    P +  +  L+  YC  G       + + M E +
Sbjct: 423 LLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEAR 482

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +  +   Y+ L+   C++  V+ A  L   M ++      +TY  ++  L
Sbjct: 483 IQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGL 532



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 13/209 (6%)

Query: 60  KRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLK 117
           ++   C  NT  T+N + +    +  +   C+ + R++K    P     +T++G LC++ 
Sbjct: 231 RQVHGCAPNTV-TYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVG 289

Query: 118 KIDEAL------RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           ++  AL      R   + A G    +A+T+  ++S       +  A  L   M +    P
Sbjct: 290 RVGAALDFFREKRTTWLEARG----NAVTYSTLVSAFLHCNNVALAMELFHEMADQGYPP 345

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           D   Y  +++     G L     +   M++     D + Y+ L+ G CR  R+ EA  L 
Sbjct: 346 DAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLF 405

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
             M   G      TY  ++  L + G ++
Sbjct: 406 EEMKGAGLQPDVYTYNTLLSCLCKAGDFS 434



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 107/269 (39%), Gaps = 20/269 (7%)

Query: 9   TKFLIPQSVLVTRS----FTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRAR 63
           T+ L+P +V   RS     + S   P+ P  +A   DL++  GH     T+  L     R
Sbjct: 4   TRRLVPPAVHKLRSRRCLSSTSSPTPNTPNATAILADLLH--GHTPSTATLSLL-----R 56

Query: 64  DCCFNTANTFNFITNTENSLSV--LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDE 121
                 +  +  I    ++ +   L+ L    AR     P  S    L+ R       D 
Sbjct: 57  ASPGLASELYGLIGEPSHAFTPASLATLHSLAARHCIPPPSASLLSKLLARFSS--PADA 114

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A  + D +A G       TF+ +LS L R   +     L   M+E  V PD+  Y  LL 
Sbjct: 115 ASFLRDSLAAGAPAPDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLN 174

Query: 182 AYCFKGNLTATSGVLKKMEE--EKLGADARTYDALVLGACRAGRVEEAFVLL-RRMVD-D 237
             C  G +     VL +M      + AD    + +V G C+ GR+++A V +  RM    
Sbjct: 175 RLCKAGLVGDALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVH 234

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G +    TY  +  A  R+G    A + V
Sbjct: 235 GCAPNTVTYNCLADACCRVGDIDMACQIV 263


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 2/169 (1%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++K F P     + L+  LC    +D AL++ +     G  + A+T++ I+S L +  R 
Sbjct: 397 VEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRF 456

Query: 155 EEAWGLMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           EEA+ L+  M+E   + PD T YN ++  YC +G +        KM E+    D  T + 
Sbjct: 457 EEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNI 516

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           L+ G CR G + +A  L    +  G+++   TY  ++  L + G + +A
Sbjct: 517 LLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEA 565



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 103/241 (42%), Gaps = 37/241 (15%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK-RMEEAWGLMEVM 164
           Y+T+I  LCK  + +EA  ++  M E   G    T++ IL  L   + ++E+A+     M
Sbjct: 337 YNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKM 396

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNL-----------------------TATSGVLKK--- 198
            E    PDL   N LL   C +G L                       T  SG+ K+   
Sbjct: 397 VEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRF 456

Query: 199 ---------MEEEK-LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                    MEE+  L  D  TY+ ++LG CR G+VE+AF    +MV+        T   
Sbjct: 457 EEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNI 516

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++  L R G   +A+K       +   +D   + ++ S L    RF EA  +L EM ++ 
Sbjct: 517 LLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKK 576

Query: 309 L 309
           L
Sbjct: 577 L 577



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 100 FPRKSAYDTLIG--RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           FP  ++Y+T++    LC+  K D+++  ++ + E G     IT++ I+    R  ++E+A
Sbjct: 224 FPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKA 283

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +     M E    PDL   N LL   C +G L     +      +    DA TY+ ++ G
Sbjct: 284 FQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISG 343

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            C+ GR EEAF LL  M +        TY  ++ AL
Sbjct: 344 LCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCAL 379



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 84  SVLSDLCRTLARLDKGF-------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           +++S LC+   R ++ F             P ++ Y+T+I   C+  ++++A +  + M 
Sbjct: 445 TIISGLCKE-GRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMV 503

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           E  F     T + +L  L R   + +A  L         + D   YN +++  C +G   
Sbjct: 504 EKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFE 563

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               +L +M+E+KLG D  TY+A++     AGR+E
Sbjct: 564 EAFDLLAEMKEKKLGPDCYTYNAILCALADAGRME 598



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 2/159 (1%)

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY--CFKGNLTATSGVLKKMEEEKLGADART 210
           ++ EA GL+  MK+    PD  +YN +L     C  G    +   L ++ E  L     T
Sbjct: 207 KLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQIT 266

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ ++ G CR G+VE+AF    +MV+        T   ++  L   G    A+K      
Sbjct: 267 YNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWI 326

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +   +D   + ++ S L    RF EA  +L EM ++ L
Sbjct: 327 SKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKL 365



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 2/147 (1%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVL--TRGKRMEEAWGLMEVMKEIRVSPDLTA 175
           K+ EA+ ++  M +        +++ IL VL   R  + +++   +  + E  + P    
Sbjct: 207 KLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQIT 266

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           YN ++  YC +G +        KM E+    D  T + L+ G C  G ++ A  L    +
Sbjct: 267 YNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWI 326

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQA 262
             G+++   TY  ++  L + G + +A
Sbjct: 327 SKGKAIDAVTYNTIISGLCKEGRFEEA 353


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 7/237 (2%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILS 146
           DL + +A + K  P    +  L+G + +LK    A+ +V  I +  G     IT + +++
Sbjct: 62  DLFQGMASM-KPLPSVKDFTLLLGVIVRLKHYTTAISLVKHIFSSLGIEADTITLNIVIN 120

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L R K +   + ++  M ++ + P +     L+   C +GN+    G++  ME+ +   
Sbjct: 121 CLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVDHMEKMRYPL 180

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D  TY  L+ G C+ G    A   LR+M +         Y+ +M  L + G  ++A+   
Sbjct: 181 DVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLC 240

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
               G+ ++ +   +  L   L    R+ E   +L EM    +KMG +L D   +N+
Sbjct: 241 SEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEM----IKMGMRL-DLQTLNI 292



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 5/228 (2%)

Query: 84  SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           S+L ++ +   RLD         + L+   CK  K+ +A  V+  M   G G    T++ 
Sbjct: 273 SLLDEMIKMGMRLDL-----QTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNS 327

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++ +     +M EA  +  +M      PD+  +  L+  +C   N+     +L++M +  
Sbjct: 328 LIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMG 387

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
              D  T+  L+ G C+AGR   A  L   M   GQ     T A ++  L +    ++AV
Sbjct: 388 FVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAV 447

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
                    ++ L+  ++  L   +    + N A  +   +  + L++
Sbjct: 448 SLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQI 495



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 34/266 (12%)

Query: 32  EPTSAYYDDLVN----------AAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           EPT      L+N          A G    +E +RY L+       +      N +  T +
Sbjct: 144 EPTVMTLTALINGLCVQGNVAQAVGLVDHMEKMRYPLD------VYTYGVLINGLCKTGD 197

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           +L+ +  L +   R  K  P    Y T++  LCK   + EAL +   M+  G   + +T+
Sbjct: 198 TLAAVEWLRKMEERNWK--PNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTY 255

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++  L    R +E   L++ M ++ +  DL   N L+ A+C +G +     V+  M  
Sbjct: 256 ACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMIL 315

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST------------- 245
              G D  TY++L+   C   ++ EA  +   MV  G     V++++             
Sbjct: 316 TGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINK 375

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGG 271
             H++  + ++G+    V +  + GG
Sbjct: 376 VMHLLEEMAKMGFVPDVVTWTTLIGG 401



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 1/180 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P    + TLIG  C+  +   A  +   M + G   +  T   IL  L +G  + EA
Sbjct: 387 GFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEA 446

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L E M++  +  ++  Y+ LL   C  G L A   +   +  + L  +  TY  ++ G
Sbjct: 447 VSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKG 506

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+ G +++A  LL  M ++G      TY   +  LL     A+++K++ +   +   +D
Sbjct: 507 LCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVD 566



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 2/164 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    + +LI   CK K I++ + +++ MA+ GF    +T+  ++    +  R   A  
Sbjct: 354 LPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKE 413

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK-MEEEKLGADARTYDALVLGA 218
           L   M +    P+L     +L   C KGNL + +  L + ME+  L  +   Y  L+ G 
Sbjct: 414 LFLNMHKYGQVPNLQTCAVILDGLC-KGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGM 472

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           C AG++  A+ L   +   G  +   TY  ++  L + G   +A
Sbjct: 473 CSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKA 516



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 4/178 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P       LI  LC    + +A+ +VD M +  + L   T+  +++ L +      A   
Sbjct: 145 PTVMTLTALINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEW 204

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E    P++  Y+ ++   C  G ++    +  +M  + +  +  TY  L+ G C 
Sbjct: 205 LRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCN 264

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA---VKFVMVCG-GRDI 274
            GR +E   LL  M+  G  +   T   ++ A  + G   QA   + F+++ G G D+
Sbjct: 265 FGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDV 322



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 61/157 (38%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC   +  E   ++D M + G  L   T + ++    +  ++ +A  +
Sbjct: 250 PNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSV 309

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M      PD+  YN L+  YC +  +     V   M       D   + +L+ G C+
Sbjct: 310 IGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCK 369

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              + +   LL  M   G      T+  ++G   + G
Sbjct: 370 DKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAG 406


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 2/219 (0%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
            PT   Y  L++       LE    L  + +   C      FN + N    +      C+ 
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 93   LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              R+ ++G  P   +Y  L+  LC   ++DEAL   + +   G     I ++ I++ L +
Sbjct: 951  FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGK 1010

Query: 151  GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +RMEEA  L   M+   + PDL  YN L+      G +     + ++++   L  D  T
Sbjct: 1011 SQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFT 1070

Query: 211  YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            Y+AL+ G   +   E A+ + + M+ DG +    TYA +
Sbjct: 1071 YNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 2/254 (0%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
            PT A Y+ L+         E    L        C   A TFN +         +++L   
Sbjct: 786  PTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 93   LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
               +   +  P    Y+ +I  L K   +D+AL     +    F  +  T+ P++  L +
Sbjct: 846  YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905

Query: 151  GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              R+EEA  L E M +    P+   +N L+  Y   G+      + K+M  E +  D ++
Sbjct: 906  VGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKS 965

Query: 211  YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
            Y  LV   C AGRV+EA      +   G    +  Y  ++  L +     +A+       
Sbjct: 966  YTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMR 1025

Query: 271  GRDIKLDTELFGSL 284
             R I  D   + SL
Sbjct: 1026 NRGIVPDLYTYNSL 1039



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++    K+ ++DEA+ ++  M   G     I  + ++  L +  R++EAW +
Sbjct: 505 PDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQM 564

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + MK++++SP +  YN LL+    +G +     + + M E+K   +  +++ L+   C+
Sbjct: 565 FDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCK 624

Query: 221 AGRVEEAFVLLRRM--VDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
              VE A  +  +M  +D    VL  TY  V+  L++      A  F
Sbjct: 625 NDEVELALKMFSKMTVMDCKPDVL--TYNTVIYGLIKENKVNHAFWF 669



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 5/159 (3%)

Query: 76  ITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           +   + ++++LS++ R         P     ++LI  L K  ++DEA ++ D M +    
Sbjct: 520 VGQVDEAVNLLSEMIRNGCE-----PDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS 574

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +T++ +LS L +  R+++A  L E M E + SP+  ++N LL  +C    +     +
Sbjct: 575 PTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKM 634

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             KM       D  TY+ ++ G  +  +V  AF    ++
Sbjct: 635 FSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL 673



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 2/215 (0%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    +  L+  LCK +  DEA    D+M + G   +  T++ ++  L R  R+E+
Sbjct: 361 DGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIED 420

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L+  M+ + V P    YN  +  +   G         +KM+ + +  +    +A + 
Sbjct: 421 ALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLY 480

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
                GR+ EA  +   + ++G +    TY  +M    ++G   +AV  +        + 
Sbjct: 481 SLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEP 540

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           D  +  SL   L    R +EA  +   M  +D+K+
Sbjct: 541 DVIVVNSLIDSLYKAGRVDEAWQMFDRM--KDMKL 573



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 8/232 (3%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALR 124
            +T  T NF+         + D+      + K   R+    Y T+   L     + +   
Sbjct: 119 LHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTT 178

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           V++ M + GF L+A +++ ++ +L +     EA  +   M    + P L  Y+ L+ A  
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALG 238

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            K +      +LK+ME+  L  +  T+   +    RAG+++EA+ + RRM D+G      
Sbjct: 239 KKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLV 298

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
           TY  ++ AL   G    A +  +       K D  ++ +L      L++FN+
Sbjct: 299 TYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITL------LDKFND 344



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 67/166 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +   I  L +  KIDEA  +   M + G G   +T+  ++  L    ++E A  L
Sbjct: 260 PNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKEL 319

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK     PD   Y  LL  +   G+L        +ME +    D  T+  LV   C+
Sbjct: 320 FVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCK 379

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           A   +EAF     M   G      TY  ++  LLR G    A+K +
Sbjct: 380 ARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL 425



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 108/283 (38%), Gaps = 43/283 (15%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F K  A   +P    Y  L++      DL+T +   ++   D       TF  + +    
Sbjct: 320 FVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDV--- 376

Query: 83  LSVLSDLCRTLARLD----KG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           L    D     A  D    +G  P    Y+TLI  L +  +I++AL+++  M   G   +
Sbjct: 377 LCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPT 436

Query: 138 AITFHPILSVLTR----GK-------------------------------RMEEAWGLME 162
           A T++  +    +    GK                               R+ EA  +  
Sbjct: 437 AYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFN 496

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            ++E  ++PD   YN ++  Y   G +     +L +M       D    ++L+    +AG
Sbjct: 497 GLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAG 556

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           RV+EA+ +  RM D   S    TY  ++  L + G   +A++ 
Sbjct: 557 RVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIEL 599



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 90/206 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A +  +  L ++ ++ EA  + + + E G    ++T++ ++   ++  +++EA  L
Sbjct: 470 PNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNL 529

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M      PD+   N L+ +    G +     +  +M++ KL     TY+ L+ G  +
Sbjct: 530 LSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGK 589

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV++A  L   M++   S    ++  ++    +      A+K        D K D   
Sbjct: 590 EGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + ++   LI   + N A +   ++ K
Sbjct: 650 YNTVIYGLIKENKVNHAFWFFHQLKK 675



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 1/158 (0%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           L+  LCK K+   A ++ D   +  G   +  +++ ++  L      E+AW L + MK +
Sbjct: 758 LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
             +PD   +N LL  +   G +T    + K+M   +   DA TY+ ++    ++  +++A
Sbjct: 818 GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
                 +V         TY  ++  L ++G   +A++ 
Sbjct: 878 LDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRL 915


>gi|413952228|gb|AFW84877.1| hypothetical protein ZEAMMB73_259977 [Zea mays]
          Length = 453

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 93/201 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++ LI  LCK   +  A+ V+ +M + G     I+F+ +L+      R ++   +
Sbjct: 190 PTIYSHNILISALCKKPDLSAAVDVITLMEKRGITPDIISFNILLNGFYSNDRFDDVEKV 249

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E+MKE  V PD  +YN  L     +G +   + ++++M++E    D+ +Y+ L+ G C 
Sbjct: 250 WEMMKERNVEPDARSYNAKLRGLVSQGRVEDAAALIERMQKEGPKPDSVSYNELIRGYCN 309

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+ EA  +   M+ +G +    T+  ++   +  G    A+        R  ++   L
Sbjct: 310 EGRLNEAKKVYDNMIKNGYAPNRGTFHTLVPHFVEAGELDHALSCCHEIFTRKCRVQCSL 369

Query: 281 FGSLGSKLIGLERFNEANFIL 301
              + + L    R  EA  I+
Sbjct: 370 LQGVVTALFAASRVEEAKRIV 390


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 92/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P      +L+   C  K+I EA+ +VD M   G+  + +TF+ ++  L    +  EA  L
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVAL 208

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M      PDL  Y  ++   C +G+      +L KME+ KL      Y  ++ G C+
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCK 268

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +++A  L + M   G      TY+ ++  L   G ++ A + +     R I  D   
Sbjct: 269 NKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 328

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F +L    +   +  EA  +  EM KR +
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSI 357



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP   +Y TLI   CK K++DE + +   M++ G   + +T+  ++  L +    + A  
Sbjct: 393 FPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQE 452

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    V P++  YN LL   C  G L     V + ++  K+     TY+ ++ G C
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +AG+VE+ + L   +   G       Y  ++    R G   +A
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 66/157 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LC   +  +A R++  M E        TF  ++    +  ++ EA  L
Sbjct: 289 PNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKL 348

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P +  Y+ L+  +C    L     + + M  +    D  +Y  L+ G C+
Sbjct: 349 YDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCK 408

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           A RV+E   L R M   G      TY  ++  L + G
Sbjct: 409 AKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAG 445



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 69/134 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  LCK  K+++A+ V + +       +  T++ ++  + +  ++E+ W L
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V PD+ AYN +++ +C KG+      + K+M+E+    ++  Y+ L+    R
Sbjct: 524 FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 583

Query: 221 AGRVEEAFVLLRRM 234
            G  E +  L++ M
Sbjct: 584 DGDREASAELIKEM 597



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 66/130 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y T+I  LCK K +D+AL +   M   G   + +T+  ++S L    R  +A  L+  M 
Sbjct: 259 YTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E +++PD+  ++ L+ A+  +G L     +  +M +  +     TY +L+ G C   R++
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 226 EAFVLLRRMV 235
           EA  +   MV
Sbjct: 379 EAKQMFEFMV 388



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 3/230 (1%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           N   V+  L   +  L  G P     Y  LI   C+  ++  AL V+  M + G+  + +
Sbjct: 95  NKFDVVISLGEQMQNL--GMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIV 152

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L+     KR+ EA  L++ M      P+   +N L+         +    ++ +M
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 212

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             +    D  TY  +V G C+ G  + AF+LL +M           Y  ++  L +  + 
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHM 272

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             A+        + I+ +   + SL S L    R+++A+ +L +M +R +
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 322



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 102/254 (40%), Gaps = 25/254 (9%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P+   Y  L+N       L+  + +        CF    +++         +++   C+
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYS---------TLIKGFCK 408

Query: 92  TLARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
              R+D+G                  Y TLI  L +    D A  +   M   G   + +
Sbjct: 409 A-KRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIM 467

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T++ +L  L +  ++E+A  + E ++  ++ P +  YN ++   C  G +     +   +
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 527

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG-- 257
             + +  D   Y+ ++ G CR G  EEA  L + M +DG       Y  ++ A LR G  
Sbjct: 528 SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDR 587

Query: 258 -YYAQAVKFVMVCG 270
              A+ +K +  CG
Sbjct: 588 EASAELIKEMRSCG 601



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    K  K+ EA ++ D M +     S +T+  +++      R++EA  +
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M      PD+ +Y+ L+  +C    +     + ++M +  L  +  TY  L+ G  +
Sbjct: 384 FEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQ 443

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           AG  + A  + + MV DG      TY  ++  L + G   +A+
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 486



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI  L    K  EA+ ++D M   G     +T+  +++ L +    + A+ L
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFIL 243

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++ ++ P +  Y  ++   C   ++     + K+ME + +  +  TY +L+   C 
Sbjct: 244 LNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN 303

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LL  M++   +    T++ ++ A ++ G   +A K       R I      
Sbjct: 304 YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVT 363

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL +     +R +EA  + + M
Sbjct: 364 YSSLINGFCMHDRLDEAKQMFEFM 387



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 68/160 (42%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           + FP    +  L+  + K+ K D  + + + M   G   +  T+  +++   R  ++  A
Sbjct: 76  RPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLA 135

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++  M ++   P++   + LL  YC    ++    ++ +M       +  T++ L+ G
Sbjct: 136 LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHG 195

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
                +  EA  L+ RMV  G      TY  V+  L + G
Sbjct: 196 LFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  +CK  K+++   +   ++  G     + ++ ++S   R    EEA  L
Sbjct: 499 PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADAL 558

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + MKE    P+   YN L+ A    G+  A++ ++K+M       DA T   LV     
Sbjct: 559 FKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLH 617

Query: 221 AGRVEEAFV 229
            GR++++F+
Sbjct: 618 DGRLDKSFL 626



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 3/134 (2%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+D+A+ +   M +     S I F  +LS + +  + +    L E M+ + +  +   Y+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYS 120

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C +  L     VL KM +     +  T  +L+ G C + R+ EA  L+ +M   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 238 G---QSVLYSTYAH 248
           G    +V ++T  H
Sbjct: 181 GYQPNTVTFNTLIH 194


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 97/212 (45%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D  FP    Y+ ++ +LCK  +  +A +V D M E G   + +T++ ++  L R  ++ E
Sbjct: 262 DGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNE 321

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  +++ MK   ++P+L  YN L+  +C  G L     + + ++   L     TY+ LV 
Sbjct: 322 ANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVS 381

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G CR G    A  +++ M + G      TY  ++    R     +A++  +      +  
Sbjct: 382 GFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVP 441

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           D   +  L        + NEA+ + K M +++
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 5/188 (2%)

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           LCR L    +G  P    Y+ L+   C+      A ++V  M E G   S +T+  ++  
Sbjct: 360 LCRDLK--SRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             R   ME+A  L   M+E+ + PD+  Y+ L+  +C KG +   S + K M E+    +
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPN 477

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV- 266
              Y+ ++LG C+ G    A  LL+ M +   +   ++Y +++  L +     +A + V 
Sbjct: 478 EVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVE 537

Query: 267 -MVCGGRD 273
            M+  G D
Sbjct: 538 KMIDSGID 545



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 80/171 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  LI  L K     +   + + M E G   +  T++ +++ L +  R ++A+ + + M
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +E  VS ++  YN L+   C +  L   + V+ +M+ + +  +  TY+ L+ G C  G++
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            +A  L R +   G S    TY  ++    R G  + A K V     R IK
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIK 405



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 1/213 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P    Y TLI   CK  +I++A  +   M + G   +  T+  +++ L +    ++ 
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQG 252

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           + + E M+E  V P+L  YN ++   C  G       V  +M E  +  +  TY+ L+ G
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGG 312

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            CR  ++ EA  ++ +M  DG +    TY  ++     +G   +A+        R +   
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              +  L S        + A  ++KEM +R +K
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIK 405



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%)

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           L   +F  ++        +E+++ L+  + E   SP++  Y  L+   C KG +     +
Sbjct: 161 LDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDL 220

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             +M +  L A+ RTY  L+ G  + G  ++ F +  +M +DG      TY  VM  L +
Sbjct: 221 FFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCK 280

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            G    A +       R +  +   + +L   L    + NEAN ++ +M
Sbjct: 281 DGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 91/205 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           ++  LI   C+  +I+++  ++  + E GF  + + +  ++    +   +E+A  L   M
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            ++ +  +   Y  L+      G       + +KM+E+ +  +  TY+ ++   C+ GR 
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT 284

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++AF +   M + G S    TY  ++G L R     +A K V       I  +   + +L
Sbjct: 285 KDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTL 344

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
                G+ +  +A  + +++  R L
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGL 369



 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 1/157 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I    + + ++ ++   + M + GF   +  F+ +L+ +       + W      K
Sbjct: 97  YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENK 156

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
             +V  D+ ++  L+   C  G +  +  +L ++ E     +   Y  L+ G C+ G +E
Sbjct: 157 S-KVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIE 215

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +A  L   M   G      TY  ++  L + G   Q 
Sbjct: 216 KAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQG 252


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 99/217 (45%), Gaps = 5/217 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +GF P    Y TLI  LCK+     A+R++  M +G      + +  I+  L + +++
Sbjct: 156 IGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 215

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A+ L   M    +SP +  YN L+ A C        + +L +M   K+  +   +  +
Sbjct: 216 TQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 275

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGR 272
           V   C+ G+V EA  ++  M+  G      TY  +M          +AVK    MVC G 
Sbjct: 276 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG- 334

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               D   + +L +    ++R  +A ++ +EM +++L
Sbjct: 335 -FAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL 370



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 113/252 (44%), Gaps = 2/252 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  ++++   +R +     L ++        +  T+N + +   +L     +  
Sbjct: 196 QPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTA 255

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  +   K  P    + T++  LCK  K+ EA  VVD+M + G   + +T++ ++    
Sbjct: 256 LLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHC 315

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               M+EA  + + M     +PD+ +Y+ L+  YC    +     + ++M  ++L  +  
Sbjct: 316 LRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTV 375

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C  GR+++A  L   MV  GQ   + +Y  ++  L +     +A+  +   
Sbjct: 376 TYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAI 435

Query: 270 GGRDIKLDTELF 281
            G ++  D +++
Sbjct: 436 EGSNMDPDIQIY 447



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 1/169 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P   +Y TLI   CK+++I++A+ + + M       + +T+  ++  L    R+++
Sbjct: 333 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQD 392

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L   M      PD  +Y  LL   C    L     +LK +E   +  D + Y  ++ 
Sbjct: 393 AIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVID 452

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           G CRAG +E A  L   +   G      TY  ++  L + G  A+A K 
Sbjct: 453 GMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKL 501



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 5/185 (2%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           N +  I   E ++ +  ++CR      +  P    Y TL+  LC + ++ +A+ +   M 
Sbjct: 347 NGYCKIQRIEKAMYLFEEMCR-----KELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMV 401

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G     +++  +L  L + +R++EA  L++ ++   + PD+  Y  ++   C  G L 
Sbjct: 402 TRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELE 461

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
           A   +   +  + L  +  TY  ++ G C+ G + EA  L   M   G S    TY  + 
Sbjct: 462 AARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLIT 521

Query: 251 GALLR 255
              LR
Sbjct: 522 RGFLR 526



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/278 (19%), Positives = 118/278 (42%), Gaps = 2/278 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P  A ++ L+     E  +  V +L +K   +       T+  + N    +   S   R
Sbjct: 126 QPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIR 185

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  +++G   P    Y ++I  LCK +++ +A  +   M   G   S  T++ ++  L 
Sbjct: 186 LLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALC 245

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
                +    L+  M   ++ P++  ++ ++ A C +G +     V+  M +  +  +  
Sbjct: 246 NLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVV 305

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+AL+ G C    ++EA  +   MV  G +    +Y+ ++    ++    +A+      
Sbjct: 306 TYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEM 365

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +++  +T  + +L   L  + R  +A  +  EM  R
Sbjct: 366 CRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTR 403



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 89/210 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI   C L+++  A  V+  + + G   +  TF+ ++  L    ++ E   L
Sbjct: 92  PNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHL 151

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P++  Y  L+   C  G+ +A   +L+ ME+     D   Y +++   C+
Sbjct: 152 FDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 211

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +V +AF L   M+  G S    TY  ++ AL  L  +      +       I  +  +
Sbjct: 212 DRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 271

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F ++   L    +  EA+ ++  M KR ++
Sbjct: 272 FSTVVDALCKEGKVMEAHDVVDMMIKRGVE 301



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 84/202 (41%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
            S+++T   +      +D+AL   + M       S   F  +L  +T+ K       L  
Sbjct: 24  SSSHNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSH 83

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M    + P++   N L+ ++C    L     VL K+ +     +  T++ L+ G C  G
Sbjct: 84  QMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEG 143

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           ++ E   L  +M+ +G      TY  ++  L ++G  + A++ +      + + D  ++ 
Sbjct: 144 KIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYT 203

Query: 283 SLGSKLIGLERFNEANFILKEM 304
           S+   L    +  +A  +  EM
Sbjct: 204 SIIDSLCKDRQVTQAFNLFSEM 225



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 92/240 (38%), Gaps = 9/240 (3%)

Query: 74  NFITNTENSL-------SVLSDLCRTLARLDKGFPRKSAYD--TLIGRLCKLKKIDEALR 124
           +F++++ N+        + L D   +  R+    P  S  D   L+  + K+K     L 
Sbjct: 21  HFLSSSHNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLS 80

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +   M   G   +  T + +++     +R+  A+ ++  + ++   P++  +N L+   C
Sbjct: 81  LSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLC 140

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            +G +     +  KM  E    +  TY  L+ G C+ G    A  LLR M          
Sbjct: 141 VEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVV 200

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            Y  ++ +L +     QA         + I      + SL   L  L  +     +L EM
Sbjct: 201 VYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEM 260



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 22/225 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+N     + +E   YL  +  R            I NT    +++  LC  
Sbjct: 337 PDVVSYSTLINGYCKIQRIEKAMYLFEEMCRK---------ELIPNTVTYSTLMHGLCH- 386

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           + RL                P   +Y  L+  LCK +++DEA+ ++  +           
Sbjct: 387 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 446

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  ++  + R   +E A  L   +    + P++  Y  ++   C +G L   S +  +M+
Sbjct: 447 YTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMK 506

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            +    +  TY+ +  G  R         LL+ M+  G S   ST
Sbjct: 507 RKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVST 551


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRMEEAWG 159
           P    Y TL+    +  K++ A+ + + M   G   +  TF+  + +   RGK  E    
Sbjct: 382 PDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTE---- 437

Query: 160 LMEVMKEIRV---SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           +M++  EI V   SPD+  +N LL  +   G  +  SGV K+M+      +  T++ L+ 
Sbjct: 438 MMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLIS 497

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
              R G  E+A  + RRM+D G +   STY  V+ AL R G + Q+ K
Sbjct: 498 AYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEK 545



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 115/277 (41%), Gaps = 13/277 (4%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLA--- 94
           Y  L++A  +         +  K   D C  T  T+N I N    +    +   +L    
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKI-DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           + D   P    Y+TLI   CK   +  EA +V + M   GF    +T++ +L V  +  R
Sbjct: 271 KSDGIAPDAYTYNTLI-TCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHR 329

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
            +EA  ++  M     SP +  YN L++AY   G L     +  +M E+    D  TY  
Sbjct: 330 PKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF---VMVCG 270
           L+ G  RAG+VE A  +   M + G      T+   +      G + + +K    + VCG
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCG 449

Query: 271 -GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
              DI     L    G    G++  +E + + KEM +
Sbjct: 450 LSPDIVTWNTLLAVFGQN--GMD--SEVSGVFKEMKR 482



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 90/208 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           PR     TL+    K   + EA R    + E GF     T + ++S+  R + + +A G+
Sbjct: 592 PRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGV 651

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MKE   +P +  YN L+  +    +   +  +L+++  + +  D  +Y+ ++   CR
Sbjct: 652 LDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCR 711

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R+ +A  +   M + G      TY   +G+      + +A+  V        + +   
Sbjct: 712 NTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNT 771

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + S+      L R +EA   ++++   D
Sbjct: 772 YNSIVDGYCKLNRKDEAKLFVEDLRNLD 799



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +I  L K  ++  A  + + + E GF L   ++  ++S      R  EA  + + M+E  
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238

Query: 169 VSPDLTAYNYLLTAYCFKGN-LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
             P L  YN +L  +   G      + +++KM+ + +  DA TY+ L+    R    +EA
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298

Query: 228 FVLLRRMVDDGQSVLYSTY 246
             +   M   G S    TY
Sbjct: 299 AQVFEEMKAAGFSYDKVTY 317



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 87/213 (40%), Gaps = 16/213 (7%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---------NTENSL 83
           P+   Y+ L++A   +  L+    L N+ A        + F + T           E+++
Sbjct: 347 PSIVTYNSLISAYARDGMLDEAMELKNQMAEKG--TKPDVFTYTTLLSGFERAGKVESAM 404

Query: 84  SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           S+  ++     +     P    ++  I       K  E +++ D +   G     +T++ 
Sbjct: 405 SIFEEMRNAGCK-----PNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNT 459

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +L+V  +     E  G+ + MK     P+   +N L++AY   G+      V ++M +  
Sbjct: 460 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG 519

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           +  D  TY+ ++    R G  E++  +L  M D
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMED 552



 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P +  ++TLI    +    ++A+ V   M + G      T++ +L+ L RG   E++
Sbjct: 484 GFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQS 543

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAY 183
             ++  M++ R  P+   Y  LL AY
Sbjct: 544 EKVLAEMEDGRCKPNELTYCSLLHAY 569



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 2/167 (1%)

Query: 91  RTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + LA ++ G   P +  Y +L+      K+I     + + +  G     A+    ++ V 
Sbjct: 545 KVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVC 604

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           ++   + EA      +KE   SPD+T  N +++ Y  +  +   +GVL  M+E       
Sbjct: 605 SKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSM 664

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            TY++L+    R+    ++  +LR ++  G      +Y  V+ A  R
Sbjct: 665 ATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCR 711


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 99/217 (45%), Gaps = 5/217 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +GF P    Y TLI  LCK+     A+R++  M +G      + +  I+  L + +++
Sbjct: 165 IGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 224

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A+ L   M    +SP +  YN L+ A C        + +L +M   K+  +   +  +
Sbjct: 225 TQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 284

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGR 272
           V   C+ G+V EA  ++  M+  G      TY  +M          +AVK    MVC G 
Sbjct: 285 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG- 343

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               D   + +L +    ++R  +A ++ +EM +++L
Sbjct: 344 -FAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL 379



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 113/252 (44%), Gaps = 2/252 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  ++++   +R +     L ++        +  T+N + +   +L     +  
Sbjct: 205 QPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTA 264

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  +   K  P    + T++  LCK  K+ EA  VVD+M + G   + +T++ ++    
Sbjct: 265 LLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHC 324

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               M+EA  + + M     +PD+ +Y+ L+  YC    +     + ++M  ++L  +  
Sbjct: 325 LRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTV 384

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C  GR+++A  L   MV  GQ   + +Y  ++  L +     +A+  +   
Sbjct: 385 TYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAI 444

Query: 270 GGRDIKLDTELF 281
            G ++  D +++
Sbjct: 445 EGSNMDPDIQIY 456



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 1/169 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P   +Y TLI   CK+++I++A+ + + M       + +T+  ++  L    R+++
Sbjct: 342 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQD 401

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L   M      PD  +Y  LL   C    L     +LK +E   +  D + Y  ++ 
Sbjct: 402 AIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVID 461

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           G CRAG +E A  L   +   G      TY  ++  L + G  A+A K 
Sbjct: 462 GMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKL 510



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 5/185 (2%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           N +  I   E ++ +  ++CR      +  P    Y TL+  LC + ++ +A+ +   M 
Sbjct: 356 NGYCKIQRIEKAMYLFEEMCR-----KELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMV 410

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G     +++  +L  L + +R++EA  L++ ++   + PD+  Y  ++   C  G L 
Sbjct: 411 TRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELE 470

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
           A   +   +  + L  +  TY  ++ G C+ G + EA  L   M   G S    TY  + 
Sbjct: 471 AARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLIT 530

Query: 251 GALLR 255
              LR
Sbjct: 531 RGFLR 535



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/278 (19%), Positives = 118/278 (42%), Gaps = 2/278 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P  A ++ L+     E  +  V +L +K   +       T+  + N    +   S   R
Sbjct: 135 QPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIR 194

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  +++G   P    Y ++I  LCK +++ +A  +   M   G   S  T++ ++  L 
Sbjct: 195 LLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALC 254

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
                +    L+  M   ++ P++  ++ ++ A C +G +     V+  M +  +  +  
Sbjct: 255 NLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVV 314

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+AL+ G C    ++EA  +   MV  G +    +Y+ ++    ++    +A+      
Sbjct: 315 TYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEM 374

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +++  +T  + +L   L  + R  +A  +  EM  R
Sbjct: 375 CRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTR 412



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 89/210 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI   C L+++  A  V+  + + G   +  TF+ ++  L    ++ E   L
Sbjct: 101 PNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHL 160

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P++  Y  L+   C  G+ +A   +L+ ME+     D   Y +++   C+
Sbjct: 161 FDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 220

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +V +AF L   M+  G S    TY  ++ AL  L  +      +       I  +  +
Sbjct: 221 DRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 280

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F ++   L    +  EA+ ++  M KR ++
Sbjct: 281 FSTVVDALCKEGKVMEAHDVVDMMIKRGVE 310



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 84/202 (41%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
            S+++T   +      +D+AL   + M       S   F  +L  +T+ K       L  
Sbjct: 33  SSSHNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSH 92

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M    + P++   N L+ ++C    L     VL K+ +     +  T++ L+ G C  G
Sbjct: 93  QMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEG 152

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           ++ E   L  +M+ +G      TY  ++  L ++G  + A++ +      + + D  ++ 
Sbjct: 153 KIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYT 212

Query: 283 SLGSKLIGLERFNEANFILKEM 304
           S+   L    +  +A  +  EM
Sbjct: 213 SIIDSLCKDRQVTQAFNLFSEM 234



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 92/240 (38%), Gaps = 9/240 (3%)

Query: 74  NFITNTENSL-------SVLSDLCRTLARLDKGFPRKSAYD--TLIGRLCKLKKIDEALR 124
           +F++++ N+        + L D   +  R+    P  S  D   L+  + K+K     L 
Sbjct: 30  HFLSSSHNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLS 89

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +   M   G   +  T + +++     +R+  A+ ++  + ++   P++  +N L+   C
Sbjct: 90  LSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLC 149

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            +G +     +  KM  E    +  TY  L+ G C+ G    A  LLR M          
Sbjct: 150 VEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVV 209

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            Y  ++ +L +     QA         + I      + SL   L  L  +     +L EM
Sbjct: 210 VYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEM 269



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 22/225 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+N     + +E   YL  +  R            I NT    +++  LC  
Sbjct: 346 PDVVSYSTLINGYCKIQRIEKAMYLFEEMCRK---------ELIPNTVTYSTLMHGLCH- 395

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           + RL                P   +Y  L+  LCK +++DEA+ ++  +           
Sbjct: 396 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 455

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  ++  + R   +E A  L   +    + P++  Y  ++   C +G L   S +  +M+
Sbjct: 456 YTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMK 515

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            +    +  TY+ +  G  R         LL+ M+  G S   ST
Sbjct: 516 RKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVST 560


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 2/240 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T++ + N     S LS     LA++ K G+ P     ++L+   C   +I +A+ +V  M
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E G+   + TF+ ++  L R  R  EA  L++ M      PDL  Y  ++   C +G++
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +LKKME+ K+      Y+ ++   C    V +A  L   M + G      TY  +
Sbjct: 238 DLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 297

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   G ++ A + +     R I  +   F +L    +   +  EA  +  EM KR +
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK K++DE + +   M++ G   + +T+  ++    + +  + A  
Sbjct: 393 FPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQI 452

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    V PD+  Y+ LL   C  G +     V + ++  K+  D  TY+ ++ G C
Sbjct: 453 VFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMC 512

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +AG+VE+ + L   +   G      TY  +M    R G   +A
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 555



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 9/236 (3%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           LV R   K G  PD  T   Y  +VN      D++    LL K  +         +N I 
Sbjct: 208 LVDRMVVK-GCQPDLVT---YGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTII 263

Query: 78  NTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           +   +   ++D       +D KG  P    Y++LI  LC   +  +A R++  M E    
Sbjct: 264 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 323

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +TF  ++    +  ++ EA  L + M +  + PD+  Y+ L+  +C    L     +
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD---GQSVLYSTYAH 248
            + M  +    +  TY+ L+ G C+A RV+E   L R M      G +V Y+T  H
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIH 439



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 99/208 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI  L +  +  EA+ +VD M   G     +T+  +++ L +   ++ A  L
Sbjct: 184 PDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSL 243

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++ ++ P +  YN ++ A C   N+     +  +M+ + +  +  TY++L+   C 
Sbjct: 244 LKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 303

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LL  M++   +    T++ ++ A ++ G   +A K       R I  D   
Sbjct: 304 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 363

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + SL +     +R +EA  + + M  +D
Sbjct: 364 YSSLINGFCMHDRLDEAKHMFELMISKD 391



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 110/262 (41%), Gaps = 13/262 (4%)

Query: 49  RDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDT 108
           RD   VRY      R    N  N        ++++++  D+ ++     + FP    +  
Sbjct: 40  RDFSGVRY----DYRKISINRLNDLKL----DDAVNLFGDMVKS-----RPFPSIVEFSK 86

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  + K+ K D  + + + M   G   +  T+  +++   R  ++  A  ++  M ++ 
Sbjct: 87  LLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLG 146

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             PD+   N LL  +C    ++    ++ +M E     D+ T++ L+ G  R  R  EA 
Sbjct: 147 YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAV 206

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            L+ RMV  G      TY  V+  L + G    A+  +       I+    ++ ++   L
Sbjct: 207 ALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDAL 266

Query: 289 IGLERFNEANFILKEMNKRDLK 310
              +  N+A  +  EM+ + ++
Sbjct: 267 CNYKNVNDALNLFTEMDNKGIR 288



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 22/247 (8%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  L+N       L+  +++        CF    T+N         +++   C+
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN---------TLIKGFCK 408

Query: 92  TLARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
              R+D+G                  Y TLI    + ++ D A  V   M   G     +
Sbjct: 409 A-KRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIM 467

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +L  L    ++E A  + E ++  ++ PD+  YN ++   C  G +     +   +
Sbjct: 468 TYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 527

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             + +  +  TY  ++ G CR G  EEA  L R M ++G      TY  ++ A LR G  
Sbjct: 528 SLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDK 587

Query: 260 AQAVKFV 266
           A + + +
Sbjct: 588 AASAELI 594



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 2/234 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ +++A  + +++     L  +           T+N +     +    SD  R
Sbjct: 253 EPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+ +   K  P    +  LI    K  K+ EA ++ D M +        T+  +++   
Sbjct: 313 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 372

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              R++EA  + E+M      P++  YN L+  +C    +     + ++M +  L  +  
Sbjct: 373 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           TY  L+ G  +A   + A ++ ++MV DG      TY+ ++  L   G    A+
Sbjct: 433 TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETAL 486



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 62/138 (44%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y  L+  LC   K++ AL V + +          T++ ++  + +  ++E+
Sbjct: 460 DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
            W L   +    V P++  Y  +++ +C KG       + ++M+EE    D+ TY+ L+ 
Sbjct: 520 GWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIR 579

Query: 217 GACRAGRVEEAFVLLRRM 234
              R G    +  L+R M
Sbjct: 580 AHLRDGDKAASAELIREM 597



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 1/129 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  +CK  K+++   +   ++  G   + +T+  ++S   R    EEA  L
Sbjct: 499 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADAL 558

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MKE    PD   YN L+ A+   G+  A++ ++++M   +   DA T   LV     
Sbjct: 559 FREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI-GLVTNMLH 617

Query: 221 AGRVEEAFV 229
            GR++++F+
Sbjct: 618 DGRLDKSFL 626


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 5/233 (2%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           T  +L VL D+      ++  +P    Y++L+    K  K ++A  ++  +   G   +A
Sbjct: 178 TVRALEVLEDMA-----IEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNA 232

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           IT++ +L  L      +E   ++ +MK+    P +  YN L+   C  G +        +
Sbjct: 233 ITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQ 292

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M  E    D  TY+ L+   C+ G V+EA  +   + D   S    TY  V+  L R GY
Sbjct: 293 MVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGY 352

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
             +A+K       + I  D     SL      +++  +A  IL+EM KRD ++
Sbjct: 353 MDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRI 405



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 129/306 (42%), Gaps = 7/306 (2%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPD-EPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           +++R L       Q+V   R   + G  P   P +   + +    G  R LE    +L  
Sbjct: 132 TIIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALE----VLED 187

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKK 118
            A + C+    T+N + N  +      D    +   L  G  P    Y++L+  LC    
Sbjct: 188 MAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGL 247

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
            DE   ++ IM +     + +T++ +++ L +   +E A      M     SPD+  YN 
Sbjct: 248 WDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNT 307

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           LLTA C +G +     V   + +        TY+ ++ G  R G ++EA  L  +M++ G
Sbjct: 308 LLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKG 367

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            +    T+  ++     +     AV+ +   G RD ++++  +  + + L   +R + A 
Sbjct: 368 IAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAI 427

Query: 299 FILKEM 304
            +L+ M
Sbjct: 428 QVLEMM 433



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 8/209 (3%)

Query: 32  EPTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD 88
           EP +  Y+ L+++    G   +++ +  ++ K +      T  T+N + N      ++  
Sbjct: 229 EPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHP---PTVVTYNILINGLCKCGLVER 285

Query: 89  LCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
                 ++  +   P    Y+TL+  LCK   +DEAL+V  ++++       IT++ ++ 
Sbjct: 286 AINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVID 345

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            LTR   M+EA  L   M E  ++PD   +  L+  +C+   +     +L++M +     
Sbjct: 346 GLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRI 405

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMV 235
           ++  Y  ++ G CR  RV+ A  +L  M+
Sbjct: 406 NSSAYRLVINGLCRNKRVDIAIQVLEMMI 434



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T + IL  L +   + EA  L+++M  +   P+ T    L+      G +   S VLK M
Sbjct: 24  TNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTM 83

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
               L  D  TY+ +V G C+  ++  A  LL  M   G      TY  ++ +L   G +
Sbjct: 84  VMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKF 143

Query: 260 AQAVKF 265
            QAV+F
Sbjct: 144 DQAVEF 149



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 61/136 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  L +   +DEAL++ + M E G     IT   ++       ++E+A  +
Sbjct: 335 PGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEI 394

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +     + +AY  ++   C    +     VL+ M   +   D   Y  L+     
Sbjct: 395 LREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVAD 454

Query: 221 AGRVEEAFVLLRRMVD 236
           AG VEEA  L +++++
Sbjct: 455 AGMVEEADELHQKLIE 470



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 59/126 (46%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + ++  LCK   + EA +++DIM+      ++     ++  L R  R+E A  +++ M  
Sbjct: 26  NEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTMVM 85

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + PD+  YN ++  +C +  L +   +L+ M       D  TY+ ++      G+ ++
Sbjct: 86  SGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQ 145

Query: 227 AFVLLR 232
           A    R
Sbjct: 146 AVEFWR 151



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 36/222 (16%)

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           SL   + L   ++R+++  P  +    LI  L ++ +I+ A RV+  M   G     IT+
Sbjct: 37  SLMEATKLIDIMSRVNQ-IPNSTCSTNLIRGLVRIGRIERASRVLKTMVMSGLVPDVITY 95

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY-----------CFKGNL- 189
           + ++    + +++  A  L+E M      PD+  YN ++ +             ++G L 
Sbjct: 96  NMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLR 155

Query: 190 -----------------------TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
                                       VL+ M  E    D  TY++LV  A + G+ E+
Sbjct: 156 RGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYED 215

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           A +++  ++  G      TY  ++ +L   G + +  + + +
Sbjct: 216 AALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAI 257



 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/110 (20%), Positives = 57/110 (51%), Gaps = 1/110 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++KG  P    + +L+   C + ++++A+ ++  M +    +++  +  +++ L R KR+
Sbjct: 364 IEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRV 423

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           + A  ++E+M   R  PD   Y+ L+ +    G +     + +K+ E K+
Sbjct: 424 DIAIQVLEMMISGRYKPDEEIYSTLIKSVADAGMVEEADELHQKLIERKV 473


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M +     + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A K+       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 17/216 (7%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP 101
           + A+G + D+ T   L+N   ++   + AN   F    +N L                 P
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANEL-FDEMLDNXL----------------VP 239

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
               + TLI   CK  ++D A+ +   M         IT++ ++  L +   +++A  L+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           + M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL+ G C+ 
Sbjct: 300 DEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQE 359

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 86/190 (45%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + +     S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDD 237
             L+ G C+  ++++A  L   M+D+
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDN 235


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 2/219 (0%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
            PT   Y  L++       LE    L  + +   C      FN + N    +      C+ 
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 93   LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              R+ ++G  P   +Y  L+  LC   ++DEAL   + +   G     I ++ I++ L +
Sbjct: 951  FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGK 1010

Query: 151  GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +RMEEA  L   M+   + PDL  YN L+      G +     + ++++   L  D  T
Sbjct: 1011 SQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFT 1070

Query: 211  YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            Y+AL+ G   +   E A+ + + M+ DG +    TYA +
Sbjct: 1071 YNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 2/254 (0%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
            PT A Y+ L+         E    L        C   A TFN +         +++L   
Sbjct: 786  PTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 93   LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
               +   +  P    Y+ +I  L K   +D+AL     +    F  +  T+ P++  L +
Sbjct: 846  YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905

Query: 151  GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              R+EEA  L E M +    P+   +N L+  Y   G+      + K+M  E +  D ++
Sbjct: 906  VGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKS 965

Query: 211  YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
            Y  LV   C AGRV+EA      +   G    +  Y  ++  L +     +A+       
Sbjct: 966  YTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMR 1025

Query: 271  GRDIKLDTELFGSL 284
             R I  D   + SL
Sbjct: 1026 NRGIVPDLYTYNSL 1039



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 4/167 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++    K+ ++DEA+ ++  M   G     I  + ++  L +  R++EAW +
Sbjct: 505 PDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQM 564

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + MK++++SP +  YN LL+    +G +     + + M  +K   +  +++ L+   C+
Sbjct: 565 FDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCK 624

Query: 221 AGRVEEAFVLLRRM--VDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
              VE A  +  +M  +D    VL  TY  V+  L++      A  F
Sbjct: 625 NDEVELALKMFSKMTVMDCKPDVL--TYNTVIYGLIKENKVNHAFWF 669



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 76  ITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           +   + ++++LS++ R         P     ++LI  L K  ++DEA ++ D M +    
Sbjct: 520 VGQVDEAVNLLSEMIRNGCE-----PDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS 574

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +T++ +LS L +  R+++A  L E M   + SP+  ++N LL  +C    +     +
Sbjct: 575 PTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKM 634

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             KM       D  TY+ ++ G  +  +V  AF    ++
Sbjct: 635 FSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL 673



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    +  L+  LCK +  DEA    D+M + G   +  T++ ++  L R  R+E+
Sbjct: 361 DGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIED 420

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCF--KGNLTATSGVLKKMEEEKLGADARTYDAL 214
           A  L++ M+ + V P  TAY Y+     F   G         +KM+ + +  +    +A 
Sbjct: 421 ALKLLDTMESVGVQP--TAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNAS 478

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +      GR+ EA  +   + ++G +    TY  +M    ++G   +AV  +        
Sbjct: 479 LYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGC 538

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           + D  +  SL   L    R +EA  +   M  +D+K+
Sbjct: 539 EPDVIVVNSLIDSLYKAGRVDEAWQMFDRM--KDMKL 573



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 107/283 (37%), Gaps = 43/283 (15%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F K  A   +P    Y  L++      DL+T +   ++   D       TF  + +    
Sbjct: 320 FVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDV--- 376

Query: 83  LSVLSDLCRTLARLD----KG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           L    D     A  D    +G  P    Y+TLI  L +  +I++AL+++D M   G   +
Sbjct: 377 LCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPT 436

Query: 138 AITF-----------------------------------HPILSVLTRGKRMEEAWGLME 162
           A T+                                   +  L  L    R+ EA  +  
Sbjct: 437 AYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFN 496

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            ++E  ++PD   YN ++  Y   G +     +L +M       D    ++L+    +AG
Sbjct: 497 GLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAG 556

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           RV+EA+ +  RM D   S    TY  ++  L + G   +A++ 
Sbjct: 557 RVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIEL 599



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 8/232 (3%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALR 124
            +T  T NF+         + D+      + K   R+    Y T+   L     + +   
Sbjct: 119 LHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTT 178

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           V++ M + GF L+A +++ ++ +L +     EA  +   M    + P L  Y+ L+ A  
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALG 238

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            K +      +LK+ME+  L  +  T+   +    RAG+++EA+ + RRM D+G      
Sbjct: 239 KKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLV 298

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
           TY  ++ AL   G    A +  +       K D  ++ +L      L++FN+
Sbjct: 299 TYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITL------LDKFND 344



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 67/166 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +   I  L +  KIDEA  +   M + G G   +T+  ++  L    ++E A  L
Sbjct: 260 PNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKEL 319

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK     PD   Y  LL  +   G+L        +ME +    D  T+  LV   C+
Sbjct: 320 FVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCK 379

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           A   +EAF     M   G      TY  ++  LLR G    A+K +
Sbjct: 380 ARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL 425



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 89/206 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A +  +  L ++ ++ EA  + + + E G    ++T++ ++   ++  +++EA  L
Sbjct: 470 PNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNL 529

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M      PD+   N L+ +    G +     +  +M++ KL     TY+ L+ G  +
Sbjct: 530 LSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGK 589

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV++A  L   M+    S    ++  ++    +      A+K        D K D   
Sbjct: 590 EGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + ++   LI   + N A +   ++ K
Sbjct: 650 YNTVIYGLIKENKVNHAFWFFHQLKK 675



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 1/158 (0%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           L+  LCK K+   A ++ D   +  G   +  +++ ++  L      E+AW L + MK +
Sbjct: 758 LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
             +PD   +N LL  +   G +T    + K+M   +   DA TY+ ++    ++  +++A
Sbjct: 818 GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
                 +V         TY  ++  L ++G   +A++ 
Sbjct: 878 LDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRL 915


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 108/221 (48%), Gaps = 2/221 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCKL+ + +A  +V  M + G   S  TF+ ++       ++E+ + +
Sbjct: 224 PDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTV 283

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  +  D+ ++  ++ A+C  G +     +L  M  + +  +A+ Y++++     
Sbjct: 284 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 343

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +G  E+AF+L+ +M + G S    TY  ++  L R     +A + +     + ++ D   
Sbjct: 344 SGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVS 403

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
           + ++ S        ++A  +L+EMNK  ++    LR Y+ +
Sbjct: 404 YNTIISACCNKGDTDKALELLQEMNKYGIRP--TLRTYHTL 442



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 123/280 (43%), Gaps = 2/280 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT+  Y+ L+N     RDL     +  +           T+N + N    L +++     
Sbjct: 189 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL 248

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +  ++K    P    ++TLI       ++++   V+  M + G     I+F  ++    +
Sbjct: 249 VMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCK 308

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++ EA  +++ M    V+P+   YN ++ AY   G+      +++KM+   + A   T
Sbjct: 309 NGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVT 368

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ L+ G CR+ +++EA  L+  + + G      +Y  ++ A    G   +A++ +    
Sbjct: 369 YNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMN 428

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              I+     + +L S L    R ++   + ++M  ++++
Sbjct: 429 KYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVE 468



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I    +    ++A  +V+ M   G   S +T++ +L  L R  +++EA  L
Sbjct: 329 PNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEEL 388

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  ++   + PD+ +YN +++A C KG+      +L++M +  +    RTY  LV     
Sbjct: 389 IYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALAS 448

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           AGRV +   L ++M+        S Y  ++ A +R
Sbjct: 449 AGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVR 483



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 118/259 (45%), Gaps = 10/259 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT----FNFITNTENSLSVLS 87
           +P    Y+ L++       ++  R L+++ A    F    T    F+ +T T  S ++LS
Sbjct: 83  KPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLS 142

Query: 88  DLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
               +L    KG     AY    L+  LCK  K+ +A +V++++   G   + + ++ ++
Sbjct: 143 LFAESLK---KGV-MLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLI 198

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           +   + + +  A+ + E MK   + PD   YN L+   C    +T    ++ +ME+  + 
Sbjct: 199 NGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVD 258

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
               T++ L+     AG++E+ F +L  M   G      ++  V+ A  + G   +AV  
Sbjct: 259 PSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAI 318

Query: 266 VMVCGGRDIKLDTELFGSL 284
           +     +D+  + +++ S+
Sbjct: 319 LDDMIYKDVAPNAQVYNSI 337



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 1/223 (0%)

Query: 89  LCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           + R + R +   P  + +Y+ +I  L +  K  +AL+V D M + G   + IT++ ++  
Sbjct: 1   MVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDG 60

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             +G  +E  + L + M      P++  YN LL+  C  G +  T  ++ +M    +  D
Sbjct: 61  HVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPD 120

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY  L  G  R G       L    +  G  +   T + ++  L + G  A+A + + 
Sbjct: 121 GFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLE 180

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +     +   T ++ +L +    +     A  I ++M  R ++
Sbjct: 181 MLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIR 223



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 28/292 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ +++      DLE        R RD   +     N +T       +LS LCR 
Sbjct: 49  PNWITYNTMIDGHVKGGDLEA-----GFRLRDQMLHDGPKPNIVTYN----VLLSGLCRA 99

Query: 93  LARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG---GFGLS 137
             R+D+             FP    Y  L      L +  E+  ++ + AE    G  L 
Sbjct: 100 -GRMDETRVLMDEMASHSMFPDGFTYSILFD---GLTRTGESRTMLSLFAESLKKGVMLG 155

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           A T   +L+ L +  ++ +A  ++E++    + P    YN L+  YC   +L     + +
Sbjct: 156 AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFE 215

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M+   +  D  TY+AL+ G C+   V +A  L+  M   G      T+  ++ A    G
Sbjct: 216 QMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAG 275

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              +    +     + IK D   FGS+        +  EA  IL +M  +D+
Sbjct: 276 QLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 327



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 35/214 (16%)

Query: 19  VTRSFTKSGAFPDE-------------PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC 65
           V ++F K+G  P+              P +  Y+ +++A     D E    L+ K     
Sbjct: 302 VVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG 361

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRL 113
              +  T+N +         L  LCR+ +++D+              P   +Y+T+I   
Sbjct: 362 VSASIVTYNLL---------LKGLCRS-SQIDEAEELIYTLRNQGLRPDVVSYNTIISAC 411

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           C     D+AL ++  M + G   +  T+H ++S L    R+ +   L + M    V P  
Sbjct: 412 CNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSS 471

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           + Y  ++ AY    N +  + + K+M E+ +  D
Sbjct: 472 SIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 505


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 13/208 (6%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLC 114
           FN         N  N  +++  LC+ L R+D               P    +++L+  LC
Sbjct: 397 FNKMRQHGLSPNVVNYGALIDALCK-LGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLC 455

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
            + K + A  +V  M + G   +A+ F+ ++  L    R+ E   L+++M+ + V PD  
Sbjct: 456 TVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAF 515

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +Y  L++ YC  G       V   M    L     TY+ L+ G C A R+++A+ L R M
Sbjct: 516 SYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREM 575

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +  G +    TY  ++  L +   +++A
Sbjct: 576 LRKGVTPGVVTYNTILHGLFQTKRFSEA 603



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 4/210 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           A + L+  LC  K++ EA+ V+   M E G     +++  +L  L   KR EEA  L+ +
Sbjct: 127 AINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHM 186

Query: 164 MKEI---RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M +    R  P++ +Y+ ++  +  +G +     +  +M +  +  D  TY  ++ G C+
Sbjct: 187 MADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCK 246

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A   + A  + ++M+D+G      TY  ++   L +G + + V+ +     R +K D   
Sbjct: 247 AQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYT 306

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +GSL + L    R  EA F    M ++ +K
Sbjct: 307 YGSLLNYLCKNGRCREARFFFDSMIRKGIK 336



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 1/187 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    ++TLI  LC + ++ E  R++D+M   G    A ++ P++S      R 
Sbjct: 471 LDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRT 530

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  + + M  I +SP    YN LL  YC    +     + ++M  + +     TY+ +
Sbjct: 531 DEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTI 590

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G  +  R  EA  L   M++ G      TY  ++  L +     +A K       + +
Sbjct: 591 LHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGL 650

Query: 275 KLDTELF 281
           +L+   F
Sbjct: 651 QLNIITF 657



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 85/204 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+  LCK  +  EA    D M   G      T+  ++        + E    
Sbjct: 302 PDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSF 361

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M E  +SPD   +N   +AY   G +     +  KM +  L  +   Y AL+   C+
Sbjct: 362 LDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCK 421

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV++A V   +M+++G +     +  ++  L  +  + +A + V     + I  +   
Sbjct: 422 LGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVF 481

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F +L   L  + R  E   ++  M
Sbjct: 482 FNTLICNLCNVGRVMEGRRLIDLM 505



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 68/157 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++  LCK   +DEA ++   +   G  L+ ITF  ++  L +G R E+A  L   + 
Sbjct: 622 YNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIP 681

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y  +      +G+L     +   ME+     +++  +ALV      G + 
Sbjct: 682 ANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDIS 741

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            A   L ++ +   SV  ST + +M       Y   A
Sbjct: 742 RAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHA 778



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 81/209 (38%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  +I       ++D+   +   M + G     +T+  ++  L + +  + A G+
Sbjct: 197 PNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGV 256

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +    P+   YN L+  Y   G       +L++M    L  D  TY +L+   C+
Sbjct: 257 FQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCK 316

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  EA      M+  G     STY  ++      G  ++   F+ +     +  D  +
Sbjct: 317 NGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHI 376

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F    S        ++A  I  +M +  L
Sbjct: 377 FNIFFSAYAKCGMIDKAMDIFNKMRQHGL 405



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 84/211 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+TL+   C   +ID+A  +   M   G     +T++ IL  L + KR  EA  L
Sbjct: 547 PTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKEL 606

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M       D+  YN +L   C    +     + + +  + L  +  T+  ++    +
Sbjct: 607 YLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLK 666

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR E+A  L   +  +G      TY  V   L+  G   +               ++++
Sbjct: 667 GGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQM 726

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
             +L  +L+     + A   L ++++R+  +
Sbjct: 727 LNALVRRLLHRGDISRAGAYLSKLDERNFSV 757


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 2/203 (0%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y+ L+     E  ++    L  +  R  C     T+N I +       + ++ R  A + 
Sbjct: 776 YNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMH 835

Query: 98  -KGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
            KG+      Y+T+I  L K K++++A+ +   +   GF  +  T+ P+L  L +  +M 
Sbjct: 836 RKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMV 895

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  L   M E    P+ T YN LL  +   GN      + +KM E+ +  D ++Y  L+
Sbjct: 896 DAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLI 955

Query: 216 LGACRAGRVEEAFVLLRRMVDDG 238
              C AGR+ +     R++++ G
Sbjct: 956 DTLCTAGRLNDGLSYFRQLLELG 978



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 2/174 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I    K  K DEA+     M E G     +  + ++  L +G +  EAW L
Sbjct: 491 PDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKL 550

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +KE+++ P    YN LL+    +G +     +L++M       +  TY+ ++    +
Sbjct: 551 FHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSK 610

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
            G V  A  +L  M + G +   S+Y  VM  L++   + +A  F M C  + I
Sbjct: 611 NGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEA--FRMFCQMKKI 662



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 86/205 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+    K + +D  L +++ M   G   +  ++   + VL +  R +EA+ +
Sbjct: 211 PSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQI 270

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++    PD+  +  ++   C  G L+    V  KM+      D  TY  L+     
Sbjct: 271 LGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGD 330

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +G  +    +   MV DG +    +Y  V+ AL ++G   +A+        + I  +   
Sbjct: 331 SGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYS 390

Query: 281 FGSLGSKLIGLERFNEANFILKEMN 305
           + SL S  +  + F+ A  +   MN
Sbjct: 391 YNSLISGFLKADMFDRALELFNHMN 415



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 85/206 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  +A + ++  L +  ++  A RV   + + G     IT+  ++   ++  + +EA   
Sbjct: 456 PDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNF 515

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E    PD+ A N L+      G       +  +++E K+     TY+ L+ G  R
Sbjct: 516 FSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGR 575

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+E   LL  M          TY  V+  L + G    A+  +     +    D   
Sbjct: 576 EGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSS 635

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + ++   LI  ERF EA  +  +M K
Sbjct: 636 YNTVMYGLIKEERFEEAFRMFCQMKK 661



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 22/228 (9%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F K  A   +P    Y  L++  G   D ++V  + N    D          +  N  + 
Sbjct: 306 FWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVAD---------GYNDNIVSY 356

Query: 83  LSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
            +V+  LC+ + RLD+              P + +Y++LI    K    D AL + + M 
Sbjct: 357 TAVVDALCQ-VGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMN 415

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   +  T    ++   +  +  +A    E MK   + PD+ A N +L++    G L 
Sbjct: 416 ACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLG 475

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
               V  ++++  +  D  TY  ++    +A + +EA      MV+ G
Sbjct: 476 MAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETG 523



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 63/135 (46%)

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           +M E G  L+  T++ ++  L +     EA  + + M E  +SP +  Y+ L+ ++  K 
Sbjct: 168 VMREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKR 227

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           ++     +L +ME   +  +  +Y   +    +A R +EA+ +L +M D G      T+ 
Sbjct: 228 DVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHT 287

Query: 248 HVMGALLRLGYYAQA 262
            V+  L   G  + A
Sbjct: 288 VVIQVLCDAGRLSDA 302



 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 125/294 (42%), Gaps = 25/294 (8%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   Y  L+ + G +RD++TV +LLN+           ++          +   +  + 
Sbjct: 211 PSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQI 270

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++ D G  P    +  +I  LC   ++ +A  V   M         +T+   +++L +
Sbjct: 271 LGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTY---ITLLDK 327

Query: 151 GKRMEEAWGLMEVMKEIRV---SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
                ++  +ME+   +     + ++ +Y  ++ A C  G L     V  +M+E+ +  +
Sbjct: 328 CGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPE 387

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             +Y++L+ G  +A   + A  L   M   G S   + Y HV    L + YY ++     
Sbjct: 388 QYSYNSLISGFLKADMFDRALELFNHMNACGPSP--NGYTHV----LFINYYGKS----- 436

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
              G+ +K   + +  + SK I +     AN +L  +  R  ++G   R +YE+
Sbjct: 437 ---GQSLKA-IQRYEHMKSKGI-VPDVAAANAVLSSL-ARSGRLGMAKRVFYEL 484



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 71/161 (44%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           KS++ +L+  +     +++++   + +A  G  L+     P++  L + K+  EA  L  
Sbjct: 703 KSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFN 762

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
             K + VS    +YN L+     +  +     +  +M+    G D  TY+ ++    ++ 
Sbjct: 763 KFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSM 822

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           R+EE   +   M   G    Y TY  ++  L++     QA+
Sbjct: 823 RIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAI 863



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 81/207 (39%), Gaps = 5/207 (2%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P  + Y+ L+         +   ++ + M E G      ++  ++  L    R+ +    
Sbjct: 911  PNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSY 970

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
               + E+ + PDL  YN L+        +     +  +M+++ +  +  TY++L+L   +
Sbjct: 971  FRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGK 1030

Query: 221  AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            AG+  EA  +   ++  G      TY     AL+R GY               + +   L
Sbjct: 1031 AGKASEAAQMYEELLIKGWKPNVFTY----NALIR-GYSVSGSTDNAYAAYDCVAVGVSL 1085

Query: 281  FGSLGSKLIGLERFNEANFILKEMNKR 307
              +L S L+     N A  +  EM +R
Sbjct: 1086 KTALISGLVDENLINIAEGLFAEMKRR 1112



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 57/141 (40%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI  L K     EA+ V   M E G   S  T+  ++    + + ++    L+  M+
Sbjct: 181 YNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEME 240

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V P++ +Y   +              +L KME+     D  T+  ++   C AGR+ 
Sbjct: 241 ARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLS 300

Query: 226 EAFVLLRRMVDDGQSVLYSTY 246
           +A  +  +M    Q     TY
Sbjct: 301 DAKDVFWKMKASDQKPDRVTY 321


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 84/164 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI  LC+   ++ A+ V++ + + G   ++++++P+L    + K+M++A   
Sbjct: 84  PNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAF 143

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E+M      PD+ +YN LLTA C  G +     +L +++ +       +Y+ ++ G  +
Sbjct: 144 VELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTK 203

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           AG+ +EA  LL  M+  G      TY  +   L R     +A++
Sbjct: 204 AGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIR 247



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 112/243 (46%), Gaps = 2/243 (0%)

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLC 114
           LL++     C     T+N + N       + D    L  L    G P   +Y+ ++  L 
Sbjct: 3   LLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLF 62

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
             ++ ++A ++++ MA  G   + +TF+ ++S L R   +E A  ++E + +   +P+  
Sbjct: 63  TAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSL 122

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +YN LL A+C +  +      ++ M       D  +Y+ L+   CR G V+ A  LL ++
Sbjct: 123 SYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQL 182

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
              G S +  +Y  V+  L + G   +A++ +     + ++ D   + ++ S L   ++ 
Sbjct: 183 KGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKI 242

Query: 295 NEA 297
            EA
Sbjct: 243 EEA 245



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 109/273 (39%), Gaps = 39/273 (14%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN--------- 78
           ++  EP +  Y+ ++         E    L+ + A   C     TFN + +         
Sbjct: 44  SYGGEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVE 103

Query: 79  --------------TENSLS---VLSDLCRTLARLDKG------------FPRKSAYDTL 109
                         T NSLS   +L   C+   ++DK             +P   +Y+TL
Sbjct: 104 PAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQ-KKMDKAMAFVELMVSRGCYPDIVSYNTL 162

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           +  LC+  ++D A+ ++  +   G     I+++ ++  LT+  + +EA  L++ M    +
Sbjct: 163 LTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGL 222

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            PD+  Y  + +  C +  +        K+++  +      Y+A++LG C+      A  
Sbjct: 223 QPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAID 282

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           L   M+ +G     STY  ++  L   G   +A
Sbjct: 283 LFSYMISNGCMPNESTYTILVEGLAYEGLVKEA 315



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/144 (20%), Positives = 67/144 (46%)

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           ++++D M + G     IT++ +L+ + +  R+++A   +E +      P+  +YN +L  
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
                       ++++M  +    +  T++ L+   CR G VE A  +L ++   G +  
Sbjct: 61  LFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPN 120

Query: 243 YSTYAHVMGALLRLGYYAQAVKFV 266
             +Y  ++ A  +     +A+ FV
Sbjct: 121 SLSYNPLLHAFCKQKKMDKAMAFV 144


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 126/291 (43%), Gaps = 3/291 (1%)

Query: 19  VTRSFTKS-GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           ++R F K  GA   + +   Y+ +++    E DLE  R L  +           T+N + 
Sbjct: 238 LSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLI 297

Query: 78  NTENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           +    L +L +      ++      P    Y+ LI   CK +++ +A   +  M   G  
Sbjct: 298 DGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLK 357

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +T+   +    +   ++EA      M+ + ++P+   Y  L+ A C  GNL     +
Sbjct: 358 PNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKL 417

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           ++++ +  +  +  TY AL+ G C  GR++EA  + R M++ G +    TY  ++   ++
Sbjct: 418 VEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIK 477

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
                 A   +     + IK D  L+G++   L    R  EA  ++ E+ +
Sbjct: 478 AKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKE 528



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 2/205 (0%)

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKID 120
           R+ C      F+ + +    L +L +      ++ K   FP+  + + L+ RL K+ + D
Sbjct: 178 RNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGD 237

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
            + +    M   G   S  T++ ++  L +   +E A  L   MKE   +PD+  YN L+
Sbjct: 238 LSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLI 297

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +   G L     + ++M++     D  TY+AL+   C+  R+ +AF  L  M  +G  
Sbjct: 298 DGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLK 357

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKF 265
               TY+  + A  + G   +A+KF
Sbjct: 358 PNVVTYSTFIDAFCKEGMLQEAIKF 382



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 1/215 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           + GF P    Y++LI    KL  +DE + + + M +       IT++ +++   + +RM 
Sbjct: 283 EAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMP 342

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A+  +  MK   + P++  Y+  + A+C +G L         M    L  +  TY +L+
Sbjct: 343 KAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI 402

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
              C+AG + EA  L+  ++  G  +   TY  ++  L   G   +A +         + 
Sbjct: 403 DANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVA 462

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            + E + +L    I  +    A  ILKEM ++ +K
Sbjct: 463 PNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 497



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +LI   CK   + EAL++V+ + + G  L+ +T+  +L  L    RM+EA  +
Sbjct: 393 PNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEV 452

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    V+P+   Y  L+  +     +     +LK+M+E+ +  D   Y  ++ G C 
Sbjct: 453 FRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCN 512

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
             R+EEA +L+  + + G +     Y  +M A  + G   +A+
Sbjct: 513 ESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEAL 555



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  L+  LC+  ++ EA  V   M   G   +  T+  ++    + K ME A  +++ MK
Sbjct: 433 YTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMK 492

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  + PDL  Y  +L   C +  L     ++ +++E  +  +A  Y  L+    ++G+  
Sbjct: 493 EKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQAT 552

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           EA  LL  M+D G      TY  ++  L + G   +A+
Sbjct: 553 EALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAM 590



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 124/297 (41%), Gaps = 5/297 (1%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V R+   +G  P++ T   Y  LV+     +++E  + +L +    C       +  I  
Sbjct: 452 VFRAMLNAGVAPNQET---YTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILW 508

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
              + S L +    +  + +     +A  Y TL+    K  +  EAL +++ M + G   
Sbjct: 509 GLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIA 568

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           + +T+  ++  L +   ++EA      M EI + P++  Y  L+   C          + 
Sbjct: 569 TEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLF 628

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            +M ++ +  D   Y AL+ G  + G ++EA  L  RM++ G  +    Y  ++  L   
Sbjct: 629 DEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHS 688

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           G   +A   +    G+ +  D  ++  L  K   L + +EA  +  EM KR +  G 
Sbjct: 689 GQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGL 745



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 61/147 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  L+  LCK    + A ++ D M + G     I +  ++    +   ++EA  L
Sbjct: 603 PNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNL 662

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M EI +  DL AY  L+      G +     +L +M  + +  D   Y  L+     
Sbjct: 663 RDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYA 722

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            G+V+EA  L   M   G     S +A
Sbjct: 723 LGKVDEALELQNEMAKRGMITGLSDHA 749


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 104/248 (41%), Gaps = 23/248 (9%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R L     IPQ+  V ++ T  G  PD  T +   D +  AG  R    VR   +  
Sbjct: 275 ALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAG--RIGAAVRIFKSME 332

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRT---------LARLDKGF--PRKSAYDTLI 110
           AR              N     +++  LC+          LA++ K F  P    Y+ LI
Sbjct: 333 AR----------GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 382

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
             LCK   ++ A    D M E G      T++ ++S   +    + A G+ + M     S
Sbjct: 383 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCS 442

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P++  Y  L++  C +  LT  S   + M+E     D+  Y +LV G C++G++E   +L
Sbjct: 443 PNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCML 502

Query: 231 LRRMVDDG 238
              M   G
Sbjct: 503 FDEMERSG 510



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 85/206 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P      T+I  LCK  +I  A+R+   M   G   + + +  ++  L + ++M+ A  +
Sbjct: 303 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 362

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK+   +PD   YN L+   C  G++ A      +M E     D  TY+ LV G C+
Sbjct: 363 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCK 422

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG  + A  +   M     S    TY  ++  L +     +A  +      R    D+ +
Sbjct: 423 AGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFV 482

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + SL   L    +      +  EM +
Sbjct: 483 YSSLVDGLCKSGKLEGGCMLFDEMER 508



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 85/209 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ ++  LCK  K+  A+   +     G  +   T+  I+  L + K++++A  L
Sbjct: 128 PSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVAL 187

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME +     +P +  YN LL   C  G L     +L+K+ +     D  TY +L+ G  +
Sbjct: 188 MEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGK 247

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R  EA+ L + M   G  +    Y  ++  LL+ G   QA         +    D   
Sbjct: 248 EKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVT 307

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
             ++   L    R   A  I K M  R L
Sbjct: 308 LSTMIDGLCKAGRIGAAVRIFKSMEARGL 336



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ L+  LCK+ +++EA+ ++  + + G     +T+  ++  L + KR  EA+ L
Sbjct: 198 PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 257

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    +  D   Y  L+      G +   S V K M  +    D  T   ++ G C+
Sbjct: 258 FKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK 317

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           AGR+  A  + + M   G     V+YS   H
Sbjct: 318 AGRIGAAVRIFKSMEARGLAPNEVVYSALIH 348



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 1/209 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAW 158
            P    ++ LI   C  ++ +EA  V+  M E  G   S  T + +L  L +  ++  A 
Sbjct: 91  LPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAM 150

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
              E       + D+  Y  ++        +     +++K+          TY+AL+ G 
Sbjct: 151 DHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGL 210

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+ GR+EEA  LLR++VD+G +    TY  ++  L +     +A K       R + LDT
Sbjct: 211 CKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDT 270

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKR 307
             + +L   L+   +  +A+ + K M  +
Sbjct: 271 VCYTALIRGLLQAGKIPQASSVYKTMTSQ 299



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 3/206 (1%)

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKRMEEAWG 159
           R+ + D ++     LK  D A  +   ++   FG   S  T + +L V  R KR  EA  
Sbjct: 21  REISTDAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGN 80

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGA 218
           L++        PD+  +N L+T YC          V+++MEE+  +    +T++ ++ G 
Sbjct: 81  LLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGL 140

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C++G+V  A         +G ++   TY  ++  L +      AV  +            
Sbjct: 141 CKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTI 200

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
             + +L + L  + R  EA  +L+++
Sbjct: 201 ATYNALLNGLCKMGRLEEAIDLLRKI 226


>gi|356525788|ref|XP_003531505.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Glycine max]
          Length = 572

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 141/315 (44%), Gaps = 23/315 (7%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           ++V V      SG  PD   +A Y  LVN      ++     L+ K           T+N
Sbjct: 117 KAVRVMEMMVGSGIIPD---AASYTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYN 173

Query: 75  FITNTENSLSVLSDLCRTLARLD----KGF-PRKSAYDTLIGRLCKLKKIDEALRVVD-I 128
            +      L +  +L ++L  LD    KG  P    Y  L+    K + +DEA++++D I
Sbjct: 174 TLVK---GLCMHGNLNQSLQLLDRLTKKGLIPNAFTYSFLLEAAYKERGVDEAMKLLDDI 230

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           +A+GG   + ++++ +L+ L +  R EEA  L + +     SP + ++N LL + C++G 
Sbjct: 231 IAKGG-EPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGR 289

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
               + +L +M++E       TY+ L+      GR E+AF +L  M   G     ++Y  
Sbjct: 290 WEEANELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNP 349

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIK---LDTELFGSLGSKLIGLERFNEANFILKEMN 305
           ++  L + G     V  V+ C  + I       E   S  S L    +  EA FI++ + 
Sbjct: 350 IIARLCKEG----KVDLVLKCLDQMIHRRCHPNEGTYSAISMLSEQGKVQEAFFIIQSLG 405

Query: 306 KRDLKMGFKLRDYYE 320
               K  F + D+Y+
Sbjct: 406 S---KQNFPMHDFYK 417



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  +    L+  LCK  K  +A+RV+++M   G    A ++  +++ L +   +  A  L
Sbjct: 97  PEVNQATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQL 156

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M+      +   YN L+   C  GNL  +  +L ++ ++ L  +A TY  L+  A +
Sbjct: 157 VEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLIPNAFTYSFLLEAAYK 216

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V+EA  LL  ++  G      +Y  ++  L + G   +A+K       +        
Sbjct: 217 ERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVS 276

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           F  L   L    R+ EAN +L EM+K D
Sbjct: 277 FNILLRSLCYEGRWEEANELLAEMDKED 304



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 127/305 (41%), Gaps = 25/305 (8%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPD---EPTSAYYDDLVNAAGHERDLETVRYL 57
           + LL +L  K LIP +   T SF    A+ +   +      DD++ A G E +L +   L
Sbjct: 189 LQLLDRLTKKGLIPNAF--TYSFLLEAAYKERGVDEAMKLLDDII-AKGGEPNLVSYNVL 245

Query: 58  LNKRARDC-------CFNTANTFNFITNTENSLSVLSDLC---------RTLARLDK--G 99
           L    ++         F       F  +  +   +L  LC           LA +DK   
Sbjct: 246 LTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEANELLAEMDKEDQ 305

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+ LI  L    + ++A +V+D M   GF  SA +++PI++ L +  +++    
Sbjct: 306 PPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIARLCKEGKVDLVLK 365

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            ++ M   R  P+   Y+  ++    +G +     +++ +  ++       Y  L+   C
Sbjct: 366 CLDQMIHRRCHPNEGTYS-AISMLSEQGKVQEAFFIIQSLGSKQNFPMHDFYKNLIASLC 424

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R G    AF +L  M   G +    TY+ ++  + R G   +A+K   +    D + D +
Sbjct: 425 RKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDID 484

Query: 280 LFGSL 284
            + +L
Sbjct: 485 NYNAL 489



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 52/265 (19%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSV 85
           P+   ++ L+ +  +E   E    LL +  ++    +  T+N +         TE +  V
Sbjct: 272 PSVVSFNILLRSLCYEGRWEEANELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKV 331

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA-------EGGFGLS 137
           L ++ R+      GF    ++Y+ +I RLCK  K+D  L+ +D M        EG +  S
Sbjct: 332 LDEMTRS------GFKASATSYNPIIARLCKEGKVDLVLKCLDQMIHRRCHPNEGTY--S 383

Query: 138 AIT-----------------------------FHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           AI+                             +  +++ L R      A+ ++  M +  
Sbjct: 384 AISMLSEQGKVQEAFFIIQSLGSKQNFPMHDFYKNLIASLCRKGNTYPAFQMLYEMTKYG 443

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
            +PD   Y+ L+   C +G L     + + +EE     D   Y+AL+LG C+A R + + 
Sbjct: 444 FTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNALILGFCKAQRTDLSI 503

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGAL 253
            +   MV+ G     +TY  ++  L
Sbjct: 504 EIFLMMVNKGCVPNENTYTILVEGL 528


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 126/291 (43%), Gaps = 3/291 (1%)

Query: 19  VTRSFTKS-GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           ++R F K  GA   + +   Y+ +++    E DLE  R L  +           T+N + 
Sbjct: 39  LSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLI 98

Query: 78  NTENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           +    L +L +      ++      P    Y+ LI   CK +++ +A   +  M   G  
Sbjct: 99  DGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLK 158

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +T+   +    +   ++EA      M+ + ++P+   Y  L+ A C  GNL     +
Sbjct: 159 PNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKL 218

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           ++++ +  +  +  TY AL+ G C  GR++EA  + R M++ G +    TY  ++   ++
Sbjct: 219 VEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIK 278

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
                 A   +     + IK D  L+G++   L    R  EA  ++ E+ +
Sbjct: 279 AKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKE 329



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +LI   CK   + EAL++V+ + + G  L+ +T+  +L  L    RM+EA  +
Sbjct: 194 PNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEV 253

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    V+P+   Y  L+  +     +     +LK+M+E+ +  D   Y  ++ G C 
Sbjct: 254 FRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCN 313

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM--------VCGGR 272
             R+EEA +L+  + + G +     Y  +M A  + G   +A+  +         +C   
Sbjct: 314 ESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNN 373

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRD 317
             ++  +LF  +  K +  ++      I   M   +L+    LRD
Sbjct: 374 CFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRD 418



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP+  + + L+ RL K+ + D + +    M   G   S  T++ ++  L +   +E A  
Sbjct: 18  FPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARS 77

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   MKE   +PD+  YN L+  +   G L     + ++M++     D  TY+AL+   C
Sbjct: 78  LFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFC 137

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +  R+ +AF  L  M  +G      TY+  + A  + G   +A+KF
Sbjct: 138 KFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKF 183



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 1/215 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           + GF P    Y++LI    KL  +DE + + + M +       IT++ +++   + +RM 
Sbjct: 84  EAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMP 143

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A+  +  MK   + P++  Y+  + A+C +G L         M    L  +  TY +L+
Sbjct: 144 KAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI 203

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
              C+AG + EA  L+  ++  G  +   TY  ++  L   G   +A +         + 
Sbjct: 204 DANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVA 263

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            + E + +L    I  +    A  ILKEM ++ +K
Sbjct: 264 PNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 298



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 24/244 (9%)

Query: 94  ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           A L+ G  P +  Y  L+    K K+++ A  ++  M E       + +  IL  L    
Sbjct: 256 AMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNES 315

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL---------------- 196
           R+EEA  L+  +KE  ++ +   Y  L+ AY   G  T    +L                
Sbjct: 316 RLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCF 375

Query: 197 ---KKMEEEKLG----ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
              KK+ +E L      D   Y AL+ G  + G ++EA  L  RM++ G  +    Y  +
Sbjct: 376 EVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTAL 435

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   G   +A   +    G+ +  D  ++  L  K   L + +EA  +  EM KR +
Sbjct: 436 IWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 495

Query: 310 KMGF 313
             G 
Sbjct: 496 ITGL 499



 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 58/139 (41%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  LCK    + A ++ D M + G     I +  ++    +   ++EA  L + M EI 
Sbjct: 365 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIG 424

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           +  DL AY  L+      G +     +L +M  + +  D   Y  L+      G+V+EA 
Sbjct: 425 MELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEAL 484

Query: 229 VLLRRMVDDGQSVLYSTYA 247
            L   M   G     S +A
Sbjct: 485 ELQNEMAKRGMITGLSDHA 503


>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
 gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 82/170 (48%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P    Y+ LI       K+D A ++++ M   G   +   +  ++S   +  R+EE
Sbjct: 256 DQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEE 315

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A    E MK   +  D   Y  L+  +C  G +     +L++M+E K  AD  T + L+ 
Sbjct: 316 AMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLR 375

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G C  GR EEA  +L R+  +G  +  ++Y  V+ +L + G   +A++ +
Sbjct: 376 GFCGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQKGDLDKALELL 425



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 75/163 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   CK  +++EA+   + M   G     + +  +++   R  R++EA  L
Sbjct: 295 PNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMAL 354

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E MKE +   D+   N LL  +C +G      G+L ++  E +  +  +Y  ++   C+
Sbjct: 355 LEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQ 414

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            G +++A  LL   +  G    ++T   ++  L + G    AV
Sbjct: 415 KGDLDKALELLGLTLSRGFVPHHATSNELLVGLCKAGMADDAV 457



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 103/241 (42%), Gaps = 15/241 (6%)

Query: 8   PTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCF 67
           P  FL P+     ++  +      +P    ++  VN   HERD +    + N       F
Sbjct: 23  PLHFLTPKLDPPPKTLLEPRR---KPKFISHETAVNLIKHERDPQHALEIFNLVVEQKGF 79

Query: 68  NTAN-TFNFITNT---ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCK---LKKID 120
           N  + T++ I +          +  L R +      F  +S +  L+    K    +++ 
Sbjct: 80  NHNHATYSTIIDKLARAKKFQAVDALLRQMMYETCKF-HESLFLNLMKYFAKSSEFERVV 138

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG-LMEVMKEIRVSPDLTAYNYL 179
           E    +  +      L AI+    L++L   K+++   G L+++ K+  + P+   +N  
Sbjct: 139 EMFNKIQPIVREKPSLKAIS--TCLNLLVESKQVDLLRGFLLDLNKDHMLKPNTCIFNIF 196

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLG-ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +  +C  G+L +   V+K+M++  +   +  TY  L+ G C +GR++EA  L   MV   
Sbjct: 197 IKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKD 256

Query: 239 Q 239
           Q
Sbjct: 257 Q 257


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 2/180 (1%)

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR-TLARLDKG-FPRKSAYDTLIGRLC 114
           L+N+ + + C     T+N + N    +  +SD     +  + KG  P    ++TLI   C
Sbjct: 412 LMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYC 471

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           K  K+D A+ +VD M   G     IT++ IL+ L +  + E+  G  ++M E    P++ 
Sbjct: 472 KKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNII 531

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            YN L  ++C    +     ++++M+ + L  D   +  L+ G C  G ++ A+ L +R+
Sbjct: 532 TYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRV 591



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 94/205 (45%), Gaps = 1/205 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++++  LCK  K ++ +    +M E G   + IT++ +     + +++EEA  L
Sbjct: 493 PDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNL 552

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGAC 219
           +E M+   ++PD+  +  L+  +C  G+L     + K+++E+ K      TY+ ++    
Sbjct: 553 IEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFA 612

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
               +  A  L  +M ++G S    TY  ++    + G       F++V   + +     
Sbjct: 613 GKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLT 672

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            FG + + L    R +EA  I+  M
Sbjct: 673 TFGRVLNCLCLKRRVHEAVGIIHLM 697



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALR-VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y+ +I  LCK+  + +A   V+D +A+G       TF+ ++    +  +++ A  
Sbjct: 423 PDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLP-DVFTFNTLIDGYCKKLKLDNAIE 481

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +++ M    VSPD+  YN +L   C  G      G  K M E+    +  TY+ L    C
Sbjct: 482 IVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFC 541

Query: 220 RAGRVEEAFVLLRRMVDDG 238
           +A +VEEA  L+  M + G
Sbjct: 542 KARKVEEALNLIEEMQNKG 560



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 36/223 (16%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P +S Y +LI  LC+   ID A+ V +   E G   + +  + ++  L++   + +
Sbjct: 349 KGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQ 408

Query: 157 AWGLMEVMKEIRVSPDLTAYNY-----------------------------------LLT 181
           A  LM  M E   SPD+  YN                                    L+ 
Sbjct: 409 ALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLID 468

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            YC K  L     ++ +M    +  D  TY++++ G C+AG+ E+     + M++ G   
Sbjct: 469 GYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVP 528

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
              TY  +  +  +     +A+  +     + +  D   FG+L
Sbjct: 529 NIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTL 571



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 36/233 (15%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C  +  ++N I N            +   R+ DKG  P    +   +   C+  +   A 
Sbjct: 107 CEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAAR 166

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           R+++ M   G   SA+ +  ++          EA  L E M  + + PD+ A+N L+   
Sbjct: 167 RLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTL 226

Query: 184 CFKGNLTATSGVLKKMEE----------------------------------EKLGADAR 209
           C KG++  +  +L K+ +                                    L  D  
Sbjct: 227 CRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVI 286

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           TY+ L+ G C+  +V EA   LR+MV++G      TY  ++    +LG    A
Sbjct: 287 TYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNA 339



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 1/166 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     +  I   C+   ++EA+R++D +  G      IT++ ++  L +  ++ EA   
Sbjct: 249 PNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRG-LTPDVITYNTLICGLCKNFKVVEAEHY 307

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M      PD   YN ++  YC  G +     +L+    +    D  TY +L+ G C+
Sbjct: 308 LRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQ 367

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G ++ A  +    ++ G          ++  L + G   QA+K +
Sbjct: 368 DGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLM 413



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 36/200 (18%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKL-----------------------------------KKI 119
           +++G+ P    Y+++I   CKL                                     I
Sbjct: 312 VNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDI 371

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           D A+ V +   E G   + +  + ++  L++   + +A  LM  M E   SPD+  YN +
Sbjct: 372 DRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLV 431

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C  G ++    ++     +    D  T++ L+ G C+  +++ A  ++ RM + G 
Sbjct: 432 INGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGV 491

Query: 240 SVLYSTYAHVMGALLRLGYY 259
           S    TY  ++  L + G Y
Sbjct: 492 SPDVITYNSILNGLCKAGKY 511



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 20/239 (8%)

Query: 10  KFLIPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFN 68
           K  +  ++ +       G  PD  T ++  + L  A  +E  + T + ++ K     C  
Sbjct: 473 KLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKG----CVP 528

Query: 69  TANTFNFITNT-------ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKID 120
              T+N +T +       E +L+++ ++       +KG  P    + TL+   C    +D
Sbjct: 529 NIITYNILTESFCKARKVEEALNLIEEM------QNKGLTPDVVNFGTLMKGFCDNGDLD 582

Query: 121 EALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            A ++   + E   F  +  T++ +++       M  A  L   M E   SPD   Y  +
Sbjct: 583 GAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVM 642

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +  +C  GN+ +    L    E+ L     T+  ++   C   RV EA  ++  MV  G
Sbjct: 643 IDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKG 701


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 1/222 (0%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            L RT+ R +   P    Y TL+   C++++ ++A+ +V  M   G   + I ++PI+  
Sbjct: 272 QLWRTMKR-ENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPIIDS 330

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    R +EA G+ME        P ++ YN L+  +C  G+L   S VLK M        
Sbjct: 331 LAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDPT 390

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY+       R G+ EE   L  +M++ G +    TY  ++  +        AV+   
Sbjct: 391 LTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEERLDLAVQVSK 450

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               R   LD      L   L  + R  EA    ++M +R +
Sbjct: 451 EMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGI 492



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 69/165 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y++L+   CK   +  A +V+ +M   GF  +  T++      +R  + EE   L
Sbjct: 354 PTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNL 413

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E   +PD   Y+ L+   C +  L     V K+M       D  T   LV   C+
Sbjct: 414 YTKMIESGHTPDRLTYHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCK 473

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             R+EEAF     M+  G    Y T+  +  AL + G    A K 
Sbjct: 474 MHRLEEAFAEFEDMIRRGIVPQYLTFERMNNALRKRGLTEMARKL 518



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD  + P    Y+ L+    + +K+  A ++   M       + +T+  ++    R +R 
Sbjct: 243 LDPSWVPSIRVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRS 302

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A  L+  M+   + P++  YN ++ +    G      G++++    + G    TY++L
Sbjct: 303 EKAIELVGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSL 362

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           V G C+AG +  A  +L+ M+  G     +TY +      R G
Sbjct: 363 VKGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCG 405



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 14/184 (7%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG-------KRMEE 156
           S +  L+  LCK   +  A    D   + G   S +    + +VL  G       KR E+
Sbjct: 215 SLFKILLDSLCKEGHVRVASEYFD--QQRGLDPSWVPSIRVYNVLLNGWFRSRKLKRAEQ 272

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
            W     MK   V P +  Y  L+  YC          ++ +M  + +  +   Y+ ++ 
Sbjct: 273 LW---RTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPIID 329

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDI 274
               AGR +EA  ++ R +        STY  ++    + G    A K   +M+  G D 
Sbjct: 330 SLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDP 389

Query: 275 KLDT 278
            L T
Sbjct: 390 TLTT 393


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 7/198 (3%)

Query: 62  ARDCC-FNTA-NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKI 119
           A DC  +NT  NT+     TE++L +L+++     +     P    Y+ LIG LCK   +
Sbjct: 667 APDCITYNTIINTYCIKGKTEDALDILNEM-----KSYGIMPNAVTYNILIGGLCKTGAV 721

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           ++A   +D M    F  + IT   ++   +R ++ ++   + E +    +   LT YN L
Sbjct: 722 EKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTL 781

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +T +C  G       VL +M +  + AD  TY+AL+ G C    VE+A     +M  DG 
Sbjct: 782 ITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGI 841

Query: 240 SVLYSTYAHVMGALLRLG 257
           +   +TY  ++G L   G
Sbjct: 842 APNITTYNTLLGGLSNAG 859



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 95/209 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I  L K  ++ EA  +   M   G     +T   ++  L +  + +EA  +
Sbjct: 389 PNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEV 448

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E + ++ ++P+   Y+ LL  YC  G +     VL+KME+E +  +  T+ +++ G  +
Sbjct: 449 FETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAK 508

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + +A  +LR MV          YA ++    + G    A  F      R ++    +
Sbjct: 509 KGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVI 568

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F  L + L  + R +EA  ++ +M  + +
Sbjct: 569 FDILLNNLKRVGRMDEARSLIIDMYSKGI 597



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 5/223 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDL 89
           P    Y  L++       +E    +L K  ++       TF+ I N    +  LS   D+
Sbjct: 459 PNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDV 518

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            R + + +   P    Y  LI    K  + D A      M       S + F  +L+ L 
Sbjct: 519 LREMVQRNV-MPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLK 577

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R  RM+EA  L+  M    + PD+  Y  L+  Y  +GN  A   ++++M+E+ +  D  
Sbjct: 578 RVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVV 637

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            Y+AL+ G  R G+ +  +V   RM++ G +    TY  ++  
Sbjct: 638 AYNALIKGLLRLGKYDPRYV-CSRMIELGLAPDCITYNTIINT 679



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 21/202 (10%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+TLI   C+L    +A  V+D M + G     +T++ ++     G  +E+A      
Sbjct: 776 TVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQ 835

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKG----NLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           M    ++P++T YN LL      G     +  T  ++ +M E  L  +A TYD LV G  
Sbjct: 836 MFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYG 895

Query: 220 RAGRVEEAFVLLRRMVDDG-------QSVLYSTYA---------HVMGALLRLGYYAQAV 263
           R G  ++  +L   M+  G        +VL S YA          ++  LL  G    + 
Sbjct: 896 RVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSF 955

Query: 264 KF-VMVCGGRDIKLDTELFGSL 284
            + ++ CG  ++  + E+  SL
Sbjct: 956 TYDILTCGWLNLSYEPEIDRSL 977



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 82/195 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   CKL K++ A  V+  M +     + ITF  I++   +   + +A  +
Sbjct: 459 PNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDV 518

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V P+   Y  L+  Y   G         K+M+  +L      +D L+    R
Sbjct: 519 LREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKR 578

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR++EA  L+  M   G       YA ++    + G    A+  V     ++I+ D   
Sbjct: 579 VGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVA 638

Query: 281 FGSLGSKLIGLERFN 295
           + +L   L+ L +++
Sbjct: 639 YNALIKGLLRLGKYD 653



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI    K      AL +V  M E       + ++ ++  L R  + +  + +
Sbjct: 599 PDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY-V 657

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E+ ++PD   YN ++  YC KG       +L +M+   +  +A TY+ L+ G C+
Sbjct: 658 CSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCK 717

Query: 221 AGRVEEAFVLLRRMV 235
            G VE+A   L  M+
Sbjct: 718 TGAVEKAESALDEML 732



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 19/222 (8%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV------LTRGKRM-EEAWG 159
           +TLI   C+   + +A  +++        +  +T++ +L        LTR + +  E  G
Sbjct: 236 NTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILG 295

Query: 160 LME-----------VMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             +              EI+ + P L  Y  L+ AYC    +  +  + KKM    +  D
Sbjct: 296 FWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPD 355

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             T  +++ G CR G++ EA VL R M + G    + +YA ++ +L + G   +A     
Sbjct: 356 VVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQS 415

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               R I  D     ++   L  + +  EA  + + + K +L
Sbjct: 416 QMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNL 457



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 6/185 (3%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           N   +LS++ ++     R D       AY+ LI  L +L K D    V   M E G    
Sbjct: 616 NQLAALSIVQEMKEKNIRFDV-----VAYNALIKGLLRLGKYDPRY-VCSRMIELGLAPD 669

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            IT++ I++      + E+A  ++  MK   + P+   YN L+   C  G +      L 
Sbjct: 670 CITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALD 729

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M   +      T+  LV    R+ + ++   +  ++V  G  +  + Y  ++    RLG
Sbjct: 730 EMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLG 789

Query: 258 YYAQA 262
              +A
Sbjct: 790 MTRKA 794



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 88/198 (44%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
            C+  K+ EA  +   M E G   + +++  I++ L +  R+ EA+ L   M    +S D
Sbjct: 366 FCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFD 425

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +     ++      G       V + + +  L  +  TY AL+ G C+ G++E A ++L+
Sbjct: 426 IVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQ 485

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
           +M  +       T++ ++    + G  ++AV  +     R++  +T ++  L        
Sbjct: 486 KMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAG 545

Query: 293 RFNEANFILKEMNKRDLK 310
             + A+   KEM  R L+
Sbjct: 546 EQDVADDFCKEMKSRRLE 563



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V PD+ + N L+ + C  G+L    G L+    + +  D  TY+ ++ G C+ G V++ F
Sbjct: 125 VVPDVFSVNVLVHSLCKVGDLDLALGYLR--NNDVVDIDNVTYNTVIWGFCQKGLVDQGF 182

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVMVCGG 271
            LL  MV  G      T   ++    R+G   YA+ V + +V GG
Sbjct: 183 GLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGG 227



 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V  D   YN ++  +C KG +    G+L +M +  L  D+ T + LV G CR G V+ A 
Sbjct: 158 VDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAE 217

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            ++  +VD G +        ++      G  +QA + +      D+K+D   + +L
Sbjct: 218 WVMYNLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTL 273



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 57/123 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+T+I   C+   +D+   ++  M + G    +IT + ++    R   ++ A  +M  +
Sbjct: 164 TYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNL 223

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V+ D+   N L+  YC  G ++  + +++      +  D  TY+ L+   C+ G +
Sbjct: 224 VDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDL 283

Query: 225 EEA 227
             A
Sbjct: 284 TRA 286



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 14/168 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEAL------RVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           P   + + L+  LCK+  +D AL       VVDI          +T++ ++    +   +
Sbjct: 127 PDVFSVNVLVHSLCKVGDLDLALGYLRNNDVVDI--------DNVTYNTVIWGFCQKGLV 178

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++ +GL+  M +  +  D    N L+  YC  G +     V+  + +  +  D    + L
Sbjct: 179 DQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTL 238

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C AG + +A  L+         +   TY  ++ A  + G   +A
Sbjct: 239 IDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRA 286


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI   CK  K+D A+ +   MAE    L  +T+  ++S L++  R  +A  +
Sbjct: 358 PDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERV 417

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  + PD T Y  ++ A+C KG++     +LK+M+ +       TY+ ++ G C+
Sbjct: 418 LREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCK 477

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G+++ A +LL  M++ G S    TY  ++    + G  A +
Sbjct: 478 LGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANS 519



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 20/235 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI  +C+ + +D    +   M++ G      T+  ++    R  RME A  +
Sbjct: 218 PTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKM 277

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M++  V+P+   +  L+ A+C +GN+ A   + + M    +  D   Y+ALV G CR
Sbjct: 278 FNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCR 337

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A  ++ A  ++  M + G      TY  ++    + G    A+        +++ LD   
Sbjct: 338 ARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVT 397

Query: 281 FGSLGSKLIGLERFNEANFILKEM--------------------NKRDLKMGFKL 315
           + +L S L    R  +A  +L+EM                     K D+K GFKL
Sbjct: 398 YTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKL 452



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 115/285 (40%), Gaps = 22/285 (7%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +PT   ++ L++     RDL+ V         D  +   +      +     +++   CR
Sbjct: 217 QPTVVTFNTLISGMCRARDLDAV---------DGLYKEMSDVGVKPDVYTYGALIKGFCR 267

Query: 92  TLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           T  R++               P    + TLI   CK   ++  + +   M   G     +
Sbjct: 268 T-GRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLV 326

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
            ++ +++ L R + ++ A  ++E MK   + PD   Y  L+   C  G L     + +KM
Sbjct: 327 AYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKM 386

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
            E+++  D  TY AL+ G  +AGR  +A  +LR M++       +TY  V+ A  R G  
Sbjct: 387 AEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDV 446

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
               K +     +  K     +  + + L  L +   A+ +L  M
Sbjct: 447 KTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAM 491



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 2/160 (1%)

Query: 153 RMEEAWGLMEVMKEIR--VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           R+ E     +V  E+R  V P +  +N L++  C   +L A  G+ K+M +  +  D  T
Sbjct: 198 RLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYT 257

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y AL+ G CR GR+E A  +   M D G +     +  ++ A  + G     +       
Sbjct: 258 YGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMR 317

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            R +  D   + +L + L        A  I++EM    LK
Sbjct: 318 VRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLK 357


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 89/200 (44%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           SAY++LI    K     +AL V  +M + G      TF+ +++   + KR++  W L E 
Sbjct: 90  SAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEE 149

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+    SP++  Y+ L+ A C  G +     V   M+      +  TY +++ G  ++G 
Sbjct: 150 MQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGH 209

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           V++AF L   M  +G       Y  ++  L R G    A K       + ++ D   F S
Sbjct: 210 VDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTS 269

Query: 284 LGSKLIGLERFNEANFILKE 303
           L   L    R +EA  I +E
Sbjct: 270 LVYGLGVAGRASEARRIFQE 289



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI  LCK K++DEA  +   + E G      TF+ ++  L +  R+ +A+ L+  MK
Sbjct: 302 YNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMK 361

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               +PD+T YN L+      G +     +L +M+      D  TY+ L+  +C+ GR+E
Sbjct: 362 RAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIE 421

Query: 226 EAFVLLRRMVDDG--QSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +A  L   +   G   +V Y+T   ++  L   G   +A K 
Sbjct: 422 DALRLFEEISAKGFANTVTYNT---ILNGLCMAGRVDEAYKL 460



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 122/290 (42%), Gaps = 40/290 (13%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           +++ V R   +SG  PD  T   ++ L+NA    + +++V  L  +     C     T++
Sbjct: 107 KALAVYRVMGQSGLRPDTYT---FNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYS 163

Query: 75  FITN-------TENSLSVLSDL----CRT--------------LARLDKGF--------- 100
            + +        E +L V  D+    CR                  +DK F         
Sbjct: 164 ILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSE 223

Query: 101 ---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
                +  Y++LI  L +  + D A ++   M   G     +TF  ++  L    R  EA
Sbjct: 224 GLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEA 283

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + +  +++  + D+  YN L+   C    L     +  ++EE+ L  D  T++AL+ G
Sbjct: 284 RRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDG 343

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
            C++GR+ +AF+LL  M   G +   + Y  ++  L + G   +A + ++
Sbjct: 344 LCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLL 393



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 8/217 (3%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFITNT 79
           R     G  PD  T   +  LV   G        R +  + ARD  C    N +N + +T
Sbjct: 253 REMLSKGLQPDHVT---FTSLVYGLGVAGRASEARRIF-QEARDVGCALDVNLYNVLIDT 308

Query: 80  ENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
                 L +       L++    P    ++ L+  LCK  +I +A  ++  M   G    
Sbjct: 309 LCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPD 368

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
              ++ ++  L +  R+EEA  L+  M+ +   PD+  YN L+   C  G +     + +
Sbjct: 369 VTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFE 428

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           ++  +   A+  TY+ ++ G C AGRV+EA+ L   M
Sbjct: 429 EISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGM 464



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 70/156 (44%)

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +E++   ++ M+  R +   +AYN L+ A+   G       V + M +  L  D  T++ 
Sbjct: 70  LEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNV 129

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+    +A RV+  + L   M +   S    TY+ ++ A+ + G   +A+K  +    R 
Sbjct: 130 LMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRG 189

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + +   + S+   L      ++A F+ +EM    L
Sbjct: 190 CRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGL 225


>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 80/182 (43%), Gaps = 37/182 (20%)

Query: 97  DKGFPR--KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
             G PR  +  +D ++   C    +DEA  +VDIM  GGF     +++  LS L R  R+
Sbjct: 273 QHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRV 332

Query: 155 EEAWGLMEVMKEIRV-----------------------------------SPDLTAYNYL 179
            EA  L+  M   R+                                   SPD+  Y  L
Sbjct: 333 GEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSL 392

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           L AYC KGN+ A + +L +M ++    ++ TY+ L+    RAGR  EA  LL RM + G 
Sbjct: 393 LHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGY 452

Query: 240 SV 241
           S+
Sbjct: 453 SL 454



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 115/269 (42%), Gaps = 27/269 (10%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           +F +SG     P    Y  L++A   + ++     +L++ A+  C   + T+N +  +  
Sbjct: 375 NFIRSGVM--SPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLW 432

Query: 82  SLSVLSDLCRTLARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGG------ 133
                ++  R L R+ +KG+   +A  + +I  LC+  K+D A+ +VD M E G      
Sbjct: 433 RAGRTTEAERLLERMSEKGYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGSTALGR 492

Query: 134 FGLS-----------------AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
            G S                  IT+  ++S L +  R +EA   +  M    +SPD   Y
Sbjct: 493 LGNSFLSVVSDSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIY 552

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           +  +  YC  G  +    VL+ ME++      RTY+ L+ G     + +E   L+  M +
Sbjct: 553 DTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEE 612

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G S    TY  ++ +  + G   +   F
Sbjct: 613 KGVSPNVLTYNSLIKSFCQQGMLTRPCLF 641



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 30/218 (13%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           +T++   CK   ++EA R+V+ M   G   + +TF+  +S L +  R+ +A+ + + M+E
Sbjct: 211 NTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQE 270

Query: 167 IRVS----PDLTAYNYLLTAYCFKG---------NLTATSGVLKKMEEEKLGADARTYDA 213
                   PD   ++ +L+ +C  G         ++    G L+++E         +Y+ 
Sbjct: 271 DWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVE---------SYNR 321

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVMVCG- 270
            + G  R GRV EA  LLR M  +       TY  ++  L + G  + A+ V+  +  G 
Sbjct: 322 WLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGV 381

Query: 271 -GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
              D+   T L  +  SK         AN IL EM ++
Sbjct: 382 MSPDVVTYTSLLHAYCSK----GNIAAANRILDEMAQK 415



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 97/207 (46%), Gaps = 22/207 (10%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMA---EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + L+  LC   +++ A RV + M    E  FG+ A  +        R  R  +A  +++ 
Sbjct: 149 NLLLRALCDAGRMELAQRVFEAMPVRNEFSFGILARGY-------CRAGRSVDALKVLDG 201

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M  +    +L   N ++  +C +G +     ++++M  + L  +  T+++ +   C+AGR
Sbjct: 202 MPSM----NLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGR 257

Query: 224 VEEAFVLLRRMVDDGQSVL----YSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLD 277
           V +A+ + + M +D Q  L      T+  ++      G+  +A   V  M CGG   +++
Sbjct: 258 VLDAYRIFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVE 317

Query: 278 TELFGSLGSKLIGLERFNEANFILKEM 304
           +  +    S L+   R  EA+ +L+EM
Sbjct: 318 S--YNRWLSGLVRNGRVGEAHELLREM 342


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R+  A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E A    +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A+++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 86/190 (45%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV  A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK   + +A  ++D M+  G     IT+  ++    +   +E A   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEY 333

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  +  D  AY  L++  C +G       +L++M    L  +  TY  ++   C+
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G V     LL+ M  DG
Sbjct: 394 KGDVWTGSKLLKEMQRDG 411



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 3/219 (1%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
             L+ G C+  ++++A  L   M+D+G      T+  ++    + G    A++       
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLS 269

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +  D   + +L   L       +A  ++ EM+ + LK
Sbjct: 270 QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D   P    Y +L+  LCK  +  EA ++ D M + G      T+  +L    +  R+
Sbjct: 271 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRV 330

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E+  L ++M  I V PD+  YN L+   C  G +   + +L  M    +  D  TY  L
Sbjct: 331 IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTL 390

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G CR  R+++A  L + MV  G S    TY  ++  L      A A
Sbjct: 391 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAA 438



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%)

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
           + +D+A+ V++ M + G     +T++ IL       + +EA G ++ M+   V P++  Y
Sbjct: 223 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTY 282

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           + L+   C  G  T    +   M +  L  D  TY  L+ G C+ GRV E+  L   MV 
Sbjct: 283 SSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVR 342

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G      TY  ++      G   +A K +       +K D   +G+L +    + R ++
Sbjct: 343 IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDD 402

Query: 297 ANFILKEM 304
           A  + KEM
Sbjct: 403 ALALFKEM 410



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 86/197 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y TL+   CK  ++ E+ ++ D+M   G     IT++ ++       +M+EA  L
Sbjct: 312 PDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 371

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M  + V PD+  Y  L+  YC    +     + K+M    +  +  TY+ ++ G   
Sbjct: 372 LASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 431

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R   A  L   +   G  +  STY  ++  L +     +A++        D++L+T  
Sbjct: 432 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 491

Query: 281 FGSLGSKLIGLERFNEA 297
           F  +   L+   R +EA
Sbjct: 492 FNIMIGALLKCGRMDEA 508



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 72/157 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y++++   C   +  EA+  +  M   G   + +T+  +++ L +  R  EA  
Sbjct: 241 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK 300

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M +  + PD+  Y  LL  +C +G +  +  +   M    +  D  TY+ L+ G C
Sbjct: 301 IFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCC 360

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            AG+++EA  LL  MV  G      TY  ++    R+
Sbjct: 361 LAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRV 397



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 24/233 (10%)

Query: 76  ITNTENSLSVLSDLCRTLARLDKGFP----------RKSA--YDTLIGRLCKLKKIDEAL 123
           +T T ++ ++L   C    RLD GF           R  A  +  L+  LC  K+  +A+
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 124 RVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR---VSPDLTAYNYL 179
            +V   M E G      +++ +L  L    R +EA  L+ +M + R     PD+ +YN +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 180 LTAYCFKG---NLTATS-----GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           L  +  +G    LTA +      VL  M +  +  D  TY++++ G C +G+ +EA   L
Sbjct: 208 LNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTL 267

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++M  DG      TY+ +M  L + G   +A K       R ++ D   + +L
Sbjct: 268 KKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTL 320



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 79/189 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   C   K+DEA +++  M   G     +T+  +++   R  RM++A  L
Sbjct: 347 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALAL 406

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    VSP++  YN +L          A   +   + +     +  TY+ ++ G C+
Sbjct: 407 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCK 466

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
               +EA  + + +      +   T+  ++GALL+ G   +A           +  D   
Sbjct: 467 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRT 526

Query: 281 FGSLGSKLI 289
           +  +   LI
Sbjct: 527 YSLMAENLI 535



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 1/144 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK    DEALR+   +      L   TF+ ++  L +  RM+EA  L   
Sbjct: 455 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAA 514

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
                + PD+  Y+ +      +G+L     +   MEE    AD+R  +++V    + G 
Sbjct: 515 HSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGD 574

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYA 247
           +  A   L  M+D+    L ++ A
Sbjct: 575 ITRAGTYL-FMIDEKHFSLEASTA 597


>gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 577

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 88/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+   C++++++ A+ +VD+M + G   +A+ ++PI+  L    R +E  G+
Sbjct: 263 PSVVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNALVYNPIIDALAEEGRFKEVSGM 322

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME   +    P ++ YN L+  YC   +    S VLK M          TY+       +
Sbjct: 323 MEYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLKMMISRGFVPTPTTYNYFFRHFSK 382

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +EE   L  +M++ G +    T+  ++  L        AV+       R   +D   
Sbjct: 383 FGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEERLDLAVQISKEMRSRGCDMDLAT 442

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
              L      + RF EA    ++M
Sbjct: 443 STMLIHLFCRMHRFEEAFMEFEDM 466



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 69/165 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y++L+   CK K    A +V+ +M   GF  +  T++      ++   +EE   L
Sbjct: 333 PTISTYNSLVKGYCKAKDPVGASKVLKMMISRGFVPTPTTYNYFFRHFSKFGMIEEGMNL 392

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E   +PD   ++ LL   C +  L     + K+M       D  T   L+   CR
Sbjct: 393 YTKMIESGYTPDRLTFHLLLKMLCEEERLDLAVQISKEMRSRGCDMDLATSTMLIHLFCR 452

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             R EEAF+    M+  G    Y T+  +   L + G   +A K 
Sbjct: 453 MHRFEEAFMEFEDMIQKGIVPQYLTFQRLNDELRKRGMVERARKL 497


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 14/243 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSV 85
           P    Y+ +VN    E  L+     L++ +++ C    +T+N +          E    +
Sbjct: 249 PDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKL 308

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +SD+      L KG  P    Y TLI  LC+  KIDEA  V+ +M E        ++ P+
Sbjct: 309 MSDM------LVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPL 362

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +S L R  +++ A   ++ M      PD+ +YN +L + C  GN      + +K+ E   
Sbjct: 363 ISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGC 422

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +A +Y+ L      +G    A  ++  M+ +G      TY  ++  L R G   QA++
Sbjct: 423 PPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIE 482

Query: 265 FVM 267
            ++
Sbjct: 483 LLV 485



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 4/237 (1%)

Query: 32  EPTSAYYDDLV-NAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90
           EP    Y+ L+ N  G  R L+    ++++  +D C  T  T+  +     +   + +  
Sbjct: 178 EPDVVTYNILIGNFCGRGR-LDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAM 236

Query: 91  RTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + L   L +G  P +  Y+ ++  +CK   +D A   +  +++ G      T++ +L  L
Sbjct: 237 KLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDL 296

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
               + E    LM  M      P+   Y+ L+TA C  G +     VLK M+E+ L  D 
Sbjct: 297 LNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDG 356

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +YD L+   CR G+V+ A   L  M+  G      +Y  ++ +L + G   +A+  
Sbjct: 357 YSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNI 413



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 99/211 (46%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           G P   AY+ +I   CK  ++D A +V+D M + GF    +T++ ++       R++ A 
Sbjct: 142 GKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLAL 201

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            +M+ + +    P +  Y  L+ A   +G +     +L +M    L  D  TY+ +V G 
Sbjct: 202 RVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGM 261

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+ G ++ AF  L R+  +G     STY  ++  LL  G +    K +     +  + + 
Sbjct: 262 CKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNP 321

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             + +L + L    + +EA  +LK M ++ L
Sbjct: 322 ITYSTLITALCRDGKIDEAKNVLKVMKEKAL 352



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +YD LI  LC+  K+D A+  +D M  GG     ++++ IL+ L +    +EA  +
Sbjct: 354 PDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNI 413

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E + E+   P+  +YN L  A    G+     G++ +M    +  D  TY++L+   CR
Sbjct: 414 FEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCR 473

Query: 221 AGRVEEAFVLLRRMVD 236
            G V++A  LL  M +
Sbjct: 474 DGLVDQAIELLVDMFE 489



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 1/165 (0%)

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
           R + +   + R CK  K DE+L  +  M   G+    I    ++      K++E+A  +M
Sbjct: 76  RDTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVM 135

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           E++ E    PD+ AYN +++ +C    +   S VL +M++     D  TY+ L+   C  
Sbjct: 136 EIL-EKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGR 194

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           GR++ A  ++ +++ D       TY  ++ A +  G   +A+K +
Sbjct: 195 GRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLL 239



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 114/259 (44%), Gaps = 2/259 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +PT   Y  L+ A   +  ++    LL++           T+N + N      +L     
Sbjct: 213 KPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFE 272

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+R+ K       S Y+ L+  L    K +   +++  M   G   + IT+  +++ L 
Sbjct: 273 FLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALC 332

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R  +++EA  +++VMKE  ++PD  +Y+ L++A C +G +      L  M       D  
Sbjct: 333 RDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDIL 392

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           +Y++++   C+ G  +EA  +  ++ + G      +Y  + GAL   G   +A+  ++  
Sbjct: 393 SYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEM 452

Query: 270 GGRDIKLDTELFGSLGSKL 288
               I  D   + SL S L
Sbjct: 453 LSNGIDPDEITYNSLISCL 471



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 1/167 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y++++  LCK    DEAL + + + E G   +A +++ +   L        A G
Sbjct: 388 LPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALG 447

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGA 218
           ++  M    + PD   YN L++  C  G +     +L  M E EK      +Y+ ++LG 
Sbjct: 448 MILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGL 507

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           C+  R+ +A  +L  MV++G     +TY  ++  +   G+   A++ 
Sbjct: 508 CKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMEL 554



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 39/221 (17%)

Query: 91  RTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + L R+ K GF P    Y+ LIG  C   ++D ALRV+D + +     + IT+  ++   
Sbjct: 167 KVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEAT 226

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE------- 201
                ++EA  L++ M    + PD   YN ++   C +G L      L ++ +       
Sbjct: 227 ITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGV 286

Query: 202 -------------------EKLGAD---------ARTYDALVLGACRAGRVEEAFVLLRR 233
                              EKL +D           TY  L+   CR G+++EA  +L+ 
Sbjct: 287 STYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKV 346

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGR 272
           M +   +    +Y  ++ AL R G    A++F+  M+ GG 
Sbjct: 347 MKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGH 387



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL G L        AL ++  M   G     IT++ ++S L R   +++A  L
Sbjct: 424 PNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIEL 483

Query: 161 M-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + ++ +  +  P + +YN +L   C    +     VL  M  E    +  TY  L+ G  
Sbjct: 484 LVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIG 543

Query: 220 RAGRVEEAFVLLRRMVD 236
            AG   +A  L   +V+
Sbjct: 544 FAGWRYDAMELANLLVN 560


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 33/279 (11%)

Query: 1   MSLLRKLPTKFLIPQSVLVT-------------------RSFTKSGAFPDEPTSAYYDDL 41
           M+LL K+    +IP  +  T                       ++G  PDE   A   D 
Sbjct: 402 MALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDA 461

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL--SDLCRTLAR--LD 97
           +  AG  R  E   +++ K         A T  + T   +  S    +D   TL    +D
Sbjct: 462 LCKAG--RAEEAYSFIVRK-------GVALTKVYYTTLIDGFSKAGNTDFAATLIERMID 512

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +G  P    Y  L+  LCK K+++EAL ++D M+  G   +   +  ++  + R  + + 
Sbjct: 513 EGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDH 572

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  +   M      P  T Y   + +YC +G L     ++ KME E +  D  TY+ L+ 
Sbjct: 573 AKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILID 632

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           G    G ++ AF  L+RMV       Y TY  ++  LL+
Sbjct: 633 GCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLK 671



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 3/210 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y ++I   CK  K+D AL V+ +M   G   +A T++ ++  L + K++ +A  L
Sbjct: 345 PNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMAL 404

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  + P++  Y  LL   C + +      + + ME+  L  D   Y  L    C+
Sbjct: 405 LTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK 464

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR EEA+  + R    G ++    Y  ++    + G    A   +          D+  
Sbjct: 465 AGRAEEAYSFIVR---KGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT 521

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L   +R NEA  IL +M+ R +K
Sbjct: 522 YSVLLHALCKQKRLNEALPILDQMSLRGIK 551



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 1/205 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI  LC  K + +AL +  +M   G   +   F  ++S L +  R+ +A  L + M
Sbjct: 140 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 199

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V P +  YN ++  Y   G +     + + ME+     D  TY+ L+ G C   + 
Sbjct: 200 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KT 258

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           EEA  LL   V +G +    T+ +++        +  A++          KLD ++FG L
Sbjct: 259 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 318

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            + LI  +R  EA  +L E++   L
Sbjct: 319 INSLIKKDRLKEAKELLNEISANGL 343



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 116/303 (38%), Gaps = 76/303 (25%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTL 93
           T  YY  L++      + +    L+ +   + C   + T++ +         L  LC+  
Sbjct: 483 TKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL---------LHALCKQ- 532

Query: 94  ARLDKGFPRKS------------AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            RL++  P               AY  LI  + +  K D A R+ + M   G   SA T+
Sbjct: 533 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 592

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA------------------- 182
              ++   +  R+E+A  L+  M+   V+PD+  YN L+                     
Sbjct: 593 TVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVG 652

Query: 183 ---------YCF------KGNL-----TATSG------------VLKKMEEEKLGADART 210
                    YC       KGNL       TSG            +L++M +  L     T
Sbjct: 653 ASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTT 712

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-- 268
           Y +L+ G C+AGR+EEA +LL  M   G S     Y  ++       ++ +A+ FV +  
Sbjct: 713 YSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMS 772

Query: 269 -CG 270
            CG
Sbjct: 773 ECG 775



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 55  RYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGR 112
           R L +   ++    +  T+N +    + L  ++D  +    ++K    P    Y+TLI  
Sbjct: 193 RLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYG 252

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC  +K +EA  +++   + GF  + +TF  +++     ++ ++A  +   M   +   D
Sbjct: 253 LCD-QKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLD 311

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           L  +  L+ +   K  L     +L ++    L  +  TY +++ G C++G+V+ A  +L+
Sbjct: 312 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 371

Query: 233 RMVDDGQSVLYSTYAHVMGALLR 255
            M  DG      TY  +M  L++
Sbjct: 372 MMERDGCQPNAWTYNSLMYGLVK 394



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 61/149 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y +LI   CK  +++EA  ++D M   G   +   +  ++      K  E+A   
Sbjct: 708 PTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSF 767

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M E    P L +Y  L+   C +G+      +   + E     D   +  L  G  +
Sbjct: 768 VSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLK 827

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
           AG V+  F +L  M      +   TYA V
Sbjct: 828 AGYVDICFQMLSIMEKRYCCISSQTYALV 856



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 24/248 (9%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           K G  P+  T   Y  L+     E D +    L     +          N +   E++ +
Sbjct: 410 KDGIIPNVIT---YTTLLQGQCDEHDFDNAFRLFEMMEQ----------NGLKPDEHAYA 456

Query: 85  VLSD-LCRTLARLDKGFP---------RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           VL+D LC+   R ++ +           K  Y TLI    K    D A  +++ M + G 
Sbjct: 457 VLTDALCKA-GRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGC 515

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
              + T+  +L  L + KR+ EA  +++ M    +   + AY  L+     +G       
Sbjct: 516 TPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKR 575

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +  +M        A TY   +   C+ GR+E+A  L+ +M  +G +    TY  ++    
Sbjct: 576 MYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 635

Query: 255 RLGYYAQA 262
            +GY  +A
Sbjct: 636 HMGYIDRA 643



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 90/238 (37%), Gaps = 5/238 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  Y+ L+     ++ L     LL K  +D       T+  +   +       +  R
Sbjct: 379 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 438

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               +++    P + AY  L   LCK  + +EA   +      G  L+ + +  ++   +
Sbjct: 439 LFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI---VRKGVALTKVYYTTLIDGFS 495

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +    + A  L+E M +   +PD   Y+ LL A C +  L     +L +M    +     
Sbjct: 496 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 555

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
            Y  L+    R G+ + A  +   M   G     +TY   + +  + G    A   ++
Sbjct: 556 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLIL 613



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 5/191 (2%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y+T+I   CK   +  A R   ++ EGG      T + ++    R   + +
Sbjct: 62  DGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRK 121

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L  +M  +    +  +Y  L+   C    +     +   M+ +    + R +  L+ 
Sbjct: 122 ACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLIS 181

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-----CGG 271
           G C++GRV +A +L   M  +G      TY  ++    +LG    A+K   +     C  
Sbjct: 182 GLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHP 241

Query: 272 RDIKLDTELFG 282
            D   +T ++G
Sbjct: 242 DDWTYNTLIYG 252



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 90/206 (43%), Gaps = 1/206 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I    KL ++++AL++ ++M + G      T++ ++  L   ++ EEA  L
Sbjct: 206 PSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEEL 264

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +    +   +P +  +  L+  YC          +  KM   K   D + +  L+    +
Sbjct: 265 LNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIK 324

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R++EA  LL  +  +G      TY  ++    + G    A++ + +      + +   
Sbjct: 325 KDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWT 384

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + SL   L+  ++ ++A  +L +M K
Sbjct: 385 YNSLMYGLVKDKKLHKAMALLTKMQK 410



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 25/222 (11%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R + +  +   +P++  Y   +N+   E  LE    L+ K  R+       T+N      
Sbjct: 575 RMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN------ 628

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
               +L D C  +  +D+ F   S    ++G  C+       L +  ++ +G        
Sbjct: 629 ----ILIDGCGHMGYIDRAF---STLKRMVGASCEPNYWTYCLLLKHLL-KGNLAY---- 676

Query: 141 FHPILSVLTRGK----RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
              + SV T G      ++  W L+E M +  ++P +T Y+ L+  +C  G L     +L
Sbjct: 677 ---VRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLL 733

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             M  + L  +   Y  L+   C     E+A   +  M + G
Sbjct: 734 DHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECG 775


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 16/276 (5%)

Query: 38  YDDLVNAAGHERDL---ETVRYLLNK---RARDCCFNTANTFNFIT-NTENSLSVLSDLC 90
           Y  LV+    ER +   E V  ++ K   RA +  + T    +F+  N+E +L +LS++ 
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMK 425

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
                LD      S Y  LI  LC + K+DEA  ++  M E G   + I +  ++    +
Sbjct: 426 NKGLELDI-----SLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFK 480

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++ EA  +++ + +    P++  Y  L+   C  G++        KM +  L  + + 
Sbjct: 481 SGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQA 540

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVMV 268
           Y ALV G C+ G + EA  L   MV  G S+    Y  ++   L+ G  + A A+K  M+
Sbjct: 541 YTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMI 600

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             G  ++LD   +    S    L    EA  +  EM
Sbjct: 601 DSG--LQLDLFCYTCFISGFCNLNMMPEAREVFSEM 634



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 110/249 (44%), Gaps = 35/249 (14%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    +++LI    K  ++DE  ++V+ M   G     +T++ +++   +  RME A+G
Sbjct: 220 LPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYG 279

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               MK   V  ++  ++  + A+C +G +     +  +M    +  +  TY  L+ G C
Sbjct: 280 YFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTC 339

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL------------LRL----GYYAQAV 263
           +AGR+++A VLL  MV  G  +   TY  ++  L            LR+    G  A  +
Sbjct: 340 KAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL 399

Query: 264 KFVMVCGG-------------------RDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  +  G                   + ++LD  L+G+L   L  + + +EA  +L +M
Sbjct: 400 LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM 459

Query: 305 NKRDLKMGF 313
           ++  L+  +
Sbjct: 460 DESGLEPNY 468



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 89/206 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++    K  K+ EA+ ++  + + GF  + IT+  ++  L +   ++EA   
Sbjct: 466 PNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISH 525

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+++ + P++ AY  L+   C  G L     +  +M  + +  D   Y AL+ G  +
Sbjct: 526 FNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK 585

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + +AF L  +M+D G  +    Y   +     L    +A +      G  I  D  +
Sbjct: 586 QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAV 645

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  L SK   L    EA  +  EM +
Sbjct: 646 YNCLISKYQKLGNLEEAISLQDEMER 671



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 80/161 (49%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI   CK  ++D+A+ ++D M   G  L+ +T+  ++  L + +++ EA  ++ +M+
Sbjct: 331 YTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMME 390

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  V  +   Y  L+  +    N     G+L +M+ + L  D   Y AL+ G C   +++
Sbjct: 391 KAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLD 450

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           EA  LL +M + G    Y  Y  +M A  + G   +A+  +
Sbjct: 451 EAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAML 491



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 4/208 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  L+  LCK +K+ EA  V+ +M + G   + + +  ++      K  E+A GL+  MK
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMK 425

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +  D++ Y  L+   C    L     +L KM+E  L  +   Y  ++    ++G+V 
Sbjct: 426 NKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVP 485

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD--TELFGS 283
           EA  +L++++D G      TY  ++  L + G   +A+        RD+ LD   + + +
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFN--KMRDLGLDPNVQAYTA 543

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLKM 311
           L   L      NEA  +  EM  + + +
Sbjct: 544 LVDGLCKNGCLNEAVQLFNEMVHKGMSL 571


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 119/273 (43%), Gaps = 6/273 (2%)

Query: 39  DDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK 98
           + L+ + G    +E + ++  K   +    T  T+NF+ N   S   +    R    ++ 
Sbjct: 191 NSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMES 250

Query: 99  GF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           G   P    Y+T+I   CK  +  +AL  + +M   G     IT+  ++           
Sbjct: 251 GRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSS 310

Query: 157 AWGLMEVMKE--IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
              L + M E  ++V P   A++ ++   C +G L     V + M  +    +   Y  L
Sbjct: 311 CVALYQEMDEKGLQVPPH--AFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVL 368

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G  + G VE+A  LL RM+D+G +    TY+ V+  L + G   +A+ +   C    +
Sbjct: 369 IDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGL 428

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            +++  + SL   L    R +EA  + +EM+++
Sbjct: 429 AINSMFYSSLIDGLGKAGRVDEAERLFEEMSEK 461



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 90/194 (46%), Gaps = 14/194 (7%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           V+  LC+   +L++G+            P  + Y  LI    K   +++A+R++  M + 
Sbjct: 333 VIGGLCKE-GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDE 391

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           GF    +T+  +++ L +  R+EEA    +  +   ++ +   Y+ L+      G +   
Sbjct: 392 GFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEA 451

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM-VDDGQSVLYSTYAHVMG 251
             + ++M E+    D+  Y+AL+    + G+V+EA  L +RM  ++G      TY  ++ 
Sbjct: 452 ERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILIS 511

Query: 252 ALLRLGYYAQAVKF 265
            + +     +A+K 
Sbjct: 512 GMFKEHRNEEALKL 525



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 3/172 (1%)

Query: 97  DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRM 154
           +KG  R S  Y+ LI    K  K+DEAL +   M E  G   +  T+  ++S + +  R 
Sbjct: 460 EKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRN 519

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           EEA  L ++M +  ++P       L T  C  G +     +L ++    +  DA   D +
Sbjct: 520 EEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDELAPMGVILDAACED-M 578

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +   C+AGR++EA  L   + + G+ V       ++ AL ++G    A+K +
Sbjct: 579 INTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKLM 630



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 84/206 (40%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y +L+  L   K +D    +   + +  F ++    + ++    +   +EE   +   M
Sbjct: 154 CYVSLVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKM 213

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           KE  + P L  YN+L+        + +   V + ME  ++  D  TY+ ++ G C+AG+ 
Sbjct: 214 KENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQT 273

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++A   LR M   G      TY  ++ A      ++  V        + +++    F  +
Sbjct: 274 QKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLV 333

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
              L    + NE   + + M ++  K
Sbjct: 334 IGGLCKEGKLNEGYAVFENMIRKGSK 359


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 1/142 (0%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG-FGLSAITFHPILSVLTRGKRMEE 156
           K  P       L+  LCK ++++EA  +++ M E G    S +T+  ++  L +  R+++
Sbjct: 252 KCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDD 311

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+ +++ M+     PD+  Y  ++ A+C  G L     + ++M E    +D   Y+ L+ 
Sbjct: 312 AYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIR 371

Query: 217 GACRAGRVEEAFVLLRRMVDDG 238
           G CRA +V+EA  ++  M   G
Sbjct: 372 GYCRAAKVDEAIAMIEEMAGRG 393



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 12/239 (5%)

Query: 22  SFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
              +SG  PD+ T +     L  A   E+  +    +L+K         A   N      
Sbjct: 74  QMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAG 133

Query: 81  NSLSVLSDLCRTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
                LS     L R  KG    P  S Y TLI  LCK  + +EA  + ++ A  G    
Sbjct: 134 RIDQALS-----LMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMAA--GDVQD 186

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            I +   +S L +  +++EA  +   M E   +PD  +YN ++ + C    ++    ++ 
Sbjct: 187 VIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMD 246

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG-QSVLYSTYAHVMGALLR 255
           +  E K          LV G C++ RVEEA V+L RM++ G ++    TY+ V+  L +
Sbjct: 247 QAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCK 305



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 4/173 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +IG LCK+ K+D A    + M + G     +T+  ++  L +  + E+   +
Sbjct: 47  PDAFLYTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQI 106

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M     SP+L  Y  ++  YC  G +     ++++++          Y  L+ G C+
Sbjct: 107 FEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCK 166

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY--AQAVKFVMVCGG 271
             R EEA  L      D Q V+   Y   +  L + G    A+AV   M+  G
Sbjct: 167 HDRHEEARELFEMAAGDVQDVI--VYTSFISGLCKAGKLDEAKAVHVKMIEAG 217



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 117/280 (41%), Gaps = 38/280 (13%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNA-AGHERDLETVRYLLNKRARDCCFNTAN 71
           I Q++ + R    +G     P+ + Y  L++    H+R  E  R L    A D       
Sbjct: 135 IDQALSLMRRLKGTGR---SPSGSLYSTLIDGLCKHDRH-EEARELFEMAAGD------- 183

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKI 119
             + I  T    S +S LC+   +LD+              P   +Y+ +I  LCK  ++
Sbjct: 184 VQDVIVYT----SFISGLCKA-GKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRV 238

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRG----KRMEEAWGLMEVMKEI-RVSPDLT 174
            EA  ++D   E       +   P+ +VL  G    +R+EEA  ++E M E    +P + 
Sbjct: 239 SEAKELMDQAME----RKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVV 294

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            Y+ ++   C    L     VL+KM       D  TY A++   C+ GR++EA  L +RM
Sbjct: 295 TYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRM 354

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
            + G +     Y  ++    R     +A+  +    GR I
Sbjct: 355 HERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 1/182 (0%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   + +TF  ++  L       +A  +   M +++V PD   Y  ++   C    
Sbjct: 5   MKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINK 64

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L   +   ++M +     D  TY  LV    +A + E+   +   M+  G S    TYA 
Sbjct: 65  LDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYAT 124

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           V+    + G   QA+  +    G        L+ +L   L   +R  EA  +  EM   D
Sbjct: 125 VVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELF-EMAAGD 183

Query: 309 LK 310
           ++
Sbjct: 184 VQ 185


>gi|242075674|ref|XP_002447773.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
 gi|241938956|gb|EES12101.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
          Length = 380

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 99/209 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ LI  LC  +++DEA  V+D M E G   +  ++  IL    +  R+ EA  L
Sbjct: 147 PDAATYNCLIWMLCDSQRLDEAWGVLDSMLEEGICPTVRSYTAILHGYCKQGRVLEAERL 206

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M ++  +PD+ +Y+ L+   C  G       +L + E +    +A TY+  +   CR
Sbjct: 207 VDTMIQVGCAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCR 266

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G ++EAF  +  M+  G S+   T   +   L R   +++AV  +      +  +D   
Sbjct: 267 MGFLDEAFRQVDVMLSRGVSMTIETVNILFDCLCRDSMFSEAVSLLEYSEELNWNVDVFC 326

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + +L S+L     F     +L ++ K+ +
Sbjct: 327 YNTLMSRLCDAGDFARVLKLLVDLVKKGI 355



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 120/289 (41%), Gaps = 24/289 (8%)

Query: 25  KSGAFPDEPTSAYYDDLVNA---AG-HERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
            +GA P   T   Y+ L++A   AG H+  L   R L           TA  F  + ++ 
Sbjct: 38  PAGAVPAALTPTAYNALMSAYSRAGRHDEVLRLFRSLPFS-------PTAPLFTTLISSL 90

Query: 81  NSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALR------VVDIMAEGG 133
            +    S      + L  G  P  SA+  L      LK ID A            MA  G
Sbjct: 91  AASGSKSAALDAFSLLASGLGPTTSAFTAL------LKSIDAAPSESVYRAFFGTMAAMG 144

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
               A T++ ++ +L   +R++EAWG+++ M E  + P + +Y  +L  YC +G +    
Sbjct: 145 CAPDAATYNCLIWMLCDSQRLDEAWGVLDSMLEEGICPTVRSYTAILHGYCKQGRVLEAE 204

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            ++  M +     D  +Y  L+ G CR G   +   +L      G +    TY   M AL
Sbjct: 205 RLVDTMIQVGCAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSAL 264

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
            R+G+  +A + V V   R + +  E    L   L     F+EA  +L+
Sbjct: 265 CRMGFLDEAFRQVDVMLSRGVSMTIETVNILFDCLCRDSMFSEAVSLLE 313



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 1/127 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KG+ P    Y+  +  LC++  +DEA R VD+M   G  ++  T + +   L R     E
Sbjct: 248 KGWTPNAVTYNIYMSALCRMGFLDEAFRQVDVMLSRGVSMTIETVNILFDCLCRDSMFSE 307

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L+E  +E+  + D+  YN L++  C  G+      +L  + ++ +G D  ++   + 
Sbjct: 308 AVSLLEYSEELNWNVDVFCYNTLMSRLCDAGDFARVLKLLVDLVKKGIGPDMFSFTIAIR 367

Query: 217 GACRAGR 223
             CRAG+
Sbjct: 368 SLCRAGK 374



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 68/159 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  LI  LC++ +  +  R++      G+  +A+T++  +S L R   ++EA+  
Sbjct: 217 PDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGFLDEAFRQ 276

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++VM    VS  +   N L    C     +    +L+  EE     D   Y+ L+   C 
Sbjct: 277 VDVMLSRGVSMTIETVNILFDCLCRDSMFSEAVSLLEYSEELNWNVDVFCYNTLMSRLCD 336

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           AG       LL  +V  G      ++   + +L R G +
Sbjct: 337 AGDFARVLKLLVDLVKKGIGPDMFSFTIAIRSLCRAGKF 375


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 1/154 (0%)

Query: 97  DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG FP    Y +L+  LC   + +EA R+   M + G     +TF  ++  L +  +++
Sbjct: 281 EKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVK 340

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA GL ++M +  V P    YN L+  YC  G +     +   M  ++   DA +Y  L+
Sbjct: 341 EASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILM 400

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
              C+   V  A +L R M+D G      TY+ V
Sbjct: 401 KAYCKDSEVHGAMILYREMMDRGIQPTVITYSKV 434



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 7/174 (4%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KG+ P    +  L+  LC   KI EA+RV  IM       SAIT   ++S L R    
Sbjct: 169 LRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNT 228

Query: 155 EEAWGLMEVMKE------IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
             A  L E M        I   P + +Y+ ++ + C  G +        +M+E+ +  + 
Sbjct: 229 CNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNV 288

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            TY +L+ G C A   EEA  L   MVD G      T++ ++GAL ++G   +A
Sbjct: 289 VTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEA 342



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 10/164 (6%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  +I  LCK   ++ A      M E G   + +T+  +L  L      EEA  L
Sbjct: 251 PTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRL 310

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + PD+  ++ L+ A C  G +   SG+   M +  +    RTY+ L+ G C 
Sbjct: 311 FIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCL 370

Query: 221 AGRVEEAFVLLRRMV------DDGQ-SVLYSTY---AHVMGALL 254
           AG V+E   +   MV      D G  S+L   Y   + V GA++
Sbjct: 371 AGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMI 414



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 70/163 (42%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+  +  LCK   + EAL V   +    F  +   F+ +++ + R +++E AW L   
Sbjct: 457 SIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNR 516

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +    + PD+  Y  ++   C  G       +  +MEE+    +  T++ L+ G C    
Sbjct: 517 LCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSE 576

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             +   LL +M     S   ST   VM  LL+   Y + +  +
Sbjct: 577 RPKIVELLHKMAARKLSPDASTLLIVMDILLKDENYHECLNLL 619



 Score = 44.3 bits (103), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  L+   CK  ++  A+ +   M + G   + IT+       ++     + +G ++  
Sbjct: 395 SYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITY-------SKVGDARKLFGEIQFQ 447

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
             +  S   + YN  L   C  G ++    V   +E  K  ++   +++L+ G CR+ ++
Sbjct: 448 DMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKL 507

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           E A+ L  R+ ++       TY  ++  L ++G   +A
Sbjct: 508 EIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKA 545



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 82/210 (39%), Gaps = 6/210 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S ++ L G L K K+    + +   M   G   + I+ + +L+ L   KR+ E + +
Sbjct: 105 PALSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVV 164

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             ++      P+   +  L+   C +G +     V K M        A T   L+ G CR
Sbjct: 165 FGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCR 224

Query: 221 AGRVEEAFVLLRRMVDDGQSV------LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
            G    A  L   M++              +Y+ ++ +L + G   +A +F +    + I
Sbjct: 225 TGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGI 284

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +   + SL   L     + EA  +  EM
Sbjct: 285 FPNVVTYTSLLHGLCSASEWEEAKRLFIEM 314


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 14/236 (5%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           ++G  PDE   A   D +  AG  R  E   +++ K         A T  + T   +  S
Sbjct: 560 QNGLKPDEHAYAVLTDALCKAG--RAEEAYSFIVRK-------GVALTKVYYTTLIDGFS 610

Query: 85  VL--SDLCRTLAR--LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
               +D   TL    +D+G  P    Y  L+  LCK K+++EAL ++D M+  G   +  
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 670

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
            +  ++  + R  + + A  +   M      P  T Y   + +YC +G L     ++ KM
Sbjct: 671 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKM 730

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           E E +  D  TY+ L+ G    G ++ AF  L+RMV       Y TY  ++  LL+
Sbjct: 731 EREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLK 786



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 3/210 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y ++I   CK  K+D AL V+ +M   G   +A T++ ++  L + K++ +A  L
Sbjct: 460 PNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMAL 519

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  + P++  Y  LL   C + +      + + ME+  L  D   Y  L    C+
Sbjct: 520 LTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK 579

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR EEA+  + R    G ++    Y  ++    + G    A   +          D+  
Sbjct: 580 AGRAEEAYSFIVR---KGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT 636

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L   +R NEA  IL +M+ R +K
Sbjct: 637 YSVLLHALCKQKRLNEALPILDQMSLRGIK 666



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 1/205 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI  LC  K + +AL +  +M   G   +   F  ++S L +  R+ +A  L + M
Sbjct: 255 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V P +  YN ++  Y   G +     + + ME+     D  TY+ L+ G C   + 
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KT 373

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           EEA  LL   V +G +    T+ +++        +  A++          KLD ++FG L
Sbjct: 374 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 433

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            + LI  +R  EA  +L E++   L
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGL 458



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 116/303 (38%), Gaps = 76/303 (25%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTL 93
           T  YY  L++      + +    L+ +   + C   + T++ +         L  LC+  
Sbjct: 598 TKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL---------LHALCKQ- 647

Query: 94  ARLDKGFPRKS------------AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            RL++  P               AY  LI  + +  K D A R+ + M   G   SA T+
Sbjct: 648 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 707

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA------------------- 182
              ++   +  R+E+A  L+  M+   V+PD+  YN L+                     
Sbjct: 708 TVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVG 767

Query: 183 ---------YCF------KGNL-----TATSG------------VLKKMEEEKLGADART 210
                    YC       KGNL       TSG            +L++M +  L     T
Sbjct: 768 ASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTT 827

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-- 268
           Y +L+ G C+AGR+EEA +LL  M   G S     Y  ++       ++ +A+ FV +  
Sbjct: 828 YSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMS 887

Query: 269 -CG 270
            CG
Sbjct: 888 ECG 890



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 55  RYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGR 112
           R L +   ++    +  T+N +    + L  ++D  +    ++K    P    Y+TLI  
Sbjct: 308 RLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYG 367

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC  +K +EA  +++   + GF  + +TF  +++     ++ ++A  +   M   +   D
Sbjct: 368 LCD-QKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLD 426

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           L  +  L+ +   K  L     +L ++    L  +  TY +++ G C++G+V+ A  +L+
Sbjct: 427 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 486

Query: 233 RMVDDGQSVLYSTYAHVMGALLR 255
            M  DG      TY  +M  L++
Sbjct: 487 MMERDGCQPNAWTYNSLMYGLVK 509



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 61/149 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y +LI   CK  +++EA  ++D M   G   +   +  ++      K  E+A   
Sbjct: 823 PTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSF 882

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M E    P L +Y  L+   C +G+      +   + E     D   +  L  G  +
Sbjct: 883 VSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLK 942

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
           AG V+  F +L  M      +   TYA V
Sbjct: 943 AGYVDICFQMLSIMEKRYCCISSQTYALV 971



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 11/199 (5%)

Query: 74  NFITNTENSLSVLSD-LCRTLARLDKGFP---------RKSAYDTLIGRLCKLKKIDEAL 123
           N +   E++ +VL+D LC+   R ++ +           K  Y TLI    K    D A 
Sbjct: 561 NGLKPDEHAYAVLTDALCKA-GRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAA 619

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +++ M + G    + T+  +L  L + KR+ EA  +++ M    +   + AY  L+   
Sbjct: 620 TLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEM 679

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
             +G       +  +M        A TY   +   C+ GR+E+A  L+ +M  +G +   
Sbjct: 680 LREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDV 739

Query: 244 STYAHVMGALLRLGYYAQA 262
            TY  ++     +GY  +A
Sbjct: 740 VTYNILIDGCGHMGYIDRA 758



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 90/238 (37%), Gaps = 5/238 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  Y+ L+     ++ L     LL K  +D       T+  +   +       +  R
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 553

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               +++    P + AY  L   LCK  + +EA   +      G  L+ + +  ++   +
Sbjct: 554 LFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI---VRKGVALTKVYYTTLIDGFS 610

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +    + A  L+E M +   +PD   Y+ LL A C +  L     +L +M    +     
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 670

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
            Y  L+    R G+ + A  +   M   G     +TY   + +  + G    A   ++
Sbjct: 671 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLIL 728



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 5/191 (2%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y+T+I   CK   +  A R   ++ EGG      T + ++    R   + +
Sbjct: 177 DGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRK 236

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L  +M  +    +  +Y  L+   C    +     +   M+ +    + R +  L+ 
Sbjct: 237 ACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLIS 296

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-----CGG 271
           G C++GRV +A +L   M  +G      TY  ++    +LG    A+K   +     C  
Sbjct: 297 GLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHP 356

Query: 272 RDIKLDTELFG 282
            D   +T ++G
Sbjct: 357 DDWTYNTLIYG 367



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 90/206 (43%), Gaps = 1/206 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I    KL ++++AL++ ++M + G      T++ ++  L   ++ EEA  L
Sbjct: 321 PSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEEL 379

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +    +   +P +  +  L+  YC          +  KM   K   D + +  L+    +
Sbjct: 380 LNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIK 439

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R++EA  LL  +  +G      TY  ++    + G    A++ + +      + +   
Sbjct: 440 KDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWT 499

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + SL   L+  ++ ++A  +L +M K
Sbjct: 500 YNSLMYGLVKDKKLHKAMALLTKMQK 525



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 25/222 (11%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R + +  +   +P++  Y   +N+   E  LE    L+ K  R+       T+N      
Sbjct: 690 RMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN------ 743

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
               +L D C  +  +D+ F   S    ++G  C+       L +  ++ +G        
Sbjct: 744 ----ILIDGCGHMGYIDRAF---STLKRMVGASCEPNYWTYCLLLKHLL-KGNLAY---- 791

Query: 141 FHPILSVLTRGK----RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
              + SV T G      ++  W L+E M +  ++P +T Y+ L+  +C  G L     +L
Sbjct: 792 ---VRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLL 848

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             M  + L  +   Y  L+   C     E+A   +  M + G
Sbjct: 849 DHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECG 890


>gi|334182559|ref|NP_001184987.1| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190929|gb|AEE29050.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 798

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 8/234 (3%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           A  F+ +     +  V+ D+      LDKG  P    Y  L+   C+L  ID  L ++  
Sbjct: 299 AKGFHLLGMISGAWEVIRDM------LDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKD 352

Query: 129 MAEGGFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           M   GF L S I    +LS L +  R++EA  L   MK   +SPDL AY+ ++   C  G
Sbjct: 353 MLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLG 412

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
                  +  +M ++++  ++RT+ AL+LG C+ G + EA  LL  ++  G+++    Y 
Sbjct: 413 KFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYN 472

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
            V+    + G   +A++   V     I      F SL       +   EA  IL
Sbjct: 473 IVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 526



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 96/219 (43%), Gaps = 12/219 (5%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I    K   I+EAL +  ++ E G   S  TF+ ++    + + + EA  +++V+K
Sbjct: 471 YNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIK 530

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++P + +Y  L+ AY   GN  +   + ++M+ E +     TY  +  G CR  + E
Sbjct: 531 LYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHE 590

Query: 226 EAFVLLRR------------MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
               +LR             M  +G      TY  ++  L R+ + + A  F+ +   R+
Sbjct: 591 NCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRN 650

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
           +   +  +  L   L       +A+  +  + ++++ + 
Sbjct: 651 LDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLS 689



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 8/193 (4%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N +  L +L D+      L +GF   S      ++  LCK  +IDEAL + + M   G  
Sbjct: 342 NIDMGLVLLKDM------LSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLS 395

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
              + +  ++  L +  + + A  L + M + R+ P+   +  LL   C KG L     +
Sbjct: 396 PDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSL 455

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L  +       D   Y+ ++ G  ++G +EEA  L + +++ G +   +T+  ++    +
Sbjct: 456 LDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCK 515

Query: 256 LGYYAQAVKFVMV 268
               A+A K + V
Sbjct: 516 TQNIAEARKILDV 528



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           RT    D G P   ++++++   CKL  +D A      + + G   S  + + +++ L  
Sbjct: 211 RTSEWKDIG-PSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCL 269

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + EA  L   M +  V PD   YN L   +   G ++    V++ M ++ L  D  T
Sbjct: 270 VGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVIT 329

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDG 238
           Y  L+ G C+ G ++   VLL+ M+  G
Sbjct: 330 YTILLCGQCQLGNIDMGLVLLKDMLSRG 357



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + +++LI   CK + I EA +++D++   G   S +++  ++         +    L
Sbjct: 501 PSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDEL 560

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK------------MEEEKLGADA 208
              MK   + P    Y+ +    C        + VL++            ME E +  D 
Sbjct: 561 RREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQ 620

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+ ++   CR   +  AFV L  M         +TY  ++ +L   GY  +A  F+  
Sbjct: 621 ITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIY- 679

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
                         SL  + + L +F     I     K D +M  KL
Sbjct: 680 --------------SLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKL 712



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 110/244 (45%), Gaps = 8/244 (3%)

Query: 16  SVLVTRSFTKSGAFPD-EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA-NTF 73
            V++ +   + G F   E T   +D L+  +   R ++   Y+L K+ +D   N +  ++
Sbjct: 104 QVILEQLLQEEGTFRKWESTGLVWDMLLFLSSRLRMVDDSLYIL-KKMKDQNLNVSTQSY 162

Query: 74  NFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           N +         + D+ + +   DK    +  Y T++  LC+ +K+++A+  +       
Sbjct: 163 NSVLYHFRETDKMWDVYKEIK--DKN---EHTYSTVVDGLCRQQKLEDAVLFLRTSEWKD 217

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
            G S ++F+ I+S   +   ++ A      + +  + P + ++N L+   C  G++    
Sbjct: 218 IGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEAL 277

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            +   M +  +  D+ TY+ L  G    G +  A+ ++R M+D G S    TY  ++   
Sbjct: 278 ELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQ 337

Query: 254 LRLG 257
            +LG
Sbjct: 338 CQLG 341



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L +G+  ++    L  R+   +K  + LR  D+ +EG      IT++ I+  L R K + 
Sbjct: 583 LCRGWKHENCNHVLRERI--FEKCKQGLR--DMESEG-IPPDQITYNTIIQYLCRVKHLS 637

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A+  +E+MK   +      YN L+ + C  G +      +  ++E+ +      Y  L+
Sbjct: 638 GAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLI 697

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              C  G  E A  L  +++  G +V    Y+ V+  L R
Sbjct: 698 KAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCR 737



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 1/168 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    +  L+  LC+   + EA  ++D +   G  L  + ++ ++    +   +EEA  
Sbjct: 430 LPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALE 489

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L +V+ E  ++P +  +N L+  YC   N+     +L  ++   L     +Y  L+    
Sbjct: 490 LFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYA 549

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             G  +    L R M  +G      TY+ +   L R G+  +    V+
Sbjct: 550 NCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCR-GWKHENCNHVL 596


>gi|224098467|ref|XP_002334553.1| predicted protein [Populus trichocarpa]
 gi|222873070|gb|EEF10201.1| predicted protein [Populus trichocarpa]
          Length = 149

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 67/135 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TLI  LCK ++++EAL +   M       +  T+  ++  L    R +EA  L+  M
Sbjct: 12  TYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEM 71

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
             + + P++  +N L+  +C +G + A  GVLK M E  +  D  TY++L+ G      V
Sbjct: 72  TSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEV 131

Query: 225 EEAFVLLRRMVDDGQ 239
            EA  L   M+  GQ
Sbjct: 132 VEARKLFDVMITKGQ 146



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 56/122 (45%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M E G  L+ +T+  ++  L + +R+ EA  +   MK   +SP +  Y  L+   C    
Sbjct: 1   MEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSR 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
               S +L +M    +  +  T++ LV   C+ G+V  A  +L+ M + G      TY  
Sbjct: 61  WKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNS 120

Query: 249 VM 250
           +M
Sbjct: 121 LM 122



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LC   +  EA  +++ M       + +TF+ ++    +  ++  A G+
Sbjct: 43  PTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGV 102

Query: 161 MEVMKEIRVSPDLTAYNYLLTAY 183
           ++ M E+ V PD+  YN L+  Y
Sbjct: 103 LKTMTEMGVEPDVVTYNSLMYGY 125


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 1/209 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ +I   CK+K++D+AL +   M    F    I F+ IL    + K    A  L
Sbjct: 271 PDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFP-PIIQFNKILDSFAKMKHYSTAVSL 329

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              ++   + PDL   N L+  +C  G +T    VL K+ +        T + L+ G C 
Sbjct: 330 SHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCL 389

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V++A     +++  G  +   +YA ++  + ++G    A+K +    GR  K + E+
Sbjct: 390 KGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEM 449

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + ++   L   +  +EA  +  EM  + +
Sbjct: 450 YSTIIDALCKYQLVSEAYGLFSEMTVKGI 478



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  L K  K+ EA  V+ +M +        T++ +++       +++A  +
Sbjct: 515 PDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHV 574

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M  + V+PD+  Y  L+  +C    +     + K+M ++ +  D  TY +LV G C+
Sbjct: 575 FNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCK 634

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+   + L+  M D GQ     TY  ++  L + G+  +A+        + I+ +T  
Sbjct: 635 SGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFT 694

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
           F  L   L    R  +A  + +++    L  G+ L D Y  NV
Sbjct: 695 FTILLDGLCKGGRLKDAQEVFQDL----LTKGYHL-DVYIYNV 732



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 72/155 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+  LCK  +I     ++D M + G     IT++ ++  L +   +++A  L
Sbjct: 620 PDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIAL 679

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK+  + P+   +  LL   C  G L     V + +  +    D   Y+ ++ G C+
Sbjct: 680 FNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCK 739

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G +EEA  +L +M ++G      T+  ++ AL +
Sbjct: 740 QGLLEEALTMLSKMEENGCIPNAVTFDIIINALFK 774



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 5/188 (2%)

Query: 76  ITNTENSLSVLSDLCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           I N ++++S LS L + L R   G+P  +   +TLI  LC   ++ EAL   D +   GF
Sbjct: 39  IQNVDDAVS-LSVLTKILKR---GYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGF 94

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
            L+ +++  +++ + R      A   +  +      P++  YN ++ A C    ++   G
Sbjct: 95  QLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYG 154

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +  +M  + + A+  TY  L+ G C  G+++EA  LL  MV    +    TY  ++ AL 
Sbjct: 155 LFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALC 214

Query: 255 RLGYYAQA 262
           + G   +A
Sbjct: 215 KEGKVKEA 222



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 13/184 (7%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARL-----------DKGFPRKS-AYDTLIGRLC 114
           F   +  N + +T    S++  LC++  R+           D+G P     Y++LI  LC
Sbjct: 610 FKEMHQKNMVPDTVTYSSLVDGLCKS-GRISYVWDLIDEMRDRGQPADVITYNSLIDGLC 668

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           K   +D+A+ + + M + G   +  TF  +L  L +G R+++A  + + +       D+ 
Sbjct: 669 KNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVY 728

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            YN ++  +C +G L     +L KMEE     +A T+D ++    +    ++A  LLR+M
Sbjct: 729 IYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQM 788

Query: 235 VDDG 238
           +  G
Sbjct: 789 IARG 792



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LCK + + EA  +   M   G   + +T+  ++       +++EA GL
Sbjct: 131 PNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGL 190

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + VM    ++P++  YN L+ A C +G +     VL  M +  + ++  TY  L+ G   
Sbjct: 191 LNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFL 250

Query: 221 AGRVEEA 227
              V++A
Sbjct: 251 VYEVKKA 257



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 88/214 (41%), Gaps = 2/214 (0%)

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
            RL K  P    Y T+I  LCK + + EA  +   M   G     +T+  ++       +
Sbjct: 440 GRLTK--PNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGK 497

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           ++EA GL+  M    ++PD+  Y  L+ A   +G +     VL  M +  +  D  TY+ 
Sbjct: 498 LKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNT 557

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+ G      V++A  +   M   G +    TY  ++    +     +A+        ++
Sbjct: 558 LMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKN 617

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +  DT  + SL   L    R +    ++ EM  R
Sbjct: 618 MVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDR 651



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%)

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           VL K+ +     D  T + L+ G C  G+V+EA     +++  G  +   +YA ++  + 
Sbjct: 50  VLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVC 109

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           R+G    A+KF+    GR  K + E++ ++   L   +  +EA  +  EM  + +
Sbjct: 110 RIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGI 164



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 42/214 (19%), Positives = 87/214 (40%), Gaps = 8/214 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI   C + +I     V+  + + G+  S +T + ++  L    ++++A   
Sbjct: 340 PDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHF 399

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +       +  +Y  L+   C  G+      +L+K++      +   Y  ++   C+
Sbjct: 400 HDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCK 459

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV----KFVMVCGGRDIKL 276
              V EA+ L   M   G S    TY+ ++     +G   +A+    + V+     D++ 
Sbjct: 460 YQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRT 519

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            T L  +LG +     +  EA  +L  M K  +K
Sbjct: 520 YTILVDALGKE----GKVKEAKSVLAVMLKACVK 549


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 1/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LCK ++  EA  +++ M   G      T+  +++   + K+ ++A  +
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGAC 219
            E +      PD+  Y+ L+   C +G L     +  +M +      +  TY++L+ G C
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R G+++EA  LL RM + G S    TY  +M    +L     A   +     + +  +  
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVV 231

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
            F SL   L    R ++A  IL EM ++
Sbjct: 232 TFTSLMDGLCRENRLSDAVHILGEMRRK 259



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 103/205 (50%), Gaps = 2/205 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y++LI   C++ K+DEA+ +++ MAE G     +T+  +++   +  R+++A+ 
Sbjct: 157 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 216

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M    ++P++  +  L+   C +  L+    +L +M  +       TY+ ++ G C
Sbjct: 217 LLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 276

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R  ++EEA   +   +D   +V+  ++  ++  L ++   ++A++ V     R    D  
Sbjct: 277 RVNQLEEARKFMLEEMDCPPNVV--SFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVV 334

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
           ++ ++   L   ++ +EA  + ++M
Sbjct: 335 MYTTVIDVLCREKKVDEACRVYRKM 359



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 1/174 (0%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           +A+T++ ++S L + +R  EA+ L+E M      PD+  Y  L+T +C          V 
Sbjct: 53  TAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVF 112

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS-TYAHVMGALLR 255
           +++       D  TY  L+ G C+ GR++EA  L  RM+  G  +  + TY  ++    R
Sbjct: 113 EQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCR 172

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +G   +A+  +          D   + +L +    L R ++A  +L +M ++ L
Sbjct: 173 MGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 226



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 50/222 (22%)

Query: 76  ITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEAL 123
           + NT    S++S  CR + ++D+              P    Y TL+   CKL ++D+A 
Sbjct: 157 MPNTVTYNSLISGFCR-MGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAY 215

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +++ M   G   + +TF  ++  L R  R+ +A  ++  M+    SP +  YN +L  Y
Sbjct: 216 DLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGY 275

Query: 184 CFKGNL------------------------------TATSGVLKKMEE---EKLGADART 210
           C    L                                +S  ++ +EE    +   D   
Sbjct: 276 CRVNQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVM 335

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDD----GQSVLYSTYAH 248
           Y  ++   CR  +V+EA  + R+M+++      S+ YST+ +
Sbjct: 336 YTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYSTFDY 377



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 7/182 (3%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
             ++G+ PD  T   Y  L+N       L+    LLN+  R        TF  + +    
Sbjct: 186 MAETGSSPDVVT---YTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCR 242

Query: 83  LSVLSDLCRTLA--RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            + LSD    L   R     P    Y+T++   C++ +++EA +   ++ E     + ++
Sbjct: 243 ENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKF--MLEEMDCPPNVVS 300

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ ++  L +  R  EA  L+E  +  R +PD+  Y  ++   C +  +     V +KM 
Sbjct: 301 FNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKML 360

Query: 201 EE 202
           EE
Sbjct: 361 EE 362


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 14/236 (5%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           ++G  PDE   A   D +  AG  R  E   +++ K         A T  + T   +  S
Sbjct: 560 QNGLKPDEHAYAVLTDALCKAG--RAEEAYSFIVRK-------GVALTKVYYTTLIDGFS 610

Query: 85  VL--SDLCRTLAR--LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
               +D   TL    +D+G  P    Y  L+  LCK K+++EAL ++D M+  G   +  
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 670

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
            +  ++  + R  + + A  +   M      P  T Y   + +YC +G L     ++ KM
Sbjct: 671 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKM 730

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           E E +  D  TY+ L+ G    G ++ AF  L+RMV       Y TY  ++  LL+
Sbjct: 731 EREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLK 786



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 3/210 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y ++I   CK  K+D AL V+ +M   G   +A T++ ++  L + K++ +A  L
Sbjct: 460 PNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMAL 519

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  + P++  Y  LL   C + +      + + ME+  L  D   Y  L    C+
Sbjct: 520 LTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK 579

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR EEA+  + R    G ++    Y  ++    + G    A   +          D+  
Sbjct: 580 AGRAEEAYSFIVR---KGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT 636

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L   +R NEA  IL +M+ R +K
Sbjct: 637 YSVLLHALCKQKRLNEALPILDQMSLRGIK 666



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 1/205 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI  LC+ K + EAL +  +M   G   +   F  ++S L +  R+ +A  L + M
Sbjct: 255 SYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V P +  YN ++  Y   G +     + + ME+     D  TY+ L+ G C   + 
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KT 373

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           EEA  LL   V +G +    T+ +++        +  A++          KLD ++FG L
Sbjct: 374 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 433

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            + LI  +R  EA  +L E++   L
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGL 458



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 116/303 (38%), Gaps = 76/303 (25%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTL 93
           T  YY  L++      + +    L+ +   + C   + T++ +         L  LC+  
Sbjct: 598 TKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL---------LHALCKQ- 647

Query: 94  ARLDKGFPRKS------------AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            RL++  P               AY  LI  + +  K D A R+ + M   G   SA T+
Sbjct: 648 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 707

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA------------------- 182
              ++   +  R+E+A  L+  M+   V+PD+  YN L+                     
Sbjct: 708 TVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVG 767

Query: 183 ---------YCF------KGNL-----TATSG------------VLKKMEEEKLGADART 210
                    YC       KGNL       TSG            +L++M +  L     T
Sbjct: 768 ASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTT 827

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-- 268
           Y +L+ G C+AGR+EEA +LL  M   G S     Y  ++       ++ +A+ FV +  
Sbjct: 828 YSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMS 887

Query: 269 -CG 270
            CG
Sbjct: 888 ECG 890



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 55  RYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGR 112
           R L +   ++    +  T+N +    + L  ++D  +    ++K    P    Y+TLI  
Sbjct: 308 RLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYG 367

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC  +K +EA  +++   + GF  + +TF  +++     ++ ++A  +   M   +   D
Sbjct: 368 LCD-QKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLD 426

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           L  +  L+ +   K  L     +L ++    L  +  TY +++ G C++G+V+ A  +L+
Sbjct: 427 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 486

Query: 233 RMVDDGQSVLYSTYAHVMGALLR 255
            M  DG      TY  +M  L++
Sbjct: 487 MMERDGCQPNAWTYNSLMYGLVK 509



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 61/149 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y +LI   CK  +++EA  ++D M   G   +   +  ++      K  E+A   
Sbjct: 823 PTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSF 882

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M E    P L +Y  L+   C +G+      +   + E     D   +  L  G  +
Sbjct: 883 VSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLK 942

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
           AG V+  F +L  M      +   TYA V
Sbjct: 943 AGYVDICFQMLSIMEKRYCCISSQTYALV 971



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 11/199 (5%)

Query: 74  NFITNTENSLSVLSD-LCRTLARLDKGFP---------RKSAYDTLIGRLCKLKKIDEAL 123
           N +   E++ +VL+D LC+   R ++ +           K  Y TLI    K    D A 
Sbjct: 561 NGLKPDEHAYAVLTDALCKA-GRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAA 619

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +++ M + G    + T+  +L  L + KR+ EA  +++ M    +   + AY  L+   
Sbjct: 620 TLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEM 679

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
             +G       +  +M        A TY   +   C+ GR+E+A  L+ +M  +G +   
Sbjct: 680 LREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDV 739

Query: 244 STYAHVMGALLRLGYYAQA 262
            TY  ++     +GY  +A
Sbjct: 740 VTYNILIDGCGHMGYIDRA 758



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 90/238 (37%), Gaps = 5/238 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  Y+ L+     ++ L     LL K  +D       T+  +   +       +  R
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 553

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               +++    P + AY  L   LCK  + +EA   +      G  L+ + +  ++   +
Sbjct: 554 LFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI---VRKGVALTKVYYTTLIDGFS 610

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +    + A  L+E M +   +PD   Y+ LL A C +  L     +L +M    +     
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 670

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
            Y  L+    R G+ + A  +   M   G     +TY   + +  + G    A   ++
Sbjct: 671 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLIL 728



 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 90/206 (43%), Gaps = 1/206 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I    KL ++++AL++ ++M + G      T++ ++  L   ++ EEA  L
Sbjct: 321 PSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEEL 379

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +    +   +P +  +  L+  YC          +  KM   K   D + +  L+    +
Sbjct: 380 LNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIK 439

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R++EA  LL  +  +G      TY  ++    + G    A++ + +      + +   
Sbjct: 440 KDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWT 499

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + SL   L+  ++ ++A  +L +M K
Sbjct: 500 YNSLMYGLVKDKKLHKAMALLTKMQK 525



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%)

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           PD   YN ++ +YC +G+LT      + + E  L  +  T +ALVLG CR G + +A  L
Sbjct: 181 PDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWL 240

Query: 231 LRRM 234
              M
Sbjct: 241 FLMM 244



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 25/222 (11%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R + +  +   +P++  Y   +N+   E  LE    L+ K  R+       T+N      
Sbjct: 690 RMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN------ 743

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
               +L D C  +  +D+ F   S    ++G  C+       L +  ++ +G        
Sbjct: 744 ----ILIDGCGHMGYIDRAF---STLKRMVGASCEPNYWTYCLLLKHLL-KGNLAY---- 791

Query: 141 FHPILSVLTRGK----RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
              + SV T G      ++  W L+E M +  ++P +T Y+ L+  +C  G L     +L
Sbjct: 792 ---VRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLL 848

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             M  + L  +   Y  L+   C     E+A   +  M + G
Sbjct: 849 DHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECG 890


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 16/276 (5%)

Query: 38  YDDLVNAAGHERDL---ETVRYLLNK---RARDCCFNTANTFNFIT-NTENSLSVLSDLC 90
           Y  LV+    ER +   E V  ++ K   RA +  + T    +F+  N+E +L +LS++ 
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMK 425

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
                LD      S Y  LI  LC + K+DEA  ++  M E G   + I +  ++    +
Sbjct: 426 NKGLELDI-----SLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFK 480

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++ EA  +++ + +    P++  Y  L+   C  G++        KM +  L  + + 
Sbjct: 481 SGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQA 540

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVMV 268
           Y ALV G C+ G + EA  L   MV  G S+    Y  ++   L+ G  + A A+K  M+
Sbjct: 541 YTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMI 600

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             G  ++LD   +    S    L    EA  +  EM
Sbjct: 601 DSG--LQLDLFCYTCFISGFCNLNMMPEAREVFSEM 634



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 110/249 (44%), Gaps = 35/249 (14%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    +++LI    K  ++DE  ++V+ M   G     +T++ +++   +  RME A+G
Sbjct: 220 LPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYG 279

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               MK   V  ++  ++  + A+C +G +     +  +M    +  +  TY  L+ G C
Sbjct: 280 YFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTC 339

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL------------LRL----GYYAQAV 263
           +AGR+++A VLL  MV  G  +   TY  ++  L            LR+    G  A  +
Sbjct: 340 KAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL 399

Query: 264 KFVMVCGG-------------------RDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  +  G                   + ++LD  L+G+L   L  + + +EA  +L +M
Sbjct: 400 LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM 459

Query: 305 NKRDLKMGF 313
           ++  L+  +
Sbjct: 460 DESGLEPNY 468



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 89/206 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++    K  K+ EA+ ++  + + GF  + IT+  ++  L +   ++EA   
Sbjct: 466 PNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISH 525

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+++ + P++ AY  L+   C  G L     +  +M  + +  D   Y AL+ G  +
Sbjct: 526 FNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK 585

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + +AF L  +M+D G  +    Y   +     L    +A +      G  I  D  +
Sbjct: 586 QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAV 645

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  L SK   L    EA  +  EM +
Sbjct: 646 YNCLISKYQKLGNLEEAISLQDEMER 671



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 80/161 (49%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI   CK  ++D+A+ ++D M   G  L+ +T+  ++  L + +++ EA  ++ +M+
Sbjct: 331 YTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMME 390

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  V  +   Y  L+  +    N     G+L +M+ + L  D   Y AL+ G C   +++
Sbjct: 391 KAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLD 450

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           EA  LL +M + G    Y  Y  +M A  + G   +A+  +
Sbjct: 451 EAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAML 491



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 4/208 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  L+  LCK +K+ EA  V+ +M + G   + + +  ++      K  E+A GL+  MK
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMK 425

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +  D++ Y  L+   C    L     +L KM+E  L  +   Y  ++    ++G+V 
Sbjct: 426 NKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVP 485

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD--TELFGS 283
           EA  +L++++D G      TY  ++  L + G   +A+        RD+ LD   + + +
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFN--KMRDLGLDPNVQAYTA 543

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLKM 311
           L   L      NEA  +  EM  + + +
Sbjct: 544 LVDGLCKNGCLNEAVQLFNEMVHKGMSL 571


>gi|240254074|ref|NP_172820.4| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190928|gb|AEE29049.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 8/234 (3%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           A  F+ +     +  V+ D+      LDKG  P    Y  L+   C+L  ID  L ++  
Sbjct: 299 AKGFHLLGMISGAWEVIRDM------LDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKD 352

Query: 129 MAEGGFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           M   GF L S I    +LS L +  R++EA  L   MK   +SPDL AY+ ++   C  G
Sbjct: 353 MLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLG 412

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
                  +  +M ++++  ++RT+ AL+LG C+ G + EA  LL  ++  G+++    Y 
Sbjct: 413 KFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYN 472

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
            V+    + G   +A++   V     I      F SL       +   EA  IL
Sbjct: 473 IVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 526



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 96/218 (44%), Gaps = 12/218 (5%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I    K   I+EAL +  ++ E G   S  TF+ ++    + + + EA  +++V+K
Sbjct: 471 YNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIK 530

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++P + +Y  L+ AY   GN  +   + ++M+ E +     TY  +  G CR  + E
Sbjct: 531 LYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHE 590

Query: 226 EAFVLLRR------------MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
               +LR             M  +G      TY  ++  L R+ + + A  F+ +   R+
Sbjct: 591 NCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRN 650

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           +   +  +  L   L       +A+  +  + ++++ +
Sbjct: 651 LDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSL 688



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 8/193 (4%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N +  L +L D+      L +GF   S      ++  LCK  +IDEAL + + M   G  
Sbjct: 342 NIDMGLVLLKDM------LSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLS 395

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
              + +  ++  L +  + + A  L + M + R+ P+   +  LL   C KG L     +
Sbjct: 396 PDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSL 455

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L  +       D   Y+ ++ G  ++G +EEA  L + +++ G +   +T+  ++    +
Sbjct: 456 LDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCK 515

Query: 256 LGYYAQAVKFVMV 268
               A+A K + V
Sbjct: 516 TQNIAEARKILDV 528



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           RT    D G P   ++++++   CKL  +D A      + + G   S  + + +++ L  
Sbjct: 211 RTSEWKDIG-PSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCL 269

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + EA  L   M +  V PD   YN L   +   G ++    V++ M ++ L  D  T
Sbjct: 270 VGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVIT 329

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDG 238
           Y  L+ G C+ G ++   VLL+ M+  G
Sbjct: 330 YTILLCGQCQLGNIDMGLVLLKDMLSRG 357



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + +++LI   CK + I EA +++D++   G   S +++  ++         +    L
Sbjct: 501 PSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDEL 560

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK------------MEEEKLGADA 208
              MK   + P    Y+ +    C        + VL++            ME E +  D 
Sbjct: 561 RREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQ 620

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+ ++   CR   +  AFV L  M         +TY  ++ +L   GY  +A  F+  
Sbjct: 621 ITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIY- 679

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
                         SL  + + L +F     I     K D +M  KL
Sbjct: 680 --------------SLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKL 712



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 110/243 (45%), Gaps = 8/243 (3%)

Query: 17  VLVTRSFTKSGAFPD-EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFN-TANTFN 74
           V++ +   + G F   E T   +D L+  +   R ++   Y+L K+ +D   N +  ++N
Sbjct: 105 VILEQLLQEEGTFRKWESTGLVWDMLLFLSSRLRMVDDSLYIL-KKMKDQNLNVSTQSYN 163

Query: 75  FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
            +         + D+ + +   DK    +  Y T++  LC+ +K+++A+  +        
Sbjct: 164 SVLYHFRETDKMWDVYKEIK--DKN---EHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDI 218

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
           G S ++F+ I+S   +   ++ A      + +  + P + ++N L+   C  G++     
Sbjct: 219 GPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALE 278

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +   M +  +  D+ TY+ L  G    G +  A+ ++R M+D G S    TY  ++    
Sbjct: 279 LASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQC 338

Query: 255 RLG 257
           +LG
Sbjct: 339 QLG 341



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L +G+  ++    L  R+   +K  + LR  D+ +EG      IT++ I+  L R K + 
Sbjct: 583 LCRGWKHENCNHVLRERI--FEKCKQGLR--DMESEG-IPPDQITYNTIIQYLCRVKHLS 637

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A+  +E+MK   +      YN L+ + C  G +      +  ++E+ +      Y  L+
Sbjct: 638 GAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLI 697

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              C  G  E A  L  +++  G +V    Y+ V+  L R
Sbjct: 698 KAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCR 737



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 1/168 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    +  L+  LC+   + EA  ++D +   G  L  + ++ ++    +   +EEA  
Sbjct: 430 LPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALE 489

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L +V+ E  ++P +  +N L+  YC   N+     +L  ++   L     +Y  L+    
Sbjct: 490 LFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYA 549

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             G  +    L R M  +G      TY+ +   L R G+  +    V+
Sbjct: 550 NCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCR-GWKHENCNHVL 596


>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g07740, mitochondrial-like [Cucumis sativus]
          Length = 460

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 117/285 (41%), Gaps = 42/285 (14%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEAL 123
           CF T  +FN + NT       S       +  + GF P   +Y+ +I    K    ++A 
Sbjct: 147 CFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMGFRPNSVSYNIMIKGWIKKGGWEQAC 206

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            + D M E G   S +T++  L VL R   M+ A  L + M E    P+   Y  L+  +
Sbjct: 207 NLFDEMLEKGVQPSVVTYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGW 266

Query: 184 CF-----------------------------------KGNLTATSGVLKKMEEEKLGADA 208
           CF                                    GN+     +L +M++ +L  D 
Sbjct: 267 CFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDV 326

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV-- 266
            TY+ LV   C+ G+V +A+ +L +M   G     +TY  ++      G +  A+K +  
Sbjct: 327 VTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNA 386

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNE-ANFILKEMNKRDLK 310
           M+  G    L T  F SL   L+  E  ++   F+L+EM KR L+
Sbjct: 387 MLMSGHYPHLKT--FASLVVGLLKGENNDDYVCFVLEEMEKRQLR 429


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 130/304 (42%), Gaps = 5/304 (1%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SLL  L       +++LV       G  PD  +   Y  +VNA   E  ++     + + 
Sbjct: 226 SLLSNLVQNGEAFKALLVYEQMIALGILPDIFS---YTIMVNAYCKEGRVDEAFNFVKEM 282

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGFPRKS-AYDTLIGRLCKLKKI 119
            R CC     T+N + +   SL  +    + LA + +KG P  S  Y  LI   CK  ++
Sbjct: 283 ERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQM 342

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           ++A +++  M E    +    +  ++       R+++A  + + M ++ +  +    N L
Sbjct: 343 EQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSL 402

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +  YC  G++   + VL  M++  L  D+  Y+ L+ G C+     +AF L   M + G 
Sbjct: 403 INGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGV 462

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +    TY  ++  L  +G+   A+    +   R +  +   + +L      +  F+ A  
Sbjct: 463 NFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMM 522

Query: 300 ILKE 303
           I K+
Sbjct: 523 IWKD 526



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+  I  LCK K ID+  R++  +   GF     T+  ++   +   ++ EA+ L + M
Sbjct: 748 VYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDM 807

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               + P++  YN L+   C  GNL     +  K+  + L     TY+ L+ G C+ GR 
Sbjct: 808 INAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRT 867

Query: 225 EEAFVLLRRMVDDG---QSVLYSTYAH 248
            EA  L  +M ++G    S+ YST  H
Sbjct: 868 TEALELKDKMREEGICPSSITYSTLIH 894



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 1/168 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KGF +  + Y+T+I   CK++K+ +A  +   M E GF    IT+  ++    +   +
Sbjct: 528 LSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNL 587

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L ++ +   +S     YN L+T       L   +G+L +M+  +L  +  TY +L
Sbjct: 588 VEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSL 647

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C  G +++A+    +M+D G +      + ++ +L R G   +A
Sbjct: 648 IAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEA 695



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 91/209 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+   CK +   +A ++ D M   G   + +T++ +L  L     +E A  +
Sbjct: 429 PDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHI 488

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M +  V+P+   Y  LL A+   G       + K    +        Y+ ++ G C+
Sbjct: 489 WNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCK 548

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             ++ +A  +  +M + G      TY  ++    ++G   +A+K   +     I   TE+
Sbjct: 549 MEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEM 608

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + SL + +   E   + N +L EM  R+L
Sbjct: 609 YNSLITGVFRSEELQKLNGLLAEMKNREL 637



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 7/163 (4%)

Query: 78  NTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           N ++   +LSDL      L KGF P    Y +LI     + K++EA  + D M   G   
Sbjct: 761 NIDDVRRILSDL------LLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVP 814

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           + + ++ +++ L +   ++ A  L   +    +SP +  YN L+  YC  G  T    + 
Sbjct: 815 NIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELK 874

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
            KM EE +   + TY  L+ G    G+ E++  LL  M+  G+
Sbjct: 875 DKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAGK 917



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 98/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   + ++L+  L +  +  +AL V + M   G      ++  +++   +  R++EA+  
Sbjct: 219 PSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNF 278

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+     P++  YN L+  Y   G++     VL  M E+ +  ++RTY  L+ G C+
Sbjct: 279 VKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCK 338

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E+A  L+  M++    V    Y  ++ A    G    A++         +K++T +
Sbjct: 339 RGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVI 398

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             SL +    L   N+A  +L  M   +LK
Sbjct: 399 CNSLINGYCKLGHVNKAAEVLVSMKDWNLK 428



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 99  GFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GFP     Y TLI   CK+  + EAL++ D+    G   S   ++ +++ + R + +++ 
Sbjct: 566 GFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKL 625

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
            GL+  MK   +SP++  Y  L+  +C KG +        KM ++ +  +      +V  
Sbjct: 626 NGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSS 685

Query: 218 ACRAGRVEEAFVLLRRMVD 236
             R G+++EA ++L ++ D
Sbjct: 686 LYRHGKIDEANLILHQIAD 704



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 89/208 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y  ++   CK  ++DEA   V  M       + +T++ ++        +  A  
Sbjct: 253 LPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKK 312

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ +M E  +  +   Y  L+  YC +G +     ++  M E+ L  D   Y  L+   C
Sbjct: 313 VLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYC 372

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            AGRV++A  +   M+  G  +       ++    +LG+  +A + ++     ++K D+ 
Sbjct: 373 TAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSY 432

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
            + +L       E F +A  +  EM+ +
Sbjct: 433 GYNTLLDGFCKQEDFIKAFKLCDEMHNK 460



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 85/190 (44%)

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           AL V D M + G   S  + + +LS L +     +A  + E M  + + PD+ +Y  ++ 
Sbjct: 205 ALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVN 264

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
           AYC +G +      +K+ME      +  TY++L+ G    G V  A  +L  M + G   
Sbjct: 265 AYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPE 324

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
              TY  ++    + G   QA K +     +++ +D  ++G L        R ++A  I 
Sbjct: 325 NSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIR 384

Query: 302 KEMNKRDLKM 311
             M K  LKM
Sbjct: 385 DAMLKVGLKM 394



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 85/208 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y TL+    K+   D A+ +       GF  S   ++ ++    + +++ +A  +
Sbjct: 499 PNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEI 558

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MKE+   PD   Y  L+  YC  GNL     +    E + + +    Y++L+ G  R
Sbjct: 559 FLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFR 618

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +  +++   LL  M +   S    TY  ++      G   +A         + I  +  +
Sbjct: 619 SEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIII 678

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
              + S L    + +EAN IL ++   D
Sbjct: 679 GSKIVSSLYRHGKIDEANLILHQIADID 706



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK   +D A R+ + +A  G   + +T++ ++    +G R  EA  L
Sbjct: 814 PNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALEL 873

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            + M+E  + P    Y+ L+     +G    + G+L +M   K G  +   D LV
Sbjct: 874 KDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEM--MKAGKGSSVMDPLV 926


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T++    +L   DEA  +   M E GF    +T++ +L    +  +  EA  L
Sbjct: 328 PDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSL 387

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E MK+   SP++  Y+ L+ AYC  G       + + +++  L  D   Y  LV G C+
Sbjct: 388 LEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCK 447

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G  +EA  LL  M D+G      TY  ++ A  R
Sbjct: 448 NGSPDEALALLEEMADNGIRPNVITYNSLLDAYGR 482



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 114/276 (41%), Gaps = 3/276 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ +++A     D  T   +  +           TFN + +     +   +  R
Sbjct: 186 KPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDR 245

Query: 92  TLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVL 148
             A ++ +G  R    Y+TLI   C+  ++     +++ MA+  G   S IT+  ++   
Sbjct: 246 IFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGY 305

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +     EA  L + M+   V PD   YN ++  +   GN      + + MEE     D 
Sbjct: 306 AKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDI 365

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+AL+    + G+  EA  LL  M   G S    TY+ ++ A  + G++  A+     
Sbjct: 366 VTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQD 425

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                ++ D  L+ +L          +EA  +L+EM
Sbjct: 426 VKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEM 461



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 9/238 (3%)

Query: 14  PQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTF 73
           P ++ + R   + G  PD  T   ++ L++AAG     E    +  +           T+
Sbjct: 206 PTALRIFREMLEQGMSPDRIT---FNTLISAAGRANRWEECDRIFAEMEERGIARDDVTY 262

Query: 74  NFITNT---ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           N +  T      + + + L  T+A+     P    Y T+I    KL    EA+ +   M 
Sbjct: 263 NTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMR 322

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
                   I ++ ++ +  R    +EA  +   M+E   + D+  YN LL +Y  +G   
Sbjct: 323 NQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFR 382

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
               +L++M++     +  TY AL+   C+ G   +A  L + +   G     VLYST
Sbjct: 383 EAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYST 440



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 103 KSAYD----TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           +S +D    T+I  L +L + D A  + D     GFG +   +  ++    R  ++ +A 
Sbjct: 116 RSQWDKVTSTIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAV 175

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            + E MK +   P+L  YN ++ A    G+      + ++M E+ +  D  T++ L+  A
Sbjct: 176 EIFEAMKVV-CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAA 234

Query: 219 CRAGRVEEAFVLLRRMVDDG---QSVLYSTY--AHVMGALLRLG 257
            RA R EE   +   M + G     V Y+T    +  G  + LG
Sbjct: 235 GRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLG 278



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 14/208 (6%)

Query: 106 YDTLI------GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           Y +LI      G+L K  +I EA++VV          + + ++ ++   ++G     A  
Sbjct: 158 YSSLICAYGRSGKLAKAVEIFEAMKVV-------CKPNLVVYNAVIDACSKGGDYPTALR 210

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +   M E  +SPD   +N L++A            +  +MEE  +  D  TY+ L+   C
Sbjct: 211 IFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYC 270

Query: 220 RAGRVEEAFVLLRRMV-DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           R G++     L+  M    G      TY+ ++    +LG   +A+        ++++ D 
Sbjct: 271 RGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDG 330

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
             + ++      L  F+EA+ I + M +
Sbjct: 331 ICYNTMVDIHARLGNFDEAHSIRRAMEE 358


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  L++GF  K+A            Y  LI  LCK  K+D+A  + D M + G   ++++
Sbjct: 184 LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVS 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C  G+L     ++ +M 
Sbjct: 244 FTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P   ++ TLI   CK  ++D A+ +   M         IT++ ++  L +   +
Sbjct: 233 LDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDL 292

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L+  M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL
Sbjct: 293 KQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTAL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  ++E  R+ + M   G      T+  +++ L +  ++++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+  ++  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 NGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 88/190 (46%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+   CK  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E + L   M+   V PD+  Y+ L+   C +  L   + +  +M +  L  ++ ++  L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 20/216 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           + A+G + D+ T   L+N   ++   + AN           + N+ +  +++   C+   
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKD-G 255

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  +++ M+  G     IT+ 
Sbjct: 256 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  +  TY  ++   C+ G V     L++ M  DG
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411



 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 6/157 (3%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
             L+ G C+  ++++A  L   M+D+G    SV ++T
Sbjct: 210 SVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTT 246



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 54/135 (40%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E   E      L  +N L+
Sbjct: 84  DAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILM 143

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
            ++C +G +     V   + +  L     +++ L+ G  + G + E F L   M   G  
Sbjct: 144 HSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQ 203

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 204 PDVYTYSVLINGLCK 218


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK   +D+A  + D M   G   + +T
Sbjct: 179 LGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVT 238

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDJ  YN L+   C KG+L    G++ +M 
Sbjct: 239 FTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMX 298

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 299 XKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSX 358

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++        + + +LKEM +
Sbjct: 359 DAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 404



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 91/210 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+    +L  +DE  R+   M   G      T+  +++ L +   M++A  L
Sbjct: 164 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANEL 223

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P+   +  L+  +C  G +     + K+M  + L  D  TY+ LV G C+
Sbjct: 224 FDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCK 283

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + +A  L+  M   G      TY  ++    + G    A +        +I+LD   
Sbjct: 284 KGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVA 343

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 344 YTALISGLCQEGRSXDAEKMLREMLSVGLK 373



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK   I  A  V D + + G   S ++++ +++   R   +
Sbjct: 123 LECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 182

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M  + L  +  T+  L
Sbjct: 183 DEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTL 242

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C+ GRV+ A  + ++M+         TY  ++  L + G   QA
Sbjct: 243 IDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQA 290



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N     +++   C+   R+
Sbjct: 194 ASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKN-GRV 252

Query: 97  DKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TL+  LCK   +++A  ++D M   G      T+  +
Sbjct: 253 DLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTL 312

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +  +  D  AY  L++  C +G       +L++M    L
Sbjct: 313 IDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGL 372

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             D  TY  ++   C+ G V +   LL+ M  +G      TY  +M  
Sbjct: 373 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMNG 420



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 48/116 (41%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L  L + +  +  WG  E + E      L  +N L+  +C  G++     V   +
Sbjct: 98  TCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAI 157

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  L     +Y+ L+ G  R G ++E F L   M   G      TY+ ++  L +
Sbjct: 158 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCK 213


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T++    +L   DEA  +   M E GF    +T++ +L    +  +  EA  L
Sbjct: 329 PDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSL 388

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E MK+   SP++  Y+ L+ AYC  G       + + +++  L  D   Y  LV G C+
Sbjct: 389 LEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCK 448

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G  +EA  LL  M D+G      TY  ++ A  R
Sbjct: 449 NGSPDEALALLEEMADNGIRPNVITYNSLLDAYGR 483



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 114/276 (41%), Gaps = 3/276 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ +++A     D  T   +  +           TFN + +     +   +  R
Sbjct: 187 KPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDR 246

Query: 92  TLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVL 148
             A ++ +G  R    Y+TLI   C+  ++     +++ MA+  G   S IT+  ++   
Sbjct: 247 IFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGY 306

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +     EA  L + M+   V PD   YN ++  +   GN      + + MEE     D 
Sbjct: 307 AKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDI 366

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+AL+    + G+  EA  LL  M   G S    TY+ ++ A  + G++  A+     
Sbjct: 367 VTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQD 426

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                ++ D  L+ +L          +EA  +L+EM
Sbjct: 427 VKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEM 462



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 9/238 (3%)

Query: 14  PQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTF 73
           P ++ + R   + G  PD  T   ++ L++AAG     E    +  +           T+
Sbjct: 207 PTALRIFREMLEQGMSPDRIT---FNTLISAAGRANRWEECDRIFAEMEERGIARDDVTY 263

Query: 74  NFITNT---ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           N +  T      + + + L  T+A+     P    Y T+I    KL    EA+ +   M 
Sbjct: 264 NTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMR 323

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
                   I ++ ++ +  R    +EA  +   M+E   + D+  YN LL +Y  +G   
Sbjct: 324 NQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFR 383

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
               +L++M++     +  TY AL+   C+ G   +A  L + +   G     VLYST
Sbjct: 384 EAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYST 441



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 103 KSAYD----TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           +S +D    T+I  L +L + D A  + D     GFG +   +  ++    R  ++ +A 
Sbjct: 117 RSQWDKVTSTIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAV 176

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            + E MK +   P+L  YN ++ A    G+      + ++M E+ +  D  T++ L+  A
Sbjct: 177 EIFEAMKVV-CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAA 235

Query: 219 CRAGRVEEAFVLLRRMVDDG---QSVLYSTY--AHVMGALLRLG 257
            RA R EE   +   M + G     V Y+T    +  G  + LG
Sbjct: 236 GRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLG 279



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 14/208 (6%)

Query: 106 YDTLI------GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           Y +LI      G+L K  +I EA++VV          + + ++ ++   ++G     A  
Sbjct: 159 YSSLICAYGRSGKLAKAVEIFEAMKVV-------CKPNLVVYNAVIDACSKGGDYPTALR 211

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +   M E  +SPD   +N L++A            +  +MEE  +  D  TY+ L+   C
Sbjct: 212 IFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYC 271

Query: 220 RAGRVEEAFVLLRRMV-DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           R G++     L+  M    G      TY+ ++    +LG   +A+        ++++ D 
Sbjct: 272 RGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDG 331

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
             + ++      L  F+EA+ I + M +
Sbjct: 332 ICYNTMVDIHARLGNFDEAHSIRRAMEE 359


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 1/203 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+TLI  LCK +K   AL ++ +MA  G+  S +T+  ++  L +   ++ A  L++ M 
Sbjct: 13  YNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMA 72

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +   +P++  Y  L+   C           +K+M       D  TY++L+ G C A R++
Sbjct: 73  DAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMD 132

Query: 226 EA-FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +A  VL   M++ G+     TY   +  L + G   + ++ +       I  D   F S+
Sbjct: 133 DAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSI 192

Query: 285 GSKLIGLERFNEANFILKEMNKR 307
            S L    R ++A  + K M +R
Sbjct: 193 ISGLCKANRIDDAFQVFKGMLER 215



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 8/251 (3%)

Query: 21  RSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT 79
           +    +G  P+  T +A  D L  A      ++TV+ +L    R  C     T+N + + 
Sbjct: 69  QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRML----RSGCEPDLVTYNSLIHG 124

Query: 80  ENSLSVLSDLCRTLARL--DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
               + + D    L  L  + G  P    Y+T I  LCK  K+D+ L +++ M  GG   
Sbjct: 125 LCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISP 184

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             +TF  I+S L +  R+++A+ + + M E    PD   Y+ +L        L     VL
Sbjct: 185 DVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVL 244

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           + M +    A + TY  L+    RAG +E A     + ++ G  +   T+   +GAL R 
Sbjct: 245 EHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRS 304

Query: 257 GYYAQAVKFVM 267
           G +  A   ++
Sbjct: 305 GKFPLAKNILL 315



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           S++S LC+   R+D  F            P    Y  ++  L +  ++D    V++ M +
Sbjct: 191 SIISGLCKA-NRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVK 249

Query: 132 GG-FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
            G + LSA T+ P++  L R   +E A    E   E     ++  +N  + A C  G   
Sbjct: 250 SGHYALSA-TYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFP 308

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
               +L  M E     +  +Y+ ++ G C++G V++A+ L R+M+D G
Sbjct: 309 LAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSG 356



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 5/181 (2%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           MA   F L A  ++ +++ L + ++   A  L+ VM        +  Y  L+   C  G+
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYST 245
           L A   +L+KM +     +  TY AL+ G C+A R  +A   ++RM+  G     V Y++
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
             H +    R+      ++ +M+  GR    D   + +  S L    + ++   +L+EM+
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGR--IPDVVTYNTFISGLCKAGKLDKGLEMLEEMD 178

Query: 306 K 306
           +
Sbjct: 179 R 179



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 69/131 (52%), Gaps = 2/131 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++  IG LC+  K   A  ++  M E G   + ++++ ++  L +   +++AW L   M 
Sbjct: 294 HNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKML 353

Query: 166 EIRVS-PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA-DARTYDALVLGACRAGR 223
           +     PD+  +N L++ +C  G L+    +LK+M+ + +   D  TY+ ++ G  + G 
Sbjct: 354 DSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGS 413

Query: 224 VEEAFVLLRRM 234
           +++A +LL  M
Sbjct: 414 LKQAKLLLEEM 424


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y  LI    K   I+EALR+ D M   G  L+ +T++ ++  + +   M +A  L
Sbjct: 344 PNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    + PD   YN L+  Y    ++     +L +M+  KL     TY  L+ G C 
Sbjct: 404 FNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCH 463

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +  +++A  +L +M+ +G       Y  ++ A ++   Y  A++ + +     +  D   
Sbjct: 464 SSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFC 523

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L   ++  EA  +L +M ++ +K
Sbjct: 524 YNCLIIGLCRAKKVEEAKMLLVDMGEKGIK 553



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+  IG LC+   +DEAL V  +M E G G    T+  ++    + KR +EA  +
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M    ++P+   Y  L+  +  +GN+     +  +M    L  +  TY+A++ G  +
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG + +A  L   M+  G      TY  ++   L+    A+A + +     R +      
Sbjct: 394 AGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFT 453

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L S L       +AN +L +M +  +K
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVK 483



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 2/142 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C +    EAL     M E G       +  I+  L++  + +EA G+
Sbjct: 589 PNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGV 648

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV--LGA 218
                +  V PD+  YN L++ +C +G++   S +  +M    +  +   Y+ L+   G 
Sbjct: 649 FLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGY 708

Query: 219 CRAGRVEEAFVLLRRMVDDGQS 240
           C++G + EAF L   M+  G S
Sbjct: 709 CKSGNLTEAFKLFDEMISKGIS 730



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           SA+++LI   CK  K+ EA  + D M +     + +T+  ++    + + MEEA  L   
Sbjct: 768 SAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLD 827

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+   + P+   Y  LL +Y   GN      + K ME   +  DA  Y  +    C+ G+
Sbjct: 828 METRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGK 887

Query: 224 VEEAFVLLRRMVDDG 238
             EA  LL + + +G
Sbjct: 888 SLEALKLLNKSLVEG 902



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 8/211 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-----NTENSLSVLS 87
           P+   Y  L++   H  DL+    +L++  R+      N F + T       E+   +  
Sbjct: 449 PSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGV--KPNVFMYGTLIKAYVQESRYEMAI 506

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +L + +   +   P    Y+ LI  LC+ KK++EA  ++  M E G   +A T+   +++
Sbjct: 507 ELLKIMIA-NGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINL 565

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            ++   ++ A    + M    + P+   Y  L+  +C  GN        K M E+ L  D
Sbjct: 566 YSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPD 625

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            R Y A++    + G+ +EA  +  + +  G
Sbjct: 626 IRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 83  LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           L +L  L R       G    + +D  I +   L  ++EA  V       GF  + I  +
Sbjct: 154 LEILDSLVRCYREF--GGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCN 211

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++  L +   M   W +   M E ++ PD+  Y  ++ A+C  G++     VL +ME+E
Sbjct: 212 NLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE 271

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
               +  TY+A + G C+ G V+EA  + + M++ G
Sbjct: 272 -CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKG 306



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 4/156 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI    K   + +A  ++  M       S  T+  ++S L     +++A  +
Sbjct: 414 PDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEV 473

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    V P++  Y  L+ AY  +        +LK M    +  D   Y+ L++G CR
Sbjct: 474 LDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCR 533

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           A +VEEA +LL  M + G        AH  GA + L
Sbjct: 534 AKKVEEAKMLLVDMGEKG----IKPNAHTYGAFINL 565



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 3/141 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KG  P   AY  +I  L K  K  EA+ V     + G       ++ ++S   +   +
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDI 677

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLT--AYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           E+A  L + M    ++P++  YN L+    YC  GNLT    +  +M  + +  D   Y 
Sbjct: 678 EKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYC 737

Query: 213 ALVLGACRAGRVEEAFVLLRR 233
            L+ G  + G +E+A  L   
Sbjct: 738 ILIDGCGKEGNLEKALSLFHE 758



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS--VLTRGKRMEEAW 158
           P    Y++LI   CK   I++A ++ D M   G   + + ++ +++     +   + EA+
Sbjct: 659 PDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAF 718

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L + M    +SPD   Y  L+     +GNL     +  + +++ +G+    +++L+   
Sbjct: 719 KLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGS-LSAFNSLIDSF 777

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+ G+V EA  L   MVD   +    TY  ++ A  +     +A +  +    R+I  +T
Sbjct: 778 CKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNT 837

Query: 279 ELFGSL 284
             + SL
Sbjct: 838 LTYTSL 843


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 128/275 (46%), Gaps = 10/275 (3%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLE-TVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           G  PD  T   Y+ ++N    E  +E  + +L N  +  C  NT  ++N +     +   
Sbjct: 231 GCAPDIVT---YNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTV-SYNIVLKGLFTAER 286

Query: 86  LSDLCRTLARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
             D  + +  +  KG P     ++ LI  LC+   ++ A+ V++ M + G   ++++++P
Sbjct: 287 WEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNP 346

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +L    + K++ +A   +E+M      PD+ +YN LLTA C  G +     +L +++++ 
Sbjct: 347 LLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKG 406

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
                 +Y+ ++ G  +AG+ +EA  LL  M   G      TY+ +   L R     +AV
Sbjct: 407 CSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAV 466

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
           +         I+    L+ ++   L+GL +  E +
Sbjct: 467 RTFCKVQDMGIRPTAALYNAI---LLGLCKRRETH 498



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 1/171 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P   +Y+TL+  LC+  ++D A+ ++  + + G     I+++ ++  LT+  + +EA  
Sbjct: 373 YPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALE 432

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M    + PD+  Y+ + +  C +  +        K+++  +   A  Y+A++LG C
Sbjct: 433 LLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLC 492

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVMVC 269
           +      A  L   M+  G     STY  ++  L   G   +A + F  +C
Sbjct: 493 KRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLC 543



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 72/166 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LC   +   AL V++ M   G     +T+  +L    +    ++A  L
Sbjct: 164 PDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKL 223

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +   +PD+  YN +L   C +G +      LK +       +  +Y+ ++ G   
Sbjct: 224 LDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFT 283

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           A R E+A  L+  M   G      T+  ++  L R G    A++ +
Sbjct: 284 AERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVL 329



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 8/199 (4%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           LI +LC   +  +A RV+        G   + ++ +++      +++ A  L+  M    
Sbjct: 110 LIKKLCASGRTADARRVL-----AASGPDVMVYNAMVAGYCGAGQLDAARRLVADMP--- 161

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V PD   YN L+   C +G  +    VL+ M       D  TY  L+   C+    ++A 
Sbjct: 162 VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAM 221

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            LL  M D G +    TY  V+  + + G    A++F+        + +T  +  +   L
Sbjct: 222 KLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGL 281

Query: 289 IGLERFNEANFILKEMNKR 307
              ER+ +A  +++EM  +
Sbjct: 282 FTAERWEDAEKLMEEMAHK 300


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 125/278 (44%), Gaps = 3/278 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVLSDLCR 91
           P   + ++L+N  G    +E +  + ++     C  T  ++N +      S + +S++  
Sbjct: 336 PDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSS 395

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              ++  D   P +  Y  LI   CK  ++++AL +++ M E GF      +  +++ L 
Sbjct: 396 WFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALG 455

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + KR E A  L + +KE   +     Y  ++  +   G L+    +  +M+ +  G D  
Sbjct: 456 KAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVY 515

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
            Y+AL+ G  +AG + EA  LLR+M ++G     +++  ++    R G   +A++     
Sbjct: 516 AYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETI 575

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
               IK D   + +L         F EA  +++EM  +
Sbjct: 576 KHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDK 613



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 114/269 (42%), Gaps = 3/269 (1%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHER-DLETVRYLLNKRARDCCFNTANTFNFIT 77
           +T  F++ G +   PT   Y+ ++ A    +  +  V    +K   D    +  T++ + 
Sbjct: 357 LTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILI 416

Query: 78  NTENSLSVLSDLCRTLARLD-KGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           +     + +      L  +D KGFP   +AY +LI  L K K+ + A  +   + E    
Sbjct: 417 DGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGN 476

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           +S+  +  ++    +  ++ EA  L   MK     PD+ AYN L++     G +   + +
Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSL 536

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L+KMEE    AD  +++ ++ G  R G    A  +   +   G      TY  ++G    
Sbjct: 537 LRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAH 596

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            G + +A + +     +  + D   + S+
Sbjct: 597 AGMFEEAARMMREMKDKGFEYDAITYSSI 625



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 128/302 (42%), Gaps = 53/302 (17%)

Query: 32  EPTSAYYDD----LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
           +PTS+ Y+     L+    HE+  E    + N+     CF    T++ + ++   L    
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD---CFPDTITYSALISSYEKLGRND 250

Query: 88  DLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
              R    +      P +  Y TL+G   K+ K+++AL + + M   G   +  T+  ++
Sbjct: 251 SAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310

Query: 146 SVLTRGKRMEEAWG-------------------LMEVMKEI----------------RVS 170
             L +  R++EA+G                   LM ++ ++                R +
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT 370

Query: 171 PDLTAYNYLLTA-YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           P + +YN ++ A +  K +++  S    KM+ + +     TY  L+ G C+  RVE+A +
Sbjct: 371 PTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALL 430

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
           LL  M + G     + Y  ++ AL +   Y  A +       +++K   E FG++ S++ 
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELF-----KELK---ENFGNVSSRVY 482

Query: 290 GL 291
            +
Sbjct: 483 AV 484



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 67/148 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I    K  K+ EA+ + + M   G G     ++ ++S + +   + EA  L+  M+
Sbjct: 482 YAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKME 541

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E     D+ ++N +L  +   G       + + ++   +  D  TY+ L+     AG  E
Sbjct: 542 ENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFE 601

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           EA  ++R M D G      TY+ ++ A+
Sbjct: 602 EAARMMREMKDKGFEYDAITYSSILDAV 629



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 19/194 (9%)

Query: 82  SLSVLSDLCRTLARLD---------------KGFPRKSAYDTLIGRLCKLKKIDEALRV- 125
           S +VLS+L + L R                 K  P  S Y+++I  L +  + ++   V 
Sbjct: 161 SPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVY 220

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
            ++  EG      IT+  ++S   +  R + A  L + MK+  + P    Y  LL  Y  
Sbjct: 221 TEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFK 280

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VL 242
            G +     + ++M+         TY  L+ G  +AGRV+EA+   + M+ DG +   V 
Sbjct: 281 VGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVF 340

Query: 243 YSTYAHVMGALLRL 256
            +   +++G + R+
Sbjct: 341 LNNLMNILGKVGRV 354



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 11/200 (5%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSVL 86
           + A   +LV A G  + +     +  +     C  T++T+N +          E    V 
Sbjct: 161 SPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVY 220

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           +++C         FP    Y  LI    KL + D A+R+ D M +     +   +  +L 
Sbjct: 221 TEMCNE----GDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLG 276

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           +  +  ++E+A  L E MK    SP +  Y  L+      G +    G  K M  + L  
Sbjct: 277 IYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTP 336

Query: 207 DARTYDALVLGACRAGRVEE 226
           D    + L+    + GRVEE
Sbjct: 337 DVVFLNNLMNILGKVGRVEE 356



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 7/206 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + +++L+     + G FP  P  A Y  L+NA G  +  E    L  +   +    ++  
Sbjct: 425 VEKALLLLEEMDEKG-FP--PCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRV 481

Query: 73  FNFITNTENSLSVLS---DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           +  +         LS   DL   +     G P   AY+ L+  + K   I+EA  ++  M
Sbjct: 482 YAVMIKHFGKCGKLSEAVDLFNEMKNQGSG-PDVYAYNALMSGMVKAGMINEANSLLRKM 540

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E G      + + IL+   R      A  + E +K   + PD   YN LL  +   G  
Sbjct: 541 EENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMF 600

Query: 190 TATSGVLKKMEEEKLGADARTYDALV 215
              + ++++M+++    DA TY +++
Sbjct: 601 EEAARMMREMKDKGFEYDAITYSSIL 626


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 98/203 (48%), Gaps = 2/203 (0%)

Query: 86  LSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           + D CR  A++ +G+  P    Y  L+  LCK++++ EA  ++  M   G   + +T++ 
Sbjct: 177 IDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNA 236

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++  L +  R ++   L+E M+  R SPD   Y  ++   C  G +   + VL +   + 
Sbjct: 237 LIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKG 296

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           +  +  TY+AL+ G C+ G ++ A  +L+ M  +  +    T+  V+      G   +A+
Sbjct: 297 VALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAM 356

Query: 264 KFVMVCGGRDIKLDTELFGSLGS 286
            F+    G  +  +T  F SL S
Sbjct: 357 AFLTQMAGAGLSPNTVTFNSLIS 379



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 17/194 (8%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI  LC   +ID+A RV   M+ G       T+  +L  L + +R+ EA  L+  M
Sbjct: 163 SYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEM 222

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V P++  YN L+   C +G     + +L+KME ++   D  TY  +V G C+ G+V
Sbjct: 223 VNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKV 282

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
                +L   +  G ++   TY     AL+  GY          C G D+K   ++   +
Sbjct: 283 GHGAKVLHEAIGKGVALEVLTY----NALIN-GY----------CKGGDMKAALDVLQLM 327

Query: 285 GSKLI--GLERFNE 296
               +  G++ FNE
Sbjct: 328 KRNRVNPGVQTFNE 341



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++LI   C + +   ALR++D+M E G      T+   +  L    ++EEA  L
Sbjct: 369 PNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSL 428

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    +      Y  L+  YC  G++ +  G+++KM  E    D  TY+ L+ G C+
Sbjct: 429 FSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCK 488

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             R++ A  LL +M   G      T+  ++  +L    +A A K 
Sbjct: 489 VKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKM 533



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 82/184 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  ++  LCK  K+    +V+      G  L  +T++ +++   +G  M+ A  +
Sbjct: 264 PDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDV 323

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++MK  RV+P +  +N ++  +C  G +      L +M    L  +  T+++L+ G C 
Sbjct: 324 LQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCS 383

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  + A  LL  M + G      TYA  + AL   G   +A         + IK    +
Sbjct: 384 VGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVI 443

Query: 281 FGSL 284
           + SL
Sbjct: 444 YTSL 447



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ +I   C   K+ +A+  +  MA  G   + +TF+ ++S        + A  L
Sbjct: 334 PGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRL 393

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M+E  V PD   Y   + A C +G L     +   +  + + A    Y +LV G C+
Sbjct: 394 LDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQ 453

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G ++ AF L+ +M  +       TY  ++  L ++    +A+  +     + I+  T  
Sbjct: 454 VGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCT 513

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F  L  +++  ++  +A  + ++M
Sbjct: 514 FNILIKQMLWDKKHADAAKMYEQM 537



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 6/208 (2%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI   CK   +  AL V+ +M          TF+ ++     G ++ +A   +  M 
Sbjct: 304 YNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMA 363

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +SP+   +N L++  C  G       +L  MEE  +  D +TY   +   C  G++E
Sbjct: 364 GAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLE 423

Query: 226 EAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           EA  L   +   G    +V+Y++  H      ++G    A   +      +   D   + 
Sbjct: 424 EAHSLFSCLPMKGIKAHNVIYTSLVH---GYCQVGDIDSAFGLMEKMASENCMPDVHTYN 480

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDLK 310
           +L   L  ++R + A  +L +M K+ ++
Sbjct: 481 TLIDGLCKVKRLDRAIDLLDKMKKQGIE 508



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK+K++D A+ ++D M + G   +  TF+ ++  +   K+  +A  
Sbjct: 473 MPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAK 532

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS--GVLKKMEEEKLGADARTYDALVLG 217
           + E M      PD   Y   ++   F+G     +    + +M E  +  D  TY+A++  
Sbjct: 533 MYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKA 592

Query: 218 ACRAGRVEEAFVLLRRMV 235
              AG  E+AF    +M+
Sbjct: 593 YVDAGLKEKAFFAHVKML 610



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 60/147 (40%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  Y   I  LC   +++EA  +   +   G     + +  ++    +   ++ A+G
Sbjct: 403 LPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFG 462

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           LME M      PD+  YN L+   C    L     +L KM+++ +     T++ L+    
Sbjct: 463 LMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQML 522

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTY 246
              +  +A  +  +M+  G      TY
Sbjct: 523 WDKKHADAAKMYEQMISSGCKPDKQTY 549



 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA--DARTYDALVLGACRA 221
           M+E  ++PD   YN L+   C  G L A  G+  +M   + GA  D  +Y  L+ G C A
Sbjct: 116 MREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQM-PRRWGACYDRYSYTILIKGLCAA 174

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELF 281
           GR+++A  +  +M          TY  ++  L ++    +A   +     + +  +   +
Sbjct: 175 GRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTY 234

Query: 282 GSLGSKLIGLERFNEANFILKEM 304
            +L   L    RF++   +L++M
Sbjct: 235 NALIGGLCQEGRFDDVTKLLEKM 257



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%)

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           +R  R+         M +    P+   YN L+ A+C    L      L +M E  L  D 
Sbjct: 66  SRAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDT 125

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRM 234
            TY+ L+LG CRAG +  A  L  +M
Sbjct: 126 FTYNCLMLGLCRAGLLAAACGLFVQM 151



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 104/285 (36%), Gaps = 63/285 (22%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y  LV+      D+++   L+ K A + C    +T+N + +    L  +  L R +  LD
Sbjct: 444 YTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLID---GLCKVKRLDRAIDLLD 500

Query: 98  KG--------------------FPRKSA-----YDTLIGRLCKLKKIDEALRV------- 125
           K                     + +K A     Y+ +I   CK  K    L++       
Sbjct: 501 KMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEG 560

Query: 126 ------VDI----MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
                 +D+    M E G      T++ I+         E+A+     M  + + PD T 
Sbjct: 561 ATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTT 620

Query: 176 YNYLLTAYCFKGNLTATSG--------------VLKKMEEEKLGADARTYDALVLGACRA 221
           Y+ LL   C K +  A                 + ++M E        TY AL+ G C  
Sbjct: 621 YSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQ 680

Query: 222 GRVEEAFVLLRRMVDDGQSVLY--STYAHVMGALLRLGYYAQAVK 264
            R+EE   LL +M   G S+L       +++G    L  Y +A +
Sbjct: 681 CRLEEVEWLLLKM--QGNSILLDEDMSDYLLGCYCNLEMYREACE 723


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 82/169 (48%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           + F  +++ L R KR++EA+ ++E        PD   YN  +   C    +     +LKK
Sbjct: 8   VAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKK 67

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M+E+K      TY ALV G  +AGR++EA  +L +MV+ G S    TY  V+  L + G 
Sbjct: 68  MDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGR 127

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +A +  +   G   + D  ++ +L   L    +  EA  + KE N R
Sbjct: 128 VEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANAR 176



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 118/282 (41%), Gaps = 49/282 (17%)

Query: 74  NFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDE 121
            FI +     S++  LC+ L R+++G             P    Y  LI    K K I +
Sbjct: 217 GFIPDAVTYTSIIDGLCK-LGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPK 275

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A RV   M + G  +S +T++ IL  L +  R+ EA+     M+E      +  Y+ L+ 
Sbjct: 276 AHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMD 335

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF-----VLLRR--- 233
            +C +GN++A   + ++M +     +  +Y+ ++ G CRAG++ +A+     +L RR   
Sbjct: 336 GFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCP 395

Query: 234 ----------------------------MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
                                       MV  G S    +Y+ +M  + R G    A++ 
Sbjct: 396 DVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEI 455

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                 R +  D  +F +L   L    R +EA  + +E+ +R
Sbjct: 456 FREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERR 497



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 118/288 (40%), Gaps = 17/288 (5%)

Query: 29  FPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD 88
            P  P    +  ++N    E+ L+    +L +  R  C     T+N   +       + D
Sbjct: 1   MPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDD 60

Query: 89  LCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
             + L ++D  K  P    Y  L+  L K  ++DEA+ V++ M E G   +  T+  ++ 
Sbjct: 61  AFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVID 120

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L++  R+EEA  +   M      PD   Y  L+   C  G       + K+    K  A
Sbjct: 121 GLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHA 180

Query: 207 ----DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS------TYAHVMGALLRL 256
               D  TY +L+ G C+AGR+ EA     R V D ++V         TY  ++  L +L
Sbjct: 181 TAVPDVVTYTSLIDGLCKAGRILEA-----RQVFDDEAVERGFIPDAVTYTSIIDGLCKL 235

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           G   +  +       R  + D   + +L    +  +   +A+ + ++M
Sbjct: 236 GRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQM 283



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 1/168 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +++GF P    Y ++I  LCKL +++E       M   G+   A+T+  ++    + K +
Sbjct: 214 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMI 273

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  +   M +         YN +L   C  G +         MEE    A   TY AL
Sbjct: 274 PKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSAL 333

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C  G V  A  L RRM+D G      +Y  ++  L R G  A+A
Sbjct: 334 MDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKA 381



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 1/166 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y +LI  LCK  +I EA +V D  A E GF   A+T+  I+  L +  R+EE   
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M+     PD   Y  L+  +     +     V ++M +        TY+ ++ G C
Sbjct: 244 RFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 303

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           +AGRV EA+     M + G      TY+ +M      G  + AV+ 
Sbjct: 304 KAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVEL 349



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 10/228 (4%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           +IP++  V R   +SG      T     D +  AG   +       + +R    C  T  
Sbjct: 272 MIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERG---CVATVV 328

Query: 72  TFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVD 127
           T++ + +   +E ++S   +L R +  LD+G  P   +Y+ +I  LC+  K+ +A    +
Sbjct: 329 TYSALMDGFCSEGNVSAAVELFRRM--LDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFE 386

Query: 128 IMAEGGFGLSAITFHPILSVLT-RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
            + +        TF+  L  L  R   + +   L E M     SP+L +Y+ L+   C  
Sbjct: 387 KLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRA 446

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           G L     + ++M    +  D   ++ L+   C AGRV+EA  + R +
Sbjct: 447 GGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFREL 494


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 8/168 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRMEEAWG 159
           P    Y TL+    +  K++ A+ + + M   G   +  TF+  + +   RGK ++    
Sbjct: 382 PDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVD---- 437

Query: 160 LMEVMKEIRV---SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           +M++  EI V   SPD+  +N LL  +   G  +  SGV K+M+      +  T++ L+ 
Sbjct: 438 MMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLIS 497

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
              R G  E+A  + RRM+D G +   STY  V+ AL R G + Q+ K
Sbjct: 498 AYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEK 545



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 115/277 (41%), Gaps = 13/277 (4%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLA--- 94
           Y  L++A  +         +  K   + C  T  T+N I N    +    +   +L    
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKI-DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           + D   P    Y+TLI   CK   +  EA +V + M   GF    +T++ +L V  +  R
Sbjct: 271 KSDGIAPDAYTYNTLI-TCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHR 329

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
            +EA  ++  M+    SP +  YN L++AY   G L     +  +M E+    D  TY  
Sbjct: 330 PKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF---VMVCG 270
           L+ G  RAG+VE A  +   M + G      T+   +      G +   +K    + VCG
Sbjct: 390 LLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCG 449

Query: 271 -GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
              DI     L    G    G++  +E + + KEM +
Sbjct: 450 LSPDIVTWNTLLAVFGQN--GMD--SEVSGVFKEMKR 482



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 89/208 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           PR     TL+    K   + EA R    + E GF     T + ++S+  R + + +A  +
Sbjct: 592 PRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEV 651

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MKE   +P +  YN L+  +    +   +  +L+++  + +  D  +Y+ ++   CR
Sbjct: 652 LDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCR 711

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R+ +A  +   M D G      TY   +G+      + +A+  V        + +   
Sbjct: 712 NTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNT 771

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + S+      L R +EA   ++++   D
Sbjct: 772 YNSIVDGYCKLNRKDEAKLFVEDLRNLD 799



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +I  L K  ++  A  + + + E GF L   ++  ++S      R  EA  + + M+E  
Sbjct: 179 VISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEG 238

Query: 169 VSPDLTAYNYLLTAYCFKGN-LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
             P L  YN +L  +   G      + +++KM+ + +  DA TY+ L+    R    +EA
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298

Query: 228 FVLLRRMVDDGQSVLYSTY 246
             +   M   G S    TY
Sbjct: 299 AQVFEEMKAAGFSHDKVTY 317



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 59/136 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++  I       K  + +++ D +   G     +T++ +L+V  +     E  G+
Sbjct: 417 PNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + MK     P+   +N L++AY   G+      V ++M +  +  D  TY+ ++    R
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALAR 536

Query: 221 AGRVEEAFVLLRRMVD 236
            G  E++  +L  M D
Sbjct: 537 GGMWEQSEKVLAEMED 552



 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P +  ++TLI    +    ++A+ V   M + G      T++ +L+ L RG   E++
Sbjct: 484 GFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQS 543

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAY 183
             ++  M++ R  P+   Y  LL AY
Sbjct: 544 EKVLAEMEDGRCKPNELTYCSLLHAY 569



 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 1/162 (0%)

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++S+L +  R+  A  L   ++E   S D+ +Y  L++A+   G       V KKMEEE 
Sbjct: 179 VISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEG 238

Query: 204 LGADARTYDALVLGACRAGRVEEAFV-LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
                 TY+ ++    + G        L+ +M  DG +    TY  ++    R   + +A
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +            D   + +L        R  EA  +L EM
Sbjct: 299 AQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEM 340


>gi|8920567|gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464
           from Arabidopsis thaliana BAC F23N19 gb|AC007190. It
           contains a PPR repeat domain PF|01535 [Arabidopsis
           thaliana]
          Length = 797

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 8/234 (3%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           A  F+ +     +  V+ D+      LDKG  P    Y  L+   C+L  ID  L ++  
Sbjct: 312 AKGFHLLGMISGAWEVIRDM------LDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKD 365

Query: 129 MAEGGFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           M   GF L S I    +LS L +  R++EA  L   MK   +SPDL AY+ ++   C  G
Sbjct: 366 MLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLG 425

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
                  +  +M ++++  ++RT+ AL+LG C+ G + EA  LL  ++  G+++    Y 
Sbjct: 426 KFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYN 485

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
            V+    + G   +A++   V     I      F SL       +   EA  IL
Sbjct: 486 IVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 539



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 96/218 (44%), Gaps = 12/218 (5%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I    K   I+EAL +  ++ E G   S  TF+ ++    + + + EA  +++V+K
Sbjct: 484 YNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIK 543

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++P + +Y  L+ AY   GN  +   + ++M+ E +     TY  +  G CR  + E
Sbjct: 544 LYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHE 603

Query: 226 EAFVLLRR------------MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
               +LR             M  +G      TY  ++  L R+ + + A  F+ +   R+
Sbjct: 604 NCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRN 663

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           +   +  +  L   L       +A+  +  + ++++ +
Sbjct: 664 LDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSL 701



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 8/193 (4%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N +  L +L D+      L +GF   S      ++  LCK  +IDEAL + + M   G  
Sbjct: 355 NIDMGLVLLKDM------LSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLS 408

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
              + +  ++  L +  + + A  L + M + R+ P+   +  LL   C KG L     +
Sbjct: 409 PDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSL 468

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L  +       D   Y+ ++ G  ++G +EEA  L + +++ G +   +T+  ++    +
Sbjct: 469 LDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCK 528

Query: 256 LGYYAQAVKFVMV 268
               A+A K + V
Sbjct: 529 TQNIAEARKILDV 541



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           RT    D G P   ++++++   CKL  +D A      + + G   S  + + +++ L  
Sbjct: 224 RTSEWKDIG-PSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCL 282

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + EA  L   M +  V PD   YN L   +   G ++    V++ M ++ L  D  T
Sbjct: 283 VGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVIT 342

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDG 238
           Y  L+ G C+ G ++   VLL+ M+  G
Sbjct: 343 YTILLCGQCQLGNIDMGLVLLKDMLSRG 370



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + +++LI   CK + I EA +++D++   G   S +++  ++         +    L
Sbjct: 514 PSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDEL 573

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK------------MEEEKLGADA 208
              MK   + P    Y+ +    C        + VL++            ME E +  D 
Sbjct: 574 RREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQ 633

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+ ++   CR   +  AFV L  M         +TY  ++ +L   GY  +A  F+  
Sbjct: 634 ITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIY- 692

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
                         SL  + + L +F     I     K D +M  KL
Sbjct: 693 --------------SLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKL 725



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 109/241 (45%), Gaps = 12/241 (4%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFI 76
           L++ SF K      E T   +D L+  +   R ++   Y+L K+ +D   N +  ++N +
Sbjct: 125 LLSNSFRKW-----ESTGLVWDMLLFLSSRLRMVDDSLYIL-KKMKDQNLNVSTQSYNSV 178

Query: 77  TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
                    + D+ + +   DK    +  Y T++  LC+ +K+++A+  +        G 
Sbjct: 179 LYHFRETDKMWDVYKEIK--DKN---EHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGP 233

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S ++F+ I+S   +   ++ A      + +  + P + ++N L+   C  G++     + 
Sbjct: 234 SVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELA 293

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
             M +  +  D+ TY+ L  G    G +  A+ ++R M+D G S    TY  ++    +L
Sbjct: 294 SDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQL 353

Query: 257 G 257
           G
Sbjct: 354 G 354



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 62/140 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+T+I  LC++K +  A   ++IM       S+ T++ ++  L     + +A   
Sbjct: 631 PDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSF 690

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  ++E  VS    AY  L+ A+C KG+      +  ++         R Y A++   CR
Sbjct: 691 IYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCR 750

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
              V E+      M+  G S
Sbjct: 751 RHLVNESKFFFCLMLSQGIS 770



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L +G+  ++    L  R+   +K  + LR  D+ +EG      IT++ I+  L R K + 
Sbjct: 596 LCRGWKHENCNHVLRERI--FEKCKQGLR--DMESEG-IPPDQITYNTIIQYLCRVKHLS 650

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A+  +E+MK   +      YN L+ + C  G +      +  ++E+ +      Y  L+
Sbjct: 651 GAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLI 710

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              C  G  E A  L  +++  G +V    Y+ V+  L R
Sbjct: 711 KAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCR 750



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 1/168 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    +  L+  LC+   + EA  ++D +   G  L  + ++ ++    +   +EEA  
Sbjct: 443 LPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALE 502

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L +V+ E  ++P +  +N L+  YC   N+     +L  ++   L     +Y  L+    
Sbjct: 503 LFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYA 562

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             G  +    L R M  +G      TY+ +   L R G+  +    V+
Sbjct: 563 NCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCR-GWKHENCNHVL 609



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 20/215 (9%)

Query: 101 PRKSAYDTLI---GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           P   +Y TL+         K IDE  R  ++ AEG    + +T+  I   L RG + E  
Sbjct: 549 PSVVSYTTLMDAYANCGNTKSIDELRR--EMKAEG-IPPTNVTYSVIFKGLCRGWKHENC 605

Query: 158 -------------WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
                         GL ++  E  + PD   YN ++   C   +L+     L+ M+   L
Sbjct: 606 NHVLRERIFEKCKQGLRDMESE-GIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNL 664

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            A + TY+ L+   C  G + +A   +  + +   S+    Y  ++ A    G    AVK
Sbjct: 665 DASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVK 724

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
                  R   +    + ++ ++L      NE+ F
Sbjct: 725 LFHQLLHRGFNVSIRDYSAVINRLCRRHLVNESKF 759


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 134/310 (43%), Gaps = 17/310 (5%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           + L+R++  +FL P   ++T               A   +L     HE   E + +L+  
Sbjct: 412 LRLIREMVARFLKPNDAVMT---------------ACIQELCKRGKHEEAAE-IWFLVLG 455

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKID 120
           +       T+N         N++   + + + +      F R + Y+ +I   CK  K++
Sbjct: 456 KGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRIT-YNIMIQFCCKASKME 514

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA+++ D M + GF     TF+  L       ++E+   L++ MK   + PD+  Y  ++
Sbjct: 515 EAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTII 574

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             YC   ++   +  L ++ +  L  +A  Y+AL+ G  R G + +A  +L  M  +G  
Sbjct: 575 DGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQ 634

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
               TY  +M  +   G   +A +    C  ++I+L    +  +      + + +EA   
Sbjct: 635 PTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMY 694

Query: 301 LKEMNKRDLK 310
            KEM+ RD++
Sbjct: 695 FKEMHYRDIR 704



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 78/155 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LC+  +++EA ++   M EG    S +TF  +++ L RG+R  E   +
Sbjct: 249 PTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAV 308

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+   ++P+   YN L+  +C +G+ +    +  +M  + +     TY+ +    C+
Sbjct: 309 LQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCK 368

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G +E A  +L  M+  G +V  S +  V+   LR
Sbjct: 369 EGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLR 403



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 5/213 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LC+  +ID A  ++  +   G   + +T++ ++  L R  R+EEA+ L
Sbjct: 214 PDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQL 273

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E R+ P +  +  L+              VL++ME   +  +   Y+ L+   CR
Sbjct: 274 KGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCR 333

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
            G   EA  L   MV  G      TY  +  AL + G    A + +  M+  G  + +  
Sbjct: 334 EGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAG--MTVHC 391

Query: 279 ELFGS-LGSKLIGLERFNEANFILKEMNKRDLK 310
            LF S +   L G  R +    +++EM  R LK
Sbjct: 392 SLFNSVVAWHLRGTGRLDVVLRLIREMVARFLK 424



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 7/150 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LIG   +   I +A+ V+D M   G   + IT++ ++  +     +EEA  +
Sbjct: 600 PNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEI 659

Query: 161 ME--VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
               ++K I +   +  Y  ++  +C  G +       K+M    +  +  TY  L+   
Sbjct: 660 FAQCILKNIELG--VIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAY 717

Query: 219 CRAGRVEEAFVLLRRMVDDG---QSVLYST 245
           C+ G  EEAF L   MV  G    +V Y+T
Sbjct: 718 CKCGNKEEAFKLFDEMVSSGIVPDTVSYNT 747



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V+PD+  Y  ++ A C  G + A   +L ++E   +     TY+ L+   CR+GRVEEAF
Sbjct: 212 VAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAF 271

Query: 229 VLLRRMVD 236
            L  RMV+
Sbjct: 272 QLKGRMVE 279



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 36/246 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+ LIG  C+     EALR+ D M   G   + +T++ I   L +   ME A  +
Sbjct: 319 PNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQI 378

Query: 161 ME------------------------------VMKEIR------VSPDLTAYNYLLTAYC 184
           ++                              V++ IR      + P+       +   C
Sbjct: 379 LDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELC 438

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            +G     + +   +  + LG +  T +AL+ G C+   ++EA  +L+ MVD G      
Sbjct: 439 KRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRI 498

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           TY  ++    +     +A++       R  K D   F +       L +  +   +L +M
Sbjct: 499 TYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQM 558

Query: 305 NKRDLK 310
               LK
Sbjct: 559 KSEGLK 564



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/126 (20%), Positives = 52/126 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++L+  +C    ++EA  +          L  I +  I+    +  +++EA   
Sbjct: 635 PTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMY 694

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P+   Y  L+ AYC  GN      +  +M    +  D  +Y+ L+ G C 
Sbjct: 695 FKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCE 754

Query: 221 AGRVEE 226
              +++
Sbjct: 755 VDSLDK 760


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 137/313 (43%), Gaps = 7/313 (2%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R L       Q+V + RS    G  PD  T   Y  L+       D++T   LLN+ 
Sbjct: 99  TLMRALCADRRAAQAVGLLRSMQDCGVRPDVVT---YGTLIRGLCDAADVDTAVELLNEM 155

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKI 119
                      ++ + +          + +    +  +G  P    Y  LI  LC+  K+
Sbjct: 156 CESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKV 215

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            +A RV+D+M E G   + +T++ +++ + +   + EA  L + M E  V PD+  YN L
Sbjct: 216 KKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTL 275

Query: 180 LTAYCFKGNLTATSGVLKKM--EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
           +T       +     +L++M   E ++  D  T+++++ G C+ G + +A  +   M ++
Sbjct: 276 ITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAEN 335

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G       +  ++G LLR+    +A++ +       ++ D+  +  L +    + +   A
Sbjct: 336 GCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERA 395

Query: 298 NFILKEMNKRDLK 310
              L EM  + ++
Sbjct: 396 ESYLSEMRHQGME 408



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 118/276 (42%), Gaps = 20/276 (7%)

Query: 29  FPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD 88
            P+ P       L++A    RD  +   +L    R  C + A            L V+S 
Sbjct: 40  LPESPA------LLSALPSVRDAVSYNTVLAALCRQGCLDAALFL---------LRVMSH 84

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
             R  +R     P   +Y TL+  LC  ++  +A+ ++  M + G     +T+  ++  L
Sbjct: 85  EPRLASR-----PNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGL 139

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                ++ A  L+  M E  + P++  Y+ LL  YC  G   +   V ++M    +  D 
Sbjct: 140 CDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDV 199

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
             Y AL+   CR G+V++A  ++  M + G      TY  ++ ++ + G   +A+     
Sbjct: 200 VMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKN 259

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              + ++ D   + +L + L  +   +EA  +L+EM
Sbjct: 260 MSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEM 295



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 95/209 (45%), Gaps = 3/209 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS---AITFHPILSVLTRGKRMEEAWGLM 161
           +Y+T++  LC+   +D AL ++ +M+      S   AI++  ++  L   +R  +A GL+
Sbjct: 58  SYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLL 117

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
             M++  V PD+  Y  L+   C   ++     +L +M E  +  +   Y  L+ G C+ 
Sbjct: 118 RSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKT 177

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELF 281
           GR E    +   M   G       Y  ++ +L R G   +A + + +   R ++ +   +
Sbjct: 178 GRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTY 237

Query: 282 GSLGSKLIGLERFNEANFILKEMNKRDLK 310
             L + +       EA  + K M+++ ++
Sbjct: 238 NVLINSMCKEGSVREALDLRKNMSEKGVQ 266



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 3/181 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           A++ LIG L ++ K+ +A+ ++D MA  G    + T+  +++   + +++E A   +  M
Sbjct: 343 AFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEM 402

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGACRAGR 223
           +   + P+   Y  LL A C +G +     +  +M+   KL  DA  Y  ++ GA ++G 
Sbjct: 403 RHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKL--DAAAYSTMIHGAFKSGE 460

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
            + A   L+ M+D+G      TY+  +    + G  A A + +          D  +F S
Sbjct: 461 KKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDS 520

Query: 284 L 284
           L
Sbjct: 521 L 521



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 80/199 (40%), Gaps = 37/199 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  +CK   + EAL +   M+E G     +T++ +++ L+    M+EA  L
Sbjct: 232 PNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMAL 291

Query: 161 MEVM--KEIRVSPDLTAYNYLLTAYCFKG-------------------NLTA----TSGV 195
           +E M   E RV PDL  +N ++   C  G                   NL A      G+
Sbjct: 292 LEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGL 351

Query: 196 LK------------KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           L+            +M    L  D+ TY  L+ G C+  +VE A   L  M   G     
Sbjct: 352 LRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEP 411

Query: 244 STYAHVMGALLRLGYYAQA 262
             Y  ++ A+   G   QA
Sbjct: 412 VHYIPLLKAMCDQGMMGQA 430



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 104/226 (46%), Gaps = 12/226 (5%)

Query: 32  EPTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTF----NFITNTENSLS 84
           EP    Y+ L+N+    G  R+   +R  ++++       T NT     + +   + +++
Sbjct: 231 EPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMA 290

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +L ++ +   R+    P    ++++I  LCK+  + +AL+V  +MAE G   + + F+ +
Sbjct: 291 LLEEMMQGETRVR---PDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLL 347

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L R  ++++A  LM+ M    + PD   Y+ L+  +C    +      L +M  + +
Sbjct: 348 IGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGM 407

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ--SVLYSTYAH 248
             +   Y  L+   C  G + +A  L   M  + +  +  YST  H
Sbjct: 408 EPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIH 453



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 41/195 (21%)

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA---------------------- 191
           + E+  L+  +  +R   D  +YN +L A C +G L A                      
Sbjct: 40  LPESPALLSALPSVR---DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAIS 96

Query: 192 ----------------TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
                             G+L+ M++  +  D  TY  L+ G C A  V+ A  LL  M 
Sbjct: 97  YTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMC 156

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
           + G       Y+ ++    + G +    K      GR I+ D  ++ +L   L    +  
Sbjct: 157 ESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVK 216

Query: 296 EANFILKEMNKRDLK 310
           +A  ++  M +R L+
Sbjct: 217 KAARVMDMMTERGLE 231


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 12/225 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D A  + D M   G   + +T
Sbjct: 190 LGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVT 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMS 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 310 MKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSV 369

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
            A K +       +K DT  +  + +++       + + +LKEM 
Sbjct: 370 DAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQ 414



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 91/210 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+    +L  +DE  ++   M   G      T+  +++ L +  +M+ A  L
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANEL 234

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + +A  L+  M   G      TY  ++    + G    A +        +I+LD   
Sbjct: 295 KGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +++EM    LK
Sbjct: 355 YTALISGLCQEGRSVDAEKMMREMLSVGLK 384



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 5/170 (2%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L  R CK   I  A  V D + + G   S ++++ +++   R   +
Sbjct: 134 LECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 193

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M    V PD+  Y+ L+   C +  +   + +  +M  + L  +  T+  L
Sbjct: 194 DEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTL 253

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQA 262
           + G C+ GRV+ A  + ++M+   QS+L    TY  ++  L + G   QA
Sbjct: 254 IDGHCKNGRVDLAMEIYKQML--SQSLLPDLITYNTLIYGLCKKGDLNQA 301



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 69/153 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK   +++A  ++D M+  G     IT+  ++    +   ++ A+ 
Sbjct: 279 LPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M +  +  D  AY  L++  C +G       ++++M    L  D  TY  ++   C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVC 398

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + G V +   LL+ M  DG +    TY  +M  
Sbjct: 399 KKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431



 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 54/135 (40%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F L   T   +L  L + K  +  WG  E   E      L  +N L 
Sbjct: 90  DAVECYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWGFYEEFLECGYPASLYFFNILX 149

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C +G++     V   + +  L     +Y+ L+ G  R G ++E F L   M   G  
Sbjct: 150 HRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVX 209

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 210 PDVYTYSVLINGLCK 224



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 43/221 (19%), Positives = 85/221 (38%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         +   E G+  S   F+ +     
Sbjct: 94  CYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFC 153

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 154 KEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVY 213

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C+  +++ A  L   M+  G      T+  ++    + G    A++     
Sbjct: 214 TYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + +  D   + +L   L      N+A+ ++ EM+ + LK
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLK 314


>gi|357529169|sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g13630
          Length = 826

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 8/234 (3%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           A  F+ +     +  V+ D+      LDKG  P    Y  L+   C+L  ID  L ++  
Sbjct: 341 AKGFHLLGMISGAWEVIRDM------LDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKD 394

Query: 129 MAEGGFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           M   GF L S I    +LS L +  R++EA  L   MK   +SPDL AY+ ++   C  G
Sbjct: 395 MLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLG 454

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
                  +  +M ++++  ++RT+ AL+LG C+ G + EA  LL  ++  G+++    Y 
Sbjct: 455 KFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYN 514

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
            V+    + G   +A++   V     I      F SL       +   EA  IL
Sbjct: 515 IVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 568



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 96/219 (43%), Gaps = 12/219 (5%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I    K   I+EAL +  ++ E G   S  TF+ ++    + + + EA  +++V+K
Sbjct: 513 YNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIK 572

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++P + +Y  L+ AY   GN  +   + ++M+ E +     TY  +  G CR  + E
Sbjct: 573 LYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHE 632

Query: 226 EAFVLLRR------------MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
               +LR             M  +G      TY  ++  L R+ + + A  F+ +   R+
Sbjct: 633 NCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRN 692

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
           +   +  +  L   L       +A+  +  + ++++ + 
Sbjct: 693 LDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLS 731



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           RT    D G P   ++++++   CKL  +D A      + + G   S  + + +++ L  
Sbjct: 253 RTSEWKDIG-PSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCL 311

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + EA  L   M +  V PD   YN L   +   G ++    V++ M ++ L  D  T
Sbjct: 312 VGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVIT 371

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDG 238
           Y  L+ G C+ G ++   VLL+ M+  G
Sbjct: 372 YTILLCGQCQLGNIDMGLVLLKDMLSRG 399



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 8/193 (4%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N +  L +L D+      L +GF   S      ++  LCK  +IDEAL + + M   G  
Sbjct: 384 NIDMGLVLLKDM------LSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLS 437

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
              + +  ++  L +  + + A  L + M + R+ P+   +  LL   C KG L     +
Sbjct: 438 PDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSL 497

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L  +       D   Y+ ++ G  ++G +EEA  L + +++ G +   +T+  ++    +
Sbjct: 498 LDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCK 557

Query: 256 LGYYAQAVKFVMV 268
               A+A K + V
Sbjct: 558 TQNIAEARKILDV 570



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + +++LI   CK + I EA +++D++   G   S +++  ++         +    L
Sbjct: 543 PSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDEL 602

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK------------MEEEKLGADA 208
              MK   + P    Y+ +    C        + VL++            ME E +  D 
Sbjct: 603 RREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQ 662

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+ ++   CR   +  AFV L  M         +TY  ++ +L   GY  +A  F+  
Sbjct: 663 ITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIY- 721

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
                         SL  + + L +F     I     K D +M  KL
Sbjct: 722 --------------SLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKL 754



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 109/241 (45%), Gaps = 12/241 (4%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFI 76
           L++ SF K      E T   +D L+  +   R ++   Y+L K+ +D   N +  ++N +
Sbjct: 154 LLSNSFRKW-----ESTGLVWDMLLFLSSRLRMVDDSLYIL-KKMKDQNLNVSTQSYNSV 207

Query: 77  TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
                    + D+ + +   DK    +  Y T++  LC+ +K+++A+  +        G 
Sbjct: 208 LYHFRETDKMWDVYKEIK--DKN---EHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGP 262

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S ++F+ I+S   +   ++ A      + +  + P + ++N L+   C  G++     + 
Sbjct: 263 SVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELA 322

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
             M +  +  D+ TY+ L  G    G +  A+ ++R M+D G S    TY  ++    +L
Sbjct: 323 SDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQL 382

Query: 257 G 257
           G
Sbjct: 383 G 383



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 62/140 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+T+I  LC++K +  A   ++IM       S+ T++ ++  L     + +A   
Sbjct: 660 PDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSF 719

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  ++E  VS    AY  L+ A+C KG+      +  ++         R Y A++   CR
Sbjct: 720 IYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCR 779

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
              V E+      M+  G S
Sbjct: 780 RHLVNESKFFFCLMLSQGIS 799



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L +G+  ++    L  R+   +K  + LR  D+ +EG      IT++ I+  L R K + 
Sbjct: 625 LCRGWKHENCNHVLRERI--FEKCKQGLR--DMESEG-IPPDQITYNTIIQYLCRVKHLS 679

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A+  +E+MK   +      YN L+ + C  G +      +  ++E+ +      Y  L+
Sbjct: 680 GAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLI 739

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
              C  G  E A  L  +++  G +V    Y+ V+  L R
Sbjct: 740 KAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCR 779



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 1/168 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    +  L+  LC+   + EA  ++D +   G  L  + ++ ++    +   +EEA  
Sbjct: 472 LPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALE 531

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L +V+ E  ++P +  +N L+  YC   N+     +L  ++   L     +Y  L+    
Sbjct: 532 LFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYA 591

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             G  +    L R M  +G      TY+ +   L R G+  +    V+
Sbjct: 592 NCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCR-GWKHENCNHVL 638


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 9/209 (4%)

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKI 119
           A+  C + A TFN + N         +    L ++++   +P    Y+TL+   CK  + 
Sbjct: 168 AKGICPDVA-TFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRY 226

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
             A +++D MA  G G+   T++  +  L R  R  + + L++ M+   V P+   YN L
Sbjct: 227 KAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTL 286

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           ++ +  +G +   + V  +M    L  ++ TY+ L+ G C  G + EA  L+  MV  G 
Sbjct: 287 ISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGL 346

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
                TY    GALL  G Y  A +F MV
Sbjct: 347 RPNEVTY----GALLN-GLYKNA-EFGMV 369



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 11/175 (6%)

Query: 71   NTFNFITNTENSLSVLSDLCRT----------LARLDKG-FPRKSAYDTLIGRLCKLKKI 119
            N F  I N +   ++ + L RT             L+ G  P    Y TLI  +C++  I
Sbjct: 833  NQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNI 892

Query: 120  DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
              A+++ D M   G     +    I+  L   K++E A  ++++M E+++ P +  +  L
Sbjct: 893  KGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTVATFTTL 952

Query: 180  LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            +  YC + N+     +   ME   +  D   Y+ L+ G C  G +E AF L   M
Sbjct: 953  MHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFKLYEEM 1007



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 72/164 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + ++G L K +K+D        M   G      TF+ +L+ L    + + A  L
Sbjct: 138 PSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNAGFL 197

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  V P    YN LL  YC KG   A S ++  M  + +G D  TY+  +   CR
Sbjct: 198 LRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCR 257

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             R  + ++LL+RM  +       TY  ++   +R G    A K
Sbjct: 258 DSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATK 301



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 71/152 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + +D LI    + + + +A++   +M   G   S  T + +L  L + ++++  W   + 
Sbjct: 106 AVFDLLIRVCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNMVLGSLVKEQKVDMFWSFFKG 165

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    + PD+  +N LL A C +G       +L+KMEE  +   A TY+ L+   C+ GR
Sbjct: 166 MLAKGICPDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGR 225

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            + A  L+  M   G  V   TY   +  L R
Sbjct: 226 YKAASQLIDCMASKGIGVDVCTYNVFIDNLCR 257



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 6/213 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI   C    I EALR++D+M   G   + +T+  +L+ L +         
Sbjct: 312 LPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSS 371

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++E M+   V     +Y  ++   C  G L     +L  M +  +  D  T+  L+ G  
Sbjct: 372 ILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFF 431

Query: 220 RAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           R G++  A  ++ +M   G     +LYST  +      ++GY  +A+    V        
Sbjct: 432 RVGKINNAKEIMCKMYKTGLVPNGILYSTLIY---NYCKMGYLKEALNAYAVMNHSGHVA 488

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           D      L +      +  EA + +  M++  L
Sbjct: 489 DHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGL 521



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 108/228 (47%), Gaps = 10/228 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLC 90
           EP +  ++ +++    +     V  +L+  ++++ CFN A T+N + +       ++  C
Sbjct: 698 EPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLA-TYNILLHGYAKRHAMAR-C 755

Query: 91  RTLAR--LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
             L +  +  GF P K ++ +LI   C+ K  D A++++  +   G  +   TF+ +++ 
Sbjct: 756 FMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITK 815

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
                 M++A+ L++ M +  V P++  YN L        +      VL+ + E      
Sbjct: 816 FCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPT 875

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            + Y  L+ G CR G ++ A     ++ D+ +++  S++   M A++R
Sbjct: 876 NKQYITLINGMCRVGNIKGAM----KLQDEMKTLGISSHNVAMSAIVR 919



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 1/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +D +I          +A  V D M   G   S  T+  +L  L  G  + EA   
Sbjct: 523 PNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHINEALKF 582

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              ++ I  + D   +N  LT+ C  GNL+    ++ +M       D  TY  L+ G C+
Sbjct: 583 FHRLRCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCK 642

Query: 221 AGRVEEAFVLLRRMVDDG-QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            G++  A +L  + ++ G  S   + Y  ++  LL+ G+   A+        +D++ DT 
Sbjct: 643 KGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTV 702

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            F  +  +     + ++ N IL  M  ++L
Sbjct: 703 AFNVIIDQYSRKGKTSKVNDILSTMKSKNL 732



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 63/132 (47%)

Query: 105  AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            A   ++  L   KKI+ A+ V+D+M E     +  TF  ++ V  +   + +A  L  +M
Sbjct: 913  AMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIM 972

Query: 165  KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +   V  D+ AYN L++  C  G++ A   + ++M++  L  +   Y  L+   C     
Sbjct: 973  EHCHVKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSFCAGNYQ 1032

Query: 225  EEAFVLLRRMVD 236
             E+  LLR + D
Sbjct: 1033 IESEKLLRDIQD 1044



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 88/209 (42%), Gaps = 2/209 (0%)

Query: 96  LDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           ++KG   P  + Y +L+  L K      AL + + M         + F+ I+   +R  +
Sbjct: 657 IEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGK 716

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
             +   ++  MK   +  +L  YN LL  Y  +  +     + K M       D  ++ +
Sbjct: 717 TSKVNDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHS 776

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+LG C++   + A  +LR +  +G  +   T+  ++          +A + V       
Sbjct: 777 LILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFM 836

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILK 302
           +  + + + +L + LI    F++A+ +L+
Sbjct: 837 VIPNVDTYNALFNGLIRTSDFHKAHRVLQ 865



 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 5/186 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E ++ +L D+ +         P    +  LI    ++ KI+ A  ++  M + G   + I
Sbjct: 402 EEAVQLLDDMLKVSVN-----PDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGI 456

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
            +  ++    +   ++EA     VM       D    N L+  +C  G L      +  M
Sbjct: 457 LYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNHM 516

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
               L  ++ T+D ++ G   +G   +AF +  +M   G      TY  ++  L   G+ 
Sbjct: 517 SRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHI 576

Query: 260 AQAVKF 265
            +A+KF
Sbjct: 577 NEALKF 582



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 11/132 (8%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P  + + TL+   CK   + +AL +  IM      L  + ++ ++S L     +E A+ L
Sbjct: 944  PTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFKL 1003

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA-- 218
             E MK+  + P+ + Y  L+ ++C  GN         ++E EKL  D +  + + L    
Sbjct: 1004 YEEMKQRDLWPNTSIYIVLIDSFC-AGNY--------QIESEKLLRDIQDRELMRLNQQF 1054

Query: 219  CRAGRVEEAFVL 230
            C + R + A VL
Sbjct: 1055 CYSSRCDIAVVL 1066



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 95/241 (39%), Gaps = 12/241 (4%)

Query: 32  EPTSAYYDDLVNA---AGHERD-LETVRYLLNKRARDCCFNTANTFNFITNT---ENSLS 84
            P  A Y  LV+     GH R  L     +LNK            FN I +    +   S
Sbjct: 663 SPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEP----DTVAFNVIIDQYSRKGKTS 718

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            ++D+  T+   +  F   + Y+ L+    K   +     +   M   GF     ++H +
Sbjct: 719 KVNDILSTMKSKNLCF-NLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSL 777

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    + K  + A  ++  +       D   +N L+T +C +  +     ++K+M +  +
Sbjct: 778 ILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMV 837

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +  TY+AL  G  R     +A  +L+ +++ G       Y  ++  + R+G    A+K
Sbjct: 838 IPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMK 897

Query: 265 F 265
            
Sbjct: 898 L 898


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 78/158 (49%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP   +Y+TLI   CK K++++ +++   M++ G   + +T++ ++    +   +++A  
Sbjct: 327 FPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQE 386

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M    VSPD+  YN LL   C  G L     + + M++ ++  D  TY  ++ G C
Sbjct: 387 FFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMC 446

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G+VE+A+ L   +   G      TY  +M  L   G
Sbjct: 447 KTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 91/194 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++ +I   C   ++  AL V+  M + G+    +T   +++   R  R+ +A  L++ M
Sbjct: 122 TFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            EI   PD+ AYN ++ + C    +       K++  + +  +  TY ALV G C +GR 
Sbjct: 182 VEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRW 241

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A  LLR M+    +    TY+ ++ A ++ G   +A +         I  D   + SL
Sbjct: 242 NDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSL 301

Query: 285 GSKLIGLERFNEAN 298
            + L   +R +EAN
Sbjct: 302 INGLCLHDRIDEAN 315



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 89/211 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LC   + ++A R++  M +     + IT+  +L    +  ++ EA  +
Sbjct: 223 PNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEI 282

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M  + + PD+  Y+ L+   C    +   + +   M  +    D  +Y+ L+ G C+
Sbjct: 283 FEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCK 342

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A RVE+   L R+M   G      TY  ++    ++G   +A +F        +  D   
Sbjct: 343 AKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWT 402

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           +  L   L       +A  I ++M K ++ +
Sbjct: 403 YNILLGGLCDNGLLEKALVIFEDMQKSEMDL 433



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 2/199 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LC   +IDEA ++ D+M   G     ++++ +++   + KR+E+   L
Sbjct: 293 PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKL 352

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  +  +   YN L+  +   G++        +M+   +  D  TY+ L+ G C 
Sbjct: 353 FRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCD 412

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +E+A V+   M      +   TY  V+  + + G    A         + +K D   
Sbjct: 413 NGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVT 472

Query: 281 FGSLGSKLI--GLERFNEA 297
           + ++ S L   GL+   EA
Sbjct: 473 YTTMMSGLCTKGLQHEVEA 491



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 69/138 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ +I  LCK +++++AL     +   G   + +T+  +++ L    R  +A  L
Sbjct: 188 PDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARL 247

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M + +++P++  Y+ LL A+   G +     + ++M    +  D  TY +L+ G C 
Sbjct: 248 LRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCL 307

Query: 221 AGRVEEAFVLLRRMVDDG 238
             R++EA  +   MV  G
Sbjct: 308 HDRIDEANQMFDLMVSKG 325



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S + F+ +LS + + K+ +    L + M+ + +  DL  +N ++  +C    ++    VL
Sbjct: 84  SIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVL 143

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            KM +     D  T  +LV G CR  RV +A  L+ +MV+ G       Y  ++ +L + 
Sbjct: 144 GKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKT 203

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                A+ F    G + I+ +   + +L + L    R+N+A  +L++M KR +
Sbjct: 204 RRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKI 256



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 5/183 (2%)

Query: 68  NTANTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRV 125
           N   TFN + N       +S     L ++ K G+ P +    +L+   C+  ++ +A+ +
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           VD M E G+    + ++ I+  L + +R+ +A    + +    + P++  Y  L+   C 
Sbjct: 178 VDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCN 237

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA---FVLLRRMVDDGQSVL 242
            G     + +L+ M + K+  +  TY AL+    + G+V EA   F  + RM  D   V 
Sbjct: 238 SGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVT 297

Query: 243 YST 245
           YS+
Sbjct: 298 YSS 300


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 4/210 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y T+I   CK+  I+ A  V D M   G   + +T++ +++   +   ME A  +
Sbjct: 251 PDVSTYTTIIRGYCKMGMIENAKNVFDEM---GCKPNLVTYNTMINGFCKKGLMESAMKI 307

Query: 161 MEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ M E     PD   Y  L+  YC +G L      +++M       +  TY+A++ G C
Sbjct: 308 VDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLC 367

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             G V+EA  ++ RM  +G     +T+  ++  L  +G    A + +    G  ++ D +
Sbjct: 368 LNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAK 427

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +G + ++   + + ++A  +LKEM  R +
Sbjct: 428 AYGVVVNEYCKIGKADDAISLLKEMKSRGI 457



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 93/207 (44%), Gaps = 1/207 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS-AITFHPILSVLTRGKRMEEAWG 159
           P    Y+T+I   CK   ++ A+++VD M E    +   +T+  ++    +   +EEA  
Sbjct: 283 PNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMK 342

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            ME M      P++  YN ++   C  GN+     ++ +M    L  +  T+ +++ G C
Sbjct: 343 YMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLC 402

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             G++++A   L+ MV  G       Y  V+    ++G    A+  +     R I     
Sbjct: 403 VVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVS 462

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            F ++   L+   + ++A  IL++M +
Sbjct: 463 SFNAVFRILVESGKTDKAGLILRQMKQ 489



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E+++ ++  +  T    +   P    Y TLI   CK  +++EA++ ++ M       + +
Sbjct: 302 ESAMKIVDQMTET----EDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVL 357

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T++ I+  L     ++EA  +M  M+   +  ++  +  +L   C  G L   +  LK+M
Sbjct: 358 TYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEM 417

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
               + ADA+ Y  +V   C+ G+ ++A  LL+ M   G +   S++  V   L+  G
Sbjct: 418 VGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESG 475



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  LC    +DEA R++  M   G   +  T   IL  L    ++++A   
Sbjct: 354 PNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARH 413

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M  + +  D  AY  ++  YC  G       +LK+M+   +     +++A+      
Sbjct: 414 LKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVE 473

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +G+ ++A ++LR+M   G +  + +Y+ V+  L +
Sbjct: 474 SGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCK 508



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/286 (19%), Positives = 127/286 (44%), Gaps = 19/286 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLE-TVRYLLNKRARDCCFNTANTFNFIT-------NTENSLS 84
           P +  Y  L++      +LE  ++Y+    +R+C  N   T+N I        N + +  
Sbjct: 319 PDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVL-TYNAIIYGLCLNGNVDEAKR 377

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +++ +     RL+      + + +++  LC + K+D+A R +  M   G    A  +  +
Sbjct: 378 MMTRM-----RLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVV 432

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++   +  + ++A  L++ MK   ++P ++++N +       G       +L++M++   
Sbjct: 433 VNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGC 492

Query: 205 GADARTYDALVLGACRA-GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
             +  +Y  ++ G C+A GR+ E    +  M  +G  +  S Y+ ++      G    A+
Sbjct: 493 TPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAM 552

Query: 264 KFVMVCGGRDIK--LDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +  + C   D+   ++ E F +    L   E+  E     +EM++R
Sbjct: 553 R--LFCEMLDMGYVINLESFLAFVKGLSAKEKAFEVEKFFEEMSRR 596



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
           G    +++ IL V  +  R+  A  +  +++KE  V PD++ Y  ++  YC  G +    
Sbjct: 214 GRCLFSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAK 273

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS-TYAHVMGA 252
            V  +M       +  TY+ ++ G C+ G +E A  ++ +M +    +  + TY  ++  
Sbjct: 274 NVFDEM---GCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDG 330

Query: 253 LLRLGYYAQAVKFV 266
             + G   +A+K++
Sbjct: 331 YCKRGELEEAMKYM 344


>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 72/138 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P       LI  LCK   +D A+R+  IMAE G   +A+T+  ++   ++   +E ++ L
Sbjct: 640 PNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKL 699

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M+E  +SP + +Y+ ++   C +G +   + +  +  + KL  D   Y  L+ G C+
Sbjct: 700 FEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCK 759

Query: 221 AGRVEEAFVLLRRMVDDG 238
            GR+ EA +L   M+ +G
Sbjct: 760 VGRLVEAALLYEHMLRNG 777



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 70/136 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I   C L+++DEA R+ +++    FG + +T   ++ VL +   M+ A  +
Sbjct: 605 PDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRM 664

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M E    P+   Y  L+  +    ++  +  + ++M+E+ +     +Y  ++ G C+
Sbjct: 665 FSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCK 724

Query: 221 AGRVEEAFVLLRRMVD 236
            GRV+EA  +  + +D
Sbjct: 725 RGRVDEATNIFHQAID 740



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 86/210 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY TLI    K   +    ++       G  L  + F   + V  +   +  A  +
Sbjct: 319 PDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVV 378

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    +SP++  Y  L+   C  G +    G+  ++ +  +     TY +L+ G C+
Sbjct: 379 YKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCK 438

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +   F L   M+  G       Y  ++  L + G    A++F +   G+ I+L+  +
Sbjct: 439 CGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVV 498

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F SL      L RF+EA  + + M    +K
Sbjct: 499 FNSLIDGWCRLNRFDEALKVFRLMGIYGIK 528



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 9/155 (5%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR----GKRMEEAWG- 159
            +++LI   C+L + DEAL+V  +M   G      TF  ++ V        K M+   G 
Sbjct: 498 VFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEDAFCKHMKPTIGL 557

Query: 160 -LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L ++M+  ++S D+   N ++        +   S     + E K+  D  TY+ ++ G 
Sbjct: 558 QLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGY 617

Query: 219 CRAGRVEEA---FVLLRRMVDDGQSVLYSTYAHVM 250
           C   R++EA   F LL+       +V  +   HV+
Sbjct: 618 CSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVL 652



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 64/150 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC+  +I EA  +   + + G   S +T+  ++    +   +   + L
Sbjct: 389 PNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL 448

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M ++   PD+  Y  L+     +G +        KM  + +  +   +++L+ G CR
Sbjct: 449 YEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCR 508

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
             R +EA  + R M   G     +T+  VM
Sbjct: 509 LNRFDEALKVFRLMGIYGIKPDVATFTTVM 538



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 70/156 (44%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + +I  L K  +I++A +  + + EG      +T++ ++      +R++EA  + E++K 
Sbjct: 576 NVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKV 635

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
               P+      L+   C   ++     +   M E+    +A TY  L+    ++  +E 
Sbjct: 636 TPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEG 695

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +F L   M + G S    +Y+ ++  L + G   +A
Sbjct: 696 SFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEA 731



 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 28/138 (20%), Positives = 56/138 (40%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
            CK  K    L++ D+M            + ++ +L +  R+E+A      + E ++ PD
Sbjct: 547 FCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPD 606

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  YN ++  YC    L     + + ++    G +  T   L+   C+   ++ A  +  
Sbjct: 607 IVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFS 666

Query: 233 RMVDDGQSVLYSTYAHVM 250
            M + G      TY  +M
Sbjct: 667 IMAEKGSKPNAVTYGCLM 684



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   + +T+  ++  L +  R+ EA+G+   + +  + P +  Y+ L+  +C  GNL + 
Sbjct: 386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSG 445

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVM 250
             + + M +     D   Y  LV G  + G +  A     +M+  GQS+  +   +  ++
Sbjct: 446 FALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKML--GQSIRLNVVVFNSLI 503

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
               RL  + +A+K   + G   IK D   F ++
Sbjct: 504 DGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTV 537


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  L     +++A  +++ M   GF  S++T   +L   ++ +R++    +
Sbjct: 622 PNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDI 681

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M    +  D+T YN LL   C+ G     + VL++M    +  D  T++AL+LG C+
Sbjct: 682 HEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCK 741

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +  ++ AF    +M+    S   +T+  ++G L  +G   +A
Sbjct: 742 SSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEA 783



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 74/153 (48%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++TLI   C++     AL V D M   G  +  + ++ +++   R  +++ A G++++M
Sbjct: 171 GWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMM 230

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           KE  V P++  Y   +  YC    +     + + M    +  D  T  ALV G CR GR 
Sbjct: 231 KEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRF 290

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            EA+ L R M   G +  + TY  ++ +L + G
Sbjct: 291 SEAYALFREMDKVGAAPNHVTYCTLIDSLAKAG 323



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 120/291 (41%), Gaps = 3/291 (1%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R   K GA P+  T     D +  AG  ++L ++   +  R       T          +
Sbjct: 298 REMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQ 357

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
                + D  R  A  D   P    Y  LI  LCK   +DEA +V+  M E     + +T
Sbjct: 358 GKTDEVKDTLR-FALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVT 416

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC-FKGNLTATSGVLKKM 199
           F  +++   +   +++A     +MKE  ++P++  Y  L+  +  F+G   A   V   M
Sbjct: 417 FSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALE-VYHDM 475

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             E +  +    D+LV G  + G++EEA  L +     G S+ +  Y  ++  L + G  
Sbjct: 476 LCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDM 535

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             A KF      R++  D  ++    + L  L +F EA   L EM    LK
Sbjct: 536 PTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLK 586



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 1/213 (0%)

Query: 98  KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +G P     Y+TL+   C+  ++D A  V+D+M E G   +  T+ P +    R K +EE
Sbjct: 198 QGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEE 257

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+ L E M    V  D+   + L+   C  G  +    + ++M++     +  TY  L+ 
Sbjct: 258 AFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLID 317

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
              +AGR +E   LL  MV  G  +   TY  +M  L + G   +    +      ++  
Sbjct: 318 SLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSP 377

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +   +  L   L      +EA  +L EM ++ +
Sbjct: 378 NGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSI 410



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 8/216 (3%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           +A L    P   AY+ L   L  L     A  V+  M + G     +T + +L+ L R  
Sbjct: 93  IALLRSSRPTTVAYNIL---LAALSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNG 149

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           +++ A  L +    I  + D+  +N L+  YC  G+  A   V  +M  + L  D   Y+
Sbjct: 150 QVDAAAALADRGGGIH-ALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYN 208

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCG 270
            LV G CRAG+V+ A  +L  M + G     +TY   +    R     +A      MV  
Sbjct: 209 TLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRN 268

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           G  + LD     +L + L    RF+EA  + +EM+K
Sbjct: 269 G--VLLDVVTLSALVAGLCRDGRFSEAYALFREMDK 302



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 55/128 (42%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           D+L+  L +  KI+EA+ +    +  G  L  + +  ++  L +   M  A+   + + +
Sbjct: 488 DSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + PD   YN  +   C  G        L +M    L  D  TY+ +++  CR G   +
Sbjct: 548 RNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAK 607

Query: 227 AFVLLRRM 234
           A  LL  M
Sbjct: 608 ALKLLHEM 615



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 67/159 (42%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+TL+  LC      +A  V++ M   G     ITF+ ++    +   ++ A+     
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    +SP++  +N LL      G +     VL +ME+  L  +  TYD L  G  +   
Sbjct: 755 MLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSN 814

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             EA  L   MV  G     STY  ++    + G   QA
Sbjct: 815 KVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQA 853



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI  L K   +  A +    + +      A+ ++  ++ L    + +EA   +  M+
Sbjct: 522 YTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMR 581

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            + + PD + YN ++ ++C KG       +L +M+   +  +  TY+ LV G    G VE
Sbjct: 582 NMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVE 641

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           +A  LL  MV  G S    T+  V+ A
Sbjct: 642 KAKYLLNEMVSAGFSPSSLTHRRVLQA 668



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 3/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y   I   C+ K ++EA  + + M   G  L  +T   +++ L R  R  EA+ L
Sbjct: 237 PNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYAL 296

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M ++  +P+   Y  L+ +    G       +L +M    +  D  TY AL+    +
Sbjct: 297 FREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGK 356

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+ +E    LR  + D  S    TY  ++ AL +     +A + ++    + I  +   
Sbjct: 357 QGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVT 416

Query: 281 FGSLGSKLIG---LERFNEANFILKE 303
           F S+ +  +    L++  E   ++KE
Sbjct: 417 FSSVINGFVKRGLLDKATEYKRMMKE 442



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 4/213 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  L K  +  E L ++  M   G  +  +T+  ++  L +  + +E    
Sbjct: 307 PNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDT 366

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +       +SP+   Y  L+ A C   N+     VL +MEE+ +  +  T+ +++ G  +
Sbjct: 367 LRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVK 426

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
            G +++A    R M + G +    TY  ++    +      A++    M+C G  +K++ 
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEG--VKVNK 484

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            +  SL + L    +  EA  + K+ +   L +
Sbjct: 485 FIVDSLVNGLRQNGKIEEAMALFKDASGSGLSL 517



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 83/213 (38%), Gaps = 1/213 (0%)

Query: 96  LDKGFPRKSAYDTLIGRLC-KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +  GF   S     + + C + +++D  L + + M   G       ++ +L VL      
Sbjct: 651 VSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMT 710

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  ++E M    ++PD   +N L+  +C   +L        +M  + +  +  T++ L
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTL 770

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    GR+ EA  +L  M   G      TY  +     +     +A++      G+  
Sbjct: 771 LGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGF 830

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                 + +L S         +A  + K+M KR
Sbjct: 831 VPKVSTYNALISDFTKAGMMTQAKELFKDMQKR 863



 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 70/185 (37%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+  I  LC L K  EA   +  M   G      T++ ++    R     +A  
Sbjct: 551 LPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALK 610

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  MK   + P+L  YN L+      G +     +L +M        + T+  ++    
Sbjct: 611 LLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACS 670

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           ++ R++    +   M++ G     + Y  ++  L   G   +A   +    G  I  DT 
Sbjct: 671 QSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTI 730

Query: 280 LFGSL 284
            F +L
Sbjct: 731 TFNAL 735



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 55/117 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + ++TL+G L  + +I EA  V+  M + G   + +T+  + +   +     EA  L
Sbjct: 762 PNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRL 821

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
              M      P ++ YN L++ +   G +T    + K M++  +   + TYD LV G
Sbjct: 822 YCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSG 878



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 59/146 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI   CK   +D A      M       +  TF+ +L  L    R+ EA  +
Sbjct: 727 PDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTV 786

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  + P+   Y+ L T +  + N      +  +M  +       TY+AL+    +
Sbjct: 787 LIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTK 846

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
           AG + +A  L + M   G      TY
Sbjct: 847 AGMMTQAKELFKDMQKRGVHPTSCTY 872


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 72/138 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P       LI  LCK   +D A+R+  IMAE G   +A+T+  ++   ++   +E ++ L
Sbjct: 669 PNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKL 728

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M+E  +SP + +Y+ ++   C +G +   + +  +  + KL  D   Y  L+ G C+
Sbjct: 729 FEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCK 788

Query: 221 AGRVEEAFVLLRRMVDDG 238
            GR+ EA +L   M+ +G
Sbjct: 789 VGRLVEAALLYEHMLRNG 806



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 70/136 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I   C L+++DEA R+ +++    FG + +T   ++ VL +   M+ A  +
Sbjct: 634 PDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRM 693

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M E    P+   Y  L+  +    ++  +  + ++M+E+ +     +Y  ++ G C+
Sbjct: 694 FSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCK 753

Query: 221 AGRVEEAFVLLRRMVD 236
            GRV+EA  +  + +D
Sbjct: 754 RGRVDEATNIFHQAID 769



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 86/210 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY TLI    K   +    ++       G  L  + F   + V  +   +  A  +
Sbjct: 319 PDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVV 378

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    +SP++  Y  L+   C  G +    G+  ++ +  +     TY +L+ G C+
Sbjct: 379 YKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCK 438

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +   F L   M+  G       Y  ++  L + G    A++F +   G+ I+L+  +
Sbjct: 439 CGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVV 498

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F SL      L RF+EA  + + M    +K
Sbjct: 499 FNSLIDGWCRLNRFDEALKVFRLMGIYGIK 528



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +++LI   C+L + DEAL+V  +M   G      TF  ++ V     R+EEA  L   M
Sbjct: 498 VFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRM 557

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            ++ + PD  AY  L+ A+C     T    +   M+  K+ AD    + ++    +  R+
Sbjct: 558 FKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRI 617

Query: 225 EEAFVLLRRMVD 236
           E+A      +++
Sbjct: 618 EDASKFFNNLIE 629



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 62/150 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY TLI   CK  K    L++ D+M            + ++ +L +  R+E+A   
Sbjct: 564 PDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKF 623

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              + E ++ PD+  YN ++  YC    L     + + ++    G +  T   L+   C+
Sbjct: 624 FNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCK 683

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
              ++ A  +   M + G      TY  +M
Sbjct: 684 NNDMDGAIRMFSIMAEKGSKPNAVTYGCLM 713



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 4/180 (2%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   + +T+  ++  L +  R+ EA+G+   + +  + P +  Y+ L+  +C  GNL + 
Sbjct: 386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSG 445

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVM 250
             + + M +     D   Y  LV G  + G +  A     +M+  GQS+  +   +  ++
Sbjct: 446 FALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKML--GQSIRLNVVVFNSLI 503

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               RL  + +A+K   + G   IK D   F ++    I   R  EA F+   M K  L+
Sbjct: 504 DGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLE 563



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 64/150 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC+  +I EA  +   + + G   S +T+  ++    +   +   + L
Sbjct: 389 PNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL 448

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M ++   PD+  Y  L+     +G +        KM  + +  +   +++L+ G CR
Sbjct: 449 YEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCR 508

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
             R +EA  + R M   G     +T+  VM
Sbjct: 509 LNRFDEALKVFRLMGIYGIKPDVATFTTVM 538



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 70/156 (44%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + +I  L K  +I++A +  + + EG      +T++ ++      +R++EA  + E++K 
Sbjct: 605 NVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKV 664

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
               P+      L+   C   ++     +   M E+    +A TY  L+    ++  +E 
Sbjct: 665 TPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEG 724

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +F L   M + G S    +Y+ ++  L + G   +A
Sbjct: 725 SFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEA 760


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 125/278 (44%), Gaps = 3/278 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVLSDLCR 91
           P   + ++L+N  G    +E +  + ++     C  T  ++N +      S + +S++  
Sbjct: 336 PDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSS 395

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              ++  D   P +  Y  LI   CK  ++++AL +++ M E GF      +  +++ L 
Sbjct: 396 WFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALG 455

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + KR E A  L + +KE   +     Y  ++  +   G L+    +  +M+ +  G D  
Sbjct: 456 KAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVY 515

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
            Y+AL+ G  +AG + EA  LLR+M ++G     +++  ++    R G   +A++     
Sbjct: 516 AYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETI 575

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
               IK D   + +L         F EA  +++EM  +
Sbjct: 576 KHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDK 613



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 114/273 (41%), Gaps = 45/273 (16%)

Query: 32  EPTSAYYDD----LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
           +PTS+ Y+     L+    HE+  E    + N+     CF    T++ + ++   L    
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD---CFPDTITYSALISSYEKLGRND 250

Query: 88  DLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
              R    +      P +  Y TL+G   K+ K+++AL + + M   G   +  T+  ++
Sbjct: 251 SAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310

Query: 146 SVLTRGKRMEEAWG-------------------LMEVMKEI----------------RVS 170
             L +  R++EA+G                   LM ++ ++                R +
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT 370

Query: 171 PDLTAYNYLLTA-YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           P + +YN ++ A +  K +++  S    KM+ + +     TY  L+ G C+  RVE+A +
Sbjct: 371 PTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALL 430

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           LL  M + G     + Y  ++ AL +   Y  A
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 463



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 114/269 (42%), Gaps = 3/269 (1%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHER-DLETVRYLLNKRARDCCFNTANTFNFIT 77
           +T  F++ G +   PT   Y+ ++ A    +  +  V    +K   D    +  T++ + 
Sbjct: 357 LTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILI 416

Query: 78  NTENSLSVLSDLCRTLARLD-KGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           +     + +      L  +D KGFP   +AY +LI  L K K+ + A  +   + E    
Sbjct: 417 DGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGN 476

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           +S+  +  ++    +  ++ EA  L   MK     PD+ AYN L++     G +   + +
Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSL 536

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L+KMEE    AD  +++ ++ G  R G    A  +   +   G      TY  ++G    
Sbjct: 537 LRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAH 596

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            G + +A + +     +  + D   + S+
Sbjct: 597 AGMFEEAARMMREMKDKGFEYDAITYSSI 625



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 67/148 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I    K  K+ EA+ + + M   G G     ++ ++S + +   + EA  L+  M+
Sbjct: 482 YAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKME 541

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E     D+ ++N +L  +   G       + + ++   +  D  TY+ L+     AG  E
Sbjct: 542 ENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFE 601

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           EA  ++R M D G      TY+ ++ A+
Sbjct: 602 EAARMMREMKDKGFEYDAITYSSILDAV 629



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 19/194 (9%)

Query: 82  SLSVLSDLCRTLARLD---------------KGFPRKSAYDTLIGRLCKLKKIDEALRV- 125
           S +VLS+L + L R                 K  P  S Y+++I  L +  + ++   V 
Sbjct: 161 SPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVY 220

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
            ++  EG      IT+  ++S   +  R + A  L + MK+  + P    Y  LL  Y  
Sbjct: 221 TEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFK 280

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VL 242
            G +     + ++M+         TY  L+ G  +AGRV+EA+   + M+ DG +   V 
Sbjct: 281 VGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVF 340

Query: 243 YSTYAHVMGALLRL 256
            +   +++G + R+
Sbjct: 341 LNNLMNILGKVGRV 354



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 11/200 (5%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSVL 86
           + A   +LV A G  + +     +  +     C  T++T+N +          E    V 
Sbjct: 161 SPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVY 220

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           +++C         FP    Y  LI    KL + D A+R+ D M +     +   +  +L 
Sbjct: 221 TEMCNE----GDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLG 276

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           +  +  ++E+A  L E MK    SP +  Y  L+      G +    G  K M  + L  
Sbjct: 277 IYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTP 336

Query: 207 DARTYDALVLGACRAGRVEE 226
           D    + L+    + GRVEE
Sbjct: 337 DVVFLNNLMNILGKVGRVEE 356



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 7/206 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + +++L+     + G FP  P  A Y  L+NA G  +  E    L  +   +    ++  
Sbjct: 425 VEKALLLLEEMDEKG-FP--PCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRV 481

Query: 73  FNFITNTENSLSVLS---DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           +  +         LS   DL   +     G P   AY+ L+  + K   I+EA  ++  M
Sbjct: 482 YAVMIKHFGKCGKLSEAVDLFNEMKNQGSG-PDVYAYNALMSGMVKAGMINEANSLLRKM 540

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E G      + + IL+   R      A  + E +K   + PD   YN LL  +   G  
Sbjct: 541 EENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMF 600

Query: 190 TATSGVLKKMEEEKLGADARTYDALV 215
              + ++++M+++    DA TY +++
Sbjct: 601 EEAARMMREMKDKGFEYDAITYSSIL 626


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+DEA  + + M + G   + +T
Sbjct: 184 LGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    + ++++ A  + + M    +SPDL  YN L+   C KG L     ++ +M 
Sbjct: 244 FTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMI 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              L  D  +Y  L+ G+C+ G +E A  L  +M+ +   +    Y  ++  L R G  +
Sbjct: 304 MNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAS 363

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D   +  + ++         A+ +L+EM +
Sbjct: 364 DAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQR 409



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TLI    KL  +DE  R+   M   G      T+  +++ L +  +++EA  L
Sbjct: 169 PSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P+   +  L+  +C    +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++   L+  M+ +G      +Y  ++    + G    A++         I+LD   
Sbjct: 289 KGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R ++A  +L+EM    LK
Sbjct: 349 YTALISCLCREGRASDAEKMLREMLSVGLK 378



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 7/216 (3%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           SGA PD  T   Y  L+N    E  L+    L N+   +       TF  + +       
Sbjct: 200 SGAQPDVYT---YSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEK 256

Query: 86  LSDLCRTLAR--LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           + DL   + +  L +G  P    Y+TLI  LCK  ++ +   ++D M   G     I++ 
Sbjct: 257 V-DLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A  L   M +  +  D  AY  L++  C +G  +    +L++M   
Sbjct: 316 TLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  D  TY  ++   C+    + A  LLR M  DG
Sbjct: 376 GLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           E G+  S   F+ ++    +   M  A  + + + +  + P + ++N L+  Y   G+L 
Sbjct: 129 ECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLD 188

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYA 247
               +   M       D  TY  L+ G C+ G+++EA  L   M+D+G     V ++T  
Sbjct: 189 EGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLI 248

Query: 248 H 248
           H
Sbjct: 249 H 249


>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
          Length = 595

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 10/180 (5%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           A+ F    N + ++ +  ++       D G  P    Y T+I  L +  ++ +A      
Sbjct: 319 ASAFLHCNNVDMAMELFHEMA------DHGHRPDAVMYFTMISGLTQAGRLLDACTTAAS 372

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M + GF L A  ++ ++    R K++ EA+ L+E MK + + PD+  YN LL+  C  G+
Sbjct: 373 MKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGD 432

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD---DGQSVLYST 245
            +A   +L  M ++       T+  LV G C+AG+ +EA  + R M +      +V+Y+T
Sbjct: 433 FSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNT 492



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 91/204 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TL         +D A+ +   MA+ G    A+ +  ++S LT+  R+ +A      MK
Sbjct: 315 YSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMK 374

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +     D  AYN L+  +C K  L     +L++M+   L  D  TY+ L+ G C+AG   
Sbjct: 375 KAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFS 434

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
               LL  M+DDG      T+  ++    + G   +A++         I+ +T ++ +L 
Sbjct: 435 AVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLI 494

Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
             L      + A  +  EM ++++
Sbjct: 495 DFLCKSREVDVAIKLFDEMREKNV 518



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 16/255 (6%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL 123
           C   A T+N + +    +  +   C+ +AR++K    P     +T+IG LC++ ++  AL
Sbjct: 236 CAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAAL 295

Query: 124 ------RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
                 R V   A G    +A+T+  + S       ++ A  L   M +    PD   Y 
Sbjct: 296 EFFREKRTVWPEARG----NAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYF 351

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            +++     G L         M++     DA+ Y+ L+ G CR  ++ EA+ LL  M   
Sbjct: 352 TMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGV 411

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFN 295
           G      TY  ++  L + G ++   + +  M+  G    + T  FG+L        + +
Sbjct: 412 GLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVT--FGTLVHGYCKAGKTD 469

Query: 296 EANFILKEMNKRDLK 310
           EA  I + M++  ++
Sbjct: 470 EALRIFRSMDEARIQ 484



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  LCK         ++  M + G   S +TF  ++    +  + +EA  +
Sbjct: 415 PDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRI 474

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E R+ P+   YN L+   C    +     +  +M E+ + A+  TY+AL+ G   
Sbjct: 475 FRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQD 534

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
               E+AF L+ RM ++  +  Y T   +M  L  +G
Sbjct: 535 KKMAEKAFELMDRMREERCTPNYVTVDVLMEWLPEIG 571



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 106/251 (42%), Gaps = 41/251 (16%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAW 158
           P    Y  L+  LCK   + +AL+V+D M+  G  +       + ++  L +  R+++A 
Sbjct: 164 PDVVTYGILLNGLCKSGHVGDALKVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAI 223

Query: 159 GLM-EVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
             + E M+ +   +P+   YN L  A+C  G++     ++ +ME+E +  +  T + ++ 
Sbjct: 224 IFVDERMRHVHGCAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIG 283

Query: 217 GACRAGRVEEAFVLLR--RMV---DDGQSVLYSTYA-------------HVMGALLRLGY 258
           G CR GRV  A    R  R V     G +V YST A              +   +   G+
Sbjct: 284 GLCRVGRVGAALEFFREKRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGH 343

Query: 259 YAQAVK-FVMVCG----GR--------------DIKLDTELFGSLGSKLIGLERFNEANF 299
              AV  F M+ G    GR                KLD + +  L       ++ +EA  
Sbjct: 344 RPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYE 403

Query: 300 ILKEMNKRDLK 310
           +L+EM    L+
Sbjct: 404 LLEEMKGVGLQ 414



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
           +PD++ +N LLTA    GNL   + +   M +  +  D  TY  L+ G C++G V +A  
Sbjct: 128 APDISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALK 187

Query: 230 LLRRMVDDGQSVL--YSTYAHVMGALLRLGYYAQAVKFV 266
           +L RM   G  V    +    V+  L ++G   QA+ FV
Sbjct: 188 VLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFV 226



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 39/178 (21%)

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           D +A G        F+ +L+ L R   +     L   M++  V PD+  Y  LL   C  
Sbjct: 120 DSLASGAPAPDISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKS 179

Query: 187 GNLTATSGVLKKMEEE-------------------KLG--------------------AD 207
           G++     VL +M                      K+G                     +
Sbjct: 180 GHVGDALKVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPN 239

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           A TY+ L    CR G +  A  ++ RM  +G +    T   ++G L R+G    A++F
Sbjct: 240 AVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEF 297


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+ +I RLCK +K + AL +  +M +     S + +  ++    +    ++A  
Sbjct: 532 FPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALM 591

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M +I V+PD+ AY  L+   C +  +     + KKM E  +  D  +Y +++ G C
Sbjct: 592 LYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFC 651

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           R G + +A+ L   M+  G      TY  ++    ++ 
Sbjct: 652 RIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMN 689



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 12/241 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSV 85
           P+ A  + +++A   E  +E    L+N+      F    T+N + N       +E +L +
Sbjct: 498 PSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALEL 557

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
              + +         P    Y TLI    K     +AL +   M + G     + +  ++
Sbjct: 558 FPLMLKR-----NVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILI 612

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           ++L    RM EA+ L + M E  ++PD  +Y  ++  +C  G++     +  +M +    
Sbjct: 613 NILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHL 672

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
               TY +LV G C+  R++ A +L+  M   G +    TY  ++ A  R G   +A++ 
Sbjct: 673 PTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEM 732

Query: 266 V 266
           +
Sbjct: 733 L 733



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 3/222 (1%)

Query: 26  SGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
            G FP+  T +A  + L      ER LE    +L +         +   +      NS  
Sbjct: 529 QGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQK 588

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            L    R L       P   AY  LI  LC   ++ EA  +   M E G     I++  +
Sbjct: 589 ALMLYARMLK--IGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSV 646

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++   R   M +AW L   M +    P +  Y  L+  YC    +     ++ +M+ + +
Sbjct: 647 IAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGI 706

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             D  TY+ L+    R G +++A  +L  M ++G    + TY
Sbjct: 707 TPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTY 748



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 36/214 (16%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           D  R+L   + G      Y+ +I  LCK  ++DEAL+V++ M   G      T+  ++  
Sbjct: 311 DFVRSLISAN-GLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHG 369

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSP-----------------------------------D 172
             +   +E+   L+E MK   + P                                   D
Sbjct: 370 FCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYD 429

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
            TAY+ L+  +C +G+L +   ++++M    L  D   +++LV G C+ G    A     
Sbjct: 430 QTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFN 489

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            M++ G     +T   ++ A  R G   +A+  +
Sbjct: 490 MMLEGGILPSIATCNVIIDAHCREGRVEEALNLM 523



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 37/208 (17%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T I  LC++  ++ AL  V  +      ++   ++ I+  L +   ++EA  +
Sbjct: 288 PTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKV 347

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK----------------- 203
           +E MK   +SPD+  Y+ L+  +C +G++     ++++M+                    
Sbjct: 348 LEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCK 407

Query: 204 -------------LGA-----DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
                        LGA     D   Y  L+ G C  G ++ A  L+  MV +  +   S 
Sbjct: 408 KRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSN 467

Query: 246 YAHVMGALLRLGYYAQAVKF--VMVCGG 271
           +  ++    ++G +  A++F  +M+ GG
Sbjct: 468 FESLVHGFCKMGLWVNALEFFNMMLEGG 495



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 51/114 (44%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A  +++ M   G   + +T+   +  L R   +E A   +  +       ++  YN ++
Sbjct: 273 QATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAII 332

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
              C KG L     VL++M+   +  D  TY  L+ G C+ G VE+   L+  M
Sbjct: 333 HGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEM 386



 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           ++AY  LI   C    +D A ++++ M           F  ++    +      A     
Sbjct: 430 QTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFN 489

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
           +M E  + P +   N ++ A+C +G +     ++ +M+ + +  +  TY+A++   C+  
Sbjct: 490 MMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKER 549

Query: 223 RVEEAFVLLRRMVDDG---QSVLYST 245
           + E A  L   M+        V+YST
Sbjct: 550 KSERALELFPLMLKRNVLPSVVVYST 575


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+   CK K + +A  + D M + G   +  T++ ++    + + ME+A+ L
Sbjct: 304 PNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFAL 363

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M    V PD++ YN L+   C KG+L A   ++ +M+ + L AD  TY+ L+   C 
Sbjct: 364 YRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCN 423

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G +++A  LL  M   G      TY  ++    + G    A+  
Sbjct: 424 KGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNL 468



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 95/216 (43%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D   P +  ++ LI   CK K +  A++V   M   G   + +T++ +++ L    ++
Sbjct: 228 RADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKV 287

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L + M    + P++  +N LL  +C    +     +   M ++ +  +  TY+ L
Sbjct: 288 NEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNIL 347

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   C+   +E+AF L R M+  G     STY  ++  L R G    A   V     + +
Sbjct: 348 IDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHL 407

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           K D   +  L   L       +A  +L EM ++ LK
Sbjct: 408 KADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLK 443



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KG  P  S Y+ LI  LC+   ++ A  +V  M         IT++ ++  L     M
Sbjct: 368 LGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEM 427

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M    + P    YN ++  YC +GNL A   +  +ME+    A+  TY+ L
Sbjct: 428 KKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVL 487

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           + G C+  ++E+A  LL  M++ G      TY  V   ++  G+
Sbjct: 488 IKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGF 531



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 75/139 (53%), Gaps = 3/139 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++ +I  LCK+ K+++A  +++ M   G   + IT++ ++    +  ++ + +  
Sbjct: 161 PTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKA 220

Query: 161 MEVMKEIR---VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++KE+R   + P+   +N L+  +C   N++A   V  +M  + +  +  TY++L+ G
Sbjct: 221 DAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLING 280

Query: 218 ACRAGRVEEAFVLLRRMVD 236
            C  G+V EA  L  +MV+
Sbjct: 281 LCNNGKVNEATALRDQMVN 299



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 3/208 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           Y+TLI   CK+ KI +  +   I+ E    G   + +TF+ ++    + K +  A  +  
Sbjct: 201 YNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFA 260

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M    V P++  YN L+   C  G +   + +  +M    L  +  T++AL+ G C+  
Sbjct: 261 EMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNK 320

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
            V++A  L   M   G +   +TY  ++ A  +      A     +  G+ +  D   + 
Sbjct: 321 MVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYN 380

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDLK 310
            L + L        A  ++ EM+ + LK
Sbjct: 381 CLIAGLCRKGDLEAARNLVSEMDTKHLK 408



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 80/175 (45%), Gaps = 3/175 (1%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G  LS  + +P++S L +   + +   + + M   R+ P L ++N ++   C  G L   
Sbjct: 123 GLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKA 182

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF---VLLRRMVDDGQSVLYSTYAHV 249
             +++ M+   + A+  TY+ L+ G C+ G++ + +    +L+ M  DG      T+  +
Sbjct: 183 GDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNIL 242

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +    +    + A+K       + +K +   + SL + L    + NEA  +  +M
Sbjct: 243 IDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQM 297



 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT------- 79
           G  PD  T   Y+ L+     + DLE  R L+++           T+N + ++       
Sbjct: 371 GVCPDVST---YNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEM 427

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           + +L +L ++CR      KG  P +  Y+T+I   CK   +  AL +   M + G   + 
Sbjct: 428 KKALRLLDEMCR------KGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANV 481

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T++ ++    +  ++E+A GL+  M E  + P+   Y  +      KG +    G L K
Sbjct: 482 ATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPDIEGHLYK 541

Query: 199 M 199
           +
Sbjct: 542 V 542


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +D L+    ++ ++ E LR    M   GF  + IT + +L+ L +    +  W + E M
Sbjct: 235 VFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEM 294

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +   ++P+L  +N L    C  G+    +  L+KMEEE    D  TY+ L+   CR GR+
Sbjct: 295 ERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRL 354

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++AF L + M   G      +Y  +M  L + G   +A +       R +  D   + +L
Sbjct: 355 DDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTL 414

Query: 285 GSKLIGLERFNEANFILKEM 304
                   +  E+  +L +M
Sbjct: 415 IHGYCKEGKMQESRSLLHDM 434



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 71/140 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L   LCK     +  + ++ M E GF    +T++ +++   R  R+++A+ L
Sbjct: 301 PNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYL 360

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M    V PDL +Y  L+   C +G +     +  +M    L  D  TY+ L+ G C+
Sbjct: 361 YKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCK 420

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
            G+++E+  LL  M+ +G S
Sbjct: 421 EGKMQESRSLLHDMIWNGIS 440



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 13/233 (5%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           ++++  CR   RLD  F            P   +Y  L+  LCK  ++ EA ++   M  
Sbjct: 343 TLINSYCRK-GRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVH 401

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T++ ++    +  +M+E+  L+  M    +SPD      L+  Y  +G   +
Sbjct: 402 RGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLS 461

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              ++ +++   +      Y  L++  CR  R   A  LL RM  DG       Y  ++ 
Sbjct: 462 ALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIK 521

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +  +    A+A+   M    ++IK +   + ++   L  L R  E   ++ EM
Sbjct: 522 SFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEM 574


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 97/209 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y TLI   CK    + A  ++++M+  GF  +  T++ I++ L +  R++EA+ +
Sbjct: 379 PNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKM 438

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E   +  + PD   YN L++ +C + N+     +  KM +  +  D  +Y  L+   CR
Sbjct: 439 LEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCR 498

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R++E+ +     V  G      TY  ++    R G    A+KF           D+  
Sbjct: 499 ENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSIT 558

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +G++ S L    + +EA  +   M ++ L
Sbjct: 559 YGAIISGLCKQSKRDEARSLYDSMIEKGL 587



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 6/221 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D G  P    +  +I  LCK   I +A  +++ M   G+  +  T   ++  L +    
Sbjct: 267 VDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWT 326

Query: 155 EEAWGL-MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           E+A+ L +++++     P++  Y  +++ YC +  L     +L +M+E+ L  +  TY  
Sbjct: 327 EKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTT 386

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+ G C+AG  E A+ L+  M  +G S    TY  ++  L + G   +A K +       
Sbjct: 387 LIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNG 446

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
           +K D   +  L S+    E   +A  +  +M    LK+G +
Sbjct: 447 LKPDKFTYNILMSEHCKQENIRQALALFNKM----LKIGIQ 483



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 69/163 (42%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           L R +   P    Y  +I   C+  K++ A  ++  M E G   +  T+  ++    +  
Sbjct: 336 LVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAG 395

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
             E A+ LM +M     SP+L  YN ++   C +G +     +L+   +  L  D  TY+
Sbjct: 396 NFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYN 455

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            L+   C+   + +A  L  +M+  G      +Y  ++    R
Sbjct: 456 ILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCR 498



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 99/247 (40%), Gaps = 38/247 (15%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT-RGKRMEEAWG 159
           P   +Y  ++   CK+  I EA + + +M E GF +   TF  I+S  + +G      W 
Sbjct: 203 PDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWY 262

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNL--------------------TATSGV---- 195
              ++ ++ + P+L  +  ++   C +G++                    T TS +    
Sbjct: 263 FRRLV-DMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLC 321

Query: 196 ------------LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
                       LK +  E    +  TY A++ G CR  ++  A +LL RM + G     
Sbjct: 322 KKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNT 381

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
           +TY  ++    + G + +A   + +        +   + ++ + L    R  EA  +L++
Sbjct: 382 NTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLED 441

Query: 304 MNKRDLK 310
             +  LK
Sbjct: 442 GFQNGLK 448



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 91/237 (38%), Gaps = 36/237 (15%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           ++    ++ ++ EA+ +V  M   G   +  T + I+ V +    +E A  L E M    
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRG 200

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD---------------- 212
           V PD  +Y  ++  YC  GN+      L  M E     D  T+                 
Sbjct: 201 VQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRAL 260

Query: 213 -------------------ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
                               ++ G C+ G +++AF +L  MV  G      T+  ++  L
Sbjct: 261 WYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGL 320

Query: 254 LRLGYYAQAVK-FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + G+  +A + F+ +    + K +   + ++ S     ++ N A  +L  M ++ L
Sbjct: 321 CKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGL 377


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 121/266 (45%), Gaps = 23/266 (8%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           L  ++  V       G  PD+ T   Y+ L++  G  R ++    +L +   + C  +  
Sbjct: 119 LYEEAAAVFEDMKSMGFVPDKVT---YNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIV 175

Query: 72  TFNFITNT-------ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALR 124
           T+N + +        E ++ + + +     +LD        Y  ++    +  K + A+R
Sbjct: 176 TYNSLISAYARDGLLEEAMELKNQMVERGIKLDV-----FTYTAMLSGFVRTGKDESAMR 230

Query: 125 VVDIMAEGGFGLSAITFHPILSVL-TRGKRMEEAWGLMEVMKEIRVS---PDLTAYNYLL 180
           V + M   G   +  TF+ ++ +   RGK  E    +M+V +EI++    PD+  +N LL
Sbjct: 231 VFEEMRTAGCKPNICTFNALIKMHGNRGKFAE----MMKVFEEIKICCCVPDIVTWNTLL 286

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +   G  +  SGV K+M+      +  TY+ L+    R G  ++A  + +RM+D G +
Sbjct: 287 AVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGIT 346

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFV 266
              STY  V+ AL R G + Q+ K +
Sbjct: 347 PDLSTYNAVLAALARGGLWEQSEKIL 372



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 7/173 (4%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KGF P  S  + +I    + + + +   +++ M E GF  S  T++ ++ + ++ +  E 
Sbjct: 448 KGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFER 507

Query: 157 AWGLMEVMKEI---RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +    EV+KEI    + PD+ +YN ++ AYC  G +   S +  +M E  L  D  TY+ 
Sbjct: 508 S---EEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNT 564

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            V         EEA  ++  M+  G     +TY  V+    +L     A+KF+
Sbjct: 565 FVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFI 617



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E  +SV + L   L +   GF P   AY +LI       +  EA+ V   M E G   + 
Sbjct: 11  EGKVSVAASLLNNLHK--DGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTL 68

Query: 139 ITFHPILSVLTR-GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL-TATSGVL 196
           IT++ IL+V  + G    +  GL E MK   + PD   YN L+T  C +G+L    + V 
Sbjct: 69  ITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITC-CRRGSLYEEAAAVF 127

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           + M+      D  TY+ L+    ++ R++EA  +LR M  +G S    TY  ++ A  R 
Sbjct: 128 EDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARD 187

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           G   +A++       R IKLD   + ++ S  +   +   A  + +EM
Sbjct: 188 GLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEM 235



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 118/285 (41%), Gaps = 17/285 (5%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y  L+ A            +  K   + C  T  T+N I N    + +  +   
Sbjct: 30  EPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIT 89

Query: 92  TLARLDKG---FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            L    K     P +  Y+TLI    +    +EA  V + M   GF    +T++ +L V 
Sbjct: 90  GLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVY 149

Query: 149 TRGKRMEEAWGLMEVMKEIRV---SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            + +R++EA   +EV++E+ V   SP +  YN L++AY   G L     +  +M E  + 
Sbjct: 150 GKSRRIKEA---IEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIK 206

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            D  TY A++ G  R G+ E A  +   M   G      T+  ++      G +A+ +K 
Sbjct: 207 LDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKV 266

Query: 266 V----MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
                + C   DI     L    G    G++  +E + + KEM +
Sbjct: 267 FEEIKICCCVPDIVTWNTLLAVFGQN--GMD--SEVSGVFKEMKR 307



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 80/188 (42%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA R    +   GF     T + ++++  R + + +   ++  MKE   +P L  YN L+
Sbjct: 437 EAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLM 496

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +    N   +  VLK++  + +  D  +Y+ ++   CR GR++EA  +   M + G  
Sbjct: 497 YMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLI 556

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
               TY   + +      + +A+  V        K +   + S+      L R ++A   
Sbjct: 557 PDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKF 616

Query: 301 LKEMNKRD 308
           +  +++ D
Sbjct: 617 ISSLHELD 624



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 101/237 (42%), Gaps = 27/237 (11%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR-----DCCF 67
           I +++ V R    +G     P+   Y+ L++A   +  LE    L N+        D   
Sbjct: 155 IKEAIEVLREMEVNGC---SPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFT 211

Query: 68  NTANTFNFITN--TENSLSVLSDLCRTLARLDKGFPRKSAYDTLI------GRLCKLKKI 119
            TA    F+     E+++ V  ++     R     P    ++ LI      G+  ++ K+
Sbjct: 212 YTAMLSGFVRTGKDESAMRVFEEM-----RTAGCKPNICTFNALIKMHGNRGKFAEMMKV 266

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            E +++   + +       +T++ +L+V  +     E  G+ + MK +   P+   YN L
Sbjct: 267 FEEIKICCCVPD------IVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTL 320

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           ++AY   G+      + K+M +  +  D  TY+A++    R G  E++  +L  M D
Sbjct: 321 ISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQD 377



 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 70/156 (44%), Gaps = 6/156 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT--ENSL-SVLSD 88
           +P    ++ L+   G+      +  +  +    CC     T+N +     +N + S +S 
Sbjct: 241 KPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSG 300

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           + + + R+  GF P +  Y+TLI    +    D+A+ +   M + G      T++ +L+ 
Sbjct: 301 VFKEMKRV--GFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAA 358

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           L RG   E++  ++  M++    P+   +  LL AY
Sbjct: 359 LARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAY 394


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +S DL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L AD  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +
Sbjct: 233 LDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDL 292

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL
Sbjct: 293 KQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTAL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 86/190 (45%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + +     S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TLI  LCK   + +A  ++D M+  G     IT+  ++    +   +E A+   + M
Sbjct: 278 TYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRM 337

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  +  D  AY  L++  C +G       +L++M    L  +  TY  ++   C+ G V
Sbjct: 338 IKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397

Query: 225 EEAFVLLRRMVDDG 238
                LL+ M  DG
Sbjct: 398 WTGSKLLKEMQRDG 411



 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDNG 236



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 49/102 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI   CK   ++ A      M +    L  + +  ++S L +  R  +A  +
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
           +  M  + + P++  Y  ++  +C KG++   S +LK+M+ +
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 108/221 (48%), Gaps = 2/221 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK++ I EA  +V  M + G   S  TF+ ++    R  ++E+ + +
Sbjct: 403 PDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTV 462

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  +  ++ ++  ++ A+C  G +     +L  M  + +  +A+ Y++++     
Sbjct: 463 LSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIE 522

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +G  E+AF+L+ +M   G S    TY  ++  L +     +A + +     + ++ D   
Sbjct: 523 SGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVS 582

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
           + ++ S        + A  +L+EM+K D++    LR Y+ +
Sbjct: 583 YNTIISACCNKGDTDRALELLQEMHKYDIRP--TLRTYHPL 621



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 124/280 (44%), Gaps = 2/280 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT+A Y+ L+N     RDL+    +  +           T+N + N    + ++++    
Sbjct: 368 PTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDL 427

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +  ++K    P    ++TLI    +  ++++   V+  M + G   + I+F  ++    +
Sbjct: 428 VMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCK 487

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++ EA  +++ M    V P+   YN ++ AY   G       +++KM+   + A   T
Sbjct: 488 NGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFT 547

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ L+ G C+  +++EA  L+  + + G      +Y  ++ A    G   +A++ +    
Sbjct: 548 YNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMH 607

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             DI+     +  L S L    R ++   + + M  ++++
Sbjct: 608 KYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVE 647



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 87/176 (49%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  LCK  K+ +A +V++++   G   +   ++ +++   + + ++ A+ + E MK   
Sbjct: 341 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRH 400

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD   YN L+   C    +T    ++ +ME+  +     T++ L+    RAG++E+ F
Sbjct: 401 IRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCF 460

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +L  M D G      ++  V+ A  + G   +AV  +     +D+  + +++ S+
Sbjct: 461 TVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSI 516



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 91/210 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ +I  L +  K  +AL+V D M + G   + IT++ ++    +G  +E  + L
Sbjct: 193 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRL 252

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +    P++  YN LL+  C  G +  T  ++ +M    +  D  TY  L  G  R
Sbjct: 253 RDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTR 312

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G       L    +  G  +   T + ++  L + G  A+A + + +     +   T +
Sbjct: 313 TGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAI 372

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L +    +     A  I ++M  R ++
Sbjct: 373 YNTLINGYCQVRDLQGAFSIFEQMKSRHIR 402



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 113/289 (39%), Gaps = 22/289 (7%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ +++      DLE    L ++  +D       T+N +         LS LCR 
Sbjct: 228 PNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVL---------LSGLCRA 278

Query: 93  LARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
             R+D+              P    Y  L   L +       L +     + G  + A T
Sbjct: 279 -GRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYT 337

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
              +L+ L +  ++ +A  ++E++    + P    YN L+  YC   +L     + ++M+
Sbjct: 338 CSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMK 397

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              +  D  TY+AL+ G C+   + EA  L+  M   G      T+  ++ A  R G   
Sbjct: 398 SRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLE 457

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +    +     + IK +   FGS+        +  EA  IL +M  +D+
Sbjct: 458 KCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDV 506



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 2/159 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIM--AEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           P   A++  +        +DEAL ++  M  +EG     A +++ +++ L R  +  +A 
Sbjct: 156 PDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 215

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            + + M +  V+P+   YN ++  +   G+L A   +  +M ++    +  TY+ L+ G 
Sbjct: 216 KVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGL 275

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           CRAGR++E   L+  M          TY+ +   L R G
Sbjct: 276 CRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTG 314



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 15/173 (8%)

Query: 19  VTRSFTKSGAFPDE-------------PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC 65
           V ++F K+G  P+              P +  Y+ +++A       E    L+ K     
Sbjct: 481 VVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSG 540

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEAL 123
              +  T+N +       S + +    +  L ++G  P   +Y+T+I   C     D AL
Sbjct: 541 VSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRAL 600

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
            ++  M +     +  T+HP+LS L    R+ +   L + M    V P  + Y
Sbjct: 601 ELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIY 653


>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Cucumis sativus]
          Length = 460

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 120/286 (41%), Gaps = 44/286 (15%)

Query: 66  CFNTANTFNFITNTE---NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122
           CF T  +FN + NT    +  S  S++ +    +D   P   +Y+ +I    K    ++A
Sbjct: 147 CFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMDFR-PNSVSYNIMIKGWIKKGGWEQA 205

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
             + D M E G   S +T++  L VL R   M+ A  L + M E    P+   Y  L+  
Sbjct: 206 CNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEG 265

Query: 183 YCF-----------------------------------KGNLTATSGVLKKMEEEKLGAD 207
           +CF                                    GN+     +L +M++ +L  D
Sbjct: 266 WCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPD 325

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV- 266
             TY+ LV   C+ G+V +A+ +L +M   G     +TY  ++      G +  A+K + 
Sbjct: 326 VVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILN 385

Query: 267 -MVCGGRDIKLDTELFGSLGSKLIGLERFNE-ANFILKEMNKRDLK 310
            M+  G    L T  F SL   L+  E  ++   F+L+EM KR L+
Sbjct: 386 AMLMSGHYPHLKT--FASLVVGLLKGENNDDYVCFVLEEMEKRQLR 429


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 104/214 (48%), Gaps = 2/214 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++KG  P    Y T+I    K+  ++ A  ++++MA+ G G     ++ ++    + +R+
Sbjct: 345 IEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERV 404

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDA 213
           ++A+G+ + M    + P+   +N L+      G       + K+M E+E++     +Y  
Sbjct: 405 DQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTI 464

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+ G  +AGRV EAF+  + M+D G      TY  ++ +L + G   +A K V       
Sbjct: 465 LIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLG 524

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +  D + + +L + LI     + A  + +EM KR
Sbjct: 525 VNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKR 558



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 2/247 (0%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL-DKG-FPRKSAYDTLIGRLCKLKKIDEAL 123
           C  T  T+  + +      +L D C+   ++  KG  P    Y TLI    K  K+DEA 
Sbjct: 174 CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEAR 233

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           +++D+M   G   +A+T+  I+    +   + EA  ++  M+E    P L  +  LL+ Y
Sbjct: 234 KLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 293

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
             KG       VL +M       D   Y +L+      GRV EA  +   M++ G +   
Sbjct: 294 LSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 353

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++    ++G    A + + +     +  D   + SL    + LER ++A  +   
Sbjct: 354 LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDR 413

Query: 304 MNKRDLK 310
           M    +K
Sbjct: 414 MVASGIK 420



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 10/233 (4%)

Query: 84  SVLSDLCRTLARLDKGF-----PRKS----AYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
           SV+   C+    LD G+     P+ S    +Y T+I  L   K+IDEA  + + +   G 
Sbjct: 81  SVIHGYCKA-GDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAGC 139

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
             + + +  ++  L +  R+E+     E M      P  T Y  ++   C    L     
Sbjct: 140 SPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACK 199

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           V ++M ++    D  TY  L+ G  +A +++EA  LL  M+  G      TY  ++    
Sbjct: 200 VFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFC 259

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +L    +A + +     R  +    +F SL S  +   R  EA  +L EM  R
Sbjct: 260 KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTAR 312



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 5/248 (2%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           ++P +  V     + G  PD  T   Y  L++       ++  R LL+         TA 
Sbjct: 193 MLPDACKVFEQMVQKGCVPDTIT---YTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAV 249

Query: 72  TFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+  I +    L ++++    +A++ ++G  P    + +L+       + +EA +V+  M
Sbjct: 250 TYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEM 309

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G     I +  ++ +L    R+ EA  + + M E   +PD   Y  ++  +   GN+
Sbjct: 310 TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNV 369

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            A   +L+ M +  +G D   Y++L+ G  +  RV++AF +  RMV  G      T+  +
Sbjct: 370 EAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVL 429

Query: 250 MGALLRLG 257
           M  L + G
Sbjct: 430 MHGLFKDG 437



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 9/219 (4%)

Query: 106 YDTLIGRLCKLKKIDEA-LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           Y ++I   CK   +D    R V   A     L  I++  ++  L   KR++EA  L E +
Sbjct: 79  YTSVIHGYCKAGDLDTGYFRAVTPKAS----LDVISYTTVIKGLADSKRIDEACELFEEL 134

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K    SP++ AY  ++      G +       ++M          TY  ++ G C+A  +
Sbjct: 135 KTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQML 194

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A  +  +MV  G      TY  ++    +     +A K + V   +  +     +GS+
Sbjct: 195 PDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSI 254

Query: 285 GSKLIGLERFNEANFILKEMNKRDLKMGF----KLRDYY 319
                 L+  NEA  ++ +M +R  + G      L  YY
Sbjct: 255 VHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 293



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T+I  L  + K+DEA +  + M + G     I F  ++    +  + +    L
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 161 M-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + +K  R  PD+  Y  ++  YC  G+L   +G  + +   K   D  +Y  ++ G  
Sbjct: 65  LNQALKRFR--PDVFLYTSVIHGYCKAGDL--DTGYFRAV-TPKASLDVISYTTVIKGLA 119

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            + R++EA  L   +   G S     Y  V+  LL+ G     +K
Sbjct: 120 DSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLK 164



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 83/207 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  +I  L K  +I++ L+  + M+      +  T+  ++  L + + + +A  +
Sbjct: 141 PNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKV 200

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +    PD   Y  L+  +     +     +L  M  +     A TY ++V G C+
Sbjct: 201 FEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCK 260

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              + EA  ++ +M + G       +  ++   L  G   +A + +     R    D  L
Sbjct: 261 LDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVIL 320

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL   L    R  EA  +   M ++
Sbjct: 321 YTSLIDLLFSTGRVPEARHVFDSMIEK 347



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 55/123 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  LI  L K  ++ EA      M + G      T+  ++  L +  R+ EA  L
Sbjct: 457 PTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKL 516

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M ++ V+PD+ AY+ L+T       +     V ++M +     +  TY  L  G   
Sbjct: 517 VEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRA 576

Query: 221 AGR 223
           AGR
Sbjct: 577 AGR 579


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  L     +++A  +++ M   GF  S++T   +L   ++ +R++    +
Sbjct: 622 PNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDI 681

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M    +  D+T YN LL   C+ G     + VL++M    +  D  T++AL+LG C+
Sbjct: 682 HEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCK 741

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +  ++ AF    +M+    S   +T+  ++G L  +G   +A
Sbjct: 742 SSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEA 783



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 120/291 (41%), Gaps = 3/291 (1%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R   K GA P+  T     D +  AG  ++L ++   +  R       T          +
Sbjct: 298 REMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQ 357

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
                + D  R  A  D   P    Y  LI  LCK   +DEA +V+  M E     + +T
Sbjct: 358 GKTDEVKDTLR-FALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVT 416

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC-FKGNLTATSGVLKKM 199
           F  +++   +   +++A     +MKE  ++P++  Y  L+  +  F+G   A   V   M
Sbjct: 417 FSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALE-VYHDM 475

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             E +  +    D+LV G  + G++EEA  L +     G S+ +  Y  ++  L + G  
Sbjct: 476 LCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDM 535

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             A KF      R++  D  ++    + L  L +F EA   L EM    LK
Sbjct: 536 PTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLK 586



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 1/213 (0%)

Query: 98  KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +G P     Y+TL+   C+  ++D A  V+D+M E G   +  T+ P +    R K +EE
Sbjct: 198 QGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEE 257

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+ L E M    V  D+   + L+   C  G  +    + ++M++     +  TY  L+ 
Sbjct: 258 AFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLID 317

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
              +AGR +E   LL  MV  G  +   TY  +M  L + G   +    +      ++  
Sbjct: 318 SLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSP 377

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +   +  L   L      +EA  +L EM ++ +
Sbjct: 378 NGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSI 410



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%)

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           AL V D M   G  +  + ++ +++   R  +++ A G++++MKE  V P++  Y   + 
Sbjct: 188 ALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIV 247

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            YC    +     + + M    +  D  T  ALV G CR GR  EA+ L R M   G + 
Sbjct: 248 YYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAP 307

Query: 242 LYSTYAHVMGALLRLG 257
            + TY  ++ +L + G
Sbjct: 308 NHVTYCTLIDSLAKAG 323



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 67/159 (42%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+TL+  LC      +A  V++ M   G     ITF+ ++    +   ++ A+     
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    +SP++  +N LL      G +     VL +ME+  L  +  TYD L  G  +   
Sbjct: 755 MLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSN 814

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             EA  L   MV  G     STY  ++    + G   QA
Sbjct: 815 KVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQA 853



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI  L K   +  A +    + +      A+ ++  ++ L    + +EA   +  M+
Sbjct: 522 YTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMR 581

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            + + PD + YN ++ ++C KG       +L +M+   +  +  TY+ LV G    G VE
Sbjct: 582 NMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVE 641

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           +A  LL  MV  G S    T+  V+ A
Sbjct: 642 KAKYLLNEMVSAGFSPSSLTHRRVLQA 668



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 55/128 (42%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           D+L+  L +  KI+EA+ +    +  G  L  + +  ++  L +   M  A+   + + +
Sbjct: 488 DSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + PD   YN  +   C  G        L +M    L  D  TY+ +++  CR G   +
Sbjct: 548 RNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAK 607

Query: 227 AFVLLRRM 234
           A  LL  M
Sbjct: 608 ALKLLHEM 615



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 3/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y   I   C+ K ++EA  + + M   G  L  +T   +++ L R  R  EA+ L
Sbjct: 237 PNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYAL 296

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M ++  +P+   Y  L+ +    G       +L +M    +  D  TY AL+    +
Sbjct: 297 FREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGK 356

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+ +E    LR  + D  S    TY  ++ AL +     +A + ++    + I  +   
Sbjct: 357 QGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVT 416

Query: 281 FGSLGSKLIG---LERFNEANFILKE 303
           F S+ +  +    L++  E   ++KE
Sbjct: 417 FSSVINGFVKRGLLDKATEYKRMMKE 442



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 4/213 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  L K  +  E L ++  M   G  +  +T+  ++  L +  + +E    
Sbjct: 307 PNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDT 366

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +       +SP+   Y  L+ A C   N+     VL +MEE+ +  +  T+ +++ G  +
Sbjct: 367 LRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVK 426

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
            G +++A    R M + G +    TY  ++    +      A++    M+C G  +K++ 
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEG--VKVNK 484

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            +  SL + L    +  EA  + K+ +   L +
Sbjct: 485 FIVDSLVNGLRQNGKIEEAMALFKDASGSGLSL 517



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + ++TL+G L  + +I EA  V+  M + G   + +T+  + +   +     EA  L
Sbjct: 762 PNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRL 821

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      P ++ YN L++ +   G +T    + K M++  +   + TYD LV G  R
Sbjct: 822 YCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSR 881

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
                E    L+ M + G S    T + +  A  + G   QA + +
Sbjct: 882 IRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLL 927



 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 83/213 (38%), Gaps = 1/213 (0%)

Query: 96  LDKGFPRKSAYDTLIGRLC-KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +  GF   S     + + C + +++D  L + + M   G       ++ +L VL      
Sbjct: 651 VSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMT 710

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  ++E M    ++PD   +N L+  +C   +L        +M  + +  +  T++ L
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTL 770

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    GR+ EA  +L  M   G      TY  +     +     +A++      G+  
Sbjct: 771 LGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGF 830

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                 + +L S         +A  + K+M KR
Sbjct: 831 VPKVSTYNALISDFTKAGMMTQAKELFKDMQKR 863



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 10/217 (4%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           +A L    P   AY+ L   L  L     A  V+  M + G     +T + +L+ L R  
Sbjct: 93  IALLRSSRPTTVAYNIL---LAALSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNG 149

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYL-LTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
           +++ A  L +    I  +P +++   L L      G+  A   V  +M  + L  D   Y
Sbjct: 150 QVDAAAALADRAGGI--TPWMSSAGTLSLLDIAGFGDTPAALSVADRMTAQGLPMDVVGY 207

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVC 269
           + LV G CRAG+V+ A  +L  M + G     +TY   +    R     +A      MV 
Sbjct: 208 NTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVR 267

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            G  + LD     +L + L    RF+EA  + +EM+K
Sbjct: 268 NG--VLLDVVTLSALVAGLCRDGRFSEAYALFREMDK 302



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 70/185 (37%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+  I  LC L K  EA   +  M   G      T++ ++    R     +A  
Sbjct: 551 LPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALK 610

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  MK   + P+L  YN L+      G +     +L +M        + T+  ++    
Sbjct: 611 LLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACS 670

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           ++ R++    +   M++ G     + Y  ++  L   G   +A   +    G  I  DT 
Sbjct: 671 QSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTI 730

Query: 280 LFGSL 284
            F +L
Sbjct: 731 TFNAL 735



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 2/165 (1%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN +     S+  + +    L  ++K    P    YD L     K     EA+R+   M
Sbjct: 766 TFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEM 825

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF     T++ ++S  T+   M +A  L + M++  V P    Y+ L++ +    N 
Sbjct: 826 VGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNG 885

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           T     LK M+E+       T   +     + G   +A  LL+ +
Sbjct: 886 TEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 59/146 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI   CK   +D A      M       +  TF+ +L  L    R+ EA  +
Sbjct: 727 PDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTV 786

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  + P+   Y+ L T +  + N      +  +M  +       TY+AL+    +
Sbjct: 787 LIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTK 846

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
           AG + +A  L + M   G      TY
Sbjct: 847 AGMMTQAKELFKDMQKRGVHPTSCTY 872


>gi|414865543|tpg|DAA44100.1| TPA: hypothetical protein ZEAMMB73_135273 [Zea mays]
          Length = 542

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 128/309 (41%), Gaps = 21/309 (6%)

Query: 5   RKLPTKFLIPQSVLVTRS---FTKSGAFPDEPTSAYYDDLVNAAGHE-RDLETVRYLLNK 60
           RKL +      S+  +RS   F  +GA P   T   Y+ L++A     R  E +R   + 
Sbjct: 15  RKLTSFLSAVASLADSRSRSPFPPAGAVPATLTPTAYNALMSAYSRAGRHDEVLRLFFSL 74

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
                   TA  F  + ++  +    S      + L  G  P  SA+  L      LK I
Sbjct: 75  PFAP----TAPLFTTLISSLAASGSKSAALDAFSLLASGIGPTTSAFTAL------LKSI 124

Query: 120 DEALR------VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           D A            MA       A T++ ++ +L   +R++EAWG+++ M E+ V P +
Sbjct: 125 DAASSESVYRAFFATMAAMECAPDAATYNCLIWILCDSQRLDEAWGVLDSMLEVGVCPTV 184

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
            +Y  +L  YC +G +     +L  M +     D  +Y  L+ G CR G   +   +L  
Sbjct: 185 RSYTAILHGYCKQGRVLEAERLLDTMIQVGCAPDVISYSVLIQGLCRVGEFGKVERILGE 244

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
               G +    TY   M AL R+G+  +A + V V   R + +  E    L   L     
Sbjct: 245 SEAKGWTPNAVTYNIYMSALCRMGFLDEAFRQVDVMHSRGVYMTIETVNILFDCLCRGSM 304

Query: 294 FNEANFILK 302
           F+EA  +L+
Sbjct: 305 FSEALTLLE 313



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 89/188 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ LI  LC  +++DEA  V+D M E G   +  ++  IL    +  R+ EA  L
Sbjct: 147 PDAATYNCLIWILCDSQRLDEAWGVLDSMLEVGVCPTVRSYTAILHGYCKQGRVLEAERL 206

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M ++  +PD+ +Y+ L+   C  G       +L + E +    +A TY+  +   CR
Sbjct: 207 LDTMIQVGCAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCR 266

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G ++EAF  +  M   G  +   T   +   L R   +++A+  +      +  +D   
Sbjct: 267 MGFLDEAFRQVDVMHSRGVYMTIETVNILFDCLCRGSMFSEALTLLECSEELNWDVDVFC 326

Query: 281 FGSLGSKL 288
           + ++ S+L
Sbjct: 327 YNTMMSRL 334



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 1/152 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KG+ P    Y+  +  LC++  +DEA R VD+M   G  ++  T + +   L RG    E
Sbjct: 248 KGWTPNAVTYNIYMSALCRMGFLDEAFRQVDVMHSRGVYMTIETVNILFDCLCRGSMFSE 307

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L+E  +E+    D+  YN +++  C  G++     +L  + ++ +G D  ++   + 
Sbjct: 308 ALTLLECSEELNWDVDVFCYNTMMSRLCDTGDIARVLKLLVDLVKKGIGPDMFSFTIAIR 367

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
             CRAG+ + A  LL     +   V ++T  H
Sbjct: 368 SLCRAGKFKVAKCLLDNKGIEYDVVAFNTLIH 399


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 96/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++  L K   IDEA ++   M   G      T+  ++  L R KR EEA  L
Sbjct: 82  PDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLL 141

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M+E   +P   AY  ++  YC  G + +   VLKKM ++ L  D  T ++L+    R
Sbjct: 142 FDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSR 201

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR E A  +  RM   G +V   ++  ++    + G    A +F+     R IK ++  
Sbjct: 202 TGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSIT 261

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           F +L + L   +  +EA  +L+EM
Sbjct: 262 FNTLINCLGRAKYASEAYKVLQEM 285



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 65/123 (52%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +++ ++    K  K+  A + +D M   G   ++ITF+ +++ L R K   EA+ +++ M
Sbjct: 226 SFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEM 285

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +   ++PD+  Y  ++ A+   GN+     +   ME+    A+  TY+ L+    +AGR 
Sbjct: 286 RSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRY 345

Query: 225 EEA 227
           ++A
Sbjct: 346 QDA 348



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 90/209 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  +I   CK  +I+ A+ V+  M +        T + +++ ++R  R E A  +
Sbjct: 152 PSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEI 211

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK+  V+ +  ++N +L      G +      + +ME   +  ++ T++ L+    R
Sbjct: 212 FERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGR 271

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A    EA+ +L+ M   G +    TY  ++ A  + G   +A +            +   
Sbjct: 272 AKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVT 331

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   L+   R+ +A  I  +M K+ +
Sbjct: 332 YNLLIDALVKAGRYQDARDIYFDMKKKGI 360


>gi|125539402|gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indica Group]
          Length = 506

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P +  Y+ LIG  C+L ++++A  +   M +     +A  +  +++   +   +E 
Sbjct: 260 DRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLINGHCKKGEVEA 319

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A G+ E M    V PD  +Y  L+   C  GN+     ++++M ++   AD  TY+ L+ 
Sbjct: 320 ARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLE 379

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           G C+  R+ EA  LL ++  +G  +  ++Y  VM  L   G   +A   + +  GR
Sbjct: 380 GLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKAAGLLGMMLGR 435



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 4/215 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEEA 157
           P    Y+ LI    K   +  A +V D M          S +T+  ++  L RG +M+EA
Sbjct: 190 PNTCIYNILIKYYVKKGDLGTAFQVFDEMRNMNCADVRPSLVTYSTLIGGLCRGAQMKEA 249

Query: 158 WGLMEVMKEI-RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           + L E M E  R+ PD   YN L+  +C  G +     +   M + +   +A  Y  L+ 
Sbjct: 250 FELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLIN 309

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+ G VE A  +   M+  G      +Y  ++G L R G   + +  V     +  K 
Sbjct: 310 GHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKA 369

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           D   +  L   L    R  EA  +L+++    +++
Sbjct: 370 DVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQL 404



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK  +++ A  V + M   G    A+++  ++  L R   ++E   L
Sbjct: 299 PNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINL 358

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +     D+  YN LL   C    +     +L+K+  E +  +  +Y  ++   C 
Sbjct: 359 VQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCS 418

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G +E+A  LL  M+  G    Y+    ++  L  +G  + A
Sbjct: 419 CGEMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDA 460



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 94/214 (43%), Gaps = 12/214 (5%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLS 84
           EP +  Y  L+N    + ++E  R +  +  R      A ++  +        N +  ++
Sbjct: 298 EPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGIN 357

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           ++ ++ +   + D        Y+ L+  LCK ++I EA+ +++ +   G  L+  ++  +
Sbjct: 358 LVQEMWQKGCKADV-----VTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIV 412

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++ L     ME+A GL+ +M      P   A N LL   C  G ++  +  L  + +   
Sbjct: 413 MNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYGLVDTGF 472

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             +AR +  L+    R  ++  +  LL  ++ +G
Sbjct: 473 MPEARCWARLIESVFRERKLRRSIELLDVLIAEG 506


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 2/221 (0%)

Query: 91  RTLARLDK-GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           R +  L+K G P   AY+ +I   CK  +I+ A  V+D M   GF    +T + ++    
Sbjct: 31  RVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFC 90

Query: 150 RGKRMEEAWGLME-VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
              +++ A  + E ++K+    P L  Y  L+ AY  +G +     +L +M    L  D 
Sbjct: 91  GKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDT 150

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+ +  G C+ G+V+ AF  +R +   G      TY  ++ ALL  G + +  K++  
Sbjct: 151 FTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSE 210

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              R  + +   +  L S L    +  E+  ++K M ++ L
Sbjct: 211 IFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGL 251



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +   LCK  K+D A   V  +   G     IT++ +L  L    + +E    
Sbjct: 148 PDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKW 207

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  +      P++  Y+ L+++ C  G +  +  ++K M+E+ L  DA  YD L+   CR
Sbjct: 208 MSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCR 267

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G+++ A   L  M+ DG       Y  +M AL + G    AV+ 
Sbjct: 268 EGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEI 312



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 1/140 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG  P    YD LI   C+  K+D A+  +D M   GF    + ++ I++ L +    +
Sbjct: 248 EKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGD 307

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  +   + E+   P++++YN +L+A    G+     G++ +M  + +  D  TY++L+
Sbjct: 308 HAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLI 367

Query: 216 LGACRAGRVEEAFVLLRRMV 235
              CR G V+EA  LL  M+
Sbjct: 368 SCLCRDGMVDEAIGLLADML 387



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 74/163 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC+  KI+E++ +V +M E G    A  + P+++   R  +++ A   
Sbjct: 218 PNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEF 277

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M      PD+  YN ++ A C  GN      +  K++E     +  +Y+ ++     
Sbjct: 278 LDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWS 337

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           +G    A  ++ +M+  G      TY  ++  L R G   +A+
Sbjct: 338 SGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAI 380



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  L    K DE  + +  +   G   + +T+  ++S L R  ++EE+  L
Sbjct: 183 PDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNL 242

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++VMKE  ++PD   Y+ L+ A+C +G L      L  M  +    D   Y+ ++   C+
Sbjct: 243 VKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCK 302

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  + A  +  ++ + G     S+Y  ++ AL   G   +A+  +     + I  D   
Sbjct: 303 NGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVIT 362

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL S L      +EA  +L +M
Sbjct: 363 YNSLISCLCRDGMVDEAIGLLADM 386


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 84/162 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + +L+  LC + K ++   +   M   G   + + F+ IL  L +  R+ E   L
Sbjct: 446 PDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRL 505

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ ++ + V PD+ +YN L+  +C  G +   S +L+ M    L  D+ +Y+ L+ G C+
Sbjct: 506 VDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCK 565

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AGR++ A+   R+M+ +G +    TY  ++  L +   +++A
Sbjct: 566 AGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEA 607



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 124/275 (45%), Gaps = 23/275 (8%)

Query: 52  ETVRYLLNKRARDCCFNTA----------NTFNFITNTENSLSVLSDLCRTLARLDKGFP 101
           ETV  L N+  RDC    A            F  + + E+  +    + +T  R+D    
Sbjct: 73  ETVVSLFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDH--- 129

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
                + L+  LC  K++ EA+ V+   M E G     ++++ +L  L   KR EEA  L
Sbjct: 130 --IVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALEL 187

Query: 161 MEVMKEIRV---SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           + +M + +V    P++ +Y+ ++  +  +G +     +  +M +  +  D  TY  ++ G
Sbjct: 188 LHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDG 247

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIK 275
            C+A   + A  + ++M+D+G      TY  ++   L +G + + V+ +  M  GG   K
Sbjct: 248 LCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGP--K 305

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +   +GSL + L    R  EA F    M  + +K
Sbjct: 306 PNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIK 340



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 2/170 (1%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDI 128
           +T+N + +   S+    ++ R L  +  G P+ +   Y +L+  LCK  +  EA    D 
Sbjct: 274 DTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDS 333

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   S  T+  +L        + E   L+ +M    +SP+   +N   +AY   G 
Sbjct: 334 MIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGI 393

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +     +  KM ++ L  DA +Y AL+   C+ GRV++A V   +M+++G
Sbjct: 394 IDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEG 443



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 81/181 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++T++  LCK  ++ E  R+VD +   G     I+++ ++        ++EA  L
Sbjct: 481 PNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKL 540

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M  + + PD  +YN LL  YC  G + +     +KM    +     TY+ ++ G  +
Sbjct: 541 LEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQ 600

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R  EA  L   M++ G      TY  ++  L +     +A+K       + ++L+   
Sbjct: 601 TKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIIT 660

Query: 281 F 281
           F
Sbjct: 661 F 661



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%)

Query: 106  YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
            Y+ ++  LCK   +DEA ++   +   G  L+ ITF+ ++  L +G R E+A  L   + 
Sbjct: 864  YNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIP 923

Query: 166  EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               + PD+  Y  +      +G+L    G+   ME+     D+R  +ALV    + G + 
Sbjct: 924  ANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDIS 983

Query: 226  EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             A   L ++ +   S+  ST + ++    R  Y   A
Sbjct: 984  RAGAYLSKLDEKNFSLEASTTSELISLFSRGEYQHHA 1020



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 123/315 (39%), Gaps = 46/315 (14%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARD---CCFNTANTFNFITN---TENSLSVL 86
           P +  Y+ L+    +E+  E    LL+  A D    C     +++ + N   TE  +   
Sbjct: 163 PDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKP 222

Query: 87  SDLCRTLARLDKGFPRKSA-YDTLIGRLCKLKKID------------------------- 120
            +L   L  +D+G P     Y T+I  LCK +  D                         
Sbjct: 223 YNL--FLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLI 280

Query: 121 ----------EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
                     E +R+++ M+ GG   +  T+  +L+ L +  R  EA    + M    + 
Sbjct: 281 HGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIK 340

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P +T Y  +L  Y  KG L+    +L  M    +  +   ++       + G +++A  +
Sbjct: 341 PSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDI 400

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA-VKFVMVCGGRDIKLDTELFGSLGSKLI 289
             +M   G S    +Y  ++ AL +LG    A VKF  +     +  D  +F SL   L 
Sbjct: 401 FNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI-NEGVTPDIVVFSSLVYGLC 459

Query: 290 GLERFNEANFILKEM 304
            ++++ +   +  EM
Sbjct: 460 TVDKWEKVEELFFEM 474



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 65/140 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++  LCK   +DEA+++   +   G  L+ ITF+ ++  L +G R E+A  L   + 
Sbjct: 626 YNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIP 685

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +  ++  Y  ++     +G+L     +   ME+     +++  +ALV      G + 
Sbjct: 686 ANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDIS 745

Query: 226 EAFVLLRRMVDDGQSVLYST 245
            A   L ++ +   SV  ST
Sbjct: 746 RAGAYLSKLDERNFSVEAST 765



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 85/211 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+   CK  +ID A      M   G     +T++ IL  L + KR  EA  L
Sbjct: 551 PDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKEL 610

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M       D+  YN +L   C    +     + + +  + L  +  T++ ++    +
Sbjct: 611 YLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLK 670

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR E+A  L   +  +G      TY  V+  L+  G   +               ++++
Sbjct: 671 GGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQM 730

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
             +L  +L+     + A   L ++++R+  +
Sbjct: 731 LNALVRRLLHRGDISRAGAYLSKLDERNFSV 761



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 57/112 (50%)

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           +++ + +R+++A+ L   M    ++PD+  YN +L      G  +    +   M   +  
Sbjct: 799 ALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQ 858

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            +  TY+ ++ G C++  V+EAF + + +   G  +   T+  ++GALL+ G
Sbjct: 859 MNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGG 910



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/138 (20%), Positives = 57/138 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  ++        + E   ++++M   G   +   F+   S   +   +++A  +
Sbjct: 341 PSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDI 400

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M++  +SPD  +Y  L+ A C  G +        +M  E +  D   + +LV G C 
Sbjct: 401 FNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCT 460

Query: 221 AGRVEEAFVLLRRMVDDG 238
             + E+   L   M++ G
Sbjct: 461 VDKWEKVEELFFEMLNVG 478



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 10/214 (4%)

Query: 115  KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
            K ++ID+A  +   M   G     +T++ IL  L +  R  EA  L   M   R   ++ 
Sbjct: 803  KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIY 862

Query: 175  AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             YN +L   C    +     + + +  + L  +  T++ ++    + GR E+A  L   +
Sbjct: 863  TYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAI 922

Query: 235  VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG---- 290
              +G      TY  V   L+  G   +     +        LD+ L  +L  +L+     
Sbjct: 923  PANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDI 982

Query: 291  ------LERFNEANFILKEMNKRDLKMGFKLRDY 318
                  L + +E NF L+     +L   F   +Y
Sbjct: 983  SRAGAYLSKLDEKNFSLEASTTSELISLFSRGEY 1016


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 1/216 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+GF P    +  LI  LCK  K+ EA +++++M   G     +T++ +++ L    ++
Sbjct: 243 VDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQL 302

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A  L E + +  +  ++ +YN L+  YC    +     + ++M  + L     TY+ L
Sbjct: 303 EDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTL 362

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   C++GRV  A  L   M   GQ +  STY  ++  L + G+  +A+         + 
Sbjct: 363 IGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEH 422

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           K + E+F  L   +    +  EA     E++K  L+
Sbjct: 423 KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLE 458



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 134/308 (43%), Gaps = 13/308 (4%)

Query: 4   LRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR 63
           L K  T FL   +++V R F+     PD  T     D +   G   + + +  L++ + +
Sbjct: 231 LWKEVTWFL---NLMVDRGFS-----PDAFTFTILIDGLCKEGKVGEAQQILELMHHKGK 282

Query: 64  DCCFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGFPRKS-AYDTLIGRLCKLKKIDE 121
           +       T+N + N    +  L D  +    L D+G      +Y+ LI   CK +KIDE
Sbjct: 283 E---PDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDE 339

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A R+ + M   G   S +T++ ++  L +  R+  A  L   M+       L+ Y  LL 
Sbjct: 340 AFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLD 399

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
             C  G+L     + + +++ +   +   +  L+ G CRAG++EEA+     +  +G   
Sbjct: 400 GLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEP 459

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
               Y  ++  L   G  ++AVK +     +    D+  F  +   L+     +EA  +L
Sbjct: 460 DTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLL 519

Query: 302 KEMNKRDL 309
           +EM  R+ 
Sbjct: 520 EEMRNRNF 527



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 2/175 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y++LI  L +     E    +++M + GF   A TF  ++  L +  ++ EA  ++E+M 
Sbjct: 219 YNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMH 278

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                PD+  YN L+   C  G L   + + + + +  +  +  +Y+ L+ G C+  +++
Sbjct: 279 HKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKID 338

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FV-MVCGGRDIKLDT 278
           EAF L   M   G      TY  ++GAL + G    A K FV M   G+ +KL T
Sbjct: 339 EAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLST 393



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 110/289 (38%), Gaps = 19/289 (6%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP +     LV     E  +     L ++      F  A T+  + N          LC+
Sbjct: 74  EPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILIN---------GLCK 124

Query: 92  T--------LARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
                    L    KG  +     Y  +I  LCK     EAL +   M   G     + +
Sbjct: 125 ARKTGLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVY 184

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++  L R  R++EA    + M+   +S D+  YN L+      G     +  L  M +
Sbjct: 185 SSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 244

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
                DA T+  L+ G C+ G+V EA  +L  M   G+     TY  +M  L  +G    
Sbjct: 245 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLED 304

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           A K       R IKL+   +  L +     ++ +EA  + +EM  + LK
Sbjct: 305 ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLK 353



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 2/216 (0%)

Query: 97  DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG F     Y  LI  LCK +K   A+++ + M +G       T+  I+  L +     
Sbjct: 105 EKGLFGDAKTYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTT 163

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  +   M    + PD+  Y+ L+   C  G L       K+ME   + AD  TY++L+
Sbjct: 164 EALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLI 223

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G  RAG  +E    L  MVD G S    T+  ++  L + G   +A + + +   +  +
Sbjct: 224 HGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKE 283

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            D   + +L + L  + +  +A  + + +  R +K+
Sbjct: 284 PDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKL 319



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 79/177 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLIG LC+  ++  A ++   M   G  L   T+  +L  L +   +EEA  L
Sbjct: 354 PSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDL 413

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +K+    P++  ++ LL   C  G L        ++ +  L  D   Y+ L+ G C 
Sbjct: 414 FQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCN 473

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            G + EA  LL +M + G      T+  ++  LL+     +A++ +     R+   D
Sbjct: 474 KGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPD 530



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ LI  LC    + EA++++  M E G    +ITF+ I+  L +   + EA  L
Sbjct: 459 PDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQL 518

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCF 185
           +E M+    SPD    + LL    F
Sbjct: 519 LEEMRNRNFSPDEAVTSMLLCLASF 543


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 3/232 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFITNTENSLSVLSDLCR 91
           PT   Y  L+     E   E   Y L ++ RD     + N FN +     +  +  D   
Sbjct: 315 PTDVTYTVLIRGCTEEGMPEKA-YELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVS 373

Query: 92  TLARL-DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
               + D G P    Y+ LI  LC+ +KI EAL + + M E G     +T+H +L     
Sbjct: 374 LFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCV 433

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              M+EA  L   M     +P++  Y  L+  +  K        +L +M++  +  +  T
Sbjct: 434 NGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYT 493

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           Y+ L+ G C  GRV E   +L+R   +G      TY  ++   ++ G    A
Sbjct: 494 YNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSA 545



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 1/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +      I  LCKL+  + AL V+  M + GF     TF+ ++ VL +G RMEEA  +
Sbjct: 210 PDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHI 269

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +        +     L+  YC +  +     + ++   + L     TY  L+ G   
Sbjct: 270 KDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTE 329

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  E+A+ L R+M D G     + +  V+  LL    +  AV          I  D   
Sbjct: 330 EGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFT 388

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L    +  EA  + ++MN+  +K
Sbjct: 389 YNILIHWLCQRRKIREALNLWEKMNETGVK 418



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 3/197 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+TLI  LC + ++ E   ++      GF  +A+T++ I++   +   M  A+ + + M 
Sbjct: 494 YNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMC 553

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y   +  YC          +L  +  + L  D   Y++L+ G C+ G + 
Sbjct: 554 AKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMS 613

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A  +L  M+ DG     S Y   +     L    +A++         I LDT  + +L 
Sbjct: 614 HALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTL- 672

Query: 286 SKLIGLERFNEANFILK 302
             + G  +     F LK
Sbjct: 673 --IDGFSKDGNVTFALK 687



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  +AY++LI   C+   +  AL+V+ +M + G   +   ++  ++     K MEEA  L
Sbjct: 594 PDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRL 653

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  +  D   Y  L+  +   GN+T    +  +M  +    D  T+ AL  G CR
Sbjct: 654 YEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCR 713

Query: 221 AGRVEEAFVLLRRM--VDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G +++A  LL  M  +D   +VL   Y  ++   LR G   +A + 
Sbjct: 714 NGDIDDARKLLDEMNRLDIRPNVL--MYNMLINGYLRNGKLQEAFRL 758



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 4/186 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-FITNTENSLSVLSDLCR 91
           P  A Y+ L+     E ++     +L    +D      + +N FIT  +N L ++ +  R
Sbjct: 594 PDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKN-LKMMEEALR 652

Query: 92  TLARLDK-GFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              ++ K G    +A Y TLI    K   +  AL++   M   G     ITF  +   L 
Sbjct: 653 LYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLC 712

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R   +++A  L++ M  + + P++  YN L+  Y   G L     +  +M E K+  D  
Sbjct: 713 RNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDT 772

Query: 210 TYDALV 215
           TYD LV
Sbjct: 773 TYDILV 778



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 5/159 (3%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           N  ++L VL      L   D   P  S Y++ I     LK ++EALR+ + M + G  L 
Sbjct: 611 NMSHALQVL-----VLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLD 665

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
             T+  ++   ++   +  A  L   M      PD   +  L    C  G++     +L 
Sbjct: 666 TATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLD 725

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           +M    +  +   Y+ L+ G  R G+++EAF L   M++
Sbjct: 726 EMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLE 764



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 102/249 (40%), Gaps = 14/249 (5%)

Query: 69  TANTFNFITN-------TENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKKID 120
           TA T+N I N         ++ +V   +C       KG P     Y + I   CK    D
Sbjct: 525 TAMTYNSIINGFIKAGMMGSAFAVYQQMCA------KGIPPNIVTYTSFIDGYCKTSCCD 578

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
            AL++++ +   G       ++ ++    +   M  A  ++ +M +  + P+++ YN  +
Sbjct: 579 LALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFI 638

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
           T Y     +     + +KM +E +  D  TY  L+ G  + G V  A  L   MV  G  
Sbjct: 639 TGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNI 698

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
             + T+  +   L R G    A K +      DI+ +  ++  L +  +   +  EA  +
Sbjct: 699 PDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRL 758

Query: 301 LKEMNKRDL 309
             EM +R +
Sbjct: 759 HDEMLERKI 767



 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 89/228 (39%), Gaps = 13/228 (5%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDE-ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D   P    Y  LI R C  + + E A  +   M + G   S   F+ ++  L   K  +
Sbjct: 311 DGLVPTDVTYTVLI-RGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWK 369

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  L + M +  + PD   YN L+   C +  +     + +KM E  +     TY +L+
Sbjct: 370 DAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLL 428

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
           L  C  G ++EA  L   M   G +    TY  +M   +    + +A   +       + 
Sbjct: 429 LCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVS 488

Query: 276 LDTELFGSL--GSKLIG--------LERFNEANFILKEMNKRDLKMGF 313
            +   + +L  G  ++G        L+RF    F+   M    +  GF
Sbjct: 489 CNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGF 536


>gi|357140804|ref|XP_003571953.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Brachypodium distachyon]
          Length = 926

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 82/149 (55%), Gaps = 3/149 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  +  + +I  +C   ++D +  ++D +   G+  S +T++ ++  L R KRM++A  
Sbjct: 391 LPIDAILNMMIIAMCSEGRLDVSYYLLDKLVAYGYEPSVLTYNIVIKYLCRQKRMDDART 450

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+ +M+   V PD++  + ++TAYC  G++ +   +  +M ++ L      YD+++   C
Sbjct: 451 LINLMQSRGVRPDMSTNSIMVTAYCKIGDIESALSLFDEMAKDGLEPSIAVYDSIIACLC 510

Query: 220 RAGRVEEAFVLLRRMVDDG---QSVLYST 245
           R G  +EA   LR+M++ G     V+Y+T
Sbjct: 511 RLGHFKEAEFTLRQMIEAGLVPDEVIYTT 539



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 105/255 (41%), Gaps = 4/255 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P  A  + ++ A   E  L+   YLL+K        +  T+N +         + D  RT
Sbjct: 392 PIDAILNMMIIAMCSEGRLDVSYYLLDKLVAYGYEPSVLTYNIVIKYLCRQKRMDD-ART 450

Query: 93  LARL--DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           L  L   +G  P  S    ++   CK+  I+ AL + D MA+ G   S   +  I++ L 
Sbjct: 451 LINLMQSRGVRPDMSTNSIMVTAYCKIGDIESALSLFDEMAKDGLEPSIAVYDSIIACLC 510

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R    +EA   +  M E  + PD   Y  LL  Y    +  A   V  +M E  L   + 
Sbjct: 511 RLGHFKEAEFTLRQMIEAGLVPDEVIYTTLLNGYSTMRHTKAACRVFDEMLERGLQPGSH 570

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
            Y AL+ G  +  ++ +A   L RM+++G +     Y  ++    R G     +  V + 
Sbjct: 571 AYGALINGLVKDNKIRKALHYLERMLEEGFATQTVIYTMLINQFFRKGEEWLGLDLVDLM 630

Query: 270 GGRDIKLDTELFGSL 284
               ++ D   +G+L
Sbjct: 631 MKNHVEPDLITYGAL 645



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 117/287 (40%), Gaps = 59/287 (20%)

Query: 32  EPTSAYYDDLVNAA---GHERDLE-TVRYLLNKR--ARDCCFNTA-NTFNFITNTENSLS 84
           EP+ A YD ++      GH ++ E T+R ++       +  + T  N ++ + +T+ +  
Sbjct: 496 EPSIAVYDSIIACLCRLGHFKEAEFTLRQMIEAGLVPDEVIYTTLLNGYSTMRHTKAACR 555

Query: 85  VLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           V  ++      L++G  P   AY  LI  L K  KI +AL  ++ M E GF    + +  
Sbjct: 556 VFDEM------LERGLQPGSHAYGALINGLVKDNKIRKALHYLERMLEEGFATQTVIYTM 609

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC-------FKGNLTA----- 191
           +++   R         L+++M +  V PDL  Y  L+T  C        + +L A     
Sbjct: 610 LINQFFRKGEEWLGLDLVDLMMKNHVEPDLITYGALVTGICRNIDRRDMRPSLAAKLDEA 669

Query: 192 ---------------------------------TSGVLKKMEEEKLGADARTYDALVLGA 218
                                               +++ + E  +  D   Y+ ++ G 
Sbjct: 670 RYMLFRLLPQISFGTRKGKQKKKRMSSEEKIDLAQNIIQDLVESGMMPDLHIYNGMLNGL 729

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           CRA ++++A+ LL  M   G    + TY  +M   +RLG   +A++ 
Sbjct: 730 CRAQKMDDAYNLLSLMEQSGVLPNHVTYTILMNNDIRLGDSNRAIQL 776



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 11/208 (5%)

Query: 108 TLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
            L+  LC+  +++ A+ V + M    G  L A  +  ++  L     ++  W L + MK+
Sbjct: 188 ALVKGLCQEGRLELAMDVFNRMRVNEGAQLDAYAYTTMIGGLFEHGYVDHGWELYQEMKD 247

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + P    YN ++  YC    + A   +   M    +  D R Y  L+   C+ G++ E
Sbjct: 248 RGMEPTPVTYNVMMWWYCKNKWVGAAMELYNVMVRGGVSPDLRCYTMLMTSLCKEGKLVE 307

Query: 227 AFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELF 281
           A  L  +M++ G     VL+ + A        + +  +A+K V  + C G  ++L     
Sbjct: 308 AEQLFTKMLERGVFPDHVLFISIARFFPKGWEVVFVRKALKAVAKLDCSGELLEL----- 362

Query: 282 GSLGSKLIGLERFNEANFILKEMNKRDL 309
            SL S    +    EA  +L EM + +L
Sbjct: 363 SSLASGCSNMSLQQEAERLLDEMMRSNL 390



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY T+IG L +   +D    +   M + G   + +T++ ++    + K +  A  L  VM
Sbjct: 221 AYTTMIGGLFEHGYVDHGWELYQEMKDRGMEPTPVTYNVMMWWYCKNKWVGAAMELYNVM 280

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
               VSPDL  Y  L+T+ C +G L     +  KM E  +  D
Sbjct: 281 VRGGVSPDLRCYTMLMTSLCKEGKLVEAEQLFTKMLERGVFPD 323



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 16/222 (7%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G  PD  T++    +V A     D+E+   L ++ A+D    +   ++ I      L   
Sbjct: 459 GVRPDMSTNSI---MVTAYCKIGDIESALSLFDEMAKDGLEPSIAVYDSIIACLCRLGHF 515

Query: 87  SDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +   TL ++ +    P +  Y TL+     ++    A RV D M E G    +  +  +
Sbjct: 516 KEAEFTLRQMIEAGLVPDEVIYTTLLNGYSTMRHTKAACRVFDEMLERGLQPGSHAYGAL 575

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++ L +  ++ +A   +E M E   +     Y  L+  +  KG       ++  M +  +
Sbjct: 576 INGLVKDNKIRKALHYLERMLEEGFATQTVIYTMLINQFFRKGEEWLGLDLVDLMMKNHV 635

Query: 205 GADARTYDALVLGACR-----------AGRVEEAFVLLRRMV 235
             D  TY ALV G CR           A +++EA  +L R++
Sbjct: 636 EPDLITYGALVTGICRNIDRRDMRPSLAAKLDEARYMLFRLL 677



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 61/143 (42%)

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           R+   +KID A  ++  + E G       ++ +L+ L R ++M++A+ L+ +M++  V P
Sbjct: 693 RMSSEEKIDLAQNIIQDLVESGMMPDLHIYNGMLNGLCRAQKMDDAYNLLSLMEQSGVLP 752

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           +   Y  L+      G+      +   +  +    D   Y+  + G   A R +EA    
Sbjct: 753 NHVTYTILMNNDIRLGDSNRAIQLFNSLNSDGHVFDDVVYNTFIKGLSLARRTKEALSFF 812

Query: 232 RRMVDDGQSVLYSTYAHVMGALL 254
             M   G     + Y  +M  LL
Sbjct: 813 LMMQKRGFVPSKAAYDKIMEQLL 835



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 37/185 (20%)

Query: 121 EALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           EA R++D +M      + AI    I+++ + G R++ ++ L++ +      P +  YN +
Sbjct: 377 EAERLLDEMMRSNLLPIDAILNMMIIAMCSEG-RLDVSYYLLDKLVAYGYEPSVLTYNIV 435

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C +  +     ++  M+   +  D  T   +V   C+ G +E A  L   M  DG 
Sbjct: 436 IKYLCRQKRMDDARTLINLMQSRGVRPDMSTNSIMVTAYCKIGDIESALSLFDEMAKDGL 495

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
               + Y  ++  L RLG+                                   F EA F
Sbjct: 496 EPSIAVYDSIIACLCRLGH-----------------------------------FKEAEF 520

Query: 300 ILKEM 304
            L++M
Sbjct: 521 TLRQM 525



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 9/163 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVD--IMAEGGFGLSAITFHPIL--SVLTRGKRMEE 156
           P  ++   L+  +C      E   VVD  ++ EG      ++  P L   + ++G  +++
Sbjct: 76  PSPASSAALLRAMCAASMYSE---VVDLFVLWEGAPSPLPVSKFPFLIHGLCSKGA-VDK 131

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L +VM  + ++P +  Y  L+  YC          +   M +  +  D     ALV 
Sbjct: 132 ARFLFDVMLGLGLAPPVRVYKSLVFTYCKARRSLEADEMCCLMVKNGMYLDRMLGTALVK 191

Query: 217 GACRAGRVEEAFVLLRRM-VDDGQSVLYSTYAHVMGALLRLGY 258
           G C+ GR+E A  +  RM V++G  +    Y  ++G L   GY
Sbjct: 192 GLCQEGRLELAMDVFNRMRVNEGAQLDAYAYTTMIGGLFEHGY 234


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 82/166 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  +I  LCK K +DEA+ + + M       + ITF+ ++  L +  R+   W L
Sbjct: 347 PGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDL 406

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++     D+  Y+ L+ A C   +L     + KKM  +++  D  TY  L+ G C+
Sbjct: 407 VDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCK 466

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            GR++ A  + + ++  G  +   TY  ++    + G + +A+  +
Sbjct: 467 GGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALL 512



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 4/216 (1%)

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            LA + K +  P    Y++L+     + ++  A  V + MA+ G      ++  ++  L 
Sbjct: 301 VLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLC 360

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + K ++EA  L E MK   V P+   +N L+   C  G +     ++ KM +    AD  
Sbjct: 361 KTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVI 420

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMV-DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           TY +L+   C+   +++A  L ++M+  + Q  +Y TY  ++  L + G    A +    
Sbjct: 421 TYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMY-TYTILIDGLCKGGRLKIAQEVFQH 479

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              +   LD   +  + S       F+EA  +L +M
Sbjct: 480 LLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKM 515



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           M L+R  P  F   Q   +  S  K   FP   + + + D     G   DL T+  L+N 
Sbjct: 60  MLLMRPPPPTF---QFNNILSSLVKMQRFPTAISLSKHLDF---KGITSDLVTLNILIN- 112

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
                CF              S SVL+ +      L +G+ P      TLI  LC   ++
Sbjct: 113 -----CFCHLGQITL------SFSVLATI------LKRGYHPDVITLTTLIKGLCLRGEV 155

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            +AL+  D +    F L  I++  +++ L +    + A  LM  ++E  + PD+  YN +
Sbjct: 156 KKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNII 215

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           + + C    +     +  +M  +++  +  TY  L+ G C  G + EA  LL  M     
Sbjct: 216 IDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNI 275

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +    T++ ++ AL + G    A   + V     +K D   + SL      +     A +
Sbjct: 276 NPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKY 335

Query: 300 ILKEMNKRDLKMGFK 314
           +   M +  +  G +
Sbjct: 336 VFNSMAQSGVTPGVQ 350



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 98/240 (40%), Gaps = 2/240 (0%)

Query: 73  FNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           +N I ++     ++ + C   + ++  + +P    Y TLI   C +  + EA+ +++ M 
Sbjct: 212 YNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMK 271

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
                    TF  ++  L +  +M+ A  ++ VM +  V PD+  YN L+  Y     + 
Sbjct: 272 LKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVK 331

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               V   M +  +    ++Y  ++ G C+   V+EA  L   M          T+  ++
Sbjct: 332 HAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLI 391

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             L + G  A     V     R    D   + SL   L      ++A  + K+M  ++++
Sbjct: 392 DGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQ 451


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 3/232 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFITNTENSLSVLSDLCR 91
           PT   Y  L+     E   E   Y L ++ RD     + N FN +     +  +  D   
Sbjct: 315 PTDVTYTVLIRGCTEEGMPEKA-YELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVS 373

Query: 92  TLARL-DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
               + D G P    Y+ LI  LC+ +KI EAL + + M E G     +T+H +L     
Sbjct: 374 LFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCV 433

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              M+EA  L   M     +P++  Y  L+  +  K        +L +M++  +  +  T
Sbjct: 434 NGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYT 493

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           Y+ L+ G C  GRV E   +L+R   +G      TY  ++   ++ G    A
Sbjct: 494 YNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSA 545



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 1/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +      I  LCKL+  + AL V+  M + GF     TF+ ++ VL +G RMEEA  +
Sbjct: 210 PDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHI 269

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +        +     L+  YC +  +     + ++   + L     TY  L+ G   
Sbjct: 270 KDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTE 329

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  E+A+ L R+M D G     + +  V+  LL    +  AV          I  D   
Sbjct: 330 EGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFT 388

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L    +  EA  + ++MN+  +K
Sbjct: 389 YNILIHWLCQRRKIREALNLWEKMNETGVK 418



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 3/197 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+TLI  LC + ++ E   ++      GF  +A+T++ I++   +   M  A+ + + M 
Sbjct: 494 YNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMC 553

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y   +  YC          +L  +  + L  D   Y++L+ G C+ G + 
Sbjct: 554 AKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMS 613

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A  +L  M+ DG     S Y   +     L    +A++F        I LDT  + +L 
Sbjct: 614 HALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTL- 672

Query: 286 SKLIGLERFNEANFILK 302
             + G  +     F LK
Sbjct: 673 --IDGFSKDGNVTFALK 687



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  +AY++LI   C+   +  AL+V+ +M + G   +   ++  ++     K MEEA   
Sbjct: 594 PDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRF 653

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  +  D   Y  L+  +   GN+T    +  +M  +    D  T+ AL  G CR
Sbjct: 654 YEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCR 713

Query: 221 AGRVEEAFVLLRRM--VDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G +++A  LL  M  +D   +VL   Y  ++   LR G   +A + 
Sbjct: 714 NGDIDDARKLLDEMNRLDIRPNVL--MYNMLINGYLRNGKLQEAFRL 758



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 4/186 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-FITNTENSLSVLSDLCR 91
           P  A Y+ L+     E ++     +L    +D      + +N FIT  +N L ++ +  R
Sbjct: 594 PDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKN-LKMMEEALR 652

Query: 92  TLARLDK-GFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              ++ K G    +A Y TLI    K   +  AL++   M   G     ITF  +   L 
Sbjct: 653 FYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLC 712

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R   +++A  L++ M  + + P++  YN L+  Y   G L     +  +M E K+  D  
Sbjct: 713 RNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDT 772

Query: 210 TYDALV 215
           TYD LV
Sbjct: 773 TYDILV 778



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 103/252 (40%), Gaps = 20/252 (7%)

Query: 69  TANTFNFITN-------TENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKKID 120
           TA T+N I N         ++ +V   +C       KG P     Y + I   CK    D
Sbjct: 525 TAMTYNSIINGFIKAGMMGSAFAVYQQMCA------KGIPPNIVTYTSFIDGYCKTSCCD 578

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
            AL++++ +   G       ++ ++    +   M  A  ++ +M +  + P+++ YN  +
Sbjct: 579 LALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFI 638

Query: 181 TAYCFKGNLTATSGVLK---KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
           T Y    NL      L+   KM +E +  D  TY  L+ G  + G V  A  L   MV  
Sbjct: 639 TGY---KNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAK 695

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G    + T+  +   L R G    A K +      DI+ +  ++  L +  +   +  EA
Sbjct: 696 GNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEA 755

Query: 298 NFILKEMNKRDL 309
             +  EM +R +
Sbjct: 756 FRLHDEMLERKI 767



 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 89/228 (39%), Gaps = 13/228 (5%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDE-ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D   P    Y  LI R C  + + E A  +   M + G   S   F+ ++  L   K  +
Sbjct: 311 DGLVPTDVTYTVLI-RGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWK 369

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  L + M +  + PD   YN L+   C +  +     + +KM E  +     TY +L+
Sbjct: 370 DAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLL 428

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
           L  C  G ++EA  L   M   G +    TY  +M   +    + +A   +       + 
Sbjct: 429 LCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVS 488

Query: 276 LDTELFGSL--GSKLIG--------LERFNEANFILKEMNKRDLKMGF 313
            +   + +L  G  ++G        L+RF    F+   M    +  GF
Sbjct: 489 CNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGF 536


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 172 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 231

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 232 FTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 291

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY AL+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 292 MKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSV 351

Query: 261 QAVKFV 266
            A K +
Sbjct: 352 DAEKML 357



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+    +L  +DE  R+   M   G      T+  +++ L +  +M++A  L
Sbjct: 157 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 216

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 217 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCK 276

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A +        +I+LD   
Sbjct: 277 KGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 336

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 337 YTALISGLCQEGRSVDAEKMLREMLSVGLK 366



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  ++D AL +   M         IT++ ++  L +   +++A  L
Sbjct: 227 PNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 286

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL+ G C+
Sbjct: 287 IDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQ 346

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 347 EGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKG 383



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 5/170 (2%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK + I  A  V D + + G   S ++++ +++   R   +
Sbjct: 116 LESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 175

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M    V PD+  Y+ L+   C +  +   + +  +M  + L  +  T+  L
Sbjct: 176 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTL 235

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQA 262
           + G C+ GRV+ A  + ++M+   QS+L    TY  ++  L + G   QA
Sbjct: 236 IDGHCKNGRVDLALEIYKQML--SQSLLPDLITYNTLIYGLCKKGDLKQA 283



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 20/210 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           ++A+G + D+ T   L+N   ++   + AN           + N     +++   C+   
Sbjct: 185 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-G 243

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+ 
Sbjct: 244 RVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYT 303

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   ++ A+   + M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 304 ALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 363

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLR 232
            L  DARTY  ++   C+ G V +   LL+
Sbjct: 364 GLKPDARTYTMIINEFCKKGDVWKGSKLLK 393



 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 44/98 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y  LI   CK   +D A      M +    L  + +  ++S L +  R  +A  +
Sbjct: 297 PDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 356

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +  M  + + PD   Y  ++  +C KG++   S +LK+
Sbjct: 357 LREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 394


>gi|242041019|ref|XP_002467904.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
 gi|241921758|gb|EER94902.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
          Length = 558

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 2/215 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   ++ T +  LC+    DEA   +D M   GF  S  TF  ++  L +  R+ +A  +
Sbjct: 176 PDAQSFATAVQCLCRQGAPDEAKLAIDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEV 235

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M+ +   P + +YN L+   C+ G L     +L K+++  +  D  T+  ++ G C+
Sbjct: 236 FDAMRALGCEPTIRSYNSLVGGLCYVGRLEEALDLLNKLKDSPMTPDIYTFTIVLDGFCK 295

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR EEA  +    +  G S    TY  ++    + G   +A   +M   G D     + 
Sbjct: 296 VGRTEEATAIFHDAIGMGLSPTIFTYNALLNGHCKEGNPLKAFALLMEMCGNDAACPPDK 355

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
             S G  L  L R  E +    +  KR  + GF++
Sbjct: 356 I-SFGIVLTALLRAGETSAAW-QTYKRMERAGFEV 388



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 48/211 (22%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y++L+G LC + +++EAL +++ + +        TF  +L    +  R EEA  +
Sbjct: 246 PTIRSYNSLVGGLCYVGRLEEALDLLNKLKDSPMTPDIYTFTIVLDGFCKVGRTEEATAI 305

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGN----------------------------LTA- 191
                 + +SP +  YN LL  +C +GN                            LTA 
Sbjct: 306 FHDAIGMGLSPTIFTYNALLNGHCKEGNPLKAFALLMEMCGNDAACPPDKISFGIVLTAL 365

Query: 192 -----TSGVL---KKMEEEKLGADARTYDALVLGACRA--------GRVEEAFVLLRRMV 235
                TS      K+ME      D R  D LV G  R         G  +E F    ++V
Sbjct: 366 LRAGETSAAWQTYKRMERAGFEVDGRALDTLVRGLFRRCATDVSALGDAKEVFA---KVV 422

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             G   +  TY  +  AL R G    AV  +
Sbjct: 423 ASGHEPVSYTYCLMAQALARGGEVDAAVALL 453



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 3/149 (2%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
            ++E ++V+D++      L+   ++ ILS L R      A  L   M    V+PD  ++ 
Sbjct: 126 PVEERVKVLDLLPRDDDALTVSDYNDILSALARAGDHATAVALFRAMP---VAPDAQSFA 182

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
             +   C +G        + +M          T+ A+V   C+ GRV +A  +   M   
Sbjct: 183 TAVQCLCRQGAPDEAKLAIDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVFDAMRAL 242

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G      +Y  ++G L  +G   +A+  +
Sbjct: 243 GCEPTIRSYNSLVGGLCYVGRLEEALDLL 271


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  L     +++A  +++ M   GF  S++T   +L   ++ +R++    +
Sbjct: 622 PNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDI 681

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M    +  D+T YN LL   C+ G     + VL++M    +  D  T++AL+LG C+
Sbjct: 682 HEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCK 741

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +  ++ AF    +M+    S   +T+  ++G L  +G   +A
Sbjct: 742 SSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEA 783



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 74/153 (48%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++TLI   C++     AL V D M   G  +  + ++ +++   R  +++ A G++++M
Sbjct: 171 GWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMM 230

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           KE  V P++  Y   +  YC    +     + + M    +  D  T  ALV G CR GR 
Sbjct: 231 KEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRF 290

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            EA+ L R M   G +  + TY  ++ +L + G
Sbjct: 291 SEAYALFREMDKVGAAPNHVTYCTLIDSLAKAG 323



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 120/291 (41%), Gaps = 3/291 (1%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R   K GA P+  T     D +  AG  ++L ++   +  R       T          +
Sbjct: 298 REMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQ 357

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
                + D  R  A  D   P    Y  LI  LCK   +DEA +V+  M E     + +T
Sbjct: 358 GKTDEVKDTLR-FALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVT 416

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC-FKGNLTATSGVLKKM 199
           F  +++   +   +++A     +MKE  ++P++  Y  L+  +  F+G   A   V   M
Sbjct: 417 FSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALE-VYHDM 475

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             E +  +    D+LV G  + G++EEA  L +     G S+ +  Y  ++  L + G  
Sbjct: 476 LCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDM 535

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             A KF      R++  D  ++    + L  L +F EA   L EM    LK
Sbjct: 536 PTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLK 586



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 1/213 (0%)

Query: 98  KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +G P     Y+TL+   C+  ++D A  V+D+M E G   +  T+ P +    R K +EE
Sbjct: 198 QGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEE 257

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+ L E M    V  D+   + L+   C  G  +    + ++M++     +  TY  L+ 
Sbjct: 258 AFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLID 317

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
              +AGR +E   LL  MV  G  +   TY  +M  L + G   +    +      ++  
Sbjct: 318 SLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSP 377

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +   +  L   L      +EA  +L EM ++ +
Sbjct: 378 NGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSI 410



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 8/216 (3%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           +A L    P   AY+ L   L  L     A  V+  M + G     +T + +L+ L R  
Sbjct: 93  IALLRSSRPTTVAYNIL---LAALSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNG 149

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           +++ A  L +    I  + D+  +N L+  YC  G+  A   V  +M  + L  D   Y+
Sbjct: 150 QVDAAAALADRGGGIH-ALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYN 208

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCG 270
            LV G CRAG+V+ A  +L  M + G     +TY   +    R     +A      MV  
Sbjct: 209 TLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRN 268

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           G  + LD     +L + L    RF+EA  + +EM+K
Sbjct: 269 G--VLLDVVTLSALVAGLCRDGRFSEAYALFREMDK 302



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 67/159 (42%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+TL+  LC      +A  V++ M   G     ITF+ ++    +   ++ A+     
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    +SP++  +N LL      G +     VL +ME+  L  +  TYD L  G  +   
Sbjct: 755 MLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSN 814

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             EA  L   MV  G     STY  ++    + G   QA
Sbjct: 815 KVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQA 853



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 55/128 (42%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           D+L+  L +  KI+EA+ +    +  G  L  + +  ++  L +   M  A+   + + +
Sbjct: 488 DSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + PD   YN  +   C  G        L +M    L  D  TY+ +++  CR G   +
Sbjct: 548 RNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAK 607

Query: 227 AFVLLRRM 234
           A  LL  M
Sbjct: 608 ALKLLHEM 615



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI  L K   +  A +    + +      A+ ++  ++ L    + +EA   +  M+
Sbjct: 522 YTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMR 581

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            + + PD + YN ++ ++C KG       +L +M+   +  +  TY+ LV G    G VE
Sbjct: 582 NMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVE 641

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           +A  LL  MV  G S    T+  V+ A
Sbjct: 642 KAKYLLNEMVSAGFSPSSLTHRRVLQA 668



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 3/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y   I   C+ K ++EA  + + M   G  L  +T   +++ L R  R  EA+ L
Sbjct: 237 PNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYAL 296

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M ++  +P+   Y  L+ +    G       +L +M    +  D  TY AL+    +
Sbjct: 297 FREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGK 356

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+ +E    LR  + D  S    TY  ++ AL +     +A + ++    + I  +   
Sbjct: 357 QGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVT 416

Query: 281 FGSLGSKLIG---LERFNEANFILKE 303
           F S+ +  +    L++  E   ++KE
Sbjct: 417 FSSVINGFVKRGLLDKATEYKRMMKE 442



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 4/213 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  L K  +  E L ++  M   G  +  +T+  ++  L +  + +E    
Sbjct: 307 PNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDT 366

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +       +SP+   Y  L+ A C   N+     VL +MEE+ +  +  T+ +++ G  +
Sbjct: 367 LRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVK 426

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
            G +++A    R M + G +    TY  ++    +      A++    M+C G  +K++ 
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEG--VKVNK 484

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            +  SL + L    +  EA  + K+ +   L +
Sbjct: 485 FIVDSLVNGLRQNGKIEEAMALFKDASGSGLSL 517



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + ++TL+G L  + +I EA  V+  M + G   + +T+  + +   +     EA  L
Sbjct: 762 PNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRL 821

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      P ++ YN L++ +   G +T    + K M++  +   + TYD LV G  R
Sbjct: 822 YCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSR 881

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
                E    L+ M + G S    T + +  A  + G   QA + +
Sbjct: 882 IRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLL 927



 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 83/213 (38%), Gaps = 1/213 (0%)

Query: 96  LDKGFPRKSAYDTLIGRLC-KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +  GF   S     + + C + +++D  L + + M   G       ++ +L VL      
Sbjct: 651 VSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMT 710

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  ++E M    ++PD   +N L+  +C   +L        +M  + +  +  T++ L
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTL 770

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    GR+ EA  +L  M   G      TY  +     +     +A++      G+  
Sbjct: 771 LGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGF 830

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                 + +L S         +A  + K+M KR
Sbjct: 831 VPKVSTYNALISDFTKAGMMTQAKELFKDMQKR 863



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 70/185 (37%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+  I  LC L K  EA   +  M   G      T++ ++    R     +A  
Sbjct: 551 LPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALK 610

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  MK   + P+L  YN L+      G +     +L +M        + T+  ++    
Sbjct: 611 LLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACS 670

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           ++ R++    +   M++ G     + Y  ++  L   G   +A   +    G  I  DT 
Sbjct: 671 QSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTI 730

Query: 280 LFGSL 284
            F +L
Sbjct: 731 TFNAL 735



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 2/165 (1%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN +     S+  + +    L  ++K    P    YD L     K     EA+R+   M
Sbjct: 766 TFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEM 825

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF     T++ ++S  T+   M +A  L + M++  V P    Y+ L++ +    N 
Sbjct: 826 VGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNG 885

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           T     LK M+E+       T   +     + G   +A  LL+ +
Sbjct: 886 TEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 59/146 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI   CK   +D A      M       +  TF+ +L  L    R+ EA  +
Sbjct: 727 PDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTV 786

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  + P+   Y+ L T +  + N      +  +M  +       TY+AL+    +
Sbjct: 787 LIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTK 846

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
           AG + +A  L + M   G      TY
Sbjct: 847 AGMMTQAKELFKDMQKRGVHPTSCTY 872


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 68/127 (53%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC   K++EA  + D M       + IT + +L+   + K +++A  L
Sbjct: 248 PNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGEL 307

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M + R++P++T YN L+ AYC   N+     + + M  + +  D  TY+ L++G CR
Sbjct: 308 FEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCR 367

Query: 221 AGRVEEA 227
            G +E A
Sbjct: 368 KGDLEGA 374



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++ LI   C  K +  A++V   M   G   + +T++ +++ L    ++ EA  L
Sbjct: 213 PNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTL 272

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P++  +N LL  +C    +     + + M ++++  +  TY+ L+   C+
Sbjct: 273 RDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCK 332

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +E+AF L R M+  G     STY  ++  L R G    A   V     + +K D   
Sbjct: 333 DENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLIT 392

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L       +   +L EM K+ LK
Sbjct: 393 YNILMDSLCNKGEMKKTLRLLDEMCKKGLK 422



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 74/161 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+   CK K + +A  + + M +     +  T++ ++    + + ME+A+ L
Sbjct: 283 PNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFAL 342

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M    V PD++ YN L+   C KG+L      + +M+ + L AD  TY+ L+   C 
Sbjct: 343 YRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCN 402

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
            G +++   LL  M   G      TY  ++    + G   Q
Sbjct: 403 KGEMKKTLRLLDEMCKKGLKPSQLTYNTMIDGYSKEGNLRQ 443



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
           ++ G  LS  + +P++S L +   M +A  +++ MK   + P+   +N L+  +C   N+
Sbjct: 175 SDYGLKLSVTSCNPLMSGLVK---MYKADAILKEMKADGICPNEVTFNILIDGFCNDKNV 231

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           +    V  +M  + +  +  TY++L+ G C  G+V EA  L  +MV+
Sbjct: 232 SVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVN 278



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 9/210 (4%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           ++ + L+  L K+ K D  L+    M   G   + +TF+ ++      K +  A  +   
Sbjct: 184 TSCNPLMSGLVKMYKADAILKE---MKADGICPNEVTFNILIDGFCNDKNVSVAMKVFAE 240

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    V P++  YN L+   C  G +   + +  +M    L  +  T++AL+ G C+   
Sbjct: 241 MNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKM 300

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           V++A  L   M     +   +TY  ++ A  +      A     +  G+ +  D   +  
Sbjct: 301 VKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNC 360

Query: 284 LGSKLIGLERFNE---ANFILKEMNKRDLK 310
           L   ++GL R  +   A   + EM+ + LK
Sbjct: 361 L---IVGLCRKGDLEGARNRVSEMDTKHLK 387


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  L++GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E AF   + M+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 4/216 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  ++E  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++  +    +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLR 316
           + +L S L    R  +A  +L+EM    L +G KL 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREM----LSVGLKLE 380



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +
Sbjct: 233 LDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL 292

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M    + PD   Y  L+   C +G+L       K M +E +  D   Y AL
Sbjct: 293 KQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTAL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M+  G  +   TY  ++    + G
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKG 395



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+   CK  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E + L   M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 20/216 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           + A+G + D+ T   L+N   ++   + AN           + N     +++   C+   
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKN-G 255

Query: 95  RLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           R+D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+ 
Sbjct: 256 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A+   ++M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  +  TY  ++   C+ G V     L++ M  DG
Sbjct: 376 GLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411



 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDNG 236



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 54/135 (40%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E   E      L  +N L+
Sbjct: 84  DAIECXRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILM 143

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
            ++C +G +     V   + +  L     +++ L+ G  + G + E F L   M   G  
Sbjct: 144 HSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQ 203

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 204 PDVYTYSVLINGLCK 218


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 72/146 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  YD LI  LCK+ K+DEA  V   M+E GF  +  T+  ++    + KR + A  +
Sbjct: 673 PNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 732

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E   +P++  Y  ++   C  G       +++ MEE+    +  TY A++ G  R
Sbjct: 733 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGR 792

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
            G++E    LL RM   G +  Y TY
Sbjct: 793 IGKIETCLELLERMGSKGVAPNYVTY 818



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 7/156 (4%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E + SV+ ++      + +GF P  S Y  ++G LC   K++ A  + + M  GG     
Sbjct: 465 EKAFSVIREM------IGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADV 518

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T+  ++    +   +E+A      M+E+  +P++  Y  L+ AY     ++  + + + 
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           M  E    +  TY AL+ G C+AG++E+A  +  RM
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERM 614



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   CKL +++EA +++D M+  G   + I +  ++  L +  +++EA  +
Sbjct: 638 PNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 697

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E      L  Y+ L+  Y         S VL KM E     +   Y  ++ G C+
Sbjct: 698 KAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 757

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G+ +EA+ L++ M + G      TY  ++    R+G
Sbjct: 758 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIG 794



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 120/305 (39%), Gaps = 39/305 (12%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN--TFNF----ITNTENSLSVL 86
           P+   ++ LV+A     D      LL K  +  C +T     +N     I   ++SLS  
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVK--CGHTPGYVVYNILIGSICGDKDSLS-- 425

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGR---------LCKLKKIDEALRVVDIMAEGGFGLS 137
              C  L   +K +    A   ++ +         LC   K ++A  V+  M   GF   
Sbjct: 426 ---CHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPD 482

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
             T+  +L  L    +ME A+ L E MK   +  D+  Y  ++ ++C  G +        
Sbjct: 483 TSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 542

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M E     +  TY AL+    +A +V  A  L   M+ +G      TY+ ++    + G
Sbjct: 543 EMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAG 602

Query: 258 YYAQAVK-FVMVCGGRDI----------------KLDTELFGSLGSKLIGLERFNEANFI 300
              +A + F  +CG +D+                + +  ++G+L      L R  EA  +
Sbjct: 603 QMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKL 662

Query: 301 LKEMN 305
           L  M+
Sbjct: 663 LDAMS 667



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 93/206 (45%), Gaps = 2/206 (0%)

Query: 31  DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90
           + P    Y  L++       +E  R LL+  + + C      ++ + +    +  L +  
Sbjct: 636 ERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 695

Query: 91  RTLARL-DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
              A + + GFP     Y +LI R  K+K+ D A +V+  M E     + + +  ++  L
Sbjct: 696 EVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGL 755

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +  + +EA+ LM++M+E    P++  Y  ++  +   G +     +L++M  + +  + 
Sbjct: 756 CKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNY 815

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRM 234
            TY  L+   C+ G ++ A  LL  M
Sbjct: 816 VTYRVLIDHCCKNGALDVAHNLLEEM 841



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 41/203 (20%)

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           TL   +   P    Y  LI  LC+    +EA+  ++ M       + +T+  +L      
Sbjct: 291 TLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK 350

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM------------ 199
           K++     ++ +M      P    +N L+ AYC  G+ +    +LKKM            
Sbjct: 351 KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVY 410

Query: 200 ---------EEEKLG------ADARTYDALVLGA--------------CRAGRVEEAFVL 230
                    +++ L       A+    + L  G               C AG+ E+AF +
Sbjct: 411 NILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSV 470

Query: 231 LRRMVDDGQSVLYSTYAHVMGAL 253
           +R M+  G     STY+ V+G L
Sbjct: 471 IREMIGQGFIPDTSTYSKVLGYL 493



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   CK   +D A  +++ M +  +   A  +  ++      K   E+ GL
Sbjct: 813 PNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGF--NKEFIESLGL 870

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME--EEKLGADARTYDALVLGA 218
           ++ + +   +P L+ Y  L+        L     +L+++      L   + TY++L+   
Sbjct: 871 LDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESL 930

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV-----MVC 269
           C A +V++AF L   M   G      T+  ++  L R    ++A+  +     MVC
Sbjct: 931 CLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLLDFISHMVC 986


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 102/202 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T+I  LC  ++++EA  + + + E G   + IT++ I+  L R  R ++A  L
Sbjct: 449 PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 508

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M     S D+ +YN L+ A C  GN+  +  +L++M E+ +  +  +Y+ L+   C+
Sbjct: 509 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             RV +A  L ++M++ G +    TY  ++  L ++G+   A+  +      ++  D   
Sbjct: 569 ERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIIT 628

Query: 281 FGSLGSKLIGLERFNEANFILK 302
           +  L S    +   ++A  +L 
Sbjct: 629 YNILISWHCKVRLLDDAAMLLN 650



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 117/241 (48%), Gaps = 2/241 (0%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C   A+T++ + +    L  +S   R L  ++K GF P    Y  ++   CK    D+  
Sbjct: 342 CQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTR 401

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +++ M+  G  L++  ++ ++  L +  RM+EA GL++ M+    +PD+ +YN ++   
Sbjct: 402 ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHL 461

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C    +     + + + EE + A+  TY+ ++    R GR ++A  L + M+  G S+  
Sbjct: 462 CNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDV 521

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            +Y  ++ A+ + G   +++  +     + IK +   +  L S+L    R  +A  + K+
Sbjct: 522 VSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQ 581

Query: 304 M 304
           M
Sbjct: 582 M 582



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 100/212 (47%), Gaps = 4/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCKL +I  A+R++  M + GF  + +T+  +L    +    ++   L
Sbjct: 344 PDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 403

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    ++ +   YN ++ A C  G +    G++++M  +    D  +Y+ ++   C 
Sbjct: 404 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 463

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
             ++EEA  +   ++++G      TY  ++ ALLR G +  AV+    M+  G    LD 
Sbjct: 464 NEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG--CSLDV 521

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             +  L   +      + +  +L+EM ++ +K
Sbjct: 522 VSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 73/129 (56%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ LI  +CK   +D +L +++ MAE G   + ++++ ++S L + +R+ +A  L + M
Sbjct: 523 SYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQM 582

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               ++PD+  YN L+   C  G + A   +L+K+  E +  D  TY+ L+   C+   +
Sbjct: 583 LNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLL 642

Query: 225 EEAFVLLRR 233
           ++A +LL R
Sbjct: 643 DDAAMLLNR 651



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 126/292 (43%), Gaps = 9/292 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           +++ + R   + G  PD   +  Y  +++A   +  +     LLN+     C    NTF+
Sbjct: 193 EALALLRGMARHGCVPD---AVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFD 249

Query: 75  FITNTENSLSVLSDLCRTLAR-LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            +      L  + +  R + R + KG  P    Y  L+  LC++++ DEA  ++  + E 
Sbjct: 250 DVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE- 308

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
              L+ + F+ ++       ++ EA  L E M      PD   Y+ L+   C  G +++ 
Sbjct: 309 ---LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSA 365

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L++ME++    +  TY  ++   C+ G  ++   LL  M   G ++    Y  ++ A
Sbjct: 366 VRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYA 425

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           L + G   +A+  +     +    D   + ++   L   E+  EA  + + +
Sbjct: 426 LCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL 477



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 4/217 (1%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           R +   D+  P    +      LC+L + +EAL ++  MA  G    A+ +  ++  L  
Sbjct: 163 RRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCD 222

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + EA  L+  M  +  + D+  ++ ++   C  G +   + ++ +M  +       T
Sbjct: 223 QGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMT 282

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  L+ G CR  + +EA  +L R V +   VL++T   V+G  L  G  A+A +     G
Sbjct: 283 YGFLLQGLCRVRQADEARAMLGR-VPELNVVLFNT---VIGGCLAEGKLAEATELYETMG 338

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            +  + D   +  L   L  L R + A  +L+EM K+
Sbjct: 339 LKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKK 375



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 115/268 (42%), Gaps = 30/268 (11%)

Query: 3   LLRKLPTKFLIPQSV---LVTRSFTKSGAFPD-----EPTSAY--------YDDLVNAAG 46
           LLR++  K   P  V   +V  SF K+G + D     E  SA         Y+ ++ A  
Sbjct: 368 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALC 427

Query: 47  HERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSVLSDLCRTLARLDKG 99
            +  ++    L+ +     C     ++N I          E +  +  +L      L++G
Sbjct: 428 KDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL------LEEG 481

Query: 100 FPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
                  Y+T+I  L +  +  +A+R+   M   G  L  ++++ ++  + +   ++ + 
Sbjct: 482 VVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSL 541

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+E M E  + P+  +YN L++  C +  +     + K+M  + L  D  TY+ L+ G 
Sbjct: 542 VLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGL 601

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           C+ G +  A  LL ++ ++       TY
Sbjct: 602 CKMGWMHAALNLLEKLHNENVHPDIITY 629



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 78  NTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           N + SL +L ++       +KG  P   +Y+ LI  LCK +++ +AL +   M   G   
Sbjct: 536 NVDRSLVLLEEMA------EKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAP 589

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
             +T++ +++ L +   M  A  L+E +    V PD+  YN L++ +C
Sbjct: 590 DIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHC 637


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 123/305 (40%), Gaps = 13/305 (4%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           ++V +     + G  PD  T   Y  +VN      D++    LLNK            FN
Sbjct: 206 EAVALVDQMVQRGCQPDLVT---YGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFN 262

Query: 75  FITNT---ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
            I ++      + V  DL   +    KG  P    Y++LI  LC   +  +A R++  M 
Sbjct: 263 TIIDSLCKYRHVEVAVDLFTEMET--KGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           E     + +TF+ ++    +  ++ EA  L E M +  + PD   YN L+  +C    L 
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               + K M  +    + +TY+ L+ G C+  RVE+   L R M   G      TY  ++
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440

Query: 251 GALLRLG--YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
               + G    AQ V   MV     +  D   +  L   L    + + A  I K + K +
Sbjct: 441 QGFFQAGDCDSAQMVFKQMV--SNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSE 498

Query: 309 LKMGF 313
           +++  
Sbjct: 499 MELNI 503



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 2/240 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T++   N     S LS     LA++ K G+ P      +L+   C  K+I +A+ +VD M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E G+     TF  ++  L    +  EA  L++ M +    PDL  Y  ++   C +G++
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +L KME  ++ A+   ++ ++   C+   VE A  L   M   G      TY  +
Sbjct: 240 DLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSL 299

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   G ++ A + +     + I  +   F +L        +  EA  + +EM +R +
Sbjct: 300 INCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSI 359



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 70/146 (47%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI   CK K++++ + +   M++ G   + +T+  I+    +    + A  
Sbjct: 395 LPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQM 454

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M   RV  D+  Y+ LL   C  G L     + K +++ ++  +   Y+ ++ G C
Sbjct: 455 VFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMC 514

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYST 245
           +AG+V EA+ L   +      V Y+T
Sbjct: 515 KAGKVGEAWDLFCSLSIKPDVVTYNT 540



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 3/202 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + L  RL  + K+D+A+ +   M +     S + F+ +LS + +  + E    L E M+ 
Sbjct: 52  EILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQT 111

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
           + +S DL  Y+  +  +C +  L+    VL KM +     D  T  +L+ G C + R+ +
Sbjct: 112 LGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISD 171

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  L+ +MV+ G      T+  ++  L      ++AV  V     R  + D   +G++ +
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231

Query: 287 KLIGLERFNEANFILKEMNKRD 308
              GL +  + +  L  +NK +
Sbjct: 232 ---GLCKRGDIDLALNLLNKME 250



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 93/208 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI  L    K  EA+ +VD M + G     +T+  +++ L +   ++ A  L
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNL 245

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+  R+  ++  +N ++ + C   ++     +  +ME + +  +  TY++L+   C 
Sbjct: 246 LNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCN 305

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LL  M++   +    T+  ++ A  + G   +A K       R I  DT  
Sbjct: 306 YGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTIT 365

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           +  L +      R +EA  + K M  +D
Sbjct: 366 YNLLINGFCMHNRLDEAKQMFKFMVSKD 393



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/284 (18%), Positives = 110/284 (38%), Gaps = 20/284 (7%)

Query: 31  DEPTSAYYDDLVNAAGHERDLETV----RYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           + PT   + +L  +   ER   +     R +L  R  D           I   ++++ + 
Sbjct: 23  NPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSD-----------IIKVDDAVDLF 71

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
            D+ ++     + FP    ++ L+  + K+ K +  + + + M   G      T+   ++
Sbjct: 72  GDMVKS-----RPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
              R  ++  A  ++  M ++   PD+   + LL  YC    ++    ++ +M E     
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D  T+  L+ G     +  EA  L+ +MV  G      TY  V+  L + G    A+  +
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLL 246

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  IK +  +F ++   L        A  +  EM  + ++
Sbjct: 247 NKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIR 290



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 89/206 (43%), Gaps = 3/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C   ++DEA ++   M       +  T++ +++   + KR+E+   L
Sbjct: 361 PDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVEL 420

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  +  +   Y  ++  +   G+  +   V K+M   ++  D  TY  L+ G C 
Sbjct: 421 FREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCS 480

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+++ A V+ + +      +    Y  ++  + + G   +A  + + C    IK D   
Sbjct: 481 YGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEA--WDLFC-SLSIKPDVVT 537

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + ++ S L       EA+ + ++M +
Sbjct: 538 YNTMISGLCSKRLLQEADDLFRKMKE 563



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  L+  LC   K+D AL +   + +    L+   ++ ++  + +  ++ EAW L    
Sbjct: 470 TYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLF--- 526

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
             + + PD+  YN +++  C K  L     + +KM+E+    ++ TY+ L+    R    
Sbjct: 527 CSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDR 586

Query: 225 EEAFVLLRRMVDDG 238
             +  L++ M   G
Sbjct: 587 AASAELIKEMRSSG 600



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T+I  +CK  K+ EA    D+          +T++ ++S L   + ++EA  L   MK
Sbjct: 506 YNTMIEGMCKAGKVGEAW---DLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMK 562

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E    P+   YN L+ A     +  A++ ++K+M       DA T  +LV      GR++
Sbjct: 563 EDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTI-SLVTNMLHDGRLD 621

Query: 226 EAFV 229
           ++F+
Sbjct: 622 KSFL 625


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 78/154 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S ++TL+   CK +K+ E   V  +M + G   + +T+  ++      K++ +A  +
Sbjct: 311 PNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKI 370

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V+ ++ +YN ++  +C    +     +  +M  + +  D  TY++L+ G C+
Sbjct: 371 FNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCK 430

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +G++  AF L+  M D GQ     TY  ++ ALL
Sbjct: 431 SGKISYAFQLVNEMHDRGQPPNIITYNSILNALL 464



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 71/131 (54%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y TLI  LCK+ +   AL+++  +      L+A+ ++ ++  +++ K + +A+ L   M
Sbjct: 175 SYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEM 234

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
              R+SPD+  Y+ L+  +   G L     +  KM  E +  D  T++ LV G C+ GR+
Sbjct: 235 VAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRL 294

Query: 225 EEAFVLLRRMV 235
           ++A  +L  M+
Sbjct: 295 KKAKNVLDMMM 305



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/166 (19%), Positives = 74/166 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+   CK  ++ +A  V+D+M       +  TF+ ++    + ++M+E   +
Sbjct: 276 PDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTV 335

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M +  + P++  Y  L+  YC    +     +   M +  + A+  +Y+ ++ G C+
Sbjct: 336 FAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCK 395

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             +V++A  L   M          TY  ++  L + G  + A + V
Sbjct: 396 IKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLV 441



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 84/186 (45%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D A+ + + +      L+A  F+ IL  L + K       L + M+   ++P+   +N 
Sbjct: 49  VDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNI 108

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+  +C  G +     VL K+ +     D  T +  + G C  G++ +A     ++V  G
Sbjct: 109 LINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALG 168

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
             +   +Y  ++  L ++G    A++ +    G+ ++L+  ++ ++   +   +  N+A 
Sbjct: 169 FHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAF 228

Query: 299 FILKEM 304
            +  EM
Sbjct: 229 DLYSEM 234



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 68/133 (51%), Gaps = 16/133 (12%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ +I   CK+KK+D+A+++   M         +T++ ++  L +  ++  A+ L+  M
Sbjct: 385 SYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEM 444

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    P++  YN +L A            +L K++++ +  +  T   L+ G C++G++
Sbjct: 445 HDRGQPPNIITYNSILNA------------LLTKLKDQGIQPNMHTDTILIKGLCQSGKL 492

Query: 225 EEAFVLLRRMVDD 237
           E A    R++ +D
Sbjct: 493 EAA----RKVFED 501



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 91  RTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + L R+D    + +A  Y+T+I  + K K +++A  +   M         +T+    S L
Sbjct: 194 QLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTY----SAL 249

Query: 149 TRG----KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
            RG     ++++A  L   M    + PD+  +N L+  +C +G L     VL  M  + +
Sbjct: 250 IRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDI 309

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +  T++ LV G C+  +++E   +   M+  G      TY  +M     +    +A K
Sbjct: 310 KPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKK 369

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                  R +  +   +  + +    +++ ++A  +  EM+ + +
Sbjct: 370 IFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHI 414



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ ++G L K K     L +   M   G   + +TF+ +++   +   +  A+ ++  + 
Sbjct: 71  FNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKIL 130

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           ++   PD+   N  +  +C KG +        K+       D  +Y  L+ G C+ G   
Sbjct: 131 KMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETR 190

Query: 226 EAFVLLRRMVDDGQ-----SVLYST 245
            A  LLRR+  DG+     +V+Y+T
Sbjct: 191 AALQLLRRV--DGKLVQLNAVMYNT 213



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/207 (18%), Positives = 89/207 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI     + K+ +A+ + + M          TF+ ++    +  R+++A  +
Sbjct: 241 PDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNV 300

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M    + P+++ +N L+  +C    +     V   M ++ +  +  TY +L+ G C 
Sbjct: 301 LDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCL 360

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +V +A  +   M   G +    +Y  ++    ++    +A+K  +    + I  D   
Sbjct: 361 VKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVT 420

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL   L    + + A  ++ EM+ R
Sbjct: 421 YNSLIDGLCKSGKISYAFQLVNEMHDR 447



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 84/210 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI   C+L  I  A  V+  + + G+    IT +  +       ++ +A   
Sbjct: 101 PNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNF 160

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +  +    D  +Y  L+   C  G   A   +L++++ + +  +A  Y+ ++ G  +
Sbjct: 161 HDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSK 220

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V +AF L   MV    S    TY+ ++     +G    A+         +IK D   
Sbjct: 221 DKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYT 280

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F  L        R  +A  +L  M  +D+K
Sbjct: 281 FNILVDGFCKEGRLKKAKNVLDMMMIQDIK 310


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 4/200 (2%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           D L+    K   +  A +VV +M + G   +    + +L  L R   ME  W L   M+ 
Sbjct: 179 DVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEG 238

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + PD+  Y+  L A+C   +  A   V ++M       +  TY+ ++ G CR+G VEE
Sbjct: 239 AGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEE 298

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSL 284
           AF     MVD G S    TY  +M  L + G   +A   +  M C G  +K +  ++ +L
Sbjct: 299 AFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSG--LKPNVVVYATL 356

Query: 285 GSKLIGLERFNEANFILKEM 304
               +   +  EA  IL EM
Sbjct: 357 VDGFMKEGKAAEAFDILNEM 376



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 13/243 (5%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SL++ L T   I ++        K G  PDE T   Y  L++     R+LE    LL + 
Sbjct: 530 SLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFT---YSGLIHGYCKTRNLEKADQLLQQM 586

Query: 62  ARDCCFNTANTFN------FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCK 115
                   A+T+       F +N    +S  S L   L   DK  P    Y  +I  L +
Sbjct: 587 LNSGLKPNADTYTDLLEGYFKSNDHEKVS--SILQSMLGSGDK--PDNHIYGIVIRNLSR 642

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
            + ++ A  V+  + + G       +  ++S L +   ME+A GL++ M +  + P +  
Sbjct: 643 SENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVC 702

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           YN L+  +C  G+++    V   +  + L  +  TY AL+ G C+ G + +AF L + M+
Sbjct: 703 YNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDML 762

Query: 236 DDG 238
           D G
Sbjct: 763 DRG 765



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 76/166 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T +   CK +  D A +V + M      ++ +T++ ++S L R   +EEA+G 
Sbjct: 243 PDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGF 302

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  +SPD   Y  L+   C  G L     +L +M    L  +   Y  LV G  +
Sbjct: 303 KEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMK 362

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G+  EAF +L  M+  G       Y +++  L ++G   +A K +
Sbjct: 363 EGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL 408



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 88/210 (41%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  +I  LC+  +  EA  +++ M   G   +A  + P++   ++   +  A  
Sbjct: 452 LPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACE 511

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +E M +  V PDL  YN L+      G +        ++++  L  D  TY  L+ G C
Sbjct: 512 SLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYC 571

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +   +E+A  LL++M++ G      TY  ++    +   + +    +    G   K D  
Sbjct: 572 KTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNH 631

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           ++G +   L   E    A  +L E+ K  L
Sbjct: 632 IYGIVIRNLSRSENMEVAFMVLTEVEKNGL 661



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 4/207 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I  LC+   ++EA    + M + G    A T+  +++ L +G R++EA  L++ M 
Sbjct: 283 YNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMS 342

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y  L+  +  +G       +L +M    +  +   YD L+ G C+ G++ 
Sbjct: 343 CSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLG 402

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD--IKLDTELFGS 283
            A  LL  M+  G      TY  +M    +  +Y +   F ++   R+  I  +   +G 
Sbjct: 403 RASKLLNEMIKVGHRPDTFTYHPLMQGHFQ--HYDKDGAFELLNEMRNSGILPNAYTYGI 460

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           + + L       EA  +L+EM    LK
Sbjct: 461 MINGLCQNGESKEAGNLLEEMISEGLK 487



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 24/254 (9%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNT 79
           + F +    P  P    Y   + A    RD +  + +  + R RDC  N   T+N +   
Sbjct: 233 KGFMEGAGIP--PDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEV-TYNVM--- 286

Query: 80  ENSLSVLSDLCRTLA----------RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
                 +S LCR+ A           +D G  P    Y  L+  LCK  ++ EA  ++D 
Sbjct: 287 ------ISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDE 340

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M+  G   + + +  ++    +  +  EA+ ++  M    V P+   Y+ L+   C  G 
Sbjct: 341 MSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQ 400

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L   S +L +M +     D  TY  L+ G  +    + AF LL  M + G      TY  
Sbjct: 401 LGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGI 460

Query: 249 VMGALLRLGYYAQA 262
           ++  L + G   +A
Sbjct: 461 MINGLCQNGESKEA 474



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 87/210 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  YD LI  LCK+ ++  A ++++ M + G      T+HP++    +    + A+ L
Sbjct: 383 PNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFEL 442

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   + P+   Y  ++   C  G       +L++M  E L  +A  Y  L++G  +
Sbjct: 443 LNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSK 502

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +  A   L  M           Y  ++  L  +G   +A ++      R +  D   
Sbjct: 503 EGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFT 562

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L           +A+ +L++M    LK
Sbjct: 563 YSGLIHGYCKTRNLEKADQLLQQMLNSGLK 592



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 4/208 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +   + L+  L +   ++   ++   M   G      T+   L    + +  + A  +
Sbjct: 208 PTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKV 267

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M+    + +   YN +++  C  G +    G  ++M +  L  DA TY AL+ G C+
Sbjct: 268 FEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCK 327

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
            GR++EA  LL  M   G       YA ++   ++ G  A+A   +  M+  G  ++ + 
Sbjct: 328 GGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAG--VQPNK 385

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
            ++ +L   L  + +   A+ +L EM K
Sbjct: 386 IMYDNLIRGLCKIGQLGRASKLLNEMIK 413



 Score = 43.9 bits (102), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 14/165 (8%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           S++S LC+ +A ++K              P    Y+ LI   C+   I  A  V D +  
Sbjct: 670 SLISGLCK-MADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILA 728

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G   + +T+  ++    +   + +A+ L + M +  ++PD   YN L T      +L  
Sbjct: 729 KGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQ 788

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
              + ++M      A    +  LV G C+ GR++E   LL  M+D
Sbjct: 789 ALFLTEEMFNRGY-AHVSLFSTLVRGFCKRGRLQETEKLLHVMMD 832



 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 18/220 (8%)

Query: 16  SVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD------CCFNT 69
           + +V     K+G  PD      Y  L++      D+E    LL++ A++       C+N 
Sbjct: 649 AFMVLTEVEKNGLVPD---LHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNA 705

Query: 70  -ANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVD 127
             + F    +   + +V   +      L KG  P    Y  LI   CK   I +A  +  
Sbjct: 706 LIDGFCRSGDISRARNVFDSI------LAKGLLPNCVTYTALIDGNCKNGDITDAFDLYK 759

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M + G    A  ++ + +  +    +E+A  L E M   R    ++ ++ L+  +C +G
Sbjct: 760 DMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFN-RGYAHVSLFSTLVRGFCKRG 818

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            L  T  +L  M + ++  +A+T + ++    +AG++ EA
Sbjct: 819 RLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEA 858


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1114

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 106/241 (43%), Gaps = 10/241 (4%)

Query: 23   FTKS-GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
            FTK  G  P  PT   Y+ L+        +E  + +  +     C     T+NF+ +   
Sbjct: 777  FTKDLGVQPKLPT---YNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYG 833

Query: 82   SLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSA 138
                + +L      +   +  P    ++ +I  L K   +D+AL +  D+M++  F  +A
Sbjct: 834  KSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 893

Query: 139  ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
             T+ P++  L++  R+ EA  L E M +    P+   YN L+  +   G   A   + K+
Sbjct: 894  CTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKR 953

Query: 199  MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAHVMGALLR 255
            M +E +  D +TY  LV   C  GRV+E     R + + G +   V Y+   + +G   R
Sbjct: 954  MVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHR 1013

Query: 256  L 256
            L
Sbjct: 1014 L 1014



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 3/220 (1%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
            PT+  Y  L++       L   + L    +   C      +N + N           C  
Sbjct: 891  PTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACAL 950

Query: 93   LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              R+ K    P    Y  L+  LC + ++DE L     + E G     + ++ I++ L +
Sbjct: 951  FKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGK 1010

Query: 151  GKRMEEAWGLMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              R+EEA  L   MK+ R ++PDL  YN L+      G +     +  +++   L  +  
Sbjct: 1011 FHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVF 1070

Query: 210  TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            T++AL+ G   +G+ E A+ + + MV  G S    TY  +
Sbjct: 1071 TFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 79/165 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++    K+ +IDEA++++  M E       I  + +++ L +  R++EAW +
Sbjct: 503 PDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKM 562

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MKE+++ P +  YN LL      G +     + + M ++    +  T++ L    C+
Sbjct: 563 FMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK 622

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
              V  A  +L +M+D G      TY  ++  L++ G   +A+ F
Sbjct: 623 NDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCF 667



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 70/156 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +   I  L +  KI+EA  ++  M + G G   +T+  ++  L   ++++ A  +
Sbjct: 258 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 317

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK  R  PD   Y  LL  +    +L + +    +ME++    D  T+  LV   C+
Sbjct: 318 FAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCK 377

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           AG   EAF  L  M D G      TY  ++  LLR+
Sbjct: 378 AGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRV 413



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     ++LI  L K  ++DEA ++   M E     + +T++ +L+ L +  +++EA  L
Sbjct: 538 PDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIEL 597

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +    P+   +N L    C    +T    +L KM +     D  TY+ ++ G  +
Sbjct: 598 FEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVK 657

Query: 221 AGRVEEAFVLLRRM 234
            G+V+EA     +M
Sbjct: 658 NGQVKEAMCFFHQM 671



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 109/283 (38%), Gaps = 43/283 (15%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F K      +P    Y  L++     RDL++V    ++  +D       TF  + +   +
Sbjct: 318 FAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVD---A 374

Query: 83  LSVLSDLCRTLARLD----KG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           L    +     A+LD    +G  P    Y+TLI  L ++ ++D+AL + D M   G   +
Sbjct: 375 LCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPT 434

Query: 138 AITF-----------------------------------HPILSVLTRGKRMEEAWGLME 162
           A T+                                   +  L  L +  R  EA  +  
Sbjct: 435 AYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFY 494

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            +K+I + PD   YN ++  Y   G +     +L +M E     D    ++L+    +A 
Sbjct: 495 GLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKAD 554

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           RV+EA+ +  RM +        TY  ++  L + G   +A++ 
Sbjct: 555 RVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIEL 597



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 4/216 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    +  L+  LCK     EA   +D+M + G   +  T++ ++  L R  R+++
Sbjct: 359 DGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDD 418

Query: 157 AWGLMEVMKEIRVSPDLTAYNYL--LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           A  + + M+ + V P  TAY Y+  +  Y   G+  +     +KM+ + +  +    +A 
Sbjct: 419 ALEIFDNMESLGVKP--TAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNAS 476

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +    +AGR  EA  +   + D G      TY  +M    ++G   +A+K +        
Sbjct: 477 LYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCC 536

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + D  +  SL + L   +R +EA  +   M +  LK
Sbjct: 537 EPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK 572



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 88/215 (40%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           LD   P    Y +L+  L K + I+  + ++  M   G   +  TF   + VL R  ++ 
Sbjct: 218 LDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKIN 277

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA+ +++ M +    PD+  Y  L+ A C    L     V  KM+  +   D  TY  L+
Sbjct: 278 EAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLL 337

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
                   ++        M  DG      T+  ++ AL + G + +A   + V   + I 
Sbjct: 338 DRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGIL 397

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +   + +L   L+ + R ++A  I   M    +K
Sbjct: 398 PNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVK 432



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 6/128 (4%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS---PDLTAYNYLLTAYCF 185
           M E GF L+A +++ ++ +L + +   EA   MEV + + +    P L  Y+ L+     
Sbjct: 181 MREFGFVLNAYSYNGLIHLLLKSRFCTEA---MEVYRRMILDGFRPSLQTYSSLMVGLGK 237

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           + ++ +  G+LK+ME   L  +  T+   +    RAG++ EA+ +L+RM D+G      T
Sbjct: 238 RRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVT 297

Query: 246 YAHVMGAL 253
           Y  ++ AL
Sbjct: 298 YTVLIDAL 305



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 63/130 (48%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ LI  L K +   EA+ V   M   GF  S  T+  ++  L + + +E   GL++ M
Sbjct: 192 SYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEM 251

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           + + + P++  +   +      G +     +LK+M++E  G D  TY  L+   C A ++
Sbjct: 252 ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKL 311

Query: 225 EEAFVLLRRM 234
           + A  +  +M
Sbjct: 312 DCAKEVFAKM 321



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T + +L  L    ++EE   + ++M++  +  D   Y  +      KG L      L+KM
Sbjct: 122 TCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKM 181

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            E     +A +Y+ L+    ++    EA  + RRM+ DG      TY+ +M  L
Sbjct: 182 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGL 235


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LIG  C   K+D AL   D M E G  ++  T++ ++  L    R  EA+ L
Sbjct: 142 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 201

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    ++PD+  YN L+  +C +GN+     + + M    + A   TY +L+    +
Sbjct: 202 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSK 261

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+E   L    V  G       Y  ++ +    G   +A + +     + I  D   
Sbjct: 262 KGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVT 321

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L   L  L R +EA  ++ EM KR ++
Sbjct: 322 YNTLMRGLCLLGRVDEARKLIDEMTKRGIQ 351



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P +  Y T+I   CK+ ++DEA++V D ++ +G     A+ ++ ++       +++ A  
Sbjct: 106 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALL 165

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M E  V+  +  YN L+ A    G  T    ++++M  + L  D  TY+ L+ G C
Sbjct: 166 YRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHC 225

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G V++A  +   M   G      TY  ++ AL + G   +  K       R I+ D  
Sbjct: 226 KEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLV 285

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
           L+ +L +        + A  I+ EM K+
Sbjct: 286 LYNALINSHSTSGNIDRAFEIMGEMEKK 313



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 75/148 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI        ID A  ++  M +       +T++ ++  L    R++EA  L++ M 
Sbjct: 287 YNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMT 346

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  + PDL  YN L++ Y  KG++     +  +M  +       TY+AL+ G C+ G+ +
Sbjct: 347 KRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 406

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +A  +++ MV++G +   STY  ++  L
Sbjct: 407 DAENMVKEMVENGITPDDSTYISLIEGL 434



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 74/161 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y +LI  L K  ++ E  ++ D     G     + ++ +++  +    ++ A+ +M  M+
Sbjct: 252 YTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEME 311

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + R++PD   YN L+   C  G +     ++ +M +  +  D  TY+ L+ G    G V+
Sbjct: 312 KKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVK 371

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A  +   M++ G +    TY  ++  L + G    A   V
Sbjct: 372 DALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 412


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  L     +++A  +++ M   GF  S++T   +L   ++ +R++    +
Sbjct: 622 PNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDI 681

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M    +  D+T YN LL   C+ G     + VL++M    +  D  T++AL+LG C+
Sbjct: 682 HEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCK 741

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +  ++ AF    +M+    S   +T+  ++G L  +G   +A
Sbjct: 742 SSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEA 783



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++TLI   C++     AL V D M   G  +  + ++ +++   R  +++ A G++++M
Sbjct: 171 GWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMM 230

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           KE  V P++  Y   +  YC    +     + + M    +  D  T  ALV G CR GR 
Sbjct: 231 KEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRF 290

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            EA+ L R M   G    + TY  ++ +L + G
Sbjct: 291 SEAYALFREMDKVGAVPNHVTYCTLIDSLAKAG 323



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 2/206 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  LCK   +DEA +V+  M E     + +TF  +++   +   +++A     +MK
Sbjct: 382 YTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMK 441

Query: 166 EIRVSPDLTAYNYLLTAYC-FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           E  ++P++  Y  L+  +  F+G   A   V   M  E +  +    D+LV G  + G++
Sbjct: 442 ERGINPNVVTYGTLIDGFFKFQGQDAALE-VYHDMLCEGVEVNKFIVDSLVNGLRQNGKI 500

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           EEA  L +     G S+ +  Y  ++  L + G    A KF      R++  D  ++   
Sbjct: 501 EEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVF 560

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
            + L  L +F EA  IL EM    LK
Sbjct: 561 INCLCILGKFKEAKSILTEMRNMGLK 586



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 1/213 (0%)

Query: 98  KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +G P     Y+TL+   C+  ++D A  V+D+M E G   +  T+ P +    R K +EE
Sbjct: 198 QGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEE 257

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+ L E M    V  D+   + L+   C  G  +    + ++M++     +  TY  L+ 
Sbjct: 258 AFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLID 317

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
              +AGR +E   LL  MV  G  +   TY  +M  L + G   +    +      ++ L
Sbjct: 318 SLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSL 377

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +   +  L   L      +EA  +L EM ++ +
Sbjct: 378 NGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSI 410



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 8/216 (3%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           +A L    P   AY+ L   L  L     A  V+  M + G     +T + +L+ L R  
Sbjct: 93  IALLRSSRPTTVAYNIL---LAALSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNG 149

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
           +++ A  L +    I  + D+  +N L+  YC  G+  A   V  +M  + L  D   Y+
Sbjct: 150 QVDAAAALADRGGGIH-ALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYN 208

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCG 270
            LV G CRAG+V+ A  +L  M + G     +TY   +    R     +A      MV  
Sbjct: 209 TLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRN 268

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           G  + LD     +L + L    RF+EA  + +EM+K
Sbjct: 269 G--VLLDVVTLSALVAGLCRDGRFSEAYALFREMDK 302



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 68/159 (42%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+TL+  LC      +A  V++ M   G     ITF+ ++    +   ++ A+     
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    +SP++  +N LL      G +     VL +ME+  L  +  TYD LV G  +   
Sbjct: 755 MLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSN 814

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             EA  L   MV  G     STY  ++    + G   QA
Sbjct: 815 KVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQA 853



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 56/128 (43%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           D+L+  L +  KI+EA+ +    +  G  L  + +  ++  L +   M  A+   + + +
Sbjct: 488 DSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + PD   YN  +   C  G       +L +M    L  D  TY+ +++  CR G   +
Sbjct: 548 RNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAK 607

Query: 227 AFVLLRRM 234
           A  LL  M
Sbjct: 608 ALKLLHEM 615



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI  L K   +  A +    + +      A+ ++  ++ L    + +EA  ++  M+
Sbjct: 522 YTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMR 581

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            + + PD + YN ++ ++C KG       +L +M+   +  +  TY+ LV G    G VE
Sbjct: 582 NMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVE 641

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           +A  LL  MV  G S    T+  V+ A
Sbjct: 642 KAKYLLNEMVSAGFSPSSLTHRRVLQA 668



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 3/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y   I   C+ K ++EA  + + M   G  L  +T   +++ L R  R  EA+ L
Sbjct: 237 PNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYAL 296

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M ++   P+   Y  L+ +    G       +L +M    +  D  TY AL+    +
Sbjct: 297 FREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGK 356

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+ +E    LR  + D  S+   TY  ++ AL +     +A + ++    + I  +   
Sbjct: 357 QGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVT 416

Query: 281 FGSLGSKLIG---LERFNEANFILKE 303
           F S+ +  +    L++  E   ++KE
Sbjct: 417 FSSVINGFVKRGLLDKATEYKRMMKE 442



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + ++TL+G L  + +I EA  V+  M + G   + +T+  +++   +     EA  L
Sbjct: 762 PNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRL 821

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      P ++ YN L++ +   G +T    + K M++  +   + TYD LV G  R
Sbjct: 822 YCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSR 881

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
                E    L+ M + G S    T + +  A  + G   QA + +
Sbjct: 882 IRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLL 927



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 1/213 (0%)

Query: 96  LDKGFPRKSAYDTLIGRLC-KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +  GF   S     + + C + +++D  L + + M   G       ++ +L VL      
Sbjct: 651 VSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMT 710

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  ++E M    ++PD   +N L+  +C   +L        +M  + +  +  T++ L
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTL 770

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    GR+ EA  +L  M   G      TY  ++    +     +A++      G+  
Sbjct: 771 LGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGF 830

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                 + +L S         +A  + K+M KR
Sbjct: 831 VPKVSTYNALISDFTKAGMMTQAKELFKDMQKR 863



 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 2/177 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI  L K  +  E L ++  M   G  +  +T+  ++  L +  + +E    
Sbjct: 307 PNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDT 366

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +       +S +   Y  L+ A C   N+     VL +MEE+ +  +  T+ +++ G  +
Sbjct: 367 LRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVK 426

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIK 275
            G +++A    R M + G +    TY  ++    +      A++    M+C G ++ 
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVN 483



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 2/165 (1%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN +     S+  + +    L  ++K    P    YD L+    K     EA+R+   M
Sbjct: 766 TFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEM 825

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF     T++ ++S  T+   M +A  L + M++  V P    Y+ L++ +    N 
Sbjct: 826 VGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNG 885

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           T     LK M+E+       T   +     + G   +A  LL+ +
Sbjct: 886 TEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 71/185 (38%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+  I  LC L K  EA  ++  M   G      T++ ++    R     +A  
Sbjct: 551 LPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALK 610

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  MK   + P+L  YN L+      G +     +L +M        + T+  ++    
Sbjct: 611 LLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACS 670

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           ++ R++    +   M++ G     + Y  ++  L   G   +A   +    G  I  DT 
Sbjct: 671 QSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTI 730

Query: 280 LFGSL 284
            F +L
Sbjct: 731 TFNAL 735



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 60/146 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI   CK   +D A      M       +  TF+ +L  L    R+ EA  +
Sbjct: 727 PDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTV 786

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  + P+   Y+ L+T +  + N      +  +M  +       TY+AL+    +
Sbjct: 787 LIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTK 846

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
           AG + +A  L + M   G      TY
Sbjct: 847 AGMMTQAKELFKDMQKRGVHPTSCTY 872


>gi|297599210|ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group]
 gi|47497324|dbj|BAD19365.1| fertility restorer homologue A-like [Oryza sativa Japonica Group]
 gi|125582052|gb|EAZ22983.1| hypothetical protein OsJ_06677 [Oryza sativa Japonica Group]
 gi|255670892|dbj|BAF08737.2| Os02g0468500 [Oryza sativa Japonica Group]
          Length = 506

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P +  Y+ LIG  C+L ++++A  +   M +     +A  +  +++   +   +E 
Sbjct: 260 DRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLINGHCKKGEVEA 319

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A G+ E M    V PD  +Y  L+   C  GN+     ++++M ++   AD  TY+ L+ 
Sbjct: 320 ARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLE 379

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           G C+  R+ EA  LL ++  +G  +  ++Y  VM  L   G   +A   + +  GR
Sbjct: 380 GLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKAAGLLGMMLGR 435



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 4/215 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEEA 157
           P    Y+ LI    K   +  A +V D M +        S +T+  ++  L RG +M+EA
Sbjct: 190 PNTCIYNILIKHYVKKGDLGTAFQVFDEMRKMNCADVRPSLVTYSTLIGGLCRGAQMKEA 249

Query: 158 WGLMEVMKEI-RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           + L E M E  R+ PD   YN L+  +C  G +     +   M + +   +A  Y  L+ 
Sbjct: 250 FELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLIN 309

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+ G VE A  +   M+  G      +Y  ++G L R G   + +  V     +  K 
Sbjct: 310 GHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKA 369

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           D   +  L   L    R  EA  +L+++    +++
Sbjct: 370 DVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQL 404



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK  +++ A  V + M   G    A+++  ++  L R   ++E   L
Sbjct: 299 PNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINL 358

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +     D+  YN LL   C    +     +L+K+  E +  +  +Y  ++   C 
Sbjct: 359 VQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCS 418

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G +E+A  LL  M+  G    Y+    ++  L  +G  + A
Sbjct: 419 CGEMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDA 460



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 94/214 (43%), Gaps = 12/214 (5%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLS 84
           EP +  Y  L+N    + ++E  R +  +  R      A ++  +        N +  ++
Sbjct: 298 EPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGIN 357

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           ++ ++ +   + D        Y+ L+  LCK ++I EA+ +++ +   G  L+  ++  +
Sbjct: 358 LVQEMWQKGCKADV-----VTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIV 412

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++ L     ME+A GL+ +M      P   A N LL   C  G ++  +  L  + +   
Sbjct: 413 MNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYGLVDTGF 472

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             +AR +  L+    R  ++  +  LL  ++ +G
Sbjct: 473 MPEARCWARLIESVFRERKLRRSIELLDVLIAEG 506


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 101/210 (48%), Gaps = 3/210 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P+   Y  L+ A   ++  +++  ++++   +     +  FN + N  +    +     
Sbjct: 45  KPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAME 104

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMA-EGGFGLSAITFHPILSVL 148
           T  ++ +    P  S Y+TLI       K +E+++++++M+ EG    +  T++ ++   
Sbjct: 105 TFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAW 164

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
              KR+ EAW ++  M    + PD+  YN + TAY  KG L    GV+ +M+   +  + 
Sbjct: 165 CNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNE 224

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           RT   ++ G C+ GR+ EA     RM + G
Sbjct: 225 RTCGIIMSGYCKEGRIREALRFAYRMKELG 254



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 10/151 (6%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           D CRT+    K          L+  L +  K  EA  +   + EGG   S I++  +L+ 
Sbjct: 8   DSCRTVRSRTK----------LMNFLVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAA 57

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           LT  KR +  + ++  ++E  ++PD   +N ++ A+   GN+ +      KM+E  +   
Sbjct: 58  LTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPT 117

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             TY+ L+ G   AG+ EE+  LL  M  +G
Sbjct: 118 TSTYNTLIKGYGIAGKPEESVKLLELMSQEG 148



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 1/185 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ +I    +   ++ A+     M E G   +  T++ ++       + EE+  L
Sbjct: 81  PDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKL 140

Query: 161 MEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +E+M +E  V P+L  YN L+ A+C K  +T    V+ KM    +  D  TY+ +     
Sbjct: 141 LELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYA 200

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G +++A  ++  M ++G      T   +M    + G   +A++F        I  +  
Sbjct: 201 QKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLV 260

Query: 280 LFGSL 284
           +F SL
Sbjct: 261 IFNSL 265



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 57/297 (19%), Positives = 109/297 (36%), Gaps = 62/297 (20%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSV 85
           P S +++ ++NA     ++E+      K   +    T +T+N +          E S+ +
Sbjct: 81  PDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKL 140

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L      +++     P    Y+ L+   C  K+I EA  VV  M   G     +T++ I 
Sbjct: 141 L----ELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIA 196

Query: 146 SVLTRGKRMEEAWG-LMEV----------------------------------MKEIRVS 170
           +   +   +++A G ++E+                                  MKE+ + 
Sbjct: 197 TAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIH 256

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P+L  +N L+  +    +      VL  MEE  +  D  T+  ++     AG +E+   +
Sbjct: 257 PNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREI 316

Query: 231 LRRMVDDG-------QSVLYSTYA---------HVMGALLRLGYYAQAVKFVMVCGG 271
              MV  G        S+L   Y           ++  +++ G+    V F  V  G
Sbjct: 317 FDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISG 373



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +  GF P    + T+I   C   K+D A+RV D M + G   +  TF  ++      ++ 
Sbjct: 356 IKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQP 415

Query: 155 EEAWGLMEVMKEIRVSPD 172
            +A  ++++M E  V P+
Sbjct: 416 WKAEEILQIMTEFEVQPE 433



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 71/162 (43%), Gaps = 1/162 (0%)

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +++ L    + +EA  +   + E    P L +Y  LL A   +    +   ++ ++EE  
Sbjct: 19  LMNFLVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENG 78

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           +  D+  ++A++     +G +E A     +M ++G     STY  ++      G   ++V
Sbjct: 79  MNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESV 138

Query: 264 KFV-MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           K + ++    ++K +   +  L       +R  EA  ++ +M
Sbjct: 139 KLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKM 180


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 2/209 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +PT   +  L+N      +      L +      C     T+N I N    +   +    
Sbjct: 160 QPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAG 219

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L ++++    P    Y TLI  LC+ + ++EAL +   M   G      T+  ++  L 
Sbjct: 220 LLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLC 279

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  R +EA  L+  M  + + PD+  +N L+  +C +G ++   GVLK M E  +  +  
Sbjct: 280 KFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVV 339

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY +L+ G      V EA  L   M+  G
Sbjct: 340 TYSSLMYGYSLWTDVVEARKLFHVMITKG 368



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+   CK  K+ EAL V+  M E G   + +T+  ++   +    + EA  L
Sbjct: 301 PDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKL 360

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             VM      P++ +YN L+  YC    +     +  +M  + L  +  +Y+ L+ G C+
Sbjct: 361 FHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQ 420

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G++ EA  L R M  +G      TY+ ++    + GY  +A + 
Sbjct: 421 LGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRL 465



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 91/209 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LCK+ +   A  ++  M E G   + +T+  ++  L R + + EA  +
Sbjct: 196 PDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDI 255

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK   +SPD+  Y  L+   C        S +L +M    +  D  T++ LV   C+
Sbjct: 256 FSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCK 315

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V EA  +L+ M + G      TY+ +M          +A K   V   +  K +   
Sbjct: 316 EGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFS 375

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L +     +R +EA  +  EM  + L
Sbjct: 376 YNILINGYCKAKRIDEAMQLFNEMIHQGL 404



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 103/256 (40%), Gaps = 1/256 (0%)

Query: 51  LETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLI 110
           L +  ++L+++   C    A   + I        V+  L + +  +    P        +
Sbjct: 77  LASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLS-PNIYTLSIFM 135

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
              C+L+++D    V+  + + G   + +TF  +++ L +     +A  L + M      
Sbjct: 136 NCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQ 195

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           PD+  YN ++   C  G   A +G+LKKMEE     +  TY  L+   CR   V EA  +
Sbjct: 196 PDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDI 255

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG 290
              M   G S    TY  ++  L +   + +A   +      +I  D   F  L      
Sbjct: 256 FSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCK 315

Query: 291 LERFNEANFILKEMNK 306
             + +EA  +LK M +
Sbjct: 316 EGKVSEALGVLKTMTE 331



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 75/164 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI   CK K+IDEA+++ + M   G   + ++++ ++    +  ++ EA  L
Sbjct: 371 PNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDL 430

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PDL  Y+ LL  +C +G L     + + M+   L  +   Y  LV   C+
Sbjct: 431 FRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCK 490

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +G  ++A  L   +   G       Y  ++  L + G   +A++
Sbjct: 491 SGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALE 534



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 104/251 (41%), Gaps = 17/251 (6%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + +++ V ++ T+ G    EP    Y  L+       D+   R L +      C     +
Sbjct: 319 VSEALGVLKTMTEMGV---EPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFS 375

Query: 73  FNFITN-------TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALR 124
           +N + N        + ++ + +++      + +G  P   +Y+TLI   C+L K+ EA  
Sbjct: 376 YNILINGYCKAKRIDEAMQLFNEM------IHQGLTPNNVSYNTLIHGFCQLGKLREAQD 429

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +   M   G      T+  +L    +   + +A+ L   M+   + P+L  Y  L+ A C
Sbjct: 430 LFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMC 489

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
             GN      +  ++  + L    + Y  ++ G C+ G ++EA    R M  DG      
Sbjct: 490 KSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEI 549

Query: 245 TYAHVMGALLR 255
           +Y  ++  LL+
Sbjct: 550 SYNVIIRGLLQ 560



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 87/213 (40%), Gaps = 1/213 (0%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKI-DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           K  P    +  L+  + K+ +  D  + +   M   G   +  T    ++   + +R++ 
Sbjct: 87  KPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDL 146

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
            + ++  + ++ + P +  +  L+   C  G       +   M  +    D  TY+ ++ 
Sbjct: 147 GFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIIN 206

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C+ G    A  LL++M + G      TY+ ++ +L R     +A+        + I  
Sbjct: 207 GLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISP 266

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           D   + SL   L    R+ EA+ +L EM   ++
Sbjct: 267 DIFTYTSLIQGLCKFSRWKEASALLNEMTSLNI 299


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 99/204 (48%), Gaps = 2/204 (0%)

Query: 96  LDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           ++KG PR     ++++I  LCK  ++ +A  + D++ + G     ITF  ++       +
Sbjct: 537 INKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGK 596

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M++A+ +++ M+ + V  D+  Y+ LL  Y   G +     + ++M+ + +  +  TY  
Sbjct: 597 MDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGI 656

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++ G  RAGR   A      M++ G +V  S Y  ++G L R     +A+      G  +
Sbjct: 657 MLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMN 716

Query: 274 IKLDTELFGSLGSKLIGLERFNEA 297
           +K    +  ++ + +  ++R  EA
Sbjct: 717 VKFSITILNTMINAMYKVQRKEEA 740



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I     L ++ EA ++   M   G   + +  +  L+ L +  R +EA  +
Sbjct: 333 PDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEI 392

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      PD+ +Y  LL  Y  +G      G+   M+   + AD R ++ L+    +
Sbjct: 393 FDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAK 452

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G V++A ++   M   G S    TY+ V+ A  R+G    A++       R I+ +T +
Sbjct: 453 RGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAV 512

Query: 281 FGSL 284
           + S+
Sbjct: 513 YHSI 516



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/309 (19%), Positives = 127/309 (41%), Gaps = 18/309 (5%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           + RK+ ++ LIP  V+                +A   D + A GH+ D+ +   LL+  A
Sbjct: 357 MFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYA 416

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122
            +  F  A+      N+  S  + +D CR              ++ LI    K   +D+A
Sbjct: 417 SEGWF--ADMIGLF-NSMKSNGIAAD-CRV-------------FNILIHAYAKRGMVDDA 459

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           + +   M + G     +T+  ++S  +R  R+ +A      M    + P+   Y+ ++  
Sbjct: 460 MLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQG 519

Query: 183 YCFKGNLTATSGVLKKMEEEKLG-ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
           +C  G L     ++ +M  + +   D   +++++   C+ GRV +A  +   + D G+  
Sbjct: 520 FCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERP 579

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
              T+  ++     +G   +A K +       ++ D   + +L        R N+   + 
Sbjct: 580 DVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLF 639

Query: 302 KEMNKRDLK 310
           +EM ++ +K
Sbjct: 640 REMQRKGVK 648



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 107/264 (40%), Gaps = 4/264 (1%)

Query: 48  ERDLETVRYLLNKRARDCCFNTANTFNFITN--TENSLSVLS-DLCRTLARLDKGF-PRK 103
            R  E V  LL++ +   C     +++ I     +NS+S  + DL + +A+      P  
Sbjct: 206 NRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNV 265

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
            AY+T+I    K  +  +A  +   M   G     +T++ I+  L + + M++A  ++  
Sbjct: 266 VAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQ 325

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M      PD   YN ++  Y   G L   + + +KM+   L  +    ++ +   C+ GR
Sbjct: 326 MTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGR 385

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
            +EA  +   M   G      +Y  ++      G++A  +          I  D  +F  
Sbjct: 386 SKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNI 445

Query: 284 LGSKLIGLERFNEANFILKEMNKR 307
           L          ++A  I  EM ++
Sbjct: 446 LIHAYAKRGMVDDAMLIFTEMQQQ 469



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 100/245 (40%), Gaps = 5/245 (2%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           T+ G  PD  T   Y+ +++A    R ++    +L +   +       T+N + +   +L
Sbjct: 292 TRQGVKPDVVT---YNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATL 348

Query: 84  SVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
             L +  +   ++  +G  P     ++ +  LCK  +  EA  + D M   G     +++
Sbjct: 349 GRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSY 408

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             +L          +  GL   MK   ++ D   +N L+ AY  +G +     +  +M++
Sbjct: 409 CTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQ 468

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           + +  D  TY  ++    R GR+ +A     +MV  G     + Y  ++      G   +
Sbjct: 469 QGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVK 528

Query: 262 AVKFV 266
           A + V
Sbjct: 529 AKELV 533



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 15/247 (6%)

Query: 79  TENSLSVLSDLCRTLARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVV 126
           T ++ S+L D C    R D G               +    TL+  LC   + +EA+ V+
Sbjct: 156 TVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVL 215

Query: 127 -DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI--RVSPDLTAYNYLLTAY 183
              M+E G   +  ++  IL  L      + A  L ++M +     SP++ AYN ++  +
Sbjct: 216 LHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGF 275

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
             +G       +  +M  + +  D  TY+ ++   C+A  +++A ++LR+M  +G     
Sbjct: 276 FKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDT 335

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++     LG   +A K       R +  +  +  S  + L    R  EA  I   
Sbjct: 336 VTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDS 395

Query: 304 MNKRDLK 310
           M  +  K
Sbjct: 396 MTAKGHK 402


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 2/217 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  +  L++A   + D ET+  L  +         A T+N I N       L     
Sbjct: 218 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 277

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            +  +      P    Y TLI   CK +++D A+ +   M   G GL  +T+  ++S L+
Sbjct: 278 IVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLS 337

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  R  +A  ++  M E  + PD T Y  ++ A+C KG++     +LK+M+ +       
Sbjct: 338 KAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVV 397

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           TY+ ++ G C+ G+++ A +LL  M++ G S    TY
Sbjct: 398 TYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITY 434



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI   CK    +  L +   M E G    A+T++ I++ L R + ++ A G+
Sbjct: 219 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 278

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   + PD   Y  L+  YC +  L     + + M  E +G D  TY AL+ G  +
Sbjct: 279 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSK 338

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           AGR  +A  +L  M++ G     +TY  V+ A  R G
Sbjct: 339 AGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKG 375



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC++ +I++A  V + M   G   +A+ F  ++    +    E    L
Sbjct: 184 PDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLEL 243

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+E  V PD   YN ++   C   +L + SG++ +M    L  D  TY  L+ G C+
Sbjct: 244 HREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCK 303

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
              ++ A  + + MV +G  +   TY  ++  L + G  A A + +
Sbjct: 304 EEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVL 349



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 4/208 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +++T+I  +C+   +D A  +   M+E G      T+  ++  L R  R+E+A G+ E M
Sbjct: 153 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 212

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               + P+   +  L+ A+C KG+      + ++M E  +  DA TY+A+V G CRA  +
Sbjct: 213 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 272

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY--YAQAVKFVMVCGGRDIKLDTELFG 282
           + A  ++  M   G      TY  ++    +      A  +K  MV  G  + LD   + 
Sbjct: 273 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEG--VGLDEVTYT 330

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDLK 310
           +L S L    R  +A  +L EM +  L+
Sbjct: 331 ALISGLSKAGRSADAERVLGEMMEAGLE 358



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 1/193 (0%)

Query: 93  LARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD G P ++  ++ L+  L +L ++  A  V D M   G   + ++F+ ++S + R 
Sbjct: 105 LQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRA 164

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             ++ A  L   M E  V+PD+  Y  L+   C  G +    GV +KM    +  +A  +
Sbjct: 165 GDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVF 224

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
             L+   C+ G  E    L R M + G      TY  ++  L R      A   V+    
Sbjct: 225 TILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRS 284

Query: 272 RDIKLDTELFGSL 284
             ++ DT  + +L
Sbjct: 285 AGLRPDTVTYTTL 297



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 77/180 (42%)

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           + G    A  F+ ++  L R   +  A  + + M+   V   + ++N +++  C  G+L 
Sbjct: 109 DAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLD 168

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               + ++M E  +  D  TY AL+ G CR GR+E+A  +  +M   G       +  ++
Sbjct: 169 GAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILI 228

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            A  + G     ++       R ++ D   + ++ + L        A+ I+ EM    L+
Sbjct: 229 DAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLR 288


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 7/223 (3%)

Query: 56  YLLNKRARDCCFNTAN-TFNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIG 111
           YLL K+ R    +    T+N + N    E  + V + +   +++ D   P    Y+ LIG
Sbjct: 323 YLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLS-PNCVTYNALIG 381

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
             C +   +EALR++D M   G  L+ +T+  +L+ L + ++ E A  L+E M+   +  
Sbjct: 382 GHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVV 441

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
              AY  L+   C  G L     ++  M ++ +  D  TY +L+ G CR G ++ A  ++
Sbjct: 442 GHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEII 501

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGR 272
            RM   G  +    Y+ ++    + G   +A+K   VM C G 
Sbjct: 502 CRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGH 544



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 7/194 (3%)

Query: 66  CFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDE 121
           C N   TFN + N    E +L    +L + +   + GF P    Y+TL+   CK  +   
Sbjct: 230 CPNVG-TFNILINGLCVEGNLKKAGNLLKQME--ENGFVPTIVTYNTLLNWYCKKGRYKA 286

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A+ ++D M   G      T++  +  L    R  +A+ L++ M++  +SP+   YN L+ 
Sbjct: 287 AIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLIN 346

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            +  +G +   + V  +M +  L  +  TY+AL+ G C  G  EEA  LL  M   G  +
Sbjct: 347 GFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRL 406

Query: 242 LYSTYAHVMGALLR 255
              TY  ++  L +
Sbjct: 407 NEVTYGTLLNGLCK 420



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 68/143 (47%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S +D LI    K   ID A+   +++   GF  S  T + IL+ + + KR E  W L   
Sbjct: 164 SVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFRE 223

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M +  + P++  +N L+   C +GNL     +LK+MEE        TY+ L+   C+ GR
Sbjct: 224 MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGR 283

Query: 224 VEEAFVLLRRMVDDGQSVLYSTY 246
            + A  L+  M+  G      TY
Sbjct: 284 YKAAIELIDYMICKGIEADVCTY 306



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 1/217 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKG  P    ++ LI  LC    + +A  ++  M E GF  + +T++ +L+   +  R +
Sbjct: 226 DKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYK 285

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L++ M    +  D+  YN  +   C          +LKKM +E +  +  TY+ L+
Sbjct: 286 AAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLI 345

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G  + G++  A  +   M     S    TY  ++G    +G + +A++ +       ++
Sbjct: 346 NGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLR 405

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
           L+   +G+L + L   E+F  A  +L+ M   D+ +G
Sbjct: 406 LNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVG 442



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 103/237 (43%), Gaps = 2/237 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
            P    Y+ L+N    E  +     + N+ ++        T+N +      +    +  R
Sbjct: 335 SPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALR 394

Query: 92  TLARLDKGFPR--KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  ++    R  +  Y TL+  LCK +K + A R+++ M      +  I +  ++  L 
Sbjct: 395 LLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLC 454

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   ++EA  L+  M +  V+PD+  Y+ L+  +C  GN+ +   ++ +M    L  +  
Sbjct: 455 KNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKI 514

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            Y  L+   C+ G V EA  +   M  +G    + T   ++ +L R G   +A KF+
Sbjct: 515 IYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFL 571



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 10/229 (4%)

Query: 67   FNTANTFNFITNTENSLSVLSDLCRTLAR-LDKG-FPRKSAYDTLIGRLCKLKKIDEALR 124
            F   +T+N I N  N  S   +    L   L+ G  P+ + Y TLI  +C++  I  A +
Sbjct: 896  FPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFK 955

Query: 125  VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
            + D M   GFG   +    ++  L    + E+A  +++ M  +R+ P +  +  L+  +C
Sbjct: 956  LKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFC 1015

Query: 185  FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
                +     +   ME   L  D   Y+ L++G C  G    AF L   M         +
Sbjct: 1016 RDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNIT 1075

Query: 245  TYAHVMGALLRLGYYAQAVKF--------VMVCGGRDIKLDTELFGSLG 285
            TYA ++ A+       Q  K         ++  GG    LD EL  ++G
Sbjct: 1076 TYAVLVDAISAANNLIQGEKLLTDLQERGLISWGGSTQHLDKELTVAMG 1124



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 82/210 (39%), Gaps = 21/210 (10%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF 100
           ++N  GH  D  T   L++   RD     A  F               LC  ++R+    
Sbjct: 538 VMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKF---------------LCH-MSRIGL-V 580

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    YD +I     +     A    D M + G   S  T+  +L  L +G  + EA   
Sbjct: 581 PNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKF 640

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +  I  + D   YN LL   C  GNL     +  KM +  +  D+ TY +L+ G CR
Sbjct: 641 LNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCR 700

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
            G+   A  L    +  G+  L+    HVM
Sbjct: 701 KGKAVTAVCLFGTAM--GRGTLFPN--HVM 726



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 90/237 (37%), Gaps = 40/237 (16%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           N F  + N +++  ++  + R+   L+K       Y TLI   C+   + EA++V  +M 
Sbjct: 486 NGFCRVGNIKSAKEIICRMYRSGLVLNK-----IIYSTLIYNFCQHGNVTEAMKVYAVMN 540

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY------- 183
             G G    T + ++S L R  ++ EA   +  M  I + P+   Y+ ++  Y       
Sbjct: 541 CNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPL 600

Query: 184 ----------------------------CFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
                                       C  GNL      L ++       D+  Y+ L+
Sbjct: 601 NAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLL 660

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
              C++G + EA  L  +MV +       TY+ ++  L R G    AV       GR
Sbjct: 661 AETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGR 717



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 67/166 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   C++  I  A  ++  M   G  L+ I +  ++    +   + EA  +
Sbjct: 476 PDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKV 535

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             VM       D    N L+++ C  G L      L  M    L  ++ TYD ++ G   
Sbjct: 536 YAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGS 595

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G    AF     M+  GQ   + TY  ++  L + G   +A KF+
Sbjct: 596 IGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFL 641



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 3/278 (1%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-FITNTENSLSVLSD 88
           P    S  Y+ L+       +L     L +K  ++     + T++  +T        ++ 
Sbjct: 648 PGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTA 707

Query: 89  LCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           +C     + +G  FP    Y  L+  L K      A    + M + G     + F+ I+ 
Sbjct: 708 VCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIID 767

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
             +R  +M +A      M+   V P+L  YN LL  +  K  L     +   M  E +  
Sbjct: 768 SCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFP 827

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D  T+ +L+LG  ++G  +    LL +M+ +G      T+  ++      G   +A   V
Sbjct: 828 DKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLV 887

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                  +  D + +  + + L     F E+  +L EM
Sbjct: 888 NFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEM 925



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 4/156 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP K  + +LI  L K    D  ++++  M   G      TF+ +++  +   +M +A+ 
Sbjct: 826 FPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFD 885

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M  + V PD   YN++      K     ++ VL +M E  +      Y  L+ G C
Sbjct: 886 LVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMC 945

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           R G ++ AF    ++ D+ +++ + ++     A++R
Sbjct: 946 RVGDIQGAF----KLKDEMEALGFGSHEVAESAMVR 977



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 6/207 (2%)

Query: 106  YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
            ++ LI +  +  K+ +A  +V+ M   G      T++ I + L +     E+  ++  M 
Sbjct: 867  FNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEML 926

Query: 166  EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            E  V P    Y  L+   C  G++     +  +ME    G+      A+V G    G+ E
Sbjct: 927  ENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTE 986

Query: 226  EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VM-VCGGRDIKLDTELFG 282
            +A ++L  M+        +T+  +M    R    A+A+K   VM +CG   +KLD   + 
Sbjct: 987  DAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCG---LKLDVVAYN 1043

Query: 283  SLGSKLIGLERFNEANFILKEMNKRDL 309
             L   +        A  + +EM  RDL
Sbjct: 1044 VLIMGMCANGDSAAAFELYEEMRHRDL 1070


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 98/209 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI     + ++  A  V   MA+ G       +  +++ L + K ++EA  L
Sbjct: 300 PDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSL 359

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK   + PD+  YN L+   C   +L     + K+M+E+ +  D  +Y  L+ G C+
Sbjct: 360 FEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCK 419

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+E+A  + +R++  G  +    Y  ++  L + G++ +A+        +    D   
Sbjct: 420 SGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVT 479

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F  +   L   +  ++A  IL+EM  R L
Sbjct: 480 FDIIIRALFEKDENDKAEKILREMIARGL 508



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 113/281 (40%), Gaps = 6/281 (2%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y  L+N      + + V  LL K            +N I N+     +L D C   + + 
Sbjct: 165 YGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMI 224

Query: 98  -KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
            KG  P    Y TLI   C +  + EA  +++ M       +  TF+ ++  L++  +M+
Sbjct: 225 VKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMK 284

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L+ VM +  + PD+  YN L+  Y     +     V   M +  +  D + Y  ++
Sbjct: 285 EAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMI 344

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G C+   V+EA  L   M          TY  ++  L +  +  +A+        + I+
Sbjct: 345 NGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQ 404

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLR 316
            D   +  L   L    R  +A    KE+ +R L  G+ L 
Sbjct: 405 PDVYSYTILLDGLCKSGRLEDA----KEIFQRLLAKGYHLN 441



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 121/283 (42%), Gaps = 14/283 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLL-----NKRARDCCFNTA--NTFNFITNTENSLSV 85
           P + ++++++++  + +   TV  L      N    D C  +   N F    +   + SV
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            +++      L +GF P     +TLI  LC   +I +AL   D +   GF L  +++  +
Sbjct: 115 FANI------LKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTL 168

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++ L +    +    L+  ++   V PD+  YN ++ + C    L     V  +M  + +
Sbjct: 169 INGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGI 228

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY  L+ G C  G ++EAF LL  M     +    T+  ++ AL + G   +A  
Sbjct: 229 SPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKI 288

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            + V     IK D   + SL      ++    A ++   M +R
Sbjct: 289 LLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQR 331


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 5/255 (1%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + Q++ +       G  PD  T   Y+ L+        L+     L K     C     +
Sbjct: 232 VGQAMKLFNEMRNKGCKPDVVT---YNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVIS 288

Query: 73  FNFITNTENSLSVLSDLCRTLAR-LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
            N I  +  S     D  + LA  L KG  P    ++ LI  LC+   + +AL V+++M 
Sbjct: 289 HNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMP 348

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           + G   ++ +F+P++     GK ++ A   +E+M      PD+  YN LLTA C  G + 
Sbjct: 349 KHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVD 408

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               +L ++  +       +Y+ ++ G  + G+ E A  LL  M   G      T   V+
Sbjct: 409 DAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVV 468

Query: 251 GALLRLGYYAQAVKF 265
           G L R G   +A+KF
Sbjct: 469 GGLSREGKVREAMKF 483



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 103/216 (47%), Gaps = 11/216 (5%)

Query: 54  VRYLLNK-RARD--CCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLI 110
           + Y+ NK ++ D   C      F  I  T+N+  ++  L  + A +D      ++Y+ LI
Sbjct: 102 LEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDV-----TSYNVLI 156

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
              CK  +I+EALRV+D M   G   +A T+  +L  L    ++++A  ++    + +  
Sbjct: 157 SGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCY 213

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           PD+     L+ A C +  +     +  +M  +    D  TY+ L+ G C+ GR++EA   
Sbjct: 214 PDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRF 273

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           L+++   G      ++  ++ +L   G +  A+K +
Sbjct: 274 LKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLL 309



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 115/256 (44%), Gaps = 5/256 (1%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + Q++ V     +S  +PD  T      L++A   E  +     L N+     C     T
Sbjct: 197 LKQAMQVLGRQLQSKCYPDVVTCTV---LIDATCKESGVGQAMKLFNEMRNKGCKPDVVT 253

Query: 73  FNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           +N +         L +  R L +L      P   +++ ++  LC   +  +A++++  M 
Sbjct: 254 YNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATML 313

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   S +TF+ +++ L +   + +A  ++E+M +   +P+  ++N L+  +C    + 
Sbjct: 314 RKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGID 373

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
                L+ M       D  TY+ L+   C+ G+V++A V+L ++   G S    +Y  V+
Sbjct: 374 RAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVI 433

Query: 251 GALLRLGYYAQAVKFV 266
             LL++G    AV+ +
Sbjct: 434 DGLLKVGKAELAVELL 449



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L R   +EE    +E M     SPD+ A   L+  +C  G     S ++  +EE     D
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             +Y+ L+ G C++G +EEA  +L RM   G S   +TY  V+ +L   G   QA++ +
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVL 204



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 9/196 (4%)

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           RL +  +++E  R ++ M   G     I    ++    +  R + A  +M +++E     
Sbjct: 88  RLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVI 147

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           D+T+YN L++ YC  G +     VL +M    +  +A TYDA++   C  G++++A  +L
Sbjct: 148 DVTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVL 204

Query: 232 RRMVDDGQSVLYS---TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            R +   QS  Y    T   ++ A  +     QA+K       +  K D   +  L    
Sbjct: 205 GRQL---QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGF 261

Query: 289 IGLERFNEANFILKEM 304
               R +EA   LK++
Sbjct: 262 CKGGRLDEAIRFLKKL 277



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 98/239 (41%), Gaps = 7/239 (2%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKR 61
           L+  L  K L+ +++ V     K G  P+  + +       N  G +R +E +  ++++ 
Sbjct: 327 LINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRG 386

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKI 119
               C+    T+N +         + D    L++L  KG  P   +Y+T+I  L K+ K 
Sbjct: 387 ----CYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKA 442

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           + A+ +++ M   G     IT   ++  L+R  ++ EA      +K   + P+   YN +
Sbjct: 443 ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSI 502

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +T  C     +     L  M  +       TY  L+ G    G  E+A  L   +   G
Sbjct: 503 ITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRG 561



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 74/166 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y+ L+  LCK  K+D+A+ ++  ++  G   S I+++ ++  L +  + E A  
Sbjct: 388 YPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVE 447

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+E M    + PDL     ++     +G +         ++   +  +A  Y++++ G C
Sbjct: 448 LLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLC 507

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           ++ +   A   L  MV  G     +TY  ++  +   G    A K 
Sbjct: 508 KSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKL 553


>gi|255660932|gb|ACU25635.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 484

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 12/185 (6%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI     + ++D+ALR+V+ M   G   +AIT+  +L  L   ++M EA  +
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKANAITYSTLLPGLCNAEKMSEARSI 277

Query: 161 MEVMKEIRVSP-DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ M +  ++P D + +  L++  C  GNL A + VLK M    +  +A  Y  L+   C
Sbjct: 278 LKEMVDKYIAPTDNSIFMRLISGQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYC 337

Query: 220 RAGRVEEAFVLLRRMVDDG-----QSVLY---STYAHVMGALLRLGYYAQA---VKFVMV 268
           +AG+ ++A  LL ++++       QS L+   S Y  ++G L   G  A+A   V+ +M 
Sbjct: 338 KAGQYDQAVKLLDKLIEKDIILRPQSTLHMESSAYNPLIGYLCNNGQTAKAEALVRQLMK 397

Query: 269 CGGRD 273
            G +D
Sbjct: 398 LGVQD 402



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++ +I       K++ A R  + M         IT++ +++   R K+MEEA   
Sbjct: 148 PTRHTFNIMIWGFFLSGKVETANRFFEDMKNREITPDVITYNTMINGYYRVKKMEEAEKY 207

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK   + P +  Y  L+  Y     +     ++++M+   + A+A TY  L+ G C 
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKANAITYSTLLPGLCN 267

Query: 221 AGRVEEAFVLLRRMVD 236
           A ++ EA  +L+ MVD
Sbjct: 268 AEKMSEARSILKEMVD 283



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 77/186 (41%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           + E++++   M E G   +  ++  +  V++R  R   A      M    + P    +N 
Sbjct: 96  VQESVKLFQKMDELGVERTIKSYDALFKVISRRGRYMMAKRYFNKMLSEGIEPTRHTFNI 155

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           ++  +   G +   +   + M+  ++  D  TY+ ++ G  R  ++EEA      M    
Sbjct: 156 MIWGFFLSGKVETANRFFEDMKNREITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
                 TY  ++   + +     A++ V    G  IK +   + +L   L   E+ +EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKANAITYSTLLPGLCNAEKMSEAR 275

Query: 299 FILKEM 304
            ILKEM
Sbjct: 276 SILKEM 281



 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 44/239 (18%), Positives = 99/239 (41%), Gaps = 1/239 (0%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
            F+    +N +   +NS   L    R + R +     +  +  +I  L +  K++ A  +
Sbjct: 9   SFDHELVYNVLHGAKNSEHALQ-FFRWVERSNLFQHNRETHLKIIEILGRASKLNHARCI 67

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           +  M + G       +  ++     G  ++E+  L + M E+ V   + +Y+ L      
Sbjct: 68  LLDMPKKGLEWDEDMWVLMIDSYGNGGIVQESVKLFQKMDELGVERTIKSYDALFKVISR 127

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           +G          KM  E +     T++ ++ G   +G+VE A      M +   +    T
Sbjct: 128 RGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETANRFFEDMKNREITPDVIT 187

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           Y  ++    R+    +A K+ +   GR+I+     + +L    + +++ ++A  +++EM
Sbjct: 188 YNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEM 246



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 3/144 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +YD L   + +  +   A R  + M   G   +  TF+ ++       ++E A    E M
Sbjct: 117 SYDALFKVISRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETANRFFEDM 176

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K   ++PD+  YN ++  Y     +        +M+   +     TY  L+ G     +V
Sbjct: 177 KNREITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 225 EEAFVLLRRMVDDG---QSVLYST 245
           ++A  L+  M   G    ++ YST
Sbjct: 237 DDALRLVEEMKGYGIKANAITYST 260


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 92/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   C +  + EA  +++ M          TF+ ++  L +  +++EA  L
Sbjct: 266 PNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISL 325

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK   + P++  Y  L+   C   +L     + KKM+E+ +  D  +Y  L+   C+
Sbjct: 326 FEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCK 385

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+E A    + ++  G  +   TY  ++  L + G +   +       G+    D   
Sbjct: 386 GGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAIT 445

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F ++   L   +  ++A   L+EM  R L
Sbjct: 446 FKTIICALFEKDENDKAEKFLREMIARGL 474



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 2/166 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK K++ +A  +   M   G   +  T++ ++        ++EA+ L
Sbjct: 231 PDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSL 290

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK   ++PD+  +N L+ A   +G +     + ++M+ + +  +  TY +L+ G C+
Sbjct: 291 LNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCK 350

Query: 221 AGRVEEAFVLLRRMVDDG-QSVLYSTYAHVMGALLRLGYYAQAVKF 265
              +E A  L ++M + G Q  +YS Y  ++ AL + G    A +F
Sbjct: 351 NHHLERAIALCKKMKEQGIQPDVYS-YTILLDALCKGGRLENAKQF 395



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           + +Y TLI  LCK  +     R++  +         + +  I+  L + KR+ +A  L  
Sbjct: 198 QVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYS 257

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M    +SP++  YN L+  +C  GNL     +L +M+ + +  D  T++ L+    + G
Sbjct: 258 EMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEG 317

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           +++EA  L   M          TY  ++  L +  +  +A+
Sbjct: 318 KIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAI 358



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 14/221 (6%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD------CCFNT-ANTFN 74
           SF +       P + ++D+++++    +   TV  L  +   +      C  N   N F 
Sbjct: 80  SFNRMLLMRPPPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFC 139

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
            + +   + SV +++      L +G+ P     +TLI  LC   +I  AL   D +   G
Sbjct: 140 HLAHITFAFSVFANI------LKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQG 193

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
           F L  +++  +++ L +    +    L+  ++   V PD+  Y  ++   C    +    
Sbjct: 194 FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDAC 253

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            +  +M  + +  +  TY+ L+ G C  G ++EAF LL  M
Sbjct: 254 DLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEM 294



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 2/167 (1%)

Query: 140 TFH--PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           TFH   ILS L + K       L +  +   V+P+L   N L+  +C   ++T    V  
Sbjct: 93  TFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFA 152

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            + +     DA T + L+ G C  G ++ A     ++V  G  +   +Y  ++  L + G
Sbjct: 153 NILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAG 212

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                 + +    G  +K D  ++ ++   L   +R  +A  +  EM
Sbjct: 213 ETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEM 259



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 57/139 (41%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y +LI  LCK   ++ A+ +   M E G      ++  +L  L +G R+E A  
Sbjct: 335 FPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQ 394

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + +       ++  YN ++   C  G       +  KME +    DA T+  ++    
Sbjct: 395 FFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALF 454

Query: 220 RAGRVEEAFVLLRRMVDDG 238
                ++A   LR M+  G
Sbjct: 455 EKDENDKAEKFLREMIARG 473


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 11/232 (4%)

Query: 84  SVLSDLCRTLARLDKGF-----------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           +VL+ LCR    LD              P   +Y TL+  LC  ++  +A+ ++  M   
Sbjct: 83  TVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQAS 142

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G     +T+  ++  L     +++A  L+  M E  + P++  Y+ LL  YC  G     
Sbjct: 143 GVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECV 202

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           S V ++M    +  D   Y  L+   CR G+V++A  ++ +M++ G      TY  ++ +
Sbjct: 203 SKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINS 262

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           + + G   +A+        + + LD   + +L + L G+   +EA  +L+EM
Sbjct: 263 MCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEM 314



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 106/210 (50%), Gaps = 3/210 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC+  K+ +A +V+D M E G   + +T++ +++ + +   ++EA  L
Sbjct: 216 PDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSL 275

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM--EEEKLGADARTYDALVLGA 218
              M E  V+ D   YN L+T       +    G+L++M   E  +  +  T+++++ G 
Sbjct: 276 RNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGL 335

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+ GR+ +AF +   M ++G +    T+  ++G LLR+    +A++ +       ++ D+
Sbjct: 336 CKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDS 395

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRD 308
             +  L +    + + + A  +L +M +RD
Sbjct: 396 FTYSILINGFCKMWQVDRAESLLSKM-RRD 424



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ L+N+   E  ++    L N          A T+N +    + +  + +   
Sbjct: 250 EPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMG 309

Query: 92  TLARLDKGF----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            L  +  G     P    ++++I  LCK  ++ +A +V D+MAE G   + +TF+ ++  
Sbjct: 310 LLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGG 369

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L R  ++++A  LM+ M    + PD   Y+ L+  +C    +     +L KM  + +  +
Sbjct: 370 LLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPE 429

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ--SVLYSTYAH 248
              Y  L+   C  G +E+A      M  + +   V YST  H
Sbjct: 430 LVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIH 472



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 38/208 (18%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +++G  P    Y+ LI  +CK   + EA+ + + M E G  L A+T++ +++ L+    M
Sbjct: 245 MERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEM 304

Query: 155 EEAWGLMEVM--KEIRVSPDLTAYNYLLTAYCFKG---------NLTATSG--------- 194
           +EA GL+E M   E  V P++  +N ++   C  G         ++ A +G         
Sbjct: 305 DEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFN 364

Query: 195 -----------------VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
                            ++ +M    L  D+ TY  L+ G C+  +V+ A  LL +M  D
Sbjct: 365 LLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRD 424

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           G       Y  ++ AL   G   QA  F
Sbjct: 425 GIEPELVHYIPLLAALCEQGMMEQARNF 452



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 2/174 (1%)

Query: 138 AITFHPILSVLTR-GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           A++++ +L+ L R G  ++ A  L+ VM      P   +Y  L+ A C +       G+L
Sbjct: 78  AVSYNTVLAALCRQGGCLDAALFLLRVMAH-ETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           + M+   +  D  TY  L+ G C A  V++A  LLR M + G       Y+ ++    + 
Sbjct: 137 RDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKA 196

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           G +    K      GR I+ D  ++  L   L    +  +A  ++ +M +R L+
Sbjct: 197 GRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLE 250



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 8/215 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   CK  + +   +V + M+  G     + +  ++  L R  ++++A  +
Sbjct: 181 PNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQV 240

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M+ M E  + P++  YN L+ + C +G++     +   M E+ +  DA TY+ L+ G   
Sbjct: 241 MDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSG 300

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYS---TYAHVMGALLRLGYYAQA--VKFVMVCGGRDIK 275
              ++EA  LL  M+  G++++     T+  V+  L + G   QA  V+ +M   G    
Sbjct: 301 VLEMDEAMGLLEEMI-HGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACN 359

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           L T  F  L   L+ + +  +A  ++ EM    L+
Sbjct: 360 LVT--FNLLIGGLLRVHKVKKAMELMDEMASSGLE 392



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 90/208 (43%), Gaps = 4/208 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   CK+ ++D A  ++  M   G     + + P+L+ L     ME+A   
Sbjct: 393 PDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNF 452

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +     D+ AY+ ++   C   +  +    LK M +E L  D+ TY  L+     
Sbjct: 453 FDEMHK-NCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFAN 511

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +G +  A  +L++M   G     + +  ++      G   + ++ +     +DI LD+++
Sbjct: 512 SGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKI 571

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
             ++ + L+     NE   +L+ +   D
Sbjct: 572 ISTIYTCLVA---NNEGKALLQSVPGFD 596


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 5/216 (2%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           K G  PD  T   Y+ L++      ++   + +LN  +      T  ++N + N    + 
Sbjct: 308 KQGIKPDIVT---YNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIK 364

Query: 85  VLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           ++    +    +     FP    Y++LI  LCK  +I  AL ++D+M + G     IT+ 
Sbjct: 365 MVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYS 424

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            IL  L +   +++A  L+  +K+  + P++  Y  L+   C  G L     + + +  +
Sbjct: 425 SILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVK 484

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
                  TY  ++ G C  G  +EA  LL +M D+ 
Sbjct: 485 GYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNS 520



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 100/209 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ +I   CK+K +D+A+++   M       + IT++ ++  L +  R+  A  L+++M
Sbjct: 352 SYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLM 411

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +    PD+  Y+ +L A C    +     +L K++++ +  +  TY  L+ G C+ GR+
Sbjct: 412 HDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRL 471

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           E+A  +   ++  G ++  +TY  ++      G + +A+  +          D   +  +
Sbjct: 472 EDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEII 531

Query: 285 GSKLIGLERFNEANFILKEMNKRDLKMGF 313
              L   +  ++A  +L+EM  R L   F
Sbjct: 532 ICSLFDKDENDKAEKLLREMITRGLLYSF 560



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 91/205 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y TLI  LCK+ +   AL ++  +      L  + +  I+  + + K + +A+ L   M
Sbjct: 177 SYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEM 236

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
              R+S ++  Y+ L++ +C  G L    G+  KM  E +  D  T++ LV   C+ GRV
Sbjct: 237 VSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRV 296

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA   L  M+  G      TY  +M     +     A   +     R +      +  +
Sbjct: 297 KEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIV 356

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            +    ++  ++A  + KEM+ + +
Sbjct: 357 INGFCKIKMVDQAMKLFKEMHHKQI 381



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 35/235 (14%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  LI   C + K+ +A+ + + M          TF+ ++    +  R++EA   + +M
Sbjct: 247 TYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMM 306

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL---------------------------- 196
            +  + PD+  YN L+  YC    +     +L                            
Sbjct: 307 MKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMV 366

Query: 197 -------KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                  K+M  +++  +  TY++L+ G C++GR+  A  L+  M D GQ     TY+ +
Sbjct: 367 DQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSI 426

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           + AL +     +A+  ++    + I+ +   +  L   L    R  +A  I +++
Sbjct: 427 LDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDL 481



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 2/238 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
            FN + N    L ++      LA++ K G+ P     +T I   C   +I +AL   D +
Sbjct: 107 NFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKL 166

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF L  +++  +++ L +      A  L+  +    V  D+  Y+ ++ + C   N+
Sbjct: 167 VALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNV 226

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  +M   ++ ++  TY AL+ G C  G++++A  L  +M  +  +    T+  +
Sbjct: 227 NDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNIL 286

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           + A  + G   +A   + +   + IK D   + SL      +   N A  IL  M+ R
Sbjct: 287 VDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHR 344



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 73/167 (43%)

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  IL  L + K       L + M+   + P+   +N L+  +C  G +     VL K+ 
Sbjct: 73  FGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKIL 132

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           +     D  T +  + G C  G++ +A     ++V  G  +   +Y  ++  L ++G   
Sbjct: 133 KMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETR 192

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            A++ +    G+ ++LD  ++ ++   +   +  N+A  +  EM  R
Sbjct: 193 AALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSR 239



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 12/184 (6%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126
           F+T+ TF+   +  +++S+ + L R         P    +  ++G L K K     L + 
Sbjct: 39  FSTSTTFHNNNDVVDAVSLFNCLLR-----QNPTPPDMEFGQILGSLVKSKHYHTVLSLF 93

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   G   + + F+ +++   +   +  A+ ++  + ++   PD    N  +  +C K
Sbjct: 94  QKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLK 153

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ-----SV 241
           G +        K+       D  +Y  L+ G C+ G    A  LLRR+  DG+      V
Sbjct: 154 GQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRV--DGKLVQLDVV 211

Query: 242 LYST 245
           +YST
Sbjct: 212 MYST 215



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 80/210 (38%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI   C+L  I  A  V+  + + G+    IT +  +       ++ +A   
Sbjct: 103 PNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNF 162

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +  +    D  +Y  L+   C  G   A   +L++++ + +  D   Y  ++   C+
Sbjct: 163 HDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCK 222

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V +AF L   MV    S    TY+ ++     +G    A+         +I  D   
Sbjct: 223 DKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYT 282

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F  L        R  EA   L  M K+ +K
Sbjct: 283 FNILVDAFCKEGRVKEAKNGLAMMMKQGIK 312


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LIG  C   K+D AL   D M E G  ++  T++ ++  L    R  EA+ L
Sbjct: 584 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 643

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    ++PD+  YN L+  +C +GN+     + + M    + A   TY AL+    +
Sbjct: 644 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSK 703

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+E   L    V  G       Y  ++ +    G   +A + +     + I  D   
Sbjct: 704 KGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVT 763

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L   L  L R +EA  ++ EM +R ++
Sbjct: 764 YNTLMRGLCLLGRVDEARKLIDEMTERGIQ 793



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 75/148 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI        ID A  ++  M +       +T++ ++  L    R++EA  L++ M 
Sbjct: 729 YNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMT 788

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  + PDL  YN L++ Y  KG++     +  +M  +       TY+AL+ G C+ G+ +
Sbjct: 789 ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 848

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +A  +++ MV++G +   STY  ++  L
Sbjct: 849 DAENMVKEMVENGITPDDSTYISLIEGL 876



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P +  Y T+I   CK+ ++DEA++V D ++ +G     A+ ++ ++       +++ A  
Sbjct: 548 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALL 607

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M E  V+  +  YN L+ A    G  T    ++++M  + L  D  TY+ L+ G C
Sbjct: 608 YRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHC 667

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G V++A  +   M   G      TY  ++ AL + G   +  K       R I+ D  
Sbjct: 668 KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLV 727

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
           L+ +L +        + A  I+ EM K+
Sbjct: 728 LYNALINSHSTSGNIDRAFEIMGEMEKK 755



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 73/161 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  L K  ++ E  ++ D     G     + ++ +++  +    ++ A+ +M  M+
Sbjct: 694 YTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEME 753

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + R++PD   YN L+   C  G +     ++ +M E  +  D  TY+ L+ G    G V+
Sbjct: 754 KKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVK 813

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A  +   M++ G +    TY  ++  L + G    A   V
Sbjct: 814 DALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 854


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    YD LI   CK  K+DEA  V   M E G+  +  T+  ++  L + KR++ A  +
Sbjct: 412 PNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKV 471

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E   +P++  Y  ++   C  G       ++  MEE+    +  TY A++ G  +
Sbjct: 472 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGK 531

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +GRVE+   LL++M   G +  + TY  ++      G   +A K +
Sbjct: 532 SGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLL 577



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 34/261 (13%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEA 122
           FI +T     V+  LC   ++++K F            P    Y TLI   CK   I++A
Sbjct: 218 FIPDTSTYSKVIGYLCNA-SKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQA 276

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
               D M   G   + +T+  ++    + +++ +A  + E+M     +P++  Y  L+  
Sbjct: 277 RNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDG 336

Query: 183 YCFKGNLTATSGVLKKMEEEKL-------------GA----DARTYDALVLGACRAGRVE 225
            C  G +   S + K M++E +             GA    +  TY ALV G C+A +V+
Sbjct: 337 LCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVK 396

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY--AQAVKFVMVCGGRDIKLDTELFGS 283
           EA  LL+ M  +G    +  Y  ++    + G    AQ V   M+  G D  + T  + S
Sbjct: 397 EARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYT--YSS 454

Query: 284 LGSKLIGLERFNEANFILKEM 304
           L  +L   +R + A  +L +M
Sbjct: 455 LIDRLFKDKRLDLALKVLSKM 475



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 67  FNTANTFNF------ITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
            N  N  NF      I   E + +V+ ++      + KGF P  S Y  +IG LC   K+
Sbjct: 185 LNKVNISNFSRCLCGIGKFEKAYNVIREM------MSKGFIPDTSTYSKVIGYLCNASKV 238

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           ++A ++   M   G       +  ++    +   +E+A    + M+    +P++  Y  L
Sbjct: 239 EKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTAL 298

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           + AY     ++  + V + M  +    +  TY AL+ G C+AG++E+A  + + M
Sbjct: 299 IHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIM 353



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+ P    Y +LI RL K K++D AL+V+  M E     + + +  ++  L +  + 
Sbjct: 441 LECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKT 500

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA+ LM +M+E   +P++  Y  ++  +   G +     +L++M  +    +  TY  L
Sbjct: 501 DEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVL 560

Query: 215 VLGACRAGRVEEAFVLLRRM 234
           +   C  G ++EA  LL  M
Sbjct: 561 INHCCSTGLLDEAHKLLEEM 580



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 76/164 (46%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC + K ++A  V+  M   GF     T+  ++  L    ++E+A+ L + MK   ++PD
Sbjct: 197 LCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPD 256

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  L+ ++C  G +        +ME +    +  TY AL+    ++ +V +A  +  
Sbjct: 257 VYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYE 316

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
            M+  G +    TY  ++  L + G   +A +   +    ++++
Sbjct: 317 MMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEI 360



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 87/206 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK  ++ EA  ++  M+  G   + + +  ++    +  +++EA  +
Sbjct: 377 PNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEV 436

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E    P++  Y+ L+        L     VL KM E     +   Y  ++ G C+
Sbjct: 437 FTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCK 496

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+ +EA+ L+  M + G +    TY  ++    + G   + ++ +     +    +   
Sbjct: 497 VGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVT 556

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  L +        +EA+ +L+EM +
Sbjct: 557 YRVLINHCCSTGLLDEAHKLLEEMKQ 582



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 101 PRKSAYDTLIGRLCKLKK-----IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           P    Y+ LIG +C  ++     +D A +    M E G  L+ +        L    + E
Sbjct: 145 PGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFE 204

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A+ ++  M      PD + Y+ ++   C    +     + ++M+   +  D   Y  L+
Sbjct: 205 KAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLI 264

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
              C+AG +E+A      M  DG +    TY  ++ A L+    ++A +   +   +   
Sbjct: 265 DSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCT 324

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKR-----DLKMGFKLRD 317
            +   + +L   L    +  +A+ I K M K      D+ M F++ D
Sbjct: 325 PNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVD 371



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 3/141 (2%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LCK  K  EAL +++   +  F    + +  ++S L      EEA   +  M+     P+
Sbjct: 20  LCKSGKWREALSLLE---KEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPN 76

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  LL     K  L     +L  M  E      R +++LV   CR+G    A+ LL+
Sbjct: 77  VLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLK 136

Query: 233 RMVDDGQSVLYSTYAHVMGAL 253
           +MV  G    Y  Y  ++G +
Sbjct: 137 KMVQCGCQPGYVVYNILIGGI 157



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 46/248 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LC+    +EA+  +  M       + +T+  +L      +++     +
Sbjct: 40  PDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRI 99

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M      P    +N L+ AYC  G+      +LKKM +         Y+ L+ G C 
Sbjct: 100 LSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICS 159

Query: 221 A----------------------------------------GRVEEAFVLLRRMVDDGQS 240
           +                                        G+ E+A+ ++R M+  G  
Sbjct: 160 SEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFI 219

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
              STY+ V+G L       +A +         I  D  ++ +L      ++ F +A FI
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTL------IDSFCKAGFI 273

Query: 301 LKEMNKRD 308
            +  N  D
Sbjct: 274 EQARNWFD 281


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 2/217 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  +  L++A   + D ET+  L  +         A T+N I N       L     
Sbjct: 342 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 401

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            +  +      P    Y TLI   CK +++D A+ +   M   G GL  +T+  ++S L+
Sbjct: 402 IVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLS 461

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  R  +A  ++  M E  + PD T Y  ++ A+C KG++     +LK+M+ +       
Sbjct: 462 KAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVV 521

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           TY+ ++ G C+ G+++ A +LL  M++ G S    TY
Sbjct: 522 TYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITY 558



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI   CK    +  L +   M E G    A+T++ I++ L R + ++ A G+
Sbjct: 343 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 402

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   + PD   Y  L+  YC +  L     + + M  E +G D  TY AL+ G  +
Sbjct: 403 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSK 462

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           AGR  +A  +L  M++ G     +TY  V+ A  R G
Sbjct: 463 AGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKG 499



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC++ +I++A  V + M   G   +A+ F  ++    +    E    L
Sbjct: 308 PDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLEL 367

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+E  V PD   YN ++   C   +L + SG++ +M    L  D  TY  L+ G C+
Sbjct: 368 HREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCK 427

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              ++ A  + + MV +G  +   TY  ++  L + G  A A
Sbjct: 428 EEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADA 469



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 14/213 (6%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +++T+I  +C+   +D A  +   M+E G      T+  ++  L R  R+E+A G+ E M
Sbjct: 277 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 336

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               + P+   +  L+ A+C KG+      + ++M E  +  DA TY+A+V G CRA  +
Sbjct: 337 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 396

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY-------YAQAVKFVMVCGGRDIKLD 277
           + A  ++  M   G      TY  ++      GY        A  +K  MV  G  + LD
Sbjct: 397 KSASGIVVEMRSAGLRPDTVTYTTLID-----GYCKEEELDMAMEIKQNMVAEG--VGLD 449

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              + +L S L    R  +A  +L EM +  L+
Sbjct: 450 EVTYTALISGLSKAGRSADAERVLGEMMEAGLE 482



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 1/193 (0%)

Query: 93  LARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD G P ++  ++ L+  L +L ++  A  V D M   G   + ++F+ ++S + R 
Sbjct: 229 LQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRA 288

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             ++ A  L   M E  V+PD+  Y  L+   C  G +    GV +KM    +  +A  +
Sbjct: 289 GDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVF 348

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
             L+   C+ G  E    L R M + G      TY  ++  L R      A   V+    
Sbjct: 349 TILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRS 408

Query: 272 RDIKLDTELFGSL 284
             ++ DT  + +L
Sbjct: 409 AGLRPDTVTYTTL 421



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 77/180 (42%)

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           + G    A  F+ ++  L R   +  A  + + M+   V   + ++N +++  C  G+L 
Sbjct: 233 DAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLD 292

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               + ++M E  +  D  TY AL+ G CR GR+E+A  +  +M   G       +  ++
Sbjct: 293 GAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILI 352

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            A  + G     ++       R ++ D   + ++ + L        A+ I+ EM    L+
Sbjct: 353 DAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLR 412


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 5/214 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T I  LCK  K+D+ L +++ M  GG     +TF  I+S L +  R+++A+ 
Sbjct: 184 IPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQ 243

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA--DARTYDALVLG 217
           + + M E    PD   Y+ +L        L     VL+ M+  K G   +  T++A +  
Sbjct: 244 VFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGA 303

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIK 275
            CR+G+   A  +L  M++ G      +Y  V+  L + G    A K    M+  G   K
Sbjct: 304 LCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGC-CK 362

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            D   F +L S      R ++A+ +L EM  +++
Sbjct: 363 PDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNI 396



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TLI  LCK   +D A  ++  MA+ G   + +T+  ++  L + +R  +A   ++ M 
Sbjct: 13  YTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRML 72

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                PDL  YN L+   C    +     VL+++       +  TY  LV+  CR  R++
Sbjct: 73  RSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLD 132

Query: 226 EAFVLLRRMV 235
           +A  L+R M+
Sbjct: 133 QARGLIREMI 142



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 131/313 (41%), Gaps = 28/313 (8%)

Query: 10  KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD--CCF 67
           KF + +++L+     +SG+ P+  +  +  D +  +G+  D     + L+++  D  CC 
Sbjct: 309 KFPLAKNILL--GMIESGSLPNLLSYNFVIDGLCKSGNVDD----AWKLSRKMLDSGCCK 362

Query: 68  NTANTFNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALR 124
                FN + +       LS    L   +   +   P    Y+TLI    K   + +A  
Sbjct: 363 PDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKL 422

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           ++  M   G   + +T+  +++   +    EEA  L + M      PD+  YN +L+A+ 
Sbjct: 423 LLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFS 482

Query: 185 FKGNLTATSGVLKKMEEEK--LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
             G ++   GV ++++ +      DA TY  L+ G CRA   E+   LL+ M   G S  
Sbjct: 483 KAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCD 542

Query: 243 YSTYAHVMGALLR--------LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
             TY  ++  L          L  Y Q +        +D      +F SL    +     
Sbjct: 543 SYTYNVLIAKLAETEEVPSKALAVYQQMLD-------QDCVPSASIFNSLVRLFLRTGDV 595

Query: 295 NEANFILKEMNKR 307
           N A  +++EMN++
Sbjct: 596 NSARSMVQEMNEK 608



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 4/210 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK ++  +A++ V  M   G     +T++ ++  L    RM++A  +
Sbjct: 43  PNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLV 102

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ +     +P+   Y+ L+   C +  L    G++++M       +   Y   + G C 
Sbjct: 103 LQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCE 162

Query: 221 AGRVEEAFVLLR---RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           A R + +    R    M++ G+     TY   +  L + G   + ++ +       I  D
Sbjct: 163 A-RCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPD 221

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
              F S+ S L    R ++A  + K M +R
Sbjct: 222 VVTFCSIISGLCKANRIDDAFQVFKGMLER 251



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 2/143 (1%)

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           D M E G     +T++  +S L +  ++++   ++E M    + PD+  +  +++  C  
Sbjct: 176 DEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKA 235

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             +     V K M E     D+ TY  ++    RA R++    +L  M       +   Y
Sbjct: 236 NRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVY 295

Query: 247 AH--VMGALLRLGYYAQAVKFVM 267
            H   +GAL R G +  A   ++
Sbjct: 296 THNAFIGALCRSGKFPLAKNILL 318



 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 39/81 (48%)

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  L+   C  G+L A   +L+KM +     +  TY AL+ G C+A R  +A   ++
Sbjct: 10  VVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVK 69

Query: 233 RMVDDGQSVLYSTYAHVMGAL 253
           RM+  G      TY  ++  L
Sbjct: 70  RMLRSGCEPDLVTYNSLIHGL 90



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           A   TY  L+ G C++G ++ A  LL++M D G +    TY  ++  L +      A++ 
Sbjct: 8   ASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQT 67

Query: 266 V--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           V  M+  G +  L T  + SL   L    R ++A  +L+E+
Sbjct: 68  VKRMLRSGCEPDLVT--YNSLIHGLCMANRMDDAGLVLQEL 106


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 17/222 (7%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN------ 78
           K G  PD  T   Y  L++     + +   + + N  A+        ++N + N      
Sbjct: 294 KQGIKPDVVT---YCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIK 350

Query: 79  -TENSLSVLSDL-CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
             + ++++  ++ C+ +       P    Y++LI  LCK  KI  AL++VD M + G   
Sbjct: 351 KVDEAMNLFKEMHCKNI------IPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPH 404

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             IT++ IL  L +  ++++A  L+  MK+  + PD+  Y  L+   C  G L     + 
Sbjct: 405 DKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIF 464

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           + +  +       TY  ++ G C     ++A  LL +M D+G
Sbjct: 465 EDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNG 506



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 83/157 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+   C +K++++A  + + MA+GG   +  +++ +++   + K+++EA  L
Sbjct: 299 PDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNL 358

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + PD+  YN L+   C  G ++    ++ +M +  +  D  TY++++   C+
Sbjct: 359 FKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCK 418

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
             +V++A  LL +M D+G      TY  ++  L + G
Sbjct: 419 NHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGG 455



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 93/207 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  +CK+K ++EA  +   M   G     +T+  ++S      ++ +A GL
Sbjct: 194 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGL 253

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    ++PD+  ++ L+  +C +G +     VL  M ++ +  D  TY +L+ G C 
Sbjct: 254 FNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCL 313

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +V +A  +   M   G +    +Y  ++    ++    +A+        ++I  D   
Sbjct: 314 VKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVT 373

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL   L    + + A  ++ EM+ R
Sbjct: 374 YNSLIDGLCKSGKISYALKLVDEMHDR 400



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 106/235 (45%), Gaps = 7/235 (2%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           N F+ + +T  S SV +++      L KG+ P      TLI  LC   +I +AL   D +
Sbjct: 99  NCFSQLGHTHFSFSVFANI------LKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKV 152

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF L+ + +  +++ L +  +   A  L+  +    V P++  YN ++ + C    +
Sbjct: 153 VALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLV 212

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  +M  + +  D  TY AL+ G C  G++ +A  L  +M+ +  +    T++ +
Sbjct: 213 NEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSIL 272

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +    + G   +A   + +   + IK D   + SL      +++ N+A  I   M
Sbjct: 273 VDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTM 327



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 91/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+   CK  ++ EA  V+ +M + G     +T+  ++      K++ +A  +
Sbjct: 264 PDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSI 323

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V+ ++ +YN ++  +C    +     + K+M  + +  D  TY++L+ G C+
Sbjct: 324 FNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCK 383

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +G++  A  L+  M D G      TY  ++ AL +     +A+  +       I+ D   
Sbjct: 384 SGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYT 443

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L   L    R  +A  I +++
Sbjct: 444 YTILIDGLCKGGRLKDAQNIFEDL 467



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 97  DKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G P  K  Y++++  LCK  ++D+A+ ++  M + G      T+  ++  L +G R++
Sbjct: 399 DRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLK 458

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  + E +     +  +  Y  ++  +C          +L KME+     +A+TY+ ++
Sbjct: 459 DAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIII 518

Query: 216 LGACRAGRVEEAFVLLRRMVDDG 238
           L        + A  LLR M+  G
Sbjct: 519 LSLFEKDENDMAEKLLREMIARG 541


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ LI +LCK ++ D+A R+   MA  G   + +T+  ++  L +   +E+A  L
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M++  +   +  YN L+  YC +G+L    G+L  M +E L   A +Y  L+ G CR
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G +     L R M + G
Sbjct: 456 NGDLSSCMELHREMAERG 473



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 73/136 (53%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y  LI  LCK   I++AL + D M + G  ++   ++ +++   +   ++ A GL
Sbjct: 371 PNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGL 430

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  ++P   +Y+ L+   C  G+L++   + ++M E  +  +  T+ AL+ G C+
Sbjct: 431 LSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCK 490

Query: 221 AGRVEEAFVLLRRMVD 236
             +++EA  L  +M+D
Sbjct: 491 DKKMDEAARLFDKMID 506



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TL+   C++++++ ALR+   M   GF  S      ++  L + + +EEA+ L   + 
Sbjct: 271 YRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLG 330

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           ++ + P++ AYN L+   C          + K+M    L  +  TY  L+   C+ G +E
Sbjct: 331 DLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIE 390

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +A  L  +M D G  V    Y  ++    + G
Sbjct: 391 DALCLFDKMRDKGIKVTVYPYNSLINGYCKQG 422



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E +L +  D+ R       GF P ++    +I  L K + ++EA  +   + + G   + 
Sbjct: 285 EMALRITHDMIRL------GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
             ++ ++  L + +R ++A  L + M    + P+   Y  L+ A C +G +     +  K
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M ++ +      Y++L+ G C+ G ++ A  LL  MV +G +   ++Y+ ++  L R G 
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  ++       R I  +   F +L +     ++ +EA  +  +M
Sbjct: 459 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKM 504



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDLCRTLA 94
           Y+ L+N    +  L+  R LL+   ++    TA +++ +         LS   +L R +A
Sbjct: 411 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA 470

Query: 95  RLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
             ++G    +  +  LI   CK KK+DEA R+ D M +     + +TF+ ++        
Sbjct: 471 --ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGN 528

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           + +A+ L + M E+ + PD   Y  L++  C    ++  +  +  +E      +  +  A
Sbjct: 529 IRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTA 588

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L+ G  R GR  E + L   M   G  +   ++  ++ A L+
Sbjct: 589 LLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALK 630



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 35/221 (15%)

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           V+ +    G  ++  T   IL  L + ++   A  L + M +  V  D   Y   + AYC
Sbjct: 150 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYC 209

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSV 241
              NL    G++ +ME E + A A  Y+ L+ G C+  RV+EA  +   MV+ G     V
Sbjct: 210 ESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEV 269

Query: 242 LYSTYAH-------------VMGALLRLGYYAQAVK-----------------FVMVCGG 271
            Y T  +             +   ++RLG+                       F + C  
Sbjct: 270 TYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKL 329

Query: 272 RDIKLDTELFG--SLGSKLIGLERFNEANFILKEMNKRDLK 310
            D+ +   +F   +L  KL   ERF++A+ + KEM  R L+
Sbjct: 330 GDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLE 370



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 106/256 (41%), Gaps = 24/256 (9%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           +S ++ R   + G  PD+    +Y  +++A   E   E +   LN      C++      
Sbjct: 636 KSCVLFREMKEQGVKPDD---IFYTCMIDALSKE---ENMIQALN------CWDQMVVDG 683

Query: 75  FITNTENSLSVLSDLCRT---------LARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL 123
           +  NT     ++++LC++            +  G   P K  Y+  +        +++A 
Sbjct: 684 YSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAK 743

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +   M +G    S ++F+ ++  L +  +++EA  LM  + E   SPD  +Y+ ++   
Sbjct: 744 DLHSAMLQGHLA-SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHEL 802

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C  G++     +  +M  + L  D   Y+  +      G  ++A  +   M+  G    +
Sbjct: 803 CKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNW 862

Query: 244 STYAHVMGALLRLGYY 259
            TY  ++  +  + +Y
Sbjct: 863 DTYRALLSGISLMLHY 878



 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 18/198 (9%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           YD +V   G + D  T R L++        + AN   F+ + ENS +VL++   +L  L 
Sbjct: 536 YDQMVEM-GLKPDNYTYRSLISGLCLTSGVSKAN--EFVADLENSYAVLNNF--SLTALL 590

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
            GF R+              +  E   + D MA  G  L  ++F  I+    +    E++
Sbjct: 591 YGFFREG-------------RFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKS 637

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L   MKE  V PD   Y  ++ A   + N+        +M  +    +  T+  L+  
Sbjct: 638 CVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINN 697

Query: 218 ACRAGRVEEAFVLLRRMV 235
            C++G +  A +L + M+
Sbjct: 698 LCKSGYLGSAELLCKEML 715



 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 76/179 (42%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+  LCK  ++ EA+ V ++M   G     +T+  ++    R + +E A  +   M 
Sbjct: 236 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMI 295

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            +   P     ++++     K  +     +  K+ +  +  +   Y+AL+   C+  R +
Sbjct: 296 RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFD 355

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +A  L + M   G      TYA ++ AL + G    A+        + IK+    + SL
Sbjct: 356 DADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSL 414


>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 408

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 77/151 (50%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           F  + +Y+TLI  LCK+ +   ALR++  + E       + +  I++ L + K +++A+ 
Sbjct: 116 FLDRVSYETLINGLCKVGETRAALRLLKEVNEKIVQYDVVMYTAIINGLCKDKLVDDAFD 175

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M   RVSPD+  YN ++  +C  G L    G+   M+ E + AD  T++ LV   C
Sbjct: 176 LYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEADEYTFNTLVSAFC 235

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
           + G V E   ++  M+ +G      TY  +M
Sbjct: 236 KEGNVREGKAVVAVMMKEGVKPDIITYNSLM 266



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 18/222 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I   C + ++ +A+ + + M          TF+ ++S   +   + E   +
Sbjct: 187 PDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEADEYTFNTLVSAFCKEGNVREGKAV 246

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART---------- 210
           + VM +  V PD+  YN L+  YC    +     +   M +  + A+ RT          
Sbjct: 247 VAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCK 306

Query: 211 --------YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
                   Y +L+ G C++GR+ +A  L+  M D GQ     TY  ++ AL ++ +  + 
Sbjct: 307 EIIPDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILYALCKIHHVEKT 366

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +  +     + I+ D   +  L + L    R  EA  I  ++
Sbjct: 367 IALLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAREIFPDL 408



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LCK K +D+A  +   M          T++ ++       R+++A GL   MK
Sbjct: 157 YTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMK 216

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V  D   +N L++A+C +GN+     V+  M +E +  D  TY++L+ G C    V+
Sbjct: 217 LENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVD 276

Query: 226 EAFVLLRRMVDDG 238
           +A  +   MV  G
Sbjct: 277 KAKNIFNTMVQRG 289



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY----------------- 183
           F  IL+ L    R   A    + +    + PDL  YN L+  +                 
Sbjct: 66  FGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFSQLGHTHFLDRVSYETL 125

Query: 184 ----CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
               C  G   A   +LK++ E+ +  D   Y A++ G C+   V++AF L   MV    
Sbjct: 126 INGLCKVGETRAALRLLKEVNEKIVQYDVVMYTAIINGLCKDKLVDDAFDLYTEMVAKRV 185

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           S    TY  ++     +G    A+         +++ D   F +L S         E   
Sbjct: 186 SPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEADEYTFNTLVSAFCKEGNVREGKA 245

Query: 300 ILKEMNKRDLK 310
           ++  M K  +K
Sbjct: 246 VVAVMMKEGVK 256


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 11/244 (4%)

Query: 75  FITNTENSLSVLSDLCRTLA-----------RLDKGFPRKSAYDTLIGRLCKLKKIDEAL 123
           F  N  N   +L  LCR L            R +   P   +Y+T+I   C+ K++++AL
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            + + M   G   S +T+  ++    +  +M+EA G ++ MK + +  DL  Y  L+  +
Sbjct: 198 ELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGF 257

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C  G L     +  ++ E      A TY+ L+ G C+ G+++EA  +   M++ G     
Sbjct: 258 CDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNV 317

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++  L  +G   +A++ + +   +D + +   +  + +KL       +A  I++ 
Sbjct: 318 YTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVEL 377

Query: 304 MNKR 307
           M KR
Sbjct: 378 MKKR 381



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC + K  EAL+++++M E     +A+T++ I++ L +   + +A  +
Sbjct: 315 PNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEI 374

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM--EEEKLGADARTYDALVLGA 218
           +E+MK+ R  PD   YN LL   C KG+L   S +L  M  +      D  +Y+AL+ G 
Sbjct: 375 VELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGL 434

Query: 219 CRAGRVEEAFVLLRRMVD 236
           C+  R+ +A  +   +V+
Sbjct: 435 CKENRLHQALDIYDLLVE 452



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 85/201 (42%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  LI   CK  K+DEA+  +  M   G     + +  ++        ++    L + + 
Sbjct: 215 WGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVL 274

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E   SP    YN L+  +C  G L   S + + M E  +  +  TY  L+ G C  G+ +
Sbjct: 275 ERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTK 334

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA  LL  M++  +     TY  ++  L + G  A AV+ V +   R  + D   +  L 
Sbjct: 335 EALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILL 394

Query: 286 SKLIGLERFNEANFILKEMNK 306
             L      +EA+ +L  M K
Sbjct: 395 GGLCAKGDLDEASKLLYLMLK 415



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 90/203 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ L+  LC+  +  +A+ ++  M          +++ ++     GK +E+A  L   MK
Sbjct: 145 HNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMK 204

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               S  L  +  L+ A+C  G +    G LK+M+   L AD   Y +L+ G C  G ++
Sbjct: 205 GSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELD 264

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
               L   +++ G S    TY  ++    +LG   +A +       R ++ +   +  L 
Sbjct: 265 RGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLI 324

Query: 286 SKLIGLERFNEANFILKEMNKRD 308
             L G+ +  EA  +L  M ++D
Sbjct: 325 DGLCGVGKTKEALQLLNLMIEKD 347



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   CKL ++ EA  + + M E G   +  T+  ++  L    + +EA  L
Sbjct: 280 PCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQL 339

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M E    P+   YN ++   C  G +     +++ M++ +   D  TY+ L+ G C 
Sbjct: 340 LNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCA 399

Query: 221 AGRVEEAFVLLRRMVDD 237
            G ++EA  LL  M+ D
Sbjct: 400 KGDLDEASKLLYLMLKD 416



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 35/200 (17%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRG--KRMEEA 157
           P   +Y+ LI  LCK  ++ +AL + D++ E  G G    T   + S L  G   +  E 
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481

Query: 158 W-------------------------GLMEVMK----EIRVS---PDLTAYNYLLTAYCF 185
           W                         G++ V K    ++RVS   P +  YN LL++ C 
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           +G+L     + ++M+ +    D  +++ ++ G+ +AG ++ A  LL  M   G S    T
Sbjct: 542 EGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFT 601

Query: 246 YAHVMGALLRLGYYAQAVKF 265
           Y+ ++   L+LGY  +A+ F
Sbjct: 602 YSKLINRFLKLGYLDEAISF 621



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 56/120 (46%)

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           +++K   A  V+ +M + GF  +    + +L  L R     +A  L+  M+   + PD+ 
Sbjct: 119 QMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVF 178

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +YN ++  +C    L     +  +M+         T+  L+   C+AG+++EA   L+ M
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM 238


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 10/259 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    ++ L++  G  R  +    ++ +  R  C  +  T+N + ++     +L     
Sbjct: 275 EPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVA 334

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL- 148
               ++ KG  P    Y TLI  L +  KID A+   D M   G   +  T++ ++ +  
Sbjct: 335 LKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHG 394

Query: 149 TRGKRMEEAWGLMEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            RGK  E    +M V  E+R +   PD+  +N LL  +   G  +  SGV K+M++    
Sbjct: 395 VRGKFPE----MMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI 450

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  TY +L+    R G  + A  + +RM++ G     STY  V+ AL R G + QA K 
Sbjct: 451 PERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 510

Query: 266 VMVCGGRDIKLDTELFGSL 284
                 RD K D   + SL
Sbjct: 511 FAEMEERDCKPDEYSYSSL 529



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 106/214 (49%), Gaps = 13/214 (6%)

Query: 33  PTSAYYDDLVNA---AGHERDLETV-RYLLNKRARDCCFNTANTFNFITNTENSLSV-LS 87
           P +  Y  LV+A   AG  RD   V R +++   +        T+N + +  + ++V   
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIV----TYNVVLHVYSKMAVPWK 225

Query: 88  DLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKI-DEALRVVDIMAEGGFGLSAITFHPI 144
           ++   +A + +    P +  Y+TLI   C+ + +  EA +V D M   GF    +TF+ +
Sbjct: 226 EVVELVASMKEHGVAPDRYTYNTLIS-CCRRRALYKEAAQVFDEMKASGFEPDKVTFNSL 284

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L V  + +R +EA  +++ M+ +   P +  YN L+++Y   G L     + ++ME + +
Sbjct: 285 LDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGI 344

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             D  TY  L+ G  RAG+++ A V    MV +G
Sbjct: 345 KPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNG 378



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 19/246 (7%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           PDE +   Y  L++A  + + L+ ++ L +    D         N++  T   L +++  
Sbjct: 521 PDEYS---YSSLLHAYANAKRLDKMKALSD----DIYSERIEPHNWLVKT---LVLVNSK 570

Query: 90  CRTLARLDKGF----PRKSAYD-----TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
              LA  +K F     ++ + D      ++    K + + +  +++ +M E    LSA T
Sbjct: 571 VNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAAT 630

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++ + +R    E+   ++  +K   V PD  +YN ++ AY  KG +   S +  +M+
Sbjct: 631 YNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK 690

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              L  D  TY+  V         EEA  L+R MV  G      TY  ++    R G   
Sbjct: 691 CSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLT 750

Query: 261 QAVKFV 266
            A  FV
Sbjct: 751 DAKIFV 756



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 4/207 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR-GKRMEEAWG 159
           P   AY  L+    +  +  +A+ V   M + G   + +T++ +L V ++     +E   
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  MKE  V+PD   YN L++    +      + V  +M+      D  T+++L+    
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 289

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +A R +EA  +++ M   G      TY  ++ + ++ G   QAV        + IK D  
Sbjct: 290 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVV 349

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            + +L S   GL+R  + +  + E ++
Sbjct: 350 TYTTLIS---GLDRAGKIDAAIVEYDE 373



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 3/137 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  Y +LI    +    D A+++   M E G      T++ +LS L RG R E+A  
Sbjct: 450 IPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEK 509

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M+E    PD  +Y+ LL AY     L     +   +  E++         LVL   
Sbjct: 510 LFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNS 569

Query: 220 RA---GRVEEAFVLLRR 233
           +       E+AF+ LR+
Sbjct: 570 KVNNLAEAEKAFLELRQ 586



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 26/131 (19%), Positives = 61/131 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y++L+    +L   ++   ++  +   G      +++ ++    R  +M+EA  L   
Sbjct: 629 ATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSE 688

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           MK   + PD+  YN  + +Y           +++ M  +    + RTY+++V G CR G+
Sbjct: 689 MKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGK 748

Query: 224 VEEAFVLLRRM 234
           + +A + +  +
Sbjct: 749 LTDAKIFVSNL 759



 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY-YAQAV 263
           G DA  Y ALV    RAGR  +A  + RRMVD G      TY  V+    ++   + + V
Sbjct: 169 GPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVV 228

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           + V       +  D   + +L S       + EA  +  EM
Sbjct: 229 ELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEM 269



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           L+ Q+V + +     G  PD  T   Y  L++       ++      ++  R+ C     
Sbjct: 328 LLEQAVALKQEMEVKGIKPDVVT---YTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLC 384

Query: 72  TFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N +           ++      L   GF P    ++TL+    +     E   V   M
Sbjct: 385 TYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEM 444

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            + G+     T+  ++S  +R    + A  + + M E  + PD++ YN +L+A    G  
Sbjct: 445 KKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRW 504

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
                +  +MEE     D  +Y +L+     A R+++    ++ + DD
Sbjct: 505 EQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDK----MKALSDD 548


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 6/206 (2%)

Query: 72   TFNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDI 128
            T+N + N    E  + V + +   +++ D   P    Y+ LIG  C +   +EALR++D 
Sbjct: 1091 TYNTLINGFVKEGKIGVAAQVFNEMSKFDLS-PNCVTYNALIGGHCHVGDFEEALRLLDH 1149

Query: 129  MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
            M   G  L+ +T+  +L+ L + ++ E A  L+E M+   +     AY  L+   C  G 
Sbjct: 1150 MEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGM 1209

Query: 189  LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
            L     ++  M ++ +  D  TY +L+ G CR G ++ A  ++ RM   G  +    Y+ 
Sbjct: 1210 LDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYST 1269

Query: 249  VMGALLRLGYYAQAVKF--VMVCGGR 272
            ++    + G   +A+K   VM C G 
Sbjct: 1270 LIYNFCQHGNVTEAMKVYAVMNCNGH 1295



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 6/188 (3%)

Query: 72   TFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVD 127
            TFN + N    E +L    +L + +   + GF P    Y+TL+   CK  +   A+ ++D
Sbjct: 986  TFNILINGLCVEGNLKKAGNLLKQME--ENGFVPTIVTYNTLLNWYCKKGRYKAAIELID 1043

Query: 128  IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
             M   G      T++  +  L    R  +A+ L++ M++  +SP+   YN L+  +  +G
Sbjct: 1044 YMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEG 1103

Query: 188  NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
             +   + V  +M +  L  +  TY+AL+ G C  G  EEA  LL  M   G  +   TY 
Sbjct: 1104 KIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYG 1163

Query: 248  HVMGALLR 255
             ++  L +
Sbjct: 1164 TLLNGLCK 1171



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 68/143 (47%)

Query: 104  SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
            S +D LI    K   ID A+   +++   GF  S  T + IL+ + + KR E  W L   
Sbjct: 915  SVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFRE 974

Query: 164  MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
            M +  + P++  +N L+   C +GNL     +LK+MEE        TY+ L+   C+ GR
Sbjct: 975  MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGR 1034

Query: 224  VEEAFVLLRRMVDDGQSVLYSTY 246
             + A  L+  M+  G      TY
Sbjct: 1035 YKAAIELIDYMICKGIEADVCTY 1057



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 1/217 (0%)

Query: 97   DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
            DKG  P    ++ LI  LC    + +A  ++  M E GF  + +T++ +L+   +  R +
Sbjct: 977  DKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYK 1036

Query: 156  EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
             A  L++ M    +  D+  YN  +   C          +LKKM +E +  +  TY+ L+
Sbjct: 1037 AAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLI 1096

Query: 216  LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
             G  + G++  A  +   M     S    TY  ++G    +G + +A++ +       ++
Sbjct: 1097 NGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLR 1156

Query: 276  LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
            L+   +G+L + L   E+F  A  +L+ M   D+ +G
Sbjct: 1157 LNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVG 1193



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 103/236 (43%), Gaps = 2/236 (0%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
            P    Y+ L+N    E  +     + N+ ++        T+N +      +    +  R 
Sbjct: 1087 PNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRL 1146

Query: 93   LARLDKGFPR--KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
            L  ++    R  +  Y TL+  LCK +K + A R+++ M      +  I +  ++  L +
Sbjct: 1147 LDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCK 1206

Query: 151  GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
               ++EA  L+  M +  V+PD+  Y+ L+  +C  GN+ +   ++ +M    L  +   
Sbjct: 1207 NGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKII 1266

Query: 211  YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            Y  L+   C+ G V EA  +   M  +G    + T   ++ +L R G   +A KF+
Sbjct: 1267 YSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFL 1322



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 10/229 (4%)

Query: 67   FNTANTFNFITNTENSLSVLSDLCRTLAR-LDKG-FPRKSAYDTLIGRLCKLKKIDEALR 124
            F   +T+N I N  N  S   +    L   L+ G  P+ + Y TLI  +C++  I  A +
Sbjct: 1647 FPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFK 1706

Query: 125  VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
            + D M   GFG   +    ++  L    + E+A  +++ M  +R+ P +  +  L+  +C
Sbjct: 1707 LKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFC 1766

Query: 185  FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
                +     +   ME   L  D   Y+ L++G C  G    AF L   M         +
Sbjct: 1767 RDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNIT 1826

Query: 245  TYAHVMGALLRLGYYAQAVKF--------VMVCGGRDIKLDTELFGSLG 285
            TYA ++ A+       Q  K         ++  GG    LD EL  ++G
Sbjct: 1827 TYAVLVDAISAANNLIQGEKLLTDLQERGLISWGGSTQHLDKELTVAMG 1875



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 82/210 (39%), Gaps = 21/210 (10%)

Query: 41   LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF 100
            ++N  GH  D  T   L++   RD     A  F               LC  ++R+    
Sbjct: 1289 VMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKF---------------LCH-MSRIGL-V 1331

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P    YD +I     +     A    D M + G   S  T+  +L  L +G  + EA   
Sbjct: 1332 PNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKF 1391

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +  +  I  + D   YN LL   C  GNL     +  KM +  +  D+ TY +L+ G CR
Sbjct: 1392 LNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCR 1451

Query: 221  AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
             G+   A  L    +  G+  L+    HVM
Sbjct: 1452 KGKAVTAVCLFGTAM--GRGTLFPN--HVM 1477



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 76/206 (36%), Gaps = 35/206 (16%)

Query: 102  RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
             K  Y TLI   C+   + EA++V  +M   G G    T + ++S L R  ++ EA   +
Sbjct: 1263 NKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFL 1322

Query: 162  EVMKEIRVSPDLTAYNYLLTAY-----------------------------------CFK 186
              M  I + P+   Y+ ++  Y                                   C  
Sbjct: 1323 CHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKG 1382

Query: 187  GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
            GNL      L ++       D+  Y+ L+   C++G + EA  L  +MV +       TY
Sbjct: 1383 GNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTY 1442

Query: 247  AHVMGALLRLGYYAQAVKFVMVCGGR 272
            + ++  L R G    AV       GR
Sbjct: 1443 SSLLTGLCRKGKAVTAVCLFGTAMGR 1468



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 67/166 (40%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P    Y +LI   C++  I  A  ++  M   G  L+ I +  ++    +   + EA  +
Sbjct: 1227 PDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKV 1286

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              VM       D    N L+++ C  G L      L  M    L  ++ TYD ++ G   
Sbjct: 1287 YAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGS 1346

Query: 221  AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             G    AF     M+  GQ   + TY  ++  L + G   +A KF+
Sbjct: 1347 IGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFL 1392



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 81/205 (39%)

Query: 100  FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            FP    Y  L+  L K      A    + M + G     + F+ I+   +R  +M +A  
Sbjct: 1472 FPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKAND 1531

Query: 160  LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
                M+   V P+L  YN LL  +  K  L     +   M  E +  D  T+ +L+LG  
Sbjct: 1532 FFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLS 1591

Query: 220  RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            ++G  +    LL +M+ +G      T+  ++      G   +A   V       +  D +
Sbjct: 1592 KSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRD 1651

Query: 280  LFGSLGSKLIGLERFNEANFILKEM 304
             +  + + L     F E+  +L EM
Sbjct: 1652 TYNHIFNGLNKKSAFRESTVVLHEM 1676



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 4/156 (2%)

Query: 100  FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            FP K  + +LI  L K    D  ++++  M   G      TF+ +++  +   +M +A+ 
Sbjct: 1577 FPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFD 1636

Query: 160  LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            L+  M  + V PD   YN++      K     ++ VL +M E  +      Y  L+ G C
Sbjct: 1637 LVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMC 1696

Query: 220  RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            R G ++ AF    ++ D+ +++ + ++     A++R
Sbjct: 1697 RVGDIQGAF----KLKDEMEALGFGSHEVAESAMVR 1728



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 6/207 (2%)

Query: 106  YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
            ++ LI +  +  K+ +A  +V+ M   G      T++ I + L +     E+  ++  M 
Sbjct: 1618 FNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEML 1677

Query: 166  EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            E  V P    Y  L+   C  G++     +  +ME    G+      A+V G    G+ E
Sbjct: 1678 ENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTE 1737

Query: 226  EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VM-VCGGRDIKLDTELFG 282
            +A ++L  M+        +T+  +M    R    A+A+K   VM +CG   +KLD   + 
Sbjct: 1738 DAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCG---LKLDVVAYN 1794

Query: 283  SLGSKLIGLERFNEANFILKEMNKRDL 309
             L   +        A  + +EM  RDL
Sbjct: 1795 VLIMGMCANGDSAAAFELYEEMRHRDL 1821


>gi|242094080|ref|XP_002437530.1| hypothetical protein SORBIDRAFT_10g028820 [Sorghum bicolor]
 gi|241915753|gb|EER88897.1| hypothetical protein SORBIDRAFT_10g028820 [Sorghum bicolor]
          Length = 540

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 6/218 (2%)

Query: 40  DLVNAAGHERDLETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSVLSDLCRTLARL-D 97
           D +   GH R     R +   R  D  +      +N + N  +    L  + +  A + D
Sbjct: 155 DALCKEGHPR--AAARLVAQVRREDGGWAPDVRVYNILLNGWSRARRLDKVEKLWAAMRD 212

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +G  P    Y T I   C +++ D+A+ ++D M E G   + +T +PI+  L +  R  +
Sbjct: 213 EGVRPTVVTYGTFIDAYCVMRRPDQAMTLLDQMREEGIQANLLTCNPIVYALAQAGRFGD 272

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  ++E      VSP+++ +N L+  YC  G+L   SGVLK M    +   ARTY+   +
Sbjct: 273 AHKVLEKFPLYGVSPNISTFNSLVFGYCKHGDLAGASGVLKAMLGRGISPTARTYNYFFM 332

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
              R   +E    L  +MV +G +    TY H++  +L
Sbjct: 333 VFSRNRSIELGMNLYVKMVSNGYAPDQFTY-HLLIKML 369



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 77/189 (40%), Gaps = 6/189 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S +++L+   CK   +  A  V+  M   G   +A T++    V +R + +E    L
Sbjct: 287 PNISTFNSLVFGYCKHGDLAGASGVLKAMLGRGISPTARTYNYFFMVFSRNRSIELGMNL 346

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M     +PD   Y+ L+   C    L  T  +L++M       D  T   L+   CR
Sbjct: 347 YVKMVSNGYAPDQFTYHLLIKMLCEANRLELTLQMLQEMRNNGFEPDQATSTMLIHLLCR 406

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG--RDIKLDT 278
               EEAF    +M + G    Y TY  +M  L RLG     VK V       R +   T
Sbjct: 407 RHHFEEAFAEFEQMFERGIVPQYITYRMLMKELKRLGL----VKLVQKLADLMRSVPHST 462

Query: 279 ELFGSLGSK 287
           +L GS   K
Sbjct: 463 KLPGSYRDK 471



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 13/212 (6%)

Query: 68  NTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLI---GRLCKLKKIDEALR 124
           + A  F F+       +V SD        D     ++A   LI     LCK      A R
Sbjct: 117 SAARAFRFLQRHPGCYAVESD--------DGAPAAEAAVSPLILTVDALCKEGHPRAAAR 168

Query: 125 VVDIM--AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           +V  +   +GG+      ++ +L+  +R +R+++   L   M++  V P +  Y   + A
Sbjct: 169 LVAQVRREDGGWAPDVRVYNILLNGWSRARRLDKVEKLWAAMRDEGVRPTVVTYGTFIDA 228

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           YC          +L +M EE + A+  T + +V    +AGR  +A  +L +    G S  
Sbjct: 229 YCVMRRPDQAMTLLDQMREEGIQANLLTCNPIVYALAQAGRFGDAHKVLEKFPLYGVSPN 288

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
            ST+  ++    + G  A A   +    GR I
Sbjct: 289 ISTFNSLVFGYCKHGDLAGASGVLKAMLGRGI 320


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 75/146 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    YD LI   CK+ K+DEA  V   M+E G+G +  T+  ++  L + KR++ A  +
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKV 728

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E   +P++  Y  ++   C  G       ++  MEE+    +  TY A++ G  +
Sbjct: 729 LSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
           AG+V++   L+R+M   G +  + TY
Sbjct: 789 AGKVDKCLELMRQMGAKGCAPNFVTY 814



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 18/292 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L++A    R + +   L      + C     T+  + +       +   C+ 
Sbjct: 548 PNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 93  LARL---------------DKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
            AR+               D G    P    Y  L+  LCK  K+ EA  ++D+M+  G 
Sbjct: 608 YARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
             + I +  ++    +  +++EA  +   M E    P++  Y+ L+        L     
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALK 727

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           VL +M E     +   Y  ++ G C+ G+ +EA+ L+  M + G      TY  ++    
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFG 787

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           + G   + ++ +   G +    +   +  L +        ++A+ +L EM +
Sbjct: 788 KAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 98/229 (42%), Gaps = 17/229 (7%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + KGF P  S Y  +IG LC   K+D A  + + M          T+  ++    +   +
Sbjct: 472 MSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLL 531

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A    + M     +P++  Y  L+ AY     +++ + + + M  E    +  TY AL
Sbjct: 532 QQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTAL 591

Query: 215 VLGACRAGRVEEAFVLLRRM--------------VDDG--QSVLYSTYAHVMGALLRLGY 258
           + G C++G++E+A  +  RM              +DDG  +     TY  ++  L +   
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHK 651

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +A   + V      + +  ++ +L      + + +EA  +  +M++R
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSER 700



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 66/153 (43%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC   K ++A  ++  M   GF     T+  ++ +L    +++ A+ L E MK   V PD
Sbjct: 455 LCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPD 514

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  L+ ++C  G L        +M  +    +  TY AL+    +A ++  A  L  
Sbjct: 515 VFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFE 574

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            M+ +G      TY  ++    + G   +A + 
Sbjct: 575 MMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 35/233 (15%)

Query: 48  ERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL----------- 96
           + D E +  LLN   R CC N              L  L DL    +RL           
Sbjct: 190 DEDKEILGKLLNVLIRKCCRN-----GLWNVALEELGRLKDLGYKPSRLTYNALVRVFLE 244

Query: 97  ---------------DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
                          D GF          +  LCK  +  EAL +++   +  F L  + 
Sbjct: 245 ADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KEEFKLDTVI 301

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  ++S L      EEA   +  M+     P++  Y  LL     K  L     +L  M 
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            E      R +++L+   CR+G    A+ LL++M D G    Y  Y  ++G +
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI 414



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 12/233 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+     +R L   + +L+    + C+ +   FN + +        S   + 
Sbjct: 332 PNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKL 391

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG--------LSAITFH 142
           L ++ D G  P    Y+ LIG +C  +K+  +L V++ +AE  +G        L+ +   
Sbjct: 392 LKKMGDCGCQPGYVVYNILIGGICGNEKL-PSLDVLE-LAEKAYGEMLDAHVVLNKVNVS 449

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +   L    + E+A+ ++  M      PD + Y+ ++   C    +     + ++M+  
Sbjct: 450 NLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN 509

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  D  TY  L+   C+ G +++A      MV DG +    TY  ++ A L+
Sbjct: 510 HVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLK 562



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C    +D+A +++D M +  +      +  ++    R      + GL
Sbjct: 809 PNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNR--EFIISLGL 866

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE--EKLGADARTYDALVLGA 218
           ++ + E    P + AY  L+ ++C  G L     + K+M        AD   Y +L+   
Sbjct: 867 LDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESL 926

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             A +V++AF L   M+  G     S + +++  L+R+  + +A++ 
Sbjct: 927 SLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQL 973



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 41/189 (21%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LC+    +EA+  +  M       + +T+  +L    R +++     ++ +M 
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA------- 218
                P    +N L+ AYC  G+ +    +LKKM +         Y+ L+ G        
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421

Query: 219 ----------------------------------CRAGRVEEAFVLLRRMVDDGQSVLYS 244
                                             C AG+ E+A+ ++R M+  G     S
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481

Query: 245 TYAHVMGAL 253
           TY+ V+G L
Sbjct: 482 TYSKVIGLL 490



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 24/224 (10%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           FTK       P    Y  L++    ++ L+    +L++   + C       N I  TE  
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSC-----APNVIIYTE-- 746

Query: 83  LSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
             ++  LC+ + + D+ +            P    Y  +I    K  K+D+ L ++  M 
Sbjct: 747 --MIDGLCK-VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMG 803

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   + +T+  +++       +++A  L++ MK+      +  Y  ++    F     
Sbjct: 804 AKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEG--FNREFI 861

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            + G+L ++ E         Y  L+   C+AGR+E A  L + M
Sbjct: 862 ISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEM 905



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 13/177 (7%)

Query: 133 GFGLSAITFHPILSVLTRG--KRMEEAWGLMEVMKEIRVSPDLTA---YNYLLTAYCFKG 187
           G+G +   +H +L VL  G   R+ E     + ++EIR           N L+   C  G
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPE-----QFLREIRDEDKEILGKLLNVLIRKCCRNG 211

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
                   L ++++        TY+ALV     A R++ A+++ R M D G ++   T  
Sbjct: 212 LWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLG 271

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +  L + G + +A+  +      + KLDT ++  + S L     F EA   L  M
Sbjct: 272 CFVHLLCKAGRWREALALI---EKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRM 325


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 1/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y+TLI  LCK  ++     +  +I +        +T+  I+S   +  +M+EA  
Sbjct: 211 PDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASN 270

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L E M    + P++  +N L+  +   GN+     + +KM      AD  T+ +L+ G C
Sbjct: 271 LFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYC 330

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           RAG+V         M     S    TYA ++ AL +     +A  F+       I     
Sbjct: 331 RAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPF 390

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
           ++  +          +E N ILKEM ++
Sbjct: 391 MYNPVIDGFCKAGNVDEGNVILKEMEEK 418



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 78/160 (48%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            + +LI   C+  +++  L+  ++M       +  T+  +++ L +  R+ EA   +  +
Sbjct: 321 TFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQI 380

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K   + P    YN ++  +C  GN+   + +LK+MEE++   D  T+  L++G C  GR+
Sbjct: 381 KNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRM 440

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            EA  +  RM+    +    T   ++  LL+ G   +A +
Sbjct: 441 FEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYR 480



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 92/213 (43%), Gaps = 7/213 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI  LC++  +D A  V   M   G     +T++ +++ L +   ++     
Sbjct: 176 PDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRG--- 232

Query: 161 MEVMKEIR----VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
            E+ KEI+     SPD+  Y  +++ +C  G +   S + ++M    +  +  T++ L+ 
Sbjct: 233 CELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLID 292

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G  + G + EA  + R+M     S    T+  ++    R G     +KF  V   R++  
Sbjct: 293 GFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSP 352

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
               +  L + L    R NEA   L ++    +
Sbjct: 353 TVYTYAVLINALCKENRLNEARDFLGQIKNSSI 385



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 61/137 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK  +++EA   +  +           ++P++    +   ++E   +
Sbjct: 352 PTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVI 411

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+E R  PD   +  L+  +C KG +     +  +M   +   D  T ++L+    +
Sbjct: 412 LKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLK 471

Query: 221 AGRVEEAFVLLRRMVDD 237
           AG   EA+ + +  ++D
Sbjct: 472 AGMPNEAYRIRKMALED 488


>gi|125526348|gb|EAY74462.1| hypothetical protein OsI_02350 [Oryza sativa Indica Group]
          Length = 596

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  LC+ +  + A   ++ + E GF    +T++ +LS   R  R+++A  L
Sbjct: 208 PNAHTFNILVAALCRGEDAERAQGFLEELEEQGFEPDGVTYNTLLSGYCRRGRLQDALHL 267

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +VM   RV PDL ++  ++ A C  G +     +  +M +  L  DA  Y  L+ G C 
Sbjct: 268 FDVMPYRRVQPDLVSHTVVMDALCKAGRVRDARRMFDRMIQSGLSPDAVAYSVLIAGYCN 327

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
            GR+ EA  LL  MV  G S
Sbjct: 328 EGRLREARFLLMEMVGCGFS 347



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%)

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           +MA  G   +A TF+ +++ L RG+  E A G +E ++E    PD   YN LL+ YC +G
Sbjct: 200 VMARAGVRPNAHTFNILVAALCRGEDAERAQGFLEELEEQGFEPDGVTYNTLLSGYCRRG 259

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
            L     +   M   ++  D  ++  ++   C+AGRV +A  +  RM+  G S
Sbjct: 260 RLQDALHLFDVMPYRRVQPDLVSHTVVMDALCKAGRVRDARRMFDRMIQSGLS 312



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 15/184 (8%)

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           +R  R ++ W    VM    V P+   +N L+ A C   +     G L+++EE+    D 
Sbjct: 186 SRAGRFDDLWAARAVMARAGVRPNAHTFNILVAALCRGEDAERAQGFLEELEEQGFEPDG 245

Query: 209 RTYDALVLGACRAGRVEEAFVLL-----RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            TY+ L+ G CR GR+++A  L      RR+  D       ++  VM AL + G    A 
Sbjct: 246 VTYNTLLSGYCRRGRLQDALHLFDVMPYRRVQPD-----LVSHTVVMDALCKAGRVRDAR 300

Query: 264 KFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM-GFKLRDYYE 320
           +    M+  G  +  D   +  L +      R  EA F+L EM        GF L+   E
Sbjct: 301 RMFDRMIQSG--LSPDAVAYSVLIAGYCNEGRLREARFLLMEMVGCGFSSEGFALKVVVE 358

Query: 321 INVK 324
            +VK
Sbjct: 359 SHVK 362



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 9/232 (3%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN-TFNFITNTENSL 83
           +SG  PD   +  Y  L+    +E  L   R+LL +    C F++       +  +    
Sbjct: 308 QSGLSPD---AVAYSVLIAGYCNEGRLREARFLLMEMV-GCGFSSEGFALKVVVESHVKF 363

Query: 84  SVLSDLCRTLARLDKG---FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           S L      +A + K     P +S Y  LIG LC+  + + A  ++  M E G   S   
Sbjct: 364 SKLLTCLNMVAPIRKHGVVIPSQS-YSCLIGALCEDMRPNAARGLLHWMIEDGHSPSLAI 422

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ I+    +   +EEA  +   M    V  D   Y  L+T +C  G       ++ +M 
Sbjct: 423 YNMIIECFCQCDIVEEALDVKVEMISREVRLDFNTYRALITCFCRLGRSLDGELIMAEMI 482

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           E     +     ALV G C+ G +  A ++LR  V D       +Y  +M A
Sbjct: 483 ESGFQPNEAICSALVCGFCKEGALNRAELILRAFVLDFHVHCNESYNALMRA 534


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LIG  C   K+D AL   D M E G  ++  T++ ++  L    R  EA+ L
Sbjct: 589 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 648

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    ++PD+  YN L+  +C +GN+     + + M    + A   TY AL+    +
Sbjct: 649 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSK 708

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+E   L    V  G       Y  ++ +    G   +A + +     + I  D   
Sbjct: 709 KGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVT 768

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L   L  L R +EA  ++ EM +R ++
Sbjct: 769 YNTLMRGLCLLGRVDEARKLIDEMTERGIQ 798



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 75/148 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI        ID A  ++  M +       +T++ ++  L    R++EA  L++ M 
Sbjct: 734 YNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMT 793

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  + PDL  YN L++ Y  KG++     +  +M  +       TY+AL+ G C+ G+ +
Sbjct: 794 ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 853

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +A  +++ MV++G +   STY  ++  L
Sbjct: 854 DAENMVKEMVENGITPDDSTYISLIEGL 881



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P +  Y T+I   CK+ ++DEA++V D ++ +G     A+ ++ ++       +++ A  
Sbjct: 553 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALL 612

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M E  V+  +  YN L+ A    G  T    ++++M  + L  D  TY+ L+ G C
Sbjct: 613 YRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHC 672

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G V++A  +   M   G      TY  ++ AL + G   +  K       R I+ D  
Sbjct: 673 KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLV 732

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
           L+ +L +        + A  I+ EM K+
Sbjct: 733 LYNALINSHSTSGNIDRAFEIMGEMEKK 760



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 73/161 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  L K  ++ E  ++ D     G     + ++ +++  +    ++ A+ +M  M+
Sbjct: 699 YTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEME 758

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + R++PD   YN L+   C  G +     ++ +M E  +  D  TY+ L+ G    G V+
Sbjct: 759 KKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVK 818

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A  +   M++ G +    TY  ++  L + G    A   V
Sbjct: 819 DALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 859


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LCK  +++EA+R++  M   G  +  + +  ++S       ++    L
Sbjct: 43  PNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKAL 102

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  +SP++  Y+ L+  +C KG     + VL  M E  +  D  TY  ++ G C+
Sbjct: 103 FDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCK 162

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            GR  +A  L   M + G+     TY  ++  L + G    A K 
Sbjct: 163 DGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKI 207



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y+T+I  LCK K++++A+ ++  M       ++ T+  ++  L +  R+EEA  
Sbjct: 7   LPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMR 66

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  MK   +  D+  Y+ L++ +C KG L     +  +M E+ +  +   Y  L+ G C
Sbjct: 67  LLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFC 126

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           + G   EA  +L  M + G      TY  ++G L + G   +A+
Sbjct: 127 KKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKAL 170



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 11/223 (4%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KG  P    Y  LI   CK     EA  V+  M E G      T+  ++  L +  R 
Sbjct: 107 LEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRA 166

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  L ++M E    P    YN L+   C +G +     + + M E+    +  +Y+ L
Sbjct: 167 RKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTL 226

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           ++G C  G+++EA  L   +++DG  V     T+  V+  L + G   +AV+        
Sbjct: 227 IMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIY------ 280

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMN--KRDLKMGF 313
           D  ++   FG+L +  I +  + ++  I K M   KR  K+G 
Sbjct: 281 DTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGL 323



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 97/240 (40%), Gaps = 12/240 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSV 85
           P    Y+ ++N    E+ LE    LL +     C   + T+  + +        E ++ +
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L ++ R    +D        Y TLI   C    +D    + D M E G   + + +  ++
Sbjct: 68  LGEMKRKGLEVDV-----VVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLI 122

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           +   +     EA  ++  M E  + PD+  Y  ++   C  G       +   M E+   
Sbjct: 123 NGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEE 182

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
               TY+ L+ G C+ G + +AF +   M++ G+ +   +Y  ++  L   G   +A+K 
Sbjct: 183 PSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKL 242



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 61/138 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  LCK   +++A R+   M E       I+F+ ++    +   +  A  L
Sbjct: 360 PTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKEL 419

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+++ ++PD   Y+  +      G +    G    M    +  D   YD+L+ G   
Sbjct: 420 LNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGL 479

Query: 221 AGRVEEAFVLLRRMVDDG 238
              +EE   LLR+M D G
Sbjct: 480 NDEIEEVINLLRQMADMG 497



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 106/279 (37%), Gaps = 57/279 (20%)

Query: 40  DLVNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFITNTENSLSVLS------DLCRT 92
           DL+   G E    T   L+N   ++ C   A   F  +      L V+S       LC  
Sbjct: 174 DLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNN 233

Query: 93  LARLDKGF--------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE-GGFG-- 135
             +LD+                P    ++T+I  LCK  ++D+A+ + D M E G FG  
Sbjct: 234 -GKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNL 292

Query: 136 --------------------------------LSAITFHPILSVLTRGKRMEEAWGLMEV 163
                                            S+ T+  ++    +   +  A GL   
Sbjct: 293 FTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSR 352

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           MK   +SP L  YN L+ + C + +L     + ++M+E     D  +++ ++ G  +AG 
Sbjct: 353 MKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGD 412

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +  A  LL  M   G +    TY+  +  L +LG   +A
Sbjct: 413 IHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEA 451



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 64/138 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  +I   CK+  ++ A  +   M   G   +   ++ +++ L +   +E+A  L
Sbjct: 325 PSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRL 384

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + MKE    PD  ++N ++      G++ +   +L  M++  L  DA TY + +    +
Sbjct: 385 FQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSK 444

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G++EEA      M+  G
Sbjct: 445 LGQMEEAKGAFDSMIASG 462



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%)

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           MK I + PD+ +YN ++   C +  L     +L +ME      ++ TY  L+ G C+ GR
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           VEEA  LL  M   G  V    Y+ ++      G
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKG 94



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 4/187 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI---TNTENSLSVLSDL 89
           PT   Y+ L+ +   E  LE  R L  +     C     +FN +   T     +    +L
Sbjct: 360 PTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKEL 419

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              + ++    P    Y + I RL KL +++EA    D M   G       +  ++    
Sbjct: 420 LNDMQQMGLT-PDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFG 478

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               +EE   L+  M ++ V  DL   N +LT  C          +L     E  G  + 
Sbjct: 479 LNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSAEHLHVMELLPNFSSESSGGTSI 538

Query: 210 TYDALVL 216
           + D L++
Sbjct: 539 SCDKLLM 545


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ LI +LCK ++ D+A R+   MA  G   + +T+  ++  L +   +E+A  L
Sbjct: 359 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 418

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M++  +   +  YN L+  YC +G+L    G+L  M +E L   A +Y  L+ G CR
Sbjct: 419 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 478

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G +     L R M + G
Sbjct: 479 NGDLSSCMELHREMAERG 496



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 73/136 (53%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y  LI  LCK   I++AL + D M + G  ++   ++ +++   +   ++ A GL
Sbjct: 394 PNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGL 453

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  ++P   +Y+ L+   C  G+L++   + ++M E  +  +  T+ AL+ G C+
Sbjct: 454 LSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCK 513

Query: 221 AGRVEEAFVLLRRMVD 236
             +++EA  L  +M+D
Sbjct: 514 DKKMDEAARLFDKMID 529



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TL+   C++++++ ALR+   M   GF  S      ++  L + + +EEA+ L   + 
Sbjct: 294 YRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLG 353

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           ++ + P++ AYN L+   C          + K+M    L  +  TY  L+   C+ G +E
Sbjct: 354 DLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIE 413

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +A  L  +M D G  V    Y  ++    + G
Sbjct: 414 DALCLFDKMRDKGIKVTVYPYNSLINGYCKQG 445



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E +L +  D+ R       GF P ++    +I  L K + ++EA  +   + + G   + 
Sbjct: 308 EMALRITHDMIRL------GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 361

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
             ++ ++  L + +R ++A  L + M    + P+   Y  L+ A C +G +     +  K
Sbjct: 362 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 421

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M ++ +      Y++L+ G C+ G ++ A  LL  MV +G +   ++Y+ ++  L R G 
Sbjct: 422 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 481

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  ++       R I  +   F +L +     ++ +EA  +  +M
Sbjct: 482 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKM 527



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDLCRTLA 94
           Y+ L+N    +  L+  R LL+   ++    TA +++ +         LS   +L R +A
Sbjct: 434 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA 493

Query: 95  RLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
             ++G    +  +  LI   CK KK+DEA R+ D M +     + +TF+ ++        
Sbjct: 494 --ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGN 551

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           + +A+ L + M E+ + PD   Y  L++  C    ++  +  +  +E      +  +  A
Sbjct: 552 IRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTA 611

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L+ G  R GR  E + L   M   G  +   ++  ++ A L+
Sbjct: 612 LLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALK 653



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 35/221 (15%)

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           V+ +    G  ++  T   IL  L + ++   A  L + M +  V  D   Y   + AYC
Sbjct: 173 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYC 232

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSV 241
              NL    G++ +ME E + A A  Y+ L+ G C+  RV+EA  +   MV+ G     V
Sbjct: 233 ESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEV 292

Query: 242 LYSTYAH-------------VMGALLRLGYYAQAVK-----------------FVMVCGG 271
            Y T  +             +   ++RLG+                       F + C  
Sbjct: 293 TYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKL 352

Query: 272 RDIKLDTELFG--SLGSKLIGLERFNEANFILKEMNKRDLK 310
            D+ +   +F   +L  KL   ERF++A+ + KEM  R L+
Sbjct: 353 GDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLE 393



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +++ LI  LCK  KI EA+ ++  + E GF    I++  I+  L +   + +A+ L   M
Sbjct: 782 SFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 841

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               + PD+ AYN  +      G      G+   M    +  +  TY AL+ G       
Sbjct: 842 LYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG------- 894

Query: 225 EEAFVLLRRMVDDGQSVLYST 245
                 +  MV  GQ++L +T
Sbjct: 895 ------ISLMVSKGQALLLTT 909



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 107/260 (41%), Gaps = 24/260 (9%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           +S ++ R   + G  PD+    +Y  +++A   E   E +   LN      C++      
Sbjct: 659 KSCVLFREMKEQGVKPDD---IFYTCMIDALSKE---ENMIQALN------CWDQMVVDG 706

Query: 75  FITNTENSLSVLSDLCRT---------LARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL 123
           +  NT     ++++LC++            +  G   P K  Y+  +        +++A 
Sbjct: 707 YSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAK 766

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +   M +G    S ++F+ ++  L +  +++EA  LM  + E   SPD  +Y+ ++   
Sbjct: 767 DLHSAMLQGHLA-SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHEL 825

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C  G++     +  +M  + L  D   Y+  +      G  ++A  +   M+  G    +
Sbjct: 826 CKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNW 885

Query: 244 STYAHVMGALLRLGYYAQAV 263
            TY  ++  +  +    QA+
Sbjct: 886 DTYRALLSGISLMVSKGQAL 905



 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 18/198 (9%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           YD +V   G + D  T R L++        + AN   F+ + ENS +VL++   +L  L 
Sbjct: 559 YDQMVEM-GLKPDNYTYRSLISGLCLTSGVSKAN--EFVADLENSYAVLNNF--SLTALL 613

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
            GF R+              +  E   + D MA  G  L  ++F  I+    +    E++
Sbjct: 614 YGFFREG-------------RFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKS 660

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L   MKE  V PD   Y  ++ A   + N+        +M  +    +  T+  L+  
Sbjct: 661 CVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINN 720

Query: 218 ACRAGRVEEAFVLLRRMV 235
            C++G +  A +L + M+
Sbjct: 721 LCKSGYLGSAELLCKEML 738



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 84/204 (41%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+  LCK  ++ EA+ V ++M   G     +T+  ++    R + +E A  +   M 
Sbjct: 259 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMI 318

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            +   P     ++++     K  +     +  K+ +  +  +   Y+AL+   C+  R +
Sbjct: 319 RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFD 378

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  L + M   G      TYA ++ AL + G    A+        + IK+    + SL 
Sbjct: 379 DADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLI 438

Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
           +        + A  +L  M K  L
Sbjct: 439 NGYCKQGSLDRARGLLSGMVKEGL 462


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 3/220 (1%)

Query: 87  SDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           ++ C  LA +  +GF P   AY   I    K+K +D+AL +   +   G+    + ++ +
Sbjct: 539 AEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTL 598

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++   + KR+ EA  +++ M    + P +  YN L+  +C  G++      L +M  ++ 
Sbjct: 599 INGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKER 658

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +  TY  L+ G C AGR ++A  L   M   G S    ++  ++  L + G+   A+ 
Sbjct: 659 EPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALL 718

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +    G R+   DT ++ +L +  I  +    A  ILKEM
Sbjct: 719 YFREMGERETP-DTIVYVALITSFISNKNPTLAFEILKEM 757



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 117/278 (42%), Gaps = 12/278 (4%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRA----RDCCFNTANTFNFITNTENSLSVLSDLCRTL 93
           Y++L++   +   LE    LL +      R   F   + F  +   E+    L D+ R +
Sbjct: 455 YNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGAL-DMVREM 513

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
            R+    P    Y  L+ +LCK K+  EA   +  M   GF    + +   +    + K 
Sbjct: 514 -RVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKA 572

Query: 154 MEEAWGLMEVMKEIRV---SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           +++A   +E+ ++I      PD+ AYN L+  +C    ++    +L +M  + L     T
Sbjct: 573 VDQA---LEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVT 629

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ L+ G C+ G +++AF  L RMV   +     TY  ++  L   G    A+       
Sbjct: 630 YNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMR 689

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           G+    +   F +L   L      + A    +EM +R+
Sbjct: 690 GKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERE 727



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 19/273 (6%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVLSDLCRTLARL 96
           Y+ ++N   + + ++   YLL     D         N+  N E N   ++ ++ R     
Sbjct: 369 YNSVLNGLVNGKSVDKAYYLLXAMTGD---------NYTDNFEVNKFFMVKEMVR----- 414

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
               P  +++  +I  LC   K+D AL +   M   G   + + ++ ++  L+   R+EE
Sbjct: 415 ----PXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEE 470

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
            + L++ MK     P    +N +    C + ++T    ++++M         + Y  LV 
Sbjct: 471 CYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVK 530

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
             C+  R  EA   L  MV +G       Y+  +   +++    QA++       R    
Sbjct: 531 QLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCP 590

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           D   + +L +    ++R +EA+ IL EM  + L
Sbjct: 591 DVVAYNTLINGFCKVKRVSEAHDILDEMVAKGL 623



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 108/234 (46%), Gaps = 20/234 (8%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL----TRG 151
           D G+ P K    +++   C  +K D+AL V + +    +G   +  H +LS+L    ++ 
Sbjct: 187 DSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEI----YGRGWVDGH-VLSILVLTFSKC 241

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +++A+ L+E M+++ +  +   +  L+  +  +  +     + KKM++     D   Y
Sbjct: 242 GEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVY 301

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           DAL+ G C    +E+A  LL  M + G          ++  L  + Y ++ V    +   
Sbjct: 302 DALIGGLCAKKEIEKALHLLSEMKELG----IDPDIQILSKL--IPYCSEEVDIYRLIEE 355

Query: 272 RDIKLDTE----LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
           R   LDTE    L+ S+ + L+  +  ++A ++L  M   +    F++  ++ +
Sbjct: 356 RLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMV 409


>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
          Length = 567

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 109/231 (47%), Gaps = 4/231 (1%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           NS+ +  +    + + +   P  S Y T+I   CK+  I+ A +V D+M       + + 
Sbjct: 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMT---VKPNLLA 228

Query: 141 FHPILSVLTRGKRMEEAWGLME-VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           ++ +++   +   ME A  + + +M      P+   Y  L+  YC KG L      + +M
Sbjct: 229 YNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKCMNEM 288

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
                  +  TY+A++ G C  GRV+EA +L+ +M  +G     ST+  ++  L  +G +
Sbjct: 289 MNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF 348

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            QAV ++      ++  D + +  + +    + + +EA  +LKEM  R LK
Sbjct: 349 DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK 399



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 77/164 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y TLI   CK  +++EA + ++ M   G   + +T++ ++  L    R++EA  
Sbjct: 259 LPNHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKM 318

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           LM  M+      +++ +  +L   C  G      G L+ + E  +  D ++Y+ ++ G C
Sbjct: 319 LMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC 378

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           + G+ +EA  LL+ M   G      ++  V   L+  G   +A+
Sbjct: 379 KIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAI 422



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 1/171 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ +I   CK+ K DEA+ ++  M   G   +  +F+ +  +L     ++ A  L
Sbjct: 365 PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILL 424

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCF-KGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ M ++   P+  +YN ++   C  KG +     ++ +M       D   Y  L+ G C
Sbjct: 425 LKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYC 484

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
             G VE    +   MV     +   +++ ++  L   G   +A K    C 
Sbjct: 485 EEGNVENVMQIAHEMVTKKYVIGLESFSVLVKQLCAKGKVTEAEKLFDTCS 535



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 1/214 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL-SAITFHPILSVLTRGKRMEEAWG 159
           P   AY+T+I   CK   ++ A  V D M  G   L + +T+  ++    +   +EEA  
Sbjct: 224 PNLLAYNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKK 283

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            M  M      P+   YN ++   C  G +     ++ KM       +  T+ +++ G C
Sbjct: 284 CMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC 343

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             G+ ++A   LR +++   +    +Y  V+    ++G   +A+  +     R +K    
Sbjct: 344 VVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVF 403

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
            F ++   L+     + A  +LK+M + D    F
Sbjct: 404 SFNAVFRILVENGELDRAILLLKQMPQMDCLPNF 437



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 5/207 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK--RARDCCFNTANTFNFITNTENSLSVLSDL 89
           +P    Y+ ++N    + D+E+ R + ++     DC  N   T+  + +       L + 
Sbjct: 223 KPNLLAYNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHV-TYTTLIDGYCKKGELEEA 281

Query: 90  CRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            + +  + ++G  P +  Y+ +I  LC   ++DEA  ++  M   GF  +  T   +L  
Sbjct: 282 KKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG 341

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    + ++A G +  + E  ++PD+ +Y  ++  +C  G       +LK+M    L   
Sbjct: 342 LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT 401

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRM 234
             +++A+       G ++ A +LL++M
Sbjct: 402 VFSFNAVFRILVENGELDRAILLLKQM 428


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 98/205 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T++ RLCK + ++EA+ +   M   G   + +T+  ++  L    R +EA+GL
Sbjct: 229 PDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGL 288

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK   + PDL A++ L+   C +G ++    +LK M E  +  D  TY+ L+ G C 
Sbjct: 289 LNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCL 348

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V EA  +   M+  G+     +++ ++    +     +A +       R +  DT  
Sbjct: 349 RMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVS 408

Query: 281 FGSLGSKLIGLERFNEANFILKEMN 305
           + +L S L    R  EA  + K+M+
Sbjct: 409 YNTLISGLCQARRPLEAEELFKDMH 433



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 116/281 (41%), Gaps = 2/281 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ +V+    +R +    ++  K        T  T+  + +   +L    +   
Sbjct: 228 EPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFG 287

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L  +  G   P   A+  LI  +CK  ++ EA  ++  M E G      T++ +++   
Sbjct: 288 LLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYC 347

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               + EA  + EVM      PD+ +++ L+  YC    +     +  +M    L  D  
Sbjct: 348 LRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTV 407

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           +Y+ L+ G C+A R  EA  L + M  +G      TY+ ++  L + GY  QA+      
Sbjct: 408 SYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAM 467

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               +K D   +  +   +    +F +A  +  E++ + L+
Sbjct: 468 ENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQ 508



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 65/141 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y+TLI  LC+ ++  EA  +   M   G+  + +T+  +L  L++   +++A G
Sbjct: 403 IPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMG 462

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M+   + PDL  YN ++   C  G       +  ++  + L  +       + G C
Sbjct: 463 LFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVC 522

Query: 220 RAGRVEEAFVLLRRMVDDGQS 240
           + G ++EA    R+M  D  S
Sbjct: 523 KGGLLDEAHKAFRQMEKDDCS 543



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 12/165 (7%)

Query: 82  SLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           SL++L +    L  +D GF            P    + TLI   C   KI  A+ + D+M
Sbjct: 128 SLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVM 187

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G+  +  ++  I+  L R  +  E   L+E MK +   PD+  YN ++   C    +
Sbjct: 188 VARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLV 247

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
                +  KM+   +     TY +L+ G    GR +EAF LL  M
Sbjct: 248 NEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEM 292



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 82/198 (41%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           LI   C+L  +D    V+  + + G   + ITF  +++      ++  A  L +VM    
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             P++ +Y+ ++   C  G  T    +L+ M+      D   Y+ +V   C+   V EA 
Sbjct: 192 YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAV 251

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            +  +M   G      TY  ++  L  LG + +A   +    G +I  D   F  L   +
Sbjct: 252 HIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIM 311

Query: 289 IGLERFNEANFILKEMNK 306
                 +EA  ILK M +
Sbjct: 312 CKEGEVSEARVILKTMTE 329



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 80/189 (42%)

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
            + I++AL   + M       S + F  + S L R K  +    L + M+   +S D+ +
Sbjct: 69  FRNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLS 128

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
              L+  +C   ++     VL K+ +  L  +  T+  L+ G C  G++  A  L   MV
Sbjct: 129 LTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMV 188

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
             G      +Y+ ++  L R+G   + +K +        + D  ++ ++  +L      N
Sbjct: 189 ARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVN 248

Query: 296 EANFILKEM 304
           EA  I  +M
Sbjct: 249 EAVHIFCKM 257



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/227 (18%), Positives = 86/227 (37%), Gaps = 5/227 (2%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           N  ++LS  + +  T        P    +  L   L ++K     + +   M   G    
Sbjct: 71  NINDALSAFNHMVNT-----NPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHD 125

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            ++   +++   R   ++  + ++  + ++ + P++  ++ L+  +C +G +     +  
Sbjct: 126 VLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFD 185

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            M       +  +Y  ++ G CR G+  E   LL  M   G       Y  ++  L +  
Sbjct: 186 VMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDR 245

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              +AV       G  I      + SL   L  L R+ EA  +L EM
Sbjct: 246 LVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEM 292


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 2/205 (0%)

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKID 120
           R+ C      F+ + N    L +L +  +   +++K    P+  + + L+ RL K  K  
Sbjct: 174 RNVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGG 233

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
            AL     M   G   S  T++ ++  L R   +E A  L E MK   + PD+  YN L+
Sbjct: 234 LALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLI 293

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             Y   G LT    V ++M++     D  TY++L+   C+  R+ +AF  L  M   G  
Sbjct: 294 DGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQ 353

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKF 265
               TY+ ++ A  + G   +A KF
Sbjct: 354 PNVVTYSTLIDAFCKAGMLLEANKF 378



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 5/266 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   Y+ ++     E DLE  R L  +           T+N + +    + +L+     
Sbjct: 249 PSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSV 308

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              + D G  P    Y++LI   CK ++I +A   +  M + G   + +T+  ++    +
Sbjct: 309 FEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCK 368

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + EA      M  + + P+   Y  L+ A C  G+L     +  +M++  +  +  T
Sbjct: 369 AGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVT 428

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y AL+ G C  GR+ EA  L   ++  G ++    Y  +    ++     +A+  +    
Sbjct: 429 YTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMN 488

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNE 296
            +++K D  L+   G+K+ GL R NE
Sbjct: 489 KKNLKPDLLLY---GTKIWGLCRQNE 511



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 90/210 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +LI   CK+  ++EA ++   M + G  L+ +T+  +L  L    RM EA  L
Sbjct: 389 PNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEEL 448

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              + +   + +   Y  L   Y     +     +L++M ++ L  D   Y   + G CR
Sbjct: 449 FGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCR 508

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +E++  ++R M+D G +     Y  ++ A  ++G   +AV  +       IK+    
Sbjct: 509 QNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVT 568

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +G L   L  +    +A      M +  L+
Sbjct: 569 YGVLIDGLCKIGLVQQAVRYFDHMTRNGLQ 598



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  LCK+  + +A+R  D M   G   + + +  ++  L +   +EEA  L   M 
Sbjct: 569 YGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEML 628

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  +SPD   Y  L+      GN      +  +M E  +  D   Y +L+ G  R G+V+
Sbjct: 629 DKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQ 688

Query: 226 EAFVLLRRMVDDG 238
            A  LL  M+  G
Sbjct: 689 LAKSLLDEMLRKG 701



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 7/234 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E+S++V+ ++      +D G    S  Y TLI    K+ K  EA+ ++  M + G  ++ 
Sbjct: 513 EDSMAVIREM------MDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITV 566

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T+  ++  L +   +++A    + M    + P++  Y  L+   C    L     +  +
Sbjct: 567 VTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNE 626

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M ++ +  D   Y +L+ G  + G   EA  L  RMV+ G  +    Y  ++    R G 
Sbjct: 627 MLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQ 686

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
              A   +     + I  D  L   L  K   L   NEA  +  +M +R L  G
Sbjct: 687 VQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGLISG 740



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 35/245 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +IG L +   ++ A  + + M   G     +T++ ++    +   +  A  +
Sbjct: 249 PSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSV 308

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK+    PD+  YN L+  +C    +      L  M++  L  +  TY  L+   C+
Sbjct: 309 FEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCK 368

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDT 278
           AG + EA      M+  G      TY  ++ A  ++G   +A K    M   G ++ + T
Sbjct: 369 AGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVT 428

Query: 279 ------------------ELFGSL---GSKL------------IGLERFNEANFILKEMN 305
                             ELFG+L   G  L            I  +   +A  IL+EMN
Sbjct: 429 YTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMN 488

Query: 306 KRDLK 310
           K++LK
Sbjct: 489 KKNLK 493



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 13/225 (5%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y T I  LC+  +I++++ V+  M + G   ++  +  ++    +  +  EA  L++ M+
Sbjct: 499 YGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQ 558

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           ++ +   +  Y  L+   C  G +         M    L  +   Y AL+ G C+   +E
Sbjct: 559 DLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLE 618

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL-FGSL 284
           EA  L   M+D G S     Y  ++   ++ G   +A+        R +++  EL   + 
Sbjct: 619 EAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSL----RNRMVEIGMELDLCAY 674

Query: 285 GSKLIGLERFNE---ANFILKEMNKRDLKMG-----FKLRDYYEI 321
            S + G  R+ +   A  +L EM ++ +          LR YYE+
Sbjct: 675 TSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYEL 719



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 86/210 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +DTL   L  L  ++EA +    M +        + + +L  L++  +   A   
Sbjct: 179 PGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSF 238

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    +SP +  YN ++     +G+L A   + ++M+ + L  D  TY++L+ G  +
Sbjct: 239 FKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGK 298

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +  A  +   M D G      TY  ++    +     QA +++     R ++ +   
Sbjct: 299 VGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVT 358

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L           EAN    +M +  L+
Sbjct: 359 YSTLIDAFCKAGMLLEANKFFVDMIRVGLQ 388


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLL-NKRARDCCFNTANTFNFITNTENSL 83
           K G F   P    Y+ L+NA     DL+    L  N  + +   N   T++ + ++    
Sbjct: 348 KLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDV-TYSILIDSFCKR 406

Query: 84  SVLSDLCRTLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            +L        R+ +   R++   Y++LI   CK   +  A  +   M   G   +A TF
Sbjct: 407 GMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTF 466

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++S   +  ++E+A+ L   M E  ++P +  +  L+   C    +   S +  +M E
Sbjct: 467 TTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVE 526

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
            K+     TY+ ++ G C+A  +++AF LL  M+ +G      TY  ++  L   G  + 
Sbjct: 527 RKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSA 586

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           A  F+     +++KL+   + +L     G  R  EA     EM +R + M
Sbjct: 587 AKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINM 636



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 101/223 (45%), Gaps = 1/223 (0%)

Query: 89  LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +C     ++ GF P ++A   L+  L K   ID A  +V  +   GF  +   ++ +++ 
Sbjct: 308 ICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINA 367

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L +G+ +++A  L + M  + +  +   Y+ L+ ++C +G L        +M E+ +   
Sbjct: 368 LCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRET 427

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
              Y++L+ G C+ G +  A  L  +M+++G     +T+  ++    +     +A K   
Sbjct: 428 IYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYR 487

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
               ++I      F +L   L       EA+ +  EM +R +K
Sbjct: 488 EMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIK 530



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+ +I   CK   +D+A  +++ M   G      T+ P++S L    R+  A   
Sbjct: 531 PTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDF 590

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ + +  +  +   Y+ LL  YC +G LT       +M +  +  D   +  L+ GA +
Sbjct: 591 IDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMK 650

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYST 245
              ++  F LL++M D G    SV+Y++
Sbjct: 651 QQDMKRLFGLLKKMYDQGLRPDSVIYTS 678



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 5/207 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  L+   C   ++ EAL     M + G  +  +    ++    + + M+  +GL++ M
Sbjct: 605 CYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKM 664

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  + PD   Y  ++ AY  +G+   +   L  M  EK   +  TY A + G C+ G +
Sbjct: 665 YDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEI 724

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA--VKFVMVCGGRDIKLDTELFG 282
           + A  L  +M+    S    TY   + +L + G   +A  +   M+ G   +  +T  + 
Sbjct: 725 DRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKG---LLANTATYN 781

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDL 309
            L      L R  EA  +L EM +  +
Sbjct: 782 ILIRGFCKLGRLIEATKVLSEMTENGI 808



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TL+   C++++ D+ + +++ M E GF  +      ++  L +   ++ A+ L+  +
Sbjct: 290 TYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKL 349

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P+L  YN L+ A C   +L     + K M    L  +  TY  L+   C+ G +
Sbjct: 350 GRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGML 409

Query: 225 EEAFVLLRRMVDDG 238
           + A     RM++DG
Sbjct: 410 DVAESYFGRMIEDG 423



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 34/183 (18%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L   +K FP    Y   +  LCK+ +ID A  + + M       +++T+   L  LT
Sbjct: 695 CLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLT 754

Query: 150 RGKRMEEAWGL----------------------------------MEVMKEIRVSPDLTA 175
           +   M+EA  L                                  +  M E  + PD   
Sbjct: 755 KEGNMKEATDLHHEMLKGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCIT 814

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           Y+ ++  +C  G++ A   +   M  + +  D+  ++ L+ G C  G +++AF L   M+
Sbjct: 815 YSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDML 874

Query: 236 DDG 238
             G
Sbjct: 875 SRG 877



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 2/170 (1%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G  P    Y ++I    K     ++   +D+M       + +T+   ++ L +   ++
Sbjct: 666 DQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEID 725

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L E M    +SP+   Y   L +   +GN+   + +  +M +  L A+  TY+ L+
Sbjct: 726 RAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGLL-ANTATYNILI 784

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G C+ GR+ EA  +L  M ++G      TY+ ++    R G    AV+ 
Sbjct: 785 RGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVEL 834



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 100/262 (38%), Gaps = 32/262 (12%)

Query: 3   LLRKLPTKFLIPQSVLVTR---SFTKSGAFPDE-------------PTSAYYDDLVNAAG 46
           LL+K+  + L P SV+ T    +++K G+F                P    Y   +N   
Sbjct: 660 LLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLC 719

Query: 47  HERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDLCRTLARLDKGFPRK 103
              +++   +L  K         + T+    ++   E ++   +DL   +    KG    
Sbjct: 720 KVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEML---KGLLAN 776

Query: 104 SA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           +A Y+ LI   CKL ++ EA +V+  M E G     IT+  I+    R   +  A  L +
Sbjct: 777 TATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWD 836

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA---------DARTYDA 213
            M    V PD  A+N L+   C  G L     +   M    L           D    + 
Sbjct: 837 TMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNF 896

Query: 214 LVLGACRAGRVEEAFVLLRRMV 235
           L+ G C  G V+ A  L   M+
Sbjct: 897 LMHGGCVTGEVDTALRLYHSML 918



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 4/252 (1%)

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG---FPRKSAYDTLIGRLCKLKKI 119
           + C F++   F+F+ ++    + + D    L RL  G    P       ++  L +++K 
Sbjct: 141 KQCKFSSTLGFDFLVHSYLQNTRVFDAVVVL-RLMLGNTLLPEVRTLSAILNGLLRIRKF 199

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
                V D     G      T   ++  L   K    A   +  M+  R    +  YN L
Sbjct: 200 ILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVL 259

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C  G +     V K + E+ L  D  TY  LVLG CR  + ++   L+  MV+ G 
Sbjct: 260 IHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGF 319

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
               +  + ++  L + G    A   V+  G      +  ++ +L + L   E  ++A  
Sbjct: 320 VPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAEL 379

Query: 300 ILKEMNKRDLKM 311
           + K M+  +L +
Sbjct: 380 LYKNMHSMNLPL 391


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C  ++I++AL V + M   G   + IT++ ++  L   ++ E+   +
Sbjct: 290 PNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDI 349

Query: 161 ME-VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +E    +   SPD   +N L+  +C  GNL     V ++M E K+  D+ TY ALV   C
Sbjct: 350 LEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLC 409

Query: 220 RAGRVEEAFVLLRRMVD-------DGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           + G  E+A  LL ++++       DG   L + Y  +   L   G   +A K
Sbjct: 410 QGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEK 461



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 115/285 (40%), Gaps = 16/285 (5%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R    K  I +++ V       G   +  T   Y+ L+      R  E ++ +L   
Sbjct: 297 TLIRGYCAKREIEKALAVFEEMVNQGLKANNIT---YNTLIKGLCEARKFEKIKDILEGT 353

Query: 62  ARDCCFNTAN-TFNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKK 118
           A D  F+    TFN + +       L D  +   R+   K  P  + Y  L+  LC+   
Sbjct: 354 AGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGH 413

Query: 119 IDEALRVVDIMAEGGFGLSA-------ITFHPILSVLTR-GKRMEEAWGLMEVMKEIRVS 170
            ++A  ++D + E    LS          ++PI   L   GK  +      ++M+  R +
Sbjct: 414 YEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMR--RGT 471

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
            D  +Y  L+  +C +G   +   +L  M  +    D  TY++L+ G     +   A   
Sbjct: 472 QDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQS 531

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
           L +M+        ST+  ++  LL  G  +++   + +   ++I+
Sbjct: 532 LEKMLRSSHRPNSSTFHSILAKLLEQGRTSESASLIQLMLDKNIR 576



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 9/174 (5%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           ++GR   L      L  ++  + G   L A  F+ ++    R    +E+  +  +MK   
Sbjct: 120 ILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHG 179

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA-----DARTYDALVLGACRAGR 223
           VSP +  +N LLT    +G     + + KK+ +E L       D  T++ L+ G C  G 
Sbjct: 180 VSPSVVTFNSLLTILLKRGR----TNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGM 235

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           V++ F +   +   G      TY  ++  L R G    A   V   G + + L+
Sbjct: 236 VDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLN 289


>gi|302815817|ref|XP_002989589.1| hypothetical protein SELMODRAFT_21981 [Selaginella moellendorffii]
 gi|300142767|gb|EFJ09465.1| hypothetical protein SELMODRAFT_21981 [Selaginella moellendorffii]
          Length = 368

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 95/200 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI  LCK  +IDEALR+ ++M          T++ ++  +++   +E+A  +++ M+
Sbjct: 1   YNCLIEGLCKGDRIDEALRLYELMRGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTME 60

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E    PD   Y  ++  +C  GN      +L +M+E     DA  +D ++ G C+  + +
Sbjct: 61  ESDCKPDKFIYTRVINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFD 120

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA V+L+  ++ G      TY  ++  L  +  +  A++ + +   R       L+  L 
Sbjct: 121 EALVVLKVSIEAGCEPDEVTYFSIVDPLCNMEDWESALRVLELAQERKCPATNLLYSRLM 180

Query: 286 SKLIGLERFNEANFILKEMN 305
             L    +   A  +L+++ 
Sbjct: 181 KCLCKTGKVEAACQLLEDLT 200



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 98/244 (40%), Gaps = 21/244 (8%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           ++++V +   ++G  PDE T   Y  +V+   +  D E+   +L       C  T   ++
Sbjct: 121 EALVVLKVSIEAGCEPDEVT---YFSIVDPLCNMEDWESALRVLELAQERKCPATNLLYS 177

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF-------------PRKSAYDTLIGRLCKLKKIDE 121
            +         +   C+ L  L  G              P    Y  +I  LC +   DE
Sbjct: 178 RLMKCLCKTGKVEAACQLLEDLTNGSRGSEQLLGGDGCKPDVVMYSIVIDALCAMGMTDE 237

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
              VV  M E G    A+ +   L    R  R+++A  L+E+M E    PD+ +YN LL 
Sbjct: 238 GFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEIMVEAGCYPDVISYNTLLF 297

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA-----FVLLRRMVD 236
           A C  G       + + M E  +  +  TY  L+   C   ++E A     F+ L + V 
Sbjct: 298 ALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCSTKKLEGARHLFNFMKLSKCVP 357

Query: 237 DGQS 240
           D ++
Sbjct: 358 DMET 361



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 12/146 (8%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           S++ D    +   D+GF            P    Y   +   C+  ++D+A R+++IM E
Sbjct: 223 SIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEIMVE 282

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     I+++ +L  L    + EEA  L +VM E  + P++  Y  L+ A C    L  
Sbjct: 283 AGCYPDVISYNTLLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCSTKKLEG 342

Query: 192 TSGVLKKMEEEKLGADARTYDALVLG 217
              +   M+  K   D  TY AL+LG
Sbjct: 343 ARHLFNFMKLSKCVPDMETYKALILG 368



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 46/214 (21%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +D +IG LCK  K DEAL V+ +  E G     +T+  I+  L   +  E A  +
Sbjct: 101 PDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTYFSIVDPLCNMEDWESALRV 160

Query: 161 MEVMKEIRVS----------------------------------------------PDLT 174
           +E+ +E +                                                PD+ 
Sbjct: 161 LELAQERKCPATNLLYSRLMKCLCKTGKVEAACQLLEDLTNGSRGSEQLLGGDGCKPDVV 220

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            Y+ ++ A C  G       V+K MEE  +  DA  Y   +   CR+ R+++A  LL  M
Sbjct: 221 MYSIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEIM 280

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           V+ G      +Y  ++ AL   G   +A +   V
Sbjct: 281 VEAGCYPDVISYNTLLFALCSAGQEEEACRLFQV 314



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 16/198 (8%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126
           F+  +    + + E++L VL      LA+  K       Y  L+  LCK  K++ A +++
Sbjct: 142 FSIVDPLCNMEDWESALRVLE-----LAQERKCPATNLLYSRLMKCLCKTGKVEAACQLL 196

Query: 127 DIMAEG-----------GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
           + +  G           G     + +  ++  L      +E + +++ M+E  V PD   
Sbjct: 197 EDLTNGSRGSEQLLGGDGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVV 256

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           Y   L A+C    L     +L+ M E     D  +Y+ L+   C AG+ EEA  L + MV
Sbjct: 257 YTIFLYAFCRSARLDDACRLLEIMVEAGCYPDVISYNTLLFALCSAGQEEEACRLFQVMV 316

Query: 236 DDGQSVLYSTYAHVMGAL 253
           + G      TY  ++ AL
Sbjct: 317 ETGIEPNVFTYTQLIRAL 334



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y  +I   CKL     A+ ++  M E G+   A+ F  I+  L +  + +EA  +
Sbjct: 66  PDKFIYTRVINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVV 125

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++V  E    PD   Y  ++   C   +  +   VL+  +E K  A    Y  L+   C+
Sbjct: 126 LKVSIEAGCEPDEVTYFSIVDPLCNMEDWESALRVLELAQERKCPATNLLYSRLMKCLCK 185

Query: 221 AGRVEEAFVLLRRMVD-----------DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
            G+VE A  LL  + +           DG       Y+ V+ AL  +G   +    V   
Sbjct: 186 TGKVEAACQLLEDLTNGSRGSEQLLGGDGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAM 245

Query: 270 GGRDIKLDTELF 281
             R +K D  ++
Sbjct: 246 EERGVKPDAVVY 257



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 77/167 (46%)

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++  L +G R++EA  L E+M+   V  D+  YN ++      G +     VLK ME
Sbjct: 1   YNCLIEGLCKGDRIDEALRLYELMRGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTME 60

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E     D   Y  ++ G C+ G  + A VLL RM + G +     +  ++G L +   + 
Sbjct: 61  ESDCKPDKFIYTRVINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFD 120

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +A+  + V      + D   + S+   L  +E +  A  +L+   +R
Sbjct: 121 EALVVLKVSIEAGCEPDEVTYFSIVDPLCNMEDWESALRVLELAQER 167


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 75/146 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    YD LI   CK+ K+DEA  V   M+E G+G +  T+  ++  L + KR++ A  +
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKV 728

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E   +P++  Y  ++   C  G       ++  MEE+    +  TY A++ G  +
Sbjct: 729 LSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
           AG+V++   L+R+M   G +  + TY
Sbjct: 789 AGKVDKCLELMRQMGAKGCAPNFVTY 814



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 18/292 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L++A    R + +   L      + C     T+  + +       +   C+ 
Sbjct: 548 PNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 93  LARL---------------DKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
            AR+               D G    P    Y  L+  LCK  K+ EA  ++D+M+  G 
Sbjct: 608 YARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
             + I +  ++    +  +++EA  +   M E    P++  Y+ L+        L     
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALK 727

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           VL +M E     +   Y  ++ G C+ G+ +EA+ L+  M + G      TY  ++    
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFG 787

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           + G   + ++ +   G +    +   +  L +        ++A+ +L EM +
Sbjct: 788 KAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 98/229 (42%), Gaps = 17/229 (7%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + KGF P  S Y  +IG LC   K+D A  + + M          T+  ++    +   +
Sbjct: 472 MSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLL 531

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A    + M     +P++  Y  L+ AY     +++ + + + M  E    +  TY AL
Sbjct: 532 QQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTAL 591

Query: 215 VLGACRAGRVEEAFVLLRRM--------------VDDG--QSVLYSTYAHVMGALLRLGY 258
           + G C++G++E+A  +  RM              +DDG  +     TY  ++  L +   
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHK 651

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +A   + V      + +  ++ +L      + + +EA  +  +M++R
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSER 700



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 66/153 (43%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC   K ++A  ++  M   GF     T+  ++ +L    +++ A+ L E MK   V PD
Sbjct: 455 LCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPD 514

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  L+ ++C  G L        +M  +    +  TY AL+    +A ++  A  L  
Sbjct: 515 VFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFE 574

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            M+ +G      TY  ++    + G   +A + 
Sbjct: 575 MMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 35/233 (15%)

Query: 48  ERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL----------- 96
           + D E +  LLN   R CC N              L  L DL    +RL           
Sbjct: 190 DEDKEILGKLLNVLIRKCCRN-----GLWNVALEELGRLKDLGYKPSRLTYNALVRVFLE 244

Query: 97  ---------------DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
                          D GF          +  LCK  +  EAL +++   +  F L  + 
Sbjct: 245 ADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KEEFKLDTVI 301

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  ++S L      EEA   +  M+     P++  Y  LL     K  L     +L  M 
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            E      R +++L+   CR+G    A+ LL++M D G    Y  Y  ++G +
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI 414



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 12/233 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+     +R L   + +L+    + C+ +   FN + +        S   + 
Sbjct: 332 PNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKL 391

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG--------LSAITFH 142
           L ++ D G  P    Y+ LIG +C  +K+  +L V++ +AE  +G        L+ +   
Sbjct: 392 LKKMGDCGCQPGYVVYNILIGGICGNEKL-PSLDVLE-LAEKAYGEMLDAHVVLNKVNVS 449

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +   L    + E+A+ ++  M      PD + Y+ ++   C    +     + ++M+  
Sbjct: 450 NLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN 509

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  D  TY  L+   C+ G +++A      MV DG +    TY  ++ A L+
Sbjct: 510 HVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLK 562



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C    +D+A +++D M +  +      +  ++    R      + GL
Sbjct: 809 PNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNR--EFIISLGL 866

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE--EKLGADARTYDALVLGA 218
           ++ + E    P + AY  L+ ++C  G L     + K+M        AD   Y +L+   
Sbjct: 867 LDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESL 926

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             A +V++AF L   M+  G     S + +++  L+R+  + +A++ 
Sbjct: 927 SLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQL 973



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 41/189 (21%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LC+    +EA+  +  M       + +T+  +L    R +++     ++ +M 
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA------- 218
                P    +N L+ AYC  G+ +    +LKKM +         Y+ L+ G        
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421

Query: 219 ----------------------------------CRAGRVEEAFVLLRRMVDDGQSVLYS 244
                                             C AG+ E+A+ ++R M+  G     S
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481

Query: 245 TYAHVMGAL 253
           TY+ V+G L
Sbjct: 482 TYSKVIGLL 490



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 24/224 (10%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           FTK       P    Y  L++    ++ L+    +L++   + C       N I  TE  
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSC-----APNVIIYTE-- 746

Query: 83  LSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
             ++  LC+ + + D+ +            P    Y  +I    K  K+D+ L ++  M 
Sbjct: 747 --MIDGLCK-VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMG 803

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   + +T+  +++       +++A  L++ MK+      +  Y  ++    F     
Sbjct: 804 AKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEG--FNREFI 861

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            + G+L ++ E         Y  L+   C+AGR+E A  L + M
Sbjct: 862 ISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEM 905



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 13/177 (7%)

Query: 133 GFGLSAITFHPILSVLTRG--KRMEEAWGLMEVMKEIRVSPDLTA---YNYLLTAYCFKG 187
           G+G +   +H +L VL  G   R+ E     + ++EIR           N L+   C  G
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPE-----QFLREIRDEDKEILGKLLNVLIRKCCRNG 211

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
                   L ++++        TY+ALV     A R++ A+++ R M D G ++   T  
Sbjct: 212 LWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLG 271

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +  L + G + +A+  +      + KLDT ++  + S L     F EA   L  M
Sbjct: 272 CFVHLLCKAGRWREALALI---EKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRM 325


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 21/228 (9%)

Query: 32  EPTSAYYDDLVNAAGHERDL-ETVRYL--LNKRARDCCFN--TANTFNFITNTENSLSVL 86
           +P+   Y  LV+     ++  E +++L  L K  +DC FN     T  F     N   V+
Sbjct: 122 QPSIQNYCFLVHILAWSKEFKEAMKFLTELIKLVKDCSFNEDVFQTLLFCCQDCNWDPVI 181

Query: 87  SD-LCRTLAR---LDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
            D L +   R   + +GF            P   + + L+  L KL +ID+  +V   MA
Sbjct: 182 FDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMA 241

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   ++ TF+ +  V  +   +++    +E M+E    PD+  YN L++ YC KG L 
Sbjct: 242 RVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLD 301

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
               + + M    +  D  +Y AL+ G C+ G+V EA  L  RM+  G
Sbjct: 302 DAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRG 349



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 67/138 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L    C+   +D+    ++ M E GF    +T++ ++S   R  R+++A+ L
Sbjct: 247 PNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYL 306

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M    V PDL +Y  L+   C +G +     +  +M    L  D  +++ L+ G C+
Sbjct: 307 YRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCK 366

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G++ E+  LL  M+  G
Sbjct: 367 EGKMRESRSLLHEMIGSG 384



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 105/241 (43%), Gaps = 2/241 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN +T+       +  +   L R+++ GF P    Y+TLI   C+  ++D+A  +  IM
Sbjct: 251 TFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIM 310

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
                    +++  +++ L +  ++ EA  L   M    ++PD+ ++N L+  YC +G +
Sbjct: 311 YRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKM 370

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
             +  +L +M    +  D  T   L+ G  +  R+  A  L+  +   G  +    Y ++
Sbjct: 371 RESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYL 430

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           M ++   G    A   +     R      E++  L   L   +   +A  +  EM  R++
Sbjct: 431 MVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNI 490

Query: 310 K 310
           K
Sbjct: 491 K 491



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 66/155 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK   I +AL V   M       SAIT+  ++  L R  R  EA  L
Sbjct: 457 PGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESL 516

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME M +  + PD      L+  YC + ++     +L+   +E    D+ +Y+ LV   C 
Sbjct: 517 MEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAKEFQIFDSESYNTLVKTYCE 576

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
                    L  RM+  G +    T+  ++  L +
Sbjct: 577 DADATRLMELQDRMLKVGFAPNIQTFRQMIHGLWK 611



 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 56/138 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K     LI    K  +I  AL +V  +   G  +S   +  ++  +    R   A  L
Sbjct: 387 PDKVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSL 446

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ + +    P +  YN L+ + C   ++     V  +M    +   A TY AL+   CR
Sbjct: 447 LQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCR 506

Query: 221 AGRVEEAFVLLRRMVDDG 238
             R  EA  L+  M+  G
Sbjct: 507 TSRSMEAESLMEEMLQSG 524


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI  LC+   +  A+ V++ M + G   ++++++P+L    + K+ME A   
Sbjct: 187 PSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEY 246

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M      PD+  YN LLTA C  G + A   +L ++  +       TY+ ++ G  +
Sbjct: 247 LGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSK 306

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G+ ++A  LL  M   G      TY+ ++G L R G   +A+KF
Sbjct: 307 VGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKF 351



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 91/197 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  +C   +  +A +++  M   G   S +TF+ +++ L R   +  A  +
Sbjct: 152 PDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDV 211

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M +   +P+  +YN LL  +C +  +      L KM       D  TY+ L+   C+
Sbjct: 212 LEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCK 271

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+ A  LL ++   G S +  TY  V+  L ++G   QA K +     + +K D   
Sbjct: 272 DGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIIT 331

Query: 281 FGSLGSKLIGLERFNEA 297
           + SL   L    + +EA
Sbjct: 332 YSSLVGGLSREGKVDEA 348



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 118/278 (42%), Gaps = 40/278 (14%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN------- 78
           SGA PD  T       + + G   D E    LL    R  C  +  TFN + N       
Sbjct: 148 SGAVPDVITYNVLISGMCSTGRWMDAEK---LLADMVRRGCSPSVVTFNILINFLCRKGL 204

Query: 79  ----------------TENSLS---VLSDLC------RTLARLDK-----GFPRKSAYDT 108
                           T NSLS   +L   C      R +  L K      +P    Y+T
Sbjct: 205 LGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNT 264

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  LCK  K+D A+ +++ ++  G     IT++ ++  L++  + ++A  L++ M+   
Sbjct: 265 LLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKG 324

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD+  Y+ L+     +G +         +E   +  +A TY+A++LG C+A + + A 
Sbjct: 325 LKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAI 384

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             L  MV  G     ++Y  ++  L   G   +A++ +
Sbjct: 385 DFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELL 422



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 95/203 (46%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           +LI   CK+ K  +A R+++I+ + G     IT++ ++S +    R  +A  L+  M   
Sbjct: 124 SLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRR 183

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
             SP +  +N L+   C KG L     VL+KM +     ++ +Y+ L+ G C+  ++E A
Sbjct: 184 GCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERA 243

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
              L +M   G      TY  ++ AL + G    AV+ +     +        + ++   
Sbjct: 244 IEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDG 303

Query: 288 LIGLERFNEANFILKEMNKRDLK 310
           L  + + ++A  +L EM  + LK
Sbjct: 304 LSKVGKTDQAAKLLDEMRAKGLK 326



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 14/155 (9%)

Query: 123 LRVVDIMAEGGFGLSAITFHPI--------------LSVLTRGKRMEEAWGLMEVMKEIR 168
           L+ +D +  G  G   ++  PI              LS L R   +EE +  +E M    
Sbjct: 55  LQSLDKLPNGHLGNGHVSLSPIHSLTNFEEIESNNNLSKLVRNGELEEGFRFLESMVYRG 114

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             PD+     L+  +C  G     + +++ +E+     D  TY+ L+ G C  GR  +A 
Sbjct: 115 DIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAE 174

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            LL  MV  G S    T+  ++  L R G   +A+
Sbjct: 175 KLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAI 209


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 75/146 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    YD LI   CK+ K+DEA  V   M+E G+G +  T+  ++  L + KR++ A  +
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKV 728

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E   +P++  Y  ++   C  G       ++  MEE+    +  TY A++ G  +
Sbjct: 729 LSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
           AG+V++   L+R+M   G +  + TY
Sbjct: 789 AGKVDKCLELMRQMGAKGCAPNFVTY 814



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 18/292 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L++A    R + +   L      + C     T+  + +       +   C+ 
Sbjct: 548 PNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 93  LARL---------------DKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
            AR+               D G    P    Y  L+  LCK  K+ EA  ++D+M+  G 
Sbjct: 608 YARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
             + I +  ++    +  +++EA  +   M E    P++  Y+ L+        L     
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALK 727

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           VL +M E     +   Y  ++ G C+ G+ +EA+ L+  M + G      TY  ++    
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFG 787

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           + G   + ++ +   G +    +   +  L +        ++A+ +L EM +
Sbjct: 788 KAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 98/229 (42%), Gaps = 17/229 (7%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + KGF P  S Y  +IG LC   K+D A  + + M          T+  ++    +   +
Sbjct: 472 MSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLL 531

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A    + M     +P++  Y  L+ AY     +++ + + + M  E    +  TY AL
Sbjct: 532 QQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTAL 591

Query: 215 VLGACRAGRVEEAFVLLRRM--------------VDDG--QSVLYSTYAHVMGALLRLGY 258
           + G C++G++E+A  +  RM              +DDG  +     TY  ++  L +   
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHK 651

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +A   + V      + +  ++ +L      + + +EA  +  +M++R
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSER 700



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 66/153 (43%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC   K ++A  ++  M   GF     T+  ++ +L    +++ A+ L E MK   V PD
Sbjct: 455 LCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPD 514

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  L+ ++C  G L        +M  +    +  TY AL+    +A ++  A  L  
Sbjct: 515 VFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFE 574

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            M+ +G      TY  ++    + G   +A + 
Sbjct: 575 MMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 35/233 (15%)

Query: 48  ERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL----------- 96
           + D E +  LLN   R CC N              L  L DL    +RL           
Sbjct: 190 DEDKEILGKLLNVLIRKCCRN-----GLWNVALEELGRLKDLGYKPSRLTYNALVRVFLE 244

Query: 97  ---------------DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
                          D GF          +  LCK  +  EAL +++   +  F L  + 
Sbjct: 245 ADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KEEFKLDTVI 301

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  ++S L      EEA   +  M+     P++  Y  LL     K  L     +L  M 
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            E      R +++L+   CR+G    A+ LL++M D G    Y  Y  ++G +
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI 414



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 12/233 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+     +R L   + +L+    + C+ +   FN + +        S   + 
Sbjct: 332 PNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKL 391

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG--------LSAITFH 142
           L ++ D G  P    Y+ LIG +C  +K+  +L V++ +AE  +G        L+ +   
Sbjct: 392 LKKMGDCGCQPGYVVYNILIGGICGNEKL-PSLDVLE-LAEKAYGEMLDAHVVLNKVNVS 449

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +   L    + E+A+ ++  M      PD + Y+ ++   C    +     + ++M+  
Sbjct: 450 NLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN 509

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  D  TY  L+   C+ G +++A      MV DG +    TY  ++ A L+
Sbjct: 510 HVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLK 562



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 4/158 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C    +D+A +++D M +  +      +  ++    R      + GL
Sbjct: 809 PNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNR--EFIISLGL 866

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE--EKLGADARTYDALVLGA 218
           ++ + E    P + AY  L+ ++C  G L     + K M        AD   Y +L+   
Sbjct: 867 LDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESL 926

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
             A +V++AF L   M+  G     S + +++  L+R+
Sbjct: 927 SLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRI 964



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 41/189 (21%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LC+    +EA+  +  M       + +T+  +L    R +++     ++ +M 
Sbjct: 302 YTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMI 361

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA------- 218
                P    +N L+ AYC  G+ +    +LKKM +         Y+ L+ G        
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421

Query: 219 ----------------------------------CRAGRVEEAFVLLRRMVDDGQSVLYS 244
                                             C AG+ E+A+ ++R M+  G     S
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481

Query: 245 TYAHVMGAL 253
           TY+ V+G L
Sbjct: 482 TYSKVIGLL 490



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 24/224 (10%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           FTK       P    Y  L++    ++ L+    +L++   + C       N I  TE  
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSC-----APNVIIYTE-- 746

Query: 83  LSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
             ++  LC+ + + D+ +            P    Y  +I    K  K+D+ L ++  M 
Sbjct: 747 --MIDGLCK-VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMG 803

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   + +T+  +++       +++A  L++ MK+      +  Y  ++    F     
Sbjct: 804 AKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEG--FNREFI 861

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            + G+L ++ E         Y  L+   C+AGR+E A  L + M
Sbjct: 862 ISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXM 905



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 13/177 (7%)

Query: 133 GFGLSAITFHPILSVLTRG--KRMEEAWGLMEVMKEIRVSPDLTA---YNYLLTAYCFKG 187
           G+G +   +H +L VL  G   R+ E     + ++EIR           N L+   C  G
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPE-----QFLREIRDEDKEILGKLLNVLIRKCCRNG 211

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
                   L ++++        TY+ALV     A R++ A+++ R M D G ++   T  
Sbjct: 212 LWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLG 271

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +  L + G + +A+  +      + KLDT ++  + S L     F EA   L  M
Sbjct: 272 CFVHLLCKAGRWREALALI---EKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRM 325


>gi|125570756|gb|EAZ12271.1| hypothetical protein OsJ_02159 [Oryza sativa Japonica Group]
          Length = 596

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  LC+ +  + A   ++ + E GF    +T++ +LS   R  R+++A  L
Sbjct: 208 PNAHTFNILVAALCRGEDAERAQGFLEELEEQGFEPDGVTYNTLLSGYCRRGRLQDALHL 267

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +VM   RV PDL ++  ++ A C  G +     +  +M +  L  DA  Y  L+ G C 
Sbjct: 268 FDVMPYRRVQPDLVSHTVVMDALCKAGRVRDARRMFDRMIQSGLSPDAVAYSVLIAGYCN 327

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
            GR+ EA  LL  MV  G S
Sbjct: 328 EGRLREARFLLMEMVGCGFS 347



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%)

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
           +MA  G   +A TF+ +++ L RG+  E A G +E ++E    PD   YN LL+ YC +G
Sbjct: 200 VMARAGVRPNAHTFNILVAALCRGEDAERAQGFLEELEEQGFEPDGVTYNTLLSGYCRRG 259

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
            L     +   M   ++  D  ++  ++   C+AGRV +A  +  RM+  G S
Sbjct: 260 RLQDALHLFDVMPYRRVQPDLVSHTVVMDALCKAGRVRDARRMFDRMIQSGLS 312



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 15/184 (8%)

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           +R  R ++ W    VM    V P+   +N L+ A C   +     G L+++EE+    D 
Sbjct: 186 SRAGRFDDLWAARAVMARAGVRPNAHTFNILVAALCRGEDAERAQGFLEELEEQGFEPDG 245

Query: 209 RTYDALVLGACRAGRVEEAFVLL-----RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            TY+ L+ G CR GR+++A  L      RR+  D       ++  VM AL + G    A 
Sbjct: 246 VTYNTLLSGYCRRGRLQDALHLFDVMPYRRVQPD-----LVSHTVVMDALCKAGRVRDAR 300

Query: 264 KFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM-GFKLRDYYE 320
           +    M+  G  +  D   +  L +      R  EA F+L EM        GF L+   E
Sbjct: 301 RMFDRMIQSG--LSPDAVAYSVLIAGYCNEGRLREARFLLMEMVGCGFSSEGFALKVVVE 358

Query: 321 INVK 324
            +VK
Sbjct: 359 SHVK 362



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 9/232 (3%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN-TFNFITNTENSL 83
           +SG  PD   +  Y  L+    +E  L   R+LL +    C F++       +  +    
Sbjct: 308 QSGLSPD---AVAYSVLIAGYCNEGRLREARFLLMEMV-GCGFSSEGFALKVVVESHVKF 363

Query: 84  SVLSDLCRTLARLDKG---FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           S L      +A + K     P +S Y  LIG LC+  + + A  ++  M E G   S   
Sbjct: 364 SKLLTCLNMVAPIRKHGVVIPSQS-YSCLIGALCEDMRPNAARGLLHWMIEDGHSPSLAI 422

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ I+    +   +EEA  +   M    V  D   Y  L+T +C  G       ++ +M 
Sbjct: 423 YNMIIECFCQCDIVEEALDVKVEMISREVRLDFNTYRALITCFCRLGRSLDGESIMAEMI 482

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           E     +     ALV G C+ G +  A ++LR  V D       +Y  +M A
Sbjct: 483 ESGFQPNEAICSALVCGFCKEGALNRAELILRAFVLDFHVHCNESYNALMRA 534



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 63/157 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  LI   C   ++ EA  ++  M   GF         ++    +  ++     +
Sbjct: 313 PDAVAYSVLIAGYCNEGRLREARFLLMEMVGCGFSSEGFALKVVVESHVKFSKLLTCLNM 372

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +++  V     +Y+ L+ A C      A  G+L  M E+        Y+ ++   C+
Sbjct: 373 VAPIRKHGVVIPSQSYSCLIGALCEDMRPNAARGLLHWMIEDGHSPSLAIYNMIIECFCQ 432

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              VEEA  +   M+     + ++TY  ++    RLG
Sbjct: 433 CDIVEEALDVKVEMISREVRLDFNTYRALITCFCRLG 469


>gi|302791539|ref|XP_002977536.1| hypothetical protein SELMODRAFT_417360 [Selaginella moellendorffii]
 gi|300154906|gb|EFJ21540.1| hypothetical protein SELMODRAFT_417360 [Selaginella moellendorffii]
          Length = 655

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 4/160 (2%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           + L V    C  +AR  K  P  + Y  LI   C+  +ID+AL ++  M E G  L +  
Sbjct: 176 SKLDVAIQQCGRMARTFKVTPSSTTYSMLINLACRSSQIDQALDLIQEMHEKGVQLGSDV 235

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F P++         E  + L   MK + V P   AYNY L A     N+      L++M+
Sbjct: 236 FQPLMIAFLHDSHPEGVFELFAAMKRMNVQPSYEAYNYFLRASAKANNVEKMFSALREMK 295

Query: 201 EEKLGADARTYDALV--LGACRAGRVEEAFVLLRRMVDDG 238
           E +L   + TY+A++  LGA R  +   A  +L  M +D 
Sbjct: 296 ELRLPRTSETYNAVIQALGASR--QYHRALTVLNDMENDS 333


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K FP   +Y  L+   C L  + EA R+ D M   G   + +T + ++    R   + +A
Sbjct: 495 KIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKA 554

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
              +  M    V PD   YN L+  +     +     ++ KME + L  D  TY+ ++ G
Sbjct: 555 DEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNG 614

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            CR GR++EA ++LR+M++ G     STY  ++   +      +A +F
Sbjct: 615 FCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRF 662



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C+   + EAL + D M E G  L  + ++ IL+ L + K + +A  L
Sbjct: 358 PDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANAL 417

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  V PD   +  L+  +C +GN+     +   M ++ +  D  TY+ L+ G C+
Sbjct: 418 FDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCK 477

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
              +E+A  L   M+       + +YA ++     LG+ ++A + 
Sbjct: 478 TTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRL 522



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 94/206 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY+T++  LCK K + +A  + D M E G      TF  ++    +   M +A  L  +M
Sbjct: 397 AYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIM 456

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  + PD+  YN L+  +C    +   + +  +M   K+  +  +Y  LV G C  G V
Sbjct: 457 TQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFV 516

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EAF L   M+  G      T   V+    R G  ++A +F+       +  D+  + +L
Sbjct: 517 SEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTL 576

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
            +  +  E  ++A F++ +M  + L+
Sbjct: 577 INGFVKGEYMDKAFFLINKMETKGLQ 602



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 2/209 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L++      ++E    L N+      F    ++  + N   +L  +S+  R
Sbjct: 462 KPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFR 521

Query: 92  TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               +  KG  P     +T+I   C+   + +A   +  M   G G  +IT++ +++   
Sbjct: 522 LWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFV 581

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +G+ M++A+ L+  M+   + PD+  YN +L  +C +G +     +L+KM E  +  D  
Sbjct: 582 KGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRS 641

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G      ++EAF     M+  G
Sbjct: 642 TYTTLINGYVSQDNLKEAFRFHDEMLQRG 670



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 86/209 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+TL+   C+     EA  +   M   G     I+F  ++ V +R   +++A   
Sbjct: 288 PDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMY 347

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK   + PD   Y  L+  YC  G ++    +  KM E+    D   Y+ ++ G C+
Sbjct: 348 FRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCK 407

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              + +A  L   MV+ G    + T+  ++    + G   +A+    +   ++IK D   
Sbjct: 408 KKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVT 467

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L           +AN +  EM  R +
Sbjct: 468 YNILIDGFCKTTEMEKANELWNEMISRKI 496



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TLI   C+   + EA  V++ M+  G   +  T++ +++ L +  R   A G+   M
Sbjct: 222 TYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM 281

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
             I +SPD T YN LL   C   N      +   M    +  D  ++ +L+  + R G +
Sbjct: 282 LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHL 341

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++A +  R M   G       Y  ++    R G  ++A++       +   LD   + ++
Sbjct: 342 DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTI 401

Query: 285 GSKLIGLERFNEANFILKEMNKRDLKMGF 313
            + L   +   +AN +  EM +R +   F
Sbjct: 402 LNGLCKKKLLADANALFDEMVERGVVPDF 430



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 5/169 (2%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + ++  LCK  KID+    +  M + G     +T++ +++   R   + EA+ +M  M  
Sbjct: 189 NIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSG 248

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + P L  YN ++   C KG      GV  +M    L  D  TY+ L++ +CR     E
Sbjct: 249 KGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLE 308

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
           A  +   M+  G S    +++ ++G   R G+  QA+ +      RD+K
Sbjct: 309 AKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYF-----RDMK 352



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 85/181 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           +A ++L+G L K+  +D A  V + +A  G  L+  T + +++ L +  ++++    +  
Sbjct: 151 NACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLID 210

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M++  +  D+  YN L+ AYC +G L     V+  M  + L     TY+A++ G C+ GR
Sbjct: 211 MEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGR 270

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
              A  +   M+  G S   +TY  ++    R   + +A         R +  D   F S
Sbjct: 271 YVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSS 330

Query: 284 L 284
           L
Sbjct: 331 L 331



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 123/297 (41%), Gaps = 5/297 (1%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           Q+++  R    SG  PD   +  Y  L+N       +     + +K     C      +N
Sbjct: 343 QALMYFRDMKTSGLVPD---NVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYN 399

Query: 75  FITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            I N      +L+D       + ++G  P    + TLI   CK   + +AL +  IM + 
Sbjct: 400 TILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQK 459

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
                 +T++ ++    +   ME+A  L   M   ++ P+  +Y  L+  YC  G ++  
Sbjct: 460 NIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEA 519

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  +M  + +     T + ++ G CR+G + +A   L +M+ +G      TY  ++  
Sbjct: 520 FRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLING 579

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            ++  Y  +A   +     + ++ D   +  + +      R  EA  IL++M +R +
Sbjct: 580 FVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGI 636



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 90/207 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CK  ++++A  + + M       + I++  +++       + EA+ L
Sbjct: 463 PDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRL 522

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P L   N ++  YC  G+L+     L KM  E +G D+ TY+ L+ G  +
Sbjct: 523 WDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVK 582

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              +++AF L+ +M   G      TY  ++    R G   +A   +     R I  D   
Sbjct: 583 GEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRST 642

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + +L +  +  +   EA     EM +R
Sbjct: 643 YTTLINGYVSQDNLKEAFRFHDEMLQR 669



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +D LI    + +K++E      I+   GF +S    + +L  L +   ++ AW   EV 
Sbjct: 117 VFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAW---EVY 173

Query: 165 KEI-RVSPDLTAY--NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
            EI R   +L  Y  N ++ A C    +      L  ME++ + AD  TY+ L+   CR 
Sbjct: 174 NEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCRE 233

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           G + EAF ++  M   G      TY  V+  L + G Y +A
Sbjct: 234 GLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRA 274



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 2/224 (0%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KG 99
           +VNA   +  ++ V+  L    +   F    T+N + N      +L +    +  +  KG
Sbjct: 191 MVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKG 250

Query: 100 F-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
             P    Y+ +I  LCK  +   A  V + M   G      T++ +L    R     EA 
Sbjct: 251 LKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAK 310

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            +   M    VSPDL +++ L+      G+L       + M+   L  D   Y  L+ G 
Sbjct: 311 DIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGY 370

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           CR G + EA  +  +M++ G ++    Y  ++  L +    A A
Sbjct: 371 CRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADA 414


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y  LI    K   I+EALR+ D M   G  L+ +T++ ++  + +   M +A  L
Sbjct: 344 PNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    + PD   YN L+  Y    ++     +L +M+  KL     TY  L+ G C 
Sbjct: 404 FNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCH 463

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +  +++A  +L +M+ +G       Y  ++ A ++   Y  A++ + +     +  D   
Sbjct: 464 SSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFC 523

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L   ++  EA  +L +M ++ +K
Sbjct: 524 YNCLIIGLCRAKKVEEAKMLLVDMGEKGIK 553



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+  IG LC+   +DEAL V  +M E G G    T+  ++    + KR +EA  +
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M    ++P+   Y  L+  +  +GN+     +  +M    L  +  TY+A++ G  +
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG + +A  L   M+  G      TY  ++   L+    A+A + +     R +      
Sbjct: 394 AGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFT 453

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L S L       +AN +L +M +  +K
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVK 483



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 1/146 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KG  P   AY  +I  L K  K  EA+ V     + G       ++ ++S   +   +
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDI 677

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A  L + M    ++P++  YN L+   C  G +T    +  ++EE+ L  D  TY  +
Sbjct: 678 EKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTI 737

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQS 240
           + G C++G + EAF L   M+  G S
Sbjct: 738 IDGYCKSGNLTEAFKLFDEMISKGIS 763



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 118/282 (41%), Gaps = 8/282 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-----NTENSLSVLS 87
           P+   Y  L++   H  DL+    +L++  R+      N F + T       E+   +  
Sbjct: 449 PSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGV--KPNVFMYGTLIKAYVQESRYEMAI 506

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +L + +   +   P    Y+ LI  LC+ KK++EA  ++  M E G   +A T+   +++
Sbjct: 507 ELLKIMIA-NGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINL 565

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            ++   ++ A    + M    + P+   Y  L+  +C  GN        K M E+ L  D
Sbjct: 566 YSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPD 625

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
            R Y A++    + G+ +EA  +  + +  G       Y  ++    + G   +A +   
Sbjct: 626 IRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYD 685

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                 I  +  ++ +L + L  L    +A  +  E+ ++DL
Sbjct: 686 EMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDL 727



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           SA+++LI   CK  K+ EA  + D M +     + +T+  ++    + + MEEA  L   
Sbjct: 801 SAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLD 860

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+   + P+   Y  LL +Y   GN      + K ME   +  DA  Y  +    C+ G+
Sbjct: 861 METRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGK 920

Query: 224 VEEAFVLLRRMVDDG 238
             EA  LL + + +G
Sbjct: 921 SLEALKLLNKSLVEG 935



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 1/184 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCKL ++ +A  + D + E       +T+  I+    +   + EA+ L
Sbjct: 694 PNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKL 753

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    +SPD   Y  L+     +GNL     +  + +++ +G+    +++L+   C+
Sbjct: 754 FDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGS-LSAFNSLIDSFCK 812

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V EA  L   MVD   +    TY  ++ A  +     +A +  +    R+I  +T  
Sbjct: 813 HGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLT 872

Query: 281 FGSL 284
           + SL
Sbjct: 873 YTSL 876



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 65/133 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI   CK   I++A ++ D M   G   + + ++ +++ L +   + +A  L
Sbjct: 659 PDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKAREL 718

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + ++E  + PD+  Y+ ++  YC  GNLT    +  +M  + +  D   Y  L+ G  +
Sbjct: 719 FDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGK 778

Query: 221 AGRVEEAFVLLRR 233
            G +E+A  L   
Sbjct: 779 EGNLEKALSLFHE 791



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 83  LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           L +L  L R       G    + +D  I +   L  ++EA  V       GF  + I  +
Sbjct: 154 LEILDSLVRCYREF--GGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCN 211

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++  L +   M   W +   M E ++ PD+  Y  ++ A+C  G++     VL +ME+E
Sbjct: 212 NLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE 271

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
               +  TY+A + G C+ G V+EA  + + M++ G
Sbjct: 272 -CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKG 306



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 4/156 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI    K   + +A  ++  M       S  T+  ++S L     +++A  +
Sbjct: 414 PDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEV 473

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    V P++  Y  L+ AY  +        +LK M    +  D   Y+ L++G CR
Sbjct: 474 LDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCR 533

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           A +VEEA +LL  M + G        AH  GA + L
Sbjct: 534 AKKVEEAKMLLVDMGEKG----IKPNAHTYGAFINL 565


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 83/160 (51%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           K  Y  +I   CK+K +D+AL +   M         +T++ ++  L +  R+  AW L++
Sbjct: 336 KHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVD 395

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M++     D+  YN L+ A C   ++     ++KK++++ +  D  TY+ L+ G C+ G
Sbjct: 396 EMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQG 455

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           R+++A V+ + ++  G ++   TY  ++  L   G   +A
Sbjct: 456 RLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEA 495



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 24/218 (11%)

Query: 25  KSGAFPDEPTSAYYDD---LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           K G  PD  T +   D   LVN     + + ++                N F  I   + 
Sbjct: 309 KEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSI--------------VINGFCKIKMVDK 354

Query: 82  SLSVLSDL-CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +LS+  ++ CR +A      P    Y++LI  LCK  +I  A  +VD M + G     IT
Sbjct: 355 ALSLFYEMRCRRIA------PDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIIT 408

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++  L +   +++A  L++ +K+  +  D+  YN L+   C +G L     + + + 
Sbjct: 409 YNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLL 468

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            +       TY  ++ G C  G + EA  LL +M D+G
Sbjct: 469 IKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNG 506



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%)

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
            + +Y TLI  LCK+ +   AL+++  +         + +  I+  L + K + +A+ L 
Sbjct: 175 NQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELY 234

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
             M   R+SP +   N L+  YC  G      G+L++M  + +  D  T++ LV   C+ 
Sbjct: 235 SEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKE 294

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
           G+++EA   +  M+ +G      TY+ +M
Sbjct: 295 GKIKEAKSGIAVMMKEGVMPDVVTYSSLM 323



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y T+I  LCK K +++A  +   M       + +T + ++       + +EA+GL+  M 
Sbjct: 214 YSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMV 273

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              ++PD+  +N L+ A C +G +      +  M +E +  D  TY +L+ G C    V 
Sbjct: 274 LKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVN 333

Query: 226 EA 227
           +A
Sbjct: 334 KA 335



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 85/200 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P      TL+   C   K+ EAL   D +   GF  + +++  +++ L +      A  +
Sbjct: 139 PNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQM 198

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  ++   VS D+  Y+ ++   C    +     +  +M  +++     T ++L+ G C 
Sbjct: 199 LRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCI 258

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+ +EAF LLR MV    +    T+  ++ AL + G   +A   + V     +  D   
Sbjct: 259 VGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVT 318

Query: 281 FGSLGSKLIGLERFNEANFI 300
           + SL      +   N+A  +
Sbjct: 319 YSSLMDGYCLVNEVNKAKHV 338



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 70/168 (41%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S I F  ILS L + K       L   ++   + P++ + + L+  YC  G +     + 
Sbjct: 70  SVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSIF 129

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            K+ +     +  T   LV G C   +V+EA      ++  G      +Y  ++  L ++
Sbjct: 130 AKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLCKI 189

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           G    A++ +    G+ +  D  ++ ++   L   +  N+A  +  EM
Sbjct: 190 GETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEM 237


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 25/251 (9%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDL-ETVRYLLNKRARDCCFNTANTFNFIT 77
           V ++  K G    +P S  Y+ L+N       + + ++  +   +  CC  T  T+N   
Sbjct: 461 VYKNMVKDGC---KPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCC-PTIITYN--- 513

Query: 78  NTENSLSVLSDLCR----------TLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVV 126
                 +++  LC+          T   L++GF P    Y +LI  LC+ KK+D ALR+ 
Sbjct: 514 ------TLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIW 567

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           D + + G  +  +  + ++  L    +++EA+ +   MKE   SP+L  YN L+  +   
Sbjct: 568 DEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEI 627

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G++   + +   + +  L  D  TY+  + G C   R  E  +LL  ++  G      T+
Sbjct: 628 GSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITW 687

Query: 247 AHVMGALLRLG 257
           + ++ A+++ G
Sbjct: 688 SILVRAVIKYG 698



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 17/260 (6%)

Query: 45  AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS 104
           +G E D+ +   ++N+  +D   + AN        E   +++ D C+         P   
Sbjct: 433 SGEELDVFSYSSMINRFCKDGRTHDAN--------EVYKNMVKDGCK---------PNSH 475

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+ LI   C++ KI++A+++   M   G   + IT++ ++  L + ++ +EA  L + M
Sbjct: 476 VYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEM 535

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E    PD+  Y  L+   C    +     +  ++ +  L  D   ++ L+ G C AG+V
Sbjct: 536 LERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKV 595

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EAF +   M +   S    TY  +M     +G   +A           +K D   + + 
Sbjct: 596 DEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTR 655

Query: 285 GSKLIGLERFNEANFILKEM 304
              L    R  E   +L E+
Sbjct: 656 IKGLCSCNRTPEGVLLLNEV 675



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 2/205 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y TL+  L K  ++D AL ++D M   G    A+ ++ +LS   R    E+A  +
Sbjct: 191 PDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKV 250

Query: 161 ME-VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            E ++++   SP+L  Y  +L   C  G       V  +M      AD  TY  L+ G C
Sbjct: 251 WEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLC 310

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R+G V+ A  +   MV  G  +  S Y  ++     +G   +A KF    G   I+  T 
Sbjct: 311 RSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITT 370

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            +  +   L+     +EA  +LK++
Sbjct: 371 -YNIMTKGLLDSGMVSEATELLKQL 394



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 98/235 (41%), Gaps = 9/235 (3%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           + +++  V SD+ +    LD      S Y++LI   C++ +  EA +  D  + G  G+ 
Sbjct: 314 DVDSAARVYSDMVKAGLVLDV-----SVYNSLIKGFCEVGRTGEAWKFWD--STGFSGIR 366

Query: 138 AITFHPILS--VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            IT + I++  +L  G   E    L ++  +   SPD   +  L+   C  G       +
Sbjct: 367 QITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEI 426

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L+         D  +Y +++   C+ GR  +A  + + MV DG       Y  ++    R
Sbjct: 427 LEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCR 486

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +     A+K  +             + +L   L   E++ EA+ + KEM +R  K
Sbjct: 487 VSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFK 541



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 5/199 (2%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG----LSAITFHPILS 146
           R L  L    P   +++TL+    + ++  +A      ++ G FG     +  T++ IL 
Sbjct: 107 RDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILR 166

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L     ++ A  L   ++   V+PD   Y+ L++       L     +L +M    + A
Sbjct: 167 SLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQA 226

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMV-DDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           DA  Y+AL+ G  R G  E+A  +  ++V D G S   +TY  ++  L +LG + +A + 
Sbjct: 227 DAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEV 286

Query: 266 VMVCGGRDIKLDTELFGSL 284
                  + + DT  +G L
Sbjct: 287 WSRMMANNHQADTVTYGIL 305



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 61/146 (41%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +TF  ++  L        A+ ++E  +      D+ +Y+ ++  +C  G     + V K 
Sbjct: 405 VTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKN 464

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M ++    ++  Y+AL+ G CR  ++ +A  +   M  +G      TY  ++  L +   
Sbjct: 465 MVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEK 524

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSL 284
           Y +A         R  K D   + SL
Sbjct: 525 YQEASSLTKEMLERGFKPDIRTYASL 550


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 13/164 (7%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           +V+  LC+   R+DK +            P    Y +LI  LCK+ +  E L ++  M E
Sbjct: 225 TVIDALCKA-QRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKE 283

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            GFG++ I F+ +L  L +    E+A    E + +    P++  YN  +   C  G +  
Sbjct: 284 KGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDE 343

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
              +L +M E K+  D  TY +++ G C+AGR+++A  +  RM+
Sbjct: 344 AYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMM 387



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 6/173 (3%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP +  Y T+I   CK  ++D+A  ++D M E G  +  +    ++  L R  R++EA  
Sbjct: 108 FPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALE 167

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME---EEKLGA--DARTYDAL 214
             + M E   SP++  YN ++   C    +     +   ME   E   G   D  +Y  +
Sbjct: 168 QFKSMGE-ECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTV 226

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           +   C+A RV++A+   +RM   G +    TY+ ++  L ++   ++ ++ ++
Sbjct: 227 IDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLL 279



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 21/226 (9%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           ++D+VNA G    L+T   L++      C   A++       E++L +   + R      
Sbjct: 418 HEDMVNA-GFIPGLQTYNVLMD------CVCGADS------VESALEIYHKMKRK----- 459

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P  + Y  LI  LC+ +++DEA   +D+M       +    H ++ VL +   ++EA
Sbjct: 460 KRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEA 519

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             +++ + E+   P    +  L+     +    A S +L+        ADA TY   V  
Sbjct: 520 CSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRS---PGFVADAATYSLCVAE 576

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            C+AG+ +EA  ++ +MV  G      TY  V+ +L  L     A+
Sbjct: 577 ICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAI 622



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 13/175 (7%)

Query: 84  SVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           S++   C+   R+DK              P    + TL+    + KK  EA RV + M  
Sbjct: 365 SIIDGFCKA-GRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVN 423

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            GF     T++ ++  +     +E A  +   MK  +  PD   Y  L+   C    +  
Sbjct: 424 AGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDE 483

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
               L  ME + +  +     ALV   C+ G V+EA  +L  +V+ G   L  T+
Sbjct: 484 AKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETF 538



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           GF  +A T   +L+   + KR EEA  L++   E    P+   Y  ++  +C  G +   
Sbjct: 71  GFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQA 130

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L +M+E  +  D   +  L+ G CR GR++EA    + M ++    +  TY  V+  
Sbjct: 131 FELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVI-TYNTVVNG 189

Query: 253 LLRLGYYAQAVKF 265
           L +     +A++ 
Sbjct: 190 LCKANRIDEALEL 202



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 32/194 (16%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE------------------------- 131
           D   P  +    L+  LCK  ++DEA  V+D + E                         
Sbjct: 494 DNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEA 553

Query: 132 -------GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
                   GF   A T+   ++ + +  + +EA  ++E M    V PD   Y  +L + C
Sbjct: 554 ASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLC 613

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
               + +     +KM          TY  L+  AC A   +EAF +   MV  G +    
Sbjct: 614 GLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQ 673

Query: 245 TYAHVMGALLRLGY 258
           T   +   L   GY
Sbjct: 674 TMRTLSSCLRDAGY 687


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 3/200 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T+I   CK +++  A  V+  M + G   + +TF+ +L  L    +++EA  +
Sbjct: 213 PDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAM 272

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M E    P    Y  L+T +     +   +     M    +  +  TY AL+ G C 
Sbjct: 273 FEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCD 332

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVMVCGGRDIKL--D 277
           A +VE+A  +L+RM   G+     TY  V+GAL + G   +A K F    G R  K   D
Sbjct: 333 ANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPD 392

Query: 278 TELFGSLGSKLIGLERFNEA 297
           +  + ++   L    +F EA
Sbjct: 393 SYAYSTIVYWLCRQSKFLEA 412



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 13/224 (5%)

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           LSD C +L R+        +Y+ L   LCK  +ID AL V   M E     S +T++ +L
Sbjct: 133 LSDEC-SLDRI--------SYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLL 183

Query: 146 SVLTRGKRMEEAWGLMEVMKEIR----VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
               R  RME+A  L+E M E +    V PD+ +YN +++ +C    L     VL++M +
Sbjct: 184 YGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIK 243

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
                +  T++ L+ G C  G+++EA  +   MV+        TY  ++    R     +
Sbjct: 244 SGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDK 303

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           A  + +    R ++ +   + +L   L    +  +A  ILK M+
Sbjct: 304 ANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMS 347



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  ++  LC   K D AL ++  M       +    + ++S L +  +++ A+ 
Sbjct: 69  LPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYE 128

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + + +   S D  +YN L    C    +     V  +MEE  +     TY+ L+ G C
Sbjct: 129 LYKRLSD-ECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYC 187

Query: 220 RAGRVEEAFVLLRRMVD--DGQSVLYSTYAH 248
           RAGR+E+A  LL  M++   G  V+   Y++
Sbjct: 188 RAGRMEQAMTLLEEMIEGKKGSDVVPDMYSY 218



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 8/210 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P +  V R   KSG  P+  T   ++ L++       L+    +        C  TA T
Sbjct: 231 LPTARYVLRRMIKSGCSPNVVT---FNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVT 287

Query: 73  FN-FITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           +   IT    +L +       +  L +G  P    Y  LIG LC   K+++AL ++  M+
Sbjct: 288 YTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMS 347

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLM-EVM--KEIRVSPDLTAYNYLLTAYCFKG 187
             G   + +T+  ++  L +G ++E A  L  + M  +  +  PD  AY+ ++   C + 
Sbjct: 348 STGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQS 407

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLG 217
                     +M E KL A    Y A+  G
Sbjct: 408 KFLEAYEYFLRMVESKLVAKPHIYKAMADG 437


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +D L+    ++ ++ E LR    M   GF  + IT + +L+ L +    +  W + E M
Sbjct: 190 VFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEM 249

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +   ++P+L  +N L    C  G+    +  L+KMEEE    D  TY+ L+   CR GR+
Sbjct: 250 ERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRL 309

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++AF L + M   G      +Y  +M  L + G   +A +       R +  D   + +L
Sbjct: 310 DDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTL 369

Query: 285 GSKLIGLERFNEANFILKEM 304
                   +  E+  +L +M
Sbjct: 370 IHGYCKEGKMQESRSLLHDM 389



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 96/206 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L   LCK     +  + ++ M E GF    +T++ +++   R  R+++A+ L
Sbjct: 256 PNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYL 315

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M    V PDL +Y  L+   C +G +     +  +M    L  D  TY+ L+ G C+
Sbjct: 316 YKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCK 375

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+++E+  LL  M+ +G S    T   ++    + G +  A+  V+      + +  ++
Sbjct: 376 EGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDI 435

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  L   L    R   A  +L+ M+K
Sbjct: 436 YSYLIVALCRENRPFAAKNLLERMSK 461



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 13/233 (5%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           ++++  CR   RLD  F            P   +Y  L+  LCK  ++ EA ++   M  
Sbjct: 298 TLINSYCRK-GRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVH 356

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T++ ++    +  +M+E+  L+  M    +SPD      L+  Y  +G   +
Sbjct: 357 RGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLS 416

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              ++ +++   +      Y  L++  CR  R   A  LL RM  DG       Y  ++ 
Sbjct: 417 ALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIK 476

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +  +    A+A+   M    ++IK +   + ++   L  L R  E   ++ EM
Sbjct: 477 SFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEM 529



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 48/115 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C+   I EAL +   M +     +  T+  ++  L+R  R  E   L
Sbjct: 466 PELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESL 525

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +  M    + PDL     L   YC + ++     +L    +E    D  +++AL+
Sbjct: 526 VGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALI 580


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ LI +LCK ++ D+A R+   MA  G   + +T+  ++  L +   +E+A  L
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M++  +   +  YN L+  YC +G+L    G+L  M +E L   A +Y  L+ G CR
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G +     L R M + G
Sbjct: 456 NGDLSSCMELHREMAERG 473



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 73/136 (53%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y  LI  LCK   I++AL + D M + G  ++   ++ +++   +   ++ A GL
Sbjct: 371 PNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGL 430

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  ++P   +Y+ L+   C  G+L++   + ++M E  +  +  T+ AL+ G C+
Sbjct: 431 LSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCK 490

Query: 221 AGRVEEAFVLLRRMVD 236
             +++EA  L  +M+D
Sbjct: 491 DKKMDEAARLFDKMID 506



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TL+   C++++++ ALR+   M   GF  S      ++  L + + +EEA+ L   + 
Sbjct: 271 YRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLG 330

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           ++ + P++ AYN L+   C          + K+M    L  +  TY  L+   C+ G +E
Sbjct: 331 DLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIE 390

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +A  L  +M D G  V    Y  ++    + G
Sbjct: 391 DALCLFDKMRDKGIKVTVYPYNSLINGYCKQG 422



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDLCRTLA 94
           Y+ L+N    +  L+  R LL+   ++    TA +++ +         LS   +L R +A
Sbjct: 411 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA 470

Query: 95  RLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
             ++G    +  +  LI   CK KK+DEA R+ D M +     + +TF+ ++        
Sbjct: 471 --ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGN 528

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           + +A+ L + M E+ + PD   Y  L++  C    ++  +  +  +E      +  +  A
Sbjct: 529 IRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTA 588

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L+ G  R GR  E + L   M   G  +   ++  ++ A L+
Sbjct: 589 LLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALK 630



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E +L +  D+ R       GF P ++    +I  L K + ++EA  +   + + G   + 
Sbjct: 285 EMALRITHDMIRL------GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
             ++ ++  L + +R ++A  L + M    + P+   Y  L+ A C +G +     +  K
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M ++ +      Y++L+ G C+ G ++ A  LL  MV +G +   ++Y+ ++  L R G 
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  ++       R I  +   F +L +     ++ +EA  +  +M
Sbjct: 459 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKM 504



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 35/221 (15%)

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           V+ +    G  ++  T   IL  L + ++   A  L + M +  V  D   Y   + AYC
Sbjct: 150 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYC 209

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSV 241
              NL    G++ +ME E + A A  Y+ L+ G C+  RV+EA  +   MV+ G     V
Sbjct: 210 ESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEV 269

Query: 242 LYSTYAH-------------VMGALLRLGYYAQAVK-----------------FVMVCGG 271
            Y T  +             +   ++RLG+                       F + C  
Sbjct: 270 TYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKL 329

Query: 272 RDIKLDTELFG--SLGSKLIGLERFNEANFILKEMNKRDLK 310
            D+ +   +F   +L  KL   ERF++A+ + KEM  R L+
Sbjct: 330 GDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLE 370



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 106/256 (41%), Gaps = 24/256 (9%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           +S ++ R   + G  PD+    +Y  +++A   E   E +   LN      C++      
Sbjct: 636 KSCVLFREMKEQGVKPDD---IFYTCMIDALSKE---ENMIQALN------CWDQMVVDG 683

Query: 75  FITNTENSLSVLSDLCRT---------LARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL 123
           +  NT     ++++LC++            +  G   P K  Y+  +        +++A 
Sbjct: 684 YSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAK 743

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +   M +G    S ++F+ ++  L +  +++EA  LM  + E   SPD  +Y+ ++   
Sbjct: 744 DLHSAMLQGHLA-SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHEL 802

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C  G++     +  +M  + L  D   Y+  +      G  ++A  +   M+  G    +
Sbjct: 803 CKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNW 862

Query: 244 STYAHVMGALLRLGYY 259
            TY  ++  +  + +Y
Sbjct: 863 DTYRALLSGISLMLHY 878



 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 18/198 (9%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           YD +V   G + D  T R L++        + AN   F+ + ENS +VL++   +L  L 
Sbjct: 536 YDQMVEM-GLKPDNYTYRSLISGLCLTSGVSKAN--EFVADLENSYAVLNNF--SLTALL 590

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
            GF R+              +  E   + D MA  G  L  ++F  I+    +    E++
Sbjct: 591 YGFFREG-------------RFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKS 637

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L   MKE  V PD   Y  ++ A   + N+        +M  +    +  T+  L+  
Sbjct: 638 CVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINN 697

Query: 218 ACRAGRVEEAFVLLRRMV 235
            C++G +  A +L + M+
Sbjct: 698 LCKSGYLGSAELLCKEML 715



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 84/204 (41%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+  LCK  ++ EA+ V ++M   G     +T+  ++    R + +E A  +   M 
Sbjct: 236 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMI 295

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            +   P     ++++     K  +     +  K+ +  +  +   Y+AL+   C+  R +
Sbjct: 296 RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFD 355

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  L + M   G      TYA ++ AL + G    A+        + IK+    + SL 
Sbjct: 356 DADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLI 415

Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
           +        + A  +L  M K  L
Sbjct: 416 NGYCKQGSLDRARGLLSGMVKEGL 439


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 6/228 (2%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILS 146
           DL + +AR+ K  P    +  L+G + +LK    A+ +V  M +  G     IT + +++
Sbjct: 62  DLFQGMARM-KPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLNIVIN 120

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L R K +   + ++  M ++ + P +     L+   C +GN+    G+   ME+     
Sbjct: 121 CLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPL 180

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D  TY  L+ G C+ G    A   LR+M +         Y+ +M  L + G  ++A+   
Sbjct: 181 DVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLC 240

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
               G+ ++ +   +  L   L    R+ EA  +L EM    +KMG +
Sbjct: 241 SEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEM----MKMGMR 284



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 3/151 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++  LCK   + EAL +   M   G   + +T+  ++  L    R +EA  L
Sbjct: 215 PNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSL 274

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M ++ + PDL   N L+ A+C +G +     V+  M     G D  TY++L+   C 
Sbjct: 275 LDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCL 334

Query: 221 AGRVEEAFVLLRRMVDDGQ---SVLYSTYAH 248
             ++ EA  +   MV  G+    V++++  H
Sbjct: 335 QNKMNEAMRVFHLMVSRGRLPDIVVFTSLIH 365



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 3/224 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + L+   CK  K+ +A  V+  M   G G    T++ ++ +     +M EA  +
Sbjct: 285 PDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRV 344

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M      PD+  +  L+  +C   N+     +L++M +     D  T+  L+ G C+
Sbjct: 345 FHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQ 404

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR   A  L   M   GQ     T A ++  L +    ++AV         ++ L+  +
Sbjct: 405 AGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVI 464

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINVK 324
           +  L   +    + N A  +   +  + L++   +   Y I +K
Sbjct: 465 YSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYI---YTIMIK 505



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 35/197 (17%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI   C   K++EA+RV  +M   G     + F  ++    + K + +A  L
Sbjct: 320 PDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHL 379

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKG-------------------NLTATSGVL----- 196
           +E M ++   PD+  +  L+  +C  G                   NL   + +L     
Sbjct: 380 LEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCK 439

Query: 197 -----------KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
                      K ME+  L  +   Y  L+ G C AG++  A+ L   +   G  +    
Sbjct: 440 ENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYI 499

Query: 246 YAHVMGALLRLGYYAQA 262
           Y  ++  L + G   +A
Sbjct: 500 YTIMIKGLCKQGSLDKA 516



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 1/180 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P  + + TLIG  C+  +   A  +   M + G   +  T   IL  L +   + EA
Sbjct: 387 GFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEA 446

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L + M++  +  ++  Y+ LL   C  G L A   +   +  + L  +   Y  ++ G
Sbjct: 447 VSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKG 506

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+ G +++A  LL  M ++G      TY   +  LL     A+++K++ +   +   +D
Sbjct: 507 LCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVD 566



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 62/157 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC   +  EA  ++D M + G        + ++    +  ++ +A  +
Sbjct: 250 PNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSV 309

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M      PD+  YN L+  YC +  +     V   M       D   + +L+ G C+
Sbjct: 310 IGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCK 369

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              + +A  LL  M   G     +T+  ++G   + G
Sbjct: 370 DKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAG 406



 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 61/153 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P       ++  LCK   + EA+ +   M +    L+ + +  +L  +    ++  AW L
Sbjct: 425 PNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWEL 484

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    +  ++  Y  ++   C +G+L     +L  MEE     +  TY+  V G   
Sbjct: 485 FSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLT 544

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
              +  +   L  M D G SV  +T   ++  L
Sbjct: 545 KKEIARSIKYLTIMRDKGFSVDAATTEFIINYL 577


>gi|326498263|dbj|BAJ98559.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 1/185 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           F  K+ +D +   L    + DEA  +V+ M   G     IT+  ++  L +  + +EA  
Sbjct: 331 FKTKNVFDGIHRALTSNGRFDEAAEIVERMRTAGHQPDNITYSQLIFGLCKAAKCDEARQ 390

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +++ M+    +PDL  +  L+  +C  G +      L +M E+ L ADA   D +V G C
Sbjct: 391 VLDEMEAEGCTPDLKTWTMLIQGHCAAGEVDKALQYLTEMIEKDLEADADLLDVMVKGLC 450

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYS-TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           R  + + A+ L   MVD+ +   +  TY H++  LLR+    +A+  +     R      
Sbjct: 451 RQDKFDAAYTLFVEMVDNAKLTPWQGTYKHIIAELLRVKKLEEALALLKSMKARKFPPFA 510

Query: 279 ELFGS 283
           + F S
Sbjct: 511 DPFPS 515



 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 54/118 (45%)

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G     + ++++M       D  TY  L+ G C+A + +EA  +L  M  +G +    T+
Sbjct: 348 GRFDEAAEIVERMRTAGHQPDNITYSQLIFGLCKAAKCDEARQVLDEMEAEGCTPDLKTW 407

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             ++      G   +A++++     +D++ D +L   +   L   ++F+ A  +  EM
Sbjct: 408 TMLIQGHCAAGEVDKALQYLTEMIEKDLEADADLLDVMVKGLCRQDKFDAAYTLFVEM 465


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 13/237 (5%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           VLS LC++  +L+K              P   +Y+TLI   C    +  A ++ ++M + 
Sbjct: 205 VLSALCKS-GKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKN 263

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G   + +TF+ ++    +  ++ EA      MK + V+P+   YN L+  Y   GN    
Sbjct: 264 GLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMA 323

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             V ++M    + AD  TY+AL+LG C+ G+ ++A  L++ +  +      STY+ ++  
Sbjct: 324 GKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISG 383

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                   +A +            + + F  L S  +  E F  A  +L +M  R +
Sbjct: 384 QCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARSM 440



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 120/249 (48%), Gaps = 8/249 (3%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C ++   F+ +  T   ++   +     +R+ D GF P   + +  +  L    ++D AL
Sbjct: 125 CDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIAL 184

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
                M       ++ TF+ +LS L +  ++E+A  ++  M+ + ++P++ +YN L+  +
Sbjct: 185 TFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGH 244

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA---FVLLRRMVDDGQS 240
           C KG L+  + +   M +  L  +  T+++L+ G C+ G++ EA   F  ++ M     +
Sbjct: 245 CNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNT 304

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
           V Y+T  +  G +       +  + +M  G   +K D   + +L   L    +  +A F+
Sbjct: 305 VTYNTLINGYGQVGNSNMAGKVYEEMMRNG---VKADILTYNALILGLCKEGKTKKAAFL 361

Query: 301 LKEMNKRDL 309
           +KE++K +L
Sbjct: 362 VKELDKENL 370



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 2/216 (0%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R+    PR   +D+L      + K   A  V   M + GF  +  + +  LS L    R+
Sbjct: 123 RMCDSSPR--VFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRV 180

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A      M+  R+SP+   +N +L+A C  G L     VL++ME   +  +  +Y+ L
Sbjct: 181 DIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTL 240

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C  G +  A  L   M  +G      T+  ++    + G   +A +F       ++
Sbjct: 241 IAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNV 300

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             +T  + +L +    +   N A  + +EM +  +K
Sbjct: 301 TPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVK 336


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 122/275 (44%), Gaps = 23/275 (8%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-----KSAY 106
           E V  L N+  R+C          +T    + S+L      + RL+ GF       KS +
Sbjct: 73  ELVVSLFNRMIRECTIK-------VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGW 125

Query: 107 -------DTLIGRLCKLKKIDEALRV-VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
                  + L+  LC  K++ EA+ + V  M E G     ++++ +L      KR EEA 
Sbjct: 126 RVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEAL 185

Query: 159 GLMEVMKEIR---VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            L+ +M + +     P++ +Y  ++  +  +G +     +  +M +  +  +  TY  ++
Sbjct: 186 ELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVI 245

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G C+A  V+ A  + ++M+D G      TY  ++   L +G + + V+ +       +K
Sbjct: 246 DGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLK 305

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            D   +GSL + L    R  EA F+   M ++ +K
Sbjct: 306 PDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIK 340



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 80/162 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++L+  LC + K ++A      M   G     + F+ IL  L    ++ +A  L
Sbjct: 446 PNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRL 505

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M+ +   P + +Y  L+  +C  G +   +  L  M    L  D  TY+ L+ G CR
Sbjct: 506 IDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCR 565

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AGR+++A+ + R M+ +G +    TY+ ++  L     +++A
Sbjct: 566 AGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEA 607



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 1/216 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG  P    Y+ LI     + K  E +R+++ M+  G      T+  +L+ L    R 
Sbjct: 265 IDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC 324

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L + M    + P++  Y  L+  Y  KG L+    +L  M E  L  D   ++ +
Sbjct: 325 REARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
                +   ++EA  +  +M   G S     Y  ++ AL +LG    AV          +
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGV 444

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             +  +F SL   L  ++++ +A     EM  + ++
Sbjct: 445 APNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIR 480



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 2/216 (0%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           +T+N + +   S+    ++ R L  +   G  P    Y +L+  LC   +  EA  + D 
Sbjct: 274 DTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDS 333

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   +   +  ++        + E   L+ +M E  +SPD   +N + TAY  K  
Sbjct: 334 MIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAM 393

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +     +  KM+++ L  D   Y AL+   C+ GRV++A +   +M+++G +     +  
Sbjct: 394 IDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNS 453

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++  L  +  + +A +F      + I+ D   F ++
Sbjct: 454 LVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTI 489



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 1/187 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L++G  P    ++T++  LC   ++ +A R++D+M   G     I++  ++       R+
Sbjct: 475 LNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRI 534

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA   ++VM  + + PD   YN LL  YC  G +    GV ++M    +     TY  +
Sbjct: 535 DEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTI 594

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G     R  EA  L   M+  G+      Y  ++  L +     +A K       +D 
Sbjct: 595 LHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDF 654

Query: 275 KLDTELF 281
           +L+   F
Sbjct: 655 QLEITTF 661



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 72/157 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y TLIG  C + +IDEA + +D+M   G      T++ +L    R  R+++A+G+
Sbjct: 516 PGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGV 575

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    ++P +  Y+ +L         +    +   M       +   Y+ ++ G  +
Sbjct: 576 FREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSK 635

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              V+EAF L + +      +  +T+  ++GAL + G
Sbjct: 636 NNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSG 672



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 67/160 (41%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++  L K   +DEA ++   +    F L   TF+ ++  L +  R E+A  L   + 
Sbjct: 626 YNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATIS 685

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+  Y  +      +G L     +   ME+     ++R  +ALV      G + 
Sbjct: 686 SYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDIT 745

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            A   L ++ +   S+  ST A ++  L R  Y+  A   
Sbjct: 746 RAGAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHHATSL 785


>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 3/138 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LCK +KIDEA  + ++M E G   S  TFH    +L   +  EE + L
Sbjct: 376 PDAITYNSLIKPLCKARKIDEAKEIFNVMLERGISPSIRTFHAFFRIL---RVKEEVFEL 432

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MKE+  +P +  Y  L+  +C    L     +   M E+ +G D  +Y  L+ G   
Sbjct: 433 LDKMKELGCNPTIETYIMLIRKFCRWRQLDEVKRIWNAMREDGIGHDRSSYIVLIHGLFL 492

Query: 221 AGRVEEAFVLLRRMVDDG 238
             +VEEA+     M + G
Sbjct: 493 NCKVEEAYKYYIEMQEKG 510



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 12/195 (6%)

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG---------FPRKS-AYDTLIGRLCKL-KKIDE 121
           FNF         +LS LCR     D           FP  + +++ ++   C L      
Sbjct: 232 FNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLDTKSFNIILNGWCNLIVSARN 291

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A R+ + M++       +++  I+S  ++  ++     L E MK+  ++PD   YN ++ 
Sbjct: 292 AERIWEEMSKRRIQHDVVSYASIISCYSKSSKLYRVLQLFEQMKKRNITPDRKVYNAVIF 351

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
           +      +     ++ KME+  +  DA TY++L+   C+A +++EA  +   M++ G S 
Sbjct: 352 SLAKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLCKARKIDEAKEIFNVMLERGISP 411

Query: 242 LYSTYAHVMGALLRL 256
              T+ H    +LR+
Sbjct: 412 SIRTF-HAFFRILRV 425



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+ +I  L K + + EA+ ++  M +      AIT++ ++  L + ++++EA  +
Sbjct: 341 PDRKVYNAVIFSLAKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLCKARKIDEAKEI 400

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             VM E  +SP +  ++        K  +     +L KM+E        TY  L+   CR
Sbjct: 401 FNVMLERGISPSIRTFHAFFRILRVKEEVFE---LLDKMKELGCNPTIETYIMLIRKFCR 457

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
             +++E   +   M +DG     S+Y  ++  L 
Sbjct: 458 WRQLDEVKRIWNAMREDGIGHDRSSYIVLIHGLF 491


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 87/197 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  LI   CK      A  ++D+M + GF  +  T++ I+  L +  R  EA+ L
Sbjct: 402 PNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKL 461

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +    +  +  D   Y  L++ +C + +      +  +M +  L  D  TY+ L+   CR
Sbjct: 462 LRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCR 521

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +VEE+  L    V  G      TY  ++    R G+ + A+KF         K D+  
Sbjct: 522 QKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSIT 581

Query: 281 FGSLGSKLIGLERFNEA 297
           +G+L S L    + +EA
Sbjct: 582 YGALISGLCNESKLDEA 598



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 82/167 (49%), Gaps = 1/167 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + +LI  LCK+  I +A  +++ M   G+  +  T   ++  L +    E+A+ L
Sbjct: 296 PNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRL 355

Query: 161 -MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +++++     P++  Y  ++  YC +  L     +L +M+E+ L  +  TY  L+ G C
Sbjct: 356 FLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHC 415

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +AG    A+ L+  M  +G +    TY  ++  L + G + +A K +
Sbjct: 416 KAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLL 462



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           K  Y  LI   C+     +AL +   M + G      T++ +++   R K++EE+  L E
Sbjct: 474 KVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFE 533

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
               + + P    Y  ++  YC  G++++      KM +     D+ TY AL+ G C   
Sbjct: 534 EAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNES 593

Query: 223 RVEEAFVLLRRMVDDGQS 240
           +++EA  L   M+D+G S
Sbjct: 594 KLDEACQLYETMIDNGLS 611



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 70/163 (42%)

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           L R D   P    Y  +I   CK +K++ A  ++  M E G   +  T+  ++    +  
Sbjct: 359 LVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAG 418

Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
               A+ LM++M +   +P++  YN ++   C KG       +L++  +  L AD  TY 
Sbjct: 419 NFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYT 478

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            L+   CR    ++A  +  RM   G      TY  ++    R
Sbjct: 479 ILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCR 521



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 75/153 (49%), Gaps = 2/153 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  ++Y  ++   C++ +I +  R +  M E G+ +   T   ++S  +    +  A+  
Sbjct: 226 PDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWY 285

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +   ++ ++P+L  ++ L+   C  G++     +L++M  +    +  T+ AL+ G C+
Sbjct: 286 FKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCK 345

Query: 221 AGRVEEAFVLLRRMV--DDGQSVLYSTYAHVMG 251
            G  E+AF L  ++V  D+ +  +Y+    + G
Sbjct: 346 KGWTEKAFRLFLKLVRSDNYKPNVYTYTCMING 378



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P K  Y ++I   C+   I  A++    M + G    +IT+  ++S L    +++EA  
Sbjct: 541 LPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQ 600

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L E M +  +SP       L   YC +G+ +AT+ ++ +  E+KL    RT + L+   C
Sbjct: 601 LYETMIDNGLSPCEVTRVTLAYEYCKQGD-SATAMIILERLEKKLW--IRTVNTLIRKLC 657

Query: 220 RAGRVEEAFVLLRRMVDDGQSV 241
              +V  A +   +++D   +V
Sbjct: 658 SEKKVGVAALFFHKLLDKDLNV 679



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 93/237 (39%), Gaps = 36/237 (15%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           ++    ++ K+ EA+ +V  M   G  L A   + ++ V      ++ A  + + M +  
Sbjct: 164 MVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRA 223

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART------------------ 210
           V PD T+Y  ++  YC  G ++     LK M E     D  T                  
Sbjct: 224 VVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAF 283

Query: 211 -----------------YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
                            + +L+ G C+ G +++AF +L  MV  G      T+  ++  L
Sbjct: 284 WYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGL 343

Query: 254 LRLGYYAQAVK-FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + G+  +A + F+ +    + K +   +  + +     E+ N A  +L  M ++ L
Sbjct: 344 CKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGL 400



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 101/231 (43%), Gaps = 7/231 (3%)

Query: 86  LSDLCRTLA-RLDKGFPRKSAYDTL-IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           +SD+ R L   +++G+   +A  TL I    +   ++ A        + G   + I F  
Sbjct: 244 ISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSS 303

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG-NLTATSGVLKKMEEE 202
           +++ L +   +++A+ ++E M      P++  +  L+   C KG    A    LK +  +
Sbjct: 304 LINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSD 363

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
               +  TY  ++ G C+  ++  A +LL RM + G     +TY  ++    + G + +A
Sbjct: 364 NYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRA 423

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
            + + + G      +   + ++   L    RF EA  +L    +R LK G 
Sbjct: 424 YELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLL----RRGLKSGL 470


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 1/142 (0%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE-GGFGLSAITFHPILSVLTRGKRMEE 156
           K  P       L+  LCK ++++EA  +++ M E G    S +T+  ++  L +  R+++
Sbjct: 325 KCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDD 384

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+ +++ M+     PD+  Y  ++ A+C  G L     + ++M E     D   Y+ L+ 
Sbjct: 385 AYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIR 444

Query: 217 GACRAGRVEEAFVLLRRMVDDG 238
           G CRA +V+EA  ++  M   G
Sbjct: 445 GYCRAAKVDEAIAMIEEMAGRG 466



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 1/206 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y + I  LCK  K+DEA  V   M E G     ++++ I+  L +  R+ EA  LM+   
Sbjct: 263 YTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAM 322

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGACRAGRV 224
           E +  P +     L+   C    +     +L++M E         TY A++ G C+A R+
Sbjct: 323 ERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRL 382

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++A+V+L++M   G      TY  ++ A  ++G   +A +       R   LD   +  L
Sbjct: 383 DDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNIL 442

Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
                   + +EA  +++EM  R ++
Sbjct: 443 IRGYCRAAKVDEAIAMIEEMAGRGIQ 468



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 9/210 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG----KRMEE 156
           P   +Y+ +I  LCK  ++ EA  ++D   E       +   P+ +VL  G    +R+EE
Sbjct: 293 PDPVSYNVIIYSLCKDNRVSEAKELMDQAMER----KCMPGVPVCTVLVDGLCKSRRVEE 348

Query: 157 AWGLMEVMKEI-RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           A  ++E M E    +P +  Y+ ++   C    L     VL+KM       D  TY A++
Sbjct: 349 ACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAII 408

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
              C+ GR++EA  L +RM + G ++    Y  ++    R     +A+  +    GR I+
Sbjct: 409 DAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQ 468

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMN 305
            +     ++   L    R  EA  ++++MN
Sbjct: 469 PNVVSLSTIVDGLCKESRVEEARLLMEKMN 498



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 6/287 (2%)

Query: 23  FTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
             +SG  PD+ T +     L  A   E+  +    +L+K         A   N       
Sbjct: 148 MVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGR 207

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
               LS L R L    +  P  S Y TLI  LCK  + DEA  + ++ A  G     I +
Sbjct: 208 IDQALS-LMRRLKGTGRS-PSGSLYSTLIDGLCKHDRHDEARELFEMAA--GDVQDVIVY 263

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
              +S L +  +++EA  +   M E   +PD  +YN ++ + C    ++    ++ +  E
Sbjct: 264 TSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAME 323

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG-QSVLYSTYAHVMGALLRLGYYA 260
            K          LV G C++ RVEEA V+L RM++ G ++    TY+ V+  L +     
Sbjct: 324 RKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLD 383

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            A   +          D   + ++      + R +EA  + + M++R
Sbjct: 384 DAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHER 430



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 1/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK ++I +A+ ++  M   G   + +TF  ++  L      ++A  +
Sbjct: 50  PDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQI 109

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +++V PD   Y  ++   C    L   +   ++M +     D  TY  LV    +
Sbjct: 110 FHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFK 169

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A + E+   +   M+  G S    TYA V+    + G   QA+  +    G        L
Sbjct: 170 ACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSL 229

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L   L   +R +EA  +  EM   D++
Sbjct: 230 YSTLIDGLCKHDRHDEARELF-EMAAGDVQ 258



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 6/217 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +IG LCK+ K+D A    + M + G     +T+  ++  L +  + E+   +
Sbjct: 120 PDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQI 179

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M     SP+L  Y  ++  YC  G +     ++++++          Y  L+ G C+
Sbjct: 180 FEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCK 239

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY--AQAVKFVMVCGGRDIKLDT 278
             R +EA  L      D Q V+   Y   +  L + G    A+AV   M+  G     D 
Sbjct: 240 HDRHDEARELFEMAAGDVQDVI--VYTSFISGLCKAGKLDEAKAVHVKMIEAG--CAPDP 295

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
             +  +   L    R +EA  ++ +  +R    G  +
Sbjct: 296 VSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPV 332


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 3/220 (1%)

Query: 87  SDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           ++ C  LA +  +GF P   AY   I    K+K +D+AL +   +   G+    + ++ +
Sbjct: 579 AEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTL 638

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++   + KR+ EA  +++ M    + P +  YN L+  +C  G++      L +M  ++ 
Sbjct: 639 INGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKER 698

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +  TY  L+ G C AGR ++A  L   M   G S    ++  ++  L + G+   A+ 
Sbjct: 699 EPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALL 758

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +    G R+   DT ++ +L +  I  +    A  ILKEM
Sbjct: 759 YFREMGERETP-DTIVYVALITSFISNKNPTLAFEILKEM 797



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 117/278 (42%), Gaps = 12/278 (4%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRA----RDCCFNTANTFNFITNTENSLSVLSDLCRTL 93
           Y++L++   +   LE    LL +      R   F   + F  +   E+    L D+ R +
Sbjct: 495 YNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGAL-DMVREM 553

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
            R+    P    Y  L+ +LCK K+  EA   +  M   GF    + +   +    + K 
Sbjct: 554 -RVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKA 612

Query: 154 MEEAWGLMEVMKEIRV---SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           +++A   +E+ ++I      PD+ AYN L+  +C    ++    +L +M  + L     T
Sbjct: 613 VDQA---LEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVT 669

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ L+ G C+ G +++AF  L RMV   +     TY  ++  L   G    A+       
Sbjct: 670 YNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMR 729

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           G+    +   F +L   L      + A    +EM +R+
Sbjct: 730 GKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERE 767



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 19/273 (6%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVLSDLCRTLARL 96
           Y+ ++N   + + ++   YLL     D         N+  N E N   ++ ++ R     
Sbjct: 409 YNSVLNGLVNGKSVDKAYYLLRAMTGD---------NYTDNFEVNKFFMVKEMVR----- 454

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
               P  +++  +I  LC   K+D AL +   M   G   + + ++ ++  L+   R+EE
Sbjct: 455 ----PDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEE 510

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
            + L++ MK     P    +N +    C + ++T    ++++M         + Y  LV 
Sbjct: 511 CYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVK 570

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
             C+  R  EA   L  MV +G       Y+  +   +++    QA++       R    
Sbjct: 571 QLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCP 630

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           D   + +L +    ++R +EA+ IL EM  + L
Sbjct: 631 DVVAYNTLINGFCKVKRVSEAHDILDEMVAKGL 663



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 57/118 (48%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +G+        L+    K  ++D+A  +++ M + G  L+  TF  ++    R  R+++A
Sbjct: 263 RGWVDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKA 322

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
             L + M++   +PD++ Y+ L+   C K  +     +L +M+E  +  D +    L+
Sbjct: 323 LQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI 380


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  L++GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMI 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 19/217 (8%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF- 100
           + A+G + D+ T   L+N   ++   + AN             VL D       LDKG  
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDAN-------------VLFD-----EMLDKGLV 238

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +++A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL+ G C+
Sbjct: 299 IDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQ 358

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  ++E  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M+  G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 80/172 (46%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E + L   M+   V PD+  Y+ L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299


>gi|242054629|ref|XP_002456460.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
 gi|241928435|gb|EES01580.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
          Length = 439

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 96/202 (47%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y+ LI  LC+  ++  AL V+ +M + G     I+F+ +L+        ++A  
Sbjct: 175 IPTVYSYNILISALCQKPELSAALDVIALMEKRGVSPDIISFNILLNGFYNNDSFDDAEK 234

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + E+MKE  + PD  +YN  L     +G +     ++++M++E    D+ +Y+ L+ G C
Sbjct: 235 VWEMMKERNIEPDEKSYNAKLRGLVSQGRVEDAVALIERMQKEGPKPDSVSYNELIRGYC 294

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GR+ EA  +   ++ +  +    T+  ++  L+  G   +A+        R  ++   
Sbjct: 295 KEGRLNEAKKVYDDLIKNECAPNRGTFHTLVPHLVEAGELDRALSCCHEIFSRKCRVHCS 354

Query: 280 LFGSLGSKLIGLERFNEANFIL 301
           L   + + LI   R  EA  I+
Sbjct: 355 LLQGVVTALIAASRMGEAKRIV 376


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C  ++I++AL V + M   G   + IT++ ++  L   ++ E+   +
Sbjct: 290 PNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDI 349

Query: 161 ME-VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +E    +   SPD   +N L+  +C  GNL     V ++M E K+  D+ TY ALV   C
Sbjct: 350 LEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLC 409

Query: 220 RAGRVEEAFVLLRRMVD-------DGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           + G  E+A  LL ++++       DG   L + Y  +   L   G   +A K
Sbjct: 410 QGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEK 461



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 115/285 (40%), Gaps = 16/285 (5%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+R    K  I +++ V       G   +  T   Y+ L+      R  E ++ +L   
Sbjct: 297 TLIRGYCAKREIEKALAVFEEMVNQGLKANNIT---YNTLIKGLCEARKFEKIKDILEGT 353

Query: 62  ARDCCFNTAN-TFNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKK 118
           A D  F+    TFN + +       L D  +   R+   K  P  + Y  L+  LC+   
Sbjct: 354 AGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGH 413

Query: 119 IDEALRVVDIMAEGGFGLSA-------ITFHPILSVLTR-GKRMEEAWGLMEVMKEIRVS 170
            ++A  ++D + E    LS          ++PI   L   GK  +      ++M+  R +
Sbjct: 414 YEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMR--RGT 471

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
            D  +Y  L+  +C +G   +   +L  M  +    D  TY++L+ G     +   A   
Sbjct: 472 QDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQS 531

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
           L +M+        ST+  ++  LL  G  +++   + +   ++I+
Sbjct: 532 LEKMLRSSHRPNSSTFHSILAKLLEQGRASESASLIQLMLDKNIR 576



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 9/174 (5%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           ++GR   L      L  ++  + G   L A  F+ ++    R    +E+  +  +MK   
Sbjct: 120 ILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHG 179

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA-----DARTYDALVLGACRAGR 223
           VSP +  +N LLT    +G     + + KK+ +E L       D  T++ L+ G C  G 
Sbjct: 180 VSPSVVTFNSLLTILLKRGR----TNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGM 235

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           V++ F +   +   G      TY  ++  L R G    A   V   G + + L+
Sbjct: 236 VDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLN 289


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169
           IG L K+ + D A R  D    GG+G +      ++S   R   + EA G++E MK   +
Sbjct: 205 IGALGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLESMKGAGL 264

Query: 170 SPDLTAYNYLLTAYCFKG--NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            P    YN ++ A C KG  +L  T G  ++M  ++L  D +T+++L+    RAG +E+A
Sbjct: 265 RPTTVTYNAVIDA-CGKGGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDA 323

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287
             L   M+  G      TY   + A+ + G    A++ ++    +++K +   + +L   
Sbjct: 324 RALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDG 383

Query: 288 LIGLERFNEANFILKEMNKRDLKM 311
              LE+++EA  + ++M    +++
Sbjct: 384 YSKLEKYDEALKLYEKMKSLGIQL 407



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 111/256 (43%), Gaps = 5/256 (1%)

Query: 33  PTSAYYDDLVNAAGHER-DLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           PT+  Y+ +++A G    DL        +  RD       TFN + +  +    L D  R
Sbjct: 266 PTTVTYNAVIDACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLED-AR 324

Query: 92  TL--ARLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            L    +  G  R    Y+T I  +CK   I+ A++V+  M       + +T+  ++   
Sbjct: 325 ALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGY 384

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
           ++ ++ +EA  L E MK + +  D   YN +L  Y   G     + V  +ME+  +  D 
Sbjct: 385 SKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDT 444

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY++L+ G  + GR++    L++ M   G +    TY+ ++    + G +  A    + 
Sbjct: 445 VTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLD 504

Query: 269 CGGRDIKLDTELFGSL 284
                +K D  LF S 
Sbjct: 505 FKESGLKPDVVLFSSF 520



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 1/201 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK-RMEEAWGLMEV 163
           A   LI    +   ++EA+ V++ M   G   + +T++ ++    +G   +    G    
Sbjct: 235 ANSALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQ 294

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M   R+ PD   +N LL+A    G+L     +  +M    +G D  TY+  +   C+ G 
Sbjct: 295 MLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGN 354

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           +E A  +L  M          TY+ ++    +L  Y +A+K         I+LD   + +
Sbjct: 355 IELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNT 414

Query: 284 LGSKLIGLERFNEANFILKEM 304
           + +  +   ++ E   +  EM
Sbjct: 415 VLAIYVKAGKYGEIAIVCDEM 435



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 62/148 (41%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T++    K  K  E   V D M + G     +T++ +++   +  R++    L++ M+
Sbjct: 412 YNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMR 471

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V+P +  Y+ L+  Y   G       V    +E  L  D   + + +    + G VE
Sbjct: 472 RRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVE 531

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            A  LL  M + G      TY  ++ A 
Sbjct: 532 WALSLLNDMTEMGIKPNVVTYNTIIDAF 559


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 3/200 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T+I   CK +++  A  V+  M + G   + +TF+ +L  L    +++EA  +
Sbjct: 213 PDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAM 272

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M E    P    Y  L+T +     +   +     M    +  +  TY AL+ G C 
Sbjct: 273 FEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCD 332

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVMVCGGRDIKL--D 277
           A +VE+A  +L+RM   G+     TY  V+GAL + G   +A K F    G R  K   D
Sbjct: 333 ANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPD 392

Query: 278 TELFGSLGSKLIGLERFNEA 297
           +  + ++   L    +F EA
Sbjct: 393 SYAYSTIIYWLCRQSKFLEA 412



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 13/224 (5%)

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           LSD C +L R+        +Y+ L   LCK  +ID AL V   M E     S +T++ +L
Sbjct: 133 LSDEC-SLDRI--------SYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLL 183

Query: 146 SVLTRGKRMEEAWGLMEVMKEIR----VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
               R  RME+A  L+E M E +    V PD+ +YN +++ +C    L     VL++M +
Sbjct: 184 YGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIK 243

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
                +  T++ L+ G C  G+++EA  +   MV+        TY  ++    R     +
Sbjct: 244 SGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDK 303

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           A  + +    R ++ +   + +L   L    +  +A  ILK M+
Sbjct: 304 ANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMS 347



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  ++  LC   K D AL ++  M       +    + ++S L +  +++ A+ 
Sbjct: 69  LPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYE 128

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + + +   S D  +YN L    C    +     V  +MEE  +     TY+ L+ G C
Sbjct: 129 LYKRLSD-ECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYC 187

Query: 220 RAGRVEEAFVLLRRMVD--DGQSVLYSTYAH 248
           RAGR+E+A  LL  M++   G  V+   Y++
Sbjct: 188 RAGRMEQAMTLLEEMIEGKKGSDVVPDMYSY 218



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 8/210 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P +  V R   KSG  P+  T   ++ L++       L+    +        C  TA T
Sbjct: 231 LPTARYVLRRMIKSGCSPNVVT---FNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVT 287

Query: 73  FN-FITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           +   IT    +L +       +  L +G  P    Y  LIG LC   K+++AL ++  M+
Sbjct: 288 YTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMS 347

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLM-EVM--KEIRVSPDLTAYNYLLTAYCFKG 187
             G   + +T+  ++  L +G ++E A  L  + M  +  +  PD  AY+ ++   C + 
Sbjct: 348 STGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQS 407

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLG 217
                     +M E KL A    Y A+  G
Sbjct: 408 KFLEAYEYFLRMVESKLVAKPHIYKAMADG 437


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  L++GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMI 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 19/217 (8%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF- 100
           + A+G + D+ T   L+N   ++   + AN             VL D       LDKG  
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDAN-------------VLFD-----EMLDKGLV 238

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +++A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL+ G C+
Sbjct: 299 IDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQ 358

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  ++E  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M+  G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 80/172 (46%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E + L   M+   V PD+  Y+ L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   CK  ++  A R+   M   G   +  TF  ++S L    RM EA  L
Sbjct: 458 PNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKL 517

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V P+   YN L+  +C +GN      +L +M E+ L  D  TY  L+ G C 
Sbjct: 518 FGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCS 577

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV EA   +  +  + Q +    ++ ++    + G    A+       GR + +D   
Sbjct: 578 TGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVC 637

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   ++  +       +LK+M+ + L+
Sbjct: 638 YSVLIYGILRQQDRRSIIDLLKQMHDQGLR 667



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 1/210 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++ GF P ++A   L+  L K   I  A  +V+ + + G   S   ++ +++ + +  ++
Sbjct: 312 IEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKL 371

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  L   M    + P+   Y+ L+ ++C +G L      L KM E  + A    Y +L
Sbjct: 372 DEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSL 431

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ G++  A  L   M+ +G       Y  ++    + G    A +      G+ I
Sbjct: 432 ISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGI 491

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +T  F +L S L    R  EAN +  EM
Sbjct: 492 SPNTYTFTALISGLCHANRMAEANKLFGEM 521



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 118/290 (40%), Gaps = 2/290 (0%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
            K   F   P+   Y+ L+N+   +  L+    L N       F    T++ + ++    
Sbjct: 344 NKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKR 403

Query: 84  SVLSDLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
             L      L ++ +   + + Y   +LI   CKL K+  A  + D M   G   + + +
Sbjct: 404 GKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIY 463

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++S   +   +  A+ L   M    +SP+   +  L++  C    +   + +  +M E
Sbjct: 464 TSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVE 523

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             +  +  TY+ L+ G C+ G    AF LL  MV+ G      TY  ++  L   G  ++
Sbjct: 524 WNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSE 583

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           A +F+    G   KL+   F +L        R ++A    +EM  R + M
Sbjct: 584 AREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAM 633



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 99/217 (45%), Gaps = 5/217 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD---L 89
           P +  Y  +++A     +L+    L +    + C     T+  + N    + ++     L
Sbjct: 668 PDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELL 727

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           CR +       P ++ Y   +  L     I++A+++ D++ EG F  + +T++ ++    
Sbjct: 728 CREMLA-SNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEG-FLANTVTYNILIRGFC 785

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  R++EA  ++  M +  +SPD  +Y+ ++  YC +G+L     + + M    +  D  
Sbjct: 786 KLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTV 845

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
            Y+ L+ G C  G + +AF L   M+  G     +TY
Sbjct: 846 AYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATY 882



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 55/114 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI   CKL +I EA  V+  M + G     I++  I+    R   ++EA  L E M 
Sbjct: 777 YNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESML 836

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
              V+PD  AYN+L+   C  G LT    +   M    +  +  TY++L+ G C
Sbjct: 837 NRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTC 890



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 12/188 (6%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G  P    Y T+I    K   +  A  + DIM   G   + +T+  +++ L +   M+
Sbjct: 663 DQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMD 722

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE-----EKLGADART 210
           +A  L   M      P+   Y       CF   LT+   + K ++      E   A+  T
Sbjct: 723 KAELLCREMLASNSLPNQNTYA------CFLDYLTSEGNIEKAIQLHDVLLEGFLANTVT 776

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ L+ G C+ GR++EA  +L  M+D G S    +Y+ ++    R G   +A+K      
Sbjct: 777 YNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESML 836

Query: 271 GRDIKLDT 278
            R +  DT
Sbjct: 837 NRGVNPDT 844



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 70/161 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +  L+   CK  ++D+AL     M   G  +  + +  ++  + R +       L++ M
Sbjct: 602 CFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQM 661

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  + PD   Y  ++ A    GNL    G+   M  E    +  TY AL+ G C+ G +
Sbjct: 662 HDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLM 721

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           ++A +L R M+        +TYA  +  L   G   +A++ 
Sbjct: 722 DKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQL 762



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 90/207 (43%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+  I  LCK +++ EA+ + ++++  G      T+  ++  L + +  E    +M  
Sbjct: 251 ATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNE 310

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M E    P   A + L+     KGN+ +   ++ K+++  +      Y+AL+   C+ G+
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           ++EA  L   M   G      TY+ ++ +  + G    A+ F+       IK     + S
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           L S    L +   A  +  EM    LK
Sbjct: 431 LISGHCKLGKLRAAKSLFDEMIANGLK 457



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 1/168 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++KG  P    Y  LI  LC   ++ EA   ++ +      L+ + F  +L    +  R+
Sbjct: 557 VEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRL 616

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A      M    V+ DL  Y+ L+     + +  +   +LK+M ++ L  D   Y  +
Sbjct: 617 DDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTM 676

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +    +AG ++ AF L   MV +G      TY  ++  L ++G   +A
Sbjct: 677 IDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKA 724



 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 54/128 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           F     +D LI    + ++  + L VV +M + G      T   +L+ L R ++   A  
Sbjct: 142 FSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALH 201

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + +    + PD+  Y  ++ + C   +      V+ +ME         TY+  + G C
Sbjct: 202 LFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLC 261

Query: 220 RAGRVEEA 227
           +  RV EA
Sbjct: 262 KNQRVWEA 269


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 10/259 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    ++ L++  G  R  +    ++ +  R  C  +  T+N + ++     +L     
Sbjct: 275 EPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVA 334

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL- 148
               ++ KG  P    Y TLI  L +  KID A+   D M   G   +  T++ ++ +  
Sbjct: 335 LKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHG 394

Query: 149 TRGKRMEEAWGLMEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            RGK  E    +M V  E R +   PD+  +N LL  +   G  +  SGV K+M++    
Sbjct: 395 VRGKFPE----MMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI 450

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  TY +L+    R G  + A  + +RM++ G     STY  V+ AL R G + QA K 
Sbjct: 451 PERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 510

Query: 266 VMVCGGRDIKLDTELFGSL 284
                 RD K D   + SL
Sbjct: 511 FAEMEERDCKPDEYSYSSL 529



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 13/222 (5%)

Query: 33  PTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTA-NTFNFITNTENSLSV-LS 87
           P +  Y  LV+A   AG  RD   V     +R  D     A  T+N + +  + ++V   
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAV----FRRMVDSGVQPAIVTYNVVLHVYSKMAVPWK 225

Query: 88  DLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKI-DEALRVVDIMAEGGFGLSAITFHPI 144
           ++   +A + +    P +  Y+TLI   C+ + +  EA +V D M   GF    +TF+ +
Sbjct: 226 EVVELVASMKEHGVAPDRYTYNTLIS-CCRRRALYKEAAQVFDEMKASGFEPDKVTFNSL 284

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L V  + +R +EA  +++ M+ +   P +  YN L+++Y   G L     + ++ME + +
Sbjct: 285 LDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGM 344

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             D  TY  L+ G  RAG+++ A V    MV +G      TY
Sbjct: 345 KPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 386



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 19/246 (7%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           PDE +   Y  L++A  + + L+ ++ L +    D         N++  T   L +++  
Sbjct: 521 PDEYS---YSSLLHAYANAKRLDKMKALSD----DIYSERIEPHNWLVKT---LVLVNSK 570

Query: 90  CRTLARLDKGF----PRKSAYD-----TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
              LA  +K F     ++ + D      ++    K + + +  +++ +M E    LSA T
Sbjct: 571 VNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAAT 630

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++ + +R    E+   ++  +K   V PD  +YN ++ AY  KG +   S +  +M+
Sbjct: 631 YNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK 690

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              L  D  TY+  V         EEA  L+R MV  G      TY  ++    R G   
Sbjct: 691 CSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLT 750

Query: 261 QAVKFV 266
            A  FV
Sbjct: 751 DAKIFV 756



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 3/137 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  Y +LI    +    D A+++   M E G      T++ +LS L RG R E+A  
Sbjct: 450 IPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEK 509

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M+E    PD  +Y+ LL AY     L     +   +  E++         LVL   
Sbjct: 510 LFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNS 569

Query: 220 RA---GRVEEAFVLLRR 233
           +       E+AF+ LR+
Sbjct: 570 KVNNLAEAEKAFLELRQ 586



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 93/207 (44%), Gaps = 4/207 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR-GKRMEEAWG 159
           P   AY  L+    +  +  +A+ V   M + G   + +T++ +L V ++     +E   
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  MKE  V+PD   YN L++    +      + V  +M+      D  T+++L+    
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 289

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +A R +EA  +++ M   G      TY  ++ + ++ G   QAV        + +K D  
Sbjct: 290 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVV 349

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNK 306
            + +L S   GL+R  + +  + E ++
Sbjct: 350 TYTTLIS---GLDRAGKIDAAIVEYDE 373



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/131 (19%), Positives = 61/131 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y++L+    +L   ++   ++  +   G      +++ ++    R  +M+EA  L   
Sbjct: 629 ATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSE 688

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           MK   + PD+  YN  + +Y           +++ M  +    + RTY+++V G CR G+
Sbjct: 689 MKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGK 748

Query: 224 VEEAFVLLRRM 234
           + +A + +  +
Sbjct: 749 LTDAKIFVSNL 759



 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY-YAQAV 263
           G DA  Y ALV    RAGR  +A  + RRMVD G      TY  V+    ++   + + V
Sbjct: 169 GPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVV 228

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           + V       +  D   + +L S       + EA  +  EM
Sbjct: 229 ELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEM 269



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           L+ Q+V + +     G  PD  T   Y  L++       ++      ++  R+ C     
Sbjct: 328 LLEQAVALKQEMEVKGMKPDVVT---YTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLC 384

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK----GF-PRKSAYDTLIGRLCKLKKIDEALRVV 126
           T+N +        V       +A  D+    GF P    ++TL+    +     E   V 
Sbjct: 385 TYNALIKMHG---VRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVF 441

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M + G+     T+  ++S  +R    + A  + + M E  + PD++ YN +L+A    
Sbjct: 442 KEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARG 501

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
           G       +  +MEE     D  +Y +L+     A R+++    ++ + DD
Sbjct: 502 GRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDK----MKALSDD 548


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 110/235 (46%), Gaps = 9/235 (3%)

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF--HPILSVL 148
            T+A+++   P    +  L+G + K+K    A+ +V  M     G+   TF  + +++ L
Sbjct: 64  HTMAKMNP-LPSVIDFTLLLGFIVKMKHYTTAISLVKEM-HSSLGIKPDTFILNVVINSL 121

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
              K +   + ++  M ++ + P +  +  L+   C KG++     ++  +E+    +D 
Sbjct: 122 CHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDV 181

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           +TY  L+ G C+ G+  EA   LR+M +   +     Y+ VM  L + G  ++A+   + 
Sbjct: 182 KTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLE 241

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
             G+ IK +   +  L   L    R+ EA  +L EM    +KMG  + D   +N+
Sbjct: 242 MSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEM----MKMGV-MPDLQSLNI 291



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC   +  EA  ++D M + G      + + ++ VL +  ++ +A  +
Sbjct: 249 PNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSV 308

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M  +   PD+  YN L+  YC +  +   + V + M       D   Y +L+ G C+
Sbjct: 309 IGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCK 368

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              + +A  LL  M+  G +    T+  ++G   ++G
Sbjct: 369 IKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVG 405



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 16/187 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++  LCK   + EAL +   M+  G   + +T+  ++  L    R +EA  L
Sbjct: 214 PNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSL 273

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M ++ V PDL + N L+   C +G +     V+  M       D  TY++L+   C 
Sbjct: 274 LDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCL 333

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTY-------------AHVMGALLRLGYYAQAVK 264
             +++EA  +   MV  G     V Y++               H++  ++++G+    V 
Sbjct: 334 QNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVT 393

Query: 265 FVMVCGG 271
           +  + GG
Sbjct: 394 WTTLIGG 400



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 82/198 (41%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   + + L+  LCK  KI +A  V+  M   G      T++ ++       +M+EA  
Sbjct: 283 MPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATR 342

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + E+M      PD+ AY  L+  +C   N+     +L +M +     D  T+  L+ G C
Sbjct: 343 VFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFC 402

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GR   A  L   M   GQ     T A ++  L +    ++A+         ++ L+  
Sbjct: 403 QVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIV 462

Query: 280 LFGSLGSKLIGLERFNEA 297
           ++  +   +    + N A
Sbjct: 463 IYSIILDGMCSAGKLNTA 480



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/178 (19%), Positives = 77/178 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI R C   ++DEA RV ++M   G     + +  ++    + K + +A  L
Sbjct: 319 PDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHL 378

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M ++  +PD+  +  L+  +C  G   A   +   M +     + +T   ++ G C+
Sbjct: 379 LDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCK 438

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           +  + EA  L   M      +    Y+ ++  +   G    A++       + ++++ 
Sbjct: 439 SQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINV 496



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 68/163 (41%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   AY +LI   CK+K I++A+ ++D M + GF    +T+  ++    +  R   A  
Sbjct: 353 LPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKE 412

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M +    P+L     +L   C    L+    +   ME+  L  +   Y  ++ G C
Sbjct: 413 LFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMC 472

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            AG++  A  L   +   G  +    Y  ++    + G   +A
Sbjct: 473 SAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKA 515



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 62/153 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P       ++  LCK + + EAL +   M +    L+ + +  IL  +    ++  A  L
Sbjct: 424 PNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALEL 483

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    +  ++ AY  ++  +  +G L     +L  MEE     D+ TY+  V G   
Sbjct: 484 FSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVA 543

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
              +  +   L  M D G SV  +T   ++  L
Sbjct: 544 EREIARSIKYLTMMRDKGFSVDATTTEMIINYL 576


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+DEA  + + M + G   + +T
Sbjct: 184 LGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    + ++++ A  + + M    +SPDL  YN L+   C KG L     ++ +M 
Sbjct: 244 FTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMI 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              L  D  +Y  L+ G+C+ G +E A  L  +M+ +   +    Y  ++  L R G   
Sbjct: 304 MNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAG 363

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D   +  + ++         A+ +L+EM +
Sbjct: 364 DAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQR 409



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TLI    KL  +DE  R+   M   G      T+  +++ L +  +++EA  L
Sbjct: 169 PSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P+   +  L+  +C    +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++   L+  M+ +G      +Y  ++    + G    A++         I+LD   
Sbjct: 289 KGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISCLCREGRAGDAEKMLREMLSVGLK 378



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 7/216 (3%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           SGA PD  T   Y  L+N    E  L+    L N+   +       TF  + +       
Sbjct: 200 SGAQPDVYT---YSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEK 256

Query: 86  LSDLCRTLAR--LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           + DL   + +  L +G  P    Y+TLI  LCK  ++ +   ++D M   G     I++ 
Sbjct: 257 V-DLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   +E A  L   M +  +  D  AY  L++  C +G       +L++M   
Sbjct: 316 TLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            L  D  TY  ++   C+    + A  LLR M  DG
Sbjct: 376 GLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           E G+  S   F+ ++    +   M  A  + + + +  + P + ++N L+  Y   G+L 
Sbjct: 129 ECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLD 188

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYA 247
               +   M       D  TY  L+ G C+ G+++EA  L   M+D+G     V ++T  
Sbjct: 189 EGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLI 248

Query: 248 H 248
           H
Sbjct: 249 H 249


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK  K+D+   + D M + G   + +TF  ++    +  R++ A  +
Sbjct: 208 PDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEI 267

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    +SPDL  YN L+   C KG+L     ++ +M  + L  D  TY  L+ G+C+
Sbjct: 268 YKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCK 327

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G +E AF    RM+ +   +    Y  ++  L + G    A K +
Sbjct: 328 EGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 373



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  ++E  R+   M   G      T+  +++ L +  +M++   L
Sbjct: 173 PSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNEL 232

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 233 FDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCK 292

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 293 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVA 352

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 353 YTALISGLCQEGRSVDAEKMLREMLSVGLK 382



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P    + TLI   CK  ++D A+ +   M         +T++ ++  L +   +
Sbjct: 237 LDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDL 296

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M    + PD   Y  L+   C +G+L        +M +E +  D   Y AL
Sbjct: 297 KQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTAL 356

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 357 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 399



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+   CK  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 132 LECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 191

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E + L + M+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 192 NEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTL 251

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +
Sbjct: 252 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLI 303



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 65/152 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK   + +A  ++D M+  G     IT+  ++    +   +E A+  
Sbjct: 278 PDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEY 337

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  +  D  AY  L++  C +G       +L++M    L  +  TY  ++   C+
Sbjct: 338 RXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 397

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            G V     L++ M  DG      TY  +M  
Sbjct: 398 KGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 94  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKE 153

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     + K M+   +  D  TY
Sbjct: 154 GEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTY 213

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++   L   M+D G
Sbjct: 214 SVLINGLCKESKMDDXNELFDEMLDXG 240



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 55/135 (40%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E   E      L  +N L+
Sbjct: 88  DAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILM 147

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
            ++C +G +     V   + +  L     +++ L+ G  + G + E F L + M   G  
Sbjct: 148 HSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQ 207

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 208 PDVYTYSVLINGLCK 222


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 190 LGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVT 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L   + ++ +M 
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMS 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF    RM+++   +    Y  ++  L + G   
Sbjct: 310 MKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXV 369

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D   +  + ++        + + +LKEM +
Sbjct: 370 DAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQR 415



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 92/210 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+    +L  +DE  R+   M   G      T+  +++ L +  +M++A  L
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANEL 234

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 235 FDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCK 294

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A +        +I+LD   
Sbjct: 295 KGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVA 354

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+ M    LK
Sbjct: 355 YTALISGLCQEGRXVDAEKMLRXMLSVGLK 384



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 5/192 (2%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK   I  A  V D + + G   S ++++ +++   R   +
Sbjct: 134 LECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 193

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M    V PD+  Y+ L+   C +  +   + +  +M  + L  +  T+  L
Sbjct: 194 DEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTL 253

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           + G C+ GRV+ A  + ++M+   QS+L    TY  ++  L + G   QA   +     +
Sbjct: 254 IDGHCKNGRVDLAMEIYKQML--SQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMK 311

Query: 273 DIKLDTELFGSL 284
            +K D   + +L
Sbjct: 312 GLKPDKITYTTL 323



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI   CK   +B A      M E    L  + +  ++S L +  R  +A  +
Sbjct: 315 PDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKM 374

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +  M  + + PD   Y  ++  +C KG++   S +LK+M+ +       TY+ L+ G
Sbjct: 375 LRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 89/228 (39%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N     +++   C+   R+
Sbjct: 205 ASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKN-GRV 263

Query: 97  DKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+ LI  LCK   + +A  ++  M+  G     IT+  +
Sbjct: 264 DLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTL 323

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+     M E  +  D  AY  L++  C +G       +L+ M    L
Sbjct: 324 IDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGL 383

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             DA TY  ++   C+ G V +   LL+ M  DG      TY  +M  
Sbjct: 384 KPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 54/135 (40%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F     T   +L  L + K  +  WG  + + E      L  +N L+
Sbjct: 90  DAIECYRLTREHKFXXPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPXSLYFFNILM 149

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +Y+ L+ G  R G ++E F L   M   G  
Sbjct: 150 HRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQ 209

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 210 PDVYTYSVLINGLCK 224


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 2/240 (0%)

Query: 72   TFNFITNTENSLSVLSDLCRTLARL-DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIM 129
            T+N + N    +  L D  +    L D+G      +Y+ LI   CK +KIDEA R  + M
Sbjct: 1227 TYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEM 1286

Query: 130  AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
               G   S +T++ ++  L +  R+  A  L   M+       L+ Y  LL   C  G+L
Sbjct: 1287 RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHL 1346

Query: 190  TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                 + + +++ +   +   +  L+ G CRAG++EEA+     +  +G       Y  +
Sbjct: 1347 EEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNIL 1406

Query: 250  MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +  L   G  ++AVK +     +    D+  F  +   L+     +EA  +L+EM  R+ 
Sbjct: 1407 INGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNF 1466



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 1/216 (0%)

Query: 96   LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
            +D+GF P    +  LI  LCK  K+ EA +++++M   G     +T++ +++ L    ++
Sbjct: 1182 VDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQL 1241

Query: 155  EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E+A  L E + +  +  ++ +YN L+  YC    +       ++M  + L     TY+ L
Sbjct: 1242 EDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTL 1301

Query: 215  VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
            +   C++GRV  A  L   M   GQ +  STY  ++  L + G+  +A+         + 
Sbjct: 1302 IGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEH 1361

Query: 275  KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            K + E+F  L   +    +  EA     E++K  L+
Sbjct: 1362 KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLE 1397



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 2/176 (1%)

Query: 105  AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
             Y++LI  L +     E    +++M + GF   A TF  ++  L +  ++ EA  ++E+M
Sbjct: 1157 TYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELM 1216

Query: 165  KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +     PD+  YN L+   C  G L   + + + + +  +  +  +Y+ L+ G C+  ++
Sbjct: 1217 RHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKI 1276

Query: 225  EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FV-MVCGGRDIKLDT 278
            +EAF     M   G      TY  ++GAL + G    A K FV M   G+ +KL T
Sbjct: 1277 DEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLST 1332



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 86/206 (41%)

Query: 105  AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
             Y  +I  LCK     EAL +   M   G     + +  ++  L R  R++EA    + M
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 1146

Query: 165  KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +   +S D+  YN L+      G     +  L  M +     DA T+  L+ G C+ G+V
Sbjct: 1147 EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 1206

Query: 225  EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
             EA  +L  M   G+     TY  +M  L  +G    A K       R IKL+   +  L
Sbjct: 1207 GEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 1266

Query: 285  GSKLIGLERFNEANFILKEMNKRDLK 310
             +     ++ +EA    +EM  + LK
Sbjct: 1267 INGYCKDQKIDEAFRFFEEMRPKGLK 1292



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 79/177 (44%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P    Y+TLIG LC+  ++  A ++   M   G  L   T+  +L  L +   +EEA  L
Sbjct: 1293 PSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDL 1352

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             + +K+    P++  ++ LL   C  G L        ++ +  L  D   Y+ L+ G C 
Sbjct: 1353 FQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCN 1412

Query: 221  AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             G + EA  LL +M + G      T+  ++  LL+     +A++ +     R+   D
Sbjct: 1413 KGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPD 1469



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 1/207 (0%)

Query: 105  AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
             Y  LI  LCK +K   A+++ + M +G       T+  I+  L +     EA  +   M
Sbjct: 1053 TYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEM 1111

Query: 165  KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                + PD+  Y+ L+   C  G L       K+ME   + AD  TY++L+ G  RAG  
Sbjct: 1112 IGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLW 1171

Query: 225  EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +E    L  MVD G S    T+  ++  L + G   +A + + +   +  + D   + +L
Sbjct: 1172 KEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTL 1231

Query: 285  GSKLIGLERFNEANFILKEMNKRDLKM 311
             + L  + +  +A  + + +  R +K+
Sbjct: 1232 MNGLCLVGQLEDATKLFESLADRGIKL 1258



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 120/301 (39%), Gaps = 18/301 (5%)

Query: 13   IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
            IP +V +    TK G   D  T   Y  L+N     R    +   L+++ +  C     T
Sbjct: 1032 IPDAVQLFDEMTKKGLLGDAKT---YGILINGLCKARK-TGLAIKLHEKMKGNCKGDVFT 1087

Query: 73   FNFITN-------TENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALR 124
            +  I +       T  +L + S++      +  G  P    Y +L+  LC+  ++ EAL 
Sbjct: 1088 YGMIIDALCKDGMTTEALDMFSEM------IGAGILPDVVVYSSLMDGLCRFGRLKEALE 1141

Query: 125  VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
                M   G      T++ ++  L+R    +E    + +M +   SPD   +  L+   C
Sbjct: 1142 FFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLC 1201

Query: 185  FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
             +G +     +L+ M  +    D  TY+ L+ G C  G++E+A  L   + D G  +   
Sbjct: 1202 KEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVF 1261

Query: 245  TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +Y  ++    +     +A +F      + +K  T  + +L   L    R   A  +  EM
Sbjct: 1262 SYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEM 1321

Query: 305  N 305
             
Sbjct: 1322 Q 1322



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 39/206 (18%)

Query: 32   EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
            +P++  Y+ L+ A      + T + L  +      F   +T+  + +       L    D
Sbjct: 1292 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMD 1351

Query: 89   LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            L +++ + +   P    +  L+  +C+  K++EA +  D +++ G               
Sbjct: 1352 LFQSIKKTEHK-PNIEVFSILLDGMCRAGKLEEAWKQFDEISKNG--------------- 1395

Query: 149  TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                                + PD  AYN L+   C KG L+    +L +MEE+    D+
Sbjct: 1396 --------------------LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDS 1435

Query: 209  RTYDALVLGACRAGRVEEAFVLLRRM 234
             T++ ++    +   + EA  LL  M
Sbjct: 1436 ITFNVIIQNLLKENEIHEAIQLLEEM 1461



 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P   AY+ LI  LC    + EA++++  M E G    +ITF+ I+  L +   + EA  L
Sbjct: 1398 PDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQL 1457

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            +E M+    SPD    + LL    F     A
Sbjct: 1458 LEEMRNRNFSPDEAVTSMLLCLASFDPQWHA 1488



 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 21/217 (9%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME----E 156
            P     + LI   C L+ +     V     + GF   A+T    ++ L +G  ME    +
Sbjct: 979  PDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVT----VTTLVKGVWMENGIPD 1034

Query: 157  AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG---ADARTYDA 213
            A  L + M +  +  D   Y  L+   C        +G+  K+ E+  G    D  TY  
Sbjct: 1035 AVQLFDEMTKKGLLGDAKTYGILINGLC----KARKTGLAIKLHEKMKGNCKGDVFTYGM 1090

Query: 214  LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
            ++   C+ G   EA  +   M+  G       Y+ +M  L R G   +A++F     GR 
Sbjct: 1091 IIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 1150

Query: 274  IKLDTELFGSLGSKLIGLER---FNEANFILKEMNKR 307
            I  D   + SL   + GL R   + E  + L  M  R
Sbjct: 1151 ISADVYTYNSL---IHGLSRAGLWKEVTWFLNLMVDR 1184



 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 1/139 (0%)

Query: 171  PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
            PD      L+     +  +     +  +M ++ L  DA+TY  L+ G C+A +   A  L
Sbjct: 1014 PDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKL 1073

Query: 231  LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG 290
              +M  + +  ++ TY  ++ AL + G   +A+       G  I  D  ++ SL   L  
Sbjct: 1074 HEKMKGNCKGDVF-TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCR 1132

Query: 291  LERFNEANFILKEMNKRDL 309
              R  EA    KEM  R +
Sbjct: 1133 FGRLKEALEFFKEMEGRGI 1151


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y TLI   C   ++ EA  +++ M       +  T++ ++  L +  +++E+  
Sbjct: 182 FPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKN 241

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+ VM +  V PD+  Y+ L+  YC  G +     +   M +  +  D  +Y+ ++ G C
Sbjct: 242 LLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLC 301

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +  RV+EA  LLR M+         TY+ ++  L +LG
Sbjct: 302 KGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLG 339



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 77/163 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ +I  LCK K++DEA+ ++  M         +T+  ++  L +  R+     L
Sbjct: 288 PDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDL 347

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M       +L  YN LL   C   NL     +  KM+E  +  +  TY AL+ G C+
Sbjct: 348 TKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCK 407

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR+++   L + ++  G  +   TY  ++  L + G + +A+
Sbjct: 408 GGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEAL 450



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 93/207 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK K +DEA  +   M   G     IT+  ++       ++ EA+GL
Sbjct: 148 PDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGL 207

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    ++P++  YN L+   C +G +  +  +L  M ++ +  D   Y  L+ G C 
Sbjct: 208 LNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCL 267

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G V++A  +   MV  G +    +Y  ++  L +     +A+  +     +++  DT  
Sbjct: 268 VGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVT 327

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL   L  L R      + KEM+ R
Sbjct: 328 YSSLIDGLCKLGRITTILDLTKEMHHR 354



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 1/213 (0%)

Query: 98  KGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF   + +Y  L+  LCK+ +   A++++  + +       + +  I+  L + K ++E
Sbjct: 109 QGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDE 168

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+ L   M    + PD+  Y  L+  +C  G L    G+L +M  + +  +  TY+ L+ 
Sbjct: 169 AYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLID 228

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
             C+ G+V+E+  LL  M   G       Y+ +M     +G   +A +  +V     +  
Sbjct: 229 TLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNP 288

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           D   +  + + L   +R +EA  +L+EM  +++
Sbjct: 289 DVYSYNIIINGLCKGKRVDEAMNLLREMLHKNM 321



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 76/157 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   C + ++ +A ++  +M + G      +++ I++ L +GKR++EA  L
Sbjct: 253 PDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNL 312

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    + PD   Y+ L+   C  G +T    + K+M      A+  TY++L+ G C+
Sbjct: 313 LREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCK 372

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              +++A  L  +M + G      TY  ++  L + G
Sbjct: 373 NQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGG 409



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 71/156 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y +LI  LCKL +I   L +   M   G   + +T++ +L  L + + +++A  
Sbjct: 322 IPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIA 381

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   MKE  + P+   Y  L+   C  G L     + + +  +    D  TY  ++ G C
Sbjct: 382 LFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLC 441

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G  +EA  +  +M D+G      T+  ++ +LL 
Sbjct: 442 KEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLE 477



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 120/293 (40%), Gaps = 27/293 (9%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           M LLR +P    I +   +  S  K   +P   T       + A G   DL T+  L+N 
Sbjct: 1   MLLLRHIPP---IIEFGKILGSLVKMKHYP---TVISLSKQMEAKGIVPDLVTLSILIN- 53

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
                CF       F      S SVL  +      L  G+ P     +TL+  LC   ++
Sbjct: 54  -----CFCHLGQMAF------SFSVLGKI------LKLGYQPNTIILNTLMKGLCLKGEV 96

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            ++L   D +   GF +  +++  +L+ L +      A  L+  +++    PD+  Y+ +
Sbjct: 97  KKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTI 156

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C    +     +  +M    +  D  TY  L+ G C AG++ EAF LL  M+    
Sbjct: 157 IDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNI 216

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL--GSKLIG 290
           +    TY  ++  L + G   ++   + V   + +K D  ++  L  G  L+G
Sbjct: 217 NPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVG 269



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 4/173 (2%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           I F  IL  L + K       L + M+   + PDL   + L+  +C  G +  +  VL K
Sbjct: 11  IEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGK 70

Query: 199 MEEEKLGADARTY--DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           +   KLG    T   + L+ G C  G V+++     ++V  G  +   +Y  ++  L ++
Sbjct: 71  IL--KLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKI 128

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           G    A+K +     R  + D  ++ ++   L   +  +EA  +  EMN R +
Sbjct: 129 GETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGI 181



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 74  NFITNTENSLSVLSDLCR-----TLARLDKGFPRKS------AYDTLIGRLCKLKKIDEA 122
           N I +T    S++  LC+     T+  L K    +        Y++L+  LCK + +D+A
Sbjct: 320 NMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKA 379

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           + +   M E G   +  T+  ++  L +G R+++   L + +       D+  Y  +++ 
Sbjct: 380 IALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISG 439

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            C +G       +  KME+     +A T++ ++         ++A  LL  M+  G
Sbjct: 440 LCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKG 495


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 3/219 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ +I RLCK K++DEA+ ++  +       + +T+  ++    +  R+  A  L
Sbjct: 288 PNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDL 347

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M       D+  Y  LL A C   NL   + +  KM+E  +  +  TY AL+ G C+
Sbjct: 348 LKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCK 407

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR + A  L + ++  G  +   TY  ++  L + G   +A+             D   
Sbjct: 408 GGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVT 467

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYY 319
           F  +   L   ++ ++A  +L EM  +DL    + RD++
Sbjct: 468 FEIIIRSLFEKDQNDKAEKLLHEMIAKDL---LRFRDFH 503



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 97/211 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y TLI   C   ++ EA  +++ M       +  T+  ++  L +  +++EA  
Sbjct: 182 FPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKN 241

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+ VM +  V P++ +YN L+  YC  G +     +   M ++ +  +  +Y+ ++   C
Sbjct: 242 LLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLC 301

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           ++ RV+EA  LLR ++         TY+ ++    +LG    A+  +     R    D  
Sbjct: 302 KSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVV 361

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            + SL   L   +  ++A  +  +M +R ++
Sbjct: 362 TYTSLLDALCKNQNLDKATALFMKMKERGIQ 392



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 132/300 (44%), Gaps = 28/300 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFIT-----------NTE 80
           PT+      +   G E DL T+  L+N     C C     TF+F             NT 
Sbjct: 27  PTAISLFKQMQVKGIEPDLFTLNILIN-----CFCHLGQMTFSFTVLGKILKLGYQPNTI 81

Query: 81  NSLSVLSDLC------RTLARLDK----GFPR-KSAYDTLIGRLCKLKKIDEALRVVDIM 129
              +++  LC      ++L   DK    GF   + +Y TL+  LCK+ +   AL+++ ++
Sbjct: 82  TLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMI 141

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            +     + + ++ I+  L + K + EA+ L   M    + P++  Y+ L+  +C  G L
Sbjct: 142 EDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQL 201

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
               G+L +M  + +  +  TY  L+   C+ G+V+EA  LL  M  +G      +Y  +
Sbjct: 202 MEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTL 261

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           M     +G    A +       + +  +   +  +  +L   +R +EA  +L+E+  +++
Sbjct: 262 MDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNM 321



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 118/273 (43%), Gaps = 17/273 (6%)

Query: 35  SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLA 94
           S ++ D V A G + D  +   LLN   +            I  T ++L +L  +     
Sbjct: 99  SLHFHDKVVAQGFQMDQVSYATLLNGLCK------------IGETRSALKLLRMIEDRST 146

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R     P    Y+T+I  LCK K ++EA  +   M   G   + IT+  ++       ++
Sbjct: 147 R-----PNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQL 201

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+GL+  M    ++P++  Y  L+ A C +G +     +L  M +E +  +  +Y+ L
Sbjct: 202 MEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTL 261

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C  G V+ A  +   MV  G +    +Y  ++  L +     +A+  +     +++
Sbjct: 262 MDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNM 321

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +T  + SL      L R   A  +LKEM  R
Sbjct: 322 VPNTVTYSSLIDGFCKLGRITSALDLLKEMYHR 354



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 80/165 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+   C + ++  A ++   M + G   +  +++ ++  L + KR++EA  L
Sbjct: 253 PNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNL 312

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +    + P+   Y+ L+  +C  G +T+   +LK+M      AD  TY +L+   C+
Sbjct: 313 LREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCK 372

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
              +++A  L  +M + G      TY  ++  L + G +  A K 
Sbjct: 373 NQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKL 417



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 80/171 (46%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           + F+ I+  L + K    A  L + M+   + PDL   N L+  +C  G +T +  VL K
Sbjct: 11  MEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGK 70

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           + +     +  T + L+ G C  G V+++     ++V  G  +   +YA ++  L ++G 
Sbjct: 71  ILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGE 130

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              A+K + +   R  + +  ++ ++   L   +  NEA  +  EM+ R +
Sbjct: 131 TRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ ++G L K+K    A+ +   M   G      T + +++      +M  ++ +
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  + ++   P+    N L+   C KG +  +     K+  +    D  +Y  L+ G C+
Sbjct: 68  LGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCK 127

Query: 221 AGRVEEAFVLLRRMVDDGQS----VLYST 245
            G    A  LL RM++D  +    V+Y+T
Sbjct: 128 IGETRSALKLL-RMIEDRSTRPNVVMYNT 155


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  L++GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMI 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 19/217 (8%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF- 100
           + A+G + D+ T   L+N   ++   + AN             VL D       LDKG  
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDAN-------------VLFD-----EMLDKGLV 238

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +++A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL+ G C+
Sbjct: 299 IDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQ 358

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  ++E  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M+  G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 80/172 (46%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E + L   M+   V PD+  Y+ L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 129/309 (41%), Gaps = 30/309 (9%)

Query: 37  YYDDLV----NAAGHERDLETVRYLLNKRARDC-------CFNTANTFNFITNTENSLSV 85
           Y+ D++    N AG   ++ T   L+N   ++         F          N     S+
Sbjct: 243 YHVDMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSL 302

Query: 86  LSDLCRTLARLDK----------GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           +S LCR     D           G       ++++   CK   + EA   VD MA+ G  
Sbjct: 303 VSGLCREGKVEDSMKLVEEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMK 362

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +T++ ++    R  +M+EA      M    +SPD+  YN L+T +    +  + SG+
Sbjct: 363 PNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGL 422

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L +M+E  + AD  TY+ L+   C  G V +A  LL  MV+ G    + TY  ++     
Sbjct: 423 LDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCE 482

Query: 256 LG--YYAQAVKFVM-VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
            G    A  ++  M  C  R   +   +F     K   + + +EAN +L EM ++ L   
Sbjct: 483 KGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCK---MGKMDEANVVLNEMLEKGL--- 536

Query: 313 FKLRDYYEI 321
              R  YEI
Sbjct: 537 VPNRITYEI 545



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 4/187 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS---VLTRGKRMEEA 157
           P K  ++ +I  LCK  ++ +A  V   M   G   S +T++ ++       R  +M   
Sbjct: 186 PDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHV 245

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L++ M +  +SP++  +N L+  YC + N+TA   V ++M +  + A+  TY +LV G
Sbjct: 246 DMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSG 305

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            CR G+VE++  L+  M + G + L  T   V+    + G   +A  +V     + +K +
Sbjct: 306 LCREGKVEDSMKLVEEMEELGLATL-PTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPN 364

Query: 278 TELFGSL 284
              + +L
Sbjct: 365 VVTYNTL 371



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 77/193 (39%), Gaps = 35/193 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI    +L K+ EA      MA  G      T++ +++  T         GL
Sbjct: 363 PNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGL 422

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC- 219
           ++ MKE  V  DL  YN L+ A C KG +     +L +M E  L    RTY+A++ G C 
Sbjct: 423 LDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCE 482

Query: 220 ----------------------------------RAGRVEEAFVLLRRMVDDGQSVLYST 245
                                             + G+++EA V+L  M++ G      T
Sbjct: 483 KGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRIT 542

Query: 246 YAHVMGALLRLGY 258
           Y  +   ++  GY
Sbjct: 543 YEIINSGMIEKGY 555



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 3/176 (1%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           SA + + +L+ L R  R++ A          RVSPD   +N +++  C  G L     V 
Sbjct: 152 SAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAGDVA 211

Query: 197 KKMEEEKLGADARTYDALVLG---ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           K M    L     TY+ L+ G     RAG++    +LL+ M   G S    T+  ++   
Sbjct: 212 KDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLINGY 271

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +      A+K         I  +   + SL S L    +  ++  +++EM +  L
Sbjct: 272 CKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGL 327


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 18/252 (7%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           Q+V     F  SG    +PT   Y  ++N      +      L  K     C     T+N
Sbjct: 183 QAVEFFDDFEASGC---QPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYN 239

Query: 75  FITNT-------ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVD 127
            + ++         +L + S +     +  +  P    Y++LI  LC  ++  EA  +++
Sbjct: 240 ILIDSLCKDKLVNEALDIFSYM-----KAKRISPDIFTYNSLIQGLCNFRRWKEASALLN 294

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M       +  TF+ ++  + +  ++ EA G+ + M E+ V PD+  Y+ L+  Y  + 
Sbjct: 295 EMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRM 354

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYS 244
            +     +   M  +    DA +Y+ L+ G C+A R++EA  L   M+  G    +V Y+
Sbjct: 355 EIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYN 414

Query: 245 TYAHVMGALLRL 256
           T  H +  L RL
Sbjct: 415 TLIHGLCQLGRL 426



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 85/204 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  +CK  K+ EA  V   M E G     +T+  ++   +    + EA  L
Sbjct: 303 PNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKL 362

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      PD  +YN L+  YC    +     +  +M  + L  D   Y+ L+ G C+
Sbjct: 363 FDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQ 422

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+ EA  L + M  +G      TY+ ++    + GY  +A +   V     +K D  +
Sbjct: 423 LGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAM 482

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L   +       +A  +  E+
Sbjct: 483 YNILIDAMCKFGNLKDARKLFSEL 506



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 2/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK+ +   A  +   M E G   + +T++ ++  L + K + EA  +
Sbjct: 198 PTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDI 257

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK  R+SPD+  YN L+   C        S +L +M    +  +  T++ LV   C+
Sbjct: 258 FSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICK 317

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM-GALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            G+V EA  + + M + G      TY+ +M G  LR+    +A K       +  K D  
Sbjct: 318 EGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRME-IVEARKLFDAMITKGCKPDAF 376

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +  L       +R +EA  +  EM  + L
Sbjct: 377 SYNILIKGYCKAKRIDEAKQLFNEMIHQGL 406



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 12/165 (7%)

Query: 82  SLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           +LS+L D    L R+D  F            P    ++TLI  LCK+ K  +A+   D  
Sbjct: 132 TLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDF 191

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   +  T+  I++ L +      A GL + M+E    P++  YN L+ + C    +
Sbjct: 192 EASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLV 251

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
                +   M+ +++  D  TY++L+ G C   R +EA  LL  M
Sbjct: 252 NEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEM 296



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI   CK K+IDEA ++ + M   G     + ++ ++  L +  R+ EA  L
Sbjct: 373 PDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDL 432

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      PDL  Y+ LL  +C +G L     + + M+   L  D   Y+ L+   C+
Sbjct: 433 FKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCK 492

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            G +++A  L   +   G       Y  ++  L + G   +A++
Sbjct: 493 FGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALE 536



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LC+L ++ EA  +   M   G      T+  +L    +   + +A+ L
Sbjct: 408 PDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRL 467

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             VM+   + PD+  YN L+ A C  GNL     +  ++  + L  + + Y  ++   C+
Sbjct: 468 FRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCK 527

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G ++EA    R M  DG
Sbjct: 528 EGLLDEALEAFRNMEGDG 545



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 69/181 (38%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G      T   ++   +  +R++ A+ +   M ++ + PD   +N L+   C  G 
Sbjct: 121 MELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGK 180

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                      E         TY  ++ G C+ G    A  L ++M + G      TY  
Sbjct: 181 FAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNI 240

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++ +L +     +A+        + I  D   + SL   L    R+ EA+ +L EM   +
Sbjct: 241 LIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLN 300

Query: 309 L 309
           +
Sbjct: 301 I 301



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 1/143 (0%)

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR-GKRMEEAWGLMEVMKEIRVSPDLT 174
            + ID+AL   + M         I F  +LS + + G+       L + M+   +SPD+ 
Sbjct: 72  FRNIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIY 131

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             + L+  +     +     V  KM +  L  DA T++ L+ G C+ G+  +A       
Sbjct: 132 TLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDF 191

Query: 235 VDDGQSVLYSTYAHVMGALLRLG 257
              G      TY  ++  L ++G
Sbjct: 192 EASGCQPTVYTYTTIINGLCKIG 214


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 12/184 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  +D+GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 173 LGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVT 232

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 233 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 292

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L +   Y 
Sbjct: 293 MKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYL 352

Query: 261 QAVK 264
            A K
Sbjct: 353 DAEK 356



 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 48/100 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI   CK   ++ A      M +    L  + +  ++S L + +R  +A  +
Sbjct: 298 PDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKV 357

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  M  + + PD   Y  ++  +C KG++   S +LK+M+
Sbjct: 358 LREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 397



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 52/125 (41%)

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           E  F +   T   +L  L + K  +  WG  E + E      L  +N L+  +C +G++ 
Sbjct: 83  EHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIM 142

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               V   + +  L     +++ L+ G  R G ++E F L   M   G      TY+ ++
Sbjct: 143 VAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLI 202

Query: 251 GALLR 255
             L +
Sbjct: 203 NGLCK 207



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 29/149 (19%), Positives = 60/149 (40%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 77  CYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 136

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  +   + +  + P + ++N L+  Y   G++     +   M    +  D  
Sbjct: 137 KEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVY 196

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G C+  ++++A  +   M+D G
Sbjct: 197 TYSVLINGLCKESKMDDANEMFDEMLDKG 225


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  L++GF  K+A            Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMI 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 19/217 (8%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF- 100
           + A+G + D+ T   L+N   ++   + AN             VL D       LDKG  
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDAN-------------VLFD-----EMLDKGLV 238

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +++A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL+ G C+
Sbjct: 299 IDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQ 358

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  ++E  R+ + M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M+  G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 80/172 (46%), Gaps = 1/172 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E + L   M+   V PD+  Y+ L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + ++M+    S    TY  ++  L + G   QA   +
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 95/200 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           A++TL+  LC+  ++ EA  +VD M E G   + +T+  I++ + +    + A  L+  M
Sbjct: 12  AFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRKM 71

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E  +  D+  Y  ++   C  G+ +    +  +M ++ +  +  TY+ ++ G C  G+ 
Sbjct: 72  DESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKW 131

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A  LLR M++        T+  ++ A ++ G  ++A +      GR+I  DT  + SL
Sbjct: 132 TDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSL 191

Query: 285 GSKLIGLERFNEANFILKEM 304
                   R ++A  I   M
Sbjct: 192 IDGFCKHSRLDDAKHIFDLM 211



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 62/135 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y T++  +CK+   D AL ++  M E       + +  I+  L +     +A  L
Sbjct: 43  PNEVTYGTIVNGMCKMGDTDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNL 102

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P++  YN ++   C  G  T    +L+ M E  +  D  T++AL+    +
Sbjct: 103 FTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVK 162

Query: 221 AGRVEEAFVLLRRMV 235
            G++ EA  L R M+
Sbjct: 163 EGKISEAEELYREML 177



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 87/199 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I RLCK     +A  +   M + G   + +T++ ++       +  +A  L+  M 
Sbjct: 83  YTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMI 142

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  V PD+  +N L+ A+  +G ++    + ++M    +  D  TY++L+ G C+  R++
Sbjct: 143 ESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLD 202

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  +   MV  G S    T   ++G   R       +K +     R +  D+  + +L 
Sbjct: 203 DAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLI 262

Query: 286 SKLIGLERFNEANFILKEM 304
                    N A  + +EM
Sbjct: 263 HGFCQAGDLNAAQDLFQEM 281



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M E G     + F+ +++ L R  R+ EA  L++ M E    P+   Y  ++   C  G+
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
             +   +L+KM+E  + AD   Y A++   C+ G   +A  L   M D G      TY  
Sbjct: 61  TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNC 120

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++      G +  A + +      ++  D   F +L +  +   + +EA  + +EM  R+
Sbjct: 121 MIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRN 180

Query: 309 L 309
           +
Sbjct: 181 I 181



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 36/182 (19%)

Query: 97  DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKG FP    Y+ +I   C   K  +A +++  M E       +TF+ +++   +  ++ 
Sbjct: 108 DKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKIS 167

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG---------NLTATSG------------ 194
           EA  L   M    + PD   YN L+  +C            +L  + G            
Sbjct: 168 EAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLI 227

Query: 195 --------------VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
                         +L +M    L  D+ +Y+ L+ G C+AG +  A  L + M+   + 
Sbjct: 228 GGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMISQVRW 287

Query: 241 VL 242
           +L
Sbjct: 288 IL 289


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 11/218 (5%)

Query: 25  KSGAFPDEPTSAYYDD---LVNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFITNTE 80
           K G  P+  T +   D   LVN   + + + +   L    A    +N   N F  I  T+
Sbjct: 163 KQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNIMINGFCKIKMTD 222

Query: 81  NSLSVLSDL-CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
            ++++  ++ CR L       P    Y++LI  LCK  KI  AL++VD M + G     I
Sbjct: 223 EAMNLFEEMHCRKL------IPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPDII 276

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +L  L +  ++++A  L++ +K+  + P++  Y  L+   C  G L     + + +
Sbjct: 277 TYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDL 336

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
             +       TY  ++ G C  G  +EA  LL +M D+
Sbjct: 337 LVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDN 374



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 74/157 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+   C + +++ A  +   M+  G   +  +++ +++   + K  +EA  L
Sbjct: 168 PNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNIMINGFCKIKMTDEAMNL 227

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M   ++ PD+  YN L+   C  G ++    ++ +M +     D  TY +L+   C+
Sbjct: 228 FEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCK 287

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
             +V++A  LL+ + D G      TY  ++  L + G
Sbjct: 288 NHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGG 324



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 86/187 (45%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
            + EA  V+ +M + G   +A+T+  ++        +  A G+   M    V+ ++ +YN
Sbjct: 150 NVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYN 209

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++  +C          + ++M   KL  D  TY++L+ G C++G++  A  L+  M D 
Sbjct: 210 IMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDR 269

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           GQ     TY+ ++ AL +     +A+  +     + I+ +   +  L   L    R  +A
Sbjct: 270 GQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDA 329

Query: 298 NFILKEM 304
           + I +++
Sbjct: 330 HNIFEDL 336



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 97  DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G P     Y +L+  LCK  ++D+A+ ++  + + G   +  T+  ++  L +G R+E
Sbjct: 268 DRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLE 327

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  + E +     +  +  Y  ++  +C KG       +L KM++     +A TY+ ++
Sbjct: 328 DAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIII 387

Query: 216 LGACRAGRVEEAFVLLRRMVDDG 238
                    ++A  LLR M+  G
Sbjct: 388 RSLFDNDENDKAENLLREMITRG 410


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 35/219 (15%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  +I  LCK+   +EA+ + + M + G   + +TF  ++ +L +  ++ +A  L
Sbjct: 235 PNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKL 294

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E+M +I + P+L  Y  L+  +C  G+L +   +   M  +    D  +Y+ L+ G C+
Sbjct: 295 LEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCK 354

Query: 221 AGRVEEAFVLLRRM------------------------VDDGQSVLYSTYAHVMG----- 251
             +VEEA  L   M                        VDD + +      + M      
Sbjct: 355 TLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCI 414

Query: 252 ------ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
                  L + GY  +A+K        ++KLD E FG L
Sbjct: 415 CCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCL 453



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LCK   I EA+++ + +      L   TF  ++  L +  ++E AW L E + E  + PD
Sbjct: 422 LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 481

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
             AY+ ++  +C KG +   + + +KMEE     D  TY  L+ G   + ++E+   LL 
Sbjct: 482 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 541

Query: 233 RMV------DDG 238
           RM+      DDG
Sbjct: 542 RMIEKDVWPDDG 553



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KG+ P   +Y+ LI   CK  K++EA+++ + M   G      T   +L  L    ++++
Sbjct: 336 KGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDD 395

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L  V+K   +  DL      L   C  G +     +  ++E   +  D  T+  L+ 
Sbjct: 396 AKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLID 455

Query: 217 GACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           G C+AG++E A+ L  ++ ++G    ++ YS+  H
Sbjct: 456 GLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIH 490



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 14/177 (7%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P     + LI  LC + +I+E L  +  +   G+    +TF  ++  L    R+ EA  
Sbjct: 123 WPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATK 182

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG----------ADAR 209
           L   M+++  +P++  Y  L+   C  GN+     +  K  +E L            +  
Sbjct: 183 LFMRMQKLGCTPNVVTYGTLIKGLCALGNIN----IALKWHQEMLNDTSPYVFNCRPNVI 238

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +Y  ++ G C+ G  EEA  L   MVD G      T++ ++  L + G   +A K +
Sbjct: 239 SYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLL 295



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/165 (16%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +++ L+  L K++   +   +   M   G     +T + +++ L    R+ E    M  +
Sbjct: 93  SFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGI 152

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 PD+  +  L+   C +  +   + +  +M++     +  TY  L+ G C  G +
Sbjct: 153 MRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNI 212

Query: 225 EEAFVLLRRMVDDGQSVLYS------TYAHVMGALLRLGYYAQAV 263
             A    + M++D    +++      +Y+ ++  L ++G + +A+
Sbjct: 213 NIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAI 257



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +  LI  LCK  K++ A  + + + E G    A+ +  ++    +  ++++A  L + M
Sbjct: 449 TFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKM 508

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +E   SPDL  Y+ L+  +     L     +L +M E+ +  D   Y  +    C+  + 
Sbjct: 509 EENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKY 568

Query: 225 EEAFVLLRR 233
           +E   LL+R
Sbjct: 569 KEWLDLLQR 577



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/227 (18%), Positives = 88/227 (38%), Gaps = 5/227 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   C +  ++ A  +   M   G+    I+++ +++   +  ++EEA  L
Sbjct: 305 PNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKL 364

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M  + + PD+     LL A    G +     + + ++   +  D       + G C+
Sbjct: 365 FNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCK 424

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + EA  L   +      +   T+  ++  L + G    A +         I+ D   
Sbjct: 425 NGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMA 484

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD-----LKMGFKLRDYYEIN 322
           + S+        + ++AN + ++M +       +     +R +YE N
Sbjct: 485 YSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESN 531


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 130/286 (45%), Gaps = 13/286 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK------RARDCCFNTA-NTFNFITNTENSLS 84
           EP +  Y  L++     +D +    ++N+       A +  +NT  N    +  T  +  
Sbjct: 516 EPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKE 575

Query: 85  VLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           +L +L +     +K +    ++Y+++I    K+   D A+     M+E G   + +TF  
Sbjct: 576 MLQNLIK-----EKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTS 630

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +++   +  RM+ A  +   MK + +  DL AY  L+  +C K ++     +  ++ E  
Sbjct: 631 LINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELG 690

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           L  +   Y++L+ G    G+++ A  L ++MV+DG S    TY  ++  LL+ G    A 
Sbjct: 691 LMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLAS 750

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
                     I  D  L   L + L    +F +A+ +L+EM K+D+
Sbjct: 751 DLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDV 796



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 80/185 (43%), Gaps = 1/185 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++   C++K +D A  +   M E G   +  T+  ++    + K  + AW +
Sbjct: 482 PNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDV 541

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGAC 219
           +  M       +   YN ++   C  G  +    +L+ + +E++      +Y++++ G  
Sbjct: 542 INQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFV 601

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G  + A    R M ++G+S    T+  ++    +      A++        ++KLD  
Sbjct: 602 KVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLP 661

Query: 280 LFGSL 284
            +G+L
Sbjct: 662 AYGAL 666



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 62/138 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y++LI     L K+D A+ +   M   G      T+  ++  L +   +  A  L
Sbjct: 693 PNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDL 752

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              + ++ + PD   +  L+     KG     S +L++M+++ +  +   Y  ++ G  R
Sbjct: 753 YSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHR 812

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G + EAF L   M++ G
Sbjct: 813 EGNLNEAFRLHDEMLEKG 830



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 2/142 (1%)

Query: 88  DLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           DL R + R   G P  +  Y ++I    K   ++EA+RV+D M   G  +S I    +++
Sbjct: 295 DLLREM-RGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVN 353

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
              +G  + +A  L   M+E  ++PD   ++ ++  +C    +        +M+  ++  
Sbjct: 354 GYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAP 413

Query: 207 DARTYDALVLGACRAGRVEEAF 228
            +     ++ G  +A   E A 
Sbjct: 414 SSVLVHTMIQGCLKAESPEAAL 435



 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 114 CKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           CK   +  AL ++ ++  + G   S  T+  ++    +   MEEA  +M+ M    +   
Sbjct: 285 CKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMS 344

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           + A   L+  YC    L     +  +MEEE L  D   +  +V   C+   +E+A     
Sbjct: 345 VIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYM 404

Query: 233 RM 234
           RM
Sbjct: 405 RM 406



 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 31/165 (18%), Positives = 74/165 (44%), Gaps = 7/165 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P      T+I    K +  + AL + +   E          + I  +  +  +++ A   
Sbjct: 413 PSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIA-HGFMCNKIFLLFCKQGKVDAATSF 471

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M++  + P++  YN ++ A+C   N+     +  +M E+ L  +  TY  L+ G  +
Sbjct: 472 LKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFK 531

Query: 221 AGRVEEAFVLLRRMVD---DGQSVLYSTYAHVMGALLRLGYYAQA 262
               + A+ ++ +M     +   V+Y+T   ++  L ++G  ++A
Sbjct: 532 NKDEQNAWDVINQMNASNFEANEVIYNT---IINGLCKVGQTSKA 573



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 5/152 (3%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P     + ++  L +   IDEA  + + M   G     +T   ++    R ++ EEA
Sbjct: 199 KVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEA 258

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG--ADARTYDALV 215
             +   +      PD   ++  + A C   +L     +L++M   KLG  A   TY +++
Sbjct: 259 VKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREM-RGKLGVPASQETYTSVI 317

Query: 216 LGACRAGRVEEAFVLLRRMVDDG--QSVLYST 245
           +   + G +EEA  ++  MV  G   SV+ +T
Sbjct: 318 VAFVKEGNMEEAVRVMDEMVGFGIPMSVIAAT 349



 Score = 37.4 bits (85), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%)

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +VD     GF L+   F+ +L+   R KRM+ A     +M + +V P +   N +L++  
Sbjct: 156 LVDSSKRFGFELTPRAFNYLLNAYIRNKRMDYAVDCFGLMVDRKVVPFVPYVNNVLSSLV 215

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
               +     +  KM    +  D  T   L+  + R  + EEA  + RR++  G
Sbjct: 216 RSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRG 269


>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 117/266 (43%), Gaps = 4/266 (1%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V   F KS  F   P    Y+ ++++    +  + + ++  +   D       T+N +  
Sbjct: 283 VVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMF 342

Query: 79  TENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
               L     L R L  + K GF P    Y+ L+  L    K   AL +++ M E G   
Sbjct: 343 ANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEP 402

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             I F  ++  L+R  ++E     M+   ++  +PD+  Y  ++T Y   G L     + 
Sbjct: 403 GVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMF 462

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           K+M E+    +  TY++++ G C AG+ +EA  LL+ M   G +  +  Y+ ++  L   
Sbjct: 463 KEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNA 522

Query: 257 GYYAQAVKFV--MVCGGRDIKLDTEL 280
           G   +A + V  MV  G  + L ++L
Sbjct: 523 GKVLEAHEVVKDMVEKGHYVHLISKL 548



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 4/260 (1%)

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF---PRKSAYDTLIGRL 113
           L+++  +D    TA TFN +  T     +  D+     +  K F   P K +Y+ ++  L
Sbjct: 251 LIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIK-SKTFNYRPYKHSYNAILHSL 309

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
             +K+      V + M E GF    +T++ ++    R  + +  + L++ M +   SPDL
Sbjct: 310 LGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDL 369

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
             YN LL          A   +L  M E  +      +  L+ G  RAG++E     +  
Sbjct: 370 YTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDE 429

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
            V  G +     Y  ++   +  G   +A +       +    +   + S+        +
Sbjct: 430 TVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGK 489

Query: 294 FNEANFILKEMNKRDLKMGF 313
           F EA  +LKEM  R     F
Sbjct: 490 FKEACALLKEMESRGCNPNF 509


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 116/277 (41%), Gaps = 12/277 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT-------ENSLSV 85
           PT   Y  LV+  G    L+    LL +  +  C  +  T++ +  +       E SLS+
Sbjct: 561 PTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSL 620

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
             ++ R     D      S Y  +I  LCK   +D+AL V   M E G       +  +L
Sbjct: 621 FDEMVRKGCVADV-----STYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLL 675

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           S L + ++++ A  +   ++E  + PD   YN ++        +     ++  M+ + + 
Sbjct: 676 SSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNIL 735

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            D  TY +L+ G  ++GR+EEAF +  +M ++G       Y  +M  L + G  + A+  
Sbjct: 736 PDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALII 795

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
                 +    D   + SL   L    R  EA +  +
Sbjct: 796 FRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFE 832



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++  L K  ++DEA ++VD M          T+  +L  L +  R+EEA+ +
Sbjct: 701 PDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNM 760

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E    PD+ AY  L+      G L+    + + M +++   D  TY +L+    +
Sbjct: 761 FTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGK 820

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRVEEA+      +  G +     Y+ ++ +  + G   +A++       R    +   
Sbjct: 821 EGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVT 880

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + +L S L    R N A  +L+EM K
Sbjct: 881 YNNLLSGLAKAGRLNVAEKLLEEMEK 906



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 5/187 (2%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVD 127
           A TF    ++ N    L      +  + K    P    +  LI  L K   IDEA +  +
Sbjct: 287 AQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFN 346

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M       + +T+  +++ L +  R+EEA  +   MKE   SPD  AYN L+      G
Sbjct: 347 GMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAG 406

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYS 244
                 G+ K+M++  L  + RTY+ ++    +AGR  EA+ L   + + G       Y+
Sbjct: 407 EADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYN 466

Query: 245 TYAHVMG 251
           T   V+G
Sbjct: 467 TLIDVLG 473



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 124/318 (38%), Gaps = 33/318 (10%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F K G F  +P +  +   V++      L+     + +  +       +TF  + +    
Sbjct: 275 FGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVK 334

Query: 83  LSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
              + + C+    +   +  P    Y TL+  L K  +++EA  V   M E      AI 
Sbjct: 335 SGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIA 394

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++  L +    + A GL + MK+  + P+L  YN +++     G       +   ++
Sbjct: 395 YNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLK 454

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS---------------- 244
           E+    D  TY+ L+    + G++++   +++ MV+ G   + S                
Sbjct: 455 EQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADR 514

Query: 245 ---------------TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
                          TY  +M A +  G+  +AVK + V    +       + +L   L 
Sbjct: 515 TVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLG 574

Query: 290 GLERFNEANFILKEMNKR 307
              R +EA  +L+EM K+
Sbjct: 575 KAGRLDEAVSLLREMEKQ 592



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 38/262 (14%)

Query: 2    SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
            SL+  L     +  ++++ R+  K    PD  T   Y  L+++ G E  +E   Y     
Sbjct: 778  SLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVT---YSSLIDSLGKEGRVEEAYYFF--- 831

Query: 62   ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKID 120
                              ENS+S             KG  P    Y +LI    K   +D
Sbjct: 832  ------------------ENSIS-------------KGCTPNVGVYSSLIDSFGKKGMVD 860

Query: 121  EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
             AL + + M       + +T++ +LS L +  R+  A  L+E M+++   PDL  YN L+
Sbjct: 861  RALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILI 920

Query: 181  TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
                  G +       K+M+E+ +  D  T+ +L+    +  ++ EA  L   M ++G +
Sbjct: 921  DGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYN 980

Query: 241  VLYSTYAHVMGALLRLGYYAQA 262
                TY  ++  L R G   +A
Sbjct: 981  PSVVTYNVLIDILGRAGKVHEA 1002



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/301 (18%), Positives = 133/301 (44%), Gaps = 15/301 (4%)

Query: 14  PQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK---RARDCCFNTA 70
           P++  +     + GA PD  T   Y+ L++  G    ++ V  ++ +   +  +C  +  
Sbjct: 444 PEAWQLFHDLKEQGAVPDVFT---YNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRD 500

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPR--KSAYDTLIGRLCKLKKIDEALRVVDI 128
           +        E +        RT+     GF    +  Y+TL+        +DEA++++++
Sbjct: 501 SNAGHEGTIEGA-------DRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEV 553

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M +     + +T+  ++  L +  R++EA  L+  M++    P +  Y+ L+ ++  +  
Sbjct: 554 MKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQ 613

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
              +  +  +M  +   AD  TY  ++   C++  V++A  +  RM ++G   L   Y  
Sbjct: 614 EEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKT 673

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++ +L++      A++         +  DT ++  + + L+   R +EA  ++  M  ++
Sbjct: 674 LLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQN 733

Query: 309 L 309
           +
Sbjct: 734 I 734



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 92/207 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY +L+  L K  K+  AL +   MA+       +T+  ++  L +  R+EEA+  
Sbjct: 771 PDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYF 830

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E       +P++  Y+ L+ ++  KG +     + ++M+  +   +  TY+ L+ G  +
Sbjct: 831 FENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAK 890

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGR+  A  LL  M   G      TY  ++  + ++G   +A  +      + I  D   
Sbjct: 891 AGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVIT 950

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           F SL   L  +++  EA  +   M + 
Sbjct: 951 FTSLIESLGKVDKLLEACELFDSMEEE 977



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 70/160 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I RL   ++ D  ++++  M + G  +S      +L        +  A  +   MK
Sbjct: 185 YTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMK 244

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               +P    YN++L      G   +   V  K+ + ++  DA+T+   V    R+GR++
Sbjct: 245 SFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLD 304

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            A   ++ M+  G      T+  ++ AL++ G   +A KF
Sbjct: 305 PAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKF 344



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 2/142 (1%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
            P    Y++L++       L     LL +  +  C     T+N + +    + ++ +    
Sbjct: 876  PNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESY 935

Query: 93   LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              R+ +KG  P    + +LI  L K+ K+ EA  + D M E G+  S +T++ ++ +L R
Sbjct: 936  FKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGR 995

Query: 151  GKRMEEAWGLMEVMKEIRVSPD 172
              ++ EA  +   MK     PD
Sbjct: 996  AGKVHEAAMIFHEMKVKGCMPD 1017



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 2/170 (1%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
            P    Y  L+++ G +  ++    L  +  R  C     T+N + +       L+   + 
Sbjct: 841  PNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKL 900

Query: 93   LARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
            L  ++K    P    Y+ LI  + K+  +DEA      M E G     ITF  ++  L +
Sbjct: 901  LEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGK 960

Query: 151  GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
              ++ EA  L + M+E   +P +  YN L+      G +   + +  +M+
Sbjct: 961  VDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMK 1010



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 111/271 (40%), Gaps = 14/271 (5%)

Query: 45  AGHERDLE----TVRY--LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK 98
           AGHE  +E    TV Y  L  K   +  +NT  +  FI N       + +  + L  + K
Sbjct: 503 AGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMS-AFIHNGH-----VDEAVKLLEVMKK 556

Query: 99  G--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
               P    Y TL+  L K  ++DEA+ ++  M + G   S +T+  +++   +  + EE
Sbjct: 557 HECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEE 616

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           +  L + M       D++ Y+ ++   C   ++     V  +M+EE +      Y  L+ 
Sbjct: 617 SLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLS 676

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
              +  +++ A  +   + +         Y  ++  L++     +A K V     ++I  
Sbjct: 677 SLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILP 736

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           D   + SL   L    R  EA  +  +M + 
Sbjct: 737 DLFTYTSLLDGLGKSGRLEEAFNMFTKMTEE 767


>gi|255584218|ref|XP_002532847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527384|gb|EEF29525.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 21/179 (11%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGF-------------------GLSA--ITFHP 143
            Y+TLI  LC+  +I EA ++VD M   G+                   G+S   +T+  
Sbjct: 294 TYNTLISGLCRKTRIWEAEKLVDQMKRAGYSNGGNWVDVTDLVREMEERGISPSKVTYTI 353

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           + +   R   ME+A+     M+++ + PD+  Y  LL   C KGN+   S + + M E K
Sbjct: 354 LTNAHVRLGDMEKAFHFYSSMEKVGLVPDVHIYGVLLHGLCVKGNMKEASKLFRSMAEMK 413

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           L  +   Y+ ++ G C+AG    A   L+ M D       ++Y+  +G L + G + +A
Sbjct: 414 LEPNEVVYNTMINGYCKAGNSFRALRFLKEMEDKRLVPNVASYSSTIGILCKDGKWQEA 472



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           ++DL R +   ++G  P K  Y  L     +L  +++A      M + G       +  +
Sbjct: 332 VTDLVREME--ERGISPSKVTYTILTNAHVRLGDMEKAFHFYSSMEKVGLVPDVHIYGVL 389

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L  L     M+EA  L   M E+++ P+   YN ++  YC  GN       LK+ME+++L
Sbjct: 390 LHGLCVKGNMKEASKLFRSMAEMKLEPNEVVYNTMINGYCKAGNSFRALRFLKEMEDKRL 449

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             +  +Y + +   C+ G+ +EA +LL +M   G     S Y
Sbjct: 450 VPNVASYSSTIGILCKDGKWQEAEILLNKMRGSGLEPSVSIY 491



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 21/231 (9%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK   +  A  + + M E     +  T+  +++   +    ++ + L
Sbjct: 185 PNVVIYTTLIDGCCKNGDVRRAKLLFNKMGEVNLVANQYTYTVLINGFFKKGLRKDGFEL 244

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M+   V P+L  YN ++  +C +G L     +  +M +  + ++  TY+ L+ G CR
Sbjct: 245 FEKMQLDGVFPNLYTYNCMINEFCNEGKLHKAYELFDEMCKRGVVSNVVTYNTLISGLCR 304

Query: 221 AGRVEEA-----------------FV----LLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             R+ EA                 +V    L+R M + G S    TY  +  A +RLG  
Sbjct: 305 KTRIWEAEKLVDQMKRAGYSNGGNWVDVTDLVREMEERGISPSKVTYTILTNAHVRLGDM 364

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +A  F        +  D  ++G L   L       EA+ + + M +  L+
Sbjct: 365 EKAFHFYSSMEKVGLVPDVHIYGVLLHGLCVKGNMKEASKLFRSMAEMKLE 415



 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 101 PRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           P+ S+  Y+++I    +   I+ A+   + M + G       F+ +L  L + K  E+ W
Sbjct: 79  PKISSLLYESIISVYIQSGSIELAVLYFNQMVDKGLVFEPNIFNTLLDSLVKSKCFEKLW 138

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            +   +K  ++  D+  Y  ++   C  G       +L  +E+  L  +   Y  L+ G 
Sbjct: 139 FVFNEVKG-KIELDVYTYGIMIKGCCEAGVFYKGFELLTDLEKMGLSPNVVIYTTLIDGC 197

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           C+ G V  A +L  +M +        TY  ++    + G
Sbjct: 198 CKNGDVRRAKLLFNKMGEVNLVANQYTYTVLINGFFKKG 236


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L K F P    Y TLI  LCKLKK    L + D M +         ++ ++++ +R   +
Sbjct: 579 LKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHL 638

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E A GL   + E    PD+  +N ++  YC    L     +  KM  E+L  +A T+  L
Sbjct: 639 EAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTIL 698

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAH 248
           +   CR GR+++A ++  +M+++G     V YS   H
Sbjct: 699 IDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIH 735



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 6/185 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           +N + V  D    + R+    P    + TLI   CK   +D+A  + D+MA  G     I
Sbjct: 285 QNDIGVADDYFNMVVRIGPK-PNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLI 343

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
            +  ++  L +  R+E+   L+ V  +  +  D+  ++  + AY   G+L     + K+M
Sbjct: 344 VYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRM 403

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL-----L 254
             E +  +  +   L+ G C+ GR+ EA  L  +++  G      TY+ ++        L
Sbjct: 404 LNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNL 463

Query: 255 RLGYY 259
           R G+Y
Sbjct: 464 RDGFY 468



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 15/226 (6%)

Query: 93  LARLDKGFPR-----KSAYDTLIGRLCKLKKIDEALRVVDI---MAEGGFGLSAITFHPI 144
           L  LDKG         SA D  +       KI +  RV+ I   M   G   + ++   +
Sbjct: 366 LVALDKGIKLDVVGFSSAMDAYV-------KIGDLGRVIQIYKRMLNEGISPNVVSCSIL 418

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +  R+ EA GL   + ++   P +  Y+ L+  +C  GNL     + + M +++ 
Sbjct: 419 IKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRC 478

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D   Y  L+ G C+ G V +A     + V+ G S    T   ++ +  RL     A+K
Sbjct: 479 EPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMK 538

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              + G  +IK DT  +  L        R +EA  +  +M K+D K
Sbjct: 539 VYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFK 584



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++ R     +++  LR    + +GGFGL  IT + IL  +     +  A     +
Sbjct: 238 SVYEFVMNRFMNKGEVEMGLRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYFNM 297

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +  I   P++  ++ L+ AYC +GNL     +   M    +  D   Y  L+ G  +AGR
Sbjct: 298 VVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGR 357

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +E+   LL   +D G  +    ++  M A +++G   + ++
Sbjct: 358 LEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQ 398



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 3/206 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P  A Y+ L+N    E  LE    L              TFN +     +   L D  + 
Sbjct: 620 PDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQL 679

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
            A++  ++  P    +  LI   C+  ++D+A+ +   M E G   + +T+  ++    +
Sbjct: 680 FAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFK 739

Query: 151 GKRM-EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
            + M E    L   M E  ++P++ +Y+ L+   C +G +   S   +   ++ L  D  
Sbjct: 740 SQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVI 799

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMV 235
            Y  L+ G C+ GR+ EA +L   M+
Sbjct: 800 AYTILIRGYCKVGRLTEAMMLYDNML 825



 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 77/210 (36%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LCK   + +ALR        G   +  T + +L    R K +  A  +
Sbjct: 480 PDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKV 539

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M  + +  D   Y  L+      G +     +  +M ++    D  TY  L+ G C+
Sbjct: 540 YYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCK 599

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +      +   M  +  +   + Y  ++    R G+   A+   +    R  K D   
Sbjct: 600 LKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFT 659

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F ++       +R ++A  +  +M    L+
Sbjct: 660 FNTMICCYCNFKRLDDAVQLFAKMTSEQLR 689


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 76/153 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+TLI   CK K++++ +++   M++ G   + +T++ ++    +   +++A      M
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               +SPD+  YN LL   C  G L     + + M++ ++  D  TY  ++ G C+ G+V
Sbjct: 392 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           EEA+ L   +   G      TY  +M  L   G
Sbjct: 452 EEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 13/240 (5%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           +++  LC+T  R++  F            P    Y  L+  LC   +  +A R++  M +
Sbjct: 195 AIIDSLCKT-KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
                + IT+  +L    +  ++ EA  L E M  + + PD+  Y+ L+   C    +  
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDE 313

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
            + +   M  +   AD  +Y+ L+ G C+A RVE+   L R M   G      TY  ++ 
Sbjct: 314 ANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 373

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
              + G   +A +F        I  D   +  L   L       +A  I ++M KR++ +
Sbjct: 374 GFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 90/194 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++ +I   C   ++  AL ++  M + G+    +T   +++   R  R+ +A  L++ M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            EI   PD+ AYN ++ + C    +       K++E + +  +  TY ALV G C + R 
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A  LL  M+    +    TY+ ++ A ++ G   +A +         I  D   + SL
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301

Query: 285 GSKLIGLERFNEAN 298
            + L   +R +EAN
Sbjct: 302 INGLCLHDRIDEAN 315



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 108/244 (44%), Gaps = 2/244 (0%)

Query: 68  NTANTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRV 125
           N   TFN + N       +S     L ++ K G+ P +    +L+   C+  ++ +A+ +
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           VD M E G+    + ++ I+  L + KR+ +A+   + ++   + P++  Y  L+   C 
Sbjct: 178 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 237

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
               +  + +L  M ++K+  +  TY AL+    + G+V EA  L   MV         T
Sbjct: 238 SSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 297

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y+ ++  L       +A +   +   +    D   + +L +     +R  +   + +EM+
Sbjct: 298 YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 357

Query: 306 KRDL 309
           +R L
Sbjct: 358 QRGL 361



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 90/192 (46%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+++A+ +   M +     S + F+ +LS + + K+ +    L + M+ + +  DL  +N
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++  +C    ++    +L KM +     D  T  +LV G CR  RV +A  L+ +MV+ 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G       Y  ++ +L +      A  F      + I+ +   + +L + L    R+++A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 298 NFILKEMNKRDL 309
             +L +M K+ +
Sbjct: 245 ARLLSDMIKKKI 256



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 104/241 (43%), Gaps = 2/241 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+  + N   + S  SD  R L+ +   K  P    Y  L+    K  K+ EA  + + M
Sbjct: 227 TYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 286

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
                    +T+  +++ L    R++EA  + ++M       D+ +YN L+  +C    +
Sbjct: 287 VRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRV 346

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                + ++M +  L ++  TY+ L+ G  +AG V++A     +M   G S    TY  +
Sbjct: 347 EDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNIL 406

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +G L   G   +A+        R++ LD   + ++   +    +  EA  +   ++ + L
Sbjct: 407 LGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL 466

Query: 310 K 310
           K
Sbjct: 467 K 467



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 5/224 (2%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +++ + SD+ ++     + FP    ++ L+  + KLKK D  + +   M   G      T
Sbjct: 68  DAIDLFSDMVKS-----RPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYT 122

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ +++      ++  A  ++  M ++   PD      L+  +C +  ++    ++ KM 
Sbjct: 123 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E     D   Y+A++   C+  RV +AF   + +   G      TY  ++  L     ++
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            A + +     + I  +   + +L    +   +  EA  + +EM
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 286


>gi|413951888|gb|AFW84537.1| hypothetical protein ZEAMMB73_783984 [Zea mays]
          Length = 238

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 22/238 (9%)

Query: 32  EPTSAYYDDLVNAAGHERDL-ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90
           +P S  Y+ L+N       + + V+  +      CC  T  T+N         +++  LC
Sbjct: 7   KPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCC-PTIITYN---------TLIDGLC 56

Query: 91  R----------TLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           +          T   L++GF P    Y +LI  LC++KKID AL + + + + G  +  I
Sbjct: 57  KAEKYQEASSLTKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVI 116

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
             + ++  L    ++ +A+ +   MKE   SP+L  YN L+  +   G++   + +   +
Sbjct: 117 VHNILIHGLCSAGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAI 176

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            +  L  D  TY+  + G C   R  E  +LL  ++  G      T++ ++ A++R G
Sbjct: 177 LDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPSVITWSILVRAVIRYG 234



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 85/204 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C+  KI +A+++   M   G   + IT++ ++  L + ++ +EA  L
Sbjct: 8   PNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEKYQEASSL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E    PD+  Y  L+   C    + A   +  ++ +  +  D   ++ L+ G C 
Sbjct: 68  TKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHNILIHGLCS 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG+V +AF +   M +   S    TY  +M     +G    A           +K D   
Sbjct: 128 AGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAILDNGLKPDIVT 187

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +    L    R  E   +L E+
Sbjct: 188 YNTRIKGLCSCNRTPEGVLLLNEV 211



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 50/113 (44%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M + G   ++  ++ +++   R  ++ +A  +   M      P +  YN L+   C    
Sbjct: 1   MMKDGCKPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEK 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
               S + K+M E     D RTY +L+ G CR  +++ A  +   ++D G  V
Sbjct: 61  YQEASSLTKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQV 113


>gi|302761606|ref|XP_002964225.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
 gi|300167954|gb|EFJ34558.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
          Length = 580

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 27/232 (11%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI  LCK  +IDEALR+ ++M          T++ ++  +++   +E+A  +++ M+
Sbjct: 176 YNCLIEGLCKGDRIDEALRLYELMRGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTME 235

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E    PD   Y  ++  +C  GN      +L +M+E     DA  +D ++ G C+  + +
Sbjct: 236 ESDCKPDKFIYTRVINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFD 295

Query: 226 EAFVLLRRMVDDG---QSVLYST-------------YAHVMGALLRLGYYAQAVKFV--- 266
           EA V+L+  ++ G     V Y               Y+ +M  L + G    A + +   
Sbjct: 296 EALVVLKVSIEAGCEPDEVTYFKLAQERKCPATNLLYSRLMKCLCKTGKVEAACQLLEDL 355

Query: 267 --------MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                    + GG   K D  ++  +   L  +   +E   ++K M +R +K
Sbjct: 356 TNGSRESEQLLGGDGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGVK 407



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 4/198 (2%)

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARL-DKGFP-RKSAYDTLIGRLCKLKKIDEALRVVD 127
           A+ +N I      L    D+ R +  L  K F    S  D L+   CK   +D+A+R + 
Sbjct: 101 AHIYNVIFGALAKLQRFQDVFRMVEDLMAKNFTFSDSTADALVRIFCKALAVDKAVRFLK 160

Query: 128 IMAEGGFGLSAITF--HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
            M+  G  ++  TF  + ++  L +G R++EA  L E+M+   V  D+  YN ++     
Sbjct: 161 WMSSKGLQVAMSTFEYNCLIEGLCKGDRIDEALRLYELMRGNNVPADIFTYNNMIECISK 220

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G +     VLK MEE     D   Y  ++ G C+ G  + A VLL RM + G +     
Sbjct: 221 LGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKLGNFKNAVVLLGRMKEAGYAPDAVV 280

Query: 246 YAHVMGALLRLGYYAQAV 263
           +  ++G L +   + +A+
Sbjct: 281 FDCIIGGLCKTSKFDEAL 298



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 12/165 (7%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           S++ D    +   D+GF            P    Y   +   C+  ++D+A R++++M E
Sbjct: 379 SIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEMMVE 438

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     I+++ +L  L    + EEA  L +VM E  + P++  Y  L+ A C    L  
Sbjct: 439 AGCYPDVISYNTLLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCSTKKLEG 498

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
              +   M+  K   D  TY AL+LG  +   V EA  LL +  D
Sbjct: 499 ARHLFNFMKLSKCVPDMETYKALILGHYQNEGVREARQLLEQESD 543



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 5/145 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LC +   DE   VV  M E G    A+ +   L    R  R+++A  L
Sbjct: 373 PDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRL 432

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E+M E    PD+ +YN LL A C  G       + + M E  +  +  TY  L+   C 
Sbjct: 433 LEMMVEAGCYPDVISYNTLLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCS 492

Query: 221 AGRVEEA-----FVLLRRMVDDGQS 240
             ++E A     F+ L + V D ++
Sbjct: 493 TKKLEGARHLFNFMKLSKCVPDMET 517



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 11/159 (6%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEG-----------GFGLSAITFHPILSVLTRGKRM 154
           Y  L+  LCK  K++ A ++++ +  G           G     + +  ++  L      
Sbjct: 332 YSRLMKCLCKTGKVEAACQLLEDLTNGSRESEQLLGGDGCKPDVVMYSIVIDALCAMGMT 391

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + +++ M+E  V PD   Y   L A+C    L     +L+ M E     D  +Y+ L
Sbjct: 392 DEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEMMVEAGCYPDVISYNTL 451

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +   C AG+ EEA  L + MV+ G      TY  ++ AL
Sbjct: 452 LFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRAL 490



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 30/186 (16%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y  +I   CKL     A+ ++  M E G+   A+ F  I+  L +  + +EA  +
Sbjct: 241 PDKFIYTRVINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVV 300

Query: 161 MEVMKEIRVSPDLTA----------------YNYLLTAYCFKGNLTATSGVLKKM----- 199
           ++V  E    PD                   Y+ L+   C  G + A   +L+ +     
Sbjct: 301 LKVSIEAGCEPDEVTYFKLAQERKCPATNLLYSRLMKCLCKTGKVEAACQLLEDLTNGSR 360

Query: 200 -EEEKLGADARTYD----ALVLGA-CRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVM 250
             E+ LG D    D    ++V+ A C  G  +E FV+++ M + G    +V+Y+ + +  
Sbjct: 361 ESEQLLGGDGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAF 420

Query: 251 GALLRL 256
               RL
Sbjct: 421 CRSARL 426


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A   LI  LCK +K+DEA  +   M      L+   ++ ++S   R   +E+A+  
Sbjct: 333 PDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKT 392

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+     PD+  YN LL  YC  G       +++KME   +  D  +Y+ L+ G C+
Sbjct: 393 VSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCK 452

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A ++++AF  +   ++ G      +   ++ A  R      A+      G + I+ D   
Sbjct: 453 AHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVT 512

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +G L + L G+   N A  +  +M
Sbjct: 513 YGILINGLFGIGYSNLAEELFDQM 536



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 21/262 (8%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCF-------NTANTFNF 75
           + ++G F  +     +D++V +   E  ++  R++     ++CCF       N A    F
Sbjct: 170 YARAGKF--DSVIETFDEMVTSGCREFGVDYNRFI-GVMIKNCCFDLVEKYYNMALAKGF 226

Query: 76  ITNTENSLSVLSDLCRT---------LARLDK--GFPRKSAYDTLIGRLCKLKKIDEALR 124
                     ++ LC++         L  +DK   FP   A +  +  LC   ++ +AL+
Sbjct: 227 CLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQ 286

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +V+ M   G G   +T+  ++S L   +R  EA GL E M    + PD+ A   L+   C
Sbjct: 287 MVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLC 346

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
               +     +  +M    +  +   Y+AL+ G  RAG +E+A+  +  M  +G      
Sbjct: 347 KNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVV 406

Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
           TY  ++     +G   +A   +
Sbjct: 407 TYNILLNHYCSIGMTDKAENLI 428



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+   C +   D+A  ++  M   G      +++ +L  L +  ++++A+  
Sbjct: 403 PDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAF 462

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +    E+    D+ + N L+ A+C    + +   + K+M  + + ADA TY  L+ G   
Sbjct: 463 VSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFG 522

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G    A  L  +M++       + Y  ++  L ++G++  A K       +++  DT  
Sbjct: 523 IGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVT 582

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F +L   L    R  EA  + KEM  + ++
Sbjct: 583 FNTLIYWLGKSSRAVEALDLFKEMRTKGVE 612



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 13/185 (7%)

Query: 85  VLSDLCRTLARLDKGFPRKSAY------------DTLIGRLCKLKKIDEALRVVDIMAEG 132
           +L  LC+   +LDK F   S +            + LI   C+ KK++ AL +   M   
Sbjct: 446 LLKGLCKA-HQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYK 504

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G    A+T+  +++ L        A  L + M   ++ P++  YN +L   C  G+    
Sbjct: 505 GIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHA 564

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  +M ++++  D  T++ L+    ++ R  EA  L + M   G      T+ +++  
Sbjct: 565 QKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISG 624

Query: 253 LLRLG 257
           LL  G
Sbjct: 625 LLDEG 629



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 51/118 (43%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P  + Y+ ++  LCK+     A ++   M +       +TF+ ++  L +  R  EA
Sbjct: 540 KIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEA 599

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
             L + M+   V PD   + Y+++    +G  T    + + M E  +  D    + L+
Sbjct: 600 LDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGIILDRDVSERLI 657


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 116/267 (43%), Gaps = 37/267 (13%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-------FITNTENSLSV 85
           P +  Y+ L+N      ++++   + N   +  C    +++N        I +TE ++S+
Sbjct: 398 PNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSM 457

Query: 86  LSDLCR--------TLARLDKGF----------------------PRKSAYDTLIGRLCK 115
           L+++ +        T   + KG+                      P + +Y  LI   CK
Sbjct: 458 LTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCK 517

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
           + K++ A  + + M + G   + +T+  ++S   + ++++ A  ++E MK     P++  
Sbjct: 518 ISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQT 577

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           YN L+     + N +    + K M EEK+  D  TY  ++ G C  G +  A  +  +MV
Sbjct: 578 YNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMV 637

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQA 262
             G      TY+ ++ AL + G   +A
Sbjct: 638 KHGCLPNLHTYSSLIQALGQEGRVEEA 664



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P +  Y  LI   CK +K+D A R+++ M   G   +  T++ ++  LT+    
Sbjct: 532 MDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNF 591

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
             A  L +VM E ++SPD+  Y+ ++   C  G +     +  KM +     +  TY +L
Sbjct: 592 SGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSL 651

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGR 272
           +    + GRVEEA  +   +   G      TY  ++   +  G   +A  F+  M+  G 
Sbjct: 652 IQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGC 711

Query: 273 DIKLDT 278
              L T
Sbjct: 712 QPTLQT 717



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 7/204 (3%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  S+Y+ LI   C +   ++A+ ++  M +G    + +T++ I+         + A  
Sbjct: 432 LPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIR 491

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++E+MK     PD  +Y  L++ +C    +   SG+  +M +  L  +  TY AL+ G C
Sbjct: 492 VLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYC 551

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +  +++ A  +L RM   G      TY  ++  L +   ++ A +   V     I  D  
Sbjct: 552 KDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVV 611

Query: 280 LFGSL-------GSKLIGLERFNE 296
            + ++       G+  + LE FN+
Sbjct: 612 TYSTVINGLCNNGAIPLALEMFNK 635



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 78/181 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TL+ +L KL      +     +   G   + + ++ +++ L +   + +A  ++  + 
Sbjct: 196 YTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVF 255

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  + PD   Y  ++  YC   +L +   +  +M+EE    +A TY  L+ G C +GRV 
Sbjct: 256 KSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVN 315

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA   +  M   G      T+   + AL  +G    A K  +    +  K +   + SL 
Sbjct: 316 EALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLI 375

Query: 286 S 286
           S
Sbjct: 376 S 376



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 126/337 (37%), Gaps = 61/337 (18%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDL 89
           P    Y  L++    +  L+    +L +  R  C     T+N + +    +N+ S   +L
Sbjct: 538 PNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 597

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C+ +   +K  P    Y T+I  LC    I  AL + + M + G   +  T+  ++  L 
Sbjct: 598 CKVMLE-EKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALG 656

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLT-----------------AYNYL---LTAYC----- 184
           +  R+EEA  +   +K+  + PD                   A+++L   + A C     
Sbjct: 657 QEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQ 716

Query: 185 -----FKG--------------NLTATS------------GVLK-KMEEEKLGADARTYD 212
                 KG              N  +TS             VL  K+ E       + YD
Sbjct: 717 TYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYD 776

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           AL+    R+GR  EA  L R MV   Q     TY H + +LLR      A+        +
Sbjct: 777 ALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQ 836

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             +L    +  L   L  L R  EA F+ ++M  R L
Sbjct: 837 RCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRAL 873



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 116/323 (35%), Gaps = 56/323 (17%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ ++NA   + ++     ++NK      F +    +  T T    S++   CR
Sbjct: 225 QPNLLIYNSVINALCKDGNVRDAESIINK-----VFKSGMKPDTFTYT----SMILGYCR 275

Query: 92  TLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
               LD  F            P  + Y TLI  LC   +++EAL  +  M   G   +  
Sbjct: 276 N-RDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVH 334

Query: 140 TF-HPILSVLTRGKRMEEAW--------------------------------GLMEVMKE 166
           TF  PI+++   G R+E+AW                                GL   M  
Sbjct: 335 TFTAPIVALCDMG-RIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSR 393

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             V P+   YN L+        + +   V   M +     +  +Y+ L+ G C  G  E+
Sbjct: 394 DGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEK 453

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  +L  M+    +    TY  ++      G    A++ + +      + D   +  L S
Sbjct: 454 AMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELIS 513

Query: 287 KLIGLERFNEANFILKEMNKRDL 309
               + +   A+ +  EM  R L
Sbjct: 514 GFCKISKMELASGMFNEMMDRGL 536



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 11/191 (5%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +PT   YD L+    +E     +  L N         + +TF+     ++ +SVLS    
Sbjct: 712 QPTLQTYDVLIKGLQNEMVYHKLVALPNAA-------STSTFDDQIINKDVISVLSS--- 761

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
            LA LD    R+  YD L+ RL +  +  EA  +   M       +  T+   L  L R 
Sbjct: 762 KLAELDFELSRQ-LYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRA 820

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +++ A  + + M + R    LT Y  L+   C          V +KM    L AD   +
Sbjct: 821 LKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVW 880

Query: 212 DALVLGACRAG 222
             L+ G   AG
Sbjct: 881 TILINGLLGAG 891


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 92/204 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A   LI  LCK +K+DEA  +   M      L+   ++ ++S   R   +E+A+  
Sbjct: 333 PDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKT 392

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+     PD+  YN LL  YC  G       +++KME   +  D  +Y+ L+ G C+
Sbjct: 393 VSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCK 452

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A ++++AF  +   ++ G      +   ++ A  R      A+      G + I+ D   
Sbjct: 453 AHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVT 512

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +G L + L G+   N A  +  +M
Sbjct: 513 YGILINGLFGIGYSNLAEELFDQM 536



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 21/262 (8%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCF-------NTANTFNF 75
           + ++G F  +     +D++V +   E  ++  R++     ++CCF       N A    F
Sbjct: 170 YARAGKF--DSVIETFDEMVTSGCREFGVDYNRFI-GVMIKNCCFDLVEKYYNMALAKGF 226

Query: 76  ITNTENSLSVLSDLCRT---------LARLDK--GFPRKSAYDTLIGRLCKLKKIDEALR 124
                     ++ LC++         L  +DK   FP   A +  +  LC   ++ +AL+
Sbjct: 227 CLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQ 286

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +V+ M   G G   +T+  ++S L   +R  EA GL E M    + PD+ A   L+   C
Sbjct: 287 MVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLC 346

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
               +     +  +M    +  +   Y+AL+ G  RAG +E+A+  +  M  +G      
Sbjct: 347 KNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVV 406

Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
           TY  ++     +G   +A   +
Sbjct: 407 TYNILLNHYCSIGMTDKAENLI 428



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+   C +   D+A  ++  M   G      +++ +L  L +  ++++A+  
Sbjct: 403 PDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAF 462

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +    E+    D+ + N L+ A+C    + +   + K+M  + + ADA TY  L+ G   
Sbjct: 463 VSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFG 522

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G    A  L  +M++       + Y  ++  L ++G++  A K       +++  DT  
Sbjct: 523 IGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVT 582

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F +L   L    R  EA  + KEM  + ++
Sbjct: 583 FNTLIYWLGKSSRAVEALDLFKEMRTKGVE 612



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 13/185 (7%)

Query: 85  VLSDLCRTLARLDKGFPRKSAY------------DTLIGRLCKLKKIDEALRVVDIMAEG 132
           +L  LC+   +LDK F   S +            + LI   C+ KK++ AL +   M   
Sbjct: 446 LLKGLCKA-HQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYK 504

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G    A+T+  +++ L        A  L + M   ++ P++  YN +L   C  G+    
Sbjct: 505 GIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHA 564

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  +M ++++  D  T++ L+    ++ R  EA  L + M   G      T+ +++  
Sbjct: 565 QKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISG 624

Query: 253 LLRLG 257
           LL  G
Sbjct: 625 LLDEG 629



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 51/118 (43%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P  + Y+ ++  LCK+     A ++   M +       +TF+ ++  L +  R  EA
Sbjct: 540 KIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEA 599

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
             L + M+   V PD   + Y+++    +G  T    + + M E  +  D    + L+
Sbjct: 600 LDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGIILDRDVSERLI 657


>gi|195650415|gb|ACG44675.1| hypothetical protein [Zea mays]
          Length = 558

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 3/216 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   ++ T +  LC+    DEA   +D M   GF  S  TF  ++  L +  R+ +A  +
Sbjct: 175 PDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEV 234

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M  +   P +  YN L+   C+ G L     +LKK+++  L  D  T+  ++ G C+
Sbjct: 235 LDAMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCK 294

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM-VCGGRDIKLDTE 279
            GR EEA  +    +  G S    TY  ++    + G   +A   +M +CG  D     +
Sbjct: 295 VGRTEEATAIFHDAIGMGLSPTTFTYNALLNGXCKEGNPLKAFALLMEMCGNNDAACLPD 354

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
              S G  L  L R  E +   +   KR  + GF++
Sbjct: 355 KT-SFGIVLTALLRAGETSAAWQTY-KRMERAGFEV 388



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
            ++E ++V+D++      L+   ++ ILS L R      A  L   M    V+PD  ++ 
Sbjct: 125 PVEERVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFRAMP---VAPDAHSFA 181

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
             +   C +G        L +M          T+ A+V   C+ GRV +A  +L  M+  
Sbjct: 182 TAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGL 241

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G      TY  ++G L  +G   +A++ +
Sbjct: 242 GCEPTIRTYNSLVGGLCYVGRLEEALELL 270



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 43/209 (20%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG- 159
           P    Y++L+G LC + +++EAL ++  + +        TF  +L    +  R EEA   
Sbjct: 245 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAI 304

Query: 160 -----------------------------------LMEVM--KEIRVSPDLTAYNYLLTA 182
                                              LME+    +    PD T++  +LTA
Sbjct: 305 FHDAIGMGLSPTTFTYNALLNGXCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIVLTA 364

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR-----AGRVEEAFVLLRRMVDD 237
               G  +A     K+ME      D R  D L  G CR     A  + +A  +  ++V  
Sbjct: 365 LLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEVFGKVVAS 424

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G   +  TY  +  AL R G    AV  +
Sbjct: 425 GHEPVSYTYCLMAQALARGGEVDAAVALL 453



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 3/156 (1%)

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +EE   ++++++    +  ++ YN +L+A    G+      + + M    +  DA ++  
Sbjct: 126 VEERVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFRAM---PVAPDAHSFAT 182

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
            V   CR G  +EA + L  MV  G     +T++ V+G L + G   +A++ +    G  
Sbjct: 183 AVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGLG 242

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +     + SL   L  + R  EA  +LK++    L
Sbjct: 243 CEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPL 278


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 2/194 (1%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRK-SAYDTLIGRLCKLKKIDEAL 123
           C  + + +  + N   S   L +  +   +  K GFP +    + ++G  C+  K + A 
Sbjct: 336 CMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAF 395

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           ++VD M E   G ++ T+  IL  L + ++ EEA+ + + M      P L  Y  ++  +
Sbjct: 396 KMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMF 455

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C  G +     V K+M E  +      + AL+ G C   R+EEA V  + M+D G     
Sbjct: 456 CSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPG 515

Query: 244 STYAHVMGALLRLG 257
             ++++  AL+  G
Sbjct: 516 QLFSNLKEALVEGG 529



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 1/216 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D G  P   AY  LI   CK  K DEA++V   M   G   S   +  +++ L   +R+
Sbjct: 297 IDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERL 356

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA    E  K+     ++   N ++ AYC          ++ +M E K+G ++RTYD +
Sbjct: 357 DEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVI 416

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +    ++ + EEA+ + +RM  DG     +TY  ++G     G    A+      G R +
Sbjct: 417 LHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMGERGV 476

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                +F +L + L    R  EA    +EM  + ++
Sbjct: 477 LPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIR 512



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 81/212 (38%), Gaps = 19/212 (8%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG---- 159
           S Y+ LI  L K K++ +A  +   M   G       F P L   T    + E WG    
Sbjct: 235 SDYNWLIDTLSKSKQVKKAQAIYKEMKRKG------KFVPDLKTYTV---LMEGWGHEKD 285

Query: 160 ------LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
                 + + M +  + PD+ AY  L++A+C  G       V  +ME          Y  
Sbjct: 286 LLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCM 345

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+ G     R++EA     +    G  +   T   V+GA  R   +  A K V       
Sbjct: 346 LINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECK 405

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           I  ++  +  +   LI  ++F EA  + + M 
Sbjct: 406 IGPNSRTYDVILHYLIKSQKFEEAYNVFQRMG 437



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 2/208 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +  LI  L K+K+      +V+ M   G  LS  TF  I+    R ++++EA    E M
Sbjct: 167 GFHNLIEALGKIKQFKLVWSLVETMRCRGL-LSKDTFKLIVRRYARARKVKEAVETFEKM 225

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGACRAGR 223
               +  +L+ YN+L+        +     + K+M+ + K   D +TY  L+ G      
Sbjct: 226 SIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKD 285

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           +     + + M+D G       Y  ++ A  + G   +A+K               ++  
Sbjct: 286 LLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCM 345

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLKM 311
           L + L   ER +EA    ++  K    M
Sbjct: 346 LINGLGSEERLDEALKYFEQYKKSGFPM 373



 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 75/205 (36%), Gaps = 24/205 (11%)

Query: 33  PTSAYYDDLVNAAGHERDL-ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           P+   Y  L+N  G E  L E ++Y          F       F        +V+   CR
Sbjct: 338 PSPHVYCMLINGLGSEERLDEALKY----------FEQYKKSGFPMEVPTCNAVVGAYCR 387

Query: 92  TLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
             ++ +  F            P    YD ++  L K +K +EA  V   M   G      
Sbjct: 388 A-SKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLN 446

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  ++ +     R++ A  + + M E  V P +  ++ L+   CF+  L       ++M
Sbjct: 447 TYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEM 506

Query: 200 EEEKLGADARTYDALVLGACRAGRV 224
            ++ +    + +  L       GR+
Sbjct: 507 LDKGIRPPGQLFSNLKEALVEGGRI 531


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 102/244 (41%), Gaps = 40/244 (16%)

Query: 81  NSLSVLSDLCRTLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           NSL  LS +   ++ L K F     P    + TLI  LC   +I EA+ + + MA     
Sbjct: 129 NSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAM 188

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
            + +TF  ++ VL +   + EA  + E M E  V P++  YN L+  YC +  +   S V
Sbjct: 189 PNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKV 248

Query: 196 -----------------------------------LKKMEEEKLGADARTYDALVLGACR 220
                                              L +M E++L  +  TY+ L+ G C 
Sbjct: 249 FEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCH 308

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A  + EA  L ++M   G      TY+ ++  L + G+  +A+K +     R ++ D  L
Sbjct: 309 ASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVL 368

Query: 281 FGSL 284
           +  L
Sbjct: 369 YNIL 372



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 124/296 (41%), Gaps = 9/296 (3%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           L+  L  K ++ ++  V  + T+ G    EP    Y+ L+N      ++     +     
Sbjct: 197 LVDVLCKKGMVSEARCVFETMTEKGV---EPNIYTYNALMNGYCLRLEMNDASKVFEIMV 253

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKID 120
              C  + ++++ + N       + +    L ++ +    P    Y+TL+  LC    + 
Sbjct: 254 GKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLL 313

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           EA  +   M   G   +  T+  +L  L +   +EEA  L+  M+E ++ PD+  YN L+
Sbjct: 314 EAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILI 373

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
                 G L     +  K+    +    RTY+ ++ G  + G  +EA+ L R+M DDG  
Sbjct: 374 QGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFL 433

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
               +Y  ++   L+    + A++ +    GR    D+  F      L+ LE  +E
Sbjct: 434 PDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTF----KMLLDLESHDE 485



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 87/198 (43%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + LI  LC+L  I  A+ V+  M + G    ++TF  +++ L    R++EA  L   M  
Sbjct: 125 NILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAG 184

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
               P+   +  L+   C KG ++    V + M E+ +  +  TY+AL+ G C    + +
Sbjct: 185 RDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMND 244

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  +   MV  G +    +Y+ ++    +     +A   +     +++  +T  + +L  
Sbjct: 245 ASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQ 304

Query: 287 KLIGLERFNEANFILKEM 304
            L       EA  + K+M
Sbjct: 305 GLCHASSLLEAQELFKKM 322



 Score = 37.7 bits (86), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 57/144 (39%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           ID+A+     M       S +     L  + + K+      L   M    V+ +    N 
Sbjct: 67  IDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNI 126

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+ + C   ++     VL KM +  +  D+ T+  L+ G C  GR++EA  L   M    
Sbjct: 127 LINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRD 186

Query: 239 QSVLYSTYAHVMGALLRLGYYAQA 262
                 T+  ++  L + G  ++A
Sbjct: 187 AMPNTVTFTILVDVLCKKGMVSEA 210


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 76/165 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y + +  LCK  +  EA ++ D M + G      T+  +L        + E  GL
Sbjct: 301 PNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGL 360

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M +  + PD   +N L+ A   +G +     V  KM ++ L  +  TY  L+ G C+
Sbjct: 361 FDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCK 420

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             R+E A  L + MV +G S  + TY  ++  L R G  A A +F
Sbjct: 421 ITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEF 465



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 2/186 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKRMEEAW 158
           P   ++  ++  LC   +  EAL ++ +MA+ G G   + +++  ++  L +G   ++A+
Sbjct: 159 PNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAY 218

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
                M + R+ P++  Y+ ++ A C    +     V  +M +  +  +  TY +LV G 
Sbjct: 219 ATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGF 278

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C +G++ EA   L +M  +G      TY+  M  L + G   +A K       R +K D 
Sbjct: 279 CSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDI 338

Query: 279 ELFGSL 284
             + SL
Sbjct: 339 TTYSSL 344



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 14/218 (6%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y T+I  L K    D+A      M +     + + +  I++ L +G+ M++A  
Sbjct: 195 LPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAME 254

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M +  V+P+   Y  L+  +C  G LT     L+KM    +  +  TY + +   C
Sbjct: 255 VHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLC 314

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM------GALLRL-GYYAQAVKFVMVCGGR 272
           + GR  EA  +   MV  G     +TY+ ++      GAL+ + G +   V+        
Sbjct: 315 KNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQ-------S 367

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           D++ D  +F +L        + +EA  +  +M ++ LK
Sbjct: 368 DMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLK 405



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 96/248 (38%), Gaps = 38/248 (15%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LIG  C   ++D     +  + + GF +  I F+P+L  L   KR ++A  +
Sbjct: 88  PTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDI 147

Query: 161 -MEVMKEIRVSPDLTAYNYLLTAYCFK------------------GNL-------TATSG 194
            +  M E+   P++ ++  +L   C +                  G L       T   G
Sbjct: 148 VLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDG 207

Query: 195 VLKKMEEEKLGADAR------------TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           +LK  + +K  A  R             Y +++   C+   +++A  +  RMV +G +  
Sbjct: 208 LLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPN 267

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
             TY  ++      G   +A+KF+       ++ +   + S    L    R  EA  I  
Sbjct: 268 CFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFD 327

Query: 303 EMNKRDLK 310
            M KR LK
Sbjct: 328 SMVKRGLK 335


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 73/144 (50%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R +   P   AY +LI  LCK  +I+ AL+ VD M + G   + IT+  ++  L +  ++
Sbjct: 356 RNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQV 415

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ +K+  +  ++  YN L+   C  G LT    V + +  +    D  TY  +
Sbjct: 416 DKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIM 475

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG 238
           + G C+    +EA  LL +M D G
Sbjct: 476 INGLCKESLFDEALTLLSKMEDKG 499



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 97/207 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+     +K+  +A  V +IMA+ G      ++  ++S L++ K ++EA  L
Sbjct: 292 PDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDL 351

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M+   V PD+ AY+ L+   C  G + +    + +M +     +  TY +L+   C+
Sbjct: 352 FEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCK 411

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           + +V++A  LL+++ D G      TY  ++  L + G    A K       +   +D   
Sbjct: 412 SHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVT 471

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           +  + + L     F+EA  +L +M  +
Sbjct: 472 YSIMINGLCKESLFDEALTLLSKMEDK 498



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 94/205 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y TLI  LCK+ +   ALR++  +         + ++ I+  L + K + +A+ L   M
Sbjct: 156 SYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEM 215

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            E RV P++  Y  L+  +C  G L    G+L +M  + +  +  T++ LV G C+ G++
Sbjct: 216 FEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKM 275

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EA  L+  M+ +G      TY  +M     +    +A     +     +  D   +  +
Sbjct: 276 REAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVM 335

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            S L  ++  +EA  + + M   ++
Sbjct: 336 ISGLSKMKMLDEAMDLFEGMRNENV 360



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 12/224 (5%)

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           + +LDK F            P    ++TL+  LCK  K+ EA  +V +M + G G    T
Sbjct: 237 VGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFT 296

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++      K   +A  +  +M ++ V+ D+ +Y+ +++       L     + + M 
Sbjct: 297 YNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMR 356

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            E +  D   Y +L+ G C++GR+  A   +  M D GQ     TY  ++ AL +     
Sbjct: 357 NENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVD 416

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +A+  +     + I+ +   +  L   L    R  +A  + +++
Sbjct: 417 KAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDL 460



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 92/211 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y +LI   C + ++D+A  +++ M       +  TF+ ++  L +  +M EA  
Sbjct: 221 FPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKS 280

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+ VM +  V PD+  YN L+  Y           V   M +  +  D  +Y  ++ G  
Sbjct: 281 LVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLS 340

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +   ++EA  L   M ++        Y+ ++  L + G    A+K+V     R    +  
Sbjct: 341 KMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVI 400

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            + SL   L    + ++A  +LK++  + ++
Sbjct: 401 TYTSLIDALCKSHQVDKAIALLKKIKDQGIQ 431



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 97/210 (46%), Gaps = 6/210 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LCK K + +A  +   M E     + +T+  ++       ++++A+GL
Sbjct: 187 PDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGL 246

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG--- 217
           +  M    V+P++  +N L+   C +G +     ++  M +E +G D  TY+AL+ G   
Sbjct: 247 LNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFL 306

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
              AG+ +  F ++ +M   G +    +Y+ ++  L ++    +A+         ++  D
Sbjct: 307 VKEAGKAKNVFNIMAQM---GVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPD 363

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
              + SL   L    R N A   + EM+ R
Sbjct: 364 VVAYSSLIDGLCKSGRINSALKYVDEMHDR 393



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 2/199 (1%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T N + N+   L  ++      A++ K G+ P    Y TLI  LC   ++ E+L   D +
Sbjct: 86  TLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRL 145

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G  L  +++  +++ L +  +   A  L+  ++     PD+  YN ++   C    +
Sbjct: 146 VSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLV 205

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +  +M E+++  +  TY +L+ G C  G++++AF LL  MV    +    T+  +
Sbjct: 206 RDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTL 265

Query: 250 MGALLRLGYYAQAVKFVMV 268
           +  L + G   +A   V V
Sbjct: 266 VDGLCKEGKMREAKSLVAV 284



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 63/146 (43%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           I F  IL  L + K       L + M+   +  +    N L+ +YC    + +   V  K
Sbjct: 50  IKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAK 109

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           + +     D  TY  L+ G C  G+V+E+     R+V  G  + + +Y  ++  L ++G 
Sbjct: 110 ILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQ 169

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSL 284
              A++ +    G   + D  ++ ++
Sbjct: 170 TGPALRLLRKIEGEICRPDVVMYNTI 195



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 97  DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G P     Y +LI  LCK  ++D+A+ ++  + + G   +  T++ ++  L +  R+ 
Sbjct: 392 DRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLT 451

Query: 156 EAWGLME--VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +A  + +  +MK   V  D+  Y+ ++   C +        +L KME++    DA  Y+ 
Sbjct: 452 DAQKVFQDLLMKGHNV--DVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYET 509

Query: 214 LVLGACRAGRVEEAFVLLRRMVD 236
           ++         ++A  LLR M+D
Sbjct: 510 IINAFFEKDMNDKAEKLLREMID 532



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/156 (19%), Positives = 68/156 (43%), Gaps = 2/156 (1%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           +SL  L+D   +  R+ +  P      +  ++G L K K     + +   M   G   + 
Sbjct: 25  HSLPNLNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNY 84

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           IT + +++     +++  A+ +   + ++   PD+  Y  L+   C  G +  +     +
Sbjct: 85  ITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDR 144

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +  + +  D  +Y  L+ G C+ G+   A  LLR++
Sbjct: 145 LVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKI 180


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 91/187 (48%), Gaps = 7/187 (3%)

Query: 93  LARLDKG------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           + R+++G      FP      TL+    K + +  + R   +  + G+    + F+ +LS
Sbjct: 587 IERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLS 646

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           + TR    ++A G+++ + E  ++PDL  YN L+  Y  +G       +LK +E+ +L  
Sbjct: 647 IFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKP 706

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D  +Y+ ++ G CR G ++EA  +L  M + G      TY   +     +G Y + ++ V
Sbjct: 707 DLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGE-IEDV 765

Query: 267 MVCGGRD 273
           + C  ++
Sbjct: 766 IECMAKN 772



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 61/143 (42%)

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           L V++ M   G      T   +LS   R   + EA      +K     P    YN LL  
Sbjct: 273 LGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQV 332

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           +   G  T    VLK+MEE    AD+ TY+ LV    RAG  +EA V++  M   G    
Sbjct: 333 FGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPN 392

Query: 243 YSTYAHVMGALLRLGYYAQAVKF 265
             TY  V+ A  + G   +A+K 
Sbjct: 393 AITYTTVIDAYGKAGKEDEALKL 415



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 8/204 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I    K  K DEAL++   M E G   +  T++ +LS+L +  R  E   +
Sbjct: 391 PNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKM 450

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK     P+   +N +L     KG     + V ++M+      D  T++ L+    R
Sbjct: 451 LCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGR 510

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G   +A  +   M   G +   +TY  ++ AL R G +      +     +  K  TE 
Sbjct: 511 CGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFK-PTET 569

Query: 281 FGSL-------GSKLIGLERFNEA 297
             SL       G   +G+ER  E 
Sbjct: 570 SYSLMLQCYAKGGNYLGIERIEEG 593



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 2/137 (1%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G+    +T++ +L V  +     EA  +++ M+E     D   YN L+ AY   G     
Sbjct: 318 GYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEA 377

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + V++ M ++ +  +A TY  ++    +AG+ +EA  L   M + G      TY  V+  
Sbjct: 378 AVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSM 437

Query: 253 LLRLGYYAQAVKFVMVC 269
           L +     + +K  M+C
Sbjct: 438 LGKKSRSNEMIK--MLC 452



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 113/284 (39%), Gaps = 10/284 (3%)

Query: 33  PTSAYYDDLVNAAGHE-RDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           P +  Y+ +++  G + R  E ++ L + ++  C  N A T+N I     +  +   + R
Sbjct: 426 PNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRA-TWNTILALCGNKGMDKFVNR 484

Query: 92  TLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               +   GF P +  ++TLI    +     +A ++   M   GF     T++ +L+ L 
Sbjct: 485 VFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALA 544

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R         ++  MK     P  T+Y+ +L  Y   GN      + + + E ++     
Sbjct: 545 RKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWM 604

Query: 210 TYDALVLG--ACRA-GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
               L+L    CRA    E AF L ++       V++++   ++    R   Y QA   +
Sbjct: 605 LLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNS---MLSIFTRNNMYDQAEGIL 661

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                  +  D   + SL    +      +A  ILK + K  LK
Sbjct: 662 QSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLK 705



 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 7/146 (4%)

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A +++D +    + L    +  IL   +R  + E+A  L E MKE+  SP L  YN +L 
Sbjct: 201 AAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILD 260

Query: 182 AYCFKG-NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA---FVLLRRMVDD 237
            +   G +     GVL++M  + L  D  T   ++    R G + EA   F  L+    +
Sbjct: 261 VFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYE 320

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAV 263
             +V Y+    V G   + G Y +A+
Sbjct: 321 PGTVTYNALLQVFG---KAGVYTEAL 343



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/189 (18%), Positives = 76/189 (40%), Gaps = 44/189 (23%)

Query: 90  CRTLARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           CR LA  ++ F         P    +++++    +    D+A  ++  + E G     +T
Sbjct: 616 CRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVT 675

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++ +  R     +A  +++ +++ ++ PDL +YN ++  +C KG +     +L +M 
Sbjct: 676 YNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMT 735

Query: 201 EEKLGA-------------------------------DAR----TYDALVLGACRAGRVE 225
           E  +                                 D R    T+  +V G CRAG+  
Sbjct: 736 ERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYS 795

Query: 226 EAFVLLRRM 234
           EA   + ++
Sbjct: 796 EAMDFVSKI 804


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LIG  C   K+D AL   D M E G  ++  T++ ++  L    R  EA+ L
Sbjct: 215 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 274

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    ++PD+  YN L+  +C +GN+     + + M    + A   TY AL+    +
Sbjct: 275 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSK 334

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+E   L    V  G       Y  ++ +    G   +A + +     + I  D   
Sbjct: 335 KGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVT 394

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L   L  L R +EA  ++ EM +R ++
Sbjct: 395 YNTLMRGLCLLGRVDEARKLIDEMTERGIQ 424



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 75/148 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI        ID A  ++  M +       +T++ ++  L    R++EA  L++ M 
Sbjct: 360 YNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMT 419

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  + PDL  YN L++ Y  KG++     +  +M  +       TY+AL+ G C+ G+ +
Sbjct: 420 ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 479

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +A  +++ MV++G +   STY  ++  L
Sbjct: 480 DAENMVKEMVENGITPDDSTYISLIEGL 507



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P +  Y T+I   CK+ ++DEA++V D ++ +G     A+ ++ ++       +++ A  
Sbjct: 179 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALL 238

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M E  V+  +  YN L+ A    G  T    ++++M  + L  D  TY+ L+ G C
Sbjct: 239 YRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHC 298

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G V++A  +   M   G      TY  ++ AL + G   +  K       R I+ D  
Sbjct: 299 KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLV 358

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
           L+ +L +        + A  I+ EM K+
Sbjct: 359 LYNALINSHSTSGNIDRAFEIMGEMEKK 386



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 73/161 (45%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  L K  ++ E  ++ D     G     + ++ +++  +    ++ A+ +M  M+
Sbjct: 325 YTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEME 384

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + R++PD   YN L+   C  G +     ++ +M E  +  D  TY+ L+ G    G V+
Sbjct: 385 KKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVK 444

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A  +   M++ G +    TY  ++  L + G    A   V
Sbjct: 445 DALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 485


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 82/166 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + +LI   C+   I   L+V D+M       +  T+  I++ L +  R+ EA  L
Sbjct: 337 PDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDL 396

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +K   V P    YN ++  +C  GN+   + ++ +MEE++   D  T+  L++G C 
Sbjct: 397 LRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCM 456

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            GR+ EA  + ++M+  G +    T + ++  LL+ G  ++A   V
Sbjct: 457 KGRMVEALDIFKKMLAIGCAPDNITISSLVACLLKAGKPSEAFHIV 502



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 86/217 (39%), Gaps = 20/217 (9%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EPT   ++ L++  G   ++     +  K A   C     TF          S++   CR
Sbjct: 301 EPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFT---------SLIDGYCR 351

Query: 92  T-----------LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           T           + +     P    Y  +I  LCK  +I EA  ++  +           
Sbjct: 352 TGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFI 411

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++P++    +   ++EA  ++  M+E R  PD   +  L+  +C KG +     + KKM 
Sbjct: 412 YNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKML 471

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
                 D  T  +LV    +AG+  EAF +++   +D
Sbjct: 472 AIGCAPDNITISSLVACLLKAGKPSEAFHIVQTASED 508



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 3/215 (1%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---T 79
           F ++ AF   P +  ++ L+       ++E    L N      C     T+N + +    
Sbjct: 186 FKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCK 245

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
            N L    DL + +   +   P    Y ++I    KL K++ A  + + M   G   + +
Sbjct: 246 ANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVV 305

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           TF+ ++    +   M  A  + E M      PD+  +  L+  YC  G++     V   M
Sbjct: 306 TFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVM 365

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +   +  +  TY  ++   C+  R+ EA  LLR++
Sbjct: 366 KARNVSPNIYTYSVIINALCKDNRIHEARDLLRQL 400



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 5/125 (4%)

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           +S+  ++ +L+ L +G ++ EA  L +        P+   +N L+   C  G +     +
Sbjct: 161 ISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFEL 220

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV---DDGQSVLYSTYAHVMGA 252
              M+      D  TY+ L+ G C+A  ++ A  LL+ +    D    V+  TY  ++  
Sbjct: 221 FNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVM--TYTSIISG 278

Query: 253 LLRLG 257
             +LG
Sbjct: 279 FRKLG 283


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 10/259 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    ++ L++  G  R  +    ++ +  R  C  +  T+N + ++     +L     
Sbjct: 257 EPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVA 316

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL- 148
               ++ KG  P    Y TLI  L +  KID A+   D M   G   +  T++ ++ +  
Sbjct: 317 LKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHG 376

Query: 149 TRGKRMEEAWGLMEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            RGK  E    +M V  E R +   PD+  +N LL  +   G  +  SGV K+M++    
Sbjct: 377 VRGKFPE----MMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI 432

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  TY +L+    R G  + A  + +RM++ G     STY  V+ AL R G + QA K 
Sbjct: 433 PERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 492

Query: 266 VMVCGGRDIKLDTELFGSL 284
                 RD K D   + SL
Sbjct: 493 FAEMEERDCKPDEYSYSSL 511



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 13/214 (6%)

Query: 33  PTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTA-NTFNFITNTENSLSV-LS 87
           P +  Y  LV+A   AG  RD   V     +R  D     A  T+N + +  + ++V   
Sbjct: 152 PDAGAYTALVSAFSRAGRFRDAVAV----FRRMVDSGVQPAIVTYNVVLHVYSKMAVPWK 207

Query: 88  DLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKI-DEALRVVDIMAEGGFGLSAITFHPI 144
           ++   +A + +    P +  Y+TLI   C+ + +  EA +V D M   GF    +TF+ +
Sbjct: 208 EVVELVASMKEHGVAPDRYTYNTLIS-CCRRRALYKEAAQVFDEMKASGFEPDKVTFNSL 266

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L V  + +R +EA  +++ M+ +   P +  YN L+++Y   G L     + ++ME + +
Sbjct: 267 LDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGM 326

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             D  TY  L+ G  RAG+++ A V    MV +G
Sbjct: 327 KPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNG 360



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 19/246 (7%)

Query: 30  PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           PDE +   Y  L++A  + + L+ ++ L    + D         N++  T   L +++  
Sbjct: 503 PDEYS---YSSLLHAYANAKRLDKMKAL----SDDIYSERIEPHNWLVKT---LVLVNSK 552

Query: 90  CRTLARLDKGF----PRKSAYD-----TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
              LA  +K F     ++ + D      ++    K + + +  +++ +M E    LSA T
Sbjct: 553 VNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAAT 612

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++ + +R    E+   ++  +K   V PD  +YN ++ AY  KG +   S +  +M+
Sbjct: 613 YNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK 672

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              L  D  TY+  V         EEA  L+R MV  G      TY  ++    R G   
Sbjct: 673 CSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLT 732

Query: 261 QAVKFV 266
            A  FV
Sbjct: 733 DAKIFV 738



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 3/137 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  Y +LI    +    D A+++   M E G      T++ +LS L RG R E+A  
Sbjct: 432 IPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEK 491

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M+E    PD  +Y+ LL AY     L     +   +  E++         LVL   
Sbjct: 492 LFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNS 551

Query: 220 RA---GRVEEAFVLLRR 233
           +       E+AF+ LR+
Sbjct: 552 KVNNLAEAEKAFLELRQ 568



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 4/194 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR-GKRMEEAWG 159
           P   AY  L+    +  +  +A+ V   M + G   + +T++ +L V ++     +E   
Sbjct: 152 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 211

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  MKE  V+PD   YN L++    +      + V  +M+      D  T+++L+    
Sbjct: 212 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 271

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +A R +EA  +++ M   G      TY  ++ + ++ G   QAV        + +K D  
Sbjct: 272 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVV 331

Query: 280 LFGSLGSKLIGLER 293
            + +L S   GL+R
Sbjct: 332 TYTTLIS---GLDR 342



 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 26/131 (19%), Positives = 61/131 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y++L+    +L   ++   ++  +   G      +++ ++    R  +M+EA  L   
Sbjct: 611 ATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSE 670

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           MK   + PD+  YN  + +Y           +++ M  +    + RTY+++V G CR G+
Sbjct: 671 MKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGK 730

Query: 224 VEEAFVLLRRM 234
           + +A + +  +
Sbjct: 731 LTDAKIFVSNL 741



 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY-YAQAV 263
           G DA  Y ALV    RAGR  +A  + RRMVD G      TY  V+    ++   + + V
Sbjct: 151 GPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVV 210

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           + V       +  D   + +L S       + EA  +  EM
Sbjct: 211 ELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEM 251



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 11/220 (5%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           L+ Q+V + +     G  PD  T   Y  L++       ++      ++  R+ C     
Sbjct: 310 LLEQAVALKQEMEVKGMKPDVVT---YTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLC 366

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK----GF-PRKSAYDTLIGRLCKLKKIDEALRVV 126
           T+N +        V       +A  D+    GF P    ++TL+    +     E   V 
Sbjct: 367 TYNALIKMHG---VRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVF 423

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M + G+     T+  ++S  +R    + A  + + M E  + PD++ YN +L+A    
Sbjct: 424 KEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARG 483

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
           G       +  +MEE     D  +Y +L+     A R+++
Sbjct: 484 GRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDK 523


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 76/153 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+TLI   CK K++++ +++   M++ G   + +T++ ++    +   +++A      M
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               +SPD+  YN LL   C  G L     + + M++ ++  D  TY  ++ G C+ G+V
Sbjct: 392 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           EEA+ L   +   G      TY  +M  L   G
Sbjct: 452 EEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 13/240 (5%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           +++  LC+T  R++  F            P    Y  L+  LC   +  +A R++  M +
Sbjct: 195 AIIDSLCKT-KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
                + IT+  +L    +  ++ EA  L E M  + + PD+  Y+ L+   C    +  
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDE 313

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
            + +   M  +   AD  +Y+ L+ G C+A RVE+   L R M   G      TY  ++ 
Sbjct: 314 ANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 373

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
              + G   +A +F        I  D   +  L   L       +A  I ++M KR++ +
Sbjct: 374 GFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 90/194 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++ +I   C   ++  AL ++  M + G+    +T   +++   R  R+ +A  L++ M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            EI   PD+ AYN ++ + C    +       K++E + +  +  TY ALV G C + R 
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A  LL  M+    +    TY+ ++ A ++ G   +A +         I  D   + SL
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301

Query: 285 GSKLIGLERFNEAN 298
            + L   +R +EAN
Sbjct: 302 VNGLCLHDRIDEAN 315



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+ +I  LCK K++++A      +   G   + +T+  +++ L    R  +A  L
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M + +++P++  Y+ LL A+   G +     + ++M    +  D  TY +LV G C 
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCL 307

Query: 221 AGRVEEAFVLLRRMVDDG 238
             R++EA  +   MV  G
Sbjct: 308 HDRIDEANQMFDLMVSKG 325



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 108/244 (44%), Gaps = 2/244 (0%)

Query: 68  NTANTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRV 125
           N   TFN + N       +S     L ++ K G+ P +    +L+   C+  ++ +A+ +
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           VD M E G+    + ++ I+  L + KR+ +A+   + ++   + P++  Y  L+   C 
Sbjct: 178 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 237

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
               +  + +L  M ++K+  +  TY AL+    + G+V EA  L   MV         T
Sbjct: 238 SSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 297

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y+ ++  L       +A +   +   +    D   + +L +     +R  +   + +EM+
Sbjct: 298 YSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 357

Query: 306 KRDL 309
           +R L
Sbjct: 358 QRGL 361



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 90/192 (46%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+++A+ +   M +     S + F+ +LS + + K+ +    L + M+ + +  DL  +N
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++  +C    ++    +L KM +     D  T  +LV G CR  RV +A  L+ +MV+ 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G       Y  ++ +L +      A  F      + I+ +   + +L + L    R+++A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 298 NFILKEMNKRDL 309
             +L +M K+ +
Sbjct: 245 ARLLSDMIKKKI 256



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 104/241 (43%), Gaps = 2/241 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+  + N   + S  SD  R L+ +   K  P    Y  L+    K  K+ EA  + + M
Sbjct: 227 TYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 286

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
                    +T+  +++ L    R++EA  + ++M       D+ +YN L+  +C    +
Sbjct: 287 VRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRV 346

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                + ++M +  L ++  TY+ L+ G  +AG V++A     +M   G S    TY  +
Sbjct: 347 EDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNIL 406

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +G L   G   +A+        R++ LD   + ++   +    +  EA  +   ++ + L
Sbjct: 407 LGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL 466

Query: 310 K 310
           K
Sbjct: 467 K 467



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 5/224 (2%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +++ + SD+ ++     + FP    ++ L+  + KLKK D  + +   M   G      T
Sbjct: 68  DAIDLFSDMVKS-----RPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYT 122

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ +++      ++  A  ++  M ++   PD      L+  +C +  ++    ++ KM 
Sbjct: 123 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E     D   Y+A++   C+  RV +AF   + +   G      TY  ++  L     ++
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            A + +     + I  +   + +L    +   +  EA  + +EM
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 286


>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 101/218 (46%), Gaps = 4/218 (1%)

Query: 95  RLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           R   GF   P   +++TL     K+K +DE    + +M +     + +T+   + +  + 
Sbjct: 118 RASYGFTCKPDIVSFNTLFNGFSKMKMLDEVFVYMGVMLKCC-SPNVVTYSTWIDMFCKS 176

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             ++ A      MK   + P++  +  L+  YC  G+L     + ++M   ++  +  TY
Sbjct: 177 GELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYEEMRRVRMSLNVVTY 236

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
            AL+ G C+ G ++ A  +  RM++D        Y  ++    + G    A+KF+     
Sbjct: 237 TALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQRGDSDNAMKFLAKMLN 296

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + ++LD   +G + S L G+ +  EA  I+++M K DL
Sbjct: 297 QGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDL 334



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 113/260 (43%), Gaps = 4/260 (1%)

Query: 29  FPDEPTSAYYDDLVNAAGHERDLETVRYLLNK-RARD--CCFNTANTFNFITNTENSLSV 85
           F  EP    Y+ L++      D+ +   +L   RA     C     +FN + N  + + +
Sbjct: 85  FGCEPDVISYNSLIDGHCRNGDIRSACLVLESLRASYGFTCKPDIVSFNTLFNGFSKMKM 144

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           L ++   +  + K   P    Y T I   CK  ++  AL+  + M       + +TF  +
Sbjct: 145 LDEVFVYMGVMLKCCSPNVVTYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCL 204

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   +E    L E M+ +R+S ++  Y  L+  +C KG +    G+  +M E+++
Sbjct: 205 IDGYCKAGDLEVVVSLYEEMRRVRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRV 264

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             ++  Y  ++ G  + G  + A   L +M++ G  +  + Y  ++  L  +G   +A +
Sbjct: 265 EPNSLVYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATE 324

Query: 265 FVMVCGGRDIKLDTELFGSL 284
            V      D+  D  +F ++
Sbjct: 325 IVEDMEKGDLVPDMMIFTTM 344



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 85/215 (39%), Gaps = 35/215 (16%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           +++N++  L+ +     RLD      +AY  +I  LC + K+ EA  +V+ M +G     
Sbjct: 283 DSDNAMKFLAKMLNQGMRLDI-----TAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPD 337

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA---------------------- 175
            + F  +++   +  RM+ A  +   + E    PD+ A                      
Sbjct: 338 MMIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAISYFC 397

Query: 176 --------YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
                   Y  L+ A C + +      +  K+ E  L  D   Y + + G C+ G + +A
Sbjct: 398 TEKANDVMYTVLIDALCKEEDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDA 457

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           F L  +MV +G  +    Y  ++  L   G   +A
Sbjct: 458 FKLKTKMVQEGLELDLFAYTTLIYGLTSKGLMVEA 492



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/266 (19%), Positives = 101/266 (37%), Gaps = 44/266 (16%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           I  + LV  S   S  F  +P    ++ L N     + L+ V   +    + CC     T
Sbjct: 107 IRSACLVLESLRASYGFTCKPDIVSFNTLFNGFSKMKMLDEVFVYMGVMLK-CCSPNVVT 165

Query: 73  FN-----FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVD 127
           ++     F  + E  L++ S  C    + D  FP    +  LI   CK   ++  + + +
Sbjct: 166 YSTWIDMFCKSGELKLALKSFNC---MKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYE 222

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP---------------- 171
            M      L+ +T+  ++    +   M+ A G+   M E RV P                
Sbjct: 223 EMRRVRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQRG 282

Query: 172 -------------------DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
                              D+TAY  +++  C  G L   + +++ ME+  L  D   + 
Sbjct: 283 DSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMMIFT 342

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDG 238
            ++    ++GR++ A  +  ++++ G
Sbjct: 343 TMMNAYFKSGRMKAAVNMYHKLIERG 368



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y + I  LCK   + +A ++   M + G  L    +  ++  LT    M EA  +
Sbjct: 436 PDKFMYTSWIAGLCKQGNLVDAFKLKTKMVQEGLELDLFAYTTLIYGLTSKGLMVEARQV 495

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            + M    V PD   ++ L+ AY  +GN+T  S +L  M+   L 
Sbjct: 496 FDEMLRSGVCPDSAVFDLLIRAYEKEGNMTTASDLLLDMQTRGLA 540



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 58/131 (44%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P    Y T+I    +    D A++ +  M   G  L    +  I+S L    +++E
Sbjct: 262 DRVEPNSLVYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKE 321

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  ++E M++  + PD+  +  ++ AY   G + A   +  K+ E     D      ++ 
Sbjct: 322 ATEIVEDMEKGDLVPDMMIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMID 381

Query: 217 GACRAGRVEEA 227
           G  + G++ EA
Sbjct: 382 GIAKNGQLHEA 392


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 11/201 (5%)

Query: 75  FITNTENSLSVLSDLCRTLA-----------RLDKGFPRKSAYDTLIGRLCKLKKIDEAL 123
           F  N  N   +L  LCR L            R +   P   +Y+T+I   C+ K++++AL
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            + + M   G   S +T+  ++    +  +M+EA G ++ MK + +  DL  Y  L+  +
Sbjct: 198 ELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGF 257

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C  G L     +  ++ E      A TY+ L+ G C+ G+++EA  +   M++ G     
Sbjct: 258 CDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNV 317

Query: 244 STYAHVMGALLRLGYYAQAVK 264
            TY  ++  L  +G   +A++
Sbjct: 318 YTYTGLIDGLCGVGKTKEALQ 338



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC + K  EAL+ +++M E     +A+T++ I++ L +   + +A  +
Sbjct: 315 PNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEI 374

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM--EEEKLGADARTYDALVLGA 218
           +E+MK+ R  PD   YN LL   C KG+L   S +L  M  +      D  +Y+AL+ G 
Sbjct: 375 VELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGL 434

Query: 219 CRAGRVEEAFVLLRRMVD 236
           C+  R+ +A  +   +V+
Sbjct: 435 CKENRLHQALDIYDLLVE 452



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 89/203 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ L+  LC+  +  +A+ ++  M          +++ ++     GK +E+A  L   MK
Sbjct: 145 HNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMK 204

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               S  L  +  L+ A+C  G +    G LK+M+   L AD   Y +L+ G C  G ++
Sbjct: 205 GSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELD 264

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
               L   +++ G S    TY  ++    +LG   +A +       R ++ +   +  L 
Sbjct: 265 RGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLI 324

Query: 286 SKLIGLERFNEANFILKEMNKRD 308
             L G+ +  EA   L  M ++D
Sbjct: 325 DGLCGVGKTKEALQPLNLMIEKD 347



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 84/201 (41%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  LI   CK  K+DEA+  +  M   G     + +  ++        ++    L + + 
Sbjct: 215 WGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVL 274

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E   SP    YN L+  +C  G L   S + + M E  +  +  TY  L+ G C  G+ +
Sbjct: 275 ERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTK 334

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA   L  M++  +     TY  ++  L + G  A AV+ V +   R  + D   +  L 
Sbjct: 335 EALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILL 394

Query: 286 SKLIGLERFNEANFILKEMNK 306
             L      +EA+ +L  M K
Sbjct: 395 GGLCAKGDLDEASKLLYLMLK 415



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 35/200 (17%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRG--KRMEEA 157
           P   +Y+ LI  LCK  ++ +AL + D++ E  G G    T   + S L  G   +  E 
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481

Query: 158 W-------------------------GLMEVMK----EIRVS---PDLTAYNYLLTAYCF 185
           W                         G++ V K    ++RVS   P +  YN LL++ C 
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           +G+L     + ++M+ +    D  +++ ++ G+ +AG ++ A  LL  M   G S    T
Sbjct: 542 EGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFT 601

Query: 246 YAHVMGALLRLGYYAQAVKF 265
           Y+ ++   L+LGY  +A+ F
Sbjct: 602 YSKLINRFLKLGYLDEAISF 621



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 66/137 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI   CKL ++ EA  + + M E G   +  T+  ++  L    + +EA   
Sbjct: 280 PCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQP 339

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M E    P+   YN ++   C  G +     +++ M++ +   D  TY+ L+ G C 
Sbjct: 340 LNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCA 399

Query: 221 AGRVEEAFVLLRRMVDD 237
            G ++EA  LL  M+ D
Sbjct: 400 KGDLDEASKLLYLMLKD 416



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 56/120 (46%)

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           +++K   A  V+ +M + GF  +    + +L  L R     +A  L+  M+   + PD+ 
Sbjct: 119 QMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVF 178

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +YN ++  +C    L     +  +M+         T+  L+   C+AG+++EA   L+ M
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM 238


>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
          Length = 581

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 94/212 (44%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    Y TLI   C+   ++EA+++   M   G      T++ IL  L     M+E 
Sbjct: 278 QATPDNVTYTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEV 337

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M   +V  D    N L+ AYC +G++T+   V KKM E  L  +  TY AL+ G
Sbjct: 338 HRLLHEMDGRKVQADHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHG 397

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+A  ++ A     +MVD G S  YS ++ ++    +       +        R +  D
Sbjct: 398 FCKARELDGAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPD 457

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             ++ SL  +L      ++A  +  +M  + L
Sbjct: 458 KAVYRSLIRRLCRKGLVDQAQRVFDQMQSKGL 489



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 89/210 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A   L+  L + +    A RV D MA  G   +   ++ +L V  +     +A  +
Sbjct: 141 PDAHACTALLTALARARMTATARRVFDEMARAGLAATTHVYNAMLHVCLKAGDAAQAEAI 200

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    V+ D  +YN ++  YC KG          +M++E +  D  T+++ + G C+
Sbjct: 201 VTRMDAAGVTLDRFSYNTVIALYCRKGMGYEAMCARDRMDKEGIRPDTVTWNSSIHGLCK 260

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV+EA  L   MV    +    TY  ++    R G   +AVK         +      
Sbjct: 261 EGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVAT 320

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + ++  KL       E + +L EM+ R ++
Sbjct: 321 YNAILRKLCEDGNMKEVHRLLHEMDGRKVQ 350



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 73/172 (42%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++    K     +A  +V  M   G  L   +++ ++++  R     EA    + M 
Sbjct: 181 YNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGMGYEAMCARDRMD 240

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  + PD   +N  +   C +G +   + +  +M   +   D  TY  L+ G CRAG VE
Sbjct: 241 KEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCRAGNVE 300

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           EA  L  RM   G     +TY  ++  L   G   +  + +    GR ++ D
Sbjct: 301 EAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQAD 352



 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 6/161 (3%)

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-GVLKKMEEEKLG 205
           VL +  R  +A  + + M+   ++PD  A   LLTA   +  +TAT+  V  +M    L 
Sbjct: 117 VLAQSARPHDAVRVFDHMRARGLAPDAHACTALLTALA-RARMTATARRVFDEMARAGLA 175

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR--LGYYAQAV 263
           A    Y+A++    +AG   +A  ++ RM   G ++   +Y  V+    R  +GY A   
Sbjct: 176 ATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGMGYEAMCA 235

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +  M   G  I+ DT  + S    L    R  EA  +  EM
Sbjct: 236 RDRMDKEG--IRPDTVTWNSSIHGLCKEGRVKEAAQLFTEM 274



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 38/147 (25%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI   CK +++D A      M + GF                               
Sbjct: 391 YKALIHGFCKARELDGAKEAFFQMVDAGF------------------------------- 419

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
               SP+ + +++L+  +C K N  A   +  ++ +  L  D   Y +L+   CR G V+
Sbjct: 420 ----SPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRRLCRKGLVD 475

Query: 226 EAFVLLRRMVDD---GQSVLYSTYAHV 249
           +A  +  +M      G S++Y+T A+ 
Sbjct: 476 QAQRVFDQMQSKGLVGDSLVYATLAYT 502


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 40/211 (18%)

Query: 93  LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LDKGF            P   AY+ ++G LCK+++I +A ++ D M +     + +T
Sbjct: 170 LKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVT 229

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++    +   +EEA G  E MKE  V  +L  YN LL   C  G +     VL +ME
Sbjct: 230 YNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEME 289

Query: 201 ---------------EEKLGA-------------DARTYDALVLGACRAGRVEEAFVLLR 232
                          +   GA             D RTY  L+ G CR GR+E+A  +L 
Sbjct: 290 GSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLA 349

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           ++V++G +    +Y  ++ A  + G   +A+
Sbjct: 350 KLVENGVTPSKISYNILVNAYCQEGDVKKAI 380



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E +L+V +D+  +  R     P   AY   +     LK +D+   ++  M + G G S  
Sbjct: 139 EKTLAVFADVIDSGTR-----PDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVF 193

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
            ++ +L  L + +R+++A  L + M +  + P+   YN L+  YC  G +    G  ++M
Sbjct: 194 AYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERM 253

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +E+ +  +  TY++L+ G C +GRV++A  +L  M   G
Sbjct: 254 KEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSG 292



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 28/231 (12%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGF---GLSAITFHP------------------ 143
            Y++L+  LC   ++D+A  V+  M   GF   G  +  F                    
Sbjct: 264 TYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRI 323

Query: 144 -------ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
                  +L+ L R  R+E+A  ++  + E  V+P   +YN L+ AYC +G++       
Sbjct: 324 DERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTT 383

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           ++MEE  L  +  T++ ++   C  G V+ A   +RRMV+ G S    TY  ++    + 
Sbjct: 384 EQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQK 443

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           G++ +  +F+       IK +   +GSL + L    +  +A  +L +M  R
Sbjct: 444 GHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGR 494



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 10/255 (3%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           SG  P    S  +DD  N AG +   +     +++R      N       I   E  L+ 
Sbjct: 291 SGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAK 350

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L +   T        P K +Y+ L+   C+   + +A+   + M E G   + ITF+ ++
Sbjct: 351 LVENGVT--------PSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVI 402

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           S       ++ A   +  M E  VSP +  YN L+  Y  KG+       L +M++  + 
Sbjct: 403 SKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIK 462

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  +Y +L+   C+  ++ +A ++L  M+  G S     Y  ++ A   L     A +F
Sbjct: 463 PNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRF 522

Query: 266 V--MVCGGRDIKLDT 278
              M+  G D  L T
Sbjct: 523 FDEMIQSGIDATLVT 537



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 38/245 (15%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C L K+ +A R  D M + G   + +T++ +++ L R  R+++A  L
Sbjct: 498 PNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDL 557

Query: 161 MEVMKEIRVSPDLTAYNYLLTAY----------------------------------CFK 186
              M     +PD+  YN L++ Y                                  C K
Sbjct: 558 FLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRK 617

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             +     + ++M +  L  D   Y+ ++      G V +A  L ++MVD G      TY
Sbjct: 618 EGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTY 677

Query: 247 AHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             ++ A LR    ++    V  M   G   K+DT  +  L   L  L+ FN A F  +EM
Sbjct: 678 NSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDT--YNILIKGLCDLKDFNGAYFWYREM 735

Query: 305 NKRDL 309
            +R L
Sbjct: 736 VERGL 740



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 1/193 (0%)

Query: 113 LCKLKK-IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
           LC + K +DEA  +   M + GF  S  + + +L  L   +  E+   +   + +    P
Sbjct: 96  LCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRP 155

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           D  AY   + A     +L     ++K M ++ +G     Y+ ++ G C+  R+++A  L 
Sbjct: 156 DAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLF 215

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
             M+         TY  ++    ++G   +A+ F      ++++ +   + SL + L G 
Sbjct: 216 DEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGS 275

Query: 292 ERFNEANFILKEM 304
            R ++A  +L EM
Sbjct: 276 GRVDDAREVLLEM 288



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 26/242 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   Y+ LVNA   E D++       +           TFN         +V+S  C T
Sbjct: 358 PSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFN---------TVISKFCET 408

Query: 93  ---------LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
                    + R+ +KG  P    Y++LI    +          +D M + G   + I++
Sbjct: 409 GEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISY 468

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             +++ L + +++ +A  ++  M    VSP+   YN L+ A C    L        +M +
Sbjct: 469 GSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQ 528

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             + A   TY+ L+ G  R GRV++A  L  +M   G +    TY  ++        YA+
Sbjct: 529 SGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISG------YAK 582

Query: 262 AV 263
           +V
Sbjct: 583 SV 584


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 2/241 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTL--ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN +  T   + ++ D  +      + K  P    Y TL+  LCK  +IDEA+ ++D M
Sbjct: 171 TFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEM 230

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   S +TF+ +++ L +   +     L++ M     +P+   YN L+   C KG L
Sbjct: 231 QIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKL 290

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +L +M   K   +  TY  ++ G  + GR  +   +L  M + G  V    Y+ +
Sbjct: 291 EKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSAL 350

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L + G   +A++       ++ +L+T ++ ++   L    + +EA  +L EM     
Sbjct: 351 ISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRC 410

Query: 310 K 310
           K
Sbjct: 411 K 411



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 98/211 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ +I  +CK+  +D+A+++   M          T+  ++  L +  R++EA  L
Sbjct: 167 PNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSL 226

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+     P    +N L+   C KG+L   + ++  M  +    +  TY+ L+ G C 
Sbjct: 227 LDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCL 286

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E+A  LL RMV         TY  ++  L++ G      + + +   R   ++  +
Sbjct: 287 KGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYV 346

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           + +L S L    +  EA  + KEM  ++ ++
Sbjct: 347 YSALISGLFKEGKSQEAMQLFKEMTVKECEL 377



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 11/259 (4%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           L+  +V + R    S   PD  T   Y  L++       ++    LL++   D CF +  
Sbjct: 184 LVDDAVQMFRDMPVSKCQPDVYT---YCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPV 240

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVV 126
           TFN +    N L    DL R    +D  F     P +  Y+TLI  LC   K+++A+ ++
Sbjct: 241 TFNVLI---NGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLL 297

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           D M       + +T+  I++ L +  R  +   ++ +M+E     +   Y+ L++    +
Sbjct: 298 DRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKE 357

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G       + K+M  ++   +   Y A++ G CR G+ +EA  +L  M ++       TY
Sbjct: 358 GKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTY 417

Query: 247 AHVMGALLRLGYYAQAVKF 265
           + +M      G   +A++ 
Sbjct: 418 SSLMKGFFEAGNGHKAIEM 436



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 120/294 (40%), Gaps = 8/294 (2%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           LV   F K G  P+E T   Y+ L++    +  LE    LL++     C     T+  I 
Sbjct: 261 LVDNMFLK-GCAPNEVT---YNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTII 316

Query: 78  NTENSLSVLSDLCRTLARLD-KGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           N         D  R LA ++ +G+   +  Y  LI  L K  K  EA+++   M      
Sbjct: 317 NGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECE 376

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           L+ I +  ++  L R  + +EA  ++  M   R  P+   Y+ L+  +   GN      +
Sbjct: 377 LNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEM 436

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            K M +     +   Y  L+ G C+ G+V+EA ++  +M+  G       Y  ++  L  
Sbjct: 437 WKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSN 496

Query: 256 LGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            G    A++    M+C   D + D   +  L + L      + A  +L  M  R
Sbjct: 497 AGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDR 550



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 93/215 (43%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++D  FP    ++ LI  LCK   +    ++VD M   G   + +T++ ++  L    ++
Sbjct: 231 QIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKL 290

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A  L++ M   +  P++  Y  ++     +G     + VL  MEE     +   Y AL
Sbjct: 291 EKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSAL 350

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G  + G+ +EA  L + M      +    Y+ V+  L R G   +A++ +        
Sbjct: 351 ISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRC 410

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           K +   + SL          ++A  + K+M K + 
Sbjct: 411 KPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNF 445



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 8/151 (5%)

Query: 140 TFHPILSVLTRGK---RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           +F+ +L+V+ +     R  E +  +   K + +SP++  +N ++   C  G +     + 
Sbjct: 133 SFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMF 192

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           + M   K   D  TY  L+ G C+A R++EA  LL  M  DG      T+  ++  L + 
Sbjct: 193 RDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKK 252

Query: 257 GYYAQAVK-----FVMVCGGRDIKLDTELFG 282
           G  A+  K     F+  C   ++  +T + G
Sbjct: 253 GDLARVAKLVDNMFLKGCAPNEVTYNTLIHG 283



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 6/179 (3%)

Query: 35  SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLA 94
           SA  D L      +  LE +  + N R +   +  ++         N    + ++ + +A
Sbjct: 383 SAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAI-EMWKDMA 441

Query: 95  RLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           +    F +    Y  LI  LCK  K+ EA+ V   M   G     + +  +++ L+    
Sbjct: 442 K--HNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGL 499

Query: 154 MEEAWGLMEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           +E+A  L   M  +E    PD+  YN LL A C + +++    +L  M +     D  T
Sbjct: 500 VEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVT 558



 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 7/161 (4%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           + +L VLS++     +     P    Y +L+    +     +A+ +   MA+  F  + +
Sbjct: 396 DEALEVLSEMTNNRCK-----PNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEV 450

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
            +  ++  L +  +++EA  +   M      PD+ AY  ++      G +     +  +M
Sbjct: 451 CYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEM 510

Query: 200 --EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             +E     D  TY+ L+   C+   +  A  LL  M+D G
Sbjct: 511 LCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRG 551


>gi|115451563|ref|NP_001049382.1| Os03g0216300 [Oryza sativa Japonica Group]
 gi|108706849|gb|ABF94644.1| expressed protein [Oryza sativa Japonica Group]
 gi|113547853|dbj|BAF11296.1| Os03g0216300 [Oryza sativa Japonica Group]
 gi|215734993|dbj|BAG95715.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 533

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 2/268 (0%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-FITNTENSLSVL 86
           + P  PT+  +  L+++          R       +     TA+ F   + ++ ++L  +
Sbjct: 76  SLPFAPTAPLFTTLISSLAASGRPLAARAAFASLLKSGVPPTASAFTALLRSSSDALDFV 135

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
             + R +  L    P  + Y+ +I  LC  + + EAL  +D M E G   +A +F  IL 
Sbjct: 136 DSVFRAMEALGCS-PDAAVYNWVISMLCDFQLVQEALGFLDHMLENGPRPTARSFTAILR 194

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                 R  +A  L++ M +    PD+ +Y  L+   C  G  +    +L + E +    
Sbjct: 195 AYCEQGRFFDAGRLVDTMIQNGCPPDVVSYTVLIEGLCRVGEFSTVEMILGESESQGWMP 254

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            A TY+  + G CR G ++EAF  +  M   G SV   T   +   L R   +++AV  +
Sbjct: 255 TAVTYNIYMSGLCRMGFLDEAFRQVDIMRGRGLSVTAETVHILFDCLCRNAMFSEAVCLL 314

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERF 294
                    +D   + +L S+L  ++ F
Sbjct: 315 EHSEELGWDVDVFCYNTLMSRLCDVDDF 342



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+  +  LC++  +DEA R VDIM   G  ++A T H +   L R     EA  L
Sbjct: 254 PTAVTYNIYMSGLCRMGFLDEAFRQVDIMRGRGLSVTAETVHILFDCLCRNAMFSEAVCL 313

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E  +E+    D+  YN L++  C   +      +L  + ++ +G D  ++   +   CR
Sbjct: 314 LEHSEELGWDVDVFCYNTLMSRLCDVDDFARVLKLLVDLLKKGIGPDKFSFTIAIRSLCR 373

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           AG++  A  L+         V ++T  H
Sbjct: 374 AGKLRLAKCLIENKGIKYDVVAFNTLIH 401


>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 477

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 4/262 (1%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V   F KS  F   P    Y+ ++++    +  + + ++  +   D       T+N +  
Sbjct: 206 VVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFSPDVLTYNIVMF 265

Query: 79  TENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
               L     L R L  + K GF P    Y+ L+  L    K   AL ++  M E G   
Sbjct: 266 ANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVEP 325

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             I F  ++  L+R  ++E     M+ M ++  +PD+  Y  ++T Y   G L     + 
Sbjct: 326 GVIHFTTLVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMF 385

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           K+M E+    +  TY++++ G C AG+ +EA  LL+ M   G +  +  Y+ ++  L   
Sbjct: 386 KEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLVNNLRNA 445

Query: 257 GYYAQAVKFV--MVCGGRDIKL 276
           G   +A + V  MV  G  + L
Sbjct: 446 GKVLEAHEIVKDMVEKGHYVHL 467



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 1/210 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ GF P    Y+ ++    +L K D   R++D M + GF     T++ +L  L  G + 
Sbjct: 249 LEDGFSPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKP 308

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
             A  L+  M+E+ V P +  +  L+      G L A    + +M +     D   Y  +
Sbjct: 309 LAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVM 368

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    G +E+A  + + M + GQ     TY  ++      G + +A   +     R  
Sbjct: 369 ITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGC 428

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +  ++ +L + L    +  EA+ I+K+M
Sbjct: 429 NPNFVVYSTLVNNLRNAGKVLEAHEIVKDM 458


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 99/215 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P   +Y +L+   C   K++E+ R+ + M + G   + + F+ ++ +L +  ++ EA  
Sbjct: 94  IPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKK 153

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+EV  +  +  DL  YN L+  +C  G+L++   +   M  +    +  +Y  L+ G C
Sbjct: 154 LLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYC 213

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +  +VEEA  L   M   G+     TY+ ++  LL+ G    A K   V     I +D+ 
Sbjct: 214 KIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSC 273

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
           ++      L       EA  +  E+   + K+ F+
Sbjct: 274 IYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFE 308



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 66/134 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI   CK+ K++EA+ + + M + G   +  T+  +L+ L +  ++ +A  L  VM
Sbjct: 204 SYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVM 263

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K   +S D   Y   L   C  G L     +  +++      D  +Y  L+ G C+AG+V
Sbjct: 264 KASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKV 323

Query: 225 EEAFVLLRRMVDDG 238
           E A+   +++  +G
Sbjct: 324 EIAWEFFKQLSQEG 337



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 1/216 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P    ++ LI  LCK  K+ EA +++++  + G  L  +T++ ++    +   +
Sbjct: 124 VDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDL 183

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
             A  L   M       +  +Y  L+  YC    +     +  +M +     + +TY  L
Sbjct: 184 SSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTL 243

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G  + G+V +A  L   M   G SV    Y   +  L + G   +A++        + 
Sbjct: 244 LTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNF 303

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           KLD E +  L   L    +   A    K++++  L+
Sbjct: 304 KLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQ 339



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 89/204 (43%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y++LI   CK+  +  A ++   M   G   + I++  +++   +  ++EEA  L   M
Sbjct: 169 TYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEM 228

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            ++   P++  Y+ LLT     G +   + +   M+   +  D+  Y   + G C+ G +
Sbjct: 229 PQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVL 288

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            EA  L   +      + + +Y+ ++  L + G    A +F        ++ +      +
Sbjct: 289 FEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIM 348

Query: 285 GSKLIGLERFNEANFILKEMNKRD 308
                 +E+ ++AN + ++M K +
Sbjct: 349 IHGFCRVEQVDKANILFEKMEKME 372



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 7/134 (5%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y   +  LCK   + EA+ + + +    F L   ++  ++  L +  ++E AW   + + 
Sbjct: 275 YVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLS 334

Query: 166 EIRVSPDLTAYNYLLTAYCF-----KGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  + P++   N ++  +C      K N+      ++KMEE     D  TY+ L+ G C 
Sbjct: 335 QEGLQPNVVTCNIMIHGFCRVEQVDKANILFEK--MEKMEENGCTPDIITYNTLLRGFCE 392

Query: 221 AGRVEEAFVLLRRM 234
           + ++EE   LL +M
Sbjct: 393 SNKLEEVVNLLHKM 406



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 18/184 (9%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + L   LC L ++ E L  +  +   G+    +T++ ++  L R  R+      
Sbjct: 8   PDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRIS----- 62

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                         A   ++   C  G+      + ++M+ + +  +  +Y +LV G C 
Sbjct: 63  -------------VATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCC 109

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG++EE+  L   MVD G       +  ++  L + G   +A K + V   R I LD   
Sbjct: 110 AGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVT 169

Query: 281 FGSL 284
           + SL
Sbjct: 170 YNSL 173


>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 938

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 92/202 (45%)

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           +  Y+TLI  LCKL    +A  V++ M   GF    +TF+ ++     G  + +A     
Sbjct: 678 RQVYNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYS 737

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
           +M E  +SP++  YN ++      G +      L +M+   +  D  TY+AL+ G  + G
Sbjct: 738 MMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIG 797

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
             +E+  +   M+ DG     STY  ++    ++G   QA + +   G R +  +T  + 
Sbjct: 798 NKKESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKMLQATELMKEMGKRRVSPNTSTYC 857

Query: 283 SLGSKLIGLERFNEANFILKEM 304
           ++ S L  L    E  +  K M
Sbjct: 858 TMISGLCKLCTHPEVEWNKKAM 879



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 84  SVLSDLCRTLARLDKG-----------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           S+++ LC+    ++ G           +P    Y TL+  L K K    AL +   M   
Sbjct: 264 SIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVR 323

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G  +  + +  +++ L +   + EA    +++ E    P++  Y  L+   C  G+L++ 
Sbjct: 324 GIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSA 383

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             ++ +M E+ +  +  TY +++ G  + G +EEA  L+R+M D        TY  V+  
Sbjct: 384 EFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQNVVPNGFTYGTVIDG 443

Query: 253 LLRLG 257
           L + G
Sbjct: 444 LFKAG 448



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 1/207 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P    + ++I RLCK  K+ E   ++  M E G   + +T+  ++  L + K    A
Sbjct: 254 GFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYRHA 313

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L   M    +  DL  Y  L+      G+L       K + E+    +  TY ALV G
Sbjct: 314 LALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALVDG 373

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+AG +  A  ++ +M++        TY+ ++   ++ G   +AV  +     +++  +
Sbjct: 374 LCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQNVVPN 433

Query: 278 TELFGSLGSKLIGLERFNEANFILKEM 304
              +G++   L    +   A+ + KEM
Sbjct: 434 GFTYGTVIDGLFKAGKQEVASEMSKEM 460



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 31/225 (13%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A + LI  LCK+ ++  A   + ++      +  +T++ ++S L      +EA+  
Sbjct: 127 PDVFALNVLIHSLCKVGQLSFA---ISLLRNRVISVDTVTYNTVISGLCEHGLADEAYQF 183

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL---------------- 204
           +  M +I + PD  ++N L+  +C  GN      ++ ++ E  L                
Sbjct: 184 LSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALVDEISELNLITHTILISSYYNLHAI 243

Query: 205 ------------GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
                         D  T+ +++   C+ G+V E  +LLR M + G    + TY  ++ +
Sbjct: 244 EEAYRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDS 303

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           L +   Y  A+        R I +D  ++  L + L       EA
Sbjct: 304 LFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREA 348



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 5/216 (2%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P    Y  L+  LCK   +  A  ++  M E     + +T+  +++   +   +EE
Sbjct: 358 DNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEE 417

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY--DAL 214
           A  LM  M++  V P+   Y  ++      G     S + K+M    +G +   Y  DAL
Sbjct: 418 AVSLMRKMEDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEM--RLIGVEENNYILDAL 475

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           V    R GR++E   L++ MV  G ++ +  Y  ++    + G    A+ +      +++
Sbjct: 476 VNHLKRIGRIKEVKGLVKDMVSKGVTLDHINYTSLIDVFFKGGDEEAALSWAEEMQEKEM 535

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             D   +  L S L+   +   A++  K M ++ ++
Sbjct: 536 PWDVVSYNVLISGLLKFGKVG-ADWAYKGMREKGIE 570



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 2/235 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN + N++        + +   ++   G  P     + ++G LC+  K+ EA+ ++D M
Sbjct: 575 TFNIMMNSQRKQGDFEGILKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQM 634

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
                  +  T+   L + ++ KR +  +   E +    +      YN L+   C  G  
Sbjct: 635 MFMEIHPNLTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMT 694

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
              + V++ ME      D  T++AL+ G      V +A      M++ G S   +TY  +
Sbjct: 695 RKAAMVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTI 754

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +  L   G   +  K++     R ++ D   + +L S    +    E+  I  EM
Sbjct: 755 IRGLSDAGLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEM 809



 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           VSPD+ A N L+ + C  G L+    +L+      +  D  TY+ ++ G C  G  +EA+
Sbjct: 125 VSPDVFALNVLIHSLCKVGQLSFAISLLRN---RVISVDTVTYNTVISGLCEHGLADEAY 181

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             L  MV  G      ++  ++    ++G +A+A   V
Sbjct: 182 QFLSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALV 219



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 3/157 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +  LI     L  I+EA R    M   GF    +TF  I++ L +  ++ E   L+  M+
Sbjct: 230 HTILISSYYNLHAIEEAYR---DMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREME 286

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E+ V P+   Y  L+ +     +      +  +M    +  D   Y  L+ G  +AG + 
Sbjct: 287 EMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLR 346

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           EA    + +++D +     TY  ++  L + G  + A
Sbjct: 347 EAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSA 383



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 4/170 (2%)

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT-ATSGVLKKM 199
           FH +  +     R+  A   +  M    V PDL  +N L+  +   G +    S V  KM
Sbjct: 61  FHTLFRLYLSCGRLYGAARTLSAMCTFGVVPDLCLWNSLIHQFNVNGLVHDQVSLVYSKM 120

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
               +  D    + L+   C+ G++  A  LLR  V    +V Y+T   V+  L   G  
Sbjct: 121 IACGVSPDVFALNVLIHSLCKVGQLSFAISLLRNRVISVDTVTYNT---VISGLCEHGLA 177

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +A +F+       I  DT  F +L      +  F  A  ++ E+++ +L
Sbjct: 178 DEAYQFLSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALVDEISELNL 227


>gi|108706850|gb|ABF94645.1| expressed protein [Oryza sativa Japonica Group]
          Length = 476

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 2/268 (0%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-FITNTENSLSVL 86
           + P  PT+  +  L+++          R       +     TA+ F   + ++ ++L  +
Sbjct: 19  SLPFAPTAPLFTTLISSLAASGRPLAARAAFASLLKSGVPPTASAFTALLRSSSDALDFV 78

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
             + R +  L    P  + Y+ +I  LC  + + EAL  +D M E G   +A +F  IL 
Sbjct: 79  DSVFRAMEALGCS-PDAAVYNWVISMLCDFQLVQEALGFLDHMLENGPRPTARSFTAILR 137

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                 R  +A  L++ M +    PD+ +Y  L+   C  G  +    +L + E +    
Sbjct: 138 AYCEQGRFFDAGRLVDTMIQNGCPPDVVSYTVLIEGLCRVGEFSTVEMILGESESQGWMP 197

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            A TY+  + G CR G ++EAF  +  M   G SV   T   +   L R   +++AV  +
Sbjct: 198 TAVTYNIYMSGLCRMGFLDEAFRQVDIMRGRGLSVTAETVHILFDCLCRNAMFSEAVCLL 257

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERF 294
                    +D   + +L S+L  ++ F
Sbjct: 258 EHSEELGWDVDVFCYNTLMSRLCDVDDF 285



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+  +  LC++  +DEA R VDIM   G  ++A T H +   L R     EA  L
Sbjct: 197 PTAVTYNIYMSGLCRMGFLDEAFRQVDIMRGRGLSVTAETVHILFDCLCRNAMFSEAVCL 256

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E  +E+    D+  YN L++  C   +      +L  + ++ +G D  ++   +   CR
Sbjct: 257 LEHSEELGWDVDVFCYNTLMSRLCDVDDFARVLKLLVDLLKKGIGPDKFSFTIAIRSLCR 316

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           AG++  A  L+         V ++T  H
Sbjct: 317 AGKLRLAKCLIENKGIKYDVVAFNTLIH 344


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D A  + D M   G   + +T
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVT 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 310 MKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSV 369

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++        + + +LKEM++
Sbjct: 370 DAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHR 415



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK   + +A  ++D M+  G      T+  ++    +   ++ A+ 
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE 338

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M +  +  D  AY  L++  C +G       +L++M    L  D  TY  ++   C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFC 398

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + G V +   LL+ M  DG +    TY  +M  
Sbjct: 399 KKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431



 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 49/116 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L  L + K  +  WG  E + E      L  +N L+  +C  G++     V   +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  L     +Y+ L+ G  R G ++E F L   M+  G      TY+ ++  L +
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 118/257 (45%), Gaps = 5/257 (1%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           L  ++  V +    +G  PD+ T   Y+ L++  G  R  +    +L +   + C  +  
Sbjct: 286 LYEEAAGVLKEMKLAGFSPDKVT---YNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIV 342

Query: 72  TFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N + +      +L D      ++ +KG  P    Y TL+    K  K   A+++ + M
Sbjct: 343 TYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEM 402

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   +  TF+ ++ +     +  E   + E +K  + SPD+  +N LL+ +   G  
Sbjct: 403 RNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMD 462

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
           +  SGV K+M+      +  T++ L+    R G  ++A  + +RM++ G +   S+Y  V
Sbjct: 463 SEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAV 522

Query: 250 MGALLRLGYYAQAVKFV 266
           + AL R G + Q+ K +
Sbjct: 523 LAALARGGLWKQSEKVL 539



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 84  SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           S+L +LC+    +D       AY ++I       +  EA+ V   M E G   + IT++ 
Sbjct: 186 SLLHNLCKDGFDVDV-----YAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNV 240

Query: 144 ILSVLTR-GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL-TATSGVLKKMEE 201
           IL+V  + G    +  GL++ MK   ++PD   YN L++  C +GNL    +GVLK+M+ 
Sbjct: 241 ILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISC-CRRGNLYEEAAGVLKEMKL 299

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
                D  TY+AL+    ++ R +EA  +L+ M  +G      TY  ++ A  R G    
Sbjct: 300 AGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLED 359

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           A++       + IK D   + +L S      +   A  I +EM     K
Sbjct: 360 ALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCK 408



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 90/208 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           PR     TL+    K   + E  R    + + GF     T + ++S+  R + + +A  +
Sbjct: 584 PRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEI 643

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MK    +P LT YN L+  Y    N   +  +L+++  + +  D  +Y+ ++   CR
Sbjct: 644 LDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCR 703

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+ +A  +L  M + G +    TY   + +      + +A+  V        K +   
Sbjct: 704 NGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQST 763

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + S+      L R +EA+  +  + K D
Sbjct: 764 YNSIVDWYCKLNRRDEASMFVNNLRKLD 791



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 3/176 (1%)

Query: 66  CFNTANTFNFITNTENSLSV-LSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEA 122
           C  T  T+N I N    + +  + +   + R+      P    Y+TLI    +    +EA
Sbjct: 231 CKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEA 290

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
             V+  M   GF    +T++ +L V  + +R +EA  +++ M+     P +  YN L++A
Sbjct: 291 AGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISA 350

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           Y   G L     +  +M E+ +  D  TY  L+ G  +AG+ + A  +   M ++G
Sbjct: 351 YARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEG 406



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 60/136 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI       K  E ++V + +         +T++ +LSV  +     E  G+
Sbjct: 409 PNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGV 468

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + MK     P+   +N L+++Y   G+      V K+M E  +  D  +Y+A++    R
Sbjct: 469 FKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALAR 528

Query: 221 AGRVEEAFVLLRRMVD 236
            G  +++  +L  M D
Sbjct: 529 GGLWKQSEKVLAEMKD 544



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P +  ++TLI    +    D+A+ V   M E G      +++ +L+ L RG   +++
Sbjct: 476 GFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQS 535

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAY 183
             ++  MK+ R  P+   Y  LL AY
Sbjct: 536 EKVLAEMKDGRCKPNELTYCSLLHAY 561



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 5/180 (2%)

Query: 49  RDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF---PRKSA 105
           +D   V+     R   C  N   TFN +     +    +++ +    + K F   P    
Sbjct: 391 KDKAAVQIFEEMRNEGCKPNIC-TFNALIKMHGNRGKFTEMMKVFEDI-KTFQCSPDIVT 448

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++TL+    +     E   V   M   GF     TF+ ++S  +R    ++A  + + M 
Sbjct: 449 WNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRML 508

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  V+PDL++YN +L A    G    +  VL +M++ +   +  TY +L+        +E
Sbjct: 509 EAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIE 568



 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 4/150 (2%)

Query: 117 KKIDEALRVVDIM---AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           KK D ALRV + +    E    L+      I+S+L +G R+  A  L+  + +     D+
Sbjct: 141 KKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDV 200

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV-LLR 232
            AY  ++TA+   G       V KKMEE        TY+ ++    + G      V L+ 
Sbjct: 201 YAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVD 260

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           RM   G +    TY  ++    R   Y +A
Sbjct: 261 RMKSAGIAPDSYTYNTLISCCRRGNLYEEA 290


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 89/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI   CK   + EA  V+  M E G   + +T+  +++  +    + EA  L
Sbjct: 330 PNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKL 389

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +VM      PD+ +YN L+  YC    +     +  +M  + L  D  +Y+ L+ G C+
Sbjct: 390 FDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQ 449

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+ EA  L + M+ +G      TY+ ++    + GY A+A +         +K +  +
Sbjct: 450 LGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVM 509

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L   +       EA  +  E+
Sbjct: 510 YNILIDAMCKSRNLKEARKLFSEL 533



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 90/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK ++++EAL +   M   G   +  T++ ++  L    R  EA  +
Sbjct: 260 PDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAM 319

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M  + + P++  ++ L+  +C +GN+    GVLK M E  +  +  TY +L+ G   
Sbjct: 320 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 379

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V EA  L   M+  G      +Y  ++    +     +A +       + +  D   
Sbjct: 380 QAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVS 439

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L   L  L R  EA+ + K M
Sbjct: 440 YNTLIDGLCQLGRLREAHDLFKNM 463



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 87/209 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK+ +   A  +   M E G     +T+  I+  L + +R+ EA  +
Sbjct: 225 PDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDI 284

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK   +SP++  YN L+   C        S +L +M    +  +  T+  L+   C+
Sbjct: 285 FSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCK 344

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G V EA  +L+ M + G      TY+ +M          +A K   V   +  K D   
Sbjct: 345 EGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFS 404

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L +     +R  EA  +  EM  + L
Sbjct: 405 YNILINGYCKAKRIGEAKQLFNEMIHQGL 433



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 107/250 (42%), Gaps = 5/250 (2%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V ++ T+ G    EP    Y  L+N    + ++   R L +      C     ++N + N
Sbjct: 354 VLKTMTEMGV---EPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILIN 410

Query: 79  TENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
                  + +  +    +  +G  P   +Y+TLI  LC+L ++ EA  +   M   G   
Sbjct: 411 GYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLP 470

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
              T+  +L    +   + +A+ L   M+   + P++  YN L+ A C   NL     + 
Sbjct: 471 DLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLF 530

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            ++  + L  + + Y  ++ G C+ G ++EA    R M +DG      +Y  ++   L+ 
Sbjct: 531 SELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQH 590

Query: 257 GYYAQAVKFV 266
              ++AV+ +
Sbjct: 591 KDESRAVQLI 600



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 47  HERDLETVR----------YLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL 96
           H+ D  + R          ++L+++ R C        + I    +    +  L + +  L
Sbjct: 92  HQNDASSFRNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQM-EL 150

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
               P       LI    +L+++D    V+  + + G  L+ +TF+ +++ L +  +  +
Sbjct: 151 AGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQ 210

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L + M      PD+  Y  ++   C  G   A +G+ +KM E     D  TY  ++ 
Sbjct: 211 AVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIID 270

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             C+  RV EA  +   M   G S    TY  ++  L     + +A
Sbjct: 271 SLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREA 316



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++TLI  LCK+ K  +A+ + D M   G+     T+  I++ L +      A GL   M 
Sbjct: 195 FNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMG 254

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E    PD+  Y+ ++ + C    +     +   M+ + +  +  TY++L+ G C   R  
Sbjct: 255 EAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWR 314

Query: 226 EAFVLLRRMV 235
           EA  +L  M+
Sbjct: 315 EASAMLNEMM 324



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/231 (19%), Positives = 93/231 (40%), Gaps = 6/231 (2%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKS-----AYDTLIGRLCKLKKIDEA-LRVVDIMAEGG 133
           +N  S   ++   LA  +    RK       ++ L+  + K++   +A + +   M   G
Sbjct: 93  QNDASSFRNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAG 152

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
                 T H +++   + +R++  + ++  + ++ +   +  +N L+   C  G      
Sbjct: 153 LSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAV 212

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            +   M       D  TY  ++ G C+ G    A  L R+M + G      TY+ ++ +L
Sbjct: 213 ELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSL 272

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +     +A+        + I  +   + SL   L    R+ EA+ +L EM
Sbjct: 273 CKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 323



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 1/195 (0%)

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA-WGLMEVMKEIRVSPDLT 174
            + ID+AL   + M         I F+ +LS + + +   +A   L + M+   +SPD  
Sbjct: 99  FRNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTY 158

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             + L+  +     +     VL K+ +  L     T++ L+ G C+ G+  +A  L   M
Sbjct: 159 TLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDM 218

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           V  G      TY  ++  L ++G    A       G    + D   + ++   L    R 
Sbjct: 219 VARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRV 278

Query: 295 NEANFILKEMNKRDL 309
           NEA  I   M  + +
Sbjct: 279 NEALDIFSYMKAKGI 293


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A ++ D M E G   +++T
Sbjct: 190 LGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVT 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +   ++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 250 FTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMS 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              L  D  TY  L+ G C+ G ++ AF   + M+ +   +    Y  ++  L + G   
Sbjct: 310 MXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSV 369

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++        + + +LKEM +
Sbjct: 370 DAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQR 415



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+    +L  +DE  R+   M   G      T+  +++ L +  +M++A  L
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKL 234

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  + P+   +  L+  +C  G +     + K+M  + L  D  TY+AL+ G C+
Sbjct: 235 FDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCK 294

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A +   +    +I+LD   
Sbjct: 295 KGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVA 354

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLK 384



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 68/153 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+ LI  LCK   + +A  ++D M+  G     IT+  ++    +   ++ A+ 
Sbjct: 279 LPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             ++M +  +  D  AY  L++  C +G       +L++M    L  D RTY  ++   C
Sbjct: 339 HRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFC 398

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + G V +   LL+ M  DG      TY  +M  
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 2/160 (1%)

Query: 98  KGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           KG  R   Y    LI    +L  + +A+    +  E  F +   T   +L  L + K  +
Sbjct: 65  KGTQRSDIYVFSGLITAYLELGFLRDAIDCYRLTREHKFCVPFDTCRKVLEHLMKLKYFK 124

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
             WG  E + E      L  +N L+  +C +G++     V   + +  L     +Y+ L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G  R G ++E F L   M   G      TY+ ++  L +
Sbjct: 185 NGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCK 224



 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 3/140 (2%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           ++  L KLK         + + E G+  S   F+ ++    +   +  A  + + + +  
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWG 172

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + P + +YN L+  Y   G+L     +   M    +  D  TY  L+ G C+  ++++A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDAN 232

Query: 229 VLLRRMVDDG---QSVLYST 245
            L   M++ G    SV ++T
Sbjct: 233 KLFDEMLEKGLVPNSVTFTT 252


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L   + ++ +M 
Sbjct: 250 FTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMV 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 310 MKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSV 369

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++        + + +LKEM +
Sbjct: 370 DAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQR 415



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 66/153 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK   + +A  ++D M   G     IT+  ++    +   ++ A+ 
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M +  +  D  AY  L++  C +G       +L++M    L  D  TY  ++   C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFC 398

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + G V +   LL+ M  +G      TY  +M  
Sbjct: 399 KKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 49/116 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L  L + K  +  WG  E + E      L  +N L+  +C  G++     V   +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  L     +Y+ L+ G  R G ++E F L   M+  G      TY+ ++  L +
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCK 224



 Score = 37.4 bits (85), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 60/149 (40%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 94  CYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 153

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXY 213

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G C+  ++++A  L   M+  G
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKG 242


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 5/239 (2%)

Query: 33  PTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           P+ A Y+ L++     G   ++  V  LL +        TA TF  + N     S  +  
Sbjct: 224 PSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAA 283

Query: 90  CRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            R    + +     S   Y++LI  LC   K++E +++++ M + G   + ITF  +L  
Sbjct: 284 VRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKG 343

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             +   M +A   ++ M E  V PD+  YN L+  Y   G +     V + M ++ +  +
Sbjct: 344 FCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPN 403

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             TY+ L+ G  R+G    A  LL  M + G      TY  ++GAL   G   +AVK +
Sbjct: 404 VTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLL 462



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 3/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR---GKRMEEA 157
           P    ++T+I  LC++ ++ +A  V   +   G   S  T++ ++    +      M   
Sbjct: 189 PDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L++ M E  +SP    +  L+  YC   N  A   V ++M+++ + A   TY++L+ G
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISG 308

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  G+VEE   L+  M D G S    T+  V+    + G  A A  ++     R+++ D
Sbjct: 309 LCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPD 368

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             ++  L      L +  +A  + + M K+ +
Sbjct: 369 VVIYNILIDVYRRLGKMEDAMAVKEAMAKKGI 400



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI   CK      A+RV + M + G   S +T++ ++S L    ++EE   L
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME M+++ +SP+   +  +L  +C KG +   +  +  M E  +  D   Y+ L+    R
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRR 381

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E+A  +   M   G S   +TY  ++    R G +  A   +     + I+ D   
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L       +A  +L EM++  L+
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLE 471



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 84  SVLSDLCRTLARLD-----------KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           ++L D+ R L +++           KG  P  + Y+ LI    +      A  ++D M E
Sbjct: 373 NILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE 432

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T++ ++  L     + +A  L++ M E+ + P+   YN ++  +C KGN+ +
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKS 492

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +  +ME+ +  A+  TY+  +   C+ G+++EA  LL  M+D        TY  +  
Sbjct: 493 AYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKE 552

Query: 252 ALLRLGY 258
            ++  GY
Sbjct: 553 GMMEKGY 559



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 3/171 (1%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S  + + +L+ L   KR++ A          RVSPD+  +N +++  C  G L     V 
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214

Query: 197 KKMEEEKLGADARTYDALVLGACR---AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           K ++   L     TY++L+ G C+   AG +    +LL+ MV+ G S    T+  ++   
Sbjct: 215 KDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGY 274

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +    A AV+       + I      + SL S L    +  E   +++EM
Sbjct: 275 CKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM 325


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 108/253 (42%), Gaps = 12/253 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
           EP    Y  L++      +++    + +   R  C     +++ + N        + ++ 
Sbjct: 316 EPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMY 375

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +  ++C+      +  P    Y+TLI  LC + ++ +A+ +   M   G     +T+  +
Sbjct: 376 LFEEMCQR-----ELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRIL 430

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L  L + + +++A  +++ ++   ++PD+ +YN ++   C  G L A   +   +  + L
Sbjct: 431 LDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGL 490

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY  ++ G C  G + EA  L R M  DG S    TY  +    LR      A++
Sbjct: 491 HPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQ 550

Query: 265 FVMVCGGRDIKLD 277
            +    GR    D
Sbjct: 551 LLQEMLGRGFSAD 563



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 107/252 (42%), Gaps = 2/252 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ +++    +R +     + ++          +T+N I +     S    +  
Sbjct: 211 EPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVAT 270

Query: 92  TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            +  +   K  P    + TL+  LCK   +  A  VVD+M + G     +T+  ++    
Sbjct: 271 LMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHC 330

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               M+EA  + + M     +P++ +Y+ L+  YC    +     + ++M + +L  +  
Sbjct: 331 LRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIV 390

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ L+ G C  GR+ +A  L   MV  GQ     TY  ++  L +  +  QA+  +   
Sbjct: 391 TYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAI 450

Query: 270 GGRDIKLDTELF 281
            G ++  D + +
Sbjct: 451 EGSNLAPDIQSY 462



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 11/218 (5%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P    Y TLI  LCK+     A+R++  M +     + IT++ I+  L + +++ E
Sbjct: 173 EGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNE 232

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  +   M    +SP+++ YN ++   C        + ++ +M + K+  +   +  LV 
Sbjct: 233 ALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVD 292

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM-GALLRLGY-YAQAVKFVMV---CGG 271
             C+ G V  A  ++  M+  G      TY  +M G  LR     A  V   MV   C  
Sbjct: 293 ALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAP 352

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             I   T + G        ++R ++A ++ +EM +R+L
Sbjct: 353 NVISYSTLING-----YCKIQRIDKAMYLFEEMCQREL 385



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 95/235 (40%), Gaps = 13/235 (5%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           V++  C  L R+D GF            P  + + TLI  LC   KI EAL + D M   
Sbjct: 115 VINSFCH-LNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGE 173

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           GF  + +T+  ++  L +      A  L+  M +    P++  YN ++        +   
Sbjct: 174 GFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEA 233

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  +M  + +  +  TY++++ G C+    +    L+  MVD         +  ++ A
Sbjct: 234 LNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDA 293

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           L + G    A   V V   R ++ D   + +L          +EA+ +   M ++
Sbjct: 294 LCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRK 348



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 1/168 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  L+  LCK + +D+A+ ++  +          +++ ++  + R   +E A  
Sbjct: 421 IPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGD 480

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   +    + PD+  Y  ++   C +G L   + + ++M  +    D  TY+ +  G  
Sbjct: 481 LFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFL 540

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           R      A  LL+ M+  G S   ST   ++  L   G   Q+VK ++
Sbjct: 541 RNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDG-LDQSVKQIL 587



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 78/186 (41%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           IDEAL   + M       S + F  IL+ +   K       L + M  + +  D+     
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAI 114

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           ++ ++C    +     VL K+ +     D  T+  L+ G C  G++ EA  L  +MV +G
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG 174

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
                 TY  ++  L ++G    A++ +     ++ + +   + ++   L    + NEA 
Sbjct: 175 FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEAL 234

Query: 299 FILKEM 304
            I  EM
Sbjct: 235 NIFSEM 240



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/206 (18%), Positives = 78/206 (37%), Gaps = 3/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  ++  +  +K     L +   M   G      T   +++      R++  + +
Sbjct: 72  PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  + ++   PD   +  L+   C +G +     +  KM  E    +  TY  L+ G C+
Sbjct: 132 LAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCK 191

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G    A  LLR MV         TY  ++  L +     +A+        + I  +   
Sbjct: 192 VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVST 251

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + S+   + GL +F+E   +   MN+
Sbjct: 252 YNSI---IHGLCKFSEWKHVATLMNE 274


>gi|15222753|ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g55630
 gi|30793841|gb|AAP40373.1| unknown protein [Arabidopsis thaliana]
 gi|30794021|gb|AAP40457.1| unknown protein [Arabidopsis thaliana]
 gi|110739296|dbj|BAF01561.1| hypothetical protein [Arabidopsis thaliana]
 gi|332195155|gb|AEE33276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 117/266 (43%), Gaps = 4/266 (1%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V   F KS  F   P    Y+ ++++    +  + + ++  +   D       T+N +  
Sbjct: 206 VVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMF 265

Query: 79  TENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
               L     L R L  + K GF P    Y+ L+  L    K   AL +++ M E G   
Sbjct: 266 ANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEP 325

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             I F  ++  L+R  ++E     M+   ++  +PD+  Y  ++T Y   G L     + 
Sbjct: 326 GVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMF 385

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           K+M E+    +  TY++++ G C AG+ +EA  LL+ M   G +  +  Y+ ++  L   
Sbjct: 386 KEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNA 445

Query: 257 GYYAQAVKFV--MVCGGRDIKLDTEL 280
           G   +A + V  MV  G  + L ++L
Sbjct: 446 GKVLEAHEVVKDMVEKGHYVHLISKL 471



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 4/260 (1%)

Query: 57  LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF---PRKSAYDTLIGRL 113
           L+++  +D    TA TFN +  T     +  D+     +  K F   P K +Y+ ++  L
Sbjct: 174 LIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIK-SKTFNYRPYKHSYNAILHSL 232

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
             +K+      V + M E GF    +T++ ++    R  + +  + L++ M +   SPDL
Sbjct: 233 LGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDL 292

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
             YN LL          A   +L  M E  +      +  L+ G  RAG++E     +  
Sbjct: 293 YTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDE 352

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
            V  G +     Y  ++   +  G   +A +       +    +   + S+        +
Sbjct: 353 TVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGK 412

Query: 294 FNEANFILKEMNKRDLKMGF 313
           F EA  +LKEM  R     F
Sbjct: 413 FKEACALLKEMESRGCNPNF 432


>gi|48716454|dbj|BAD23061.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           [Oryza sativa Japonica Group]
          Length = 580

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A   L+  L K +    A +V D M   G  ++   ++ +L V  +      A  L
Sbjct: 143 PDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESL 202

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M    V  D  ++N ++  YC KG       V ++ME + + AD  T+++L+ G C+
Sbjct: 203 MTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCK 262

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             RV+EA  LLR M   G +  + TY  ++    R G   +AVK         +      
Sbjct: 263 ERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVAT 322

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + ++  KL    +  E N +L EM++R ++
Sbjct: 323 YNAILRKLCEDGKMKEVNVLLNEMDERKVQ 352



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 76/153 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+   C+   ++EA+++   M   G      T++ IL  L    +M+E   L
Sbjct: 283 PDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVL 342

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E +V  D    N L+ AYC +G++T+   V ++M E  L  D  TY ALV G C+
Sbjct: 343 LNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCK 402

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           A  ++EA   L  M+  G S  YS  + ++  L
Sbjct: 403 AKELDEAKEALFEMMGAGFSPNYSVLSWIVDGL 435



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 73/141 (51%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +++LI  LCK +++ EA +++  MA  G     +T+  ++    R   +EEA  L   M+
Sbjct: 253 WNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEME 312

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            + + P +  YN +L   C  G +   + +L +M+E K+ AD  T + L+   C+ G + 
Sbjct: 313 AMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMT 372

Query: 226 EAFVLLRRMVDDGQSVLYSTY 246
            A  + RRM++ G  +   TY
Sbjct: 373 SALKVKRRMMESGLQLDQFTY 393



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 2/214 (0%)

Query: 93  LARLDK-GFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           + R+D  G P  + +++T+I   C+     EA+ V + M   G     +T++ ++  L +
Sbjct: 203 MTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCK 262

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            +R++EA  L+  M    V+PD   Y  L+  YC  G+L     +  +ME   +     T
Sbjct: 263 ERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVAT 322

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+A++   C  G+++E  VLL  M +      + T   ++ A  + G    A+K      
Sbjct: 323 YNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMM 382

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              ++LD   + +L       +  +EA   L EM
Sbjct: 383 ESGLQLDQFTYKALVHGFCKAKELDEAKEALFEM 416



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 110/288 (38%), Gaps = 11/288 (3%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SL+  L  +  + ++  + R    +G  PD  T   Y  LV+      DLE    L  + 
Sbjct: 255 SLIHGLCKERRVKEASQLLREMAMAGVAPDHVT---YTTLVDGYCRAGDLEEAVKLRGEM 311

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYD-----TLIGRLCKL 116
                     T+N I         + ++   L  +D+   RK   D     TLI   CK 
Sbjct: 312 EAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDE---RKVQADHVTCNTLINAYCKR 368

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
             +  AL+V   M E G  L   T+  ++    + K ++EA   +  M     SP+ +  
Sbjct: 369 GDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSVL 428

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           ++++   C K N  A   +  ++ +     D   Y +L+   C+ G ++ A  +   M  
Sbjct: 429 SWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAGNVFNEMQG 488

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            G       YA +  A L  G    A+  +     + + +  +++  +
Sbjct: 489 KGLEADCLVYATLACAYLTAGKPVAALDILNEMAKKQLYITPQIYNCM 536



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 6/159 (3%)

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-GVLKKMEEEKLGAD 207
           ++  R  +A  + + M+   V PD  A + LLTA   K  +TAT+  V  +M    +  +
Sbjct: 121 SQSARPHDALRVFDHMRAREVVPDAHASSALLTALA-KSRMTATARKVFDQMTRAGVAMN 179

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKF 265
              Y+A++    +AG    A  L+ RM   G  +   ++  V+    R G  Y A  V+ 
Sbjct: 180 THVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRE 239

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            M   G  +K D   + SL   L    R  EA+ +L+EM
Sbjct: 240 RMENQG--VKADVVTWNSLIHGLCKERRVKEASQLLREM 276


>gi|218192338|gb|EEC74765.1| hypothetical protein OsI_10532 [Oryza sativa Indica Group]
          Length = 533

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 2/268 (0%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-FITNTENSLSVL 86
           + P  PT+  +  L+++          R       +     TA+ F   + ++ ++L  +
Sbjct: 76  SLPFAPTAPLFTTLISSLAASGRPLAARAAFASLLKSGVPPTASAFTALLRSSSDALDFV 135

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
             + R +  L    P  + Y+ +I  LC  + + EAL  +D M E G   +A +F  IL 
Sbjct: 136 DSVFRAMEALGCS-PDAAVYNWVISMLCDFQLVQEALGFLDHMLENGPRPTARSFTAILR 194

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                 R  +A  L++ M +    PD+ +Y  L+   C  G  +    +L + E +    
Sbjct: 195 AYCEQGRFFDAGRLVDTMIQNGCPPDVVSYTVLIEGLCRVGEFSTVEMILGESESQGWMP 254

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            A TY+  + G CR G ++EAF  +  M   G SV   T   +   L R   +++AV  +
Sbjct: 255 TAVTYNIYMSGLCRMGFLDEAFRQVDIMRGRGLSVTAETVHILFDCLCRNAMFSEAVCLL 314

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERF 294
                    +D   + +L S+L  ++ F
Sbjct: 315 EHSEELGWDVDVFCYNTLMSRLCDVDDF 342



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+  +  LC++  +DEA R VDIM   G  ++A T H +   L R     EA  L
Sbjct: 254 PTAVTYNIYMSGLCRMGFLDEAFRQVDIMRGRGLSVTAETVHILFDCLCRNAMFSEAVCL 313

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E  +E+    D+  YN L++  C   +      +L  + ++ +G D  ++   +   CR
Sbjct: 314 LEHSEELGWDVDVFCYNTLMSRLCDVDDFARVLKLLVDLLKKGIGPDKFSFTIAIRSLCR 373

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           AG++  A  L+         V ++T  H
Sbjct: 374 AGKLRLAKCLIENKGIKYDVVAFNTLIH 401


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 5/239 (2%)

Query: 33  PTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           P+ A Y+ L++     G   ++  V  LL +        TA TF  + N     S  +  
Sbjct: 224 PSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAA 283

Query: 90  CRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            R    + +     S   Y++LI  LC   K++E +++++ M + G   + ITF  +L  
Sbjct: 284 VRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKG 343

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             +   M +A   ++ M E  V PD+  YN L+  Y   G +     V + M ++ +  +
Sbjct: 344 FCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPN 403

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             TY+ L+ G  R+G    A  LL  M + G      TY  ++GAL   G   +AVK +
Sbjct: 404 VTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLL 462



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 3/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR---GKRMEEA 157
           P    ++T+I  LC++ ++ +A  V   +   G   S  T++ ++    +      M   
Sbjct: 189 PDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L++ M E  +SP    +  L+  YC   N  A   V ++M+++ + A   TY++L+ G
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISG 308

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  G+VEE   L+  M D G S    T+  V+    + G  A A  ++     R+++ D
Sbjct: 309 LCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPD 368

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             ++  L      L +  +A  + + M K+ +
Sbjct: 369 VVIYNILIDVYRRLGKMEDAMAVKEAMAKKGI 400



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI   CK      A+RV + M + G   S +T++ ++S L    ++EE   L
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME M+++ +SP+   +  +L  +C KG +   +  +  M E  +  D   Y+ L+    R
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRR 381

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E+A  +   M   G S   +TY  ++    R G +  A   +     + I+ D   
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L       +A  +L EM++  L+
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLE 471



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 84  SVLSDLCRTLARLD-----------KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           ++L D+ R L +++           KG  P  + Y+ LI    +      A  ++D M E
Sbjct: 373 NILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE 432

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T++ ++  L     + +A  L++ M E+ + P+   YN ++  +C KGN+ +
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKS 492

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +  +ME+ +  A+  TY+  +   C+ G+++EA  LL  M+D        TY  +  
Sbjct: 493 AYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKE 552

Query: 252 ALLRLGY 258
            ++  GY
Sbjct: 553 GMMEKGY 559



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 3/171 (1%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S  + + +L+ L   KR++ A          RVSPD+  +N +++  C  G L     V 
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214

Query: 197 KKMEEEKLGADARTYDALVLGACR---AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           K ++   L     TY++L+ G C+   AG +    +LL+ MV+ G S    T+  ++   
Sbjct: 215 KDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGY 274

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +    A AV+       + I      + SL S L    +  E   +++EM
Sbjct: 275 CKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM 325


>gi|147790305|emb|CAN63320.1| hypothetical protein VITISV_026425 [Vitis vinifera]
          Length = 722

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 19/253 (7%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN------TFNFITNTENSLSVL 86
           PT+  Y+ ++N    E  ++    L +       F  AN      +FN I +        
Sbjct: 431 PTNVSYNTILNGFCRENHIDEALQLFDH------FEWANNSPDVVSFNTILSAACKQGNS 484

Query: 87  SDLCRTLARLD-KGFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           S + R L R++ +G        T LI   C + KI E L +++ M   G   + +TF+ +
Sbjct: 485 SMIRRVLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNML 544

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L  L +   +  A  +    +     P+ T+YN L+ A   +GN +    +L+ M   +L
Sbjct: 545 LDKLCKNGLLGTAHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRL 604

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             DA TY + + G C+ G++  A  L  +M++ G +   + Y  ++ A+ + G +   V 
Sbjct: 605 KPDAVTYGSFIKGLCKEGKISVAIQLRDQMLESGLTPTVTIYNTILAAMFQRGKFWDIVS 664

Query: 265 FVMVCGGRDIKLD 277
            +     +D+ +D
Sbjct: 665 LL-----KDMTMD 672



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+     LC+  K  EAL ++  M E G   + ++++ IL+   R   ++EA  L + 
Sbjct: 399 AVYNIYFHCLCRENKSGEALSLLQSMVEKGLVPTNVSYNTILNGFCRENHIDEALQLFDH 458

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
            +    SPD+ ++N +L+A C +GN +    VL +ME E +  +  +   L+   C  G+
Sbjct: 459 FEWANNSPDVVSFNTILSAACKQGNSSMIRRVLYRMEYEGVKLNVVSSTCLIQYFCAIGK 518

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + E   LL  M+ +G +    T+  ++  L + G    A
Sbjct: 519 ISECLELLESMIRNGLNPTVVTFNMLLDKLCKNGLLGTA 557



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 6/226 (2%)

Query: 29  FPDEPTSAYYDDLVNAAGHERDLETV-RYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
           FP EPT      +++ AG  R+   V R LL K    C  +       +     S + L+
Sbjct: 185 FPTEPTLNLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALA 244

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            L  +L ++       ++Y  L+    K    +EA  ++D M   G   + IT+  I+  
Sbjct: 245 -LLYSLKKMG-AVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKF 302

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    R+ +A  ++  M +    PD+  YN +L     +        +L+ ++++++  D
Sbjct: 303 LCDEGRIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPD 362

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV---LYSTYAHVM 250
           + TY AL  G  + G+V  A  LL  ++  G +V   +Y+ Y H +
Sbjct: 363 SFTYAALTGGLLKRGQVRVANKLLLYVISAGCTVDVAVYNIYFHCL 408



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 87/202 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP +   + LI  L K     EA  V  ++   G    A +++PIL  L +  +   A  
Sbjct: 185 FPTEPTLNLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALA 244

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  +K++    +  +Y  L+  +  +G       +L +M+ +    +  TY  +V   C
Sbjct: 245 LLYSLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLC 304

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             GR+ +A  +L +M  +G      TY  ++  L     Y +  + + V   ++I  D+ 
Sbjct: 305 DEGRIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSF 364

Query: 280 LFGSLGSKLIGLERFNEANFIL 301
            + +L   L+   +   AN +L
Sbjct: 365 TYAALTGGLLKRGQVRVANKLL 386



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 92/212 (43%), Gaps = 1/212 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P  ++   ++ +   L  + +++ V + M    +  +  T + ++S+L++     EA
Sbjct: 148 GFLPSFTSLLKILKKWLGLGSLVDSMSVFEFMLRLEYFPTEPTLNLLISMLSKAGMAREA 207

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             +  V+          +YN +L A C  G       +L  +++     +A +Y ALV G
Sbjct: 208 HFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALALLYSLKKMGAVHNAASYTALVYG 267

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             + G  EEAF +L  M  DG      TY  ++  L   G    A+  +   G      D
Sbjct: 268 FSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRIGDALDILGKMGKEGCDPD 327

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              +  +  +L   +R+ E   +L+ ++++++
Sbjct: 328 IVTYNVILRELFHQDRYVEIGELLQVIDQKEI 359



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 57/138 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L G L K  ++  A +++  +   G  +    ++     L R  +  EA  L
Sbjct: 361 PDSFTYAALTGGLLKRGQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSL 420

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E  + P   +YN +L  +C + ++     +    E      D  +++ ++  AC+
Sbjct: 421 LQSMVEKGLVPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTILSAACK 480

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G       +L RM  +G
Sbjct: 481 QGNSSMIRRVLYRMEYEG 498


>gi|297844892|ref|XP_002890327.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336169|gb|EFH66586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 903

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 98/208 (47%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P +  +  LI   C+  +I +A+RV D M E G   +    + +++   +  ++ EA
Sbjct: 326 KLVPDQHMHGVLIDGYCRNGRICDAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVEA 385

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++  M +  + PD   YN L+  YC  G++     +  +M ++++     TY+ L+ G
Sbjct: 386 EQILTRMNDWSLKPDHHTYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKG 445

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             R G   +   L + M+  G +    + + ++ AL +LG + +A+K       R +  D
Sbjct: 446 YSRIGAFHDVLSLWKMMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLARGLLTD 505

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMN 305
           T     + S L  +E+ NEA  IL  +N
Sbjct: 506 TITLNVMISGLCKMEKVNEAKEILDNVN 533



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 3/164 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           ++LI     +  ++   RV+ +M+E G   + +TF  ++    +   MEEA  + E++ E
Sbjct: 265 NSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTFTSLIKSYCKKGLMEEAEQVFELVTE 324

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
            ++ PD   +  L+  YC  G +     V   M E  +  +    ++L+ G C++G++ E
Sbjct: 325 KKLVPDQHMHGVLIDGYCRNGRICDAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVE 384

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           A  +L RM D      + TY  ++    R G+  +A+K   +CG
Sbjct: 385 AEQILTRMNDWSLKPDHHTYNTLVDGYCRAGHVDEALK---LCG 425



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 137/312 (43%), Gaps = 8/312 (2%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           Q V   +  T+   +  +P    Y+ LV+       ++    L  +  +     T  T+N
Sbjct: 381 QLVEAEQILTRMNDWSLKPDHHTYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYN 440

Query: 75  FITNTENSLSVLSDLCRTLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            +    + +    D+       L +G    + +  TL+  L KL   DEA+++ + +   
Sbjct: 441 ILLKGYSRIGAFHDVLSLWKMMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLAR 500

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G     IT + ++S L + +++ EA  +++ +   R  PD+  Y  L   Y   GNL   
Sbjct: 501 GLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPDVQTYQALSHGYYNVGNLKEA 560

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             V   ME++ +      Y+ L+ GA +   + +   L+  +   G +   +TY  ++  
Sbjct: 561 FAVKDFMEKKGIFPTIEMYNTLISGAFKYKHLNKVADLVIELRARGLTPTVATYGALITG 620

Query: 253 LLRLGYY--AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              +G    A A  F M+  G  I L+  +   + + L  L++F+EA  +L+++   DL 
Sbjct: 621 WCNIGMIDKAYATCFEMIEKG--ITLNVNICSKIANSLFRLDKFDEACLLLQKIVDFDLL 678

Query: 311 M-GFK-LRDYYE 320
           + G++ L+++ E
Sbjct: 679 LPGYQSLKEFLE 690



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P    Y+  I  LCK  K+ +A ++  D+++   F     T+  ++        + +A+ 
Sbjct: 717 PNNIVYNVAIAGLCKAGKLTDAQKLFSDLLSSDRFIPDEYTYTILIHGCAIDGDINKAFN 776

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + M    + P++  YN L+   C  GN+     +L+K+ ++    +A TY+ L+ G  
Sbjct: 777 LRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLRKLPQKGTTPNAITYNTLIDGLI 836

Query: 220 RAGRVEEAFVLLRRMVDDG 238
           ++G V EA  L  +M++ G
Sbjct: 837 KSGDVAEAMRLKEKMIEKG 855



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 79/177 (44%), Gaps = 1/177 (0%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           ++   C+  K+D+A+     M    G  L+ +T + +++       +E    ++ +M E 
Sbjct: 231 VVNAYCRCGKVDKAMAFAKEMDNSLGLELNVVTCNSLINGYAMIGDVEGMTRVLRLMSER 290

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
            VS ++  +  L+ +YC KG +     V + + E+KL  D   +  L+ G CR GR+ +A
Sbjct: 291 GVSRNVVTFTSLIKSYCKKGLMEEAEQVFELVTEKKLVPDQHMHGVLIDGYCRNGRICDA 350

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
             +   M++ G     +    ++    + G   +A + +       +K D   + +L
Sbjct: 351 VRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVEAEQILTRMNDWSLKPDHHTYNTL 407



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 63/128 (49%), Gaps = 1/128 (0%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           I ++  ++ L +  ++ +A  L  +++   R  PD   Y  L+      G++     +  
Sbjct: 720 IVYNVAIAGLCKAGKLTDAQKLFSDLLSSDRFIPDEYTYTILIHGCAIDGDINKAFNLRD 779

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M  + +  +  TY+AL+ G C+ G V+ A  LLR++   G +    TY  ++  L++ G
Sbjct: 780 EMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLRKLPQKGTTPNAITYNTLIDGLIKSG 839

Query: 258 YYAQAVKF 265
             A+A++ 
Sbjct: 840 DVAEAMRL 847


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 119/276 (43%), Gaps = 3/276 (1%)

Query: 33   PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVLSDLCR 91
            P + + ++++N  G    L+    L  +     C  +  T+N I      S S  S++  
Sbjct: 1323 PDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPS 1382

Query: 92   TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               R+ +    P    Y  LI   CK  ++++A+ +++ M E GF      +  ++  L 
Sbjct: 1383 WFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 1442

Query: 150  RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
            + KR + A  L + +KE   S     Y  ++      G L     +  +M +     D  
Sbjct: 1443 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVY 1502

Query: 210  TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
             Y+AL+ G  R G ++EA   +RRM + G     ++Y  ++  L + G   +A++ +   
Sbjct: 1503 AYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 1562

Query: 270  GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
                ++ D   + ++   L     F EA+ ++KEMN
Sbjct: 1563 KQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMN 1598



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 2/166 (1%)

Query: 90   CRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            C     L +     SA  Y  +I  L K  ++D+A+ + D M + G       ++ ++S 
Sbjct: 1451 CELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSG 1510

Query: 148  LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            L R   ++EA   M  M+E    PD+ +YN +L      G       +L  M++  +  D
Sbjct: 1511 LARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 1570

Query: 208  ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
              +Y+ ++     AG  EEA  L++ M   G      TY+ ++ A+
Sbjct: 1571 VVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAI 1616



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 119/328 (36%), Gaps = 67/328 (20%)

Query: 32   EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFITNTENSLSVLSDLC 90
            +P +  Y+ ++    HE   E V  L N+ + +  CF    T++         +++S  C
Sbjct: 1181 QPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYS---------ALISAFC 1231

Query: 91   RTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
            + L R D               P    Y  LI    K      AL + + M         
Sbjct: 1232 K-LGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDV 1290

Query: 139  ITFHPILSVLTRGKRMEEAW-----------------------------------GLMEV 163
             T+  ++  L +  R++EA+                                    L + 
Sbjct: 1291 FTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQE 1350

Query: 164  MKEIRVSPDLTAYNYLLTA-YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M+ +R  P +  YN ++ A +  K   +      ++M+E  +   + TY  L+ G C+  
Sbjct: 1351 METLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTN 1410

Query: 223  RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV----CGGRDIKLDT 278
            R+E+A +LL  M + G     + Y  ++ AL +   Y  A +        CG    ++  
Sbjct: 1411 RMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYA 1470

Query: 279  ELFGSLGSKLIGLERFNEANFILKEMNK 306
             +   LG       R ++A  +  EMNK
Sbjct: 1471 VMIKHLGKA----GRLDDAINMFDEMNK 1494


>gi|326492636|dbj|BAJ90174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 631

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 137/333 (41%), Gaps = 57/333 (17%)

Query: 27  GAFPDE---PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           G   DE   P+   Y  L+ A  ++R  E +  LL           A  FN + N+    
Sbjct: 88  GHLADEGHRPSLVTYTTLLTAVTNQRAFEAIPSLLAGMDAAGLRPDAIFFNALINSFVEA 147

Query: 84  SVLSDLCRTLARLDKGFP----RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS-- 137
             + +   T  ++ +  P      S ++TLI       + DE+ R+ D+MA G       
Sbjct: 148 GRMGEATSTFWKMSRHHPGCRPTISTFNTLIKGFGIAGRPDESQRIFDMMAGGDGDGDRD 207

Query: 138 --AITFHPILS---VLTRG----KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
             A T  P L+   +L +     +R+EEAWG++  M+   V PD+  YN + +AY     
Sbjct: 208 RVASTVRPNLTTYNILVKAWCDHRRLEEAWGVVGRMRARGVEPDVVTYNTVASAYAKNDE 267

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYS- 244
                 ++ +M   +L    RT+  +V G CR GR+EEA   +R+M D G     ++++ 
Sbjct: 268 TWRAEELVVEMVRARLRTSERTWGIIVGGYCREGRLEEALRCVRQMKDAGVLPNVIVFNT 327

Query: 245 -------------------------------TYAHVMGALLRLGYYAQAVKFV--MVCGG 271
                                          TY+H + A   LG+ A+  K    MV  G
Sbjct: 328 LLKGFLDANDTAAADDVLGLMEHFGIKPDIVTYSHQLNAFSSLGHMAKCSKVFDKMVEAG 387

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             I+ D +++  L    +  ++  +A  +L+ M
Sbjct: 388 --IEPDPQVYSILAKGHVRAQQPGKAEELLERM 418



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 71/166 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y   +     L  + +  +V D M E G       +  +     R ++  +A  L
Sbjct: 355 PDIVTYSHQLNAFSSLGHMAKCSKVFDKMVEAGIEPDPQVYSILAKGHVRAQQPGKAEEL 414

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M  + V P++  +  +++ +C   ++   + V +KM +  +  + RT++ L+ G   
Sbjct: 415 LERMCRLGVRPNVVTFTTVISGWCSVADMDNATRVYRKMRDAGVRPNLRTFETLIWGYSE 474

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             +  +A  +L+ M + G     STY+ V  A   +G    A + V
Sbjct: 475 QKQPWKAEEVLQMMQEAGIRPKQSTYSLVADAWKAVGLVKNANRTV 520



 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           L   KK  +A  +   +A+ G   S +T+  +L+ +T  +  E    L+  M    + PD
Sbjct: 74  LIDAKKPHQAQDLFGHLADEGHRPSLVTYTTLLTAVTNQRAFEAIPSLLAGMDAAGLRPD 133

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA--RTYDALVLGACRAGRVEEA 227
              +N L+ ++   G +   +    KM     G      T++ L+ G   AGR +E+
Sbjct: 134 AIFFNALINSFVEAGRMGEATSTFWKMSRHHPGCRPTISTFNTLIKGFGIAGRPDES 190


>gi|356555104|ref|XP_003545878.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
           mitochondrial-like [Glycine max]
          Length = 395

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 1/199 (0%)

Query: 116 LKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
            +++D AL+ + D+ +      S  TF+ +L+VL   +    A  L      + VSPD  
Sbjct: 132 FQRVDMALQTLHDMNSLFHCSPSTRTFNFVLNVLVNTRLYAAARELFLHAPPLGVSPDAC 191

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             N ++   C +G + A  GVL++  E    A+ARTY  L+ G C  GRVEEAF LL +M
Sbjct: 192 TLNIVIKGLCARGEMDAAFGVLEEFHELGCEANARTYATLMKGLCEKGRVEEAFGLLEKM 251

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
            ++G     + Y  ++G L ++G   +  + +    GR +  +   +  +   L+   R 
Sbjct: 252 EEEGVETDVAVYNVLIGGLRKVGRVDEGWRVLEGMVGRGVCPNEGTYNEVLCGLVEKGRV 311

Query: 295 NEANFILKEMNKRDLKMGF 313
            E   +++ M  +     F
Sbjct: 312 EEGKGVVERMGNKGFVPSF 330



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 120/271 (44%), Gaps = 11/271 (4%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGH--ERDLETVRYLLN 59
           +L+ KL     +   + + ++ TK   F D+    ++  L+ A  H  +R    ++ L +
Sbjct: 89  TLISKLAQAHQLNPILTLHQTLTKRRRFSDD----FFYTLIKAYAHSFQRVDMALQTLHD 144

Query: 60  KRARDCCFNTANTFNFITNTENSLSVLS---DLCRTLARLDKGFPRKSAYDTLIGRLCKL 116
             +   C  +  TFNF+ N   +  + +   +L      L    P     + +I  LC  
Sbjct: 145 MNSLFHCSPSTRTFNFVLNVLVNTRLYAAARELFLHAPPLGVS-PDACTLNIVIKGLCAR 203

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
            ++D A  V++   E G   +A T+  ++  L    R+EEA+GL+E M+E  V  D+  Y
Sbjct: 204 GEMDAAFGVLEEFHELGCEANARTYATLMKGLCEKGRVEEAFGLLEKMEEEGVETDVAVY 263

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           N L+      G +     VL+ M    +  +  TY+ ++ G    GRVEE   ++ RM +
Sbjct: 264 NVLIGGLRKVGRVDEGWRVLEGMVGRGVCPNEGTYNEVLCGLVEKGRVEEGKGVVERMGN 323

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
            G    +  Y  ++      G   + V++V+
Sbjct: 324 KGFVPSFGAYKDLVKGFCEKGLVGE-VEWVV 353


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 1/219 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P K AY+ LI   C    + +A  ++  +   G  L  + F  I++ L +  R+
Sbjct: 459 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 518

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  + ++   + + PD   YN L+  YC  G +     V   M    +  +   Y  L
Sbjct: 519 MDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTL 578

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           V G C+ GR++E   L R M+  G       Y+ ++  L   G    A           I
Sbjct: 579 VNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGI 638

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
            +D   +  +   L     F+EA F+ KE+   ++K+  
Sbjct: 639 AMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 677



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 13/287 (4%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLET----VRYLLNKRARDCCFNTANTFNFI 76
           +   + G  PD  T   Y+ +V+A    R ++     +R ++NKR          T+N +
Sbjct: 246 KEMVQRGIPPDLVT---YNSVVHALCKARAMDKAEAFLRQMVNKRV----LPNNWTYNNL 298

Query: 77  TNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
               +S     +  R    + +    P       L+G LCK  KI EA  V D MA  G 
Sbjct: 299 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 358

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
                +++ +L+       + +   L ++M    ++PD   +N L+ AY   G L     
Sbjct: 359 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMI 418

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +  +M +  +  D  TY  ++   CR G++++A     +M+D G +     Y  ++    
Sbjct: 419 IFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 478

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
             G   +A + +       + LD   F S+ + L  L R  +A  I 
Sbjct: 479 THGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF 525



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 97/212 (45%), Gaps = 4/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI        +D+A+ + + M + G     +T+  +++ L R  +M++A   
Sbjct: 395 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 454

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V+PD  AYN L+  +C  G+L     ++ ++    +  D   + +++   C+
Sbjct: 455 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 514

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDT 278
            GRV +A  +    V+ G       Y  +M     +G   +A++    MV  G  I+ + 
Sbjct: 515 LGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG--IEPNV 572

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             +G+L +    + R +E   + +EM +R +K
Sbjct: 573 VGYGTLVNGYCKIGRIDEGLSLFREMLQRGIK 604



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/204 (18%), Positives = 87/204 (42%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           + ++I  LCKL ++ +A  + D+    G    A+ ++ ++       +ME+A  + + M 
Sbjct: 505 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 564

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y  L+  YC  G +     + ++M +  +      Y  ++ G   AGR  
Sbjct: 565 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTV 624

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A +    M + G ++   TY  V+  L +   + +A+         ++K++     ++ 
Sbjct: 625 PAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 684

Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
             +    R  EA  +   +++  L
Sbjct: 685 DGMFQTRRVEEAKDLFASISRSRL 708



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 82/210 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+T+I    K   +++A  +   M + G     +T++ ++  L + + M++A   
Sbjct: 220 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 279

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M   RV P+   YN L+  Y   G       V K+M    +  D  T   L+   C+
Sbjct: 280 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 339

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+++EA  +   M   GQ+    +Y  ++      G          +  G  I  D   
Sbjct: 340 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 399

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F  L          ++A  I  EM    +K
Sbjct: 400 FNVLIKAYANCGMLDKAMIIFNEMRDHGVK 429



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEAW 158
           P   +Y  L+  LC   K  +A  ++ +MAEGG   S   + ++ ++    +   + +A 
Sbjct: 183 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 242

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L + M +  + PDL  YN ++ A C    +      L++M  +++  +  TY+ L+ G 
Sbjct: 243 DLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGY 302

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              G+ +EA  + + M          T + +MG+L + G   +A
Sbjct: 303 SSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 346



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           + L+   C+ K+ DEAL ++     E G      ++  +L  L    +  +A  L+ +M 
Sbjct: 153 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 212

Query: 166 E--IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           E     SP++ AYN ++  +  +G++     + K+M +  +  D  TY+++V   C+A  
Sbjct: 213 EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARA 272

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +++A   LR+MV+        TY +++      G + +AV+
Sbjct: 273 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVR 313



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 84/228 (36%), Gaps = 42/228 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+   CK+ +IDE L +   M + G   S I +  I+  L    R   A   
Sbjct: 570 PNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMK 629

Query: 161 MEVMKEIRVSPDLTAYNYLLTAY----CF---------------KGNLTATSGVL----- 196
              M E  ++ D+  YN +L       CF               K N+   + ++     
Sbjct: 630 FHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQ 689

Query: 197 -KKMEEEK----------LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            +++EE K          L     TY  ++    + G VEEA  +   M + G       
Sbjct: 690 TRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRL 749

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD-------TELFGSLGS 286
             HV+  LL+     +A  ++     R+  L+        +LF S G+
Sbjct: 750 LNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGT 797


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 96/213 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  +I   CK+KK DEA+ +   M         +T+  ++  L++  R+  A  L
Sbjct: 363 PDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQL 422

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  V P++  YN +L A C    +     +L K +++    D  TY  L+ G C+
Sbjct: 423 VDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQ 482

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +G++E+A  +   ++  G ++    Y  ++      G + +A+  +          D + 
Sbjct: 483 SGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKT 542

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           +  +   L   +  + A  +L+EM  R L + F
Sbjct: 543 YEIIILSLFKKDENDMAEKLLREMIARGLPLNF 575



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 77/163 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+   CK  K+ E   V D+M + G   + +T++ ++      K + +A  +
Sbjct: 293 PDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSI 352

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V+PD+ +Y+ ++  +C          + K+M  + +  D  TY +L+ G  +
Sbjct: 353 FNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSK 412

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           +GR+  A  L+ +M D G      TY  ++ AL +     +A+
Sbjct: 413 SGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAI 455



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 2/217 (0%)

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L R+D     P    Y+T+I  +CK+K ++EA  +   M   G     +T+  ++S    
Sbjct: 213 LQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCI 272

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++++A  L   M    + PD+  +N L+ A+C  G +     V   M ++ +  +  T
Sbjct: 273 LGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVT 332

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y++L+ G C    V +A  +   M   G +    +Y+ ++    ++  + +A+       
Sbjct: 333 YNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMH 392

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++I  D   + SL   L    R + A  ++ +M+ R
Sbjct: 393 RKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR 429



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 130/317 (41%), Gaps = 43/317 (13%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           P +  ++ ++ +    +   TV YL  K   R    N  N  N + N    L ++     
Sbjct: 83  PPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNC-NILINCFCQLGLIPFAFS 141

Query: 92  TLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
             A++ K G+ P    + TL   LC   +I +A    D +   GF    I++  ++  L 
Sbjct: 142 VFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLC 201

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +      A  L++ +    V P++  YN ++ + C    +     +  +M  + +  D  
Sbjct: 202 KVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVV 261

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMV------------------------DDGQSVL--- 242
           TY AL+ G C  G++++A  L  +M+                         +G++V    
Sbjct: 262 TYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321

Query: 243 --------YSTYAHVMGA--LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
                   + TY  +M    L++    A+++   M  GG  +  D + +  + +    ++
Sbjct: 322 MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG--VNPDIQSYSIMINGFCKIK 379

Query: 293 RFNEANFILKEMNKRDL 309
           +F+EA  + KEM+++++
Sbjct: 380 KFDEAMNLFKEMHRKNI 396



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 84/213 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI   C+L  I  A  V   + + G+    ITF  +   L    ++++A+  
Sbjct: 118 PNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLF 177

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +  +    D  +Y  L+   C  G   A   +L++++   +  +   Y+ ++   C+
Sbjct: 178 HDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCK 237

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V EAF L   MV  G S    TY+ ++     LG    A+         +IK D   
Sbjct: 238 VKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYT 297

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           F  L +      +  E   +   M K+ +K  F
Sbjct: 298 FNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNF 330



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 81/186 (43%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+A+ + + +        A  F+ IL  L + K       L + M+   + P+L   N 
Sbjct: 66  VDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+  +C  G +     V  K+ +     D  T+  L  G C  G++++AF+   ++V  G
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALG 185

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
                 +Y  ++  L ++G    A+  +    G  ++ +  ++ ++   +  ++  NEA 
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAF 245

Query: 299 FILKEM 304
            +  EM
Sbjct: 246 DLFSEM 251


>gi|219885281|gb|ACL53015.1| unknown [Zea mays]
 gi|414866677|tpg|DAA45234.1| TPA: hypothetical protein ZEAMMB73_414823 [Zea mays]
          Length = 559

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 3/216 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   ++ T +  LC+    DEA   +D M   GF  S  TF  ++  L +  R+ +A  +
Sbjct: 176 PDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEV 235

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M  +   P +  YN L+   C+ G L     +LKK+++  L  D  T+  ++ G C+
Sbjct: 236 LDAMCGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCK 295

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM-VCGGRDIKLDTE 279
            GR EEA  +    +  G S    TY  ++    + G   +A   +M +CG  D     +
Sbjct: 296 VGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPD 355

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
              S G  L  L R  E +    +  KR  + GF++
Sbjct: 356 KT-SFGIVLTALLRAGETSAAW-QTYKRMERAGFEV 389



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 3/186 (1%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
            ++E ++V+D++      L+   ++ ILS L R      A  L   M    V+PD  ++ 
Sbjct: 126 PVEERVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFRAMP---VAPDAHSFA 182

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
             +   C +G        L +M          T+ A+V   C+ GRV +A  +L  M   
Sbjct: 183 TAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMCGL 242

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G      TY  ++G L  +G   +A++ +       +  D   F  +      + R  EA
Sbjct: 243 GCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEA 302

Query: 298 NFILKE 303
             I  +
Sbjct: 303 TAIFHD 308



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 76/212 (35%), Gaps = 49/212 (23%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG- 159
           P    Y++L+G LC + +++EAL ++  + +        TF  +L    +  R EEA   
Sbjct: 246 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAI 305

Query: 160 -----------------------------------LMEVM--KEIRVSPDLTAYNYLLTA 182
                                              LME+    +    PD T++  +LTA
Sbjct: 306 FHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIVLTA 365

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA--------GRVEEAFVLLRRM 234
               G  +A     K+ME      D R  D L  G CR         G  EE F    ++
Sbjct: 366 LLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEVFA---KV 422

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           V  G   +  TY  +  AL R G    AV  +
Sbjct: 423 VASGHEPVSYTYCLMAQALARGGEVDAAVALL 454



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +EE   +++++     +  ++ YN +L+A    G+      + + M    +  DA ++  
Sbjct: 127 VEERVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFRAM---PVAPDAHSFAT 183

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
            V   CR G  +EA + L  MV  G     +T++ V+G L + G   +A++ +    G  
Sbjct: 184 AVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMCGLG 243

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +     + SL   L  + R  EA  +LK++    L
Sbjct: 244 CEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPL 279


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 31/293 (10%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT- 77
           V    ++ G  PDE T   Y  LV+A       E+ R LL +   D    ++  F+ I  
Sbjct: 321 VLDEMSQCGVAPDEAT---YSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILA 377

Query: 78  ------NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
                 + + + +VL ++  +  R D+ F     Y+ +I    K   +  A+   + M E
Sbjct: 378 GFRDRGDWQKAFAVLREMQASGVRPDRHF-----YNVMIDTFGKYNCLGHAMDAFNKMRE 432

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T++ ++    +G R + A  L E M+E    P  T YN ++     + +   
Sbjct: 433 EGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEG 492

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +L +M+E+ L  +  TY  LV    R+GR +EA   +  M  DG     + Y  ++ 
Sbjct: 493 VEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVN 552

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           A      YAQ          R ++ D   + +L   LI +E+F++   I +EM
Sbjct: 553 A------YAQ----------RGLRPDVITYTTLMKALIRVEQFDKVPVIYEEM 589



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 1/182 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI    +    D AL ++      G    +     ++S L    R+ EA  L
Sbjct: 226 PDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEAL 285

Query: 161 -MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +E      + P   AYN LL  Y    +L     VL +M +  +  D  TY  LV    
Sbjct: 286 FLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYT 345

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           RAGR E A +LL+ M  DG       ++ ++      G + +A   +       ++ D  
Sbjct: 346 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRH 405

Query: 280 LF 281
            +
Sbjct: 406 FY 407



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 55/115 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           PR  AY+ L+    ++  +  A +V+D M++ G      T+  ++   TR  R E A  L
Sbjct: 297 PRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARIL 356

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           ++ M+   V P    ++ +L  +  +G+      VL++M+   +  D   Y+ ++
Sbjct: 357 LKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMI 411


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 107/235 (45%), Gaps = 4/235 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L++    + +++    + N+  +D       T++ I         L   C T
Sbjct: 347 PNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACET 406

Query: 93  LARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
             ++ + G  P    Y  ++  LC++   D+A  ++D M   G   + ITF+  +  L R
Sbjct: 407 WNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCR 466

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN-LTATSGVLKKMEEEKLGADAR 209
             R+E A  +++ M++    P++  YN LL    F+ N      G+++++EE K+  D  
Sbjct: 467 AGRVEWAMNVLDQMEKYECLPNIRTYNELLDGL-FRANAFREACGLIRELEERKVEFDCV 525

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           TY+ ++ G    G  ++   LL +M+ +G  +   T    + A  +LG    A+K
Sbjct: 526 TYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIK 580



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 43/225 (19%)

Query: 84  SVLSDLCRTLARLDKGF-------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           +V+S +C+ L  +DK         P    Y+ LI  +CK  +  EA  +++ M + G   
Sbjct: 219 TVISSMCK-LGDVDKARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDP 277

Query: 137 SAITFHPILSVLT-----------------RG------------------KRMEEAWGLM 161
           + I++  ++S L+                 RG                   R+ +A GL 
Sbjct: 278 NVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLW 337

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
            +M    VSP++ AYN L+   C  GN+     V  +ME++ +  +  TY  ++ G  ++
Sbjct: 338 NLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKS 397

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G +  A     +M++ G       Y  ++  L ++  + QA   +
Sbjct: 398 GDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLI 442



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 105/240 (43%), Gaps = 24/240 (10%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           + F +   F  EP+   Y+ +++A   +   + +  L N    +       T+N +    
Sbjct: 130 KMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKAL 189

Query: 81  NSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
                +   C+ L  + +KG  P   +Y T+I  +CKL  +D+A  +            A
Sbjct: 190 CQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKAREL------------A 237

Query: 139 ITFHPILSV-------LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
           + F P++ V       + +  R +EA+ LM  M +  V P++ +Y+ +++     GN+  
Sbjct: 238 MKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVEL 297

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAH 248
           +  V  +M       + +T+ +L+ G    GRV +A  L   M+ +G S   V Y+T  H
Sbjct: 298 SLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIH 357



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 100/239 (41%), Gaps = 9/239 (3%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           +S + SG F  + T   Y+ +++  G   +++ V YLL +   +    +   F F+    
Sbjct: 62  KSLSNSGTF--KHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCY 119

Query: 81  NSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
              ++     +   R+ +    P    Y+ ++  L           + + M   G   + 
Sbjct: 120 RRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNV 179

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T++ +L  L +  +++ A  L+  M      PD  +Y  ++++ C  G++     +  K
Sbjct: 180 FTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMK 239

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            E          Y+AL+ G C+  R +EAF L+  MVD G      +Y+ V+  L  +G
Sbjct: 240 FE-----PVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMG 293



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 9/203 (4%)

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           N + ++SV + + +   R     P  + Y T+I    K   +  A    + M   G   +
Sbjct: 364 NMDEAISVWNQMEKDSIR-----PNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPN 418

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            + +  ++ VL +    ++A+ L++ M      P +  +N  +   C  G +     VL 
Sbjct: 419 VVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLD 478

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +ME+ +   + RTY+ L+ G  RA    EA  L+R + +        TY  +M      G
Sbjct: 479 QMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNG 538

Query: 258 YYAQAVKFV--MVCGGRDIKLDT 278
            + Q ++ +  M+  G  IKLDT
Sbjct: 539 MHQQVLQLLGKMLVNG--IKLDT 559



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 5/203 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+T+I +L +  ++D    ++  M       S   F  ++    R    E+   +   +
Sbjct: 76  TYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRI 135

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +E    P +  YN +L A   +      + +   M+ E L  +  TY+ L+   C+ G+V
Sbjct: 136 REFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKV 195

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           + A  LL  M + G      +Y  V+ ++ +LG   +A +  M       +    ++ +L
Sbjct: 196 DGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAM-----KFEPVVPVYNAL 250

Query: 285 GSKLIGLERFNEANFILKEMNKR 307
              +    RF EA  ++ EM  R
Sbjct: 251 IHGVCKECRFKEAFDLMNEMVDR 273


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +  LD+GF  KS             Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 IGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  +   M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 96/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    K+  +DE  R+  +M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANAL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + ++M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISXLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 85/174 (48%), Gaps = 5/174 (2%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+   CK  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L  VM+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + R+M+   QS+L    TY  ++  L + G   QA   +
Sbjct: 248 IDGHCKNGRVDLAMEIYRQML--SQSLLPDLITYNTLIYGLCKKGDLKQAQDLI 299



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 17/217 (7%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF 100
           ++ A+G + D+ T   L+N   ++   + AN   F    +N L                 
Sbjct: 196 VMQASGVQPDVYTYSVLINGLCKESKMDDANAL-FDEMLDNGL----------------V 238

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +++A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL+   C+
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQ 358

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   +I  L KLK         +   E G+  S   F+ ++    +G
Sbjct: 90  RLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKG 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMDDANALFDEMLDNG 236


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 89/210 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TL+  LC   ++ EA+ +VD M         IT + I++ L    R+ EA  L
Sbjct: 158 PNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDL 217

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M      P+   Y  +L   C  GN  +   +L+KME  K+     TY  ++   C+
Sbjct: 218 IARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCK 277

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+++A      M   G      TY  ++G+    G +    + +     R I  +   
Sbjct: 278 DGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVT 337

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F +L   L+   +  EA  +  EM  R ++
Sbjct: 338 FSALIDSLVKEGKLTEAKDLYNEMITRGIE 367



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 96/209 (45%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L +  P     +T++  LC   ++ EA+ ++  M   G   +  T+ PIL+ + +     
Sbjct: 188 LSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTA 247

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L+  M+  ++ P +  Y  ++   C  G L        +ME + + A+  TY++L+
Sbjct: 248 SALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLI 307

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
              C  GR ++   LLR M+    +    T++ ++ +L++ G   +A         R I+
Sbjct: 308 GSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIE 367

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEM 304
            +T  + SL   L   +R +EAN ++  M
Sbjct: 368 PNTITYNSLIYGLCNDKRLDEANQMMDLM 396



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 118/283 (41%), Gaps = 18/283 (6%)

Query: 2   SLLRKLPTKFLIPQSVLVTR---SFTKSGAFPD-------------EPTSAYYDDLVNAA 45
            LLR + T+ + P  V  +    S  K G   +             EP +  Y+ L+   
Sbjct: 321 QLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGL 380

Query: 46  GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGFPRKS 104
            +++ L+    +++      C     T+N + N       + D  R   ++  +G    +
Sbjct: 381 CNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADT 440

Query: 105 A-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
             Y TLI   C+ +K+  A +V   M   G     +T+  +L  L     +EEA G+++ 
Sbjct: 441 VTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQ 500

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M + ++  D+  YN ++   C    +     +   +  + +  D ++Y+ ++ G C+   
Sbjct: 501 MHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSS 560

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + EA  L R+M +DG      TY  ++ A LR      +V+ +
Sbjct: 561 LSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLI 603



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+  LC   +++EAL ++D M +    L    ++ I+  +    ++++AW L
Sbjct: 473 PGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSL 532

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V  D+ +YN +L+  C + +L+    + +KM+E+    D  TY+ L+    R
Sbjct: 533 FCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLR 592

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
              +  +  L+  M   G S   ST   VM  L
Sbjct: 593 GNDITTSVQLIEEMKRCGFSSDASTVKIVMDML 625



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 101/247 (40%), Gaps = 2/247 (0%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126
           F      N +  + N+ S L DL R +    K  P    Y  +I  LCK  ++D+AL   
Sbjct: 231 FTYGPILNRMCKSGNTASAL-DLLRKMEH-RKIKPHVVTYTIIIDNLCKDGRLDDALSFF 288

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   G   +  T++ ++       R ++   L+  M   +++P++  ++ L+ +   +
Sbjct: 289 SEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKE 348

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           G LT    +  +M    +  +  TY++L+ G C   R++EA  ++  MV  G      TY
Sbjct: 349 GKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTY 408

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
             ++    +       ++       R +  DT  + +L        +   A  + +EM  
Sbjct: 409 NILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVS 468

Query: 307 RDLKMGF 313
           + +  G 
Sbjct: 469 QGVHPGI 475



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 88/213 (41%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    ++ L G L + K+ D  L +   M   G      T + +++   R +++  A
Sbjct: 85  RPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFA 144

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +  M  + ++   P+   +N LL   C +G +     ++  M   +   D  T + +V G
Sbjct: 145 FSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNG 204

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C   RV EA  L+ RM+ +G      TY  ++  + + G  A A+  +     R IK  
Sbjct: 205 LCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPH 264

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              +  +   L    R ++A     EM  + +K
Sbjct: 265 VVTYTIIIDNLCKDGRLDDALSFFSEMETKGIK 297



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K D+A+ +   M       + I F+ +  +L R K+ +    L + M+   ++ DL   N
Sbjct: 70  KKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLN 129

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
            ++  +C +  L      + K+ +     +  T++ L+ G C  GRV EA  L+  MV
Sbjct: 130 IMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMV 187


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 2/224 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L+N       +   + LL +   +    T  TFN + +       L     
Sbjct: 222 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 281

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+ + +    P   +Y +++   CK  KI EA+ ++D M       +A  ++ I+    
Sbjct: 282 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 341

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
                ++A+ L+E MK   +SP +  YN L+   C +  ++    ++  +   +L  DA 
Sbjct: 342 EHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 401

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +Y+ L+   C  G +++A  L +RM   G      TY  ++  L
Sbjct: 402 SYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGL 445



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 10/221 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   ++ L++A G    LE    +L++   +       ++  I N   +      +   
Sbjct: 258 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVN---AFCKNGKIPEA 314

Query: 93  LARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +A LD  F     P    Y+ +I    +    D+A  +V+ M   G   S +T++ ++  
Sbjct: 315 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 374

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++ EA  ++  +   R+ PD  +YN L++A C++GN+     + ++M +  + + 
Sbjct: 375 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 434

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
            RTY  L+ G   AGR+ E   L ++M+ +  +V+ S   H
Sbjct: 435 VRTYHQLISGLGGAGRLNEMEYLYQKMMQN--NVVPSNAIH 473



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 105/221 (47%), Gaps = 2/221 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK ++I  A  ++  M + G   +  TF+ ++    R  ++E+ + +
Sbjct: 223 PDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIV 282

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  + P++ +Y  ++ A+C  G +     +L  M  + +  +A+ Y+A++     
Sbjct: 283 LSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVE 342

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  ++AF+L+ +M  +G S    TY  ++  L      ++A + +       +  D   
Sbjct: 343 HGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVS 402

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
           + +L S        ++A  + + M+K  +K    +R Y+++
Sbjct: 403 YNTLISACCYRGNIDKALDLQQRMHKYGIKS--TVRTYHQL 441



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 89/209 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+TLI   C+  +++ A      M         IT++ +++ L + +R+  A  L
Sbjct: 188 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 247

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  V+P +  +N L+ AY   G L     VL +M+E  L  +  +Y ++V   C+
Sbjct: 248 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 307

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ EA  +L  M           Y  ++ A +  G   QA   V       I      
Sbjct: 308 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVT 367

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   L    + +EA  I+  ++   L
Sbjct: 368 YNLLIKGLCNQSQISEAEEIINSLSNHRL 396



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 91/200 (45%), Gaps = 1/200 (0%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  LCK  K+  A  V+  +   G   + + ++ +++   +   +E A+     MK   
Sbjct: 161 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 220

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD   YN L+   C    +T    +L +M++  +     T++ L+    R G++E+ F
Sbjct: 221 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 280

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
           ++L  M ++G      +Y  ++ A  + G   +AV  +     +D+  + +++ ++    
Sbjct: 281 IVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAY 340

Query: 289 IGLERFNEANFILKEMNKRD 308
           +     N+  FIL E  K +
Sbjct: 341 VE-HGPNDQAFILVEKMKSN 359



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 85/205 (41%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I    K   ++   R+ D M   G   +AIT++ +LS L R  RM E   
Sbjct: 47  LPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSA 106

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M   ++ PD   Y+ L       G+  A   +  K  +  +     T   L+ G C
Sbjct: 107 LLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLC 166

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G+V  A  +L+ +V+ G       Y  ++    + G    A         R IK D  
Sbjct: 167 KDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHI 226

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            + +L + L   ER   A  +L EM
Sbjct: 227 TYNALINGLCKAERITNAQDLLMEM 251



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 11/236 (4%)

Query: 85  VLSDLCR------TLARLD-----KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           +LS LCR      T A LD     K  P    Y  L   L +       L +     + G
Sbjct: 91  LLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNG 150

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
             +   T   +L+ L +  ++  A  +++ +    + P    YN L+  YC  G L    
Sbjct: 151 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 210

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
               +M+   +  D  TY+AL+ G C+A R+  A  LL  M D+G +    T+  ++ A 
Sbjct: 211 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 270

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            R G   +    +       +K +   +GS+ +      +  EA  IL +M  +D+
Sbjct: 271 GRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDV 326



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 77/169 (45%)

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + R + R     P   +Y+ +I  + +  +  +A+ V D M E     + IT++ ++   
Sbjct: 1   MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 60

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +G  +E  + L + M    + P+   YN LL+  C  G +  TS +L +M  +K+  D 
Sbjct: 61  IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 120

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            TY  L  G  R G  +    L  + + +G ++   T + ++  L + G
Sbjct: 121 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDG 169



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 17/205 (8%)

Query: 19  VTRSFTKSGAFPDE-------------PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC 65
           +  +F K+G  P+              P +  Y+ +++A       +    L+ K   + 
Sbjct: 301 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 360

Query: 66  CFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122
              +  T+N +      ++ +S   ++  +L+   +  P   +Y+TLI   C    ID+A
Sbjct: 361 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSN-HRLIPDAVSYNTLISACCYRGNIDKA 419

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           L +   M + G   +  T+H ++S L    R+ E   L + M +  V P    +N ++ A
Sbjct: 420 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEA 479

Query: 183 YCFKGNLTATSGVLKKMEEEKLGAD 207
           Y   GN      + K+M +++   D
Sbjct: 480 YSKYGNEIKAEDLRKEMLQKRNNHD 504


>gi|224099199|ref|XP_002311400.1| predicted protein [Populus trichocarpa]
 gi|222851220|gb|EEE88767.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 3/218 (1%)

Query: 49  RDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAY 106
           R +E  RYL N+  +D   +   ++N + +     +V++        + D+G  P    +
Sbjct: 279 RGMEGDRYL-NQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRGVSPNLVTF 337

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           +TLI   CK  ++ +A  ++ ++ E G      TF  I+  L R ++ ++A G    M E
Sbjct: 338 NTLISGHCKDGEVHKARELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMVE 397

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             +SP+   YN L+ + C  G++  +  +LK M ++ +  D  +++AL+   CR G+VE+
Sbjct: 398 WGISPNAVTYNILIRSLCLIGDVGRSMKLLKDMRKDGISPDIFSFNALIQSFCRMGKVEK 457

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           A  +   M   G      TY  ++ AL  LG   +A K
Sbjct: 458 AEKMFVSMSTLGLIPNNYTYGALVKALFELGRCDEAKK 495



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 5/184 (2%)

Query: 88  DLCRTLARLDKGFPRK-----SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           D+  T   LDK   R      S Y  LI  L K  +  E  R ++ M +        +++
Sbjct: 244 DVNETCGILDKFIARGAKLGFSFYLALIETLYKAGRGMEGDRYLNQMVKDRLVSDVFSYN 303

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   M +A  + +VM++  VSP+L  +N L++ +C  G +     +L+ + E 
Sbjct: 304 MLIDCFCKANVMNKAVMVFKVMQDRGVSPNLVTFNTLISGHCKDGEVHKARELLQMLLEL 363

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            L  D  T+ +++   CRA + ++A      MV+ G S    TY  ++ +L  +G   ++
Sbjct: 364 GLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAVTYNILIRSLCLIGDVGRS 423

Query: 263 VKFV 266
           +K +
Sbjct: 424 MKLL 427



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P +  Y+ LI  +CK+  +DEALR+V  M   G+  +  T+  ++      KR++E
Sbjct: 83  DNCKPDRFTYNMLIHGVCKIGVVDEALRLVKQMEGFGYSANVYTYTNLIYGFCNAKRVDE 142

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAY--CFKGNLTATSGVLKKMEEEK-LGADARTYDA 213
           A+ + E MK   V+P+      L+     C      A   V+  +E+E  LG  A   D 
Sbjct: 143 AFRVFETMKLRNVNPNEATIRSLVHGVFRCVAPR-EAFELVIDFIEKEPVLGRLA--CDT 199

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           L+          EA  LLR++ + G     ST+   M  LL+
Sbjct: 200 LLCCLSEKCMPREAGALLRKLGERGYLPDSSTFNITMTCLLK 241



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
           GRL   K  +E    +  +   G   S   ++ ++  L +   ++ A+   + M      
Sbjct: 30  GRLGLAKYCEEIFGQISFL---GITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCK 86

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           PD   YN L+   C  G +     ++K+ME     A+  TY  L+ G C A RV+EAF +
Sbjct: 87  PDRFTYNMLIHGVCKIGVVDEALRLVKQMEGFGYSANVYTYTNLIYGFCNAKRVDEAFRV 146

Query: 231 LRRM 234
              M
Sbjct: 147 FETM 150



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 17/133 (12%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           ++DE L  V I + G  GL+              K  EE +G +  +    ++P    YN
Sbjct: 16  RVDEDLLCVLIGSWGRLGLA--------------KYCEEIFGQISFLG---ITPSTRLYN 58

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++ A     +L       ++M  +    D  TY+ L+ G C+ G V+EA  L+++M   
Sbjct: 59  AVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNMLIHGVCKIGVVDEALRLVKQMEGF 118

Query: 238 GQSVLYSTYAHVM 250
           G S    TY +++
Sbjct: 119 GYSANVYTYTNLI 131



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 15/244 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P++  Y+ +++A      L+       + + D C     T+N + +    + V+ +  R 
Sbjct: 52  PSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNMLIHGVCKIGVVDEALRL 111

Query: 93  LARLDKGFPRKS---AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           + +++ GF   +    Y  LI   C  K++DEA RV + M       +  T   ++  + 
Sbjct: 112 VKQME-GFGYSANVYTYTNLIYGFCNAKRVDEAFRVFETMKLRNVNPNEATIRSLVHGVF 170

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDL--TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           R     EA+ L  V+  I   P L   A + LL     K        +L+K+ E     D
Sbjct: 171 RCVAPREAFEL--VIDFIEKEPVLGRLACDTLLCCLSEKCMPREAGALLRKLGERGYLPD 228

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG-------YYA 260
           + T++  +    +   V E   +L + +  G  + +S Y  ++  L + G       Y  
Sbjct: 229 SSTFNITMTCLLKGLDVNETCGILDKFIARGAKLGFSFYLALIETLYKAGRGMEGDRYLN 288

Query: 261 QAVK 264
           Q VK
Sbjct: 289 QMVK 292



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 88/200 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           A DTL+  L +     EA  ++  + E G+   + TF+  ++ L +G  + E  G+++  
Sbjct: 196 ACDTLLCCLSEKCMPREAGALLRKLGERGYLPDSSTFNITMTCLLKGLDVNETCGILDKF 255

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                    + Y  L+      G        L +M +++L +D  +Y+ L+   C+A  +
Sbjct: 256 IARGAKLGFSFYLALIETLYKAGRGMEGDRYLNQMVKDRLVSDVFSYNMLIDCFCKANVM 315

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +A ++ + M D G S    T+  ++    + G   +A + + +     +K D   F S+
Sbjct: 316 NKAVMVFKVMQDRGVSPNLVTFNTLISGHCKDGEVHKARELLQMLLELGLKPDIFTFSSI 375

Query: 285 GSKLIGLERFNEANFILKEM 304
              L   ++F++A     EM
Sbjct: 376 IDCLCRAQQFDDALGCFSEM 395


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 123/291 (42%), Gaps = 23/291 (7%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ ++N    E  ++  R +LN+          +++ F  +T +  +VL  LC  
Sbjct: 205 PNIVTYNVIINGMCREDRVDDARQILNR---------LSSYGFQPDTVSYTTVLKGLCAA 255

Query: 93  LARLD-----------KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
               D              P +  +D L+   C+   ++ A+ V+D M+E G   +    
Sbjct: 256 KRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLC 315

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + +++ + +  R+++A+  +  M     SPD  +Y  +L   C  G       +L +M  
Sbjct: 316 NIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVR 375

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           +    +  T++  +   C+ G +++A +L+ +M + G SV   TY  ++      G    
Sbjct: 376 KNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDS 435

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
           A++          + +T  + +L + L   ER + A  +L EM + D  + 
Sbjct: 436 ALELF---NSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLN 483



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 5/228 (2%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           ++LS+L D+ R   +     P    Y  L+  +CK     +A++V+D M   G   + +T
Sbjct: 155 DALSLLDDMLRRECQ-----PSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVT 209

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ I++ + R  R+++A  ++  +      PD  +Y  +L   C          +  +M 
Sbjct: 210 YNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMV 269

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E     +  T+D LV   CR G VE A  +L RM + G +   +    V+ ++ + G   
Sbjct: 270 ENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVD 329

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
            A +F+   G      DT  + ++   L    R+ +A  +L EM +++
Sbjct: 330 DAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKN 377



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 3/198 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + +I  +CK  ++D+A   ++ M   G     I++  +L  L R  R E+A  L+  M  
Sbjct: 316 NIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVR 375

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
               P+   +N  +   C KG +     ++++M E        TY+ALV G C  GRV+ 
Sbjct: 376 KNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDS 435

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  L   +  +  ++ Y+T    +    RL   A+ +  +M     D  L+   F  L S
Sbjct: 436 ALELFNSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMM---QNDCPLNVVTFNVLVS 492

Query: 287 KLIGLERFNEANFILKEM 304
                    EA  ++++M
Sbjct: 493 FFCQKGFVEEAIELVQQM 510



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+  LC  +++D A  ++  M +    L+ +TF+ ++S   +   +EEA  L
Sbjct: 447 PNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIEL 506

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E   +P+L  +N LL       N      +L  +  + +  D  TY ++V    R
Sbjct: 507 VQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSR 566

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             R+EEA  +   + D G       Y  ++ AL +     +A+ F
Sbjct: 567 EDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDF 611



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY+TL+   C+  ++D A R++  M        A T+ P++  L    R+ +A  L++ M
Sbjct: 107 AYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCDRGRVGDALSLLDDM 163

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P +  Y  LL A C          VL +M  +    +  TY+ ++ G CR  RV
Sbjct: 164 LRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRV 223

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           ++A  +L R+   G      +Y  V+  L
Sbjct: 224 DDARQILNRLSSYGFQPDTVSYTTVLKGL 252



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 7/166 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S    LI R      + EA R+V+     G          ++  L R  R  +A  +
Sbjct: 37  PASSRLRRLIAR----DDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARV 92

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +   +      D+ AYN L+  YC  G L A   ++  M    +  DA TY  L+ G C 
Sbjct: 93  LRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPLIRGLCD 149

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            GRV +A  LL  M+         TY  ++ A+ +   + QA+K +
Sbjct: 150 RGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVL 195



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 3/196 (1%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           LI  LC+  +  +A RV+      G  +    ++ +++   R  R++ A  L+  M    
Sbjct: 76  LIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMP--- 132

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V PD   Y  L+   C +G +     +L  M   +      TY  L+   C++    +A 
Sbjct: 133 VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAM 192

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            +L  M   G +    TY  ++  + R      A + +        + DT  + ++   L
Sbjct: 193 KVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGL 252

Query: 289 IGLERFNEANFILKEM 304
              +R+ +   +  EM
Sbjct: 253 CAAKRWEDVEVLFCEM 268


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 72/138 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK  +++EA +++  M + GF  S   +  +LS L R  R+++A+ L
Sbjct: 343 PNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFEL 402

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M  I     + + N LL     +G++      LK+M +  +  D  TYD LV+G C 
Sbjct: 403 YKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCW 462

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G+ ++A  L+  +V DG
Sbjct: 463 QGKADQARKLVEELVRDG 480



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 26/244 (10%)

Query: 13  IPQSVLVTRSFTKSGAFPDE-------------PTSAYYDDLVNAAGHERDLETVRYLLN 59
           +    L+ R F KSG+F                P +  Y++L++       L      L 
Sbjct: 29  VQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAESYLK 88

Query: 60  KRARDCCFNTANTFNFIT-------NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGR 112
           +  + C  N   ++N I        N E +L+ L    R +  L    P   AY +++  
Sbjct: 89  RMPQHCAPNVV-SYNIIIDGYCKARNIEKALAFL----REMEELGHP-PTPHAYSSIVQS 142

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
            CK   + +A+ V   M   G     + F+ +LS L R +++ EA  L   M      PD
Sbjct: 143 FCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPD 202

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  YN ++   C    L     +L++M++E +     TY  L+   C+  R+++A+ +  
Sbjct: 203 VVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFE 262

Query: 233 RMVD 236
           +M +
Sbjct: 263 KMAE 266



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 1/188 (0%)

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
           +D M E G   +AI ++ ++S L +   + EA   ++ M +   +P++ +YN ++  YC 
Sbjct: 52  LDRMLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCK 110

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
             N+      L++MEE         Y ++V   C+ G V +A  +   M   G       
Sbjct: 111 ARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVN 170

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           +  ++  L R     +A +       R  K D   + ++ + L   ++ +EA F+L+ M 
Sbjct: 171 FNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMK 230

Query: 306 KRDLKMGF 313
           + D+   F
Sbjct: 231 QEDVSPTF 238



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 3/217 (1%)

Query: 90  CRTLAR-LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           C  L R L+ G FP    Y+ LI  LCK   + EA   +  M +     + ++++ I+  
Sbjct: 49  CSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQHC-APNVVSYNIIIDG 107

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             + + +E+A   +  M+E+   P   AY+ ++ ++C  GN++    V  +M  +    D
Sbjct: 108 YCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPD 167

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
              ++ L+ G  RA ++ EA  L R M   G      TY  ++  L +     +AV  + 
Sbjct: 168 IVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLE 227

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                D+      + +L   L    R  +A  + ++M
Sbjct: 228 RMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKM 264



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 95/208 (45%), Gaps = 2/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LCK KK+DEA+ +++ M +     + +T+  ++  L +  R+++A+ +
Sbjct: 201 PDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEV 260

Query: 161 MEVMKEIRVSPDLTAYNYLL--TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            E M E        AY+ L+     C          + ++M    +     TY+ L+ G 
Sbjct: 261 FEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGL 320

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
               ++++A  L   M+D   +    TY  ++ +L +     +A K +     +      
Sbjct: 321 LSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSL 380

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
           +++  L S+L    R ++A  + KEM++
Sbjct: 381 KIWEVLLSRLARAGRLDDAFELYKEMSR 408



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 113/260 (43%), Gaps = 27/260 (10%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           RS    G  PD  T   Y+ ++      + L+   +LL +  ++   + + TF  +T T 
Sbjct: 192 RSMNSRGCKPDVVT---YNTMIAGLCKWKKLDEAVFLLERMKQE---DVSPTF--VTYT- 242

Query: 81  NSLSVLSDLCRTLARLDKGFP------------RKSAYDTLI--GRLCKLKKIDEALRVV 126
              +++  LC+  ARL + +              + AY  LI    LCK ++  EA  + 
Sbjct: 243 ---TLIDHLCK-FARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMF 298

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   G   + +T++ +L  L    ++++A  L   M +   +P++  Y  L+++ C  
Sbjct: 299 QEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKT 358

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             +     +L  M ++      + ++ L+    RAGR+++AF L + M       L  + 
Sbjct: 359 DQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSS 418

Query: 247 AHVMGALLRLGYYAQAVKFV 266
             ++  +LR G   +A  F+
Sbjct: 419 NILLDGILRRGSVDEAKDFL 438


>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
 gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
          Length = 849

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 1/207 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P   +Y   +  L K+ K+D AL +   +   G     ++ + ++    +  ++ E
Sbjct: 589 EGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNE 648

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+  +  M+   + P   +YN L+  +C  G++      L +M EE       +Y  L+ 
Sbjct: 649 AYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLIN 708

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G C +GR ++A +L   M + G S    TY  ++  L + G   +A+ +      +++K 
Sbjct: 709 GCCNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEMKP 768

Query: 277 DTELFGSLGSKLIGLERFNEANFILKE 303
           D+ +  +L    I    F+ A  ILKE
Sbjct: 769 DSYVSVALIDAFISKHNFSMAFNILKE 795



 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 58/139 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ LI   CK   ID+A+  +  M E     + I++  +++      R ++A  L
Sbjct: 663 PSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKIL 722

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+E   SP+   Y  ++   C  G           MEE+++  D+    AL+     
Sbjct: 723 WNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEMKPDSYVSVALIDAFIS 782

Query: 221 AGRVEEAFVLLRRMVDDGQ 239
                 AF +L+  ++ G 
Sbjct: 783 KHNFSMAFNILKETIEKGN 801



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 1/189 (0%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +D   P   +Y+ L+  L K   ID     +  M + G+ +   T  P+L       + +
Sbjct: 186 MDLCIPNNYSYNCLLEILSKTNSIDSIENRLMEMKDFGWEVDKYTLTPVLMAYCNAGKFD 245

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  +   M E R   D   ++ L  A+   G +  T   + +ME++ L  + +T+ AL+
Sbjct: 246 KALIVFNDMHE-RGWVDGYVFSILALAFSKWGEVDRTMQFIDRMEDQNLMLNGKTFYALI 304

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G  +  R + A  LL +M+  G ++  S Y  ++G L +   + +A+          I 
Sbjct: 305 HGFVKESREDMALKLLEKMLKLGFTLDVSIYDVLIGGLCKKRAFEKAMALFFKMKMLGIT 364

Query: 276 LDTELFGSL 284
            D ++   L
Sbjct: 365 PDVQILAKL 373



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           I  H +L   ++  + + A  L E M ++    D   YN L+ A C    L  +  +L+ 
Sbjct: 457 IVIHGLLKTTSKLDQ-DAALSLFEDMVQLGCERDQLLYNNLIDALCKSDRLKESYKLLRD 515

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           ME+ +L     TY+++    CR      A  LLR M   G          ++  L + G 
Sbjct: 516 MEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPWIKHSTLLVKQLCKNGR 575

Query: 259 YAQAVKFV--MVCGG 271
             +A  F+  MVC G
Sbjct: 576 AIEASNFLADMVCEG 590



 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%)

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           LC +    +   P   +Y TLI   C   + D+A  + + M E G   + IT+  I+  L
Sbjct: 686 LCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGL 745

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +  + +EA      M+E  + PD      L+ A+  K N +    +LK+  E+
Sbjct: 746 CKCGKPDEALVYYHSMEEKEMKPDSYVSVALIDAFISKHNFSMAFNILKETIEK 799


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 8/228 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSA 138
           E  L+    L RT  + DK     +A +T++  LC  K+ D+A++V+   M E G    A
Sbjct: 25  ELGLAFFGRLLRTGLKADK-----TAANTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDA 79

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
            ++  +L  L    R ++A  L+ +M  +E   SPD+  YN ++  +  +G +     + 
Sbjct: 80  FSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLY 139

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            +M ++    D  T+++++   C+A  V+ A +LLR+MVD+G      TY  ++     L
Sbjct: 140 HEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTL 199

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           G + +A K      GR +  D   + S    L    R  EA  I   M
Sbjct: 200 GRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSM 247



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 95/204 (46%), Gaps = 2/204 (0%)

Query: 96  LDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           ++ G PR +   +++++  +CK  ++ +A  + D++ + G     I F+ ++        
Sbjct: 388 MNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGE 447

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M +A+ +++ M    + PD   YN L+  Y   G +     + ++M ++K+     TY+ 
Sbjct: 448 MGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNI 507

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++ G  RAGR   A  +L  M+  G +V   TY  ++  L R     +A+         +
Sbjct: 508 ILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMN 567

Query: 274 IKLDTELFGSLGSKLIGLERFNEA 297
           +K +     ++ + +  ++R  EA
Sbjct: 568 VKFNITTLNTMINSMYTVQRREEA 591



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 11/221 (4%)

Query: 75  FITNTENSLSVLSDLCRTLA----------RLDKGFP-RKSAYDTLIGRLCKLKKIDEAL 123
           F+ +     S+++ LC+  A           +D G P  K  Y ++I     L + +EA 
Sbjct: 147 FVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEAT 206

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           ++   M   G     ++++  +  L +  R +EA  +   M      P++  Y  LL  Y
Sbjct: 207 KMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGY 266

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
             +G           M+ + + A+   +  L+    + G ++EA ++L  M   G S   
Sbjct: 267 ATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDV 326

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            TY+ ++ AL R+G  A AV       G  ++ +T ++ SL
Sbjct: 327 FTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSL 367



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 124/312 (39%), Gaps = 24/312 (7%)

Query: 3   LLRKLPTKFLIPQSVLVTR---SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN 59
           + R++  + LIP  V       S  K G    E    +Y   + A GH  ++ T   LL+
Sbjct: 208 MFREMTGRGLIPDIVSWNSFMDSLCKHGR-SKEAAEIFYS--MAAKGHRPNIVTYGILLH 264

Query: 60  KRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKI 119
             A + CF  A+  +F    +    V + L  T+               LI    K   +
Sbjct: 265 GYATEGCF--ADMMSFFNTMKGDGIVANCLVFTI---------------LIDAYAKRGMM 307

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           DEA+ ++  M   G      T+  ++S L R  R+ +A      M    V P+   Y+ L
Sbjct: 308 DEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSL 367

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLG-ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +  +C  G+L     ++ +M    +   +   ++++V   C+ GRV +A  +   + D G
Sbjct: 368 IQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIG 427

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
           +      +  ++     +G   +A   +       I  DT  + +L +      R ++  
Sbjct: 428 ERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGL 487

Query: 299 FILKEMNKRDLK 310
            + +EM+ + +K
Sbjct: 488 NLFREMSDKKIK 499



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 106/285 (37%), Gaps = 49/285 (17%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLN------KRARDCCFNT-ANTFNFITNTENSLSV 85
           P  A+++ +V++   E  +    ++ +      +R+    FNT  + +  +     + SV
Sbjct: 395 PNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSV 454

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           L       A +  G  P    Y+TL+    K  +ID+ L +   M++     + +T++ I
Sbjct: 455 LD------AMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNII 508

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC-------------------F 185
           L  L R  R   A  ++  M     +  L  YN +L   C                    
Sbjct: 509 LDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNV 568

Query: 186 KGNLTATSGVLKKM------EEEK----------LGADARTYDALVLGACRAGRVEEAFV 229
           K N+T  + ++  M      EE K          L  +A TY  ++    + G VEEA  
Sbjct: 569 KFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADN 628

Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   M   G +         +  LL  G   +A  ++    G+ I
Sbjct: 629 MFSSMEKSGCAPCSRLLNDTIRTLLEKGEIVKAGNYMSKVDGKSI 673


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 2/237 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ L++       +++   L+ +     C    NT+N + +       + ++ R
Sbjct: 7   EPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNR 66

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               +   F  P    Y  LIG  CKL +I+ A  + D M +       +TF  ++    
Sbjct: 67  LFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYC 126

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               +++A  L+E +     SPD+  Y  L+  +C    +     VLK+M + +   +  
Sbjct: 127 NAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVV 186

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            Y AL+   C AG+   A+ LL  MV +G      TY  ++G     G   +A K +
Sbjct: 187 IYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKML 243



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 5/156 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+   CK+K++ EA RV+  MA+G    + + +  ++       +   A+ L
Sbjct: 148 PDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKL 207

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME-EEKLGADARTYDALVLGAC 219
           +E M    V P+   Y  L+  +C  G+L     +L+++E  E   AD   Y  ++ G C
Sbjct: 208 LEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLC 267

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           R GR+  A  LL  +   G    +  Y     AL+R
Sbjct: 268 RTGRMSAALELLEAIKQSGTPPRHDIYV----ALIR 299



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 114/258 (44%), Gaps = 8/258 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +  ++L+    T +G  PD  T   Y+ L++       +  V  L  +     C     T
Sbjct: 26  VDSTLLLMEEMTATGCLPDINT---YNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDVIT 82

Query: 73  FNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           ++ +      L  ++  C     + K    P    + TL+   C    +D+A R+++ + 
Sbjct: 83  YSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIV 142

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
                    T+  ++    + KRM EA  +++ M +    P++  Y  L+ A+C  G  T
Sbjct: 143 ASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPT 202

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV--DDGQSVLYSTYAH 248
               +L++M    +  +A TY +L+ G C  G +EEA  +L R+   ++ ++ +++ Y  
Sbjct: 203 VAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFA-YRV 261

Query: 249 VMGALLRLGYYAQAVKFV 266
           +M  L R G  + A++ +
Sbjct: 262 MMDGLCRTGRMSAALELL 279



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 71/182 (39%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   + +T++ ++        ++    LME M      PD+  YN L+   C  G 
Sbjct: 1   MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGR 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +   + +  +M+ +    D  TY  L+ G C+  R+  A  L   M+         T+  
Sbjct: 61  VPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPT 120

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++      G    A + +      D   D   + SL      ++R  EA+ +LK M K +
Sbjct: 121 LVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGE 180

Query: 309 LK 310
            +
Sbjct: 181 CQ 182


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 91/210 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y+TL+   CKL    +ALR+   M   G     +TF  ++  L +   M+ A  
Sbjct: 249 YPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARN 308

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M +  V+P++  YN L+ AYC  G+++    +  ++E  ++  D  TY  L+ G C
Sbjct: 309 LFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLC 368

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
              R EEA  +  +M  +G      TY  ++    + G   +A++         ++ +  
Sbjct: 369 SVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVI 428

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            F +L      +     A  I  EM  + L
Sbjct: 429 TFSTLIDGYCKIRNLQAAMGIYSEMVIKSL 458



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 84/165 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI  LC + + +EA  + + M + G   +++T++ ++    +  +M++A  +
Sbjct: 355 PDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEI 414

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V P++  ++ L+  YC   NL A  G+  +M  + L  D  TY A++ G C+
Sbjct: 415 CSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCK 474

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G ++EA  L   M+D+G +    T + ++  L + G  + A++ 
Sbjct: 475 YGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALEL 519



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 90/209 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   C+   +  A  + D M   G   + I +  ++  L    ++EEA  +
Sbjct: 180 PSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESM 239

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+E+ V P++  YN L+  YC   N      + + M  E L  D  T+  L+ G C+
Sbjct: 240 HRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCK 299

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G ++ A  L   M+    +   + Y  ++ A  ++G  ++A+   +     ++  D   
Sbjct: 300 FGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFT 359

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   L  + R  EA  I ++M K  +
Sbjct: 360 YSILIRGLCSVSRTEEAGNIFEKMTKEGI 388



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 24/302 (7%)

Query: 2   SLLRKLPTKFLIPQSVLVT----RSFTKSGAF---PDEPTSAYYDDLVNAAGHERDLETV 54
           ++L+ +    L P S++ T    RS  K+  F     E     Y  +++     + L   
Sbjct: 18  TMLQVVSLSSLTPDSLITTVLNCRSPWKALEFFNAAPEKNIQLYSAIIHVLVGSKLLSHA 77

Query: 55  RYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLC 114
           RYLLN   ++           +  +             L+RL       + Y  LI  LC
Sbjct: 78  RYLLNDLVQN-----------LVKSHKPYHACQLAFSELSRLKSSKFTPNVYGELIIVLC 126

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           K++ ++EAL    +  + G  L+    + +L VL +  R E  W + E M    +SP + 
Sbjct: 127 KMELVEEAL---SMYHKVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVI 183

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            +  L+   C +G+L     +  +M  + +      Y  L+ G C   ++EEA  + R M
Sbjct: 184 TFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAM 243

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
            + G      TY  +M    +L    QA++      G  +  D   FG L   + GL +F
Sbjct: 244 REVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGIL---IDGLCKF 300

Query: 295 NE 296
            E
Sbjct: 301 GE 302



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 105/258 (40%), Gaps = 15/258 (5%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
           F     F   P  A Y+ L++A     D+     L  +  R        T++ +     S
Sbjct: 310 FVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCS 369

Query: 83  LSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +S   +      ++ K         Y++LI   CK  K+D+AL +   M E G   + IT
Sbjct: 370 VSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVIT 429

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    + + ++ A G+   M    +SPD+  Y  ++  +C  G++     +   M 
Sbjct: 430 FSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDML 489

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLL---------RRMVDDGQS----VLYSTYA 247
           +  +  +  T   L+ G C+ G++ +A  L          R  VD G S      +  Y 
Sbjct: 490 DNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYT 549

Query: 248 HVMGALLRLGYYAQAVKF 265
            ++  L + G +++AVK 
Sbjct: 550 ALIHGLCQDGQFSKAVKL 567


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 104/228 (45%), Gaps = 2/228 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  L++A       +    + ++     C  + + +  + N   S+  L +  +
Sbjct: 291 KPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALK 350

Query: 92  TLA-RLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                 + GFP +    + +IG  C+  +   A ++VD M + G G +  T+  IL+ L 
Sbjct: 351 YFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLI 410

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + +++EEA+ L + M+     P+L  Y  ++  +C    +     V K+M+E+ +     
Sbjct: 411 KSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMH 470

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            + AL+ G C   R+EEA V  + M+D G       ++++  AL+  G
Sbjct: 471 MFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGG 518



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 109/283 (38%), Gaps = 26/283 (9%)

Query: 38  YDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL 96
           + +L+ A G  +    V  L+   R R C   + +TF  I         + +   T  ++
Sbjct: 157 FHNLIEALGKIKQFRLVWSLVEAMRCRSCL--SKDTFKIIVRRYARARKVKEAVETFEKM 214

Query: 97  DKGFPRK---SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
              F  K   S Y+ LI  L K K++ +A  +   M   G       F P L   T    
Sbjct: 215 S-SFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKG------RFIPDLKTYTV--- 264

Query: 154 MEEAWG----------LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           + E WG          + + M +  + PD+ AY  L++A+C  G       V  +MEE  
Sbjct: 265 LMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESG 324

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
                  Y  L+ G     R++EA    +   + G  +   T   V+GA  R   +  A 
Sbjct: 325 CMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAF 384

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           K V       I  +T  +  + + LI  E+  EA  + + M +
Sbjct: 385 KMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMER 427


>gi|359476071|ref|XP_003631786.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 629

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 19/253 (7%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN------TFNFITNTENSLSVL 86
           PT+  Y+ ++N    E  ++    L +       F  AN      +FN I +        
Sbjct: 323 PTNVSYNTILNGFCRENHIDEALQLFDH------FEWANNSPDVVSFNTILSAACKQGNS 376

Query: 87  SDLCRTLARLD-KGFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           S + R L R++ +G        T LI   C + KI E L +++ M   G   + +TF+ +
Sbjct: 377 SMIRRVLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNML 436

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L  L +   +  A  +    +     P+ T+YN L+ A   +GN +    +L+ M   +L
Sbjct: 437 LDKLCKNGLLGTAHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRL 496

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             DA TY + + G C+ G++  A  L  +M++ G +   + Y  ++ A+ + G +   V 
Sbjct: 497 KPDAVTYGSFIKGLCKEGKISVAIQLRDQMLESGLTPTITIYNTILAAMFQRGKFWDIVS 556

Query: 265 FVMVCGGRDIKLD 277
            +     +D+ +D
Sbjct: 557 LL-----KDMTMD 564



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+     LC+  K  EAL ++  M E G   + ++++ IL+   R   ++EA  L + 
Sbjct: 291 AVYNIYFHCLCRENKSGEALSLLQSMVEKGLVPTNVSYNTILNGFCRENHIDEALQLFDH 350

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
            +    SPD+ ++N +L+A C +GN +    VL +ME E +  +  +   L+   C  G+
Sbjct: 351 FEWANNSPDVVSFNTILSAACKQGNSSMIRRVLYRMEYEGVKLNVVSSTCLIQYFCAIGK 410

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + E   LL  M+ +G +    T+  ++  L + G    A
Sbjct: 411 ISECLELLESMIRNGLNPTVVTFNMLLDKLCKNGLLGTA 449



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 6/226 (2%)

Query: 29  FPDEPTSAYYDDLVNAAGHERDLETV-RYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
           FP EPT      +++ AG  R+   V R LL K    C  +       +     S + L+
Sbjct: 77  FPTEPTLNLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALA 136

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            L  +L ++       ++Y  L+    K    +EA  ++D M   G   + IT+  I+  
Sbjct: 137 -LLYSLKKMG-AVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKF 194

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    R+ +A  ++  M +    PD+  YN +L     +        +L+ ++++++  D
Sbjct: 195 LCDEGRIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPD 254

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV---LYSTYAHVM 250
           + TY AL  G  +  +V  A  LL  ++  G +V   +Y+ Y H +
Sbjct: 255 SFTYAALTGGLLKRDQVRVANKLLLYVISAGCTVDVAVYNIYFHCL 300



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 88/202 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP +   + LI  L K     EA  V  ++   G    A +++PIL  L +  +   A  
Sbjct: 77  FPTEPTLNLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALA 136

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  +K++    +  +Y  L+  +  +G       +L +M+ +    +  TY  +V   C
Sbjct: 137 LLYSLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLC 196

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             GR+ +A  +L +M  +G      TY  ++  L     Y +  + + V   ++I  D+ 
Sbjct: 197 DEGRIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSF 256

Query: 280 LFGSLGSKLIGLERFNEANFIL 301
            + +L   L+  ++   AN +L
Sbjct: 257 TYAALTGGLLKRDQVRVANKLL 278



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 92/212 (43%), Gaps = 1/212 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P  ++   ++ +   L  + +++ V + M    +  +  T + ++S+L++     EA
Sbjct: 40  GFLPSFTSLLKILKKWLGLGSLVDSMSVFEFMLRLEYFPTEPTLNLLISMLSKAGMAREA 99

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             +  V+          +YN +L A C  G       +L  +++     +A +Y ALV G
Sbjct: 100 HFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALALLYSLKKMGAVHNAASYTALVYG 159

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             + G  EEAF +L  M  DG      TY  ++  L   G    A+  +   G      D
Sbjct: 160 FSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRIGDALDILGKMGKEGCDPD 219

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              +  +  +L   +R+ E   +L+ ++++++
Sbjct: 220 IVTYNVILRELFHQDRYVEIGELLQVIDQKEI 251



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 57/138 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L G L K  ++  A +++  +   G  +    ++     L R  +  EA  L
Sbjct: 253 PDSFTYAALTGGLLKRDQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSL 312

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E  + P   +YN +L  +C + ++     +    E      D  +++ ++  AC+
Sbjct: 313 LQSMVEKGLVPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTILSAACK 372

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G       +L RM  +G
Sbjct: 373 QGNSSMIRRVLYRMEYEG 390


>gi|357144033|ref|XP_003573143.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g38730-like [Brachypodium distachyon]
          Length = 599

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 75/147 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+   C++  + EA+++ + M  GG      T++ I+  L    +M+E  GL
Sbjct: 284 PDTVTYTTLVDGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGL 343

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M   +V  D    N L+ +Y  +G++T+   V K+M E  L  D  TY AL+ G C+
Sbjct: 344 LSEMDGRKVQADHVTCNTLINSYAKRGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCK 403

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           A  ++EA   L  M+  G S  YS ++
Sbjct: 404 AKELDEAKEALFEMMGRGFSPNYSVFS 430



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 4/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A   L+  L + +    A +V + M   G  ++   ++ +L V  + +    A GL
Sbjct: 144 PDAHACTALLTALARARMTATAHKVFNEMGRAGVAMNTHVYNAMLHVCLKARDALRAEGL 203

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M    V  D  ++N ++  Y  KG       V ++M++E +  D  T++ ++ G C+
Sbjct: 204 MTRMDAAGVPLDRFSFNTVIALYVRKGMQYEAMCVRERMQDEGVEPDIVTWNTVIHGLCK 263

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDT 278
            GR++EA  L   M+         TY  ++    R+G   +AVK    M  GG    + T
Sbjct: 264 EGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDGYCRIGDVGEAVKLREEMEAGGMVPGVAT 323

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + ++  KL    +  E N +L EM+ R ++
Sbjct: 324 --YNAIIRKLCEDGKMKEVNGLLSEMDGRKVQ 353



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 3/163 (1%)

Query: 118 KIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           K  +ALR   +M      G  L   +F+ ++++  R     EA  + E M++  V PD+ 
Sbjct: 193 KARDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVRKGMQYEAMCVRERMQDEGVEPDIV 252

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            +N ++   C +G +   + +   M    +  D  TY  LV G CR G V EA  L   M
Sbjct: 253 TWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDGYCRIGDVGEAVKLREEM 312

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
              G     +TY  ++  L   G   +    +    GR ++ D
Sbjct: 313 EAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQAD 355



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 77/178 (43%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           +TLI    K   +  A +V   M E G  L   T+  ++    + K ++EA   +  M  
Sbjct: 360 NTLINSYAKRGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKELDEAKEALFEMMG 419

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
              SP+ + +++L+  +C K N  A   +  ++ +  L  D   Y +L+   C+ G V+ 
Sbjct: 420 RGFSPNYSVFSWLVDGFCKKNNTDAVLLIPDELIKRGLPPDKSVYRSLIRRLCKKGLVDL 479

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           A  +L +M   G  V    YA +  A L  G  A A   +     + + +  +++  L
Sbjct: 480 AQKVLHQMQGKGLEVDCLVYATLAYAHLTAGKVAAASDILNEMARKQMSVTPQIYNCL 537


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 3/151 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y T +  LC+ K++  A   + ++ + G+  ++  F+ ++       ++ +A  +
Sbjct: 246 PNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEV 305

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + MK+    PD+ +Y+ L+   C +G++     +L +M    +  +  +Y +L+ G CR
Sbjct: 306 FDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCR 365

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           AGRVE AF L +R+ D G     ++YS   H
Sbjct: 366 AGRVELAFELFKRLKDQGFKHDHIVYSIVLH 396



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 2/188 (1%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+  I N    ++  +D+    A + K G+ P    Y  +I    K   + EA R+   M
Sbjct: 495 TYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKM 554

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            + G   +  T+  +++ L    ++ E   L + M    ++PD   Y  L+  YC + N+
Sbjct: 555 VDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNM 614

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            A   + ++ME E L AD+  Y  L+ G  +   ++ A + +  M++ G +    TY  +
Sbjct: 615 KAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDL 674

Query: 250 MGALLRLG 257
           +    ++G
Sbjct: 675 IIGYFKIG 682



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 85/209 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   C+ +++ EAL V ++M   G   + +T   ++   +    + EA+  
Sbjct: 421 PDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLF 480

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ +++  V P+L  Y  ++   C         G+   M +     D   Y  ++ G  +
Sbjct: 481 LDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVK 540

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A  ++EAF L  +MVD+G      TY  ++  L       + +       G  +  D  L
Sbjct: 541 ALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRIL 600

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + SL +          A  I +EM    L
Sbjct: 601 YTSLIACYCKRSNMKAALEIFREMETEGL 629



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 65/156 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y +L+  LC+  +++ A  +   + + GF    I +  +L    +   +E  + L
Sbjct: 351 PNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDL 410

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PD   Y+ L+ AYC    L     V + M  + +  +  T   LV G   
Sbjct: 411 WNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSN 470

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            G + EAF+ L ++   G      TY  ++  L ++
Sbjct: 471 EGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKV 506


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 2/210 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +GF P    +  +I   CK +KID+ALRV  IM      L    +  ++SVL +  R+
Sbjct: 384 IARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRL 443

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA   +  +    +SP++  Y  ++ AYC  G + A   V K  E E    +A TY +L
Sbjct: 444 KEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSL 503

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G  +  ++ +A  L+ +M +DG +    TY  ++    +   +  A +   +     +
Sbjct: 504 IYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGL 563

Query: 275 KLDTELFGSLGSKLIGLERFNEA-NFILKE 303
             D + +  L   L    R  EA +F++K+
Sbjct: 564 TPDEQAYNVLTDALCKSGRAEEAYSFLVKK 593



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 1/200 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI  LC+ + + EAL ++ +M + G   +  T+  ++  L +  R+ +A  L++ M
Sbjct: 255 SYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEM 314

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V P +  YN ++  YC  G L    G+   ME      D  TY++L+ G C  G+ 
Sbjct: 315 PRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLC-GGKP 373

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA  LL   +  G S    T+ +++    +      A++   +      KLD + +G L
Sbjct: 374 DEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVL 433

Query: 285 GSKLIGLERFNEANFILKEM 304
            S LI   R  EA   L E+
Sbjct: 434 ISVLIKKHRLKEAKDTLNEI 453



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 13/258 (5%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA---RDCCFNTANTFNFITNTEN 81
           ++G  PDE       D +  +G  R  E   +L+ K     +    +  + F+   NTE 
Sbjct: 560 QNGLTPDEQAYNVLTDALCKSG--RAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEF 617

Query: 82  SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           + +++  +     + D        Y  L+  LCK KK++EAL ++D M   G   + + +
Sbjct: 618 AAALIEKMVNEGCKADS-----HTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAY 672

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             I+S + +  + + A  +   M      P    Y   +++YC  G +     ++ +ME 
Sbjct: 673 TIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMER 732

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             +  D  TY+  + G    G ++ AF  L+RM+D      Y TY  ++   L++     
Sbjct: 733 NGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMSL--A 790

Query: 262 AVKFVMVCGGRD-IKLDT 278
              +V   G  + IKLDT
Sbjct: 791 NAHYVDTSGMWNWIKLDT 808



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 7/208 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK  + D A R+ ++M + G       ++ +   L +  R EEA+  
Sbjct: 530 PGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSF 589

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + V K + ++     Y  L+  +   GN    + +++KM  E   AD+ TY  L+   C+
Sbjct: 590 L-VKKGVVLTK--VTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCK 646

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
             ++ EA  +L +M   G       Y  ++  +++ G +  A      M+  G   K   
Sbjct: 647 QKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGH--KPSA 704

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
             +    S    + R  EA  ++ EM +
Sbjct: 705 ITYTVFISSYCKIGRIEEAGHLIGEMER 732



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 119/302 (39%), Gaps = 28/302 (9%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTL 93
           T   Y  LV+      + E    L+ K   + C   ++T++ +     +L     L   L
Sbjct: 598 TKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQ---ALCKQKKLNEAL 654

Query: 94  ARLDKGFPRKS-----AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + LD+   R       AY  +I  + K  K D A  + + M   G   SAIT+   +S  
Sbjct: 655 SILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSY 714

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +  R+EEA  L+  M+   V+PD+  YN  +      G +      LK+M +     + 
Sbjct: 715 CKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNY 774

Query: 209 RTYDALV----------------LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            TY  L+                 G     +++  + LL RMV  G +    TY+ ++  
Sbjct: 775 WTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAG 834

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
             +     +A   +    G+DI  + E++  L      ++ F +A   +  M    ++ G
Sbjct: 835 FCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNM----IECG 890

Query: 313 FK 314
           F+
Sbjct: 891 FQ 892



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 75/191 (39%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I   CK   +  A R   ++ E G  +   T + +L    R   + +A  
Sbjct: 180 LPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACW 239

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+ +M  +    +  +Y  L+   C    +     +L  M ++    +  TY  L+ G C
Sbjct: 240 LLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLC 299

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GR+ +A VLL  M   G      TY  ++    + G    A+    +  G     D  
Sbjct: 300 KEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDW 359

Query: 280 LFGSLGSKLIG 290
            + SL   L G
Sbjct: 360 TYNSLIHGLCG 370



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 7/136 (5%)

Query: 106 YDTLIGRLCKLKKIDEALR-VVD----IMAEGG--FGLSAITFHPILSVLTRGKRMEEAW 158
           YD L+  +       E +R  VD    I   GG    LS   ++  L  L R    E   
Sbjct: 109 YDKLVVSMISCSGTAEDMREAVDAIQAIRRAGGKRLALSPKCYNLALRSLLRFDMTEHMG 168

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L   + +  + PD   YN ++ AYC +G+L       + + E  +  D  T +AL+LG 
Sbjct: 169 KLYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGY 228

Query: 219 CRAGRVEEAFVLLRRM 234
           CR G + +A  LL  M
Sbjct: 229 CRTGDLRKACWLLMMM 244



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 1/212 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I   CK  ++ +AL +  +M   G      T++ ++  L  GK  +EA  L
Sbjct: 321 PSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCGGKP-DEAEEL 379

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +        SP +  +  ++  YC    +     V   M   K   D + Y  L+    +
Sbjct: 380 LNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIK 439

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R++EA   L  +  +G S     Y  ++ A  ++G    A++   +      + +   
Sbjct: 440 KHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWT 499

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
           + SL   LI  ++ ++A  ++ +M +  +  G
Sbjct: 500 YSSLIYGLIQDQKLHKAMALITKMQEDGITPG 531



 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 61/149 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y ++I   CK  +++EA  ++D M       +   +  ++      K  E+A   
Sbjct: 823 PTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASF 882

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E    P L +Y+YL+T  C +G+      +   + E     +   +  L  G  +
Sbjct: 883 VTNMIECGFQPHLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLK 942

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
           AG V+    LL  M +    +   TY+ V
Sbjct: 943 AGHVDICSQLLSAMENRHCRIDSETYSMV 971


>gi|218191860|gb|EEC74287.1| hypothetical protein OsI_09537 [Oryza sativa Indica Group]
          Length = 689

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A   L+  L K +    A +V D M   G  ++   ++ +L V  +      A  L
Sbjct: 235 PDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESL 294

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M    V  D  ++N ++  YC KG       V ++ME + + AD  T+++L+ G C+
Sbjct: 295 MTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCK 354

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             RV+EA  LLR M   G +  + TY  ++    R G   +AVK         +      
Sbjct: 355 ERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVAT 414

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + ++  KL    +  E N +L EM++R ++
Sbjct: 415 YNAILRKLCEDGKMKEVNVLLNEMDERKVQ 444



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 76/153 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+   C+   ++EA+++   M   G      T++ IL  L    +M+E   L
Sbjct: 375 PDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVL 434

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E +V  D    N L+ AYC +G++T+   V ++M E  L  D  TY ALV G C+
Sbjct: 435 LNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCK 494

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           A  ++EA   L  M+  G S  YS  + ++  L
Sbjct: 495 AKELDEAKEALFEMMGAGFSPNYSVLSWIVDGL 527



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 73/141 (51%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +++LI  LCK +++ EA +++  MA  G     +T+  ++    R   +EEA  L   M+
Sbjct: 345 WNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEME 404

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            + + P +  YN +L   C  G +   + +L +M+E K+ AD  T + L+   C+ G + 
Sbjct: 405 AMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMT 464

Query: 226 EAFVLLRRMVDDGQSVLYSTY 246
            A  + RRM++ G  +   TY
Sbjct: 465 SALKVKRRMMESGLQLDQFTY 485



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 2/214 (0%)

Query: 93  LARLDK-GFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           + R+D  G P  + +++T+I   C+     EA+ V + M   G     +T++ ++  L +
Sbjct: 295 MTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCK 354

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            +R++EA  L+  M    V+PD   Y  L+  YC  G+L     +  +ME   +     T
Sbjct: 355 ERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVAT 414

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+A++   C  G+++E  VLL  M +      + T   ++ A  + G    A+K      
Sbjct: 415 YNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMM 474

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              ++LD   + +L       +  +EA   L EM
Sbjct: 475 ESGLQLDQFTYKALVHGFCKAKELDEAKEALFEM 508



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 100/261 (38%), Gaps = 11/261 (4%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SL+  L  +  + ++  + R    +G  PD  T   Y  LV+      DLE    L  + 
Sbjct: 347 SLIHGLCKERRVKEASQLLREMAMAGVAPDHVT---YTTLVDGYCRAGDLEEAVKLRGEM 403

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYD-----TLIGRLCKL 116
                     T+N I         + ++   L  +D+   RK   D     TLI   CK 
Sbjct: 404 EAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDE---RKVQADHVTCNTLINAYCKR 460

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
             +  AL+V   M E G  L   T+  ++    + K ++EA   +  M     SP+ +  
Sbjct: 461 GDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSVL 520

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           ++++   C K N  A   +  ++ +     D   Y +L+   C+ G ++ A  +   M  
Sbjct: 521 SWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAGNVFNEMQG 580

Query: 237 DGQSVLYSTYAHVMGALLRLG 257
            G       YA +  A L  G
Sbjct: 581 KGLEADCLVYATLACAYLTAG 601



 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 6/159 (3%)

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-GVLKKMEEEKLGAD 207
           ++  R  +A  + + M+   V PD  A + LLTA   K  +TAT+  V  +M    +  +
Sbjct: 213 SQSARPHDALRVFDHMRAREVVPDAHASSALLTALA-KSRMTATARKVFDQMTRAGVAMN 271

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKF 265
              Y+A++    +AG    A  L+ RM   G  +   ++  V+    R G  Y A  V+ 
Sbjct: 272 THVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRE 331

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            M   G  +K D   + SL   L    R  EA+ +L+EM
Sbjct: 332 RMENQG--VKADVVTWNSLIHGLCKERRVKEASQLLREM 368


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 4/217 (1%)

Query: 91  RTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           R L  +  G+   P K  Y T++  L    ++D+A+ +V  M   G  ++A  F+P+L  
Sbjct: 104 RILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGV-VAAEAFNPVLRA 162

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           + R   ++ A  L E M+     P    YN L+      G   A  GV+++ME E +   
Sbjct: 163 MLRAGDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPG 222

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY A+V G  R GRV++A+ +   M  +G +     Y+ V+    + G    A+K   
Sbjct: 223 VMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWE 282

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                 ++ +  L+ ++   L    +  EA  + +EM
Sbjct: 283 AMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREM 319



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 92/213 (43%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +L    P  + Y+ L+  L    +   A+ V+  M   G     +T+  ++  L R  R+
Sbjct: 180 QLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRV 239

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++AW + E M+   ++ +   Y+ ++T +C  G +     V + M    +  +   Y A+
Sbjct: 240 KDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAM 299

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    G++ EA +L R M+D   +    TY  ++    ++G  ++A+       G   
Sbjct: 300 IGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGC 359

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +   +  L + L  + R  +A  + K M  R
Sbjct: 360 MPNAVSYSILINGLCNVGRLKDAMMVWKHMLDR 392



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 65/133 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y T+I   CK  +ID AL+V + M       + + +  ++  L    +M EA  L   M 
Sbjct: 261 YSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMI 320

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + + +P++  Y  ++  Y   G+ +    V ++M       +A +Y  L+ G C  GR++
Sbjct: 321 DSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLK 380

Query: 226 EAFVLLRRMVDDG 238
           +A ++ + M+D G
Sbjct: 381 DAMMVWKHMLDRG 393



 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 54/140 (38%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +IG L    K+ EA  +   M +     + IT+  ++    +      A  +
Sbjct: 291 PNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSV 350

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M      P+  +Y+ L+   C  G L     V K M +     D   Y +++ G C 
Sbjct: 351 WEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCV 410

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
           +G V+    L   M+  G +
Sbjct: 411 SGMVDGGLRLFYDMLASGHA 430



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 1/142 (0%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P    Y ++I    K+     AL V + M   G   +A+++  +++ L    R+++A
Sbjct: 323 KCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDA 382

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVL 216
             + + M +   +PD  AY  ++   C  G +     +   M        D  +Y+ L+ 
Sbjct: 383 MMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLD 442

Query: 217 GACRAGRVEEAFVLLRRMVDDG 238
           G   A  +  A  LL RM+D G
Sbjct: 443 GLLLAKDLPRAMDLLNRMLDQG 464


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  L+   CKL KIDEA  V++ M+  G   + + F+ ++S   +  R+ EA  +
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 481

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PD+  +N L++  C    +     +L+ M  E + A+  TY+ L+    R
Sbjct: 482 FREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR 541

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G ++EA  L+  MV  G  +   TY  ++  L R G   +A
Sbjct: 542 RGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKA 583



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI   CK  +I EA+ +   M   G      TF+ ++S L     ++ A  L
Sbjct: 457 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWL 516

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    V  +   YN L+ A+  +G +     ++ +M  +    D  TY++L+ G CR
Sbjct: 517 LRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCR 576

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           AG V++A  L  +M+ DG +    +   ++  L R G   +AV+F
Sbjct: 577 AGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEF 621



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 122/252 (48%), Gaps = 21/252 (8%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           IP++V + R   + G  PD  T   ++ L++      +++   +LL     +       T
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYT---FNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT 531

Query: 73  FNFITNT-------ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
           +N + N        + +  +++++    + LD+       Y++LI  LC+  ++D+A  +
Sbjct: 532 YNTLINAFLRRGEIKEARKLVNEMVFQGSPLDE-----ITYNSLIKGLCRAGEVDKARSL 586

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV---SPDLTAYNYLLTA 182
            + M   G   S I+ + +++ L R   +EEA   +E  KE+ +   +PD+  +N L+  
Sbjct: 587 FEKMLRDGHAPSNISCNILINGLCRSGMVEEA---VEFQKEMVLRGSTPDIVTFNSLING 643

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
            C  G +     + +K++ E +  D  T++ L+   C+ G V +A +LL   ++DG    
Sbjct: 644 LCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 703

Query: 243 YSTYAHVMGALL 254
           + T++ ++ +++
Sbjct: 704 HRTWSILLQSII 715



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 107/239 (44%), Gaps = 14/239 (5%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
           +P +  ++ L++A   E  +     +  +  R  C     TFN + +        +++L 
Sbjct: 456 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALW 515

Query: 85  VLSDLCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           +L D+      + +G    +  Y+TLI    +  +I EA ++V+ M   G  L  IT++ 
Sbjct: 516 LLRDM------ISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNS 569

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++  L R   +++A  L E M     +P   + N L+   C  G +       K+M    
Sbjct: 570 LIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG 629

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              D  T+++L+ G CRAGR+E+   + R++  +G      T+  +M  L + G+   A
Sbjct: 630 STPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDA 688



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 110/242 (45%), Gaps = 8/242 (3%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN--TENSLS 84
           G  PD+ T  Y  + +   G     + + Y + K      FNT     F+T+   +++ +
Sbjct: 317 GFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK-PEIVIFNTL-IHGFVTHGRLDDAKA 374

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           VLSD+  +   +    P    Y++LI    K   +  AL V+  M   G   +  ++  +
Sbjct: 375 VLSDMVTSYGIV----PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTIL 430

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +  +++EA+ ++  M    + P+   +N L++A+C +  +     + ++M  +  
Sbjct: 431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 490

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  T+++L+ G C    ++ A  LLR M+ +G      TY  ++ A LR G   +A K
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARK 550

Query: 265 FV 266
            V
Sbjct: 551 LV 552



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 2/189 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++LI  LC++ +I  AL ++  M   G   + +T++ +++   R   ++EA  L
Sbjct: 492 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKL 551

Query: 161 MEVMKEIRVSP-DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +  M   + SP D   YN L+   C  G +     + +KM  +       + + L+ G C
Sbjct: 552 VNEMV-FQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLC 610

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R+G VEEA    + MV  G +    T+  ++  L R G     +          I  DT 
Sbjct: 611 RSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTV 670

Query: 280 LFGSLGSKL 288
            F +L S L
Sbjct: 671 TFNTLMSWL 679



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 13/204 (6%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLA------RLDKGFPRK-S 104
           +T R +L  R    C  T  ++N +        ++S  C  +A       L +  P    
Sbjct: 164 QTTRLMLEMRNVYSCEPTFKSYNVVLEI-----LVSGNCHKVAANVFYDMLSRKIPPTLF 218

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            +  ++   C + +ID AL ++  M + G   +++ +  ++  L++  R+ EA  L+E M
Sbjct: 219 TFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
             +   PD   +N ++   C    +   + ++ +M       D  TY  L+ G C+ GRV
Sbjct: 279 FLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRV 338

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAH 248
           + A  L  R +   + V+++T  H
Sbjct: 339 DAAKDLFYR-IPKPEIVIFNTLIH 361


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 186 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 245

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 246 FTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 305

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 306 MKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSV 365

Query: 261 QAVKFV 266
            A K +
Sbjct: 366 DAEKML 371



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 92/210 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+    +L  +DE  R+   M   G      T+  +++ L +  +M++A  L
Sbjct: 171 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 230

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 231 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCK 290

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A +        +I LD   
Sbjct: 291 KGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVA 350

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 351 YTALISGLCQEGRSVDAEKMLREMLSVGLK 380



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK   I  A  V D + + G   S ++++ +++   R   +
Sbjct: 130 LECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 189

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M    V PD+  Y+ L+   C +  +   + +  +M  + L  +  T+  L
Sbjct: 190 DEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTL 249

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFV 266
           + G C+ GRV+ A  + +RM+   QS+L    TY  ++  L + G   QA   +
Sbjct: 250 IDGHCKNGRVDLAMEIYKRML--SQSLLPDLITYNTLIYGLCKKGDLKQAHHLI 301



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N     +++   C+   R+
Sbjct: 201 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 259

Query: 97  DKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+  +
Sbjct: 260 DLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTL 319

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +  +  D  AY  L++  C +G       +L++M    L
Sbjct: 320 IDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 379

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             + RTY  ++   C+ G V +   LL+ M  DG      TY  +M  
Sbjct: 380 KPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 56/135 (41%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  + + E      L  +N L+
Sbjct: 86  DAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKXILECGYPASLYFFNILM 145

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +Y+ L+ G  R G ++E F L   M+  G  
Sbjct: 146 HRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ 205

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 206 PDVYTYSVLINGLCK 220



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 59/149 (39%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK           + E G+  S   F+ ++    
Sbjct: 90  CYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFC 149

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 150 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 209

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G C+  ++++A  L   M+  G
Sbjct: 210 TYSVLINGLCKESKMDDANELFDEMLVKG 238


>gi|212275248|ref|NP_001130560.1| uncharacterized protein LOC100191659 [Zea mays]
 gi|194689480|gb|ACF78824.1| unknown [Zea mays]
          Length = 558

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 3/216 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   ++ T +  LC+    DEA   +D M   GF  S  TF  ++  L +  R+ +A  +
Sbjct: 175 PDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEV 234

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M  +   P +  YN L+   C+ G L     +LKK+++  L  D  T+  ++ G C+
Sbjct: 235 LDAMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCK 294

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM-VCGGRDIKLDTE 279
            GR EEA  +    +  G S    TY  ++    + G   +A   +M +CG  D     +
Sbjct: 295 VGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPD 354

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
              S G  L  L R  E +   +   KR  + GF++
Sbjct: 355 KT-SFGIVLTALLRAGETSAAWQTY-KRMERAGFEV 388



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
            ++E ++V+D++      L+   ++ ILS L R      A  L   M    V+PD  ++ 
Sbjct: 125 PVEERVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFRAMP---VAPDAHSFA 181

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
             +   C +G        L +M          T+ A+V   C+ GRV +A  +L  M+  
Sbjct: 182 TAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGL 241

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G      TY  ++G L  +G   +A++ +
Sbjct: 242 GCEPTIRTYNSLVGGLCYVGRLEEALELL 270



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 43/209 (20%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG- 159
           P    Y++L+G LC + +++EAL ++  + +        TF  +L    +  R EEA   
Sbjct: 245 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAI 304

Query: 160 -----------------------------------LMEVM--KEIRVSPDLTAYNYLLTA 182
                                              LME+    +    PD T++  +LTA
Sbjct: 305 FHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIVLTA 364

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR-----AGRVEEAFVLLRRMVDD 237
               G  +A     K+ME      D R  D L  G CR     A  + +A  +  ++V  
Sbjct: 365 LLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEVFGKVVAS 424

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G   +  TY  +  AL R G    AV  +
Sbjct: 425 GHEPVSYTYCLMAQALARGGEVDAAVALL 453



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 3/156 (1%)

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +EE   ++++++    +  ++ YN +L+A    G+      + + M    +  DA ++  
Sbjct: 126 VEERVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFRAM---PVAPDAHSFAT 182

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
            V   CR G  +EA + L  MV  G     +T++ V+G L + G   +A++ +    G  
Sbjct: 183 AVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGLG 242

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +     + SL   L  + R  EA  +LK++    L
Sbjct: 243 CEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPL 278


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 125/273 (45%), Gaps = 10/273 (3%)

Query: 10  KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNT 69
           K L+ Q++ +    +K G   +  T   Y+ ++N    +R+++    LL+K     C   
Sbjct: 160 KGLLQQAIQLLEKMSKHGCTANIVT---YNAIINGLCEQRNVDGAMGLLSKMKSYGCKPD 216

Query: 70  ANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVD 127
             T+N +     S +   D    +  + +    P    ++TLIG LC+   + +A+ V  
Sbjct: 217 IVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFK 276

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M + G   ++IT+  I+S L +  ++++A  L   M     +PD     Y L A C   
Sbjct: 277 QMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI---YQLLAECLND 333

Query: 188 NLTATSGV--LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           + T    +  ++K+++  +      Y+A++LG CR G+ E A  ++  MV  G      T
Sbjct: 334 DDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLT 393

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           Y  ++  L   GY  +A + ++    RD+ +++
Sbjct: 394 YVILIEGLAYEGYLNEARELLIKLCSRDVLVNS 426



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 105/235 (44%), Gaps = 2/235 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ L++    E D++    LL       C  +   +N +     S     D    
Sbjct: 75  PNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADEL 134

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +  +  +   P ++ ++ +I  LC+   + +A+++++ M++ G   + +T++ I++ L  
Sbjct: 135 VTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCE 194

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            + ++ A GL+  MK     PD+  YN LL   C          ++  M +     D  T
Sbjct: 195 QRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVT 254

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           ++ L+   C+ G + +A  + ++M D G +    TY+ ++  L +     QA++ 
Sbjct: 255 FNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALEL 309



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 80/166 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC+  ++ +AL V+D M   G     +T++ +L    +G+   +A  L
Sbjct: 5   PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 64

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M+    +P+   YN L+   C +G++     +L+ +           Y+ ++ G C 
Sbjct: 65  IDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS 124

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           A R  +A  L+  M+ +      +T+  V+ +L R G   QA++ +
Sbjct: 125 AERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLL 170



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T++  LC  ++  +A  +V  M       +  TF+ ++  L R   +++A  L
Sbjct: 110 PSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQL 169

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M +   + ++  YN ++   C + N+    G+L KM+      D  TY+ L+ G C 
Sbjct: 170 LEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCS 229

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A R  +A  L+  M  +G      T+  ++G L + G    A++       +    ++  
Sbjct: 230 AARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSIT 289

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
           + ++ S L    + ++A  +  EM  +    GF     Y++
Sbjct: 290 YSTIISGLAKATKLDQALELFNEMGHK----GFNPDKIYQL 326



 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 57/138 (41%)

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
           + V P+   YN L+   C +G +     VL  M       D  TY+ L+   C+     +
Sbjct: 1   MPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQ 60

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  L+  M  +G +    TY  +M  +   G    A++ +        K  T  + ++  
Sbjct: 61  AMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 120

Query: 287 KLIGLERFNEANFILKEM 304
            L   ER+ +A+ ++ EM
Sbjct: 121 GLCSAERWGDADELVTEM 138


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 16/241 (6%)

Query: 50  DLETVRYLLNKRARDCCFN-------TANTFNFIT-NT-------ENSLSVLSDLCRTLA 94
           ++ T  Y L  R  DC F+       T   FN +T NT       EN ++    L + L 
Sbjct: 101 NIVTNSYCLRHRI-DCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLV 159

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R     P +  Y T++  L K    ++ L ++ IM +G       T+  ++  L +   +
Sbjct: 160 REKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINL 219

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A  L+  MK+  + P++  YN L+   C  G       +L +M    +  +  T+  L
Sbjct: 220 DAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSIL 279

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ G+VE+A  ++R M++ G      TY+ +M      G   +A +   V   + I
Sbjct: 280 IDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGI 339

Query: 275 K 275
           K
Sbjct: 340 K 340



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 96/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LCK   +D A+ +++ M +     +  T++ ++  L +  + E+   L
Sbjct: 201 PDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTL 260

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M  + ++P++  ++ L+   C +G +     V++ M E+ +  D  TY A++ G C 
Sbjct: 261 LSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCL 320

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V+ A  +   + D G      +Y+ ++    +    A+A++       + +K DT  
Sbjct: 321 RGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVT 380

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + ++   LI + R  +A  I  EM
Sbjct: 381 YSTILHGLIEVGRIGDAKKIFDEM 404



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 36/224 (16%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKG  P   +Y  LI   CK K + +A+++   +++ G     +T+  IL  L    R+ 
Sbjct: 336 DKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIG 395

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAY-------------------------------- 183
           +A  + + M  +  +PD+  ++ LL  Y                                
Sbjct: 396 DAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVI 455

Query: 184 ---CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
              C    +     + +K+    L  D RTY+ ++ G CR G  +E   +LR+M D+G  
Sbjct: 456 NGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCP 515

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
               TY  +M    R    ++ V F+    GR    D    G L
Sbjct: 516 ANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVL 559



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 76/163 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI  LCK  K+++A  V+  M E G     IT+  I+       +++ A  +
Sbjct: 271 PNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRV 330

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             V+++  + P++ +Y+ L+  YC K NL     +  ++ ++ L  D  TY  ++ G   
Sbjct: 331 FNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIE 390

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR+ +A  +   M+  G +     ++ ++    + G   +A+
Sbjct: 391 VGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAM 433


>gi|449477018|ref|XP_004154904.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 567

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 125/291 (42%), Gaps = 5/291 (1%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           +++LV       G  PD  +   Y  +VNA   E  ++     + +  R CC     T+N
Sbjct: 239 KALLVYEQMIALGILPDIFS---YTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYN 295

Query: 75  FITNTENSLSVLSDLCRTLARL-DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            + +   SL  +    + LA + +KG P  S  Y  LI   CK  ++++A ++   M E 
Sbjct: 296 SLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLFGCMMEK 355

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
              +    +  ++       R+++A  + + M ++ +  +    N L+  YC  G++   
Sbjct: 356 NLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKA 415

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + VL  M++  L  D+  Y+ L+ G C+     +AF L   M + G +    TY  ++  
Sbjct: 416 AEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKN 475

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
           L  +G+   A+    +   R +  +   + +L      +  F+ A  I K+
Sbjct: 476 LFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKD 526



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 97/210 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   + ++L+  L +  +  +AL V + M   G      ++  +++   +  R++EA+  
Sbjct: 219 PSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNF 278

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M+     P++  YN L+  Y   G++     VL  M E+ +  ++RTY  L+ G C+
Sbjct: 279 VKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCK 338

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E+A  L   M++    V    Y  ++ A    G    A++         +K++T +
Sbjct: 339 RGQMEQAEKLFGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVI 398

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             SL +    L   N+A  +L  M   +LK
Sbjct: 399 CNSLINGYCKLGHVNKAAEVLVSMKDWNLK 428



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 88/207 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  ++   CK  ++DEA   V  M       + +T++ ++        +  A  +
Sbjct: 254 PDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKV 313

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + +M E  +  +   Y  L+  YC +G +     +   M E+ L  D   Y  L+   C 
Sbjct: 314 LALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLFGCMMEKNLFVDEHVYGVLIHAYCT 373

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AGRV++A  +   M+  G  +       ++    +LG+  +A + ++     ++K D+  
Sbjct: 374 AGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYG 433

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + +L       E F +A  +  EM+ +
Sbjct: 434 YNTLLDGFCKQEDFIKAFKLCDEMHNK 460



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 84/191 (43%)

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           AL V D M + G   S  + + +LS L +     +A  + E M  + + PD+ +Y  ++ 
Sbjct: 205 ALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVN 264

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
           AYC +G +      +K+ME      +  TY++L+ G    G V  A  +L  M + G   
Sbjct: 265 AYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPE 324

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
              TY  ++    + G   QA K       +++ +D  ++G L        R ++A  I 
Sbjct: 325 NSRTYTLLIKGYCKRGQMEQAEKLFGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIR 384

Query: 302 KEMNKRDLKMG 312
             M K  LKM 
Sbjct: 385 DAMLKVGLKMN 395


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 4/188 (2%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P    Y TLI  LCK +++ EAL +   M   G   +  T+  ++  L      +E
Sbjct: 109 EGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKE 168

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS---GVLKKMEEEKLGADARTYDA 213
           A  L   M   ++ PD   +N L+ A C +G +       G+ ++M ++ L  D  TY+ 
Sbjct: 169 AIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNT 228

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+ G C  GR+ +A  L   MV  GQ     TY  +   L +    A+A+  + V  G +
Sbjct: 229 LIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTN 288

Query: 274 IKLDTELF 281
           +  D  ++
Sbjct: 289 LDPDIHIY 296



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LC + ++ +A+ +   M   G     +T+  +   L +  R+ EA  L
Sbjct: 221 PDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVL 280

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++V++   + PD+  Y+ ++   C  G L A   +  K+  + L  D RTY  ++ G C+
Sbjct: 281 LKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQ 340

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            G + EA  L   M D+     YST++
Sbjct: 341 QGLLAEASKLFGEM-DENDIESYSTFS 366



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 3/171 (1%)

Query: 98  KGFPRKSAYDTLIGRLCK---LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           K  P +  ++TL+  LCK   ++ +D+A+ + + M++ G     +T++ ++  L    R+
Sbjct: 180 KIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRL 239

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  L   M      PDL  Y  L    C    L     +LK +E   L  D   Y  +
Sbjct: 240 RDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIV 299

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           + G CRAG +E A  L  ++   G      TY  ++  L + G  A+A K 
Sbjct: 300 MDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKL 350



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 3/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+  + ++K     L +   M   G   +  T + +++      R+  A+ +
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  + ++   P    +  L+   C +G +     +  KM  E    D  TY  L+ G C+
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             ++ EA  L   M+  G S    TY+ ++  L  LG++ +A++       R I  D   
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 187

Query: 281 FGSLGSKLIG---LERFNEANFILKEMNKRDL 309
           F +L   L     ++  ++A  + +EM+++ L
Sbjct: 188 FNTLVDALCKEGMIQIMDKAMGLFEEMSQQGL 219


>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa]
 gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 21/272 (7%)

Query: 40  DLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-----FITNTENSL--SVLSDL-CR 91
           DL+NA       E V Y++    ++  F   + FN      +T  E+ L   + S L C 
Sbjct: 111 DLLNAVKALPCKERVDYIVRVLDKEIGFFNISDFNDVLMALVTANESDLVLKLYSGLSCY 170

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           +L       P    +  ++   CK K   EA RV+D M + GF  +  T   +++   + 
Sbjct: 171 SLE------PNSWTFSIMVRCHCKKKDPGEAKRVLDQMMQKGFNPNVATLTILINSFCKM 224

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +++  + + EVM  I   P++  YN LL   C+ G +     +++ +++  +  D  TY
Sbjct: 225 GQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYVGRIDEAFELMEDIKKTTVEPDIYTY 284

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV--- 268
            A++ G C+ GR +EA  LL   ++ G +    T+  ++    + G   +    + +   
Sbjct: 285 TAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVVTFNTLLDGYAKEGRPLKGFGVLKLMKQ 344

Query: 269 --CGGRDIKLDTELFGSL--GSKLIGLERFNE 296
             C    I   T L G L  G  L GL  FNE
Sbjct: 345 RKCMPDYISYSTLLHGLLLWGKVLAGLRIFNE 376



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 17/233 (7%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-------FITNTENSLSV 85
           P  A    L+N+      L+    +     R  C     T+N       ++   + +  +
Sbjct: 209 PNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYVGRIDEAFEL 268

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           + D+ +T        P    Y  ++   CK+ + DEA+ +++   E G   + +TF+ +L
Sbjct: 269 MEDIKKTTVE-----PDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVVTFNTLL 323

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
               +  R  + +G++++MK+ +  PD  +Y+ LL      G + A   +  +ME   L 
Sbjct: 324 DGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGLLLWGKVLAGLRIFNEMEGSGLE 383

Query: 206 ADARTYDALVLGACRAG-----RVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           AD R  ++LV G CR        VE A+ +  +M   G  +  STYA V+ AL
Sbjct: 384 ADERLMNSLVRGLCRKSIKENDLVEVAYEVFEKMKKRGFVIEQSTYALVIQAL 436


>gi|357141094|ref|XP_003572081.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 541

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 8/209 (3%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y TLI  LC ++  D+A  ++D M E G   + +T +PI+  L    R ++A+ L+E  
Sbjct: 225 SYGTLIKALCMMQHPDKAASLLDEMREQGIEANLLTCNPIVYSLALAGRFQDAYKLLEKF 284

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V+P+++ +N L+  YC  G+L   S VLK M    +   A+TY+   +   +   V
Sbjct: 285 PLYGVAPNISTFNSLVLGYCKYGDLAGASSVLKAMIGRGILPTAKTYNYFFVFFAKTCNV 344

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALL---RLGYYAQAVKFVMVCG-GRDIKLDTEL 280
           E    L  +MV++G +    TY  ++  L    RL    Q +K +   G   D+   T L
Sbjct: 345 ELGMNLYNKMVNNGYAPDQITYNLLIKMLCEANRLELVVQMIKEMKTSGFESDLATSTML 404

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
              L        +F EA    ++M +R L
Sbjct: 405 IHLLCRS----HQFEEACVEFEDMFRRGL 429



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 2/187 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S +++L+   CK   +  A  V+  M   G   +A T++       +   +E    L
Sbjct: 291 PNISTFNSLVLGYCKYGDLAGASSVLKAMIGRGILPTAKTYNYFFVFFAKTCNVELGMNL 350

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M     +PD   YN L+   C    L     ++K+M+     +D  T   L+   CR
Sbjct: 351 YNKMVNNGYAPDQITYNLLIKMLCEANRLELVVQMIKEMKTSGFESDLATSTMLIHLLCR 410

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           + + EEA V    M   G    Y TY  +M  + RLG      K   +   R +   T+L
Sbjct: 411 SHQFEEACVEFEDMFRRGLVPQYITYRMLMKEIKRLGLVELVEKLTNLM--RSVPHSTKL 468

Query: 281 FGSLGSK 287
            GS   K
Sbjct: 469 PGSYREK 475



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 3/168 (1%)

Query: 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAI---TFHPILSVLTRGKRMEEAWGLMEVMKE 166
           +G LCK      A +++         L A    T++ +L   +  +R+E+   L   M+ 
Sbjct: 157 VGALCKEGHPRPAAKLIQRCRHEEGTLPAPDERTYNMLLDGWSSARRLEKVEKLWAEMRL 216

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             V   + +Y  L+ A C   +    + +L +M E+ + A+  T + +V     AGR ++
Sbjct: 217 AGVRSTVVSYGTLIKALCMMQHPDKAASLLDEMREQGIEANLLTCNPIVYSLALAGRFQD 276

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           A+ LL +    G +   ST+  ++    + G  A A   +    GR I
Sbjct: 277 AYKLLEKFPLYGVAPNISTFNSLVLGYCKYGDLAGASSVLKAMIGRGI 324


>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 861

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 93/190 (48%), Gaps = 1/190 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + KG  P +  Y+ +I   CK++   EA ++ D M   G+  + +++  ++S L    + 
Sbjct: 333 IQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISGLYLHGKT 392

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  L   M    ++ DL +YN L+   C +G L   + +L K+  + L     ++  L
Sbjct: 393 DEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELAKATNLLNKLLIQGLEPSVSSFTPL 452

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +   C+ G  E A  LL+ M D     + ST+ +++  L + G +AQ +++++      +
Sbjct: 453 IKCLCKVGDTEGAMRLLKDMHDRHLEPIASTHDYMIIGLSKKGDFAQGMEWLLKMLSWKL 512

Query: 275 KLDTELFGSL 284
           K + + F  L
Sbjct: 513 KPNMQTFEHL 522



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 78/181 (43%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + ++ LI   CK K+ D    ++ IM       S  T+  I++ L + ++ +EA+ +   
Sbjct: 237 TVFNALINGFCKQKQYDRVSEILHIMIAMKCNPSIYTYQEIINGLLKRRKNDEAFRVFND 296

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +K+    PD   Y  ++  +C  G L     +  +M ++ L  +  TY+ ++ G C+   
Sbjct: 297 LKDRGYFPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQKGLVPNEYTYNVMIYGYCKVRD 356

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
             EA  L   M   G +    +Y+ ++  L   G   +A+        + I  D   + S
Sbjct: 357 FAEARKLYDDMCGRGYAENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNS 416

Query: 284 L 284
           L
Sbjct: 417 L 417



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 101/228 (44%), Gaps = 14/228 (6%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSVLSDLC 90
           ++ L+N    ++  + V  +L+      C  +  T+  I N        + +  V +DL 
Sbjct: 239 FNALINGFCKQKQYDRVSEILHIMIAMKCNPSIYTYQEIINGLLKRRKNDEAFRVFNDL- 297

Query: 91  RTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                 D+G FP +  Y T+I   C +  + EA ++   M + G   +  T++ ++    
Sbjct: 298 -----KDRGYFPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQKGLVPNEYTYNVMIYGYC 352

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + +   EA  L + M     + ++ +Y+ +++     G       +  +M  + +  D  
Sbjct: 353 KVRDFAEARKLYDDMCGRGYAENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIARDLI 412

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +Y++L+ G C+ G + +A  LL +++  G     S++  ++  L ++G
Sbjct: 413 SYNSLIKGLCQEGELAKATNLLNKLLIQGLEPSVSSFTPLIKCLCKVG 460



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 73/157 (46%), Gaps = 2/157 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P+  + +  +  L +   ++E   V   + + GF  SA +F+  L    +  R +  W L
Sbjct: 127 PKNDSLEGYVRLLGENGMVEEVFDVFVSLKKVGFLPSASSFNVCLLACLKVGRTDLVWKL 186

Query: 161 MEVMKE--IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            E+M E  + V+ D+     L+ A+C +  +     +L+++ E+ L  D   ++AL+ G 
Sbjct: 187 YELMIESGVGVNIDVETVGCLIKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNALINGF 246

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           C+  + +    +L  M+    +    TY  ++  LL+
Sbjct: 247 CKQKQYDRVSEILHIMIAMKCNPSIYTYQEIINGLLK 283



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 5/178 (2%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRME 155
           GF P  S+++  +    K+ + D   ++ ++M E G G++    T   ++       ++ 
Sbjct: 159 GFLPSASSFNVCLLACLKVGRTDLVWKLYELMIESGVGVNIDVETVGCLIKAFCAENKVF 218

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
             + L+  + E  +  D T +N L+  +C +      S +L  M   K      TY  ++
Sbjct: 219 NGYELLRQVLEKGLCVDNTVFNALINGFCKQKQYDRVSEILHIMIAMKCNPSIYTYQEII 278

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK--FVMVCGG 271
            G  +  + +EAF +   + D G       Y  V+     +G  A+A K  F M+  G
Sbjct: 279 NGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQKG 336


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P K AY+ LI   C    + +A  ++  +   G  L  + F  I++ L +  R+
Sbjct: 456 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 515

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  + ++   + + PD   Y+ L+  YC  G +     V   M    +  +   Y  L
Sbjct: 516 MDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTL 575

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA-VKF-VMVCGGR 272
           V G C+ GR++E   L R M+  G       Y+ ++  L + G    A VKF  M   G 
Sbjct: 576 VNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESG- 634

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
            I +D   +  +   L     F+EA F+ KE+   ++K+  
Sbjct: 635 -IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 674



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 13/287 (4%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLET----VRYLLNKRARDCCFNTANTFNFI 76
           +   + G  PD  T   Y+ +V+A    R ++     +R ++NKR          T+N +
Sbjct: 243 KEMVQRGIPPDLVT---YNSVVHALCKARAMDKAEAFLRQMVNKRV----LPNNWTYNNL 295

Query: 77  TNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
               +S     +  R    + +    P       L+G LCK  KI EA  V D MA  G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
                +++ +L+       + +   L ++M    ++PD   +N L+ AY   G L     
Sbjct: 356 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMI 415

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +  +M +  +  D  TY  ++   CR G++++A     +M+D G +     Y  ++    
Sbjct: 416 IFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 475

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
             G   +A + +       + LD   F S+ + L  L R  +A  I 
Sbjct: 476 THGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF 522



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 98/212 (46%), Gaps = 4/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI        +D+A+ + + M + G     +T+  +++ L R  +M++A   
Sbjct: 392 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 451

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V+PD  AYN L+  +C  G+L     ++ ++    +  D   + +++   C+
Sbjct: 452 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 511

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDT 278
            GRV +A  +    V+ G       Y+ +M     +G   +A++    MV  G  I+ + 
Sbjct: 512 LGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG--IEPNV 569

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            ++ +L +    + R +E   + +EM +R +K
Sbjct: 570 VVYCTLVNGYCKIGRIDEGLSLFREMLQRGIK 601



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 87/204 (42%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           + ++I  LCKL ++ +A  + D+    G    A+ +  ++       +ME+A  + + M 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y  L+  YC  G +     + ++M +  +      Y  ++ G  +AGR  
Sbjct: 562 SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTV 621

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A V    M + G ++   TY  V+  L +   + +A+         ++K++     ++ 
Sbjct: 622 PAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 681

Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
             +    R  EA  +   +++  L
Sbjct: 682 DGMFQTRRVEEAKDLFASISRSRL 705



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 82/210 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+T+I    K   +++A  +   M + G     +T++ ++  L + + M++A   
Sbjct: 217 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 276

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M   RV P+   YN L+  Y   G       V K+M    +  D  T   L+   C+
Sbjct: 277 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+++EA  +   M   GQ+    +Y  ++      G          +  G  I  D   
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 396

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F  L          ++A  I  EM    +K
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVK 426



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEAW 158
           P   +Y  L+  LC   K  +A  ++ +MAEGG   S   + ++ ++    +   + +A 
Sbjct: 180 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 239

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L + M +  + PDL  YN ++ A C    +      L++M  +++  +  TY+ L+ G 
Sbjct: 240 DLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGY 299

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              G+ +EA  + + M          T + +MG+L + G   +A
Sbjct: 300 SSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 343



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           + L+   C+ K+ DEAL ++     E G      ++  +L  L    +  +A  L+ +M 
Sbjct: 150 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 209

Query: 166 E--IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           E     SP++ AYN ++  +  +G++     + K+M +  +  D  TY+++V   C+A  
Sbjct: 210 EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARA 269

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +++A   LR+MV+        TY +++      G + +AV+
Sbjct: 270 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVR 310



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 42/228 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+   CK+ +IDE L +   M + G   S I +  I+  L +  R   A   
Sbjct: 567 PNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVK 626

Query: 161 MEVMKEIRVSPDLTAYNYLLTAY----CF---------------KGNLTATSGVL----- 196
              M E  ++ D+  YN +L       CF               K N+   + ++     
Sbjct: 627 FHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQ 686

Query: 197 -KKMEEEK----------LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            +++EE K          L     TY  ++    + G VEEA  +   M + G       
Sbjct: 687 TRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRL 746

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD-------TELFGSLGS 286
             HV+  LL+     +A  ++     R+  L+        +LF S G+
Sbjct: 747 LNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKGT 794


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 11/291 (3%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCC---FNTANTFNFIT 77
           +  T+ G  PD  T   Y+ L++A    R++     L+++  R        T NT  +  
Sbjct: 410 KMMTEEGLAPDVIT---YNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNL 466

Query: 78  NTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
             E       +L R+  +  +GF P + +Y T++    K  K + AL + D M++     
Sbjct: 467 CKEKRYEEAEELLRSPPQ--RGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTP 524

Query: 137 SAITFHPILSVL-TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
           S  T++ ++  L T GK  E    L E+MK+  V PD T YN ++ AYC +G+L      
Sbjct: 525 SIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLV-PDDTTYNIIIHAYCKEGDLEKAFQF 583

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             KM E     D  T + L+ G C  G++E+A  L     + G+ V   TY  ++ AL +
Sbjct: 584 HNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCK 643

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            G    A+ F      R ++ D   +  + S L    R  EA  +L ++++
Sbjct: 644 DGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDE 694



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 95/209 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+    K ++  +AL +++ M + G   S +T + ++  L R  ++EEA G 
Sbjct: 349 PDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGR 408

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M E  ++PD+  YN L+ AYC   N+     ++ +M    L  D  T + L+   C+
Sbjct: 409 LKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCK 468

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R EEA  LLR     G      +Y  VM A  +      A+        R +      
Sbjct: 469 EKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYT 528

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           + +L   L  + +  EA   L E+ K+ L
Sbjct: 529 YNTLIKGLCTIGKLTEAIDKLNELMKKGL 557



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 5/244 (2%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           TFN + +T  S   L+D   TL+ + +GF   P    Y+TL+   C+   + EA  ++  
Sbjct: 212 TFNLLVHTHCSKGTLADALSTLSTM-QGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLAR 270

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M + G   +  T++ ++S   R   +++A  ++E M      PDL  YN L    C  G 
Sbjct: 271 MKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGK 330

Query: 189 LTATSGVLKKMEEEKL-GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
           +     +  +ME   +   D  TY+ LV    +  R  +A  LL  M D G      T+ 
Sbjct: 331 VDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHN 390

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            V+  L R G   +A+  + +     +  D   + +L           +A  ++ EM + 
Sbjct: 391 IVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRS 450

Query: 308 DLKM 311
            LKM
Sbjct: 451 GLKM 454



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           RS  + G  PDE     Y  ++ A   E   E   YL ++ ++     +  T+N +    
Sbjct: 480 RSPPQRGFVPDE---VSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGL 536

Query: 81  NSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
            ++  L++    L  L  KG  P  + Y+ +I   CK   +++A +  + M E  F    
Sbjct: 537 CTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDV 596

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T + +++ L    ++E+A  L E   E     D+  YN L+ A C  G++         
Sbjct: 597 VTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFAD 656

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           ME   L  DA TY+ ++     AGR EEA  +L ++ + G+
Sbjct: 657 MEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGK 697



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA--ITFHPIL 145
           D+ R+L  L +  P    ++ L+   C    + +AL  +  M   GFGLS   +T++ +L
Sbjct: 196 DVFRSLIAL-RLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQ--GFGLSPDVVTYNTLL 252

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
               R   + EA  L+  MK+  ++P    YN L++AY   G +   + V++ M      
Sbjct: 253 KAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFE 312

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRM 234
            D  TY+ L  G C+AG+V+EAF L   M
Sbjct: 313 PDLWTYNVLAAGLCQAGKVDEAFKLKDEM 341



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 2/163 (1%)

Query: 144 ILSVLTRGKRMEEAWGL--MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           +LS L R         L     +  +R+ P+   +N L+  +C KG L      L  M+ 
Sbjct: 179 VLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQG 238

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             L  D  TY+ L+   CR G + EA  LL RM  +G +   +TY  ++ A  RLG+  Q
Sbjct: 239 FGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQ 298

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           A   V        + D   +  L + L    + +EA  +  EM
Sbjct: 299 ATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEM 341



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 99/242 (40%), Gaps = 22/242 (9%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD-------CCFNTANTFNFIT 77
           K G  PD+ T   Y+ +++A   E DLE      NK   +        C    N      
Sbjct: 554 KKGLVPDDTT---YNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHG 610

Query: 78  NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
             E ++ +         ++D        Y+TLI  LCK   +D AL     M   G    
Sbjct: 611 KLEKAIKLFESWAEKGKKVDV-----ITYNTLIQALCKDGDVDTALHFFADMEARGLQPD 665

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA-YNYLLTAYCFKGNLTATSGVL 196
           A T++ +LS L+   R EEA  ++  + E   S  L+  ++Y L     +   T     +
Sbjct: 666 AFTYNVVLSALSEAGRSEEAQNMLHKLDE---SGKLSERFSYPLIKSSAEEVKTGKDPEV 722

Query: 197 KKMEEE---KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           K   E      G D  +Y+  V   C  G+++EA  +L  M+  G SV  STY  +M  L
Sbjct: 723 KSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGL 782

Query: 254 LR 255
           ++
Sbjct: 783 IK 784


>gi|222624458|gb|EEE58590.1| hypothetical protein OsJ_09919 [Oryza sativa Japonica Group]
          Length = 465

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 2/268 (0%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-FITNTENSLSVL 86
           + P  PT+  +  L+++          R       +     TA+ F   + ++ ++L  +
Sbjct: 76  SLPFAPTAPLFTTLISSLAASGRPLAARAAFASLLKSGVPPTASAFTALLRSSSDALDFV 135

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
             + R +  L    P  + Y+ +I  LC  + + EAL  +D M E G   +A +F  IL 
Sbjct: 136 DSVFRAMEALGCS-PDAAVYNWVISMLCDFQLVQEALGFLDHMLENGPRPTARSFTAILR 194

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                 R  +A  L++ M +    PD+ +Y  L+   C  G  +    +L + E +    
Sbjct: 195 AYCEQGRFFDAGRLVDTMIQNGCPPDVVSYTVLIEGLCRVGEFSTVEMILGESESQGWMP 254

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            A TY+  + G CR G ++EAF  +  M   G SV   T   +   L R   +++AV  +
Sbjct: 255 TAVTYNIYMSGLCRMGFLDEAFRQVDIMRGRGLSVTAETVHILFDCLCRNAMFSEAVCLL 314

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERF 294
                    +D   + +L S+L  ++ F
Sbjct: 315 EHSEELGWDVDVFCYNTLMSRLCDVDDF 342



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+  +  LC++  +DEA R VDIM   G  ++A T H +   L R     EA  L
Sbjct: 254 PTAVTYNIYMSGLCRMGFLDEAFRQVDIMRGRGLSVTAETVHILFDCLCRNAMFSEAVCL 313

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E  +E+    D+  YN L++  C   +      +L  + ++ +G D  ++   +   CR
Sbjct: 314 LEHSEELGWDVDVFCYNTLMSRLCDVDDFARVLKLLVDLLKKGIGPDKFSFTIAIRSLCR 373

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           AG++  A  L+         V ++T  H
Sbjct: 374 AGKLRLAKCLIENKGIKYDVVAFNTLIH 401


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 11/269 (4%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           S++  L  +  + Q+  + R   K G    +P +  Y  L+N      +    R ++N  
Sbjct: 448 SVINGLCQERKVDQAKKMLRQMYKHGC---KPNTVSYTALLNGLCKNGNSLEAREMMNMS 504

Query: 62  ARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLK 117
             D     A T++ + +    E   S   DL R +  + KGF P     + LI  LC+ +
Sbjct: 505 EEDWWIPNAITYSVLMHGFRREGKSSEACDLVREM--IKKGFFPTPVEINLLIQSLCQEE 562

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+DEA R ++     G  ++ + F  ++    +   +E A  L++ M      PD+  Y 
Sbjct: 563 KVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYT 622

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++ A   KG +   + +  KM    L     TY  ++   CR GRVE+   LL +M+  
Sbjct: 623 TIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKML-- 680

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            +    + Y  V+  L   G   QA K +
Sbjct: 681 SRQECRTAYNQVIEKLCSFGNLEQAYKLL 709



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 98/207 (47%), Gaps = 7/207 (3%)

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
           R  A+  ++    +  K+  A+RV+ +M + G        +  + VL  G R+++A   +
Sbjct: 231 RPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFL 290

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           E M+ + + P++  YN L+  YC    L     ++ +M  +    D  +Y  ++   C+ 
Sbjct: 291 ERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKE 350

Query: 222 GRVEEAFVLLRRMVDDGQ----SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            R++E  +L+ +M+ D       V Y+T+ H++    + G+  +A++F+     R  ++D
Sbjct: 351 KRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLS---KHGHGDEALEFLREAEERRFRVD 407

Query: 278 TELFGSLGSKLIGLERFNEANFILKEM 304
              + ++        R ++A  I+ EM
Sbjct: 408 KVGYSAIVHSFCREGRMDKAKEIVNEM 434



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 1/167 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C L ++++A+ ++  M   G     I+++ ++  L + KR++E   L
Sbjct: 300 PNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLL 359

Query: 161 MEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ME M K+  + PD   YN  +      G+       L++ EE +   D   Y A+V   C
Sbjct: 360 MEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFC 419

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           R GR+++A  ++  M   G      TY  V+  L +     QA K +
Sbjct: 420 REGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKML 466



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 95/214 (44%), Gaps = 13/214 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCF----NTANTFNFITNT----ENSLS 84
           P    Y  ++     E+ ++ VR L+ K  +D        T NTF  + +     + +L 
Sbjct: 335 PDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALE 394

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            L +      R+DK       Y  ++   C+  ++D+A  +V+ M   G     +T+  +
Sbjct: 395 FLREAEERRFRVDK-----VGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSV 449

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++ L + +++++A  ++  M +    P+  +Y  LL   C  GN      ++   EE+  
Sbjct: 450 INGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWW 509

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             +A TY  L+ G  R G+  EA  L+R M+  G
Sbjct: 510 IPNAITYSVLMHGFRREGKSSEACDLVREMIKKG 543



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 71/167 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  Y+T +  L K    DEAL  +    E  F +  + +  I+    R  RM++A  
Sbjct: 370 LPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKE 429

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M      PD+  Y  ++   C +  +     +L++M +     +  +Y AL+ G C
Sbjct: 430 IVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLC 489

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G   EA  ++    +D       TY+ +M    R G  ++A   V
Sbjct: 490 KNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLV 536



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/247 (18%), Positives = 107/247 (43%), Gaps = 27/247 (10%)

Query: 17  VLVTRSFTKSGAFPDEPTSAYYDDLVNAAGH-ERDLETVRYLLNKRARDCCFNTANTFNF 75
           +L+ +    S   PD+ T   +  +++  GH +  LE +R    +R             F
Sbjct: 358 LLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERR-------------F 404

Query: 76  ITNTENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEAL 123
             +     +++   CR   R+DK              P    Y ++I  LC+ +K+D+A 
Sbjct: 405 RVDKVGYSAIVHSFCRE-GRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAK 463

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           +++  M + G   + +++  +L+ L +     EA  +M + +E    P+   Y+ L+  +
Sbjct: 464 KMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGF 523

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
             +G  +    ++++M ++         + L+   C+  +V+EA   + + +++G +V  
Sbjct: 524 RREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNV 583

Query: 244 STYAHVM 250
             +  V+
Sbjct: 584 VNFTTVI 590


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A ++ D M       + +T
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVT 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L   + ++ +M 
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMS 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 310 MKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSV 369

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D   +  + ++        + + +LKEM +
Sbjct: 370 DAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK   + +A  ++D M+  G     IT+  ++    +   ++ A+ 
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M +  +  D  AY  L++  C +G       +L++M    L  DARTY  ++   C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFC 398

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + G V +   LL+ M  DG      TY  +M  
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 49/116 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L  L + K  +  WG  E + E      L  +N L+  +C  G++     V   +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  L     +Y+ L+ G  R G ++E F L   M+  G      TY+ ++  L +
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           EN L V  D CR +                +  L KLK         + + E G+  S  
Sbjct: 100 ENKLCVPFDTCRKV----------------LEHLMKLKYFKLVWGFYEEILECGYPASLY 143

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
            F+ ++    +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M
Sbjct: 144 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM 203

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
               +  D  TY  L+ G C+  ++++A  L   M+
Sbjct: 204 LASGVQPDVYTYSVLINGLCKENKMDDANKLFDEML 239


>gi|145334827|ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g57250, mitochondrial; Flags: Precursor
 gi|332009488|gb|AED96871.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 971

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 138/316 (43%), Gaps = 32/316 (10%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPT--SAYYDDLVNAAGHERDLETVRYLLN 59
           S+ R  P+K L+    ++       GAFP   T  S  Y   V     +  +E +  + N
Sbjct: 108 SITRDDPSKGLL----ILRDCLRNHGAFPSSLTFCSLIYR-FVEKGEMDNAIEVLEMMTN 162

Query: 60  KRARDCCFNTANTF-NFITNTENSLSVLSDLCRT----------LARLDKGF--PRKSAY 106
           K       N    F NF+ +     +V+S  C+            + +D G   P    Y
Sbjct: 163 K-------NVNYPFDNFVCS-----AVISGFCKIGKPELALGFFESAVDSGVLVPNLVTY 210

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
            TL+  LC+L K+DE   +V  + + GF    + +   +    +G  + +A      M E
Sbjct: 211 TTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDREMVE 270

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             ++ D+ +Y+ L+     +GN+    G+L KM +E +  +  TY A++ G C+ G++EE
Sbjct: 271 KGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEE 330

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           AFVL  R++  G  V    Y  ++  + R G   +A   +     R I+     + ++ +
Sbjct: 331 AFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVIN 390

Query: 287 KLIGLERFNEANFILK 302
            L    R +EA+ + K
Sbjct: 391 GLCMAGRVSEADEVSK 406



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 6/216 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTF--NFITNTENSLSVLSDLC 90
           P    Y  LV+A      ++ VR L+ +R  D  F     F  N+I       +++  L 
Sbjct: 205 PNLVTYTTLVSALCQLGKVDEVRDLV-RRLEDEGFEFDCVFYSNWIHGYFKGGALVDALM 263

Query: 91  RTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           +    ++KG  R   +Y  LI  L K   ++EAL ++  M + G   + IT+  I+  L 
Sbjct: 264 QDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLC 323

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  ++EEA+ L   +  + +  D   Y  L+   C KGNL     +L  ME+  +     
Sbjct: 324 KMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSIL 383

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           TY+ ++ G C AGRV EA  + + +V  G  + YST
Sbjct: 384 TYNTVINGLCMAGRVSEADEVSKGVV--GDVITYST 417



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKK 118
           ++R    NT  T+N + N       L +  R    L+     P +  Y  LI  LCK   
Sbjct: 682 KSRGVTLNTI-TYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGL 740

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
             +A +++D M   G   + I ++ I+    +  + E+A  ++      RV+PD    + 
Sbjct: 741 FLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSS 800

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           ++  YC KG++     V  + +++ + AD   +  L+ G C  GR+EEA  LLR M+
Sbjct: 801 MIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREML 857



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 6/177 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LC   ++ EA    D +++G  G   IT+  +L    + + ++    +
Sbjct: 380 PSILTYNTVINGLCMAGRVSEA----DEVSKGVVG-DVITYSTLLDSYIKVQNIDAVLEI 434

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                E ++  DL   N LL A+   G       + + M E  L  D  TY  ++ G C+
Sbjct: 435 RRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCK 494

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            G++EEA  +   +     S     Y  ++ AL + G    A + ++    + + LD
Sbjct: 495 TGQIEEALEMFNELRKSSVSAAV-CYNRIIDALCKKGMLDTATEVLIELWEKGLYLD 550



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y++LI  LC+   + EALR+ D +   G   S +T+  ++  L +     +A  L++ M
Sbjct: 692 TYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSM 751

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               + P++  YN ++  YC  G       V+ +    ++  DA T  +++ G C+ G +
Sbjct: 752 VSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDM 811

Query: 225 EEAFVLLRRMVDDGQS 240
           EEA  +     D   S
Sbjct: 812 EEALSVFTEFKDKNIS 827



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LCK   + +AL +       G  L+ IT++ +++ L +   + EA  L + ++
Sbjct: 658 YTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLE 717

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            I + P    Y  L+   C +G       +L  M  + L  +   Y+++V G C+ G+ E
Sbjct: 718 NIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTE 777

Query: 226 EAF-VLLRRMV 235
           +A  V+ R+M+
Sbjct: 778 DAMRVVSRKMM 788



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 101/266 (37%), Gaps = 6/266 (2%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           ++  L  K ++  +  V     + G + D  TS      ++A G ++ +  + Y L +  
Sbjct: 522 IIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLN 581

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLAR--LDKGFPRKSAYDTLIGRLCKLKKID 120
            D C    N    +     S     ++   + R  L   FP  +   TL+     L+ +D
Sbjct: 582 SDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFP-STILKTLVD---NLRSLD 637

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
             L VV+        +  I +  I++ L +   + +A  L    K   V+ +   YN L+
Sbjct: 638 AYLLVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLI 697

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
              C +G L     +   +E   L     TY  L+   C+ G   +A  LL  MV  G  
Sbjct: 698 NGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLV 757

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFV 266
                Y  ++    +LG    A++ V
Sbjct: 758 PNIIIYNSIVDGYCKLGQTEDAMRVV 783


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 8/237 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD-LCR 91
           P +  Y+ L++  G  R  +    +L +   +    +  T+N + +      +L D L  
Sbjct: 283 PDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVL 342

Query: 92  TLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
               +DKG  P    Y TL+       K + A+ V + M + G   +  TF+ ++ +   
Sbjct: 343 KRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGD 402

Query: 151 GKRMEEAWGLMEVMKEIRV---SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             + EE   +++V KEI+V   SPD+  +N LL  +   G  +  SGV ++M+  +   +
Sbjct: 403 RGKFEE---MVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPE 459

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             T++ L+    R G  ++A    +RM++ G S   STY  V+  L R G + Q+ K
Sbjct: 460 RDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEK 516



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 19/208 (9%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL--------SVLSDL 89
           Y  L+ A  + +       +  K     C  T  T+N I N    +        +++ D+
Sbjct: 182 YTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDM 241

Query: 90  -CRTLARLDKGFPRKSAYDTLIGRLCKLKKI-DEALRVVDIMAEGGFGLSAITFHPILSV 147
            C  LA      P    Y+TLI   C+   + +EAL + + +   GF   A+T++ +L V
Sbjct: 242 KCHGLA------PDLCTYNTLIS-CCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDV 294

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK-KMEEEKLGA 206
             + +R +EA  +++ M+     P +  YN L++AY  +G L   + VLK KM ++ +  
Sbjct: 295 YGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYV-RGGLLEDALVLKRKMVDKGIKP 353

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRM 234
           D  TY  L+ G   AG+ E A  +   M
Sbjct: 354 DVYTYTTLLSGFVNAGKEELAMEVFEEM 381



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/277 (19%), Positives = 116/277 (41%), Gaps = 19/277 (6%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           L  QS  V       G  P+E T   Y  L++A  + R++E     +N  A +    T  
Sbjct: 510 LWEQSEKVLAEMKDGGCKPNEVT---YSSLLHAYANGREVER----MNALAEEIYSGTIK 562

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKGF---------PRKSAYDTLIGRLCKLKKIDEA 122
           T   +  T   L +++     L   ++ F         P  +  + ++    + K + +A
Sbjct: 563 THAVLLKT---LVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKA 619

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
             +++ M E G  LS  +++ ++ + +R +   ++  +   + +  + PD+ +YN ++ A
Sbjct: 620 NEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYA 679

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           YC    +     ++++M+      D  TY+  +          EA  ++R M+  G    
Sbjct: 680 YCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPN 739

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           ++TY  ++    +L    +A  FV   G  D ++  +
Sbjct: 740 HNTYNSIVDWYCKLKLRDEACSFVQNLGDLDPQISED 776



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 3/151 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI       K +E ++V   +         +T++ +L+V  +     E  G+
Sbjct: 388 PNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGV 447

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK  R +P+   +N L++AY   G+        K+M E  +  D  TY+A++    R
Sbjct: 448 FEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLAR 507

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
            G  E++  +L  M D G     V YS+  H
Sbjct: 508 GGLWEQSEKVLAEMKDGGCKPNEVTYSSLLH 538



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 40/83 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++TLI    +    D+A+     M E G      T++ +L+ L RG   E++  +
Sbjct: 458 PERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKV 517

Query: 161 MEVMKEIRVSPDLTAYNYLLTAY 183
           +  MK+    P+   Y+ LL AY
Sbjct: 518 LAEMKDGGCKPNEVTYSSLLHAY 540



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 82/217 (37%), Gaps = 7/217 (3%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA 70
           L+  ++++ R     G  PD  T +      VNA   E  +E    +   R   C  N  
Sbjct: 335 LLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEM---RKVGCKPNIC 391

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDI 128
            TFN +           ++ +    +   K  P    ++TL+    +     E   V + 
Sbjct: 392 -TFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEE 450

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M    F     TF+ ++S   R    ++A    + M E  VSPDL+ YN +L      G 
Sbjct: 451 MKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGL 510

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              +  VL +M++     +  TY +L+        VE
Sbjct: 511 WEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVE 547



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S    ++  L K  ++  A  ++  +   GF +    +  +++     K+  +A  +   
Sbjct: 145 SVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGK 204

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTA-TSGVLKKMEEEKLGADARTYDALVLGACRAG 222
           MKE+   P L  YN +L  Y   G   A    +++ M+   L  D  TY+ L+   CRAG
Sbjct: 205 MKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLI-SCCRAG 263

Query: 223 RV-EEAFVLLRRM 234
            + EEA  L   +
Sbjct: 264 SLYEEALDLFEEI 276


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 76/159 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           +D ++   C+L+ +DEA+    +M E GF     T + ILS+L+R  R+E AW     M 
Sbjct: 159 FDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMY 218

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            + +  ++  +N ++   C +G L    G L  ME   +     TY+ LV G    GR+E
Sbjct: 219 RMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIE 278

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            A +++  M   G      TY  ++  +   G  ++ ++
Sbjct: 279 GARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASEVLR 317



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 6/206 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETV---RYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           P S  Y+ L+    +  DLET    R  + K+     F T NT       EN +     L
Sbjct: 326 PDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEIL 385

Query: 90  CRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            R +   +KG    S  Y+ +I   C+     +A  + D M   G   +  T+  ++ VL
Sbjct: 386 IREIR--EKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVL 443

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            R  +  EA  L E +    + PDL   N L+  +C  GN+     +LK+M+   +  D 
Sbjct: 444 CRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDD 503

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRM 234
            TY+ L+ G C  G+ EEA  L+  M
Sbjct: 504 VTYNCLMRGLCGEGKFEEARELMGEM 529



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 98/215 (45%), Gaps = 8/215 (3%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVLTRGKRM 154
           KGF P    Y+ ++  +C   +  E LR +      G GL   +++++ ++   +    +
Sbjct: 290 KGFQPDLQTYNPILSWMCNEGRASEVLREMK-----GIGLVPDSVSYNILIRGCSNNGDL 344

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E A+   + M +  + P    YN L+     +  + A   +++++ E+ +  D+ TY+ +
Sbjct: 345 ETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIV 404

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ G  ++AF L   M+ DG      TY  ++  L R     +A +      G+ +
Sbjct: 405 INGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGM 464

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           K D  +  +L          + A  +LKEM++ ++
Sbjct: 465 KPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNI 499



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 112/272 (41%), Gaps = 24/272 (8%)

Query: 3   LLRKLPTKFLIPQSV---LVTRSFTKSG------AFPDE-------PTSAYYDDLVNAAG 46
           +LR++    L+P SV   ++ R  + +G      A+ DE       PT   Y+ L++   
Sbjct: 315 VLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLF 374

Query: 47  HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-----P 101
            E  +E    L+ +         + T+N + N         D  +  A  D+       P
Sbjct: 375 MENKIEAAEILIREIREKGIVLDSVTYNIVIN---GYCQHGDAKKAFALHDEMMTDGIKP 431

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
            +  Y +LI  LC+  K  EA  + + +   G     +  + ++        M+ A+ L+
Sbjct: 432 TQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLL 491

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           + M  + + PD   YN L+   C +G       ++ +M+   +  D  +Y+ L+ G  + 
Sbjct: 492 KEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKK 551

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           G  + AF++   M+  G +    TY  ++  L
Sbjct: 552 GDTKHAFIVRDEMLSLGFNPTLLTYNALLKGL 583



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 66/153 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     +TL+   C    +D A  ++  M         +T++ ++  L    + EEA  L
Sbjct: 466 PDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEAREL 525

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  MK   + PD  +YN L++ Y  KG+      V  +M          TY+AL+ G  +
Sbjct: 526 MGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSK 585

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
               E A  LLR M  +G     S++  V+ A+
Sbjct: 586 NQDGELAEELLREMKSEGIVPNDSSFCSVIEAM 618


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 11/269 (4%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           S++  L  +  + Q+  + R   K G    +P +  Y  L+N      +    R ++N  
Sbjct: 385 SVINGLCQERKVDQAKKMLRQMYKHGC---KPNTVSYTALLNGLCKNGNSLEAREMMNMS 441

Query: 62  ARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLK 117
             D     A T++ + +    E   S   DL R +  + KGF P     + LI  LC+ +
Sbjct: 442 EEDWWIPNAITYSVLMHGFRREGKSSEACDLVREM--IKKGFFPTPVEINLLIQSLCQEE 499

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+DEA R ++     G  ++ + F  ++    +   +E A  L++ M      PD+  Y 
Sbjct: 500 KVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYT 559

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++ A   KG +   + +  KM    L     TY  ++   CR GRVE+   LL +M+  
Sbjct: 560 TIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSR 619

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            +    + Y  V+  L   G   QA K +
Sbjct: 620 QEC--RTAYNQVIEKLCSFGNLEQAYKLL 646



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 98/207 (47%), Gaps = 7/207 (3%)

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
           R  A+  ++    +  K+  A+RV+ +M + G        +  + VL  G R+++A   +
Sbjct: 168 RPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFL 227

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           E M+ + + P++  YN L+  YC    L     ++ +M  +    D  +Y  ++   C+ 
Sbjct: 228 ERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKE 287

Query: 222 GRVEEAFVLLRRMVDDGQ----SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            R++E  +L+ +M+ D       V Y+T+ H++    + G+  +A++F+     R  ++D
Sbjct: 288 KRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLS---KHGHGDEALEFLREAEERRFRVD 344

Query: 278 TELFGSLGSKLIGLERFNEANFILKEM 304
              + ++        R ++A  I+ EM
Sbjct: 345 KVGYSAIVHSFCREGRMDKAKEIVNEM 371



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 1/167 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   C L ++++A+ ++  M   G     I+++ ++  L + KR++E   L
Sbjct: 237 PNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLL 296

Query: 161 MEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ME M K+  + PD   YN  +      G+       L++ EE +   D   Y A+V   C
Sbjct: 297 MEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFC 356

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           R GR+++A  ++  M   G      TY  V+  L +     QA K +
Sbjct: 357 REGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKML 403



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 95/214 (44%), Gaps = 13/214 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCF----NTANTFNFITNT----ENSLS 84
           P    Y  ++     E+ ++ VR L+ K  +D        T NTF  + +     + +L 
Sbjct: 272 PDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALE 331

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
            L +      R+DK       Y  ++   C+  ++D+A  +V+ M   G     +T+  +
Sbjct: 332 FLREAEERRFRVDK-----VGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSV 386

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++ L + +++++A  ++  M +    P+  +Y  LL   C  GN      ++   EE+  
Sbjct: 387 INGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWW 446

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             +A TY  L+ G  R G+  EA  L+R M+  G
Sbjct: 447 IPNAITYSVLMHGFRREGKSSEACDLVREMIKKG 480



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 71/167 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P +  Y+T +  L K    DEAL  +    E  F +  + +  I+    R  RM++A  
Sbjct: 307 LPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKE 366

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M      PD+  Y  ++   C +  +     +L++M +     +  +Y AL+ G C
Sbjct: 367 IVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLC 426

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + G   EA  ++    +D       TY+ +M    R G  ++A   V
Sbjct: 427 KNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLV 473



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/247 (18%), Positives = 107/247 (43%), Gaps = 27/247 (10%)

Query: 17  VLVTRSFTKSGAFPDEPTSAYYDDLVNAAGH-ERDLETVRYLLNKRARDCCFNTANTFNF 75
           +L+ +    S   PD+ T   +  +++  GH +  LE +R    +R             F
Sbjct: 295 LLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERR-------------F 341

Query: 76  ITNTENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEAL 123
             +     +++   CR   R+DK              P    Y ++I  LC+ +K+D+A 
Sbjct: 342 RVDKVGYSAIVHSFCRE-GRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAK 400

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           +++  M + G   + +++  +L+ L +     EA  +M + +E    P+   Y+ L+  +
Sbjct: 401 KMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGF 460

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
             +G  +    ++++M ++         + L+   C+  +V+EA   + + +++G +V  
Sbjct: 461 RREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNV 520

Query: 244 STYAHVM 250
             +  V+
Sbjct: 521 VNFTTVI 527



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  ++  L K K    A RV+ +MA+         F  ++   +R  ++  A  ++ +M
Sbjct: 136 VYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMM 195

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++  + PDL+  N  +        L      L++M+  ++  +  TY+ L+ G C   R+
Sbjct: 196 QKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRL 255

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           E+A  L+  M   G S    +Y  VMG L +
Sbjct: 256 EDAMELIAEMPFKGCSPDKISYYTVMGFLCK 286


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 104/228 (45%), Gaps = 5/228 (2%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           ++LS+L D+ R   +     P    Y  L+  +C+    ++A+ V+D M   G   + +T
Sbjct: 161 DALSLLDDMLRRGCQ-----PNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVT 215

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ I++ + R  R+++A  L+  +      PD  +Y  LL   C          +  +M 
Sbjct: 216 YNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMM 275

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E+    +  T+D L+   CR G VE A  +L +M + G +   +    V+ ++ + G   
Sbjct: 276 EKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVD 335

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
            A K +   G      DT  + ++   L   ER+++A  +L EM + +
Sbjct: 336 DAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNN 383



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 4/238 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLC 90
           +P    Y  L+ A       E    +L++ RA+ C  N   T+N I N       + D  
Sbjct: 175 QPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIV-TYNVIINGMCREGRVDDAR 233

Query: 91  RTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
             L RL   GF P   +Y TL+  LC  K+ D+   +   M E     + +TF  ++   
Sbjct: 234 ELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFF 293

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            RG  +E A  ++E M E   + + T  N ++ + C +G +     +L  M       D 
Sbjct: 294 CRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDT 353

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            +Y  ++ G CRA R ++A  LL  MV +       T+   +  L + G   QA+  +
Sbjct: 354 ISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLI 411



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 67/139 (48%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + +I  +CK  ++D+A ++++ M   G     I++  +L  L R +R ++A  L+  M  
Sbjct: 322 NIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVR 381

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
               P+   +N  +   C KG +     ++++M E        TY+ALV G C  G ++ 
Sbjct: 382 NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDS 441

Query: 227 AFVLLRRMVDDGQSVLYST 245
           A  L R M     ++ Y+T
Sbjct: 442 ALELFRSMPCKPNTITYTT 460



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY+TL+   C+   +D A R++  M        A T+ P++ VL    R+ +A  L++ M
Sbjct: 113 AYNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDM 169

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P++  Y  LL A C          VL +M  +    +  TY+ ++ G CR GRV
Sbjct: 170 LRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRV 229

Query: 225 EEAFVLLRRMVDDG---QSVLYST 245
           ++A  LL R+   G    +V Y+T
Sbjct: 230 DDARELLNRLPSYGFQPDTVSYTT 253



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 118/270 (43%), Gaps = 8/270 (2%)

Query: 7   LPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCC 66
           L  K LI Q++++    ++ G      T   Y+ LVN    +  +++   L   R+  C 
Sbjct: 398 LCQKGLIEQAIMLIEQMSEHGCTVGVVT---YNALVNGFCVQGHIDSALELF--RSMPCK 452

Query: 67  FNTANTFNFITNTENS--LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALR 124
            NT      +T   N+  L   ++L   + R D   P    ++ L+   C+   ++EA+ 
Sbjct: 453 PNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCP-PNVVTFNVLVSFFCQKGFLEEAIE 511

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +V+ M E G   + IT++ +L  +T+    E+A  L+  +    VSPD+  ++ ++    
Sbjct: 512 LVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILS 571

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            +  +     +   +++  +   A  Y+ ++LG C+   ++ A      MV +G     S
Sbjct: 572 KEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNES 631

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           TY  ++  L   G   +A   + V   R +
Sbjct: 632 TYIILIEGLAHEGLLKEAQDLLSVLCSRGV 661



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 102/244 (41%), Gaps = 5/244 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
           G++   P +  Y  ++         +  + LLN+  R+ C     TFN          ++
Sbjct: 345 GSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLI 404

Query: 87  SDLCRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
                 + ++ +         Y+ L+   C    ID AL +   M       + IT+  +
Sbjct: 405 EQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNTITYTTL 461

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L+ L   +R++ A  L+  M      P++  +N L++ +C KG L     ++++M E   
Sbjct: 462 LTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGC 521

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +  TY+ L+ G  +    E+A  LL  +V  G S    T++ ++G L +     +AV+
Sbjct: 522 TPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQ 581

Query: 265 FVMV 268
              V
Sbjct: 582 LFHV 585



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 3/200 (1%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           LI  LC+  +  +A RV+      G  +    ++ +++   R   ++ A  L+  M    
Sbjct: 82  LIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMP--- 138

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V+PD   Y  L+   C +G +     +L  M       +  TY  L+   CR    E+A 
Sbjct: 139 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAM 198

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            +L  M   G +    TY  ++  + R G    A + +        + DT  + +L   L
Sbjct: 199 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGL 258

Query: 289 IGLERFNEANFILKEMNKRD 308
              +R+++   +  EM +++
Sbjct: 259 CASKRWDDVEELFAEMMEKN 278


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K++EA  + + M + G   + +T
Sbjct: 184 LGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLK 197
           F  ++    +  +++ A   ME  K++      PDL  YN L+   C KG+L     +L 
Sbjct: 244 FTTLIDGHCKNGKVDSA---METYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLD 300

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M  + L  D  TY  L+ G C+ G ++ AF L   MV +   +    Y  ++  L + G
Sbjct: 301 EMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEG 360

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
               A K +       +K D   +  + ++    E    A  +LKEM ++
Sbjct: 361 RATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQ 410



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 91/210 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    +L  +D+  ++ + M   G      T+  +++ L +  +M EA  L
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P+   +  L+  +C  G + +     K+M  +    D  TY+ L+ G C+
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  LL  M   G      TY  ++    + G    A +         I+LD   
Sbjct: 289 KGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRATDAEKMLREMLSVGLK 378



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK  +I  A  V D + + G   S ++F+ +++   R   +
Sbjct: 128 LECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++ + L   M    V PD+  Y+ L+   C +  +   + +  +M ++ L  +  T+  L
Sbjct: 188 DQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C+ G+V+ A    ++M+         TY  ++  L + G   QA
Sbjct: 248 IDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQA 295



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 20/217 (9%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANT-FN------FITNTENSLSVLSDLCRTLA 94
           ++A+G + D+ T   L+N   ++   N AN  FN       + N     +++   C+   
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKN-G 255

Query: 95  RLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           ++D               P    Y+TLI  LCK   + +A  ++D M   G     IT+ 
Sbjct: 256 KVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYT 315

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            ++    +   ++ A+ L E M +  +  D  AY  L++  C +G  T    +L++M   
Sbjct: 316 TLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSV 375

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
            L  D  TY  ++   C+   V+ A  LL+ M   G 
Sbjct: 376 GLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGH 412


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 82/166 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++LI + C +K++D+A   V  MAE G   S  T++ ++    +    +  + +
Sbjct: 419 PNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQI 478

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M+EI V P++ +Y  L+   C  G +     VL+ M    +  +A+ Y+ L+ G+C 
Sbjct: 479 LEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCM 538

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G+V++A      M+    S    TY  ++  L + G   +A  F+
Sbjct: 539 VGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFL 584



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 107/245 (43%), Gaps = 41/245 (16%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LIG LC+ K+I +A ++ D M       S +T++ ++    +   ++ A+ +
Sbjct: 209 PNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKM 268

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY--------- 211
            E MKE  V+P++  +N LL+  C    +     +LK+ME      D  TY         
Sbjct: 269 RERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLR 328

Query: 212 --------------------------DALVLGACRAGRVEEAFVLLRRMVDDG---QSVL 242
                                       L+ G C+ G+VE+A  +L++  ++G     V+
Sbjct: 329 CDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVI 388

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
           Y+T+ +      R+G   +A+  +       ++ ++  F SL  K   ++  ++A   +K
Sbjct: 389 YNTFVN---GYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVK 445

Query: 303 EMNKR 307
           +M ++
Sbjct: 446 KMAEK 450



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 2/232 (0%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
           +F   P S  ++ L++     ++++     + K A      +  T+N + +    L    
Sbjct: 414 SFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFD 473

Query: 88  DLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
              + L ++++ G  P   +Y +LI  LCK  KI EA  V+  M   G   +A  ++ ++
Sbjct: 474 RCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLI 533

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
                  ++++A    + M    +SP L  YN L+   C KG LT     L ++      
Sbjct: 534 DGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHS 593

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            D  TY++L+ G   AG V +   L   M + G      TY  ++    + G
Sbjct: 594 PDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG 645



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 85  VLSDL-CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           VL D+ CR +       P    Y+ LI   C + K+ +ALR  D M       + +T++ 
Sbjct: 513 VLRDMICRGV------LPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNV 566

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++  L +  ++ EA   +  +     SPD+  YN L++ Y   GN++   G+ + M+   
Sbjct: 567 LIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLG 626

Query: 204 LGADARTYDALVLGACRAG--RVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +    RTY  L+ G  + G   VE+ +  + +M      V+Y+   H
Sbjct: 627 IKPTVRTYHPLISGCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIH 673



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 75/150 (50%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y   I    KL+ +   +  +D M + G   +   ++ ++  L R KR+ +A  + + M 
Sbjct: 179 YAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMC 238

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            I +   +  YN L+  YC  G L A   + ++M+E+ +  +  T+++L+ G C+  +++
Sbjct: 239 NINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMK 298

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           EA  LL+ M  +G      TY+ +   LLR
Sbjct: 299 EARSLLKEMEVNGFMPDGYTYSILFDGLLR 328



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 110/263 (41%), Gaps = 5/263 (1%)

Query: 3   LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
           LL  L  +  + ++  + + FT++G   DE     Y+  VN      D+      + +  
Sbjct: 357 LLNGLCKQGKVEKAEEILKKFTENGLVADE---VIYNTFVNGYCRIGDMNKAILTIERME 413

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKID 120
                  + TFN + +    +  +      + ++ +KG  P    Y+TLI    KL   D
Sbjct: 414 SFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFD 473

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
              ++++ M E G   + +++  +++ L +  ++ EA  ++  M    V P+   YN L+
Sbjct: 474 RCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLI 533

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
              C  G +        +M   ++     TY+ L+ G C+ G++ EA   L ++   G S
Sbjct: 534 DGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHS 593

Query: 241 VLYSTYAHVMGALLRLGYYAQAV 263
               TY  ++      G  ++ +
Sbjct: 594 PDVITYNSLISGYANAGNVSKCL 616



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 88/210 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++L+  LCK++K+ EA  ++  M   GF     T+  +   L R      A  L
Sbjct: 279 PNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMEL 338

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E   E  +  +    + LL   C +G +     +LKK  E  L AD   Y+  V G CR
Sbjct: 339 YEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCR 398

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + +A + + RM   G      T+  ++     +    +A ++V     + +    E 
Sbjct: 399 IGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVET 458

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L      L  F+    IL++M +  +K
Sbjct: 459 YNTLIDGYGKLCTFDRCFQILEQMEEIGVK 488



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 1/204 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK  K+ EA   +  +   G     IT++ ++S       + +  GL
Sbjct: 559 PTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGL 618

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK + + P +  Y+ L++  C K  +     +  +M +  L  D   Y+A++     
Sbjct: 619 YETMKNLGIKPTVRTYHPLISG-CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAE 677

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  ++A+ L + M+D G      TY  ++    R G  +     V     +++    + 
Sbjct: 678 IGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADT 737

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L      L+ F+ A    +EM
Sbjct: 738 YDILVKGHCDLKDFSGAYVWYREM 761



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C  + I+   ++ + M +       + ++ ++         ++A+ L
Sbjct: 629 PTVRTYHPLISG-CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSL 687

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + PD   YN L+  +  +G L+    ++  M+ ++L   A TYD LV G C 
Sbjct: 688 HQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCD 747

Query: 221 AGRVEEAFVLLRRMVDD 237
                 A+V  R MV++
Sbjct: 748 LKDFSGAYVWYREMVEN 764



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/137 (19%), Positives = 60/137 (43%), Gaps = 3/137 (2%)

Query: 123 LRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           ++VVD+  E    GF      +   +    + + ++     ++ M++  V P++  YN L
Sbjct: 158 VKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVL 217

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C +  +     +  +M    L     TY+ L+ G C+ G ++ AF +  RM +   
Sbjct: 218 IGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSV 277

Query: 240 SVLYSTYAHVMGALLRL 256
           +    T+  ++  L ++
Sbjct: 278 APNIITFNSLLSGLCKM 294


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 38/190 (20%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TLI  LCK ++++EAL +   M       +  T+  ++  L    R +EA  L+  M
Sbjct: 117 TYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEM 176

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA----------- 213
             + + P++  +N L+  +C +G + A  GVLK M E  +  D  TY++           
Sbjct: 177 TSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEV 236

Query: 214 ------------------------LVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTY 246
                                   L+ G C+A R++EA  L   M+  G +   V Y+T 
Sbjct: 237 VEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTL 296

Query: 247 AHVMGALLRL 256
            H +  L RL
Sbjct: 297 IHGLCQLGRL 306



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TLI  LC+L ++ EA  +   M   G   +  T+  +L    +   + +A+ L
Sbjct: 288 PNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRL 347

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+   + P+L  YN L+ A C  GNL     +  ++    L  + + Y  ++ G C+
Sbjct: 348 FRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCK 407

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G ++EA    R M DDG      +Y  ++   L+    ++AV  +
Sbjct: 408 EGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLI 453



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 74/165 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+   CK  K+  A  V+  M E G     +T++ ++   +    + EA  L
Sbjct: 183 PNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKL 242

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +VM      PD+ +Y+ L+  YC    +     +  +M  +    +  +Y+ L+ G C+
Sbjct: 243 FDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQ 302

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            GR+ EA  L + M  +G      TYA ++    + GY  +A + 
Sbjct: 303 LGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRL 347



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 86/204 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK+ +   A  +   M E G  L+ +T+  ++  L + +R+ EA  +
Sbjct: 78  PDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDI 137

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK   +SP +  Y  L+   C        S +L +M    +  +  T++ LV   C+
Sbjct: 138 FSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCK 197

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V  A  +L+ M + G      TY  +M          +A K   V   +  K D   
Sbjct: 198 EGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFS 257

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           +  L +     +R +EA  +  EM
Sbjct: 258 YSILINGYCKAKRIDEAKQLFNEM 281



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  LI   CK K+IDEA ++ + M   G   + ++++ ++  L +  R+ EA  L
Sbjct: 253 PDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDL 312

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P+L  Y  LL  +C +G L     + + M+   L  +   Y+ LV   C+
Sbjct: 313 FKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCK 372

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +G +++A  L   +   G       Y  ++  L + G   +A++
Sbjct: 373 SGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALE 416



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 67/162 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI   C+L+++D    V+    + G   + +TF  +++ L +  +  +A  L
Sbjct: 8   PNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVEL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      PD   Y  ++   C  G     +G+ KKMEE     +  TY  L+   C+
Sbjct: 68  FDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCK 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             RV EA  +   M     S    TY  ++  L     + +A
Sbjct: 128 YRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEA 169



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 12/165 (7%)

Query: 82  SLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           +L++L +    L R+D GF            P    + TLI  L K+ K  +A+ + D M
Sbjct: 12  TLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDM 71

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G      T+  I++ L +      A GL + M+E     ++  Y+ L+ + C    +
Sbjct: 72  VARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRV 131

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
                +   M+ + +     TY +L+ G C   R +EA  LL  M
Sbjct: 132 NEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEM 176



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/181 (18%), Positives = 73/181 (40%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   +  T + +++   + +R++  + ++    ++ + P +  +  L+      G 
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
                 +   M       D  TY  ++ G C+ G    A  L ++M + G  +   TY+ 
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYST 120

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++ +L +     +A+        +DI      + SL   L    R+ EA+ +L EM   +
Sbjct: 121 LIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLN 180

Query: 309 L 309
           +
Sbjct: 181 I 181


>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 112/260 (43%), Gaps = 12/260 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDC-----CFNT-ANTFNFITNTENSLS 84
           +P    ++ L+ A  H+++ E  R +++  RA         +NT A  F  +    ++ +
Sbjct: 128 KPNDRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAEN 187

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           V++++     R     P +  Y  +I       +IDE+LR+++ M   G   +   F+ +
Sbjct: 188 VITEMQNVYLR-----PNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHL 242

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +   +   +  +   + ++M+   V PD+  +  ++ A+C  G +     VL +M+E  L
Sbjct: 243 VKGYSESMKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDL 302

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D   Y  LV G  R GR EE    L  M+D+       TY  V+     L     A++
Sbjct: 303 QPDVMAYSILVKGYSRQGRPEEGEAFLNIMIDENLKPNVITYTTVISGYCSLAQMDDAMR 362

Query: 265 FVMVCGGRDIKLDTELFGSL 284
                  R +  + + F +L
Sbjct: 363 VFQEMRSRSVFPNMQTFRTL 382



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWGLME 162
           S+Y+TLI       + +EA++++  MA+      +  TF+ ++      K  E+A  ++ 
Sbjct: 96  SSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAHDKNPEKARNVIS 155

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
           +M+   V PD+ +YN L   +   G       V+ +M+   L  + RTY  ++ G   AG
Sbjct: 156 MMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNERTYGIVINGYIAAG 215

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           +++E+  L+ RM  DG S   + + H++          +  K   +     +K D + FG
Sbjct: 216 QIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKLMENFGVKPDVQTFG 275

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDLK 310
            + +        +EA  +L  M + DL+
Sbjct: 276 LIMNAWCSTGLIDEAKAVLLRMKEYDLQ 303



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 120/283 (42%), Gaps = 13/283 (4%)

Query: 35  SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN-TFNFIT-------NTENSLSVL 86
           ++ Y+ L+   G +   E    LL + A+D      + TFN +        N E + +V+
Sbjct: 95  TSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAHDKNPEKARNVI 154

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           S     + R     P   +Y+TL     KL K  +A  V+  M       +  T+  +++
Sbjct: 155 S-----MMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNERTYGIVIN 209

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
                 +++E+  L+E MK   +SP +  +N+L+  Y           V K ME   +  
Sbjct: 210 GYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKLMENFGVKP 269

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D +T+  ++   C  G ++EA  +L RM +         Y+ ++    R G   +   F+
Sbjct: 270 DVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFL 329

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +    ++K +   + ++ S    L + ++A  + +EM  R +
Sbjct: 330 NIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRSRSV 372



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  +LS L    R+ E   L++ M+E  V PD   +N LL  YC  G +     ++ +M
Sbjct: 27  TYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNGYCEAGKMKEAEALVLEM 86

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS--------VLYSTYAH 248
           +E        +Y+ L+ G    G+ EEA  LL+ M  D  S        +L   +AH
Sbjct: 87  KERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAH 143



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%)

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P    Y  LL++    G L     +L++MEE+ +  DA  ++ L+ G C AG+++EA  L
Sbjct: 23  PAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNGYCEAGKMKEAEAL 82

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  M + G  ++ S+Y  ++      G   +A+K +
Sbjct: 83  VLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLL 118



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R D   P K  Y  L+  L    ++ E   ++  M E      AI F+ +L+      +M
Sbjct: 17  RRDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNGYCEAGKM 76

Query: 155 EEAWGLMEVMKEIRVSPDLTA-YNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYD 212
           +EA  L+  MKE R  P +T+ YN L+  Y   G       +L++M ++     + RT++
Sbjct: 77  KEAEALVLEMKE-RGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFN 135

Query: 213 ALVLGACRAGRVEEA--FVLLRRMVDDGQSVL-YSTYAHVMGAL 253
            L+         E+A   + + R    G  V+ Y+T A +   L
Sbjct: 136 MLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKL 179


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +  LD+GF  KS             Y  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 IGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  +   M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +        Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    K+  +DE  R+  +M   G      T+  +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + ++M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A ++       +I+ D   
Sbjct: 289 KGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LB G  P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +
Sbjct: 233 LBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDL 292

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL
Sbjct: 293 KQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTAL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKG 395



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 5/170 (2%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+   CK  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L  VM+   V PD+  Y+ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQA 262
           + G C+ GRV+ A  + R+M+   QS+L    TY  ++  L + G   QA
Sbjct: 248 IDGHCKNGRVDLAMEIYRQML--SQSLLPDLITYNTLIYGLCKKGDLKQA 295



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 20/217 (9%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTL 93
           ++ A+G   D+ T   L+N   ++   + AN           + N     +++   C+  
Sbjct: 196 VMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKN- 254

Query: 94  ARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
            R+D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+
Sbjct: 255 GRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITY 314

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M  
Sbjct: 315 TTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             L  +  TY  ++   C+ G V     LL+ M   G
Sbjct: 375 VGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXG 411



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   +I  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+B+G
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLBNG 236


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  L+  LCK KK++EAL ++D M   G   + + +  I+S + +  + + A  +   M 
Sbjct: 544 YSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMI 603

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                P  T Y   +++YC  G +     ++ +ME + +  D  TY+  + G    G ++
Sbjct: 604 SSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMD 663

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            AF  L+RM+D      Y TY  ++   L++
Sbjct: 664 RAFSTLKRMIDASCEPNYWTYWILLKHFLKM 694



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 1/200 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y  LI  LC+ + + EAL ++ +M + G  L+  T+  ++  L +  R+  A  ++E M
Sbjct: 162 SYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEM 221

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V P +  YN ++  YC  G +    G+   ME      D  TY+ L+ G C   + 
Sbjct: 222 PLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLC-GEKP 280

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA  LL   +  G +    T+ +++    +      A++        + KLD + +G L
Sbjct: 281 DEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVL 340

Query: 285 GSKLIGLERFNEANFILKEM 304
            + LI   RF EA   + EM
Sbjct: 341 INVLIKKCRFKEAKETVSEM 360



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 2/208 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P    +  +I   CK ++ID+ALRV   M      L    +  +++VL +  R +E
Sbjct: 293 RGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKE 352

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A   +  M    ++P++  Y  ++  YC  G + A   V + ME E    +A TY +L+ 
Sbjct: 353 AKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIY 412

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G  +  ++ +A  L+ +M +DG +    TY  ++    +   +  A +   +     +  
Sbjct: 413 GLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTP 472

Query: 277 DTELFGSLGSKLIGLERFNEA-NFILKE 303
           D + +  L   L    R  EA +F++++
Sbjct: 473 DEQAYNVLTHALCKSGRAEEAYSFLVRK 500



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 11/199 (5%)

Query: 74  NFITNTENSLSVLSD-LCRTLARLDKGFP---------RKSAYDTLIGRLCKLKKIDEAL 123
           N +T  E + +VL+  LC++  R ++ +           K  Y +L+    K    D A 
Sbjct: 468 NGLTPDEQAYNVLTHALCKS-GRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAA 526

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +++ M   G    + T+  +L  L + K++ EA  +++ M    V  ++ AY  +++  
Sbjct: 527 VLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEM 586

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
             +G       +  +M        A TY   +   C+ G++EEA  L+  M  DG +   
Sbjct: 587 IKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDV 646

Query: 244 STYAHVMGALLRLGYYAQA 262
            TY   +     +GY  +A
Sbjct: 647 VTYNVFINGCGHMGYMDRA 665



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 104/275 (37%), Gaps = 67/275 (24%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY  +I  + K  K D A  + + M   G   SA T+   +S   +  ++EEA  L+  M
Sbjct: 578 AYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEM 637

Query: 165 KEIRVSPDLTAYN----------------------------------YLLTAYCFKGNL- 189
           +   V+PD+  YN                                  ++L  +  K +L 
Sbjct: 638 ERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLV 697

Query: 190 ----TATSG------------VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
                 TSG            +L++M +  L   A TY +++ G C+A R+EEA VL   
Sbjct: 698 DAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDH 757

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELF---------- 281
           M     S     Y  ++     +  + +AV FV  M+  G    L++  +          
Sbjct: 758 MRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGD 817

Query: 282 ----GSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
                SL   L+G+E +N      K +N   LK G
Sbjct: 818 YDKAKSLFCDLLGMEDYNHNEVAWKILNDGLLKAG 852



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 1/155 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC  +K DEA  +++     GF  + ITF  I++   + +R+++A  +
Sbjct: 263 PDDWTYNILIYGLCG-EKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRV 321

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M       DL AY  L+     K         + +M    L  +   Y +++ G C+
Sbjct: 322 KTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCK 381

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G+V  A  + R M  +G      TY+ ++  L++
Sbjct: 382 VGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQ 416



 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 46/241 (19%), Positives = 88/241 (36%), Gaps = 34/241 (14%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI  LCK  +I  A RV++ M   G   S  T++ ++    +  RM++A G+  +M+
Sbjct: 198 YTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALME 257

Query: 166 EIRVSPDLTAYNYL----------------------------------LTAYCFKGNLTA 191
               +PD   YN L                                  +  YC    +  
Sbjct: 258 RNGCNPDDWTYNILIYGLCGEKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDD 317

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              V   M       D + Y  L+    +  R +EA   +  M  +G +     Y  ++ 
Sbjct: 318 ALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIID 377

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
              ++G    A++   +      + +   + SL   LI  ++ ++A  ++ +M +  +  
Sbjct: 378 GYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITP 437

Query: 312 G 312
           G
Sbjct: 438 G 438


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 2/279 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   ++ L++A    +  + V  L  K  R    +   T+N + N     S +S     
Sbjct: 83  PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142

Query: 93  LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L ++ K G+ P      +L+   C  K+I +A+ +VD M E G+    ITF  ++  L  
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             +  EA  L++ M +    P+L  Y  ++   C +G++     +L KME  K+ A+   
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  ++   C+    ++A  L   M + G      TY+ ++  L     ++ A + +    
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            R I  +   F +L    +   +  EA  +  EM KR +
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSI 361



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+TLI   CK K+IDE + +   M++ G   + +T+  ++    + +  + A  
Sbjct: 397 FPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 456

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + + M    V P++  YN LL   C  G L     V + ++  K+     TY+ ++ G C
Sbjct: 457 VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 516

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +AG+VE+ + L   +   G       Y  ++    R G   +A
Sbjct: 517 KAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEA 559



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LC  ++  +A R++  M E     + +TF+ ++    +  ++ EA  L
Sbjct: 293 PNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKL 352

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + PD+  Y+ L+  +C    L     + + M  +    +  TY+ L+ G C+
Sbjct: 353 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCK 412

Query: 221 AGRVEEAFVLLRRMVDD---GQSVLYSTYAH 248
           A R++E   L R M      G +V Y+T  H
Sbjct: 413 AKRIDEGVELFREMSQRGLVGNTVTYTTLIH 443



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y T+I  LCK +  D+AL +   M   G   + IT+  ++S L   +R  +A  L+  M 
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E +++P++  +N L+ A+  +G L     +  +M +  +  D  TY +L+ G C   R++
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA  +   M+         TY  ++    +     + V+       R +  +T  + +L 
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442

Query: 286 SKLIGLERFNEANFILKEM 304
                    + A  + K+M
Sbjct: 443 HGFFQARDCDNAQMVFKQM 461



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 22/219 (10%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  L+N       L+  +++        CF    T+N         ++++  C+
Sbjct: 362 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN---------TLINGFCK 412

Query: 92  TLARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
              R+D+G                  Y TLI    + +  D A  V   M   G   + +
Sbjct: 413 A-KRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T++ +L  L +  ++E+A  + E ++  ++ P +  YN ++   C  G +     +   +
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
             + +  D   Y+ ++ G CR G  EEA  L R+M +DG
Sbjct: 532 SLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 7/220 (3%)

Query: 47  HERD-LETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL--DKGFPRK 103
           HE D L     + NK  R      ++  + + N E      SD  R L+ +   K  P  
Sbjct: 275 HEDDALNLFTEMENKGVRPNVITYSSLISCLCNYER----WSDASRLLSDMIERKINPNV 330

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
             ++ LI    K  K+ EA ++ D M +        T+  +++      R++EA  + E+
Sbjct: 331 VTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 390

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M      P++  YN L+  +C    +     + ++M +  L  +  TY  L+ G  +A  
Sbjct: 391 MISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARD 450

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            + A ++ ++MV DG      TY  ++  L + G   +A+
Sbjct: 451 CDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 490



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    ++ L+  + K+KK D  + + + M   G   +  T++ +++   R  ++  A
Sbjct: 80  RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 139

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M ++   P +   + LL  YC    ++    ++ +M E     D  T+  L+ G
Sbjct: 140 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 199

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
                +  EA  L+ RMV  G      TY  V+  L + G
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 94/208 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI  L    K  EA+ +VD M + G   + +T+  +++ L +   ++ A+ L
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL 247

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+  ++  ++  Y+ ++ + C   +      +  +ME + +  +  TY +L+   C 
Sbjct: 248 LNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCN 307

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R  +A  LL  M++   +    T+  ++ A ++ G   +A K       R I  D   
Sbjct: 308 YERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 367

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + SL +     +R +EA  + + M  +D
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKD 395



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 70/149 (46%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+D+A+ +   M +     S   F+ +LS + + K+ +    L E M+ + +S +L  YN
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C +  ++    +L KM +        T  +L+ G C   R+ +A  L+ +MV+ 
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           G      T+  ++  L      ++AV  V
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALV 213



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/204 (18%), Positives = 86/204 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   C   ++DEA  + ++M       + +T++ +++   + KR++E   L
Sbjct: 363 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVEL 422

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  +  +   Y  L+  +    +      V K+M  + +  +  TY+ L+ G C+
Sbjct: 423 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 482

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E+A V+   +          TY  ++  + + G              + +K D  +
Sbjct: 483 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVII 542

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + ++ S         EA+ + ++M
Sbjct: 543 YNTMISGFCRKGLKEEADALFRKM 566


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 1/173 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + +LI   C+  ++D+A+R+   M +     +  TF  I+  L +  R  EA G 
Sbjct: 357 PDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGF 416

Query: 161 M-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + E+     ++P    YN ++   C  G +   + ++  MEE+    D  TY  L++G C
Sbjct: 417 LRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHC 476

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
             GR+ EA  L  +MV+ G      T    +  +L+ G   +  + +++  G 
Sbjct: 477 MKGRIPEAITLFHKMVETGCRPDKITVNSFISCVLKAGMPNEVDQIMLIASGH 529



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           DL R L R     P    Y ++I   CK  ++++AL V + M E G   + +T++ +++ 
Sbjct: 274 DLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLING 333

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             +   ME A  +   +   R  PD+  ++ L+  YC  G L     + K+M +  +  +
Sbjct: 334 YGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPN 393

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRM 234
             T+  ++   C+  R  EA   LR +
Sbjct: 394 VYTFSIIIHSLCKQNRSAEALGFLREL 420



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 1/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++ +I  +C++    +AL +V+ M E G     IT + ++  L R K++     L
Sbjct: 216 PDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDL 275

Query: 161 MEVMKEIRVS-PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +  ++   V  P++  Y  +++ YC  G +     V   M E     +  TY+ L+ G  
Sbjct: 276 LRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYG 335

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +A  +E A  + R+++         T++ ++    R G    A++     G   I+ +  
Sbjct: 336 KALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVY 395

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
            F  +   L    R  EA   L+E+N R
Sbjct: 396 TFSIIIHSLCKQNRSAEALGFLRELNMR 423



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV-MKEIRVSPDLTAYN 177
           +D A+ ++   ++ G  +    ++ +L++L    R ++A  L E  +++   SPD  ++N
Sbjct: 163 LDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFN 222

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++   C  GN      ++++M E     D  T++ LV G CRA +V     LLRR+  D
Sbjct: 223 VVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRD 282

Query: 238 GQSVL-YSTYAHVMGALLRLG 257
           G  +    TY  V+    + G
Sbjct: 283 GVCMPNVVTYTSVISGYCKAG 303


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 75/147 (51%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  LI   C +   ++A+ + + M + G    AI ++ ++S  ++  RM +A  ++  +K
Sbjct: 492 YTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELK 551

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           ++ + PD   YN L+  +C          +LK+MEE  L  D  TY+ L+  A + G ++
Sbjct: 552 KLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLK 611

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            A  ++R+M+  G     +TY  V+ A
Sbjct: 612 FAQKVMRKMIKAGVVPTVATYGAVINA 638



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 3/219 (1%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           Y  L+NA  +  + E    L N+  +  C   A  +  + +  +    ++D    LA L 
Sbjct: 492 YTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELK 551

Query: 98  K-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           K G  P    Y+TLIG  C+  K      ++  M E G     IT++ +++  ++   ++
Sbjct: 552 KLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLK 611

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME-EEKLGADARTYDAL 214
            A  +M  M +  V P +  Y  ++ AYC  GN      + K M+   K+  +   Y+ L
Sbjct: 612 FAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNIL 671

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +   C+  +V+ A  L+  M   G +   +TY  +   L
Sbjct: 672 INSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGL 710



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 109/275 (39%), Gaps = 45/275 (16%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA----EGGFG 135
           E + + +++L   +  +D   P    +  LI  +CK +++D+AL V++ M+     GG  
Sbjct: 318 EGNFNRMNELMEKMVEMDIQ-PNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGIS 376

Query: 136 LSA----ITFHPILSVLTRGKRMEEAWGLMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLT 190
           +S     + ++ ++  L +  R +E  GLME M+  +  +PD   YN L+  +C  G + 
Sbjct: 377 VSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIE 436

Query: 191 ATSGVLKKMEEEKLG-----------------------------------ADARTYDALV 215
               +  +M +E +                                     DA TY AL+
Sbjct: 437 KGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALI 496

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
              C     E+A  L   M+  G S     Y  ++    + G  A A   +       I+
Sbjct: 497 NAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIR 556

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            DT  + +L        +F+    +LKEM +  LK
Sbjct: 557 PDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLK 591



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 44/242 (18%)

Query: 109 LIGRLCKLKKIDEAL-----------------------------------RVVDIMAEGG 133
           LI RLC+ +K +                                       +++ M E  
Sbjct: 276 LITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMD 335

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMK--------EIRVSPDLTAYNYLLTAYCF 185
              + +TF  +++ + + +R+++A  ++E M          + V PD+  YN L+   C 
Sbjct: 336 IQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCK 395

Query: 186 KGNLTATSGVLKKMEEEK-LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
            G      G++++M  +K    D  TY+ L+ G C+AG +E+   L   M  +G +    
Sbjct: 396 VGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVV 455

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           T   ++G + R G  + AV F +    R +K D   + +L +    +  F +A  +  EM
Sbjct: 456 TVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEM 515

Query: 305 NK 306
            K
Sbjct: 516 LK 517



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 6/187 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CK  +I++   + D M + G   + +T + ++  + R  R+  A   
Sbjct: 417 PDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNF 476

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
               +   +  D   Y  L+ A+C   N      +  +M +     DA  Y  L+ G  +
Sbjct: 477 FVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQ 536

Query: 221 AGRVEEA-FVL--LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
           AGR+ +A FVL  L+++     +V Y+T   ++G   R   + +  + +       +K D
Sbjct: 537 AGRMADASFVLAELKKLGIRPDTVCYNT---LIGGFCRTNKFHRVFEMLKEMEEAGLKPD 593

Query: 278 TELFGSL 284
           T  + +L
Sbjct: 594 TITYNTL 600



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%)

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           DE + +V    E G  +S+     +++ L R ++    W L   M ++    +  A N L
Sbjct: 252 DEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSL 311

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           LT    +GN    + +++KM E  +  +  T+  L+   C+  RV++A  +L +M    +
Sbjct: 312 LTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKE 371

Query: 240 S 240
           S
Sbjct: 372 S 372


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 104/228 (45%), Gaps = 2/228 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y  L++A       +    + ++     C  + + +  + N   S+  L +  +
Sbjct: 291 KPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALK 350

Query: 92  TLA-RLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                 + GFP +    + +IG  C+  +   A ++VD M + G G +  T+  IL+ L 
Sbjct: 351 YFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLI 410

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + +++EEA+ L + M+     P+L  Y  ++  +C    +     V K+M+E+ +     
Sbjct: 411 KSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMH 470

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            + AL+ G C   R+EEA V  + M+D G       ++++  AL+  G
Sbjct: 471 MFSALINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGG 518



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 109/283 (38%), Gaps = 26/283 (9%)

Query: 38  YDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL 96
           + +L+ A G  +    V  L+   R R C   + +TF  I         + +   T  ++
Sbjct: 157 FHNLIEALGKIKQFRLVWSLVEAMRCRSCL--SKDTFKIIVRRYARARKVKEAVETFEKM 214

Query: 97  DKGFPRK---SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
              F  K   S Y+ LI  L K K++ +A  +   M   G       F P L   T    
Sbjct: 215 S-SFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKG------RFIPDLKTYTV--- 264

Query: 154 MEEAWG----------LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           + E WG          + + M +  + PD+ AY  L++A+C  G       V  +MEE  
Sbjct: 265 LMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESG 324

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
                  Y  L+ G     R++EA    +   + G  +   T   V+GA  R   +  A 
Sbjct: 325 CMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAF 384

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           K V       I  +T  +  + + LI  E+  EA  + + M +
Sbjct: 385 KMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMER 427



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 45/100 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y  ++G  C  +++D AL+V   M E G       F  +++ L    R+EEA   
Sbjct: 432 PELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVY 491

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
            + M +  + P    ++ L  A    G +T    V +++E
Sbjct: 492 FQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLE 531


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 93/196 (47%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           LI  LCK  K+DEA  +   M      LS   ++ ++S   R   +++A+ ++  M+   
Sbjct: 339 LIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNG 398

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             PD+  YN LL  YC  G +     +++KME   +  D  +Y+ L+ G C+  ++++AF
Sbjct: 399 CEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAF 458

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
             +   ++ G      +   ++ A  +      A++     G + ++ D   +G+L + L
Sbjct: 459 AFVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGL 518

Query: 289 IGLERFNEANFILKEM 304
             +  +N A  + ++M
Sbjct: 519 FSVGYYNLAEELFEQM 534



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 21/262 (8%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NF 75
           + ++G F  +     +D++V +   E  ++  RY+     ++CCF+    +        F
Sbjct: 168 YVRAGKF--DSVIETFDEMVMSGCREFGVDYNRYI-GVLVKNCCFDLVEKYYDMALAKGF 224

Query: 76  ITNTENSLSVLSDLCRT---------LARLDK--GFPRKSAYDTLIGRLCKLKKIDEALR 124
                     +S LC++         L  +DK    P   A +  I  LCK  ++ +AL+
Sbjct: 225 CLTPFTYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRLPDALQ 284

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +V+ M   G     +T+  ++S L   K+  EA GL E M +  + PD+ +   L+   C
Sbjct: 285 MVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGLC 344

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
               +     +  +M    +      Y+AL+ G  RAG +++A+ ++  M  +G      
Sbjct: 345 KNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIV 404

Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
           TY  ++     +G   +A K +
Sbjct: 405 TYNILLNHYCTIGMMEKAEKLI 426



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 13/186 (6%)

Query: 84  SVLSDLCRTLARLDKGFPRKSAY------------DTLIGRLCKLKKIDEALRVVDIMAE 131
            +L  LC+T  +LDK F   S +            + LI   CK KK+  AL +   M  
Sbjct: 443 QLLKGLCKT-HQLDKAFAFVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGY 501

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G    A+T+  +++ L        A  L E M   ++ P++  YN +L   C  G+   
Sbjct: 502 KGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKR 561

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +   M ++++  D  T++ L+    +  R  EA  L + M   G      T+ +++ 
Sbjct: 562 AQTIFSHMIQKEVSPDTVTFNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLIS 621

Query: 252 ALLRLG 257
            LL  G
Sbjct: 622 GLLDEG 627



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+   C +  +++A +++  M   G      +++ +L  L +  ++++A+  
Sbjct: 401 PDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAF 460

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +    E+    D  + N L+ A+C    + +   + K+M  + + ADA TY  L+ G   
Sbjct: 461 VSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFS 520

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G    A  L  +M++       + Y  ++  L ++G++ +A         +++  DT  
Sbjct: 521 VGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVT 580

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F +L   L    R  EA  + K+M  R ++
Sbjct: 581 FNTLIYWLGKRSRAIEALNLFKDMRTRGVE 610



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 80/199 (40%), Gaps = 7/199 (3%)

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME--EAWG 159
            +S Y  L+    +  K D  +   D M   G     + ++  + VL +    +  E + 
Sbjct: 157 HRSLYRILLSGYVRAGKFDSVIETFDEMVMSGCREFGVDYNRYIGVLVKNCCFDLVEKYY 216

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            M + K   ++P    Y+  ++A C    +     +L  M++     D    +  +   C
Sbjct: 217 DMALAKGFCLTP--FTYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLC 274

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           +  R+ +A  ++ +M   G S    TY  V+  L     +A+A+        RD+K D  
Sbjct: 275 KQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDV- 333

Query: 280 LFGSLGSKLIGLERFNEAN 298
              S G+ + GL + N+ +
Sbjct: 334 --FSCGALIFGLCKNNKVD 350


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 98/208 (47%), Gaps = 1/208 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  +CK ++++E  ++ + M   G+  + ITF  ++  L R   +E+A  +
Sbjct: 218 PDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEV 277

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E    P+   Y  L++  C    +     + +KM +  +  DA  Y++L+ G C+
Sbjct: 278 FGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCK 337

Query: 221 AGRVEEAFVLLRRMVDD-GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            G ++EA  L R M    G      T+  ++    +LG   +A + V   G + +  D+ 
Sbjct: 338 RGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSC 397

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKR 307
            +  L + L    + +EA  + K+M ++
Sbjct: 398 TYRILIAGLSRATKLDEALEVYKQMREK 425



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 5/231 (2%)

Query: 76  ITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
           I   + SL +LS++      +    P   AY +L+  L K +++D A  + D M  GG  
Sbjct: 93  IGKLDESLKILSEMV-----MRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHH 147

Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
              + F+ ++  L +  ++++A    + M +    P++  YN LL   C  G L   + +
Sbjct: 148 PDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTL 207

Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             +M+      D  TY+ L+   C+A RVEE   L   M   G      T++ ++  L R
Sbjct: 208 FAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCR 267

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            G   +A++          K +   + +L S L   E+  +A  + ++M +
Sbjct: 268 TGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQ 318



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 1/161 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++ G+ P   +Y  LI  L K+ K+DE+L+++  M   G   S   +  ++  L + +R+
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A  L + M      PD   +  L+   C  G +   S   K+M +     +   Y+ L
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVL 191

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G C +G++E+A  L   M     S    TY  ++ A+ +
Sbjct: 192 LHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCK 232



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 102/265 (38%), Gaps = 51/265 (19%)

Query: 60  KRARDCC--FNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSA 105
           +R  + C  F       ++ N     +++  LCRT   L+K              P K  
Sbjct: 234 RRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRT-GELEKALEVFGSMLEAGCKPNKYT 292

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM-EVM 164
           Y TLI  LC+ +K+ +A  + + M +      A+ ++ +++   +   M+EA  L  E+ 
Sbjct: 293 YTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMS 352

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA------ 218
               + P +  +N L+  +C  G L   + ++ +M  + L AD+ TY  L+ G       
Sbjct: 353 GGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKL 412

Query: 219 -----------------------------CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                                        C+ G +++A+ +       G      T+  +
Sbjct: 413 DEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRIL 472

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDI 274
             +L++LG    A K +     RDI
Sbjct: 473 SESLIKLGRVEDAQKLMEPAKARDI 497



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 61/127 (48%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M +     +  T+  I+  L +  + EE++ ++E M     +PD+ A+N ++  +    N
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +     V + M E     D  +Y  L+ G  + G+++E+  +L  MV  GQ+     Y+ 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 249 VMGALLR 255
           ++ AL +
Sbjct: 121 LVRALAK 127



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 79/199 (39%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y ++I  L K  K +E+ +V++ M   G       F+ ++    R   ME+A  + + M 
Sbjct: 13  YSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMV 72

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E    PD  +Y+ L+      G L  +  +L +M         + Y +LV    +A RV+
Sbjct: 73  ESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVD 132

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A  L   M+  G       +  ++  L + G    A +          + +  ++  L 
Sbjct: 133 HASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLL 192

Query: 286 SKLIGLERFNEANFILKEM 304
             L    +  +AN +  EM
Sbjct: 193 HGLCSSGQLEQANTLFAEM 211



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 6/213 (2%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN--- 78
           S  ++G  P++ T   Y  L++       +   R L  K  + C    A  +N +     
Sbjct: 280 SMLEAGCKPNKYT---YTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYC 336

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
              S+     L R ++      P    ++TLI   CKL K+  A  +V  M   G    +
Sbjct: 337 KRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADS 396

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T+  +++ L+R  +++EA  + + M+E +   D  +    +   C  GN+     V + 
Sbjct: 397 CTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEA 456

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
             +     +  T+  L     + GRVE+A  L+
Sbjct: 457 TRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 489



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 72/162 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A++ ++    +   +++A  V   M E G+    +++H ++  L +  +++E+  +
Sbjct: 43  PDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKI 102

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M     +P + AY+ L+ A      +   S +  +M       D   +  L+LG C+
Sbjct: 103 LSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQ 162

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AG+V++A    ++M   G       Y  ++  L   G   QA
Sbjct: 163 AGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQA 204


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 3/195 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI  LC   K D+A  +   M   G   + I F+ +L+ L +   +  A  +
Sbjct: 446 PDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNI 505

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M  + V  D+  YN L+  YC  G +   + +L+ M  + +  +  TY+ ++ G C+
Sbjct: 506 FDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCK 565

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+E+AF L R+M   G +    TY+ ++  L +    A A +  +      IK D   
Sbjct: 566 NGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFD--- 622

Query: 281 FGSLGSKLIGLERFN 295
            G+    L+GL + N
Sbjct: 623 IGTYNIILLGLCQNN 637



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 13/217 (5%)

Query: 101 PRKSAYDTLI-GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P   +Y+T+I G L + +++D A  + D M + G     +T++ I+S L++ + M++A  
Sbjct: 200 PDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAV 259

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++  M +    P+   +N LL  YC  G      GV K+M  + +  D  TY+ L+   C
Sbjct: 260 VLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLC 319

Query: 220 RAGRVEEAFVLLRRMVDDGQ---SVLYSTYAH---VMGALLRLGYYAQAVKFVMVCGGRD 273
           + GR  EA  +   MV  G    S  Y T  H     G+L+++ +       +MV  G  
Sbjct: 320 KNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLD----MMVRNG-- 373

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           I+ D  +F  L        + ++A  +  +M ++ L 
Sbjct: 374 IQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLN 410



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 111/264 (42%), Gaps = 12/264 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
            P    Y+ +++A    R ++    +L +  ++       T N + +         +++ 
Sbjct: 235 SPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIG 294

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           V   +CR     D   P    Y+TL+G LCK  +  EA ++ D M + G   ++ T+  +
Sbjct: 295 VFKRMCR-----DGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTL 349

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L        + +   L+++M    + PD   +N L+  Y   G +     +  KM  + L
Sbjct: 350 LHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGL 409

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY  ++   C  G+V++A     R++ +G +     + +++  L     + +A +
Sbjct: 410 NPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEE 469

Query: 265 FVMVCGGRDIKLDTELFGSLGSKL 288
             +   GR I  +   F +L + L
Sbjct: 470 LAVEMIGRGICPNNIFFNTLLNHL 493



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+TLI   C   K+DEA ++++ M   G   + +T++ +++   +  R+E+A+ L   M 
Sbjct: 521 YNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMA 580

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK-KMEEEKLGADARTYDALVLGACRAGRV 224
              V+P +  Y+ +L    F+   TA +  L   M +  +  D  TY+ ++LG C+    
Sbjct: 581 SKGVNPGIVTYSTILQGL-FQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCT 639

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           ++A  + + +      +   T+  ++ ALL+ G + +A
Sbjct: 640 DDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEA 677



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 7/160 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I    ++  +D A   +  +   G+   AITF P+L  L   KR  EA  +
Sbjct: 89  PNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDI 148

Query: 161 -MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM---EEEKLG--ADARTYDAL 214
            +  M  +  +P++ +Y  LL   C +        +L  M   ++ + G   D  +Y+ +
Sbjct: 149 ALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTV 208

Query: 215 VLGACRAGR-VEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           + G  R GR ++ A+ L  +M+D G S    TY  ++ AL
Sbjct: 209 INGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISAL 248



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 1/203 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    Y+++I  L K + +D+A  V+  M + G   + IT + +L       + 
Sbjct: 230 LDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKP 289

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A G+ + M    V PD+  YN L+   C  G       +   M +     ++ TY  L
Sbjct: 290 NDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTL 349

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G    G + +   LL  MV +G    +  +  ++G   + G    A+        + +
Sbjct: 350 LHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGL 409

Query: 275 KLDTELFGSLGSKLIGLERFNEA 297
             DT  +G +   L  + + ++A
Sbjct: 410 NPDTVTYGIVMDALCMVGKVDDA 432



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 69/162 (42%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           LD   P +  Y+T+I   CK  +I++A  +   MA  G     +T+  IL  L + +R  
Sbjct: 546 LDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTA 605

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L   M +  +  D+  YN +L   C          + + +       + RT++ ++
Sbjct: 606 AAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMI 665

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
               + GR +EA  L   ++  G      TY  +M +L+  G
Sbjct: 666 DALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQG 707



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 1/161 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++  LC+    D+ALR+   +    F L   TF+ ++  L +G R +EA  L   + 
Sbjct: 626 YNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLL 685

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y  ++ +   +G L     +   +E+    A++R  +ALV    + G V 
Sbjct: 686 ARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVR 745

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A V L + +D+    L ++ A  +  L+  G Y Q +  +
Sbjct: 746 KAGVYLSK-IDENNFSLEASTAESLVLLVSSGKYDQHINAI 785


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 37/180 (20%)

Query: 99  GFPR--KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           G PR  +  +D ++   C    +DEA  +VDIM  GGF     +++  LS L R  R+ E
Sbjct: 275 GLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGE 334

Query: 157 AWGLMEVMKE--------------------------------IR---VSPDLTAYNYLLT 181
           A  L+  M                                  IR   +SPD+  Y  LL 
Sbjct: 335 AQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLH 394

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
           AYC KGN+ A + +L +M ++    ++ TY+ L+    RAGR  EA  LL RM + G S+
Sbjct: 395 AYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSL 454



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 33/290 (11%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           +F +SG     P    Y  L++A   + ++     +L++ A+  C   + T+N +  +  
Sbjct: 375 NFIRSGVM--SPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLW 432

Query: 82  SLSVLSDLCRTLARL-DKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--- 136
                ++  R L R+ +KG+   +A  + +I  LC+  ++D A+ +VD M E G G    
Sbjct: 433 RAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGR 492

Query: 137 --------------------SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
                                 IT+  ++S L +  R +EA   +  M    +SPD   Y
Sbjct: 493 LGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIY 552

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           +  +  YC  G  +    VL+ ME++      RTY+ L+ G     + EE   L+  M +
Sbjct: 553 DTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKE 612

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
            G S    TY  ++ +  + G   +A+  +      D  L  EL  ++ S
Sbjct: 613 KGISPNVMTYNSLIKSFCQQGMVNKAMPLL------DEMLQNELVPNITS 656



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 60/120 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    YDT I   CK  K   A++V+  M + G   S  T++ ++       + EE   L
Sbjct: 547 PDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKL 606

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  MKE  +SP++  YN L+ ++C +G +     +L +M + +L  +  ++D L+   C+
Sbjct: 607 MSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELVPNITSFDLLIKAYCK 666



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 22/205 (10%)

Query: 109 LIGRLCKLKKIDEALRVVDIMA---EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           L+  LC   +++ A RV D M    E  FG+ A  +        R  R  +A  +++ M 
Sbjct: 151 LLQALCDAGRMELAQRVFDAMPARNEFSFGILARGY-------CRAGRSIDALKVLDGMP 203

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            +    +L   N ++  +C +G +     ++++M  + L  +  T++A +   C+AGRV 
Sbjct: 204 SM----NLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVL 259

Query: 226 EAFVLLRRMVDDGQSVL----YSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTE 279
           +A+ + + M +D Q  L      T+  ++      G+  +A   V  M CGG   ++++ 
Sbjct: 260 DAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVES- 318

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            +    S L+   R  EA  +L+EM
Sbjct: 319 -YNRWLSGLVRNGRVGEAQELLREM 342


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 15/208 (7%)

Query: 79  TENSLSVL-SDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRV 125
           T  SL+VL   LCR    +D G             P    Y TLI  LC+  +IDEA ++
Sbjct: 155 TVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKL 214

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
              M E     + +T+  +++ L   K ++EA   +E MK   + P++  Y+ L+   C 
Sbjct: 215 FTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCK 274

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G       + + M       +  TY  L+ G C+  +++EA  LL RM   G       
Sbjct: 275 DGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGL 334

Query: 246 YAHVMGALLRLGYYAQAVKFV--MVCGG 271
           Y  V+     +  + +A  F+  M+ GG
Sbjct: 335 YGKVISGFCAISKFREAANFLDEMILGG 362



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 1/205 (0%)

Query: 101 PRKSAYDTLIGRLCKLK-KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P  ++ + LI  LC+    +D  L++   M + G    + T+  ++S L R  R++EA  
Sbjct: 154 PTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKK 213

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M E   +P +  Y  L+   C   N+      L++M+ + +  +  TY +L+ G C
Sbjct: 214 LFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLC 273

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + GR  +A  L   M+  G      TY  ++  L +     +AV+ +     + +K D  
Sbjct: 274 KDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAG 333

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
           L+G + S    + +F EA   L EM
Sbjct: 334 LYGKVISGFCAISKFREAANFLDEM 358



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 127/325 (39%), Gaps = 29/325 (8%)

Query: 9   TKFLIPQSVL----VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD 64
           +K + P  V+      +   KS A  D  T+ Y      A G+  D  +  Y++ +    
Sbjct: 11  SKNITPSQVIKLMRAEKDVEKSMAVFDSATAEY------ANGYVHDQSSFGYMVLRLVSA 64

Query: 65  CCFNTANTFNFITNTEN---SLSVLSDLCRTLARLDKGF---------------PRKSAY 106
             F  A         EN   S  +L  +CR   R+ + F               P + AY
Sbjct: 65  NKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAY 124

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK-RMEEAWGLMEVMK 165
            T++  L +  +++ A +    M E G   +  + + ++  L R    ++    +   M 
Sbjct: 125 VTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMP 184

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +    PD   Y  L++  C  G +     +  +M E+       TY +L+ G C +  V+
Sbjct: 185 KRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVD 244

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA   L  M   G      TY+ +M  L + G   QA++   +   R  + +   + +L 
Sbjct: 245 EAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
           + L   ++  EA  +L  MN + LK
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLK 329



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 16/234 (6%)

Query: 33  PTSAYYDDLVNA-AGHERDLETVRYLLNKRARDC---CFNTANTFNFITNTENSLSVLSD 88
           PT   Y  L+N   G +   E +RYL   +++      F  ++  + +     SL  +  
Sbjct: 225 PTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMEL 284

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
               +AR  +  P    Y TLI  LCK +KI EA+ ++D M   G    A  +  ++S  
Sbjct: 285 FEMMMARGCR--PNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGF 342

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNY-------LLTAYCFKGNLTATSGVLK-KME 200
               +  EA   ++ M    ++P+   +N        ++   C   N  + +  L   M 
Sbjct: 343 CAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLC--ANYPSRAFTLYLSMR 400

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
              +  +  T ++LV   C+ G  ++A  L+  +V DG      T+  ++G  L
Sbjct: 401 SRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTL 454


>gi|8777358|dbj|BAA96948.1| salt-inducible protein-like [Arabidopsis thaliana]
          Length = 1012

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 138/316 (43%), Gaps = 32/316 (10%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPT--SAYYDDLVNAAGHERDLETVRYLLN 59
           S+ R  P+K L+    ++       GAFP   T  S  Y   V     +  +E +  + N
Sbjct: 149 SITRDDPSKGLL----ILRDCLRNHGAFPSSLTFCSLIYR-FVEKGEMDNAIEVLEMMTN 203

Query: 60  KRARDCCFNTANTF-NFITNTENSLSVLSDLCRT----------LARLDKGF--PRKSAY 106
           K       N    F NF+ +     +V+S  C+            + +D G   P    Y
Sbjct: 204 K-------NVNYPFDNFVCS-----AVISGFCKIGKPELALGFFESAVDSGVLVPNLVTY 251

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
            TL+  LC+L K+DE   +V  + + GF    + +   +    +G  + +A      M E
Sbjct: 252 TTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDREMVE 311

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             ++ D+ +Y+ L+     +GN+    G+L KM +E +  +  TY A++ G C+ G++EE
Sbjct: 312 KGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEE 371

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           AFVL  R++  G  V    Y  ++  + R G   +A   +     R I+     + ++ +
Sbjct: 372 AFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVIN 431

Query: 287 KLIGLERFNEANFILK 302
            L    R +EA+ + K
Sbjct: 432 GLCMAGRVSEADEVSK 447



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 6/216 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTF--NFITNTENSLSVLSDLC 90
           P    Y  LV+A      ++ VR L+ +R  D  F     F  N+I       +++  L 
Sbjct: 246 PNLVTYTTLVSALCQLGKVDEVRDLV-RRLEDEGFEFDCVFYSNWIHGYFKGGALVDALM 304

Query: 91  RTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           +    ++KG  R   +Y  LI  L K   ++EAL ++  M + G   + IT+  I+  L 
Sbjct: 305 QDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLC 364

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  ++EEA+ L   +  + +  D   Y  L+   C KGNL     +L  ME+  +     
Sbjct: 365 KMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSIL 424

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
           TY+ ++ G C AGRV EA  + + +V  G  + YST
Sbjct: 425 TYNTVINGLCMAGRVSEADEVSKGVV--GDVITYST 458



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKK 118
           ++R    NT  T+N + N       L +  R    L+     P +  Y  LI  LCK   
Sbjct: 723 KSRGVTLNTI-TYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGL 781

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
             +A +++D M   G   + I ++ I+    +  + E+A  ++      RV+PD    + 
Sbjct: 782 FLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSS 841

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           ++  YC KG++     V  + +++ + AD   +  L+ G C  GR+EEA  LLR M+
Sbjct: 842 MIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREML 898



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 6/177 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LC   ++ EA    D +++G  G   IT+  +L    + + ++    +
Sbjct: 421 PSILTYNTVINGLCMAGRVSEA----DEVSKGVVG-DVITYSTLLDSYIKVQNIDAVLEI 475

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                E ++  DL   N LL A+   G       + + M E  L  D  TY  ++ G C+
Sbjct: 476 RRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCK 535

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            G++EEA  +   +     S     Y  ++ AL + G    A + ++    + + LD
Sbjct: 536 TGQIEEALEMFNELRKSSVSAAV-CYNRIIDALCKKGMLDTATEVLIELWEKGLYLD 591



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y++LI  LC+   + EALR+ D +   G   S +T+  ++  L +     +A  L++ M
Sbjct: 733 TYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSM 792

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               + P++  YN ++  YC  G       V+ +    ++  DA T  +++ G C+ G +
Sbjct: 793 VSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDM 852

Query: 225 EEAFVLLRRMVDDGQS 240
           EEA  +     D   S
Sbjct: 853 EEALSVFTEFKDKNIS 868



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LCK   + +AL +       G  L+ IT++ +++ L +   + EA  L + ++
Sbjct: 699 YTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLE 758

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
            I + P    Y  L+   C +G       +L  M  + L  +   Y+++V G C+ G+ E
Sbjct: 759 NIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTE 818

Query: 226 EAF-VLLRRMV 235
           +A  V+ R+M+
Sbjct: 819 DAMRVVSRKMM 829



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 6/244 (2%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
           + G + D  TS      ++A G ++ +  + Y L +   D C    N    +     S  
Sbjct: 585 EKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLGMLNDAILLLCKRGSFE 644

Query: 85  VLSDLCRTLAR--LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
              ++   + R  L   FP  +   TL+     L+ +D  L VV+        +  I + 
Sbjct: 645 AAIEVYMIMRRKGLTVTFP-STILKTLVD---NLRSLDAYLLVVNAGETTLSSMDVIDYT 700

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            I++ L +   + +A  L    K   V+ +   YN L+   C +G L     +   +E  
Sbjct: 701 IIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLENI 760

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            L     TY  L+   C+ G   +A  LL  MV  G       Y  ++    +LG    A
Sbjct: 761 GLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDA 820

Query: 263 VKFV 266
           ++ V
Sbjct: 821 MRVV 824


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI   CK  K D+A  + D M   G   + + 
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVX 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L   G   
Sbjct: 310 XKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSV 369

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D   +  + ++        + + +LKEM +
Sbjct: 370 DAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N     +++   C+   R+
Sbjct: 205 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKN-GRV 263

Query: 97  DKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+  +
Sbjct: 264 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTL 323

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +     D   Y  L++  C +G       +L++M    L
Sbjct: 324 IDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGL 383

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             DARTY  ++   C+ G V +   LL+ M  DG      TY  +M  
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 52/127 (40%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E + E      L  +N L+
Sbjct: 90  DAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM 149

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +Y+ L+ G  R G ++E F L   M+  G  
Sbjct: 150 HRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ 209

Query: 241 VLYSTYA 247
               TY+
Sbjct: 210 PDVYTYS 216


>gi|224056581|ref|XP_002298921.1| predicted protein [Populus trichocarpa]
 gi|222846179|gb|EEE83726.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 129/300 (43%), Gaps = 8/300 (2%)

Query: 14  PQSVL-VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           P S++ V   ++K   +  +P  A Y  ++N     ++ + +  ++ K   D     +N 
Sbjct: 23  PNSIISVWNQYSKRKDY--KPNEALYTQVINKLAQAKNFDAIEDIMQKIKLDKSCRLSND 80

Query: 73  F--NFITNTENSLSVLSDLCRTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVD 127
           F  N I         +     TL  + KG+   P   +++ ++  L   K  D    V  
Sbjct: 81  FFHNVIKIYGQLAGRIKKAMETLFDMPKGYNCWPNVKSFNLVLNLLVSAKVFDVVHEVYL 140

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
                G  +   + + ++  L     +E A+ +++   + R  P++  ++ L+   C KG
Sbjct: 141 QAPMLGIEIDVCSLNILIKGLCENGDLEAAFNVLDEFPKQRCEPNVRTFSTLMHGLCKKG 200

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            +    G+L++ME+E + AD  T++ L+ G  + G+V E   LL RM   G      +Y 
Sbjct: 201 KVDEAFGLLERMEKEGIDADTITFNILISGLRKQGKVVEGLELLERMNIKGCEPNAGSYQ 260

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++  LL    Y +  +F++   G+ +      +  L   L       + +++LK+M ++
Sbjct: 261 EILYGLLDAEKYVEGKEFMVRMIGQGVDPSFVSYKKLVHGLCKERLLRDLDWVLKQMARQ 320


>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
 gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
          Length = 682

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKGF P    ++TLI    KL  +  A  V+ ++ E GF    ITF  ++  L    +++
Sbjct: 447 DKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLD 506

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A+   E M E  V P+   YN L+   C  G++     +L KM+ + +  DA +++AL+
Sbjct: 507 DAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALI 566

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           L  CR  +V++A  +   MV  G      TY  ++ AL
Sbjct: 567 LSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKAL 604



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 9/199 (4%)

Query: 67  FNT-ANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALR 124
           FNT  + ++ + N  N+  VL  L      ++ GF P    + +LI  LC   ++D+A  
Sbjct: 457 FNTLISGYSKLGNVHNAKVVLKML------MEHGFMPDIITFTSLIDGLCNTHQLDDAFV 510

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
             + MAE G   +A T++ ++  L     + +A  L+  MK   V+PD  ++N L+ ++C
Sbjct: 511 CFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFC 570

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA-FVLLRRMVDDGQSVLY 243
               +     +   M    +  D+ TY++L+   C   RV +A  +L  R      +   
Sbjct: 571 RMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNN 630

Query: 244 STYAHVMGALLRLGYYAQA 262
            +Y  ++ AL ++G +++A
Sbjct: 631 QSYWPIVAALAKMGQFSEA 649



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 2/221 (0%)

Query: 86  LSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           +SDLC  L    K  G P    Y  +I  L   K   +A   +  M   G   S ++++ 
Sbjct: 365 VSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNM 424

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   +++A  +++ M++    P+L  +N L++ Y   GN+     VLK + E  
Sbjct: 425 VIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHG 484

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
              D  T+ +L+ G C   ++++AFV    M + G      TY  +M  L   G+  +A+
Sbjct: 485 FMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAI 544

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +       +  D   F +L      + + ++A  I  +M
Sbjct: 545 DLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDM 585



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%)

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           PD   YN L+   C +G +     ++++ME E +  +  TY  LV G C AGRVEEAF +
Sbjct: 207 PDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRM 266

Query: 231 LRRMVDDGQSVLYSTYAHVMGALLR 255
           L +M + G +   +TY  ++  + R
Sbjct: 267 LDKMKEKGVAPSEATYRTLVHGVFR 291



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++L+  +C+   +DEA+R+V  M   G   +  T+  ++       R+EEA+ +
Sbjct: 207 PDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRM 266

Query: 161 MEVMKEIRVSPDLTAYNYLL 180
           ++ MKE  V+P    Y  L+
Sbjct: 267 LDKMKEKGVAPSEATYRTLV 286



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 67/154 (43%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G      T++ ++  + R   ++EA  L+  M+   + P++  Y  L+  +C  G 
Sbjct: 200 MPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGR 259

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +     +L KM+E+ +     TY  LV G  R    ++A+ +L   +    S+  S    
Sbjct: 260 VEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHT 319

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           ++  L +     +AV+F      R   LD+  FG
Sbjct: 320 MLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFG 353


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 100/211 (47%), Gaps = 2/211 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +GF P    Y TLI  LCK+     A+R++  M +     +   ++ I+  L + +++
Sbjct: 125 IGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQV 184

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+ L   M    +SPD+  YN L+ A C        + +L +M + K+  D  +++ +
Sbjct: 185 TEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 244

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           V   C+ G+V EA  ++ +M+  G  +    +Y  ++    ++    +A+        ++
Sbjct: 245 VDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQE 304

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +  DT  + +L   L  +ER  +A  +  EM
Sbjct: 305 LIPDTVTYSTLIHGLCHVERLQDAIALFHEM 335



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 6/242 (2%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSL 83
           G  PD  T   Y+ L++A  +  + + V  LLN+           +FN + +    E  +
Sbjct: 198 GISPDIFT---YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKV 254

Query: 84  SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           +   D+   + +     P   +Y+TLI   CK+++ID+A+ +   M         +T+  
Sbjct: 255 TEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYST 314

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++  L   +R+++A  L   M      P+L  Y  LL   C    L     +LK +E   
Sbjct: 315 LIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSN 374

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           L  D +  +  + G CRAG +E A  L   +   G      TY+ ++  L R G   +A 
Sbjct: 375 LDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEAS 434

Query: 264 KF 265
           K 
Sbjct: 435 KL 436



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 107/242 (44%), Gaps = 13/242 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKR-ARDCCFNTANTFNFITN-------TENSLS 84
           P    ++ +V+A   E  +     +++K   R  C     ++N + N        + ++ 
Sbjct: 236 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMY 295

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           +  ++CR      +  P    Y TLI  LC ++++ +A+ +   M       + +T+  +
Sbjct: 296 LFGEMCR-----QELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRIL 350

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           L  L + + + EA  L++ ++   + PD+   N  +   C  G L A   +   +  + L
Sbjct: 351 LDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGL 410

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             D  TY  ++ G CR G ++EA  L R M ++G ++    Y  +    LR    ++A++
Sbjct: 411 QPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQ 470

Query: 265 FV 266
            +
Sbjct: 471 LL 472



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 5/213 (2%)

Query: 101 PRKSAYDTLIGRLCKLK--KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           P       LI   C L   KI EAL + D M   GF    +T+  +++ L +      A 
Sbjct: 94  PNIYTLHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAI 153

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  M +    P++ AYN ++ + C    +T    +  +M  + +  D  TY++L+   
Sbjct: 154 RLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHAL 213

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKL 276
           C     +    LL  MVD        ++  V+ AL + G   +A   V  M+  G  +  
Sbjct: 214 CNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMP- 272

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +   + +L +    ++R ++A ++  EM +++L
Sbjct: 273 NVISYNTLINGYCKIQRIDKAMYLFGEMCRQEL 305


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 102/206 (49%), Gaps = 4/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++L+   C +K++++A  + + MA+GG      ++  +++   + K+ +EA  L
Sbjct: 328 PNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNL 387

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + PD+  Y+ L+      G ++    ++ +M +  +    RTY++++   C+
Sbjct: 388 FKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCK 447

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
             +V++A  LL ++ D G      TY+ ++  L + G    A K    ++  G ++ +DT
Sbjct: 448 IHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDT 507

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
                 G  + GL  FNEA  +L +M
Sbjct: 508 YTIMIQGFCVEGL--FNEALALLSKM 531



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+   CK  K+ E   V D+M + G   + +T++ ++      K + +A  +
Sbjct: 293 PDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSI 352

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V+PD+ +Y+ ++  +C          + K+M  + +  D  TY +L+ G  +
Sbjct: 353 FNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSK 412

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           +GR+  A  L+ +M D G      TY  ++ AL ++    +A+
Sbjct: 413 SGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAI 455



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 2/217 (0%)

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L R+D     P    Y+T+I  +CK+K ++EA  +   M   G     +T+  ++S    
Sbjct: 213 LQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCI 272

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++ +A  L   M    + PD+  +N L+ A+C  G +     V   M ++ +  +  T
Sbjct: 273 LGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVT 332

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y++L+ G C    V +A  +   M   G +    +Y+ ++    ++  + +A+       
Sbjct: 333 YNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMH 392

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            ++I  D   + SL   L    R + A  ++ +M+ R
Sbjct: 393 RKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR 429



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 130/317 (41%), Gaps = 43/317 (13%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           P +  ++ ++ +    +   TV YL  K   R    N  N  N + N    L ++     
Sbjct: 83  PPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNC-NILINCFCQLGLIPFAFS 141

Query: 92  TLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
             A++ K G+ P    + TLI  LC   +I +A    D +   GF    I++  ++  L 
Sbjct: 142 VFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLC 201

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +      A  L++ +    V P++  YN ++ + C    +     +  +M  + +  D  
Sbjct: 202 KVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVV 261

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMV------------------------DDGQSVL--- 242
           TY AL+ G C  G++ +A  L  +M+                         +G++V    
Sbjct: 262 TYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321

Query: 243 --------YSTYAHVMGA--LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
                   + TY  +M    L++    A+++   M  GG  +  D + +  + +    ++
Sbjct: 322 MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG--VNPDIQSYSIMINGFCKIK 379

Query: 293 RFNEANFILKEMNKRDL 309
           +F+EA  + KEM+++++
Sbjct: 380 KFDEAMNLFKEMHRKNI 396



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 82/186 (44%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+A+ + + +        A  F+ IL  L + K       L + M+   + P+L   N 
Sbjct: 66  VDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+  +C  G +     V  K+ +     D  T+  L+ G C  G++++AF+   ++V  G
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALG 185

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
                 +Y  ++  L ++G    A+  +    G  ++ +  ++ ++   +  ++  NEA 
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAF 245

Query: 299 FILKEM 304
            +  EM
Sbjct: 246 DLFSEM 251



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 85/213 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + LI   C+L  I  A  V   + + G+    ITF  ++  L    ++++A+  
Sbjct: 118 PNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLF 177

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + +  +    D  +Y  L+   C  G   A   +L++++   +  +   Y+ ++   C+
Sbjct: 178 HDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCK 237

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              V EAF L   M+  G S    TY+ ++     LG    A+         +IK D   
Sbjct: 238 VKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYT 297

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           F  L +      +  E   +   M K+ +K  F
Sbjct: 298 FNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNF 330


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 98/197 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I  LCK  ++DEA R  + M +     S IT+   ++ L + ++++EA  +
Sbjct: 289 PNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCV 348

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E+   P+   YN L+  YC  GN++    +   M  + +  ++ T ++L+ G C+
Sbjct: 349 LKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCK 408

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           + ++ +A  +L  M+  G  +   +++ V+  L     +  A+ F+     R+++ +  L
Sbjct: 409 SDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGL 468

Query: 281 FGSLGSKLIGLERFNEA 297
             +L S L    +  EA
Sbjct: 469 LTTLVSGLCKAGKQGEA 485



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 90  CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           CR L    KGF P     + LI  LCK   + E L+++  M E G     IT++ ++S  
Sbjct: 490 CRLLG---KGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGC 546

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +  +++E + L E M +  + PD+  +N LL   C    +   S +  + ++     + 
Sbjct: 547 CKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNV 606

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY  ++ G C+A +VEE   LL  +V     +    Y  ++ A    G    A +    
Sbjct: 607 YTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDD 666

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              R + L    + SL   L  +   ++A  +L EM K  L
Sbjct: 667 MKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGL 707



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 94/211 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    + T+I   CK  + D+A+ +   M + G   + +T++ I+  L +  R++EA+ 
Sbjct: 253 IPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYR 312

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             E M + +VSP L  Y+  +        +   + VLK+M E     +   Y+ L+ G C
Sbjct: 313 FKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYC 372

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G + EA  +   M+  G S    T   ++    +     QA   +    GR + ++  
Sbjct: 373 KMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQG 432

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            F  + + L    RF  A   ++EM  R+L+
Sbjct: 433 SFSMVINWLCLKFRFVTALHFIREMLLRNLR 463



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 6/215 (2%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP       L+  L K  ++ ++  V D +  GG       F  +++   +G R ++A G
Sbjct: 218 FPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIG 277

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M+++ V+P++  YN ++   C  G L       +KM +EK+     TY   + G  
Sbjct: 278 LFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLI 337

Query: 220 RAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           +  +++EA  +L+ M + G     V+Y+T   ++    ++G  ++A+K       + I  
Sbjct: 338 KLEKIDEANCVLKEMSELGFVPNEVVYNT---LIDGYCKMGNISEALKIRDDMLSKGISP 394

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           ++    SL       ++  +A  +L+EM  R L +
Sbjct: 395 NSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPI 429



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 11/246 (4%)

Query: 75  FITNTENSLSVLSDLCR------TLARLDKGFPR-----KSAYDTLIGRLCKLKKIDEAL 123
           F+ N   S +++  LC+      TL  L     R     +  Y+TLI   CK  K+ E  
Sbjct: 497 FVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGF 556

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            + + M + G      TF+ +L  L    +++EA  L    K+    P++  Y  ++  Y
Sbjct: 557 ELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGY 616

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C    +     +L ++  +KL  ++  Y++L+   C  G +  AF L   M   G  +  
Sbjct: 617 CKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSC 676

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
           +TY+ +M  L  +G    A   +       +  +   + ++      L + N+ N +L+E
Sbjct: 677 ATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQE 736

Query: 304 MNKRDL 309
           M+  ++
Sbjct: 737 MSSHNI 742



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  LC   KIDEA R+     + G+  +  T+  ++    +  ++EE   L
Sbjct: 569 PDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENL 628

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +   ++  +   YN L+ AYC  GN+ A   +   M+   +     TY +L+ G C 
Sbjct: 629 LNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCN 688

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G V++A  LL  M  +G       Y  ++G   +LG   +    +      +I  +   
Sbjct: 689 IGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFT 748

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  +      L +  EA  +L EM ++ +
Sbjct: 749 YTIMIDGFCKLGKTKEAAKLLNEMTEKGI 777



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 67/131 (51%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y +L+  LC +  +D+A  ++D M + G   + + +  I+   ++  +M +   +++ 
Sbjct: 677 ATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQE 736

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    + P+   Y  ++  +C  G     + +L +M E+ +  DA TY+A   G C+ G+
Sbjct: 737 MSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGK 796

Query: 224 VEEAFVLLRRM 234
           VEEAF +   M
Sbjct: 797 VEEAFKVCDEM 807



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y++LI   C    ++ A R+ D M   G  LS  T+  ++  L     +++A  L++ M
Sbjct: 643 VYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEM 702

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++  + P++  Y  ++  Y   G +   + VL++M    +  +  TY  ++ G C+ G+ 
Sbjct: 703 RKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKT 762

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +EA  LL  M + G      TY      L + G   +A K
Sbjct: 763 KEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFK 802



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 6/226 (2%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P +  Y+TLI   CK+  I EAL++ D M   G   +++T + ++    +  ++ +A
Sbjct: 356 GFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQA 415

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++E M    +  +  +++ ++   C K         +++M    L  +      LV G
Sbjct: 416 ENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSG 475

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+AG+  EA  L  R++  G      T   ++  L + G   + +K +     R +  D
Sbjct: 476 LCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFD 535

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
              + +L S      +  E   + +EM K+ ++      D Y  N+
Sbjct: 536 RITYNTLISGCCKEGKVKEGFELKEEMVKKGIQ-----PDIYTFNL 576



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 70/135 (51%)

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A  V  ++A+ G   S  T   +LS L +   +++++ + + +    + PD+  ++ ++ 
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
           A+C         G+  KME+  +  +  TY+ ++ G C++GR++EA+    +MV +  S 
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 242 LYSTYAHVMGALLRL 256
              TY+  +  L++L
Sbjct: 325 SLITYSVFINGLIKL 339



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 15/217 (6%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P      TL+  LCK  K  EA+ +   +   GF  + +T + ++  L +   M+E   L
Sbjct: 464 PNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKL 523

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  +  D   YN L++  C +G +     + ++M ++ +  D  T++ L+ G C 
Sbjct: 524 LRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCN 583

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A +++EA  L      +G    Y    +  G ++  GY          C    ++    L
Sbjct: 584 ADKIDEASRLWHECKKNG----YVPNVYTYGVMID-GY----------CKANKVEEGENL 628

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRD 317
              L SK + L      + I       ++   F+LRD
Sbjct: 629 LNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRD 665



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 49/119 (41%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y T+IG   KL ++++   V+  M+      +  T+  ++    +  + +EA  
Sbjct: 708 LPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAK 767

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
           L+  M E  + PD   YN      C +G +     V  +M    +  D  TY  L+ G 
Sbjct: 768 LLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDGC 826


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 4/218 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCK  K+ EA  V+ +M +       IT+  ++        +++A  +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M  + V+PD+  Y  L+  +C    +     + K+M ++ +     TY +L+ G C+
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+   + L+  M D GQ     TY+ ++  L + G+  +A+        + I+ +T  
Sbjct: 387 SGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFT 446

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDY 318
           F  L   L    R  +A  + +++    L  G+ L  Y
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDL----LTKGYHLNVY 480



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 29/250 (11%)

Query: 18   LVTRSFTKSGAF---PDEPTSAYYDDL-----VNAAGHERDLETVRYLLNKRARDC-CFN 68
            +  R  T  GA+   P  P   Y   +     +   G + DL T+  L+N     C C  
Sbjct: 920  MAERGVTSVGAYIRIPHNPMKHYSTAVSLSHRLELKGIQPDLFTLNILIN-----CFCHM 974

Query: 69   TANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVD 127
               TFNF        S+L+ +      L +G+ P    + TLI  LC   ++++AL   D
Sbjct: 975  GQITFNF--------SILAKI------LKRGYHPDTITFTTLINGLCLKGQVNKALHFHD 1020

Query: 128  IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
             +   GF L+ +++  +++ + +      A  L+  +      PD+  YN ++ A C   
Sbjct: 1021 KLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQ 1080

Query: 188  NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
             ++   G+  +M  + + AD  TY+ L+ G C  G+++EA  LL +MV    +    TY 
Sbjct: 1081 LVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYN 1140

Query: 248  HVMGALLRLG 257
             ++ AL + G
Sbjct: 1141 ILVDALCKEG 1150



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LCK  +I     ++D M + G   + IT+  ++  L +   ++ A  L
Sbjct: 372 PGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIAL 431

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK+  + P+   +  LL   C  G L     V + +  +    +  TY+ ++ G C+
Sbjct: 432 FNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCK 491

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G +EEA  +L +M D+G
Sbjct: 492 QGLLEEALTMLSKMEDNG 509



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 76/163 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   CK K +DEAL +   M +       +T+  ++  L +  R+   W L
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDL 396

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +     ++  Y+ L+   C  G+L     +  KM+++ +  +  T+  L+ G C+
Sbjct: 397 IDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCK 456

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR+++A  + + ++  G  +   TY  ++    + G   +A+
Sbjct: 457 GGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEAL 499



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 19/240 (7%)

Query: 46  GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSA 105
           G + DL T+  L+N      CF       F        SVL+ +      L +G+P  + 
Sbjct: 89  GIQPDLITLNILIN------CFCHMGQITF------GFSVLAKI------LKRGYPPDTV 130

Query: 106 -YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
             +TLI  LC   ++ +AL   D +   GF L+ +++  +++ + +      A  L++ +
Sbjct: 131 TLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKI 190

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P++  Y+ ++ A C    ++   G+  +M  + + AD  TY  L+ G C  G++
Sbjct: 191 DGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKL 250

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA  LL  MV    +    TY  ++ AL + G   +A   + V     +K D   + +L
Sbjct: 251 KEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL 310



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 89/205 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           F + S++     +   ++ +D+A+   + M         I F+ IL    + K    A  
Sbjct: 21  FLQNSSHSHFHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVS 80

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   ++   + PDL   N L+  +C  G +T    VL K+ +     D  T + L+ G C
Sbjct: 81  LSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLC 140

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             G+V++A     +++  G  +   +Y  ++  + ++G    A+K +    GR  K +  
Sbjct: 141 LKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVV 200

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
           ++ ++   L   +  +EA  +  EM
Sbjct: 201 MYSTIIDALCKYQLVSEAYGLFSEM 225



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 68/153 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TLI   C   K+ EA+ +++ M       +  T++ ++  L +  +++EA  ++ VM
Sbjct: 236 TYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVM 295

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V PD+  Y+ L+  Y     +     V   M    +  D  TY  L+ G C+   V
Sbjct: 296 LKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMV 355

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +EA  L + M          TY+ ++  L + G
Sbjct: 356 DEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSG 388



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 2/124 (1%)

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
            RL K  P    Y T+I  LCK + + EA  +   M   G     +T+  ++       +
Sbjct: 192 GRLTK--PNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGK 249

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           ++EA GL+  M    ++P++  YN L+ A C +G +     VL  M +  +  D  TY  
Sbjct: 250 LKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYST 309

Query: 214 LVLG 217
           L+ G
Sbjct: 310 LMDG 313



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 97  DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G P     Y +LI  LCK   +D A+ + + M + G   +  TF  +L  L +G R++
Sbjct: 402 DRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLK 461

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  + + +       ++  YN ++  +C +G L     +L KME+     DA T++ ++
Sbjct: 462 DAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIII 521

Query: 216 L 216
           +
Sbjct: 522 I 522


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 88/197 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + ++I  LCK  ++ E   ++D+M + G   + +TF+ ++        MEEA+ L
Sbjct: 364 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 423

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M  I + P+   Y  L+  YC  G +     V + M  + +   +  Y  ++ G  +
Sbjct: 424 LDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQ 483

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A R   A  +   M++ G +V   TY  V+G L R     +A   +      ++K D   
Sbjct: 484 ARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIIT 543

Query: 281 FGSLGSKLIGLERFNEA 297
           F  + S +  + R  EA
Sbjct: 544 FNIVISAMFKVGRRQEA 560



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 104/238 (43%), Gaps = 4/238 (1%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           + T T++ L+ + ++   +  L KG  P K  ++ LI    +   +D+A+ + + M   G
Sbjct: 233 YATATDSCLADVHNIFNLM--LTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKG 290

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
                +TF  ++S L R  R+++A      M +I V P    Y  L+   C  G L    
Sbjct: 291 MIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAK 350

Query: 194 GVLKKMEEEKLGADARTY-DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            ++ +M  + +      Y  +++   C+ GRV E   ++  MV  GQ     T+  +M  
Sbjct: 351 ELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEG 410

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              +G   +A   +       I+ +  ++G+L        R ++A  + ++M  + +K
Sbjct: 411 YCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVK 468



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 90  CRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           C  L  +++G  P+    +++I  LCK+K++D+A  +V  M + G      T+  I+  L
Sbjct: 69  CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 128

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            + K M++A  ++E M E    P+   YN L+  Y   G    +  V K+M    +    
Sbjct: 129 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTV 188

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAH 248
              ++ +    + GR  EA  +   MV  G     + YST  H
Sbjct: 189 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLH 231



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 4/151 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI    ++ + D  L +V  + + G G    ++  I   +  G+ +++A  L
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGE-VDKAHCL 70

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V P +   N ++   C    +     +++KM +  +  D  TY  ++ G C+
Sbjct: 71  FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 130

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           +  +++A  +L +MV+ G    S+ Y++  H
Sbjct: 131 SKAMDKAERVLEQMVEAGTRPNSITYNSLIH 161



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 12/237 (5%)

Query: 33  PTSAYYDDLVNAAGHE------RDLETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSV 85
           P   Y+  ++N    E      +D+  +     +R     FN+    +  + N E + ++
Sbjct: 364 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 423

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L  +           P    Y TL+   CK  +ID+AL V   M   G   +++ +  IL
Sbjct: 424 LDAMASIGIE-----PNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIIL 478

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L + +R   A  +   M E   +  +  Y  +L   C        + +L+K+    + 
Sbjct: 479 HGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK 538

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            D  T++ ++    + GR +EA  L   +   G      TY+ ++  L++   Y +A
Sbjct: 539 FDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEA 595



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 50/223 (22%)

Query: 84  SVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           S++ +LC+ +  +DK              P    Y  +I  LCK K +D+A RV++ M E
Sbjct: 88  SIIKELCK-MKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 146

Query: 132 GGFGLSAITFHPI-----------------------------------LSVLTRGKRMEE 156
            G   ++IT++ +                                   +  L +  R  E
Sbjct: 147 AGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNE 206

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN--LTATSGVLKKMEEEKLGADARTYDAL 214
           A  + + M      PD+ +Y+ +L  Y    +  L     +   M  + +  +   ++ L
Sbjct: 207 AKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNIL 266

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +    R G +++A ++   M + G      T+A V+ +L R+G
Sbjct: 267 INAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIG 309



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 7/208 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           +++L+V  D+      L KG  P    Y  ++  L + ++   A ++   M E G  +S 
Sbjct: 453 DDALTVFRDM------LHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSI 506

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T+  +L  L R    +EA  L+E +  + V  D+  +N +++A    G       +   
Sbjct: 507 HTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDA 566

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           +    L  + +TY  ++    +    EEA  L   +   G +       H++  LL    
Sbjct: 567 ISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAE 626

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGS 286
            A+A  ++ + G  ++ L+      L S
Sbjct: 627 VAKASNYLSIIGENNLTLEASTISLLAS 654



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 72/161 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  ++G LC+    DEA  +++ +         ITF+ ++S + +  R +EA  L + + 
Sbjct: 509 YGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAIS 568

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y+ ++T    + +      +   +E+    +D+R  + +V        V 
Sbjct: 569 TYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVA 628

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A   L  + ++  ++  ST + +     R G Y + +K +
Sbjct: 629 KASNYLSIIGENNLTLEASTISLLASLFSREGKYREHIKLL 669


>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g19290-like [Cucumis
           sativus]
          Length = 885

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 81  NSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           ++  V SD+ R      KGF P    Y++LIG  CK+ K++EAL++V  M + G      
Sbjct: 590 DAYDVFSDMLR------KGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIF 643

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T + I+  L +  RM+ A      M  + +SPD+  YN L+  YC   ++     ++ KM
Sbjct: 644 TVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKM 703

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
            +     D  TY+  + G C   ++  A ++L  ++  G    +V Y+T
Sbjct: 704 SDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNT 752



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 85/206 (41%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S  DTL+    K +   EAL ++  M E G   +      +  +L R       W L   
Sbjct: 188 SVLDTLMQAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGD 247

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +      P+   +N L+  +C KG       +L  M + +   D  +Y+ ++   C  G+
Sbjct: 248 VVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQ 307

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
              A  LL  M+++G     +T+  ++ A  + G    A K+        +  +T ++  
Sbjct: 308 SSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNI 367

Query: 284 LGSKLIGLERFNEANFILKEMNKRDL 309
           + S  +     ++AN + +EM  +D+
Sbjct: 368 MISGYVKARDISQANLLFEEMRTKDI 393



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 65/138 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + + T+I   CK   ++ A +  D + + G   + I ++ ++S   + + + +A  L
Sbjct: 325 PSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLL 384

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M+   + PD   +N L+  +   G     + +L+ +    L  D+   D  V G C 
Sbjct: 385 FEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCW 444

Query: 221 AGRVEEAFVLLRRMVDDG 238
           AGR +EA  LL  +++ G
Sbjct: 445 AGRYDEAMKLLENLLEKG 462



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 62/147 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP   A+   I  LC    + +A  V   M   GF  +   ++ ++    +  ++ EA  
Sbjct: 569 FPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALK 628

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M +  + PD+   N ++   C +G +         M    L  D  TY+ L+ G C
Sbjct: 629 LVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYC 688

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +A  V  A  L+ +M D G     +TY
Sbjct: 689 KAFDVGGADDLMMKMSDSGWEPDLTTY 715



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 96  LDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKGFP  + A+  L+    ++  ++ A  + + M   G    A+ F   ++ L     M
Sbjct: 529 IDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLM 588

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A+ +   M      P+   YN L+  +C  G L     ++++M +  L  D  T + +
Sbjct: 589 TDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMI 648

Query: 215 VLGACRAGRVE---EAFVLLRRMVDDGQSVLYST 245
           + G C+ GR++   E F+ + RM      V Y+T
Sbjct: 649 ICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNT 682



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S  D  +  LC   + DEA+++++ + E G   S + F+ I++        E A+    +
Sbjct: 433 SLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGI 492

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M +  ++P  +  + LL +   KG+L      L  M ++        +  L+ G  R G 
Sbjct: 493 MVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGA 552

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           V  A  L   M   G       +A  +  L   G    A         +    +  ++ S
Sbjct: 553 VNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNS 612

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
           L      + + NEA  +++EMNKR L     L D + +N+
Sbjct: 613 LIGGFCKVGKLNEALKLVREMNKRGL-----LPDIFTVNM 647



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 54/140 (38%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  SA   L   L +        ++   +   G   +  TF+ ++    R         L
Sbjct: 220 PNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEAL 279

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           + VM + R  PD+ +YN ++ A C KG  +    +L  M E        T+  ++   C+
Sbjct: 280 LHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCK 339

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
            G VE A      + D G S
Sbjct: 340 EGNVELARKYFDEIEDMGLS 359


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 34/243 (13%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y+ +I  LCKL K+DE++ + + M +        TF  ++  L++      A  
Sbjct: 252 YPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEK 311

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAY--------CFK----------GNLTA----TSGVL- 196
           + + M E  +SPD+  YN +L+          CF+           N+ +      G+L 
Sbjct: 312 VFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLD 371

Query: 197 -KKME----------EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            KK+E          E  L AD+ TY  L+ G C+ G + +A  +L    ++G  +    
Sbjct: 372 NKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFA 431

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
           Y+ ++  L + G   QAV+ +        KL++ +F SL +  +   +  EA  +L+EM 
Sbjct: 432 YSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMK 491

Query: 306 KRD 308
            +D
Sbjct: 492 SKD 494



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 4/289 (1%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V +   +SG  PD  T   Y+ +++       L     L N  +++ C N  +    I  
Sbjct: 312 VFQEMIESGLSPDVRT---YNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQG 368

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
             ++  V   +C      ++G    S  Y  LI  LCK   +++ALR+++     G  L 
Sbjct: 369 LLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLD 428

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
              +  ++  L +   +E+A  L+  MK+ R   +   +N L+  Y     L     VL+
Sbjct: 429 TFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLR 488

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M+ +       +Y+ ++ G C+A R  +A++ L+ M+++G      TY+ ++  L R  
Sbjct: 489 EMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGE 548

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
               A+     C  + +K D ++   +   L   ++ + A  I  +M +
Sbjct: 549 KVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQ 597



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 99/210 (47%), Gaps = 1/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++  L +  K+++   + ++M++     + ++++ ++  L   K++E+A   
Sbjct: 323 PDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNN-CCNIVSYNMLIQGLLDNKKVEQAICY 381

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +++ E  +  D T Y  L+   C  G L     +L++ E E    D   Y ++V G C+
Sbjct: 382 WQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCK 441

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +E+A  L+ +M  + + +    +  ++   +R     +A+  +     +D       
Sbjct: 442 KGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVS 501

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + ++ + L   ERF++A   LKEM +  LK
Sbjct: 502 YNTIINGLCKAERFSDAYLSLKEMLEEGLK 531



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 96/209 (45%), Gaps = 1/209 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CK ++ ++   ++  M E G     +++  +++ L +   + +A  L
Sbjct: 147 PNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVEL 206

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK-MEEEKLGADARTYDALVLGAC 219
            + M    V+PD+  YN L+  +  KG+    + + K+ + E  +     TY+ ++ G C
Sbjct: 207 FDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLC 266

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G+++E+  +  RM  + +S    T++ ++  L + G +  A K         +  D  
Sbjct: 267 KLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVR 326

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRD 308
            + ++ S L    + N+   +   M+K +
Sbjct: 327 TYNAMLSGLFRTGKLNKCFELWNVMSKNN 355



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T+I  LCK ++  +A   +  M E G     IT+  ++  L RG++++ A  L
Sbjct: 497 PTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNL 556

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
                  R+ PDL  +N ++   C    +     +  +M +     D  T++ ++ G  +
Sbjct: 557 WHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYK 616

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           AG   EA  +  R+++ G      +Y      L      + A++F+
Sbjct: 617 AGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFL 662



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 3/206 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   ++++++    +  +  EA          G   +  T++ ++ +  + ++ E+  GL
Sbjct: 112 PGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGL 171

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  ++PD+ +Y  L+ A    GNL     +  +M    +  D   Y+ L+ G  R
Sbjct: 172 LTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLR 231

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            G   +A  + +R++ +  SV  S  TY  ++  L +LG   ++++        +   D 
Sbjct: 232 KGDFVKANEIWKRLLTES-SVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDL 290

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
             F S+   L     FN A  + +EM
Sbjct: 291 FTFSSMIHGLSKAGNFNAAEKVFQEM 316


>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
          Length = 327

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ ++G +C+   +D A   +  ++  G+    I++  +L  L   ++ E+   L
Sbjct: 58  PDMFIFNAVVGGMCREGLVDRAFEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKL 117

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           M  M      P++  Y+ L+++ C  G +     +LK M+E+ L  DA +YD L+   C+
Sbjct: 118 MSDMLSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCK 177

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             RV+ A   L  M+ DG       Y  ++  L + G   +A+K 
Sbjct: 178 ESRVDLAIEFLESMISDGCLPDIVNYNTILSTLCKNGKADEALKI 222



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 103/208 (49%), Gaps = 1/208 (0%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           KG+ P   +Y  L+  L   +K ++  +++  M   G   + +T+  ++S L R  ++EE
Sbjct: 89  KGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGKVEE 148

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L++VMKE  ++PD  +Y+ L+ A+C +  +      L+ M  +    D   Y+ ++ 
Sbjct: 149 AVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTILS 208

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
             C+ G+ +EA  +  ++ + G     S+Y  +  AL   G+  +A+  ++    +DI  
Sbjct: 209 TLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRALGMILEMLSKDIDP 268

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEM 304
           D   + SL S L      ++A  +L +M
Sbjct: 269 DEITYNSLISCLCRDAMVDQAIELLVDM 296



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 60/137 (43%)

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           L  Y  L+ A   KG +     +L +M E  L  D   ++A+V G CR G V+ AF  +R
Sbjct: 25  LVTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIR 84

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            +   G +    +Y+ ++  LL    +    K +     +  + +   +  L S L    
Sbjct: 85  YISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDG 144

Query: 293 RFNEANFILKEMNKRDL 309
           +  EA  +LK M ++ L
Sbjct: 145 KVEEAVSLLKVMKEQGL 161


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 14/237 (5%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT-------ENSLSVLSDLC 90
           Y  L++A   E D+ET R L ++  R        T++ +            +  +L D+ 
Sbjct: 223 YSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMT 282

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
               R     P   AY  L   LCK  +  +A++V+D+M + G     +T++ +++ L +
Sbjct: 283 ARGVR-----PDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCK 337

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK--LGADA 208
             RM++A+G++E+M +    PD   YN LL   C  G +     + K +  EK  +  D 
Sbjct: 338 EDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDV 397

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            T + L+ G C+ GRV +A  +   MV+ G      TY  ++   L      +A+K 
Sbjct: 398 FTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKL 454



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ ++  LCK  ++D+A  VV++M + G    A+T++ +L  L    ++ EA  L
Sbjct: 323 PGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDL 382

Query: 161 MEVM--KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            +++  ++  V PD+   N L+   C +G +   + +   M E  L  +  TY+ L+ G 
Sbjct: 383 WKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGY 442

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             A ++ EA  L +  V+ G S    TY+ ++  L ++   + A
Sbjct: 443 LAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVA 486



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 1/171 (0%)

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEI-RVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
            +T++ +++   + KR+ EA  L E MK+     P+L  Y+ L+  YC  G +    G+L
Sbjct: 149 CVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLL 208

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
           ++ME E L AD   Y +L+   C  G +E    L   M+    S    TY+ +M  L R 
Sbjct: 209 EEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRT 268

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           G + +A + +     R ++ D   +  L   L    R  +A  +L  M ++
Sbjct: 269 GRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQK 319



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 93/241 (38%), Gaps = 3/241 (1%)

Query: 60  KRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF---PRKSAYDTLIGRLCKL 116
           KR  DC      T+N + N       L++       + KG    P    Y  LI   CK 
Sbjct: 139 KRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKS 198

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
            ++ E L +++ M   G       +  ++S       +E    L + M   +VSP++  Y
Sbjct: 199 GEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTY 258

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           + L+      G     S +LK M    +  D   Y  L  G C+ GR  +A  +L  MV 
Sbjct: 259 SCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQ 318

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
            G+     TY  V+  L +      A   V +   +  K D   + +L   L G  + +E
Sbjct: 319 KGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHE 378

Query: 297 A 297
           A
Sbjct: 379 A 379



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 99/213 (46%), Gaps = 1/213 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++ GF P    Y  +I  LCK++ +  A  +   M + G   + I ++ +++ L R   +
Sbjct: 459 VESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSL 518

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A  L + M+ +  + D+ ++N ++      G++ +   +L +M    L  DA T+  L
Sbjct: 519 EQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSIL 578

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +    + G ++EA  L  +MV  G       +  ++      G   + +  +     +D+
Sbjct: 579 INRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDV 638

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            LD++L  ++ + L  + R  +   IL + +++
Sbjct: 639 VLDSKLTSTILACLCHMSRNLDVEKILPKFSQQ 671



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 89/198 (44%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + LI  LCK  ++ +A R+   M E G   + +T++ ++      +++ EA  L +   E
Sbjct: 401 NNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVE 460

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
              SP+   Y+ ++   C    L+   G+  KM++  +      Y+AL+   CR   +E+
Sbjct: 461 SGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQ 520

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  L + M +   +V   ++  ++   L+ G    A + +      D+  D   F  L +
Sbjct: 521 ARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILIN 580

Query: 287 KLIGLERFNEANFILKEM 304
           +   L   +EA  + ++M
Sbjct: 581 RFSKLGMLDEAMGLYEKM 598



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 66/129 (51%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI      +K+ EAL++     E GF  +++T+  +++ L + + +  A GL   MK
Sbjct: 435 YNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMK 494

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  + P +  YN L+T+ C + +L     + ++M       D  +++ ++ G  +AG V+
Sbjct: 495 DSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVK 554

Query: 226 EAFVLLRRM 234
            A  LL  M
Sbjct: 555 SAKELLSEM 563



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 45/238 (18%), Positives = 91/238 (38%), Gaps = 4/238 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSLSVLSDL 89
           P S  Y  ++N     + L   R L  K        T   +N +  +   E+SL     L
Sbjct: 465 PNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSL 524

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            + +  ++      S ++ +I    K   +  A  ++  M        A+TF  +++  +
Sbjct: 525 FQEMRNVNHNVDVVS-FNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFS 583

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   ++EA GL E M      P +  ++ LL  Y  KG       +L +M ++ +  D++
Sbjct: 584 KLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSK 643

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
               ++   C   R  +   +L +     +     T       L+RL  +   +K ++
Sbjct: 644 LTSTILACLCHMSRNLDVEKILPKFSQQSEHTSKGTTIKCHELLMRLNNFHPELKLIV 701


>gi|219363531|ref|NP_001137052.1| uncharacterized protein LOC100217224 [Zea mays]
 gi|194698168|gb|ACF83168.1| unknown [Zea mays]
          Length = 338

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 6/190 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL-SVLTRGKRMEEAWG 159
           P +  Y+T++  LCK  ++ +A R+V+ M   G   + ITF+ ++ S +T G   E A  
Sbjct: 114 PNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGVTPNTITFNTLIHSYVTLGDN-EVAMK 172

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + E M +  +S DL  YN L+   C +G     S +++++   KL  +A T+ AL++G C
Sbjct: 173 MHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQLVQELCAAKLEPNASTFSALIIGQC 232

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV----KFVMVCGGRDIK 275
           +    E A  LL  M   G    Y TY+ ++    +   +  A+      +M C   D  
Sbjct: 233 KKQNPERALDLLNAMKKAGFQPNYYTYSILISTFSKNKDFEGAIDVLKDMLMRCIAPDKA 292

Query: 276 LDTELFGSLG 285
           L  E F  L 
Sbjct: 293 LLHEFFEGLS 302



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKK-IDEALRVVDI 128
           T N +   + +L  + D  + L  +   GF R +A ++TLI   C     ++  LR+ + 
Sbjct: 47  TVNMVMRAKCALGRVVDAAQLLDEMPCWGFSRTAASFNTLIAAYCHDSGGMETVLRLKER 106

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   + +T++ I+  L +  RM +A  ++  M+   V+P+   +N L+ +Y   G+
Sbjct: 107 MEREGLVPNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGVTPNTITFNTLIHSYVTLGD 166

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
                 + ++M +  L AD  TY+AL+LG C  G+  +A  L++ +
Sbjct: 167 NEVAMKMHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQLVQEL 212



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 1/161 (0%)

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R +R E A      M+  RVSP++   N ++ A C  G +   + +L +M        A 
Sbjct: 22  RLRRPEIAISFFREMRRCRVSPNVYTVNMVMRAKCALGRVVDAAQLLDEMPCWGFSRTAA 81

Query: 210 TYDALVLGACR-AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           +++ L+   C  +G +E    L  RM  +G      TY  ++  L + G   QA + V  
Sbjct: 82  SFNTLIAAYCHDSGGMETVLRLKERMEREGLVPNEVTYNTIVHGLCKEGRMHQARRIVNE 141

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              + +  +T  F +L    + L     A  + +EM K  L
Sbjct: 142 MRVKGVTPNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGL 182


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 134/350 (38%), Gaps = 82/350 (23%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLS 84
           +P S  Y  L++    +  L  VR LL+   RD        FN +          + +++
Sbjct: 337 KPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMT 396

Query: 85  VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF--- 141
             +++ +   R     P   +Y T+I  LCK  ++++A+   + M   G   + I+F   
Sbjct: 397 AFTEMRQNGLR-----PDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSL 451

Query: 142 -------------------------HP-------ILSVLTRGKRMEEAWGLMEVMKEIRV 169
                                    HP       I+  L +  R+ EA    +++  I V
Sbjct: 452 IHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGV 511

Query: 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
            PD+ +YN L+  YCF G +  +   L +M    L  D+ TY++L+ G  + GRVE+A  
Sbjct: 512 KPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALA 571

Query: 230 LLR-----------------------------------RMVDDGQSVLYSTYAHVMGALL 254
           L R                                   +MVD G  +   TY  V+G L 
Sbjct: 572 LYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLC 631

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                 +A++       ++ +LD   F  + + L+ + R +EA  +   M
Sbjct: 632 ENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAM 681



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRV-VDIMAEGGFGLS--AITFHPILSVLTRGKRMEEA 157
           P   +Y+ LI  LC  KK  EAL + + + A+GG+  S   ++++ ++    +   +++A
Sbjct: 160 PDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKA 219

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           + L   M    + PD+  YN L+   C    +     +L+ M ++ +  D RTY+ ++ G
Sbjct: 220 YFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRG 279

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            C  G++EEA  LL++M   G      TY+ ++    ++G  A+A
Sbjct: 280 YCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEA 324



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T+I    K  ++D+A  +   M   G     +T++ ++  L + + M++A  +
Sbjct: 198 PNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAI 257

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  V PD   YN ++  YC  G L     +LKKM    L  D  TY  L+   C+
Sbjct: 258 LQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCK 317

Query: 221 AGRVEEAFVLLRRMVDDGQ---SVLYSTYAH 248
            GR  EA  +   MV  GQ   S +Y    H
Sbjct: 318 IGRCAEARSVFDSMVRKGQKPNSTIYHILLH 348



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 111/276 (40%), Gaps = 7/276 (2%)

Query: 26  SGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
            G  PD  T ++  D L  A   ++ +  ++++ +K           T+N +     SL 
Sbjct: 229 QGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGV----MPDTRTYNIMIRGYCSLG 284

Query: 85  VLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
            L +  R L ++   G  P    Y  LI   CK+ +  EA  V D M   G   ++  +H
Sbjct: 285 QLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYH 344

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +L        + +   L+++M    +  +  A+N L+ AY   G +        +M + 
Sbjct: 345 ILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQN 404

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            L  D  +Y  ++   C+ GRVE+A     +MV +G S    ++  ++  L  +G + + 
Sbjct: 405 GLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKV 464

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
            +       R I  D     ++   L    R  EA 
Sbjct: 465 EELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQ 500



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 23/242 (9%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
            T  G +   P    Y+ +++    E +++   +L ++           T+N        
Sbjct: 188 MTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYN-------- 239

Query: 83  LSVLSDLCRTLAR----------LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
            S++  LC+  A            DKG  P    Y+ +I   C L +++EA+R++  M+ 
Sbjct: 240 -SLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSG 298

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +T+  ++    +  R  EA  + + M      P+ T Y+ LL  Y  KG L  
Sbjct: 299 SGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALID 358

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
              +L  M  + +  + R ++ L+    + G V++A      M  +G     V YST  H
Sbjct: 359 VRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIH 418

Query: 249 VM 250
           ++
Sbjct: 419 IL 420



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 4/208 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           + LI  LC   + D+A+ +V   M E G+     +++ ++  L   K+ +EA  L+  M 
Sbjct: 130 NQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMT 189

Query: 166 E---IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
                  SP++ +YN ++  +  +G +     +  +M  + L  D  TY++L+ G C+A 
Sbjct: 190 ADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQ 249

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
            +++A  +L+ M D G      TY  ++     LG   +AV+ +    G  ++ D   + 
Sbjct: 250 AMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYS 309

Query: 283 SLGSKLIGLERFNEANFILKEMNKRDLK 310
            L      + R  EA  +   M ++  K
Sbjct: 310 LLIQYYCKIGRCAEARSVFDSMVRKGQK 337



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 2/172 (1%)

Query: 96  LDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G   R   Y+T++G LC+   +DEALR+ + +    F L   TF  +++ L +  R+
Sbjct: 612 VDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRI 671

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  L   M      PD+  Y+ ++ ++  +G L  +  +   ME+    AD+   + +
Sbjct: 672 DEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNII 731

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           V      G V  A   L + +D+    L ++ A ++  ++    Y + VKF+
Sbjct: 732 VRRLLEKGDVRRAGTYLTK-IDEKNFSLEASTAALLIPIVSEKKYQKEVKFL 782



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 35/192 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TLI   C + K+DE+++ +D M   G    + T++ +L+   +  R+E+A  L
Sbjct: 513 PDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALAL 572

Query: 161 MEVM--KEIRVSP---------------------------------DLTAYNYLLTAYCF 185
              M  K+++                                     +  YN +L   C 
Sbjct: 573 YREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCE 632

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
              +     + + +  ++   D RT+  ++    + GR++EA  L   MV  G      T
Sbjct: 633 NSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVIT 692

Query: 246 YAHVMGALLRLG 257
           Y+ ++ + +  G
Sbjct: 693 YSLMIKSHIEEG 704


>gi|219885451|gb|ACL53100.1| unknown [Zea mays]
          Length = 437

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 3/216 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   ++ T +  LC+    DEA   +D M   GF  S  TF  ++  L +  R+ +A  +
Sbjct: 54  PDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEV 113

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M  +   P +  YN L+   C+ G L     +LKK+++  L  D  T+  ++ G C+
Sbjct: 114 LDAMCGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCK 173

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM-VCGGRDIKLDTE 279
            GR EEA  +    +  G S    TY  ++    + G   +A   +M +CG  D     +
Sbjct: 174 VGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPD 233

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
              S G  L  L R  E +    +  KR  + GF++
Sbjct: 234 KT-SFGIVLTALLRAGETSAAW-QTYKRMERAGFEV 267



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 3/148 (2%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           ++E ++V+D++      L+   ++ ILS L R      A  L   M    V+PD  ++  
Sbjct: 5   VEERVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFRAMP---VAPDAHSFAT 61

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            +   C +G        L +M          T+ A+V   C+ GRV +A  +L  M   G
Sbjct: 62  AVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMCGLG 121

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFV 266
                 TY  ++G L  +G   +A++ +
Sbjct: 122 CEPTIRTYNSLVGGLCYVGRLEEALELL 149



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 76/212 (35%), Gaps = 49/212 (23%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG- 159
           P    Y++L+G LC + +++EAL ++  + +        TF  +L    +  R EEA   
Sbjct: 124 PTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAI 183

Query: 160 -----------------------------------LMEVM--KEIRVSPDLTAYNYLLTA 182
                                              LME+    +    PD T++  +LTA
Sbjct: 184 FHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIVLTA 243

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA--------GRVEEAFVLLRRM 234
               G  +A     K+ME      D R  D L  G CR         G  EE F    ++
Sbjct: 244 LLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEVFA---KV 300

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           V  G   +  TY  +  AL R G    AV  +
Sbjct: 301 VASGHEPVSYTYCLMAQALARGGEVDAAVALL 332



 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +EE   +++++     +  ++ YN +L+A    G+      + + M    +  DA ++  
Sbjct: 5   VEERVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFRAM---PVAPDAHSFAT 61

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
            V   CR G  +EA + L  MV  G     +T++ V+G L + G   +A++ +    G  
Sbjct: 62  AVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMCGLG 121

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +     + SL   L  + R  EA  +LK++    L
Sbjct: 122 CEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPL 157


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 1/163 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A+ TL+  LC+  ++ EA+ ++D M E G   + IT+  I+  + +      A  L
Sbjct: 175 PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 234

Query: 161 MEVMKEI-RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +  M+E+ R+ P++  Y+ ++      G  T    +  +M+E+ +  +  TY+ ++ G C
Sbjct: 235 LRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFC 294

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            +GR  EA  LLR M +   S    T++ ++ AL++ G + +A
Sbjct: 295 SSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEA 337



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 1/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE-GGFGLSAITFHPILSVLTRGKRMEEAWG 159
           P +  Y T++  +CK+     AL ++  M E      + + +  I+  L +  R  +A  
Sbjct: 210 PNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQN 269

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M+E  +SP+L  YN ++  +C  G  +    +L++M E K+  D  T+  L+    
Sbjct: 270 LFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALV 329

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G+  EA  L   M+  G      TY  ++    +      A +   +   +    D  
Sbjct: 330 KEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVI 389

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            F  L     G +R ++   +L EM++R L
Sbjct: 390 TFSILIDGYCGAKRVDDGMKLLHEMSRRGL 419



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/285 (20%), Positives = 118/285 (41%), Gaps = 13/285 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ +++    +  L+    +    A   C     TF+ + +       + D  + 
Sbjct: 351 PNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKL 410

Query: 93  LARLDK-GFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  + + G    +  Y TLI   C+L  ++ AL ++  M   G   + +T + +L  L  
Sbjct: 411 LHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCN 470

Query: 151 GKRMEEAWGLMEVMKEIR-----------VSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
             ++++A  + +VM++ +           V PD+  YN L+     +G  +    + ++M
Sbjct: 471 NGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEM 530

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
               L  D  TY++++ G C+  R++EA  +   M   G S    T+  ++    ++G  
Sbjct: 531 PHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRV 590

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              ++     G R I  +   + +L      +   N A  I +EM
Sbjct: 591 GDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEM 635



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 13/251 (5%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N + N   S    S+  R L  +   K  P    +  LI  L K  K  EA  + + M
Sbjct: 285 TYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEM 344

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   + IT++ ++   ++  R++ A  +  +M     SPD+  ++ L+  YC    +
Sbjct: 345 LPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRV 404

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                +L +M    L A+  TY  L+ G C+ G +  A  LL+ M+  G      T   +
Sbjct: 405 DDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTL 464

Query: 250 MGALLRLGYYAQAVKFVMVCGG-----------RDIKLDTELFGSLGSKLIGLERFNEAN 298
           +  L   G    A++   V               D++ D + +  L   LI   +F+EA 
Sbjct: 465 LDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAE 524

Query: 299 FILKEMNKRDL 309
            + +EM  R L
Sbjct: 525 ELYEEMPHRGL 535



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  L    K  EA  + + M   G     IT++ ++  L +  R++EA  +
Sbjct: 502 PDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQM 561

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M     SPD+  +  L+  YC  G +     V  +M    + A+A TY  L+ G C+
Sbjct: 562 FDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQ 621

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G +  A  + + M+  G
Sbjct: 622 VGNINGALDIFQEMISSG 639



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 11/209 (5%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           ++  LI   C   K+  AL     + + GF  S +TF  +L  L    R+ EA      +
Sbjct: 113 SFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI 172

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P++ A+  L+   C +G +     +L +M E+ L  +  TY  +V G C+ G  
Sbjct: 173 ----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 228

Query: 225 EEAFVLLRRMVD----DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             A  LLR+M +        V+YS    ++  L + G    A         + I  +   
Sbjct: 229 VSALNLLRKMEEVSRIKPNVVIYSA---IIDGLWKDGRQTDAQNLFSEMQEKGISPNLFT 285

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  + +      R++EA  +L+EM +R +
Sbjct: 286 YNCMINGFCSSGRWSEAQRLLREMFERKM 314



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 1/171 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           +KG  P    Y+ +I   C   +  EA R++  M E       +TF  +++ L +  +  
Sbjct: 276 EKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFF 335

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           EA  L   M    + P+   YN ++  +  +  L A   +   M  +    D  T+  L+
Sbjct: 336 EAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILI 395

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G C A RV++   LL  M   G      TY  ++    +LG    A+  +
Sbjct: 396 DGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLL 446


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 1/168 (0%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           +P    Y TL+  LC+  ++ EA  + + M +        +T++ +++   RG + + A 
Sbjct: 266 YPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRAR 325

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            +++ MK     P++  Y+ L+   C  G L    GVL +++   L  DA TY +L+   
Sbjct: 326 NVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFL 385

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           CR G+ +EA  LL  M ++G      T+  ++G L R G + +A+  V
Sbjct: 386 CRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMV 433



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           DL   +   D   P    Y+ LI   C+  K D A  V+  M   G   +   +  ++  
Sbjct: 290 DLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDG 349

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L +  ++E+A G++  +K   + PD   Y  L+   C  G       +L++M+E    AD
Sbjct: 350 LCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQAD 409

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           + T++ L+ G CR G+ EEA  ++ ++   G  +   +Y  V+ +L
Sbjct: 410 SVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSL 455



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 2/199 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL-SAITFHPILSVLTRGKRMEEAWG 159
           P    ++ L+   CK   +D A  +V+ M    F   + +T+  ++  L R  R++EA+ 
Sbjct: 231 PNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFD 290

Query: 160 LMEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
           L E M     + PD   YN L+  +C  G       V++ M+      +   Y ALV G 
Sbjct: 291 LFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGL 350

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C+ G++E+A  +L  +   G      TY  ++  L R G   +A++ +        + D+
Sbjct: 351 CKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADS 410

Query: 279 ELFGSLGSKLIGLERFNEA 297
             F  L   L    +F EA
Sbjct: 411 VTFNVLLGGLCREGKFEEA 429



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 4/226 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ L+N        +  R ++     + C+     ++ + +    +  L D    
Sbjct: 303 PDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGV 362

Query: 93  LARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           LA + KG    P    Y +LI  LC+  K DEA+ +++ M E G    ++TF+ +L  L 
Sbjct: 363 LAEI-KGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLC 421

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R  + EEA  ++E + +  V  +  +Y  +L +   K  L     +L  M          
Sbjct: 422 REGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYA 481

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           T + L++  C+AG V++A V L  +V+ G      T+  ++G + R
Sbjct: 482 TSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLICR 527



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 76/163 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y  L+  LCK+ K+++A  V+  +   G    A+T+  +++ L R  + +EA  
Sbjct: 337 YPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIE 396

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+E MKE     D   +N LL   C +G       +++K+ ++ +  +  +Y  ++    
Sbjct: 397 LLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLT 456

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +   ++ A  LL  M+  G    Y+T   ++  L + G    A
Sbjct: 457 QKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDA 499



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 2/172 (1%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS-PDLTAYNYLLTAYCFKGNLTATSGV 195
           +   F+ ++    +   ++ A+ ++E M+    S P+L  Y+ L+   C  G +     +
Sbjct: 232 NVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDL 291

Query: 196 LKKM-EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
            ++M   + +  D  TY+ L+ G CR G+ + A  +++ M  +G       Y+ ++  L 
Sbjct: 292 FEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLC 351

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           ++G    A   +    G  +K D   + SL + L    + +EA  +L+EM +
Sbjct: 352 KVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKE 403



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 61/131 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            ++ L+G LC+  K +EAL +V+ + + G  L+  ++  +L+ LT+   ++ A  L+ +M
Sbjct: 412 TFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLM 471

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P     N LL   C  G +   +  L  + E        T++ L+   CR  ++
Sbjct: 472 LRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLICRERKL 531

Query: 225 EEAFVLLRRMV 235
              F LL  +V
Sbjct: 532 LYVFELLDELV 542


>gi|242077660|ref|XP_002448766.1| hypothetical protein SORBIDRAFT_06g032810 [Sorghum bicolor]
 gi|241939949|gb|EES13094.1| hypothetical protein SORBIDRAFT_06g032810 [Sorghum bicolor]
          Length = 545

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 63/138 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C+   +D AL+++D M    + L+  TF PIL  +     ++ A  L
Sbjct: 164 PTPIDYTDLIFSFCRAGCLDNALQLLDEMRALNYPLTPHTFAPILKAICDNADIQAADAL 223

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+     PD+  YN  +   C  G+  A   V+          DA TY   ++G CR
Sbjct: 224 ISSMRSSGCLPDVVIYNIYIQGLCKIGDFDAVERVIYDSARNGWEPDAVTYSTYIVGLCR 283

Query: 221 AGRVEEAFVLLRRMVDDG 238
           +G +EEAF  L  MV  G
Sbjct: 284 SGYIEEAFQQLETMVAKG 301



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 59/127 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T I  LC+   I+EA + ++ M   G  L+ +  + +L  + +   M     +
Sbjct: 269 PDAVTYSTYIVGLCRSGYIEEAFQQLETMVAKGLQLTVVGLNILLDHVAQNLDMWVGKEV 328

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E  +E+    D+  YN ++   C KG       +   + ++ +  + +TY+ L+   CR
Sbjct: 329 LERCQELGFVVDVVTYNTVMDHLCKKGKWLRVLKLFTDLLKKPITPNVQTYNILISCLCR 388

Query: 221 AGRVEEA 227
           AG+ E A
Sbjct: 389 AGKFEFA 395



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 5/243 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNK-RARDCCFNTANTFNFITNT--ENSLSVLSD 88
            PT   Y DL+ +      L+    LL++ RA +    T +TF  I     +N+    +D
Sbjct: 163 PPTPIDYTDLIFSFCRAGCLDNALQLLDEMRALNYPL-TPHTFAPILKAICDNADIQAAD 221

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
              +  R     P    Y+  I  LCK+   D   RV+   A  G+   A+T+   +  L
Sbjct: 222 ALISSMRSSGCLPDVVIYNIYIQGLCKIGDFDAVERVIYDSARNGWEPDAVTYSTYIVGL 281

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            R   +EEA+  +E M    +   +   N LL       ++     VL++ +E     D 
Sbjct: 282 CRSGYIEEAFQQLETMVAKGLQLTVVGLNILLDHVAQNLDMWVGKEVLERCQELGFVVDV 341

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY+ ++   C+ G+      L   ++    +    TY  ++  L R G +  A K+V  
Sbjct: 342 VTYNTVMDHLCKKGKWLRVLKLFTDLLKKPITPNVQTYNILISCLCRAGKFEFA-KYVFS 400

Query: 269 CGG 271
             G
Sbjct: 401 SKG 403



 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 6/179 (3%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T++  LCK  K    L++   + +     +  T++ ++S L R  + E A     V  
Sbjct: 344 YNTVMDHLCKKGKWLRVLKLFTDLLKKPITPNVQTYNILISCLCRAGKFEFA---KYVFS 400

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                 D    N L+  +   G       +   +   K+  D  TY+ LV    R+GR  
Sbjct: 401 SKGFVADTVTCNILIHEFYEAGKEGELGFLFADVNAGKIAPDTITYNTLVDCLFRSGRRS 460

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +A   +R  +D G        AH+   L+R GY  +A++       + + LD  +F ++
Sbjct: 461 QAVNFVRH-IDGGYPT--EPVAHLTYWLVRSGYIREALRLFDDIQIKGLVLDCRIFANV 516


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI   CK  K D+A  + D M   G   + + 
Sbjct: 173 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVX 232

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 233 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 292

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L   G   
Sbjct: 293 XKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSV 352

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K D   +  + ++        + + +LKEM +
Sbjct: 353 DAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 398



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 90/210 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+    +L  +DE  R+   M   G      T+  +++   +  + ++A  L
Sbjct: 158 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANEL 217

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 218 FDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 277

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A +        + +LD   
Sbjct: 278 KGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVX 337

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 338 YTALISGLCXEGRSVDAEKMLREMLSVGLK 367



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N     +++   C+   R+
Sbjct: 188 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKN-GRV 246

Query: 97  DKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+  +
Sbjct: 247 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTL 306

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +     D   Y  L++  C +G       +L++M    L
Sbjct: 307 IDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGL 366

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             DARTY  ++   C+ G V +   LL+ M  DG      TY  +M  
Sbjct: 367 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 52/127 (40%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E + E      L  +N L+
Sbjct: 73  DAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM 132

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +Y+ L+ G  R G ++E F L   M+  G  
Sbjct: 133 HRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ 192

Query: 241 VLYSTYA 247
               TY+
Sbjct: 193 PDVYTYS 199


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 112/258 (43%), Gaps = 40/258 (15%)

Query: 33  PTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           P+ A Y+ L++     G   ++  V  LL +        TA TF  + N     S  +  
Sbjct: 224 PSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAA 283

Query: 90  CRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL-- 145
            R    + +     S   Y++LI  LC   K++E +++++ M + G   + ITF  +L  
Sbjct: 284 VRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKG 343

Query: 146 -----------------------------SVLTRGKR----MEEAWGLMEVMKEIRVSPD 172
                                        ++L  G R    ME+A  + E M +  +SP+
Sbjct: 344 FCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPN 403

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +T YN L+T +   G+  + SG+L +M+E+ + AD  TY+ L+   C  G V +A  LL 
Sbjct: 404 VTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLD 463

Query: 233 RMVDDGQSVLYSTYAHVM 250
            M + G    + TY  ++
Sbjct: 464 EMSEVGLEPNHLTYNTII 481



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  LI   CK      A+RV + M + G   S +T++ ++S L    ++EE   L
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ME M+++ +SP+   +  +L  +C KG +   +  +  M E  +  D   Y  L+ G  R
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRR 381

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++E+A  +   M   G S   +TY  ++    R G +  A   +     + I+ D   
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  L   L       +A  +L EM++  L+
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLE 471



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 3/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR---GKRMEEA 157
           P    ++T+I  LC++ ++ +A  V   +   G   S  T++ ++    +      M   
Sbjct: 189 PDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L++ M E  +SP    +  L+  YC   N  A   V ++M+++ + A   TY++L+ G
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISG 308

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  G+VEE   L+  M D G S    T+  V+    + G  A A  ++     R+++ D
Sbjct: 309 LCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPD 368

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             ++  L      L +  +A  + + M K+ +
Sbjct: 369 VVIYTILIDGYRRLGKMEDAMAVKEAMAKKGI 400



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI    +L K+++A+ V + MA+ G   +  T++ +++  +R      A GL
Sbjct: 367 PDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ MKE  +  D+  YN L+ A C KG +     +L +M E  L  +  TY+ ++ G C 
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCD 486

Query: 221 AGRVEEAFVLLRRM 234
            G ++ A+ +  RM
Sbjct: 487 KGNIKSAYEIRTRM 500



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 76/158 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ LI    +      A  ++D M E G     +T++ ++  L     + +A  L
Sbjct: 402 PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKL 461

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E+ + P+   YN ++  +C KGN+ +   +  +ME+ +  A+  TY+  +   C+
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQ 521

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
            G+++EA  LL  M+D        TY  +   ++  GY
Sbjct: 522 IGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGY 559



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 3/171 (1%)

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           S  + + +L+ L   KR++ A          RVSPD+  +N +++  C  G L     V 
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214

Query: 197 KKMEEEKLGADARTYDALVLGACR---AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           K ++   L     TY++L+ G C+   AG +    +LL+ MV+ G S    T+  ++   
Sbjct: 215 KDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGY 274

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +    A AV+       + I      + SL S L    +  E   +++EM
Sbjct: 275 CKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM 325


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D A  + D M   G   + +T
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVT 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 310 MKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSV 369

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++        + + +LKEM +
Sbjct: 370 DAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQR 415



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 67/153 (43%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK   + +A  ++D M+  G      T+  ++    +   ++ A+ 
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE 338

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M +  +  D  AY  L++  C +G       +L++M    L  D  TY  +V   C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFC 398

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + G V +   LL+ M  DG +    TY  +M  
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 49/116 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L  L + K  +  WG  E + E      L  +N L+  +C  G++     V   +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  L     +Y+ L+ G  R G ++E F L   M+  G      TY+ ++  L +
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 102/202 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T+I  LC  ++++EA  + + + E G   + IT++ I+  L R  R ++A  L
Sbjct: 449 PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 508

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M     S D+ +YN L+ A C  GN+  +  +L++M E+ +  +  +Y+ L+   C+
Sbjct: 509 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             RV +A  L ++M++ G +    TY  ++  L ++G+   A+  +      ++  D   
Sbjct: 569 ERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIIT 628

Query: 281 FGSLGSKLIGLERFNEANFILK 302
           +  L S    +   ++A  +L 
Sbjct: 629 YNILISWHCKVRLLDDAAMLLN 650



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 118/246 (47%), Gaps = 2/246 (0%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C   A+T++ + +    L  +    R L  ++K GF P    Y  ++   CK    D+  
Sbjct: 342 CQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTR 401

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +++ M+  G  L++  ++ ++  L +  RM+EA GL++ M+    +PD+ +YN ++   
Sbjct: 402 ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHL 461

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C    +     + + + EE + A+  TY+ ++    R GR ++A  L + M+  G S+  
Sbjct: 462 CNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDV 521

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            +Y  ++ A+ + G   +++  +     + IK +   +  L S+L    R  +A  + K+
Sbjct: 522 VSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQ 581

Query: 304 MNKRDL 309
           M  + L
Sbjct: 582 MLNQGL 587



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 109/234 (46%), Gaps = 5/234 (2%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
            E  L+  ++L  T+  L    P    Y  L+  LCKL +I  A+R++  M + GF  + 
Sbjct: 323 AEGKLAEATELYETMG-LKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNV 381

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T+  +L    +    ++   L+E M    ++ +   YN ++ A C  G +    G++++
Sbjct: 382 VTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE 441

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M  +    D  +Y+ ++   C   ++EEA  +   ++++G      TY  ++ ALLR G 
Sbjct: 442 MRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGR 501

Query: 259 YAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +  AV+    M+  G    LD   +  L   +      + +  +L+EM ++ +K
Sbjct: 502 WQDAVRLAKEMILHG--CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 73/129 (56%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ LI  +CK   +D +L +++ MAE G   + ++++ ++S L + +R+ +A  L + M
Sbjct: 523 SYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQM 582

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               ++PD+  YN L+   C  G + A   +L+K+  E +  D  TY+ L+   C+   +
Sbjct: 583 LNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLL 642

Query: 225 EEAFVLLRR 233
           ++A +LL R
Sbjct: 643 DDAAMLLNR 651



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 125/292 (42%), Gaps = 9/292 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           +++ + R   + G  PD   +  Y  +++A   +  +     LLN+     C    NTF+
Sbjct: 193 EALALLRGMARHGCVPD---AVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFD 249

Query: 75  FITNTENSLSVLSDLCRTLAR-LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            +      L  + +  R + R + KG  P    Y  L+  LC++++ DEA  ++  + E 
Sbjct: 250 DVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE- 308

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
              L+ + F+ ++       ++ EA  L E M      PD   Y+ L+   C  G + + 
Sbjct: 309 ---LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSA 365

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L++ME++    +  TY  ++   C+ G  ++   LL  M   G ++    Y  ++ A
Sbjct: 366 VRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYA 425

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           L + G   +A+  +     +    D   + ++   L   E+  EA  + + +
Sbjct: 426 LCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL 477



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 4/219 (1%)

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           L R +   D+  P    +      LC+L + DEAL ++  MA  G    A+ +  ++  L
Sbjct: 161 LYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHAL 220

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                + EA  L+  M  +  + D+  ++ ++   C  G +   + ++ +M  +      
Sbjct: 221 CDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGV 280

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY  L+ G CR  + +EA  +L R V +   VL++T   V+G  L  G  A+A +    
Sbjct: 281 MTYGFLLQGLCRVRQADEARAMLGR-VPELNVVLFNT---VIGGCLAEGKLAEATELYET 336

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            G +  + D   +  L   L  L R   A  +L+EM K+
Sbjct: 337 MGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKK 375



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 78  NTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           N + SL +L ++       +KG  P   +Y+ LI  LCK +++ +AL +   M   G   
Sbjct: 536 NVDRSLVLLEEMA------EKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAP 589

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
             +T++ +++ L +   M  A  L+E +    V PD+  YN L++ +C
Sbjct: 590 DIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHC 637


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D A  + D M   G   + +T
Sbjct: 186 LGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVT 245

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 246 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 305

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 306 XKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSV 365

Query: 261 QAVKFV 266
            A K +
Sbjct: 366 DAEKML 371



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +++A  L
Sbjct: 241 PNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 300

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL+ G C+
Sbjct: 301 IDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQ 360

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 361 EGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFCKKG 397



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 5/192 (2%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK   I  A  V D + + G   S ++++ +++   R   +
Sbjct: 130 LECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 189

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M      PD+  Y+ L+   C +  +   + +  +M  + L  +  T+  L
Sbjct: 190 DEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTL 249

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           + G C+ GRV+ A  + ++M+   QS+L    TY  ++  L + G   QA   +     +
Sbjct: 250 IDGHCKNGRVDLAMEIYKQML--SQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXK 307

Query: 273 DIKLDTELFGSL 284
            +K D   + +L
Sbjct: 308 GLKPDKFTYTTL 319



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 61/135 (45%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK   + +A  ++D M+  G      T+  ++    +   ++ A+ 
Sbjct: 275 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFX 334

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M +  +  D  AY  L++  C +G       +L++M    L  DA TY  ++   C
Sbjct: 335 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFC 394

Query: 220 RAGRVEEAFVLLRRM 234
           + G V +   LL+ M
Sbjct: 395 KKGDVWKGSKLLKEM 409



 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 49/116 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L  L + K  +  WG  E + E      L  +N L+  +C  G++     V   +
Sbjct: 105 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 164

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  L     +Y+ L+ G  R G ++E F L   M+  G      TY+ ++  L +
Sbjct: 165 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCK 220


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P    Y++LI  LC   K + A  ++  M + G  L+ I F+ I+    +  R+
Sbjct: 403 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 462

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            E+  L ++M  I V PD+  Y+ L+  YC  G +     +L  M    L  +  TY  L
Sbjct: 463 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTL 522

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           + G C+  R+ +A VL + M   G S    TY  ++  L +
Sbjct: 523 INGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQ 563



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 40/224 (17%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG- 159
           P    Y ++I  LCK + +D+A+ V+  M + G   +  T+  I+       + +EA G 
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGF 288

Query: 160 ---------------------------------------LMEVMKEIRVSPDLTAYNYLL 180
                                                  L+++M    + PD   YN L+
Sbjct: 289 LKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILI 348

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
            AY  +G +     V  KM ++ L  DA TY A++   C++GRVE+A +   +M+D+G S
Sbjct: 349 CAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLS 408

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
                Y  ++  L     + +A + ++    R I L+T  F S+
Sbjct: 409 PGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 452



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 91/204 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI    K  K+DEA+ V   M + G    A+T+  ++ +L +  R+E+A   
Sbjct: 339 PDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLY 398

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  +SP    YN L+   C          ++ +M +  +  +   +++++   C+
Sbjct: 399 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 458

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GRV E+  L   MV  G      TY+ ++      G   +A+K +       +K +T  
Sbjct: 459 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 518

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L +    + R  +A  + KEM
Sbjct: 519 YRTLINGYCKISRMGDALVLFKEM 542



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 1/206 (0%)

Query: 93  LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  LD+G    + + +++I   CK  ++ E+ ++ D+M   G     IT+  ++      
Sbjct: 435 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 494

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            +M+EA  L+  M  + + P+   Y  L+  YC    +     + K+ME   +  D  TY
Sbjct: 495 GKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITY 554

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
           + ++ G  +  R   A  L  R+ + G  +  STY  ++  L +      A++       
Sbjct: 555 NIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCL 614

Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
            D+KL+   F  +   L+ + R  EA
Sbjct: 615 MDLKLEARTFNIMIDALLKVGRNGEA 640



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSA---ITFHPILSVLTRGKRMEEAWGLMEVMK 165
           L+  LC   +  EAL +  +MA+G  G SA   +++  +++   +     +A+     M 
Sbjct: 164 LLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEML 223

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + R+SPD+  Y+ ++ A C    +     VL  M +  +  + RTY +++ G C +G+ +
Sbjct: 224 DRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPK 283

Query: 226 EAFVLLRRMVDDG 238
           EA   L+++  DG
Sbjct: 284 EAIGFLKKVRSDG 296



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 39/205 (19%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL--------------- 145
           P    Y  LIG  C+  ++D     +  + + GF + AITF P+L               
Sbjct: 85  PTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 146 -----------------SVLTRG----KRMEEAWGLMEVMKEIR---VSPDLTAYNYLLT 181
                            ++L +G     R +EA  L  +M + R    +PD+ +Y  ++ 
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVIN 204

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
            +  +G+         +M + ++  D  TY +++   C+   +++A  +L  MV +G   
Sbjct: 205 GFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMP 264

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFV 266
              TY  +M      G   +A+ F+
Sbjct: 265 NCRTYTSIMHGYCSSGQPKEAIGFL 289



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 86/217 (39%), Gaps = 5/217 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I    K     +A      M +       +T+  I++ L +G+ M++A  +
Sbjct: 194 PDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK-----MEEEKLGADARTYDALV 215
           +  M +  V P+   Y  ++  YC  G      G LKK     +E + L  D  TY  L+
Sbjct: 254 LTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLL 313

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G    G +     LL  MV +G    +  Y  ++ A  + G   +A+        + + 
Sbjct: 314 QGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLN 373

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
            D   +G++   L    R  +A    ++M    L  G
Sbjct: 374 PDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 410



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 1/163 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S Y+ ++  LCK K  D+ALR+   +      L A TF+ ++  L +  R  EA  L   
Sbjct: 587 STYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVA 646

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
                + P+   Y  +      +G L     +   ME+     D+   + +V    + G 
Sbjct: 647 FSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGE 706

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  A   L  M+D+    L ++ A +   LL  G Y +  +F+
Sbjct: 707 ITRAGTYL-SMIDEKHFSLEASTASLFIDLLSGGKYQEYHRFL 748


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  L++GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 188 LGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVT 247

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 248 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 307

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 308 MKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSV 367

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++        + + +LK+M +
Sbjct: 368 DAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQR 413



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 93/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TL+    +L  ++E  R+   M   G      T+  +++ L +  +M++A  L
Sbjct: 173 PSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 232

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 233 FDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 292

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A +        +I+LD   
Sbjct: 293 KGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVA 352

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 353 YTALISGLCQEGRSVDAEKMLREMLSVGLK 382



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 4/181 (2%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ L+ R CK   I  A  V D +A+ G   S ++++ +++   R   + E + L   M 
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              V PD+  Y+ L+   C +  +   + +  +M  + L  +  T+  L+ G C+ GRV+
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVD 262

Query: 226 EAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
            A  + ++M+   QS+L    TY  ++  L + G   QA   +     + +K D   + +
Sbjct: 263 LAMEIYKQML--SQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTT 320

Query: 284 L 284
           L
Sbjct: 321 L 321



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 68/153 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK   + +A  ++D M+  G     IT+  ++    +   ++ A+ 
Sbjct: 277 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFE 336

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M +  +  D  AY  L++  C +G       +L++M    L  D  TY  ++   C
Sbjct: 337 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFC 396

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + G V +   LL+ M  +G +    TY  +M  
Sbjct: 397 KKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +  LD+GF  KS             +  LI  LCK  K+D+A  + D M + G   + +T
Sbjct: 184 IGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  +   M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G +E AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LB G  P    + TLI   CK  ++D A+ +   M         IT++ ++  L +   +
Sbjct: 233 LBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDL 292

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++   L++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL
Sbjct: 293 KQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTAL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 94/210 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    K+  +DE  R+  +M   G      T   +++ L +  +M++A  L
Sbjct: 169 PSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  + P+   +  L+  +C  G +     + ++M  + L  D  TY+ L+ G C+
Sbjct: 229 FDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++   L+  M   G      TY  ++    + G    A ++       +I+LD   
Sbjct: 289 KGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 20/224 (8%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+   CK  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L  VM+   V PD+  ++ L+   C +  +   + +  +M +  L  +  T+  L
Sbjct: 188 DEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           + G C+ GRV+ A  + R+M+   QS+L    TY  ++  L + G               
Sbjct: 248 IDGHCKNGRVDLAMEIYRQML--SQSLLPDLITYNTLIYGLCKKG--------------- 290

Query: 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLR 316
           D+K   +L   +  K +  ++      I     + DL+  F+ R
Sbjct: 291 DLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYR 334



 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   +I  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  T+
Sbjct: 150 GEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTH 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++++A  L   M+B+G
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLBNG 236


>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 917

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 81  NSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           ++  V SD+ R      KGF P    Y++LIG  CK+ K++EAL++V  M + G      
Sbjct: 621 DAYDVFSDMLR------KGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIF 674

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T + I+  L +  RM+ A      M  + +SPD+  YN L+  YC   ++     ++ KM
Sbjct: 675 TVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKM 734

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
            +     D  TY+  + G C   ++  A ++L  ++  G    +V Y+T
Sbjct: 735 SDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNT 783



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 85/206 (41%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S  DTL+    K +   EAL ++  M E G   +      +  +L R       W L   
Sbjct: 219 SVLDTLMRAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGD 278

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           +      P+   +N L+  +C KG       +L  M + +   D  +Y+ ++   C  G+
Sbjct: 279 VVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQ 338

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
              A  LL  M+++G     +T+  ++ A  + G    A K+        +  +T ++  
Sbjct: 339 SSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNI 398

Query: 284 LGSKLIGLERFNEANFILKEMNKRDL 309
           + S  +     ++AN + +EM  +D+
Sbjct: 399 MISGYVKARDISQANLLFEEMRTKDI 424



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 64/138 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + + T+I   CK   ++ A +  D + + G   + I ++ ++S   + + + +A  L
Sbjct: 356 PSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLL 415

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M+   + PD   +N L+  +   G     + +L+ +    L  D+   D  V G C 
Sbjct: 416 FEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCW 475

Query: 221 AGRVEEAFVLLRRMVDDG 238
           AGR +EA  LL  ++  G
Sbjct: 476 AGRYDEAMKLLENLLGKG 493



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 62/147 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP   A+   I  LC    + +A  V   M   GF  +   ++ ++    +  ++ EA  
Sbjct: 600 FPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALK 659

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+  M +  + PD+   N ++   C +G +         M    L  D  TY+ L+ G C
Sbjct: 660 LVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYC 719

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTY 246
           +A  V  A  L+ +M D G     +TY
Sbjct: 720 KAFDVGGADDLMMKMSDSGWEPDLTTY 746



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 96  LDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKGFP  + A+  L+    ++  ++ A  + + M   G    A+ F   ++ L     M
Sbjct: 560 IDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLM 619

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A+ +   M      P+   YN L+  +C  G L     ++++M +  L  D  T + +
Sbjct: 620 TDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMI 679

Query: 215 VLGACRAGRVE---EAFVLLRRMVDDGQSVLYST 245
           + G C+ GR++   E F+ + RM      V Y+T
Sbjct: 680 ICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNT 713



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S  D  +  LC   + DEA+++++ +   G   S + F+ I++        E A+    +
Sbjct: 464 SLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGI 523

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M +  ++P  +  + LL +   KG+L      L  M ++        +  L+ G  R G 
Sbjct: 524 MVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGA 583

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           V  A  L   M   G       +A  +  L   G    A         +    +  ++ S
Sbjct: 584 VNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNS 643

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
           L      + + NEA  +++EMNKR L     L D + +N+
Sbjct: 644 LIGGFCKVGKLNEALKLVREMNKRGL-----LPDIFTVNM 678



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 15/176 (8%)

Query: 80  ENSLSVLSDLCRTLARLDKGF---------------PRKSAYDTLIGRLCKLKKIDEALR 124
           E+  SVL  L R   + +  F               P  SA   L   L +        +
Sbjct: 215 ESDYSVLDTLMRAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWK 274

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
           +   +   G   +  TF+ ++    R         L+ VM + R  PD+ +YN ++ A C
Sbjct: 275 LFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANC 334

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
            KG  +    +L  M E        T+  ++   C+ G VE A      + D G S
Sbjct: 335 LKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLS 390


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 12/154 (7%)

Query: 96  LDKGFPRKS------------AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           LD+GF  KS             Y  LI  LCK  K+D+A  + D M   G   + +TF  
Sbjct: 174 LDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 233

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +  R++ A  + + M    +SPDL  YN L+   C KG+L     ++ +M  + 
Sbjct: 234 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 293

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
           L  D  TY  L+ G C+ G ++ AF   +RM+ +
Sbjct: 294 LKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQE 327



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N     +++   C+   R+
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 244

Query: 97  DKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   + +A  ++D M+  G     IT+  +
Sbjct: 245 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTL 304

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           ++   +   ++ A+   + M +  +  D  AY  L++  C +G       +L++M    L
Sbjct: 305 INGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGL 364

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             DARTY  ++   C+ G V     LL+ M  DG      TY  +M  
Sbjct: 365 KPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 56/135 (41%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  E + E      L  +N L+
Sbjct: 71  DAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM 130

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C  G++     V   + +  L     +Y+ L+ G  R G ++E F L   M+  G  
Sbjct: 131 HRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQ 190

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 191 PDVYTYSVLINGLCK 205



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 87/221 (39%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK         + + E G+  S   F+ ++    
Sbjct: 75  CYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFC 134

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L+  Y   G+L     +   M    +  D  
Sbjct: 135 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVY 194

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  L+ G C+  ++++A  L   M+  G      T+  ++    + G    A++     
Sbjct: 195 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 254

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             + +  D   + +L   L       +A+ ++ EM+ + LK
Sbjct: 255 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 295


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 1/183 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G+P     ++ L+ RLCK  KI+EA  +   + + G   + ++F+ +++   +   +
Sbjct: 217 LDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNL 276

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++ + L   M E RV PD+  Y+ L+   C +G L   + +  +M +  L  +  T+  L
Sbjct: 277 DQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTL 336

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C  GR +    + ++M+  G      TY  ++  L ++G   +A K V+    R +
Sbjct: 337 INGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGL 396

Query: 275 KLD 277
           K D
Sbjct: 397 KPD 399



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK+  + EA ++V  M + G      T+  ++    +   +E A  +
Sbjct: 363 PDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  +  D  A+  L++ +C +G +      L++M E  +  D  TY  ++ G C+
Sbjct: 423 RKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCK 482

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G V+  F LL+ M  DG      TY  ++  L + G    A
Sbjct: 483 KGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNA 524



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 68/138 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y  LI   CK   ++ AL +   M + G  L  + F  ++S   R  ++ EA   
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  + PD   Y  ++  +C KG++     +LK+M+ +       TY+ L+ G C+
Sbjct: 458 LREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCK 517

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G+++ A +LL  M++ G
Sbjct: 518 QGQMKNANMLLDAMLNLG 535



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 14/209 (6%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L  RL KL     A    + + + G+      F+ ++  L +  ++ EA  L   + +  
Sbjct: 196 LFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRG 255

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + P + ++N L+  YC  GNL     + + M E ++  D  TY  L+ G C+ G++++A 
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315

Query: 229 VLLRRMVDDG---QSVLYSTY--AHVMGALLRLGY--YAQAVKFVMVCGGRDIKLDTELF 281
            L   M D G     V ++T    H +     LG   Y Q ++       + +K D   +
Sbjct: 316 KLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR-------KGVKPDVITY 368

Query: 282 GSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +L + L  +    EA  ++ EM +R LK
Sbjct: 369 NTLINGLCKVGDLREAKKLVIEMTQRGLK 397



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 8/174 (4%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E++L +  ++ +    LD       A+  LI   C+  ++ EA R +  M E G      
Sbjct: 417 ESALEIRKEMVKEGIELDN-----VAFTALISGFCREGQVIEAERTLREMLEAGIKPDDA 471

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  ++    +   ++  + L++ M+     P +  YN LL   C +G +   + +L  M
Sbjct: 472 TYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAM 531

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
               +  D  TY+ L+ G C+ G  E+     +   + G    Y +Y  ++G L
Sbjct: 532 LNLGVVPDDITYNILLEGHCKHGNRED---FDKLQSEKGLVQDYGSYTSLIGDL 582


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 92/210 (43%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +L   +   D   P    + ++I  LCK  ++ E   ++D+M + G   + +TF+ ++  
Sbjct: 437 ELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEG 496

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
                 MEEA+ L++ M  I + P+   Y  L+  YC  G +     V + M  + +   
Sbjct: 497 YCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPT 556

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           +  Y  ++ G  +A R   A  +   M++ G +V   TY  V+G L R     +A   + 
Sbjct: 557 SVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLE 616

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
                ++K D   F  + S +  + R  EA
Sbjct: 617 KLFAMNVKFDIITFNIVISAMFKVGRRQEA 646



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 104/238 (43%), Gaps = 4/238 (1%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           + T T++ L+ + ++   +  L KG  P K  ++ LI    +   +D+A+ + + M   G
Sbjct: 319 YATATDSCLADVHNIFNLM--LTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKG 376

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
                +TF  ++S L R  R+++A      M +I V P    Y  L+   C  G L    
Sbjct: 377 MIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAK 436

Query: 194 GVLKKMEEEKLGADARTY-DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            ++ +M  + +      Y  +++   C+ GRV E   ++  MV  GQ     T+  +M  
Sbjct: 437 ELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEG 496

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              +G   +A   +       I+ +  ++G+L        R ++A  + ++M  + +K
Sbjct: 497 YCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVK 554



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 90  CRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           C  L  +++G  P+    +++I  LCK+K++D+A  +V  M + G      T+  I+  L
Sbjct: 155 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 214

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            + K M++A  ++E M E    P+   YN L+  Y   G    +  V K+M    +    
Sbjct: 215 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTV 274

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAH 248
              ++ +    + GR  EA  +   MV  G     + YST  H
Sbjct: 275 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLH 317



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 4/151 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI    ++ + D  L +V  + + G G    ++  I   +  G+ +++A  L
Sbjct: 98  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGE-VDKAHCL 156

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V P +   N ++   C    +     +++KM +  +  D  TY  ++ G C+
Sbjct: 157 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 216

Query: 221 AGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           +  +++A  +L +MV+ G    S+ Y++  H
Sbjct: 217 SKAMDKAERVLEQMVEAGTRPNSITYNSLIH 247



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 12/237 (5%)

Query: 33  PTSAYYDDLVNAAGHE------RDLETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSV 85
           P   Y+  ++N    E      +D+  +     +R     FN+    +  + N E + ++
Sbjct: 450 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 509

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L  +           P    Y TL+   CK  +ID+AL V   M   G   +++ +  IL
Sbjct: 510 LDAMASIGIE-----PNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIIL 564

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L + +R   A  +   M E   +  +  Y  +L   C        + +L+K+    + 
Sbjct: 565 HGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK 624

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            D  T++ ++    + GR +EA  L   +   G      TY+ ++  L++   Y +A
Sbjct: 625 FDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEA 681



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 50/223 (22%)

Query: 84  SVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           S++ +LC+ +  +DK              P    Y  +I  LCK K +D+A RV++ M E
Sbjct: 174 SIIKELCK-MKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 232

Query: 132 GGFGLSAITFHPI-----------------------------------LSVLTRGKRMEE 156
            G   ++IT++ +                                   +  L +  R  E
Sbjct: 233 AGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNE 292

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN--LTATSGVLKKMEEEKLGADARTYDAL 214
           A  + + M      PD+ +Y+ +L  Y    +  L     +   M  + +  +   ++ L
Sbjct: 293 AKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNIL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +    R G +++A ++   M + G      T+A V+ +L R+G
Sbjct: 353 INAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIG 395



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 7/208 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           +++L+V  D+      L KG  P    Y  ++  L + ++   A ++   M E G  +S 
Sbjct: 539 DDALTVFRDM------LHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSI 592

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T+  +L  L R    +EA  L+E +  + V  D+  +N +++A    G       +   
Sbjct: 593 HTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDA 652

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           +    L  + +TY  ++    +    EEA  L   +   G +       H++  LL    
Sbjct: 653 ISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAE 712

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGS 286
            A+A  ++ + G  ++ L+      L S
Sbjct: 713 VAKASNYLSIIGENNLTLEASTISLLAS 740


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 18/189 (9%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+++A  + D M   G   + +T
Sbjct: 184 LGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEI---RVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           F  ++    +   ++ A   ME  KE+     SPDL  YN L+   C +G+L     ++ 
Sbjct: 244 FTTLIDGHCKTGSIDLA---MEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLID 300

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M  + L  D  TY  L+ G+C+ G +E AF   +RM+ +   +    Y  ++  L R G
Sbjct: 301 EMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREG 360

Query: 258 YYAQAVKFV 266
               A K +
Sbjct: 361 QSVGAEKML 369



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 18/216 (8%)

Query: 42  VNAAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLA 94
           ++ +G + D+ T   L+N   ++   N AN           + N     +++   C+T +
Sbjct: 197 MHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGS 256

Query: 95  ----------RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
                      L +GF P    Y+TLI  LCK   + +A  ++D M+  G     IT+  
Sbjct: 257 IDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   +E A+   + M +  +  D  AY  L++  C +G       +L++M    
Sbjct: 317 LIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVG 376

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           L  D  TY  ++   C+ G V+    LL+ M  DG 
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGH 412



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 91/210 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    +L  +DE  R+   M   G      T+  +++ L +  +M +A  L
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    + P+   +  L+  +C  G++       K+M  +    D  TY+ L+ G C+
Sbjct: 229 FDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A K+       +I+LD   
Sbjct: 289 EGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    +   A  +L+EM    LK
Sbjct: 349 YTALISGLCREGQSVGAEKMLREMLSVGLK 378



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 56/137 (40%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           + +AL    +  E  F +   T   +L    + K  +  WG  + + E      L  +N 
Sbjct: 82  LHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNI 141

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+  +C +G +     V  ++ +  L     +++ L+ G  R G ++E F L   M   G
Sbjct: 142 LMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSG 201

Query: 239 QSVLYSTYAHVMGALLR 255
                 TY+ ++  L +
Sbjct: 202 IQPDVYTYSVLINGLCK 218



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 58/149 (38%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++    KLK           + E G+  S   F+ ++    
Sbjct: 88  CFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFC 147

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   M  A  + + + +  + P + ++N L+  Y   G+L     +   M    +  D  
Sbjct: 148 KEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVY 207

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G C+  ++ +A  L   M+ +G
Sbjct: 208 TYSVLINGLCKESKMNDANELFDEMIGNG 236


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 2/224 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L+N       +   + LL +   +    T  TFN + +       L     
Sbjct: 270 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 329

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+ + +    P   +Y +++   CK  KI EA+ ++D M       +A  ++ I+    
Sbjct: 330 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 389

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
                ++A+ L+E MK   +SP +  YN L+   C +  ++    ++  +   +L  DA 
Sbjct: 390 EHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 449

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +Y+ L+   C  G +++A  L +RM   G      TY  ++  L
Sbjct: 450 SYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGL 493



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 10/221 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   ++ L++A G    LE    +L++   +       ++  I N   +      +   
Sbjct: 306 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVN---AFCKNGKIPEA 362

Query: 93  LARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +A LD  F     P    Y+ +I    +    D+A  +V+ M   G   S +T++ ++  
Sbjct: 363 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 422

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++ EA  ++  +   R+ PD  +YN L++A C++GN+     + ++M +  + + 
Sbjct: 423 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 482

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
            RTY  L+ G   AGR+ E   L ++M+ +  +V+ S   H
Sbjct: 483 VRTYHQLISGLGGAGRLNEMEYLYQKMMQN--NVVPSNAIH 521



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 105/221 (47%), Gaps = 2/221 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK ++I  A  ++  M + G   +  TF+ ++    R  ++E+ + +
Sbjct: 271 PDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIV 330

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  + P++ +Y  ++ A+C  G +     +L  M  + +  +A+ Y+A++     
Sbjct: 331 LSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVE 390

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  ++AF+L+ +M  +G S    TY  ++  L      ++A + +       +  D   
Sbjct: 391 HGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVS 450

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
           + +L S        ++A  + + M+K  +K    +R Y+++
Sbjct: 451 YNTLISACCYRGNIDKALDLQQRMHKYGIKS--TVRTYHQL 489



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 89/209 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+TLI   C+  +++ A      M         IT++ +++ L + +R+  A  L
Sbjct: 236 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 295

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  V+P +  +N L+ AY   G L     VL +M+E  L  +  +Y ++V   C+
Sbjct: 296 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 355

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ EA  +L  M           Y  ++ A +  G   QA   V       I      
Sbjct: 356 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVT 415

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   L    + +EA  I+  ++   L
Sbjct: 416 YNLLIKGLCNQSQISEAEEIINSLSNHRL 444



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 91/200 (45%), Gaps = 1/200 (0%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  LCK  K+  A  V+  +   G   + + ++ +++   +   +E A+     MK   
Sbjct: 209 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 268

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD   YN L+   C    +T    +L +M++  +     T++ L+    R G++E+ F
Sbjct: 269 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 328

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
           ++L  M ++G      +Y  ++ A  + G   +AV  +     +D+  + +++ ++    
Sbjct: 329 IVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAY 388

Query: 289 IGLERFNEANFILKEMNKRD 308
           +     N+  FIL E  K +
Sbjct: 389 VE-HGPNDQAFILVEKMKSN 407



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 85/205 (41%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I    K   ++   R+ D M   G   +AIT++ +LS L R  RM E   
Sbjct: 95  LPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSA 154

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M   ++ PD   Y+ L       G+  A   +  K  +  +     T   L+ G C
Sbjct: 155 LLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLC 214

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G+V  A  +L+ +V+ G       Y  ++    + G    A         R IK D  
Sbjct: 215 KDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHI 274

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            + +L + L   ER   A  +L EM
Sbjct: 275 TYNALINGLCKAERITNAQDLLMEM 299



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 11/236 (4%)

Query: 85  VLSDLCR------TLARLD-----KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           +LS LCR      T A LD     K  P    Y  L   L +       L +     + G
Sbjct: 139 LLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNG 198

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
             +   T   +L+ L +  ++  A  +++ +    + P    YN L+  YC  G L    
Sbjct: 199 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 258

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
               +M+   +  D  TY+AL+ G C+A R+  A  LL  M D+G +    T+  ++ A 
Sbjct: 259 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 318

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            R G   +    +       +K +   +GS+ +      +  EA  IL +M  +D+
Sbjct: 319 GRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDV 374



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 77/169 (45%)

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + R + R     P   +Y+ +I  + +  +  +A+ V D M E     + IT++ ++   
Sbjct: 49  MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 108

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +G  +E  + L + M    + P+   YN LL+  C  G +  TS +L +M  +K+  D 
Sbjct: 109 IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 168

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            TY  L  G  R G  +    L  + + +G ++   T + ++  L + G
Sbjct: 169 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDG 217



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 17/205 (8%)

Query: 19  VTRSFTKSGAFPDE-------------PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC 65
           +  +F K+G  P+              P +  Y+ +++A       +    L+ K   + 
Sbjct: 349 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 408

Query: 66  CFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122
              +  T+N +      ++ +S   ++  +L+   +  P   +Y+TLI   C    ID+A
Sbjct: 409 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSN-HRLIPDAVSYNTLISACCYRGNIDKA 467

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           L +   M + G   +  T+H ++S L    R+ E   L + M +  V P    +N ++ A
Sbjct: 468 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEA 527

Query: 183 YCFKGNLTATSGVLKKMEEEKLGAD 207
           Y   GN      + K+M +++   D
Sbjct: 528 YSKYGNEIKAEDLRKEMLQKRNNHD 552



 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA- 206
           L R   +  A+G   ++      PD  A+N  + A    G+L    G+L++M  +  GA 
Sbjct: 5   LGRHADVRRAFG---ILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRD--GAP 59

Query: 207 --DARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTY--AHVMGALLRLGYY 259
             +A +Y+ ++ G  RAGR  +A  +   M +       + Y+T    H+ G  L  G+ 
Sbjct: 60  PPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF- 118

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              ++  MVC G  +K +   +  L S L    R  E + +L EM  + +
Sbjct: 119 --RLRDQMVCHG--LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKM 164


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 2/224 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L+N       +   + LL +   +    T  TFN + +       L     
Sbjct: 407 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 466

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+ + +    P   +Y +++   CK  KI EA+ ++D M       +A  ++ I+    
Sbjct: 467 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 526

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
                ++A+ L+E MK   +SP +  YN L+   C +  ++    ++  +   +L  DA 
Sbjct: 527 EHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 586

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +Y+ L+   C  G +++A  L +RM   G      TY  ++  L
Sbjct: 587 SYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGL 630



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 105/221 (47%), Gaps = 2/221 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK ++I  A  ++  M + G   +  TF+ ++    R  ++E+ + +
Sbjct: 408 PDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIV 467

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  + P++ +Y  ++ A+C  G +     +L  M  + +  +A+ Y+A++     
Sbjct: 468 LSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVE 527

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  ++AF+L+ +M  +G S    TY  ++  L      ++A + +       +  D   
Sbjct: 528 HGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVS 587

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
           + +L S        ++A  + + M+K  +K    +R Y+++
Sbjct: 588 YNTLISACCYRGNIDKALDLQQRMHKYGIKS--TVRTYHQL 626



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 10/221 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   ++ L++A G    LE    +L++   +       ++  I N   +      +   
Sbjct: 443 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVN---AFCKNGKIPEA 499

Query: 93  LARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +A LD  F     P    Y+ +I    +    D+A  +V+ M   G   S +T++ ++  
Sbjct: 500 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 559

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++ EA  ++  +   R+ PD  +YN L++A C++GN+     + ++M +  + + 
Sbjct: 560 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 619

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
            RTY  L+ G   AGR+ E   L ++M+ +  +V+ S   H
Sbjct: 620 VRTYHQLISGLGGAGRLNEMEYLYQKMMQN--NVVPSNAIH 658



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 89/209 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+TLI   C+  +++ A      M         IT++ +++ L + +R+  A  L
Sbjct: 373 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 432

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  V+P +  +N L+ AY   G L     VL +M+E  L  +  +Y ++V   C+
Sbjct: 433 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 492

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ EA  +L  M           Y  ++ A +  G   QA   V       I      
Sbjct: 493 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVT 552

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   L    + +EA  I+  ++   L
Sbjct: 553 YNLLIKGLCNQSQISEAEEIINSLSNHRL 581



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 91/200 (45%), Gaps = 1/200 (0%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  LCK  K+  A  V+  +   G   + + ++ +++   +   +E A+     MK   
Sbjct: 346 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 405

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD   YN L+   C    +T    +L +M++  +     T++ L+    R G++E+ F
Sbjct: 406 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 465

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
           ++L  M ++G      +Y  ++ A  + G   +AV  +     +D+  + +++ ++    
Sbjct: 466 IVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAY 525

Query: 289 IGLERFNEANFILKEMNKRD 308
           +     N+  FIL E  K +
Sbjct: 526 VE-HGPNDQAFILVEKMKSN 544



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 85/205 (41%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I    K   ++   R+ D M   G   +AIT++ +LS L R  RM E   
Sbjct: 232 LPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSA 291

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M   ++ PD   Y+ L       G+  A   +  K  +  +     T   L+ G C
Sbjct: 292 LLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLC 351

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G+V  A  +L+ +V+ G       Y  ++    + G    A         R IK D  
Sbjct: 352 KDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHI 411

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            + +L + L   ER   A  +L EM
Sbjct: 412 TYNALINGLCKAERITNAQDLLMEM 436



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 11/236 (4%)

Query: 85  VLSDLCR------TLARLD-----KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           +LS LCR      T A LD     K  P    Y  L   L +       L +     + G
Sbjct: 276 LLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNG 335

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
             +   T   +L+ L +  ++  A  +++ +    + P    YN L+  YC  G L    
Sbjct: 336 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 395

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
               +M+   +  D  TY+AL+ G C+A R+  A  LL  M D+G +    T+  ++ A 
Sbjct: 396 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 455

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            R G   +    +       +K +   +GS+ +      +  EA  IL +M  +D+
Sbjct: 456 GRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDV 511



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 77/169 (45%)

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + R + R     P   +Y+ +I  + +  +  +A+ V D M E     + IT++ ++   
Sbjct: 186 MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 245

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +G  +E  + L + M    + P+   YN LL+  C  G +  TS +L +M  +K+  D 
Sbjct: 246 IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 305

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            TY  L  G  R G  +    L  + + +G ++   T + ++  L + G
Sbjct: 306 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDG 354



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 17/205 (8%)

Query: 19  VTRSFTKSGAFPDE-------------PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC 65
           +  +F K+G  P+              P +  Y+ +++A       +    L+ K   + 
Sbjct: 486 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 545

Query: 66  CFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122
              +  T+N +      ++ +S   ++  +L+   +  P   +Y+TLI   C    ID+A
Sbjct: 546 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSN-HRLIPDAVSYNTLISACCYRGNIDKA 604

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           L +   M + G   +  T+H ++S L    R+ E   L + M +  V P    +N ++ A
Sbjct: 605 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEA 664

Query: 183 YCFKGNLTATSGVLKKMEEEKLGAD 207
           Y   GN      + K+M +++   D
Sbjct: 665 YSKYGNEIKAEDLRKEMLQKRNNHD 689



 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 11/145 (7%)

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL-GADARTYDALVLGACRAGRVEEAFV 229
           PD  A+N  + A    G+L    G+L++M  +     +A +Y+ ++ G  RAGR  +A  
Sbjct: 162 PDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVE 221

Query: 230 LLRRMVDDG---QSVLYSTY--AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +   M +       + Y+T    H+ G  L  G+    ++  MVC G  +K +   +  L
Sbjct: 222 VFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFR---LRDQMVCHG--LKPNAITYNVL 276

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            S L    R  E + +L EM  + +
Sbjct: 277 LSGLCRAGRMGETSALLDEMASQKM 301


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 5/209 (2%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P K  Y T++  L    ++D+A+ +V  M   G  ++A  F+P+L  + R   +  A
Sbjct: 309 KLVPDKFTYSTVVSALADAGRVDDAVALVHEMVVDGV-VAAEAFNPVLGAMLRTGDVTGA 367

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L   M+    +P    YN LL      G   A  GV+++ME  ++     TY A+V G
Sbjct: 368 AKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDG 427

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIK 275
             R GR+E+A  ++  M   G       ++ V+    +LG   +A +    MV  G  IK
Sbjct: 428 LVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAG--IK 485

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  L+ ++   L    +  EA  + +EM
Sbjct: 486 PNVVLYSAMIDGLARCGKMTEAELLFREM 514



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 2/155 (1%)

Query: 86  LSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           L D C+ +  +  KG  P +  +  +I   CKL ++D A RV D M   G   + + +  
Sbjct: 434 LEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSA 493

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++  L R  +M EA  L   M E +  P++  Y+ ++  Y   G+ +      + M    
Sbjct: 494 MIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIG 553

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
              +A TY  L+ G C  GR ++A ++ + M+  G
Sbjct: 554 CTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRG 588



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 77/165 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ L+  L    +   A+ V+  M         +T+  ++  L R  R+E+A  +
Sbjct: 381 PSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKV 440

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M+   + P+   ++ ++T +C  G +   S V   M    +  +   Y A++ G  R
Sbjct: 441 IEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLAR 500

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G++ EA +L R M++        TY+ ++    ++G  +QA+ F
Sbjct: 501 CGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSF 545



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 78/179 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  ++  L +  ++++A +V++ M   G   +   F P+++   +   ++ A  + + M 
Sbjct: 421 YGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMV 480

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y+ ++      G +T    + ++M E K   +  TY ++V G  + G   
Sbjct: 481 AAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSS 540

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +A      M+  G +    TY+ ++  L  +G    A+       GR    DT  + S+
Sbjct: 541 QALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSM 599



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 16/189 (8%)

Query: 137 SAITFHPILSVLTR---GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT--- 190
           +AIT H   S L R      +  A+    + +  R++P L ++N LL   C   +L    
Sbjct: 232 AAITHHSFNSALLRFPLPPHLLPAFFSHSLRRFTRLAPTLLSFNLLLKCVC--SSLVPRN 289

Query: 191 -------ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
                  A   V + +   KL  D  TY  +V     AGRV++A  L+  MV DG  V  
Sbjct: 290 HQLYLELALRVVHRSIPAWKLVPDKFTYSTVVSALADAGRVDDAVALVHEMVVDG-VVAA 348

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
             +  V+GA+LR G    A K       +        +  L   L+   R   A  +++ 
Sbjct: 349 EAFNPVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRR 408

Query: 304 MNKRDLKMG 312
           M + ++  G
Sbjct: 409 MERAEVVPG 417


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 98/203 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+T+I  LC   ++DEA  +   + E G   + IT++ ++  L    R +E   L
Sbjct: 454 PDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRL 513

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M       D+ +YN L+ A C +GN+  +  +L++M  + +  +  +Y+ L+   C+
Sbjct: 514 ANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCK 573

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG+V +A  L + M++ G +    TY  ++  L ++G+   A+  +      ++  D   
Sbjct: 574 AGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVT 633

Query: 281 FGSLGSKLIGLERFNEANFILKE 303
           +  L S    +   ++A+ +L +
Sbjct: 634 YNILISWHCKVRLLDDASMLLDK 656



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 2/246 (0%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C    +T+N + +    L       R L  ++ KG  P    Y TL+   C+    D+A 
Sbjct: 347 CPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDAR 406

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            ++D M+  GF +++  ++ I+  L +  +++EA  L++ MK     PD+  YN ++   
Sbjct: 407 AMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHL 466

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C    +     +   + EE + A+  TY+ L+     +GR +E   L   MV  G  +  
Sbjct: 467 CNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDV 526

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            +Y  ++ AL + G   +++  +     + IK +   +  L ++L    +  +A  + KE
Sbjct: 527 VSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKE 586

Query: 304 MNKRDL 309
           M  + L
Sbjct: 587 MLNQGL 592



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 122/287 (42%), Gaps = 11/287 (3%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           R   + G  PD   +  Y  +++A   +  +     LL++     C    NTFN +    
Sbjct: 204 RGMARHGCVPD---AVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGL 260

Query: 81  NSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
             L  + +  R + R+      P    Y  L+  LC+ ++ DEA  ++  + E    ++ 
Sbjct: 261 CGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPE----VNV 316

Query: 139 ITFHPIL-SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           +  + ++   L  GK +  A  L E+M      PD+  YN L+   C  G   +   +L 
Sbjct: 317 VMLNTVIRGCLAEGK-LARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLD 375

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +MEE+    +  TY  L+   CR G  ++A  +L +M   G S+    Y  ++ AL + G
Sbjct: 376 EMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDG 435

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              +A++ V     +  K D   + ++   L   ++ +EA  I   +
Sbjct: 436 KLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNL 482



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 4/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCKL +   A+R++D M E G   + +T+  +L    R    ++A  +
Sbjct: 349 PDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAM 408

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M     S +   YN ++ A    G L     ++++M+ +    D  TY+ ++   C 
Sbjct: 409 LDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCN 468

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
             +++EA  +   ++++G      TY  ++ ALL  G + + ++    MV  G    LD 
Sbjct: 469 NDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHG--CPLDV 526

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
             +  L   L      + +  +L+EM  + +K
Sbjct: 527 VSYNGLIKALCKEGNVDRSMMLLEEMMTKGIK 558



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 70/134 (52%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ LI  LCK   +D ++ +++ M   G   +  +++ +++ L +  ++ +A  L + M
Sbjct: 528 SYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEM 587

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               ++PD+  YN L+   C  G   A   +L+K+  E +  D  TY+ L+   C+   +
Sbjct: 588 LNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLL 647

Query: 225 EEAFVLLRRMVDDG 238
           ++A +LL + V  G
Sbjct: 648 DDASMLLDKAVSGG 661



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 92/211 (43%), Gaps = 4/211 (1%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P    +      LC+L +  +AL ++  MA  G    A+ +  ++  L     + E
Sbjct: 174 DRVPPTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAE 233

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L++ M  +  + D+  +N ++   C  G++   + ++ +M          TY  L+ 
Sbjct: 234 AATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLR 293

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
           G CR  + +EA+ +L R V +   V+ +T   V+   L  G  A+A +   + G +    
Sbjct: 294 GLCRTRQADEAYAMLGR-VPEVNVVMLNT---VIRGCLAEGKLARATELYEMMGSKGCPP 349

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           D   +  L   L  L R   A  +L EM ++
Sbjct: 350 DVHTYNILMHGLCKLGRCGSAVRMLDEMEEK 380



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 14/186 (7%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSVLSDLC 90
           Y+ L++A  H    +    L N+     C     ++N +        N + S+ +L ++ 
Sbjct: 494 YNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEM- 552

Query: 91  RTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                + KG  P   +Y+ LI  LCK  K+ +AL +   M   G     +T++ +++ L 
Sbjct: 553 -----MTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLC 607

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +      A  L+E +    V PD+  YN L++ +C    L   S +L K     +  + R
Sbjct: 608 KVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNER 667

Query: 210 TYDALV 215
           T+  +V
Sbjct: 668 TWGMMV 673



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 8/172 (4%)

Query: 91  RTLARLDKGFPRKSA-------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           R L  LD+  PR+ A       Y+ ++  L +     +AL +   M       +  TF  
Sbjct: 127 RALHLLDQ-MPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGV 185

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
               L R  R  +A  L+  M      PD   Y  ++ A   +G +   + +L +M    
Sbjct: 186 AARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMG 245

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             AD  T++ +VLG C  G V EA  L+ RM+  G +    TY  ++  L R
Sbjct: 246 CAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCR 297



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 51/127 (40%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           +++ +LS L R     +A  L   M   RV P    +     A C  G       +L+ M
Sbjct: 147 SYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALLRGM 206

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
                  DA  Y  ++      G V EA  LL  M+  G +   +T+  V+  L  LG+ 
Sbjct: 207 ARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHV 266

Query: 260 AQAVKFV 266
            +A + V
Sbjct: 267 REAARLV 273


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 103/214 (48%), Gaps = 2/214 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++KG  P    Y T+I    K+  ++ A  ++++MA+ G G     ++ ++    + +R+
Sbjct: 600 IEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERV 659

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDA 213
           ++A+G+ + M    + P+   +N L+      G       + K+M E++++     +Y  
Sbjct: 660 DQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTI 719

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+ G  +AGRV EAF   + M+D G      TY  ++ +L + G   +A K V       
Sbjct: 720 LIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLG 779

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +  D + + +L + LI     + A  + +EM KR
Sbjct: 780 VNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKR 813



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 2/247 (0%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL-DKG-FPRKSAYDTLIGRLCKLKKIDEAL 123
           C  T  T+  + +      +L D C+   ++  KG  P    Y TLI    K  K+DEA 
Sbjct: 429 CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEAR 488

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           +++D+M   G   +A+T+  I+    +   + EA  ++  M+E    P L  +  LL+ Y
Sbjct: 489 KLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 548

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
             KG       VL +M       D   Y +L+      GRV EA  +   M++ G +   
Sbjct: 549 LSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 608

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            TY  ++    ++G    A + + +     +  D   + SL    + LER ++A  +   
Sbjct: 609 LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDR 668

Query: 304 MNKRDLK 310
           M    +K
Sbjct: 669 MVASGIK 675



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 13/232 (5%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           SV+   C+    LD GF            P  +AY  LI  LCKL ++DEA  + + M +
Sbjct: 129 SVIHGYCKA-GDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRK 187

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +TF  ++  L+   +++EA  L   M E    P L   + L+ A C  G +  
Sbjct: 188 SGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDE 247

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
            + + + +  +K+      Y++L+ G C+ GRV++   LL +MV+        TY  ++ 
Sbjct: 248 ANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVA 307

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
              R      A++   +      K +   + ++   L   +R  EA     E
Sbjct: 308 GFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE 359



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 16/250 (6%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRL 113
           C    +T   + +  N   VL+ LC+   ++DK              P   +Y+T+I  L
Sbjct: 7   CLKEMHTTGLMPDVVNCNIVLNGLCKA-RKIDKAIELFLEMPSMGCEPTIVSYNTVISGL 65

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM-EVMKEIRVSPD 172
             + K+DEA +  + M + G     I F  ++    +  + +    L+ + +K  R  PD
Sbjct: 66  ASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFR--PD 123

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  ++  YC  G+L     +L++M       DA  Y  L+   C+ GRV+EA+ L  
Sbjct: 124 VFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFE 183

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
           RM   G    Y T+  ++ AL   G   +A +       R  +   E+  SL   L    
Sbjct: 184 RMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAG 243

Query: 293 RFNEANFILK 302
           + +EAN I +
Sbjct: 244 KVDEANEIYQ 253



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 5/248 (2%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           ++P +  V     + G  PD  T   Y  L++       ++  R LL+         TA 
Sbjct: 448 MLPDACKVFEQMVQKGCVPDTIT---YTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAV 504

Query: 72  TFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+  I +    L ++++    +A++ ++G  P    + +L+       + +EA +V+  M
Sbjct: 505 TYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEM 564

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G     I +  ++ +L    R+ EA  + + M E   +PD   Y  ++  +   GN+
Sbjct: 565 TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNV 624

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            A   +L+ M +  +G D   Y++L+ G  +  RV++AF +  RMV  G      T+  +
Sbjct: 625 EAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVL 684

Query: 250 MGALLRLG 257
           M  L + G
Sbjct: 685 MHGLFKDG 692



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 86/203 (42%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y T+I  L   K+IDEA  + + +   G   + + +  ++  L +  R+E+     E M
Sbjct: 365 SYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDM 424

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 P  T Y  ++   C    L     V ++M ++    D  TY  L+ G  +A ++
Sbjct: 425 SGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKM 484

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +EA  LL  M+  G      TY  ++    +L    +A + +     R  +    +F SL
Sbjct: 485 DEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSL 544

Query: 285 GSKLIGLERFNEANFILKEMNKR 307
            S  +   R  EA  +L EM  R
Sbjct: 545 LSYYLSKGRAEEAYQVLTEMTAR 567



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 6/213 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y T+I  L   ++++EA    D        L  I++  ++  L   KR++EA  L
Sbjct: 332 PNAATYTTIIQGLYDAQRMEEAKAFFD------EALDVISYTTVIKGLADSKRIDEACEL 385

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E +K    SP++ AY  ++      G +       + M          TY  ++ G C+
Sbjct: 386 FEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCK 445

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A  + +A  +  +MV  G      TY  ++    +     +A K + V   +  +     
Sbjct: 446 AQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVT 505

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
           +GS+      L+  NEA  ++ +M +R  + G 
Sbjct: 506 YGSIVHGFCKLDMINEAKEVIAQMRERGCEPGL 538



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 72/167 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y ++I   CK   +D   ++++ M   G    A  +  ++  L +  R++EA+ L
Sbjct: 122 PDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYEL 181

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M++     D   +  L+ A    G L     + ++M E          D+L+   C+
Sbjct: 182 FERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCK 241

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           AG+V+EA  + + +V    +     Y  +M    +LG     +K ++
Sbjct: 242 AGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLL 288



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 5/213 (2%)

Query: 26  SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
           +G  PD   +A Y  L++       ++    L  +  +  C     TF  +    ++   
Sbjct: 153 AGCIPD---AAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGK 209

Query: 86  LSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           L + C     + ++G+ P     D+LI  LCK  K+DEA  +   +       S + ++ 
Sbjct: 210 LDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNS 269

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +  R+++   L+  M E    PD+  YN L+  +     L     + K +    
Sbjct: 270 LMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYG 329

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
              +A TY  ++ G   A R+EEA       +D
Sbjct: 330 CKPNAATYTTIIQGLYDAQRMEEAKAFFDEALD 362



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 83/207 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY  +I  L K  +I++ L+  + M+      +  T+  ++  L + + + +A  +
Sbjct: 396 PNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKV 455

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +    PD   Y  L+  +     +     +L  M  +     A TY ++V G C+
Sbjct: 456 FEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCK 515

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
              + EA  ++ +M + G       +  ++   L  G   +A + +     R    D  L
Sbjct: 516 LDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVIL 575

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
           + SL   L    R  EA  +   M ++
Sbjct: 576 YTSLIDLLFSTGRVPEARHVFDSMIEK 602



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 125/302 (41%), Gaps = 56/302 (18%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SLL    +K    ++  V    T  G  PD        DL+ + G    +   R++ +  
Sbjct: 543 SLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGR---VPEARHVFDSM 599

Query: 62  ARDCCFNTANTF-----NF--ITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLC 114
               C   A T+     NF  I N E +  +L      +A+   G P   AY++L+    
Sbjct: 600 IEKGCAPDALTYGTIIQNFSKIGNVEAAGEIL----ELMAKSGVG-PDCFAYNSLMDGYV 654

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM-EVMKEIRVSPDL 173
           KL+++D+A  V D M   G   +A+TF+ ++  L +  + + A+ L  E++++  V P L
Sbjct: 655 KLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTL 714

Query: 174 TAYNYLLTAYCFKGNLT----------------------------ATSGVL---KKMEEE 202
            +Y  L+      G ++                            A +G +   KK+ E+
Sbjct: 715 VSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVED 774

Query: 203 --KLGA--DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
             KLG   D + Y AL+ G   +  V+ A+ + + M+  G +    TY      +LR G+
Sbjct: 775 MVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTY-----KVLRRGF 829

Query: 259 YA 260
            A
Sbjct: 830 RA 831



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D+  P   +Y  LI  L K  ++ EA      M + G      T+  ++  L +  R+ E
Sbjct: 708 DEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPE 767

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L+E M ++ V+PD+ AY+ L+T       +     V ++M +     +  TY  L  
Sbjct: 768 AKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRR 827

Query: 217 GACRAGR 223
           G   AGR
Sbjct: 828 GFRAAGR 834


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 64/139 (46%), Gaps = 4/139 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI   CK  ++  A R+   M   G   +  TF  ++S L    RM EA  L
Sbjct: 458 PNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKL 517

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V P+   YN L+  +C +GN      +L +M E+ L  D  TY  L+ G C 
Sbjct: 518 FGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCS 577

Query: 221 AGRVEEAFVLLRRMVDDGQ 239
            GRV EA    R  ++D Q
Sbjct: 578 TGRVSEA----REFMNDLQ 592



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 1/210 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++ GF P ++A   L+  L K   I  A  +V+ + + G   S   ++ +++ + +  ++
Sbjct: 312 IEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKL 371

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA  L   M    + P+   Y+ L+ ++C +G L      L KM E  + A    Y +L
Sbjct: 372 DEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSL 431

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ G++  A  L   M+ +G       Y  ++    + G    A +      G+ I
Sbjct: 432 ISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGI 491

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +T  F +L S L    R  EAN +  EM
Sbjct: 492 SPNTYTFTALISGLCHANRMAEANKLFGEM 521



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 109/263 (41%), Gaps = 3/263 (1%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
            K   F   P+   Y+ L+N+   +  L+    L N       F    T++ + ++    
Sbjct: 344 NKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKR 403

Query: 84  SVLSDLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
             L      L ++ +   + + Y   +LI   CKL K+  A  + D M   G   + + +
Sbjct: 404 GKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIY 463

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++S   +   +  A+ L   M    +SP+   +  L++  C    +   + +  +M E
Sbjct: 464 TSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVE 523

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
             +  +  TY+ L+ G C+ G    AF LL  MV+ G      TY  ++  L   G  ++
Sbjct: 524 WNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSE 583

Query: 262 AVKFVMVCGGRDIKLDTELFGSL 284
           A +F+    G   KL+ E+ G L
Sbjct: 584 AREFMNDLQGEQQKLN-EIEGCL 605



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 2/158 (1%)

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           LCR +       P ++ Y   +  L     I++A+++ D++ EG F  + +T++ ++   
Sbjct: 630 LCREMLA-SNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEG-FLANTVTYNILIRGF 687

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +  R++EA  ++  M +  +SPD  +Y+ ++  YC +G+L     + + M    +  D 
Sbjct: 688 CKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDT 747

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             Y+ L+ G C  G + +AF L   M+  G     +TY
Sbjct: 748 VAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATY 785



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 56/120 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+ LI   CKL +I EA  V+  M + G     I++  I+    R   ++EA  L E M
Sbjct: 679 TYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESM 738

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               V+PD  AYN+L+   C  G LT    +   M    +  +  TY++L+ G C    V
Sbjct: 739 LNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSV 798



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 53/254 (20%)

Query: 78  NTENSLSVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVV 126
           NT    +++S LC    +A  +K F         P +  Y+ LI   CK      A  ++
Sbjct: 494 NTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELL 553

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEA-------WGLMEVMKEIR-VSPDLTAYNY 178
           D M E G      T+ P++S L    R+ EA        G  + + EI    P++  Y  
Sbjct: 554 DEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTA 613

Query: 179 LL-----------------------------TAYCFKGNLTATSGVLKKMEE-----EKL 204
           L+                             T  CF   LT+   + K ++      E  
Sbjct: 614 LINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGF 673

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
            A+  TY+ L+ G C+ GR++EA  +L  M+D G S    +Y+ ++    R G   +A+K
Sbjct: 674 LANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIK 733

Query: 265 FVMVCGGRDIKLDT 278
                  R +  DT
Sbjct: 734 LWESMLNRGVNPDT 747



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 90/207 (43%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+  I  LCK +++ EA+ + ++++  G      T+  ++  L + +  E    +M  
Sbjct: 251 ATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNE 310

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M E    P   A + L+     KGN+ +   ++ K+++  +      Y+AL+   C+ G+
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           ++EA  L   M   G      TY+ ++ +  + G    A+ F+       IK     + S
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 284 LGSKLIGLERFNEANFILKEMNKRDLK 310
           L S    L +   A  +  EM    LK
Sbjct: 431 LISGHCKLGKLRAAKSLFDEMIANGLK 457



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 54/128 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           F     +D LI    + ++  + L VV +M + G      T   +L+ L R ++   A  
Sbjct: 142 FSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALH 201

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + +    + PD+  Y  ++ + C   +      V+ +ME         TY+  + G C
Sbjct: 202 LFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLC 261

Query: 220 RAGRVEEA 227
           +  RV EA
Sbjct: 262 KNQRVWEA 269


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 91/209 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK+ +   A  ++  M E G   + +T+  I+    + +R+ EA  +
Sbjct: 201 PDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDI 260

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK   +SPD+  YN L+   C        S +L +M    +  D  T++ LV   C+
Sbjct: 261 FSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICK 320

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V EA  +L+ M + G      TY+ +M          +A K       +  K D   
Sbjct: 321 EGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFS 380

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L +    ++R +EA  +  EM  + L
Sbjct: 381 YNILINGYCKVKRIDEAKQLFNEMIHQGL 409



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI  LC   +  EA  +++ M         +TF+ ++  + +  ++ EA G+
Sbjct: 271 PDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGV 330

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E+ V PD+  Y+ L+  Y  +  +     +   M  +    D  +Y+ L+ G C+
Sbjct: 331 LKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCK 390

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
             R++EA  L   M+  G +    +Y  ++  L +LG   +A
Sbjct: 391 VKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREA 432



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 75/165 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  +CK  K+ EA  V+  M E G     +T+  ++   +    + EA  L
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKL 365

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      PD+ +YN L+  YC    +     +  +M  + L  +  +Y+ L+ G C+
Sbjct: 366 FDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQ 425

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G + EA  L + M  +G      TY+ ++    + GY+ +A + 
Sbjct: 426 LGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRL 470



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 106/250 (42%), Gaps = 5/250 (2%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V ++ T+ G  PD  T   Y  L+       ++   R L +      C     ++N + N
Sbjct: 330 VLKTMTEMGVEPDVVT---YSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILIN 386

Query: 79  TENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
               +  + +  +    +  +G  P   +Y+TLI  LC+L  + EA  +   M   G   
Sbjct: 387 GYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLP 446

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           +  T+  +L    +     +A+ L   M+     P+L  YN L+ A C  GNL     + 
Sbjct: 447 NLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLF 506

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
            ++  + L  +A+ Y  ++ G C+ G ++EA    R M +DG      +Y  ++   L  
Sbjct: 507 SELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHH 566

Query: 257 GYYAQAVKFV 266
              ++AV+ +
Sbjct: 567 KDESRAVQLI 576



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 106/269 (39%), Gaps = 1/269 (0%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
           +DD  +    +  L +  ++L+++   C        + I         +  L + +  L 
Sbjct: 69  HDDACSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQM-ELA 127

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
              P       LI     L+++D A  V+  + + G   + +TF  +++ L +  +  +A
Sbjct: 128 GLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQA 187

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L + M      PD+  Y  ++   C  G   A +G+LKKMEE     +  TY  ++  
Sbjct: 188 MELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDS 247

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
             +  RV EA  +   M   G S    TY  ++  L     + +A   +      +I  D
Sbjct: 248 HRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPD 307

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNK 306
              F  L   +    + +EA  +LK M +
Sbjct: 308 IVTFNVLVDTICKEGKVSEAQGVLKTMTE 336



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 27  GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT---ENSL 83
           G  PD  T   Y+ L+    +    +    LLN+           TFN + +T   E  +
Sbjct: 268 GISPDIFT---YNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKV 324

Query: 84  SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           S    + +T+  +    P    Y +L+       ++ EA ++ D M   G      +++ 
Sbjct: 325 SEAQGVLKTMTEMGVE-PDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNI 383

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +++   + KR++EA  L   M    ++P+  +YN L+   C  G+L     + K M    
Sbjct: 384 LINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNG 443

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRM 234
              +  TY  L+ G C+ G   +AF L R M
Sbjct: 444 NLPNLFTYSILLDGFCKQGYFGKAFRLFRAM 474


>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 696

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKGF P    ++TLI    KL  +  A  V+ ++ E GF    ITF  ++  L    +++
Sbjct: 461 DKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLD 520

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A+   E M E  V P+   YN L+   C  G++     +L KM+ + +  DA +++AL+
Sbjct: 521 DAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALI 580

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           L  CR  +V++A  +   MV  G      TY  ++ AL
Sbjct: 581 LSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKAL 618



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 9/199 (4%)

Query: 67  FNT-ANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALR 124
           FNT  + ++ + N  N+  VL  L      ++ GF P    + +LI  LC   ++D+A  
Sbjct: 471 FNTLISGYSKLGNVHNAKVVLKML------MEHGFMPDIITFTSLIDGLCNTHQLDDAFV 524

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
             + MAE G   +A T++ ++  L     + +A  L+  MK   V+PD  ++N L+ ++C
Sbjct: 525 CFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFC 584

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA-FVLLRRMVDDGQSVLY 243
               +     +   M    +  D+ TY++L+   C   RV +A  +L  R      +   
Sbjct: 585 RMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNN 644

Query: 244 STYAHVMGALLRLGYYAQA 262
            +Y  ++ AL ++G +++A
Sbjct: 645 QSYWPIVAALAKMGQFSEA 663



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 2/221 (0%)

Query: 86  LSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           +SDLC  L    K  G P    Y  +I  L   K   +A   +  M   G   S ++++ 
Sbjct: 379 VSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNM 438

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   +++A  +++ M++    P+L  +N L++ Y   GN+     VLK + E  
Sbjct: 439 VIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHG 498

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
              D  T+ +L+ G C   ++++AFV    M + G      TY  +M  L   G+  +A+
Sbjct: 499 FMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAI 558

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +       +  D   F +L      + + ++A  I  +M
Sbjct: 559 DLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDM 599



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   S   ++ +++   R   ++ A+   + M      PD   YN L+   C +G 
Sbjct: 179 MPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGI 238

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +     ++++ME E +  +  TY  LV G C AGRVEEAF +L +M + G +   +TY  
Sbjct: 239 VDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRT 298

Query: 249 VMGALLR 255
           ++  + R
Sbjct: 299 LVHGVFR 305



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ LI    +   +D A      M   G      T++ ++  + R   ++EA  L
Sbjct: 186 PSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRL 245

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   + P++  Y  L+  +C  G +     +L KM+E+ +     TY  LV G  R
Sbjct: 246 VRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFR 305

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
               ++A+ +L   +    S+  S    ++  L +     +AV+F      R   LD+  
Sbjct: 306 CLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTA 365

Query: 281 FG 282
           FG
Sbjct: 366 FG 367



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 10/121 (8%)

Query: 156 EAWGLM-------EV---MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           E+WG +       EV   M  + + P    YN L+ A    G +       ++M  +   
Sbjct: 161 ESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCR 220

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            D  TY++LV G CR G V+EA  L+R+M  +G      TY  ++      G   +A + 
Sbjct: 221 PDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRM 280

Query: 266 V 266
           +
Sbjct: 281 L 281



 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 51/113 (45%)

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           V  +M    L      Y+AL+  + RAG V+ A++  ++M  DG    + TY  ++  + 
Sbjct: 175 VFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVC 234

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           R G   +AV+ V    G  I+ +   +  L        R  EA  +L +M ++
Sbjct: 235 RRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEK 287


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 13/187 (6%)

Query: 62  ARDCCFNTANTFNF------ITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLC 114
           A  C  N  NT NF      +   E +  +L ++ R      KGF P  S Y  +I  LC
Sbjct: 410 AASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMR------KGFVPDTSTYTKVITFLC 463

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           + KK++++  +   M   G      T+  ++    +   +E+A    + M+ +  SP++ 
Sbjct: 464 QAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVV 523

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            Y  LL AY     L     +  +M +     +A TY AL+ G C+AG +++A  +  ++
Sbjct: 524 TYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKL 583

Query: 235 VDDGQSV 241
           +    +V
Sbjct: 584 IGTSGNV 590



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 16/255 (6%)

Query: 7   LPTKFLIPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLLNKRAR-- 63
           L +K LI Q+  +      +  +P+  T SA  D L  A   ++  E    L+       
Sbjct: 533 LKSKQLI-QAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVE 591

Query: 64  -DCCFNTANTFNFITNTENSLSVLSDLCRTL----------ARLDKGF-PRKSAYDTLIG 111
            D  F   +T     N     +++  LC+            A L  G  P +  YD LI 
Sbjct: 592 SDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALID 651

Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
             CK+ KID A  V   M + G+  S  T+  ++  + +  R++ A  ++  M     +P
Sbjct: 652 GFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNP 711

Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
           ++  Y  ++      G +     +L  MEE+    +  TY AL+ G  + G+ + +  L 
Sbjct: 712 NVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLF 771

Query: 232 RRMVDDGQSVLYSTY 246
           ++M   G +  Y TY
Sbjct: 772 KQMNSKGCAPNYVTY 786



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 67/135 (49%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y +LI R+ K  ++D A++V+  M       + +T+  ++  L++   +E+A  
Sbjct: 675 LPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALN 734

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L+ +M+E   SP++  Y  L+      G   A+  + K+M  +    +  TY  L+   C
Sbjct: 735 LLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCC 794

Query: 220 RAGRVEEAFVLLRRM 234
            AG ++EA +LL  M
Sbjct: 795 AAGLLDEAHLLLDEM 809



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 16/282 (5%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
           TK G  P   T   Y  L++    +  L+    +L++   D C     T+   T   + L
Sbjct: 670 TKCGYLPSVHT---YTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTY---TAMIDGL 723

Query: 84  SVLSDLCRTLARL----DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           S + ++ + L  L    +KG  P    Y  LI  L K  K D +L++   M   G   + 
Sbjct: 724 SKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNY 783

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T+  +++       ++EA  L++ MK       L  Y+  +    F     A+ G+L++
Sbjct: 784 VTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQG--FSKKFIASLGLLEE 841

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST---YAHVMGALLR 255
           ME  +    A  Y  L+    +AGR+E A  L + +V+   S+  ++   YA ++ AL  
Sbjct: 842 MESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCL 901

Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
                +A         + I  D  +F SL   LI + +++EA
Sbjct: 902 ASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEA 943



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 8/175 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   C    +DEA  ++D M    +      +H   +V    K+   + GL
Sbjct: 781 PNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYH--CAVQGFSKKFIASLGL 838

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART---YDALVLG 217
           +E M+     P    Y  L+ ++   G L     + K++ E     +  +   Y +L+  
Sbjct: 839 LEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQA 898

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
            C A +VEEAF L   M   G       +  ++  L+ +  + +A++   +C GR
Sbjct: 899 LCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQ---LCYGR 950



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 6/168 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEAL------RVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           P   AY+  IG +C  +++  A       +V + M      L+ +        L    + 
Sbjct: 374 PGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKF 433

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A+ +++ M      PD + Y  ++T  C    +  +  + ++M+   +  D  TY  L
Sbjct: 434 EKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTIL 493

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +   C+AG +E+A      M   G S    TY  ++ A L+     QA
Sbjct: 494 IDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQA 541



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 3/178 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + L+ R C+    DEAL  +  + + G+  SA+T++ ++ VL    ++E  + + + M  
Sbjct: 173 NVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSA 232

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
                D +   Y   A C  G     +  L  +E+E    D      ++ G   A    E
Sbjct: 233 SGFCMDRSTIGYFAQALCKVGRW---ADALNMLEKEDFNLDTVLCTQMISGLMEASLFNE 289

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           A   L RM  +       TY  ++   L+   +    + + +        +  LF SL
Sbjct: 290 AMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSL 347



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           A TY+ALV     AG+VE  F + + M   G  +  ST  +   AL ++G +A A+  + 
Sbjct: 204 AVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRWADALNML- 262

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                D  LDT L   + S L+    FNEA   L  M
Sbjct: 263 --EKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRM 297



 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 6/167 (3%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R +   P    Y TL+    K K+     R++++M   G   +   F+ ++         
Sbjct: 298 RCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDY 357

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS--GVLKKMEEEKLGADARTYD 212
             A+ L   M      P   AYN  + + C +  L       +++K+ EE L A      
Sbjct: 358 AYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNK 417

Query: 213 ALVLG----ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
                     C  G+ E+AF +L+ M+  G     STY  V+  L +
Sbjct: 418 VNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQ 464


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 106/255 (41%), Gaps = 2/255 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP    Y+ L++    +  ++  + L N   R  C  +  ++N +         + +   
Sbjct: 219 EPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKG 278

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            LA +      P    Y TL+   C+  +  +A ++++ M   G     +T+  +L  L 
Sbjct: 279 LLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLC 338

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   ++EA+ L++ M+E ++ P++  Y  L+   C  G L A   +   +  + +  D  
Sbjct: 339 KQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVV 398

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  ++ G  + G   EA  L R M   G      TY  ++   LR G  + A + +   
Sbjct: 399 TYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEM 458

Query: 270 GGRDIKLDTELFGSL 284
            GR    D+  F  L
Sbjct: 459 VGRGFSADSSTFQML 473



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 2/181 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  L K   I EA  V + M E G   +  T++ ++       +M+EA  L
Sbjct: 185 PDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKL 244

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             +M     +P + +YN L+  +C  G +    G+L +M  + L  D  TY  L+ G C+
Sbjct: 245 FNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQ 304

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR ++A  LL  M   G      TY+ V+  L + G+  +A  F ++   ++ K++  +
Sbjct: 305 DGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEA--FELLKAMQESKIEPNI 362

Query: 281 F 281
           F
Sbjct: 363 F 363



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 88/204 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK K I EA+  +  M   G   + +T+  IL       R  EA  L
Sbjct: 115 PNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSL 174

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M E  V PD   +N L+     +G +     V + M E+ +  +  TY+AL+ G C 
Sbjct: 175 FKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCS 234

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             +++EA  L   MV  G +    +Y  ++    + G   +A   +     + +  DT  
Sbjct: 235 QSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVT 294

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + +L        R  +A  +L+EM
Sbjct: 295 YSTLMKGFCQDGRPQDAQKLLEEM 318



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 5/162 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T+I  LCK+     A++++  M E G   + + +  I+  L + K + EA   
Sbjct: 80  PDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEF 139

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M    +SP++  Y+ +L  +C  G     + + K+M E  +  D  T++ LV G  +
Sbjct: 140 LSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSK 199

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G + EA  +   M++ G     +TY  +M      GY +Q+
Sbjct: 200 EGMILEAQCVFETMIEKGVEPNVNTYNALMD-----GYCSQS 236



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 74/163 (45%)

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A  V+  M + G   + +TF  +L+ L+   ++ +A  L + M ++   PD+  Y+ ++ 
Sbjct: 31  AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIIN 90

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241
             C  G+ T    +LKKMEE+    +   Y  ++   C+   + EA   L  MV+ G S 
Sbjct: 91  GLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISP 150

Query: 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
              TY+ ++     LG   +A         R++  DT  F  L
Sbjct: 151 NVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNIL 193



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 14/190 (7%)

Query: 50  DLETVR---YLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAY 106
           DL  +R   Y L       C +  + F+F      + SVL ++ +   +     P    +
Sbjct: 2   DLSNIRPDVYTLTILINCFCHSNHDHFHF------AFSVLGNMFKLGLQ-----PNHVTF 50

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
            TL+  L    KI +A+++ D M + G+    IT+  I++ L +      A  L++ M+E
Sbjct: 51  STLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEE 110

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
               P++  Y+ ++ + C    +T     L +M    +  +  TY +++ G C  GR  E
Sbjct: 111 KGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNE 170

Query: 227 AFVLLRRMVD 236
           A  L ++MV+
Sbjct: 171 ATSLFKQMVE 180


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 88/197 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + ++I  LCK  ++ E   ++D+M + G   + +TF+ ++        MEEA+ L
Sbjct: 526 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 585

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M  I + P+   Y  L+  YC  G +     V + M  + +   +  Y  ++ G  +
Sbjct: 586 LDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQ 645

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A R   A  +   M++ G +V   TY  V+G L R     +A   +      ++K D   
Sbjct: 646 ARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIIT 705

Query: 281 FGSLGSKLIGLERFNEA 297
           F  + S +  + R  EA
Sbjct: 706 FNIVISAMFKVGRRQEA 722



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 104/238 (43%), Gaps = 4/238 (1%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           + T T++ L+ + ++   +  L KG  P K  ++ LI    +   +D+A+ + + M   G
Sbjct: 395 YATATDSCLADVHNIFNLM--LTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKG 452

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
                +TF  ++S L R  R+++A      M +I V P    Y  L+   C  G L    
Sbjct: 453 MIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAK 512

Query: 194 GVLKKMEEEKLGADARTY-DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            ++ +M  + +      Y  +++   C+ GRV E   ++  MV  GQ     T+  +M  
Sbjct: 513 ELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEG 572

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              +G   +A   +       I+ +  ++G+L        R ++A  + ++M  + +K
Sbjct: 573 YCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVK 630



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 90  CRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           C  L  +++G  P+    +++I  LCK+K++D+A  +V  M + G      T+  I+  L
Sbjct: 231 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 290

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            + K M++A  ++E M E    P+   YN L+  Y   G    +  V K+M    +    
Sbjct: 291 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTV 350

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAH 248
              ++ +    + GR  EA  +   MV  G     + YST  H
Sbjct: 351 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLH 393



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 84/204 (41%), Gaps = 1/204 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI    ++ + D  L +V  + + G G    ++  I   +  G+ +++A  L
Sbjct: 174 PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGE-VDKAHCL 232

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V P +   N ++   C    +     +++KM +  +  D  TY  ++ G C+
Sbjct: 233 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 292

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +  +++A  +L +MV+ G      TY  ++      G + ++V+         +    + 
Sbjct: 293 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDN 352

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
             S    L    R NEA  I   M
Sbjct: 353 CNSFIHALFKHGRTNEAKCIFDSM 376



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 12/237 (5%)

Query: 33  PTSAYYDDLVNAAGHE------RDLETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSV 85
           P   Y+  ++N    E      +D+  +     +R     FN+    +  + N E + ++
Sbjct: 526 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 585

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L  +           P    Y TL+   CK  +ID+AL V   M   G   +++ +  IL
Sbjct: 586 LDAMASIGIE-----PNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIIL 640

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L + +R   A  +   M E   +  +  Y  +L   C        + +L+K+    + 
Sbjct: 641 HGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK 700

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            D  T++ ++    + GR +EA  L   +   G      TY+ ++  L++   Y +A
Sbjct: 701 FDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEA 757



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 50/223 (22%)

Query: 84  SVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           S++ +LC+ +  +DK              P    Y  +I  LCK K +D+A RV++ M E
Sbjct: 250 SIIKELCK-MKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 308

Query: 132 GGFGLSAITFHPI-----------------------------------LSVLTRGKRMEE 156
            G   ++IT++ +                                   +  L +  R  E
Sbjct: 309 AGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNE 368

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN--LTATSGVLKKMEEEKLGADARTYDAL 214
           A  + + M      PD+ +Y+ +L  Y    +  L     +   M  + +  +   ++ L
Sbjct: 369 AKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNIL 428

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +    R G +++A ++   M + G      T+A V+ +L R+G
Sbjct: 429 INAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIG 471



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 7/208 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           +++L+V  D+      L KG  P    Y  ++  L + ++   A ++   M E G  +S 
Sbjct: 615 DDALTVFRDM------LHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSI 668

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T+  +L  L R    +EA  L+E +  + V  D+  +N +++A    G       +   
Sbjct: 669 HTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDA 728

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           +    L  + +TY  ++    +    EEA  L   +   G +       H++  LL    
Sbjct: 729 ISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAE 788

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGS 286
            A+A  ++ + G  ++ L+      L S
Sbjct: 789 VAKASNYLSIIGENNLTLEASTISLLAS 816



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 72/161 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  ++G LC+    DEA  +++ +         ITF+ ++S + +  R +EA  L + + 
Sbjct: 671 YGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAIS 730

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y+ ++T    + +      +   +E+    +D+R  + +V        V 
Sbjct: 731 TYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVA 790

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A   L  + ++  ++  ST + +     R G Y + +K +
Sbjct: 791 KASNYLSIIGENNLTLEASTISLLASLFSREGKYREHIKLL 831


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 6/247 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P+   V      +G  PD  T     D +   G   +   V   ++ R    C  T   
Sbjct: 222 LPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVLVVQDMSSRG---CQPTTFI 278

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           ++ + +T      + D   T   ++K    P    Y+ L+   CK+KK + A RV+D M 
Sbjct: 279 YSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFENAFRVMDDME 338

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   ++ T++ IL+ L    + +EA+ +   M + R  PD   Y  ++  +C   N+ 
Sbjct: 339 GHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMIK-RCQPDSDTYTMMIKMFCENDNVE 397

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               V K M  ++      T+  L+ G C  G V +A VLL  M++ G     ST+  + 
Sbjct: 398 MALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLR 457

Query: 251 GALLRLG 257
             LL+ G
Sbjct: 458 QLLLKEG 464



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 2/180 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y T++  L K+++      VV IM   G  ++  TF  I+    R ++ +EA     +M
Sbjct: 105 SYHTVVASLAKIRQYQLMWDVVAIMRREGV-VNVETFGIIMRKYARAQKFDEAVYTFNIM 163

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           ++  V P+L A+N LL A C   N+     +  KM   +   DA+TY  L+ G  +A  +
Sbjct: 164 EKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNG-RFNPDAKTYSILLEGWGKAPNL 222

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
            +   +   M+D G      TY  ++ +L + G   +AV  V     R  +  T ++  L
Sbjct: 223 PKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVL 282



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 117/286 (40%), Gaps = 41/286 (14%)

Query: 60  KRARDCCFNTANTFNFITNTENSL---SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKL 116
           K+ R  C +T  +++ +  +   +    ++ D+   + R  +G      +  ++ +  + 
Sbjct: 93  KQKRGGCNHTIRSYHTVVASLAKIRQYQLMWDVVAIMRR--EGVVNVETFGIIMRKYARA 150

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
           +K DEA+   +IM + G   +   F+ +L  L + K + +A  + + M   R +PD   Y
Sbjct: 151 QKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNG-RFNPDAKTY 209

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           + LL  +    NL     V  +M +     D  TY  +V   C+ GRVEEA ++++ M  
Sbjct: 210 SILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVLVVQDMSS 269

Query: 237 DG---QSVLYSTYAHVMGALLRLG--------------------YYAQAVKFVMV----- 268
            G    + +YS   H  G  +R+                     Y A    F  V     
Sbjct: 270 RGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFEN 329

Query: 269 -------CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                    G  I  ++  +  + +KLI L + +EA  + + M KR
Sbjct: 330 AFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMIKR 375


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 8/237 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT+  Y+ L+N    E   ET   +           +  T+N I        ++ D+ + 
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKC---FCLMGDIQKA 431

Query: 93  LARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +   DK       P    Y+TLI   CK   ++ A+R+++IM   G    A T+  ++S 
Sbjct: 432 MVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISG 491

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            +RG ++E A  L   M E  +SP+   Y  ++  Y     +     +  KM E      
Sbjct: 492 FSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPS 551

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           ++TY+ ++ G  +   + EA     +MV  G      TY   +  L R G    A K
Sbjct: 552 SQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 6/246 (2%)

Query: 48  ERDLETVRYLLNKRARDCCFNTANTFNFIT-----NTENSLSVLSDLCRTLARLDKGFPR 102
           + D+     +LN+  RD  F  A+    +      N      V   L    ++ D G+  
Sbjct: 108 KHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTL 167

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
            S + TL+ +L K   +D A  +   M   G   S +TF+ ++++L +  R++EA  +M 
Sbjct: 168 CS-FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            +      P+   Y  L+  +C   NL     +  +M ++    ++ TY  L+ G C  G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           R+EEA  +L  MV  G      TY   + +L   G  ++AV+ +     R    + + F 
Sbjct: 287 RLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFT 346

Query: 283 SLGSKL 288
           +L S L
Sbjct: 347 ALISGL 352



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 104/254 (40%), Gaps = 20/254 (7%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT----- 79
           K G  P+  T   +  L++    +   E    L +K   D    T  T+N + N      
Sbjct: 335 KRGCVPNIQT---FTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEG 391

Query: 80  --ENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
             E + ++   +      L  G  P    Y+ +I   C +  I +A+ + D M + G   
Sbjct: 392 RFETAFTIFKWM------LSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSP 445

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           + IT++ ++    +   +  A  L+E+MK   + PD   Y  L++ +   G L   + + 
Sbjct: 446 NVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLF 505

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
             M E  +  +  TY A++ G     +V++A  L  +MV+ G      TY  ++    + 
Sbjct: 506 YGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKT 565

Query: 257 GYYAQAVKFVMVCG 270
              ++A  F   CG
Sbjct: 566 NSISEAENF---CG 576



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
            +P    Y +LI   C+   +D A  + D M + G   +++T+  +++ L    R+EEA 
Sbjct: 233 AYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAM 292

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            ++E M +  + P +  Y   L + C  G  +    +L KM++     + +T+ AL+ G 
Sbjct: 293 DMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL 352

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            R G+ E A  L  +M+ DG      TY  ++  L   G +  A
Sbjct: 353 SRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETA 396



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 9/289 (3%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +++  L  K  + ++ L+     +  A+P+  T   Y  L+       +L+    + ++ 
Sbjct: 207 TMINILCKKGRVQEAKLIMSHIFRYDAYPNAFT---YTSLILGHCRNHNLDLAFAMFDRM 263

Query: 62  ARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLK 117
            +D C   + T++ + N   +E  L    D+   + +  KG  P    Y   +  LC   
Sbjct: 264 VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQ--KGIEPTVYTYTIPLVSLCDAG 321

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
              EA+ ++  M + G   +  TF  ++S L+R  + E A GL   M    + P    YN
Sbjct: 322 CSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYN 381

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+   C +G       + K M         +TY+ ++   C  G +++A V+  +M+  
Sbjct: 382 ALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKA 441

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           G S    TY  ++    + G    A++ + +  G  +K D   +  L S
Sbjct: 442 GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELIS 490



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 5/192 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I     L K+D+AL +   M E G   S+ T++ ++S  ++   + EA   
Sbjct: 515 PNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENF 574

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P++  Y   +   C  G       +  +ME+     +  TY +L+ G C+
Sbjct: 575 CGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQ 634

Query: 221 AGRVEEA--FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            GR E+A  + LL R+   G      TY  ++  L   G   +A + V+    + ++   
Sbjct: 635 EGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSE 694

Query: 279 ELFGSLGSKLIG 290
           E++ +L   LIG
Sbjct: 695 EIYRAL---LIG 703



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 88/200 (44%), Gaps = 8/200 (4%)

Query: 69  TANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALR 124
           ++ T+N + +     NS+S   + C  + +  +G  P    Y + I  LC+  +   A +
Sbjct: 551 SSQTYNVMISGFSKTNSISEAENFCGKMVK--QGLLPNVITYTSFIDGLCRNGRTGLAFK 608

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA--WGLMEVMKEIRVSPDLTAYNYLLTA 182
           +   M +  +  +  T+  ++  L +  R E+A  + L+  +      P++  Y  L+  
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKG 668

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
            C +G       ++  M+++ L      Y AL++G C+  +VE A  +   M   G  + 
Sbjct: 669 LCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLH 728

Query: 243 YSTYAHVMGALLRLGYYAQA 262
            S Y  ++ AL +  +  +A
Sbjct: 729 LSDYKALICALCKENFIEEA 748



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 80/195 (41%), Gaps = 2/195 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEA--LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           FP    Y +LI  LC+  + ++A    ++  +   G   +  T+  ++  L    R  EA
Sbjct: 619 FPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEA 678

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M++  + P    Y  LL   C    + +   +   M+          Y AL+  
Sbjct: 679 DQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICA 738

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+   +EEA  + + M++   +     +  ++  LL+ G     +K + V   R+  L+
Sbjct: 739 LCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLN 798

Query: 278 TELFGSLGSKLIGLE 292
            + +  L  +L  L+
Sbjct: 799 FQTYVMLARELSALD 813


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 14/243 (5%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS--DLC 90
           P  + ++ LV++  + RD      LLN+ A   C      +N    +  S   L   DL 
Sbjct: 342 PNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDL- 400

Query: 91  RTLARLDKGFPRKSAYDTLIGR---------LCKLKKIDEALRVVDIMAEGGFGLSAITF 141
             LA  +K +    A   ++ +         LC + K D+A +++ +M   GF     T+
Sbjct: 401 --LALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTY 458

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             +++ L    ++E+A+ L + MK + V PD+  Y  L+ ++C  G +        +ME 
Sbjct: 459 SKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMES 518

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
                   TY AL+    +  +V +A  +  RMVD G +    TY+ ++  L + G   +
Sbjct: 519 VGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQK 578

Query: 262 AVK 264
           A +
Sbjct: 579 ACE 581



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 15/249 (6%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPT-SAYYDDLVNAAGHERDLETVRYLL---NKRARDCCFN 68
           +PQ+  +      +G  P+  T SA  D L  A   ++  E    ++   +    D  F 
Sbjct: 541 VPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFE 600

Query: 69  TANTFNFITNTENSLSVLSDLCRTLARLDKGF-----------PRKSAYDTLIGRLCKLK 117
             +T +   N     +++  LC+    +D              P    YD LI   CK+ 
Sbjct: 601 GEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVG 660

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+D A  V   M++ G+  +  T+  ++  + + +R++ A  ++  M E   +P++  Y 
Sbjct: 661 KLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYT 720

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++   C  G       +L  ME+     +  TY +L+ G  ++G+V+ +  L  +M+  
Sbjct: 721 AMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQ 780

Query: 238 GQSVLYSTY 246
           G +  Y TY
Sbjct: 781 GCAPNYVTY 789



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 13/187 (6%)

Query: 62  ARDCCFNTANTFNF------ITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLC 114
           A  C  N  NT NF      +   + +  ++  + R      KGF P  S Y  +I  LC
Sbjct: 413 ASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMR------KGFVPDTSTYSKVITFLC 466

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           +  K+++A  +   M   G      T+  ++    +   +E+A    + M+ +  SP + 
Sbjct: 467 EAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVV 526

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            Y  LL AY     +   S +  +M +     +  TY ALV G C+AG  ++A  +  +M
Sbjct: 527 TYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKM 586

Query: 235 VDDGQSV 241
           +    +V
Sbjct: 587 IGTSDNV 593



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 118/275 (42%), Gaps = 17/275 (6%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   Y  L++A   +R L+    +L++     C     T+  + +    +       + 
Sbjct: 679 PTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKL 738

Query: 93  LARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L+ ++K    P    Y +LI  L K  K+D +L++   M   G   + +T+  +++    
Sbjct: 739 LSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCA 798

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC-----FKGNLTATSGVLKKMEEEKLG 205
              ++EA  L+  MK+       T +   +  YC     F     A+ G+L+++E   + 
Sbjct: 799 AGLLDEAHSLLSEMKQ-------TYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMV 851

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS---TYAHVMGALLRLGYYAQA 262
           + A  Y  L+    +AGR+E+A  L + M++   S+  +   TY  ++ AL       +A
Sbjct: 852 SIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKA 911

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
            +       + +  +   F  L   LI + ++NEA
Sbjct: 912 FELYSEITRKGVVPELSAFICLIKGLIKVNKWNEA 946



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 16/200 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV------------DIMAEG----GFGLSAITFHPI 144
           P    Y  L+  LCK  +  +A  V             D   EG        + +T+  +
Sbjct: 558 PNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGAL 617

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L +  ++ +A  L++VM      P+   Y+ L+  +C  G L     V  +M +   
Sbjct: 618 IDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGY 677

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
                TY +L+    +  R++ A  +L +M++   +    TY  ++  L R+G   +A+K
Sbjct: 678 LPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALK 737

Query: 265 FVMVCGGRDIKLDTELFGSL 284
            + +   R    +   + SL
Sbjct: 738 LLSMMEKRGCNPNVVTYTSL 757



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 41/209 (19%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           R +   P    Y TL+    K K++    R++ +M   G   +   F+ ++      +  
Sbjct: 301 RCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDY 360

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT----------------ATSGVLKK 198
             A+ L+  M      P    YN  + + C    L                 A+S VL K
Sbjct: 361 PYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNK 420

Query: 199 MEEEKLG-------------------------ADARTYDALVLGACRAGRVEEAFVLLRR 233
           +                                D  TY  ++   C A +VE+AF+L + 
Sbjct: 421 VNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQE 480

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           M   G      TY  ++ +  ++G   QA
Sbjct: 481 MKSVGVIPDVYTYTILIDSFCKVGLIEQA 509


>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
          Length = 696

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 1/158 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKGF P    ++TLI    KL  +  A  V+ ++ E GF    ITF  ++  L    +++
Sbjct: 461 DKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLD 520

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A+   E M E  V P+   YN L+   C  G++     +L KM+ + +  DA +++AL+
Sbjct: 521 DAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALI 580

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           L  CR  +V++A  +   MV  G      TY  ++ AL
Sbjct: 581 LSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKAL 618



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 9/199 (4%)

Query: 67  FNT-ANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALR 124
           FNT  + ++ + N  N+  VL  L      ++ GF P    + +LI  LC   ++D+A  
Sbjct: 471 FNTLISGYSKLGNVHNAKVVLKML------MEHGFMPDIITFTSLIDGLCNTHQLDDAFV 524

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
             + MAE G   +A T++ ++  L     + +A  L+  MK   V+PD  ++N L+ ++C
Sbjct: 525 CFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFC 584

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA-FVLLRRMVDDGQSVLY 243
               +     +   M    +  D+ TY++L+   C   RV +A  +L  R      +   
Sbjct: 585 RMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNN 644

Query: 244 STYAHVMGALLRLGYYAQA 262
            +Y  ++ AL ++G +++A
Sbjct: 645 QSYWPIVAALAKMGQFSEA 663



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 2/221 (0%)

Query: 86  LSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           +SDLC  L    K  G P    Y  +I  L   K   +A   +  M   G   S ++++ 
Sbjct: 379 VSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNM 438

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++    +   +++A  +++ M++    P+L  +N L++ Y   GN+     VLK + E  
Sbjct: 439 VIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHG 498

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
              D  T+ +L+ G C   ++++AFV    M + G      TY  +M  L   G+  +A+
Sbjct: 499 FMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAI 558

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +       +  D   F +L      + + ++A  I  +M
Sbjct: 559 DLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDM 599



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   S   ++ +++   R   ++ A+   + M      PD   YN L+   C +G 
Sbjct: 179 MPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGI 238

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +     ++++ME E +  +  TY  LV G C AGRVEEAF +L +M + G +   +TY  
Sbjct: 239 VDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRT 298

Query: 249 VMGALLR 255
           ++  + R
Sbjct: 299 LVHGVFR 305



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + Y+ LI    +   +D A      M   G      T++ ++  + R   ++EA  L
Sbjct: 186 PSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRL 245

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+   + P++  Y  L+  +C  G +     +L KM+E+ +     TY  LV G  R
Sbjct: 246 VRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFR 305

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
               ++A+ +L   +    S+  S    ++  L +     +AV+F      R   LD+  
Sbjct: 306 CLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFAKRMSARGYLLDSTA 365

Query: 281 FG 282
           FG
Sbjct: 366 FG 367



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 18/244 (7%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P++A Y+ L+ A+     ++T      +   D C     T+N + +      ++ +  R 
Sbjct: 186 PSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRL 245

Query: 93  LARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF----HPILS 146
           + +++ +G  P    Y  L+   C   +++EA R++D M E G   S  T+    H +  
Sbjct: 246 VRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFR 305

Query: 147 VLTRGK--RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV--LKKMEEE 202
            L R K  RM   W    +  E  + P  +A + +L  YC      A   V   K+M   
Sbjct: 306 CLERDKAYRMLSDW----LGHETSLHP--SACHTML--YCLSKKDMAKEAVEFAKRMSAR 357

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
               D+  +  ++  + +   V +   LL   + +G +  +  Y  V+ +LL    +++A
Sbjct: 358 GYLLDSTAFGIVMSCSLKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKA 417

Query: 263 VKFV 266
             ++
Sbjct: 418 NHYL 421



 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 156 EAWGLMEV----------MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           E+WG + +          M  + + P    YN L+ A    G +       ++M  +   
Sbjct: 161 ESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCR 220

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            D  TY++LV G CR G V+EA  L+R+M  +G      TY  ++      G   +A + 
Sbjct: 221 PDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRM 280

Query: 266 V 266
           +
Sbjct: 281 L 281



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 50/113 (44%)

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           V  +M    L      Y+AL+  + RAG V+ A++  ++M  DG      TY  ++  + 
Sbjct: 175 VFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVC 234

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           R G   +AV+ V    G  I+ +   +  L        R  EA  +L +M ++
Sbjct: 235 RRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEK 287


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 12/226 (5%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D A  + D M   G   + +T
Sbjct: 171 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVT 230

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 231 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 290

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+ +   +    Y  ++  L + G   
Sbjct: 291 MKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSV 350

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            A K +       +K DT  +  + ++        + + +LKEM +
Sbjct: 351 DAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQR 396



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           + N     +++   C+   R+
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 244

Query: 97  DKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   + +A  ++D M+  G      T+  +
Sbjct: 245 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 304

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +  +  D  AY  L++  C +G       +L++M    L
Sbjct: 305 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 364

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             D  TY  +V   C+ G V +   LL+ M  DG +    TY  +M  
Sbjct: 365 KPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 49/116 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L  L + K  +  WG  E + E      L  +N L+  +C  G++     V   +
Sbjct: 90  TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 149

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  L     +Y+ L+ G  R G ++E F L   M+  G      TY+ ++  L +
Sbjct: 150 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 205


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 77/163 (47%)

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           +EA R+ + M   G   + +TF+ ++ VL +  ++ EA  L+EVM +  + P+L  YN L
Sbjct: 286 EEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSL 345

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +  +C  G+L +   +   M  +    D   Y  L+ G C+  +VEEA  L   M+  G+
Sbjct: 346 IEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGK 405

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
                TY  ++  L + G    A K   V     I  D  ++G
Sbjct: 406 RPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYG 448



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   CK  K++EA+++ + M + G      T+  +L+ L +G ++ +A  L
Sbjct: 372 PDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 431

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             VMK   +  DL  Y   L   C  G L     +  K++   +  D   ++ L+ G C+
Sbjct: 432 FGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCK 491

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AG++E A+ L  ++  +       TY  ++    R G   +A
Sbjct: 492 AGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKA 533



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y   +  LCK   + EA+ + + +      L    F+ ++  L +  ++E AW L E + 
Sbjct: 447 YGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLP 506

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  + PD+  YN ++  +C  G +   + + +KME+     D  TY  L+ G   + ++E
Sbjct: 507 QEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLE 566

Query: 226 EAFVLLRRMVD 236
           +   LL  MV 
Sbjct: 567 KVVELLHMMVQ 577



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 96/244 (39%), Gaps = 30/244 (12%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P +  + +    S  F   PT    +   ++A H + L       N   ++  FNT  +
Sbjct: 8   VPSASSIVKPNLSSSLFTHSPTIPSSNPHFSSAVHHKSL-------NVSPQN--FNTPIS 58

Query: 73  FNFITNTENSLSVLSDLCRT-------------LARLDKGFPRKSAYDTLIGRLCKLKKI 119
           F      +  LS+    C+T             L       P  S++  L+  L K+K  
Sbjct: 59  F------QQQLSMFLHNCKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHY 112

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            +   + + M   G      T + +L+ L    R+ E   +M  +      PD+  Y  L
Sbjct: 113 SQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTL 172

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C +  ++  + +  +M++     +A TY  L+ G CR G +  A  L + M++D  
Sbjct: 173 IKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLND-- 230

Query: 240 SVLY 243
           S LY
Sbjct: 231 SSLY 234



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 87/210 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI  LCK  K+ EA  ++++M + G   + +T++ ++        +  A  L
Sbjct: 302 PNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAREL 361

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PD+  Y  L+  YC    +     +   M +     D +TY AL+ G  +
Sbjct: 362 FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQ 421

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+V +A  L   M   G       Y   +  L + G   +A++        +IKLD E 
Sbjct: 422 GGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIEC 481

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F  L   L    +   A  + +++ + +L+
Sbjct: 482 FNCLIDGLCKAGKLETAWELFEKLPQEELQ 511


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 99/215 (46%), Gaps = 1/215 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +GF P    Y TLI  LCK+     A+R++  M +G    + + F  ++  L + +++
Sbjct: 167 IGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQV 226

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+ +   M    +SP++  YN L+   C        + ++ +M + K+  D  T + +
Sbjct: 227 TEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           V   C+ G V EA  ++  M+  G      TY  +M           AVK       +D 
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             +   + +L +    ++  ++A ++ +EM++++L
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 381



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+TLI   CK++ +D+A+ + + M+      + +T++ ++  L    R+++A  L   M
Sbjct: 352 SYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEM 411

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 PDL  Y  L    C   +L     +LK +E      D + Y  ++ G CRAG +
Sbjct: 412 VARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGEL 471

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           E+A  L   +   G      TY  ++  L + G  A+A K 
Sbjct: 472 EDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKL 512



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 86/187 (45%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P     +T++  LCK   + EA  VVD+M   G   + +T++ ++        ++ A
Sbjct: 275 KIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVA 334

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + + M       ++ +YN L+  YC   ++     + ++M  ++L  +  TY+ L+ G
Sbjct: 335 VKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHG 394

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR+++A  L   MV  GQ     TY  +   L +  +  +A+  +    G +   D
Sbjct: 395 LCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPD 454

Query: 278 TELFGSL 284
            +++ ++
Sbjct: 455 IQIYTTI 461



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 13/212 (6%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           V++ LC  L R+D  F            P  + + TLI  LC   KI EAL + D M   
Sbjct: 111 VINSLCH-LNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           GF  + +T+  +++ L +      A  L+  M++    P++  ++ L+ + C    +T  
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  +M  + +  +  TY++L+ G C+    +    L+  MVD        T   V+ A
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           L + G  A+A   V +   R ++ +   + +L
Sbjct: 290 LCKEGMVAEAHDVVDMMIHRGVEPNVVTYNAL 321



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 69/155 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LC + ++ +A+ +   M   G     +T+  +   L + + +++A  L
Sbjct: 383 PNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMAL 442

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ ++     PD+  Y  +L   C  G L     +   +  + L  +  TY+ ++ G C+
Sbjct: 443 LKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK 502

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G + EA  L   M  +G S    TY  +    LR
Sbjct: 503 QGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLR 537



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 84/201 (41%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S+++T   +      +DEAL   + M       S + F+ +L+ + + K       L   
Sbjct: 36  SSHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQ 95

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    + PD+     ++ + C    +      L K+ +     DA T+  L+ G C  G+
Sbjct: 96  MDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGK 155

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           + EA  L  +M+ +G      TY  ++  L ++G  + A++ +      + + +  +F +
Sbjct: 156 IGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFST 215

Query: 284 LGSKLIGLERFNEANFILKEM 304
           L   L    +  EA  I  EM
Sbjct: 216 LIDSLCKDRQVTEAFNIFSEM 236



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 96/232 (41%), Gaps = 3/232 (1%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL- 96
           Y+ L+N     + ++   YL  + +R        T+N + +    +  L D       + 
Sbjct: 353 YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMV 412

Query: 97  DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
            +G  P    Y TL   LCK + +D+A+ ++  +    +      +  IL  + R   +E
Sbjct: 413 ARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELE 472

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  L   +    + P++  YN ++   C +G L   S +  +M +     +  TY+ + 
Sbjct: 473 DARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLIT 532

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
            G  R         LL  M+  G SV  ST   ++G L   G   Q+VK ++
Sbjct: 533 RGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG-LDQSVKQIL 583



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 54/134 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ L+  + K K     L +   M   G      T   +++ L    R++ A+  
Sbjct: 68  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  + ++   PD T +  L+   C +G +     +  KM  E    +  TY  L+ G C+
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 221 AGRVEEAFVLLRRM 234
            G    A  LLR M
Sbjct: 188 VGNTSAAIRLLRSM 201


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/254 (20%), Positives = 115/254 (45%), Gaps = 12/254 (4%)

Query: 68  NTANTFNFITNTENSLSVLSDLCRTLARLD------------KGFPRKSAYDTLIGRLCK 115
           ++++TF+F+++++ S +   D  R    +D            K FP    ++ L   + K
Sbjct: 36  HSSSTFSFVSDSDTSRAQFLDSMRNAKSVDVALDFYHKMVTMKPFPCVKDFNLLFSIVAK 95

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
           +K    A+ ++  M+  G   +  T + +++ L R       + ++ +M +I V P +  
Sbjct: 96  MKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSIVT 155

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           +N ++   C +GN+      +  +++    +D+ T  A+  G C+ G    A   L++M 
Sbjct: 156 FNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKME 215

Query: 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295
           +   ++  + Y+ V+  L + G   +A+       G+ I+ D   +  L   L   +R+ 
Sbjct: 216 EKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWK 275

Query: 296 EANFILKEMNKRDL 309
           EA  +L  M ++ +
Sbjct: 276 EAAPLLANMMRKGI 289



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 68/163 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ + GR  K   I  A  +   M   G     +T+  I+       +M++A  +
Sbjct: 291 PDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEV 350

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M      P++  Y  L+  +C   N+      L +M    L  +  T+  L+ G C+
Sbjct: 351 FDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCK 410

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           AG+   A  L   M   GQ     T A ++  L +  ++++A+
Sbjct: 411 AGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAM 453



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 67/168 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LC   +  EA  ++  M   G      TF+ I     +   +  A  +
Sbjct: 256 PDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSI 315

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M  + +  D+  Y  ++ A+C    +     V   M  +    +  TY +L+ G C 
Sbjct: 316 FSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCE 375

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
              + +A   L  MV++G      T++ ++G + + G    A +  +V
Sbjct: 376 TKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLV 423



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 79/177 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLIG +CK  K   A  +  +M + G   +  T   IL  L +     EA  L
Sbjct: 396 PNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSL 455

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              ++++    ++  YN +L   C  G L     +   +  + +  D  TY+ ++ G C+
Sbjct: 456 FRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCK 515

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            G +++A  LL +M ++G      TY   +  LLR    +++ K++M    +  + D
Sbjct: 516 EGLLDDAEDLLMKMEENGCPPNECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQAD 572



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           +AY  ++  LCK   + EAL +   M   G      T++ ++  L    R +EA  L+  
Sbjct: 224 TAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLAN 283

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    + PD+  +N +   +   G ++    +   M    +  D  TY +++   C   +
Sbjct: 284 MMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQ 343

Query: 224 VEEAFVLLRRMVDDG---QSVLYSTYAH 248
           +++A  +   M+  G     V Y++  H
Sbjct: 344 MKDAMEVFDLMISKGCLPNIVTYTSLIH 371



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 2/235 (0%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARL-DKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN I N       ++   R +  L D G+   S     +   LCK+     AL  +  M
Sbjct: 155 TFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKM 214

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E    L    +  ++  L +   + EA  L   M    + PDL  YN L+   C     
Sbjct: 215 EEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRW 274

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
              + +L  M  + +  D +T++ +     + G +  A  +   MV  G      TY  +
Sbjct: 275 KEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSI 334

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +GA   L     A++   +   +    +   + SL       +  N+A + L EM
Sbjct: 335 IGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEM 389



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           +C   K+++AL +   ++  G  +  +T++ ++  L +   +++A  L+  M+E    P+
Sbjct: 478 MCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPN 537

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV--LGACRAGRVEEAFV 229
              YN  +     +  ++ ++  L  M+++   ADA T   L+    A +  R  E F+
Sbjct: 538 ECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQADATTTKFLINYFSANKENRALEVFL 596


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 8/237 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT+  Y+ L+N    E   ET   +           +  T+N I        ++ D+ + 
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKC---FCLMGDIQKA 431

Query: 93  LARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +   DK       P    Y+TLI   CK   ++ A+R+++IM   G    A T+  ++S 
Sbjct: 432 MVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISG 491

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            +RG ++E A  L   M E  +SP+   Y  ++  Y     +     +  KM E      
Sbjct: 492 FSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPS 551

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           ++TY+ ++ G  +   + EA     +MV  G      TY   +  L R G    A K
Sbjct: 552 SQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 6/246 (2%)

Query: 48  ERDLETVRYLLNKRARDCCFNTANTFNFIT-----NTENSLSVLSDLCRTLARLDKGFPR 102
           + D+     +LN+  RD  F  A+    +      N      V   L    ++ D G+  
Sbjct: 108 KHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTL 167

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
            S + TL+ +L K   +D A  +   M   G   S +TF+ ++++L +  R++EA  +M 
Sbjct: 168 CS-FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            +      P+   Y  L+  +C   NL     +  +M ++    ++ TY  L+ G C  G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
           R+EEA  +L  MV  G      TY   + +L   G  ++AV+ +     R    + + F 
Sbjct: 287 RLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFT 346

Query: 283 SLGSKL 288
           +L S L
Sbjct: 347 ALISGL 352



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
            +P    Y +LI   C+   +D A  + D M + G   +++T+  +++ L    R+EEA 
Sbjct: 233 AYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAM 292

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            ++E M +  + P +  Y   L + C  G  +    +L KM++     + +T+ AL+ G 
Sbjct: 293 DMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL 352

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            R G+ E A  L  +M+ DG      TY  ++  L   G +  A
Sbjct: 353 SRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETA 396



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 104/254 (40%), Gaps = 20/254 (7%)

Query: 25  KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT----- 79
           K G  P+  T   +  L++    +   E    L +K   D    T  T+N + N      
Sbjct: 335 KRGCVPNIQT---FTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEG 391

Query: 80  --ENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
             E + ++   +      L  G  P    Y+ +I   C +  I +A+ + D M + G   
Sbjct: 392 RFETAFTIFKWM------LSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSP 445

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
           + IT++ ++    +   +  A  L+E+MK   + PD   Y  L++ +   G L   + + 
Sbjct: 446 NVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLF 505

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
             M E  +  +  TY A++ G     +V++A  L  +MV+ G      TY  ++    + 
Sbjct: 506 YGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKT 565

Query: 257 GYYAQAVKFVMVCG 270
              ++A  F   CG
Sbjct: 566 NSISEAENF---CG 576



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 9/289 (3%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +++  L  K  + ++ L+     +  A+P+  T   Y  L+       +L+    + ++ 
Sbjct: 207 TMINILCKKGRVQEAKLIMSHIFRYDAYPNAFT---YTSLILGHCRNHNLDLAFAMFDRM 263

Query: 62  ARDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLK 117
            +D C   + T++ + N   +E  L    D+   + +  KG  P    Y   +  LC   
Sbjct: 264 VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQ--KGIEPTVYTYTIPLVSLCDAG 321

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
              EA+ ++  M + G   +  TF  ++S L+R  + E A GL   M    + P    YN
Sbjct: 322 CSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYN 381

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+   C +G       + K M         +TY+ ++   C  G +++A V+  +M+  
Sbjct: 382 ALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKA 441

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           G S    TY  ++    + G    A++ + +  G  +K D   +  L S
Sbjct: 442 GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELIS 490



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 5/192 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I     L K+D+AL +   M E G   S+ T++ ++S  ++   + EA   
Sbjct: 515 PNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENF 574

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  + P++  Y   +   C  G       +  +ME+     +  TY +L+ G C+
Sbjct: 575 CGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQ 634

Query: 221 AGRVEEA--FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
            GR E+A  + LL R+   G      TY  ++  L   G   +A + V+    + ++   
Sbjct: 635 EGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSE 694

Query: 279 ELFGSLGSKLIG 290
           E++ +L   LIG
Sbjct: 695 EIYRAL---LIG 703



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 88/200 (44%), Gaps = 8/200 (4%)

Query: 69  TANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALR 124
           ++ T+N + +     NS+S   + C  + +  +G  P    Y + I  LC+  +   A +
Sbjct: 551 SSQTYNVMISGFSKTNSISEAENFCGKMVK--QGLLPNVITYTSFIDGLCRNGRTGLAFK 608

Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA--WGLMEVMKEIRVSPDLTAYNYLLTA 182
           +   M +  +  +  T+  ++  L +  R E+A  + L+  +      P++  Y  L+  
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKG 668

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
            C +G       ++  M+++ L      Y AL++G C+  +VE A  +   M   G  + 
Sbjct: 669 LCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLH 728

Query: 243 YSTYAHVMGALLRLGYYAQA 262
            S Y  ++ AL +  +  +A
Sbjct: 729 LSDYKALICALCKENFIEEA 748



 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 80/195 (41%), Gaps = 2/195 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEA--LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           FP    Y +LI  LC+  + ++A    ++  +   G   +  T+  ++  L    R  EA
Sbjct: 619 FPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEA 678

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L+  M++  + P    Y  LL   C    + +   +   M+          Y AL+  
Sbjct: 679 DQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICA 738

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+   +EEA  + + M++   +     +  ++  LL+ G     +K + V   R+  L+
Sbjct: 739 LCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLN 798

Query: 278 TELFGSLGSKLIGLE 292
            + +  L  +L  L+
Sbjct: 799 FQTYVMLARELSALD 813


>gi|401398381|ref|XP_003880292.1| pentatricopeptide repeat-containing protein At5g55840, related
            [Neospora caninum Liverpool]
 gi|325114702|emb|CBZ50258.1| pentatricopeptide repeat-containing protein At5g55840, related
            [Neospora caninum Liverpool]
          Length = 1844

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 70/137 (51%)

Query: 88   DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
            +L   + R  +  P    Y T+I    + K++D+AL++   M + G  ++ +TF+ I+  
Sbjct: 1012 ELFEEMKREGQVLPNTIMYSTIIKGFAQSKQLDKALKMYAEMQQNGVAINIVTFNSIVDA 1071

Query: 148  LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
              R   M++A  L+E M    + PDL  ++ ++  YC  G +     +LK M E ++  D
Sbjct: 1072 CARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERQIKPD 1131

Query: 208  ARTYDALVLGACRAGRV 224
               Y++L+ G  + GRV
Sbjct: 1132 GVLYNSLLDGCVKTGRV 1148


>gi|255561325|ref|XP_002521673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539064|gb|EEF40660.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 341

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 132/311 (42%), Gaps = 22/311 (7%)

Query: 14  PQSVL-VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN--KRARDCCFNTA 70
           P SV  V   +T    +  +P  A Y  ++N     ++ + +  ++   K  + C  +  
Sbjct: 10  PNSVFSVWDQYTNRKDY--KPNEALYTLVINKLAQAKNFDAIEDIMQRIKLEKSCRLSNG 67

Query: 71  NTFNFIT---NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVD 127
             +N I    +    + V  D    + R    +P    ++ ++  L   +  D    + +
Sbjct: 68  FFYNVIKIYGHLAGRIKVAIDTLFDMPRGYNCWPDVKTFNLVLNLLVSARIFDVVHEIYE 127

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
                G  + A   + ++  L     +E A+ +++   + R  P++  ++ L+   C KG
Sbjct: 128 KAPILGVEIDACCLNILIKGLCENGDLEAAFYVLDEFPKQRCKPNVRTFSTLMHYLCAKG 187

Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
            +    G+L +ME E +  D  T++ L+ G  + GR+EE   LL +M   G      +Y 
Sbjct: 188 EVNQAFGLLDRMENEGIEVDTITFNILISGLRKRGRIEEGMELLVKMKLKGCEPNAGSYQ 247

Query: 248 HVMGALLRLGYYAQAVKFV--MVCGGRD---IKLDTELFGSLGSKLIGLERFNEANFILK 302
            V+  LL  G +++A  F+  MVC G     +     + G    KLIG     E + +LK
Sbjct: 248 EVLYGLLDAGKFSEAKDFMDRMVCEGNGPSFVSYKKLIDGLCKEKLIG-----EVDCVLK 302

Query: 303 EMNKRDLKMGF 313
           +M    LK GF
Sbjct: 303 QM----LKQGF 309



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 78/171 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TL+  LC   ++++A  ++D M   G  +  ITF+ ++S L +  R+EE   L
Sbjct: 171 PNVRTFSTLMHYLCAKGEVNQAFGLLDRMENEGIEVDTITFNILISGLRKRGRIEEGMEL 230

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  MK     P+  +Y  +L      G  +     + +M  E  G    +Y  L+ G C+
Sbjct: 231 LVKMKLKGCEPNAGSYQEVLYGLLDAGKFSEAKDFMDRMVCEGNGPSFVSYKKLIDGLCK 290

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
              + E   +L++M+  G       + H++G++L       ++ F  V GG
Sbjct: 291 EKLIGEVDCVLKQMLKQGFVPKMGMWKHIVGSMLSESGDCTSICFSQVIGG 341


>gi|242034189|ref|XP_002464489.1| hypothetical protein SORBIDRAFT_01g019340 [Sorghum bicolor]
 gi|241918343|gb|EER91487.1| hypothetical protein SORBIDRAFT_01g019340 [Sorghum bicolor]
          Length = 585

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 100/204 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  +AY+  I   C+   +D+A+ V+++M         +T++ +L+ +++   +EEA G+
Sbjct: 366 PDVTAYNIFINYFCRYGYLDQAIDVLEVMVNEKCFPDIVTYNTLLNAISKRGMVEEALGI 425

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              ++E         YN L+ A   KG +     +  +M  + +  D  TY +LV+G C+
Sbjct: 426 FHSIRENGCQVVRITYNTLIDALAKKGEVINAMTLFDEMTVDGISPDDVTYGSLVMGFCK 485

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
               +EA  LL +M+  G  V  +T++ ++ +L +      A + + V   R++   +  
Sbjct: 486 KNMAKEALELLNQMLALGFEVKATTFSMMIQSLCKGCNTEAAAEILRVMVSRNVNHRSAF 545

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + S+ +++    R  EA  + +E+
Sbjct: 546 YLSIVTRVAKSGRVKEAQILHQEL 569



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 1/170 (0%)

Query: 95  RLDKGFPRKSAYDTL-IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           +L  G+P      TL +  +CK      AL V+D +   G     ++++ ++SV  +   
Sbjct: 254 QLKLGWPPYEMTSTLLVDLICKKCGPMRALEVLDELGLEGCQPDVVSYNTLISVSCKAGC 313

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           ++ A  ++  +    + P+ T Y  LL + C K   +    +L  M++     D   Y+ 
Sbjct: 314 LKNAKLILTHLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDLLAHMKQANHKPDVTAYNI 373

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            +   CR G +++A  +L  MV++       TY  ++ A+ + G   +A+
Sbjct: 374 FINYFCRYGYLDQAIDVLEVMVNEKCFPDIVTYNTLLNAISKRGMVEEAL 423



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 69/158 (43%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           L  G P     + LI RLC   ++  A++V++ M   G   S ITF+ ++  +      +
Sbjct: 186 LSGGVPDTITCNMLIARLCCEGQLSSAMKVLEDMRFTGCSPSGITFNTLIRCMCSHHMYD 245

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A    +   ++   P       L+   C K        VL ++  E    D  +Y+ L+
Sbjct: 246 RAISFWKEQLKLGWPPYEMTSTLLVDLICKKCGPMRALEVLDELGLEGCQPDVVSYNTLI 305

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
             +C+AG ++ A ++L  +  +G     +TY  ++ +L
Sbjct: 306 SVSCKAGCLKNAKLILTHLSAEGLEPNGTTYCILLHSL 343



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 35/175 (20%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +K FP    Y+TL+  + K   ++EAL +   + E G  +  IT++ ++  L +   +  
Sbjct: 397 EKCFPDIVTYNTLLNAISKRGMVEEALGIFHSIRENGCQVVRITYNTLIDALAKKGEVIN 456

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG----------------------------- 187
           A  L + M    +SPD   Y  L+  +C K                              
Sbjct: 457 AMTLFDEMTVDGISPDDVTYGSLVMGFCKKNMAKEALELLNQMLALGFEVKATTFSMMIQ 516

Query: 188 ------NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
                 N  A + +L+ M    +   +  Y ++V    ++GRV+EA +L + +V 
Sbjct: 517 SLCKGCNTEAAAEILRVMVSRNVNHRSAFYLSIVTRVAKSGRVKEAQILHQELVQ 571



 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 49/118 (41%)

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
           +   Y   + R C   K+ +A RV+D M   G    +     ++  L R  +  +A  ++
Sbjct: 122 KAECYADSLRRHCNNGKLIQACRVIDEMVLHGQVPDSKCCVRLIRGLVRTGKTNKARHVL 181

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           EVM      PD    N L+   C +G L++   VL+ M          T++ L+   C
Sbjct: 182 EVMVLSGGVPDTITCNMLIARLCCEGQLSSAMKVLEDMRFTGCSPSGITFNTLIRCMC 239



 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 15/204 (7%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           Q++ V         FPD  T   Y+ L+NA      +E    + +    + C     T+N
Sbjct: 386 QAIDVLEVMVNEKCFPDIVT---YNTLLNAISKRGMVEEALGIFHSIRENGCQVVRITYN 442

Query: 75  FITN-------TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVD 127
            + +         N++++  ++      +D   P    Y +L+   CK     EAL +++
Sbjct: 443 TLIDALAKKGEVINAMTLFDEM-----TVDGISPDDVTYGSLVMGFCKKNMAKEALELLN 497

Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
            M   GF + A TF  ++  L +G   E A  ++ VM    V+     Y  ++T     G
Sbjct: 498 QMLALGFEVKATTFSMMIQSLCKGCNTEAAAEILRVMVSRNVNHRSAFYLSIVTRVAKSG 557

Query: 188 NLTATSGVLKKMEEEKLGADARTY 211
            +     + +++ + K+  +A  +
Sbjct: 558 RVKEAQILHQELVQSKVLKEASQF 581


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 110/229 (48%), Gaps = 7/229 (3%)

Query: 14  PQSV-LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           PQ   L+  S T+ G     PT   Y  L+ A   ++  +++  L++K  ++     +  
Sbjct: 87  PQEAQLIFNSLTEEG---HRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVF 143

Query: 73  FNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           FN + N  +    + +  +   ++ D+G  P  S ++TLI         +E L+++D+M+
Sbjct: 144 FNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMS 203

Query: 131 -EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E     +  TF+ ++      KR+ EAW ++  M    + PD+  YN L  AY   G  
Sbjct: 204 QEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGET 263

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           +   G++ +M+  ++  + RT   ++ G C+ G++++A   L RM + G
Sbjct: 264 SRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYG 312



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 115/287 (40%), Gaps = 13/287 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P S +++ ++NA     +++    +  K     C  T +TFN +     +  +  +  +
Sbjct: 138 KPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLK 197

Query: 92  TL---ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            L   ++ +   P    +++LI   C  K+I EA  VV  MA  G     +T++ +    
Sbjct: 198 LLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAY 257

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +      A G++  M+  RV P+      ++  YC +G +      L +M    +  + 
Sbjct: 258 AQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNL 317

Query: 209 RTYDALVLG---ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY--AQAV 263
             +++L+ G         V+EA  L+         V +ST   +M A   +G     Q +
Sbjct: 318 VIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFST---IMNAWSSVGLMDKCQEI 374

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              MV  G  I+ D   F  L    +      +A  +L  M K  ++
Sbjct: 375 FDDMVKAG--IEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQ 419



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  L +  K  EA  + + + E G   + IT+  +L+ LTR KR +    L+  +++  
Sbjct: 77  LMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNG 136

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD   +N ++ A+   GN+     + +KM++        T++ L+ G   AG  EE  
Sbjct: 137 LKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECL 196

Query: 229 VLLRRMVDD 237
            LL  M  +
Sbjct: 197 KLLDLMSQE 205



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 70/162 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + T++     +  +D+   + D M + G       F  +     R    E+A  L
Sbjct: 350 PDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESL 409

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +  V P++  +  +++ +C  G +   S V +KM E  +  + +T++ L+ G   
Sbjct: 410 LTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGE 469

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           A   ++A  LL+ M   G + + ST   V  A   LG   +A
Sbjct: 470 AKEPQKAEELLQIMEQKGVAPVKSTIQLVADAWHALGLANEA 511



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 91/239 (38%), Gaps = 5/239 (2%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           SL+R    K  I ++  V      SG  PD  T   Y+ L  A     +      ++ + 
Sbjct: 217 SLIRAWCNKKRITEAWNVVYKMAASGLQPDVVT---YNTLARAYAQNGETSRAEGMILEM 273

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKI 119
             +       T   I N       + D  R L R+      P    +++LI     +   
Sbjct: 274 QNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDT 333

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           D     + +M E G     +TF  I++  +    M++   + + M +  + PD+ A++ L
Sbjct: 334 DGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSIL 393

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
              Y   G       +L  M +  +  +   +  ++ G C AG++E A  +  +M + G
Sbjct: 394 AKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMG 452



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 1/168 (0%)

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           ++++L    + +EA  +   + E    P L  Y  LL A   +    +   ++ K+E+  
Sbjct: 77  LMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNG 136

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           L  D+  ++A++     +G V+EA  + R+M D G     ST+  ++      G   + +
Sbjct: 137 LKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECL 196

Query: 264 KFV-MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           K + ++    ++K +   F SL       +R  EA  ++ +M    L+
Sbjct: 197 KLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQ 244


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 88/197 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + ++I  LCK  ++ E   ++D+M + G   + +TF+ ++        MEEA+ L
Sbjct: 527 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 586

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M  I + P+   Y  L+  YC  G +     V + M  + +   +  Y  ++ G  +
Sbjct: 587 LDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQ 646

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A R   A  +   M++ G +V   TY  V+G L R     +A   +      ++K D   
Sbjct: 647 ARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIIT 706

Query: 281 FGSLGSKLIGLERFNEA 297
           F  + S +  + R  EA
Sbjct: 707 FNIVISAMFKVGRRQEA 723



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 93/217 (42%), Gaps = 2/217 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L KG  P K  ++ LI    +   +D+A+ + + M   G     +TF  ++S L R  R+
Sbjct: 415 LTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRL 474

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY-DA 213
           ++A      M +I V P    Y  L+   C  G L     ++ +M  + +      Y  +
Sbjct: 475 DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 534

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           ++   C+ GRV E   ++  MV  GQ     T+  +M     +G   +A   +       
Sbjct: 535 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 594

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           I+ +  ++G+L        R ++A  + ++M  + +K
Sbjct: 595 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVK 631



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 4/162 (2%)

Query: 90  CRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           C  L  +++G  P+    +++I  LCK+K++D+A  +V  M + G      T+  I+  L
Sbjct: 231 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 290

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            + K M++A  ++E M E    P+   YN L+  Y   G    +  V K+M    +    
Sbjct: 291 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTV 350

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYA 247
              ++ +    + GR  EA  +   MV  G     + YST A
Sbjct: 351 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNA 392



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 84/204 (41%), Gaps = 1/204 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI    ++ + D  L +V  + + G G    ++  I   +  G+ +++A  L
Sbjct: 174 PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGE-VDKAHCL 232

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  V P +   N ++   C    +     +++KM +  +  D  TY  ++ G C+
Sbjct: 233 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 292

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +  +++A  +L +MV+ G      TY  ++      G + ++V+         +    + 
Sbjct: 293 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDN 352

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
             S    L    R NEA  I   M
Sbjct: 353 CNSFIHALFKHGRTNEAKCIFDSM 376



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 12/237 (5%)

Query: 33  PTSAYYDDLVNAAGHE------RDLETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSV 85
           P   Y+  ++N    E      +D+  +     +R     FN+    +  + N E + ++
Sbjct: 527 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 586

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L  +           P    Y TL+   CK  +ID+AL V   M   G   +++ +  IL
Sbjct: 587 LDAMASIGIE-----PNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIIL 641

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L + +R   A  +   M E   +  +  Y  +L   C        + +L+K+    + 
Sbjct: 642 HGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK 701

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            D  T++ ++    + GR +EA  L   +   G      TY+ ++  L++   Y +A
Sbjct: 702 FDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEA 758



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 7/208 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           +++L+V  D+      L KG  P    Y  ++  L + ++   A ++   M E G  +S 
Sbjct: 616 DDALTVFRDM------LHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSI 669

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T+  +L  L R    +EA  L+E +  + V  D+  +N +++A    G       +   
Sbjct: 670 HTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDA 729

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           +    L  + +TY  ++    +    EEA  L   +   G +       H++  LL    
Sbjct: 730 ISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAE 789

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGS 286
            A+A  ++ + G  ++ L+      L S
Sbjct: 790 VAKASNYLSIIGENNLTLEASTISLLAS 817



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 72/161 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  ++G LC+    DEA  +++ +         ITF+ ++S + +  R +EA  L + + 
Sbjct: 672 YGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAIS 731

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y+ ++T    + +      +   +E+    +D+R  + +V        V 
Sbjct: 732 TYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVA 791

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A   L  + ++  ++  ST + +     R G Y + +K +
Sbjct: 792 KASNYLSIIGENNLTLEASTISLLASLFSREGKYREHIKLL 832


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 75/163 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P +  Y TLI   CK K++++ +++   M++ G   + IT+  ++       R + A  
Sbjct: 325 YPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQE 384

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +   M   R  PD+  YN LL   C  G +     + + M + ++  +  TY  ++ G C
Sbjct: 385 VFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMC 444

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G+VE+AF L   +   G      TY  ++    R G   +A
Sbjct: 445 KLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEA 487



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 24/208 (11%)

Query: 46  GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKS 104
           G E DL T   LLN     C +N           E+++++   +      L  GF P   
Sbjct: 148 GFEPDLVTFTSLLNGY---CHWN---------RIEDAIALFDQI------LGMGFKPNVV 189

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR-GKRMEEAWGLMEV 163
            Y TLI  LCK + ++ A+ + + M   G   + +T++ +++ L   G+  + AW L ++
Sbjct: 190 TYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDM 249

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           MK  R+ P++  +  L+ A+   G L     +   M +  +  D  TY +L+ G C  G 
Sbjct: 250 MKR-RIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGL 308

Query: 224 VEEA---FVLLRRMVDDGQSVLYSTYAH 248
           ++EA   F L+ R       V+Y+T  H
Sbjct: 309 LDEARQMFYLMERNGCYPNEVIYTTLIH 336



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           + ++AL +   M       S I F  +LSV+ +  R +    L E M+ + + P L   N
Sbjct: 63  QFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN 122

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++   C        S  L KM +     D  T+ +L+ G C   R+E+A  L  +++  
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM 182

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G      TY  ++  L +  +   AV+     G    + +   + +L + L  + R+ +A
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242

Query: 298 NFILKEMNKRDLK 310
            ++L++M KR ++
Sbjct: 243 AWLLRDMMKRRIE 255



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 84/211 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LC++ +  +A  ++  M +     + ITF  ++    +  ++ EA  L
Sbjct: 221 PNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKEL 280

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             VM ++ V PD+  Y  L+   C  G L     +   ME      +   Y  L+ G C+
Sbjct: 281 YNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCK 340

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           + RVE+   +   M   G      TY  ++     +G    A +       R    D   
Sbjct: 341 SKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRT 400

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
           +  L   L    +  +A  I + M KR++ +
Sbjct: 401 YNVLLDGLCCNGKVEKALMIFEYMRKREMDI 431



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 2/179 (1%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M + GF    +TF  +L+      R+E+A  L + +  +   P++  Y  L+   C   +
Sbjct: 144 MMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRH 203

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L     +  +M       +  TY+ALV G C  GR  +A  LLR M+         T+  
Sbjct: 204 LNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTA 263

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN--FILKEMN 305
           ++ A +++G   +A +   V     +  D   +GSL + L      +EA   F L E N
Sbjct: 264 LIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERN 322



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/111 (20%), Positives = 56/111 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LC   K+++AL + + M +    ++ +T+  I+  + +  ++E+A+ L
Sbjct: 396 PDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDL 455

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
              +    + P++  Y  +++ +C +G +     + KKM+E+    +   Y
Sbjct: 456 FCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 129/280 (46%), Gaps = 12/280 (4%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLN---KRARDCCFNTANTF---NFITNTENSLSV 85
           +P    ++ LV+    E +++  R +L    K+  D    T N+     F+   EN  + 
Sbjct: 271 KPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATF 330

Query: 86  LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           + +   T+AR  +G  P   +Y  +I  LCK K +DEA+ +   M       + +T++ +
Sbjct: 331 VFN---TMAR--RGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSL 385

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L +  R+ +AW L+  M       D+  Y+ LL A C    +     ++ K++++ +
Sbjct: 386 IDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGI 445

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
             +  TY  LV G C+ GR+++A  + + ++  G  +    Y  ++  L + G + +A+ 
Sbjct: 446 QPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALS 505

Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            V          D   + +L   L   ++ ++A  +L+EM
Sbjct: 506 LVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREM 545



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 6/240 (2%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           TFN + N    L  L+     LA++ K GF P      TLI  LC   K+ EAL   D +
Sbjct: 101 TFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDV 160

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              GF L  +++  +++ L +      A  ++  +  + V P++  YN ++ + C    +
Sbjct: 161 IAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLV 220

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
              S +  +M  +++  D  TY  L+ G    GR++EA  L  +M+         T+  +
Sbjct: 221 IHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNIL 280

Query: 250 MGALLRLGYYAQA--VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           +  L + G   +A  V  VM+  G D  + T  + SL      +++ N+A F+   M +R
Sbjct: 281 VDGLCKEGEMKKARNVLAVMIKQGVDSNIVT--YNSLMDGYFLVKQENKATFVFNTMARR 338



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 1/224 (0%)

Query: 87  SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
           SDLC  +  + + FP    Y TLI     + ++ EA+ + + M          TF+ ++ 
Sbjct: 224 SDLCSEMI-VKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVD 282

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
            L +   M++A  ++ VM +  V  ++  YN L+  Y         + V   M    +  
Sbjct: 283 GLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTP 342

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D ++Y  ++ G C+   V+EA  L + M     +    TY  ++  LL+ G  + A   V
Sbjct: 343 DVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLV 402

Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
                R    D   + SL   L    + ++A  ++ ++  + ++
Sbjct: 403 NEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQ 446



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 67/137 (48%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y +L+  LCK  ++D+A+ ++  + + G   +  T+  ++  L +  R+++A  + + +
Sbjct: 416 TYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDL 475

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                  D+  YN ++   C +G       ++ KME+     DA TY+ LV       + 
Sbjct: 476 LIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKN 535

Query: 225 EEAFVLLRRMVDDGQSV 241
           ++A  LLR M+  G +V
Sbjct: 536 DKAVKLLREMIVQGSAV 552



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 64/144 (44%)

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ ILS L +      A    + M+  ++ PDL  +N L+  +C  G+L     VL K+ 
Sbjct: 67  FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIF 126

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           +     D  T   L+ G C  G+V EA      ++  G  +   +Y  ++  L + G   
Sbjct: 127 KLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETR 186

Query: 261 QAVKFVMVCGGRDIKLDTELFGSL 284
            A++ +    G  ++ +  ++ ++
Sbjct: 187 AALQVLRKIDGLLVQPNVVMYNTI 210


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 80/168 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + +LI   C+  K++ +L++   +       +  TF  + + L +  R+ EA G 
Sbjct: 376 PDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGF 435

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +K   +      YN ++  +C  GN+   + +L +MEE++   D  TY  L++G C 
Sbjct: 436 LRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCM 495

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            GR+ EA  +  RM+  G +    T   ++  LL+ G   +A + + +
Sbjct: 496 KGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEAYRIMQI 543



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 25/307 (8%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE 80
           RS ++ G F +   + Y  D +N  GH  D   + +L++       FN A T+  +   E
Sbjct: 145 RSLSEMG-FHESAKAVY--DCMNIDGHSPDASVLGFLVSSATDAGKFNIARTW--VDGVE 199

Query: 81  NSLSVLSDLCRTLARLDK---------------GFPRKSAYDTLIGRLCKLKKIDEALRV 125
            SL V + L   L R ++               G     +++ LI  LC++ K+D+A  +
Sbjct: 200 FSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFEL 259

Query: 126 VDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTA 182
            + M   GFG S   IT++ +++   R   ++    L+ E++ +  +SPD+  Y  +++ 
Sbjct: 260 FNEMR--GFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISG 317

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           YC  G +   S +   M    +  +A T++ L+ G  + G +  A  +   M+  G    
Sbjct: 318 YCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPD 377

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
             T+  ++    R G   +++K       R++  +   F  L + L    R +EA   L+
Sbjct: 378 IITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLR 437

Query: 303 EMNKRDL 309
           ++  R +
Sbjct: 438 DLKWRHI 444



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 60/137 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  +  L   LCK  ++ EA   +  +           ++P++    +   ++EA  +
Sbjct: 411 PNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVI 470

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E R  PD   Y  L+  +C KG L+    +  +M       D+ T  +L+    +
Sbjct: 471 LAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLK 530

Query: 221 AGRVEEAFVLLRRMVDD 237
           AG   EA+ +++   +D
Sbjct: 531 AGMPNEAYRIMQIASED 547


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 6/247 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P+   V      +G  PD  T     D +   G   +   V   ++ R    C  T   
Sbjct: 223 LPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRG---CQPTTFI 279

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           ++ + +T      + D   T   ++K    P    Y+ L+   CK+KK D A RV+D M 
Sbjct: 280 YSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDME 339

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   ++ T++ IL+ L    + +EA+ +   M + R  PD   Y  ++  +C    + 
Sbjct: 340 GHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIK-RCKPDSDTYTMMIKMFCENDKIE 398

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               V K M  ++      T+  L+ G C  G V +A VLL  M++ G     ST+  + 
Sbjct: 399 MALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLR 458

Query: 251 GALLRLG 257
             LL+ G
Sbjct: 459 QLLLKEG 465



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 110/284 (38%), Gaps = 37/284 (13%)

Query: 60  KRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKSAYDTLIGRLCKLKK 118
           ++ R  C +T  +++ +  +   +     +   +A + K G      +  ++ +  + +K
Sbjct: 94  RQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRKEGVANVETFSIIMRKYARAQK 153

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
            DEA+   +IM   G   +   F+ +L  L + K + +A  + + M   R SPD   Y+ 
Sbjct: 154 FDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIFDKMNN-RFSPDAKTYSI 212

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           LL  +    NL     V   M       D  TY  +V   C+ GRVEEA  +++ M   G
Sbjct: 213 LLEGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRG 272

Query: 239 ---QSVLYSTYAHVMGALLRLG--------------------YYAQAVKFVMV------- 268
               + +YS   H  G  +R+                     Y A    F  V       
Sbjct: 273 CQPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFDNAF 332

Query: 269 -----CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                  G  I  ++  +  + + LI L + +EA  + + M KR
Sbjct: 333 RVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIKR 376



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 23/228 (10%)

Query: 50  DLETVRYLLNKRARDCCFNTA-NTFNFIT------NTENSLSVLSDLCRT---------L 93
           ++ET   ++ K AR   F+ A  TFN +       N     S+L  LC++          
Sbjct: 137 NVETFSIIMRKYARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIF 196

Query: 94  ARLDKGF-PRKSAYDTLI---GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            +++  F P    Y  L+   GR   L K+ E   V   M   G     +T+  ++  L 
Sbjct: 197 DKMNNRFSPDAKTYSILLEGWGRAPNLPKMRE---VYSDMLAAGCQPDIVTYGIMVDALC 253

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  R+EEA  +++ M      P    Y+ L+  Y     +         ME++ +  D  
Sbjct: 254 KTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVV 313

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            Y+ALV   C+  + + AF ++  M   G S    T+  ++  L+ LG
Sbjct: 314 VYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLG 361


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 1/183 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G+P     ++ L+ RLCK  KI+EA  +   + + G   + ++F+ +++   +   +
Sbjct: 217 LDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNL 276

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++ + L   M E RV PD+  Y+ L+   C +G L   + +  +M +  L  +  T+  L
Sbjct: 277 DQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTL 336

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C  GR +    + ++M+  G      TY  ++  L ++G   +A K V+    R +
Sbjct: 337 INGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGL 396

Query: 275 KLD 277
           K D
Sbjct: 397 KPD 399



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK+  + EA ++V  M + G      T+  ++    +   +E A  +
Sbjct: 363 PDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  +  D  A+  L++ +C +G +      L++M E  +  D  TY  ++ G C+
Sbjct: 423 RKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCK 482

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            G V+  F LL+ M  DG      TY  ++  L + G    A
Sbjct: 483 KGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNA 524



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 68/138 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y  LI   CK   ++ AL +   M + G  L  + F  ++S   R  ++ EA   
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  + PD   Y  ++  +C KG++     +LK+M+ +       TY+ L+ G C+
Sbjct: 458 LREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCK 517

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G+++ A +LL  M++ G
Sbjct: 518 QGQMKNANMLLDAMLNLG 535



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 14/209 (6%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L  RL KL     A    + + + G+      F+ ++  L +  ++ EA  L   + +  
Sbjct: 196 LFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRG 255

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + P + ++N L+  YC  GNL     + + M E ++  D  TY  L+ G C+ G++++A 
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315

Query: 229 VLLRRMVDDG---QSVLYSTY--AHVMGALLRLG--YYAQAVKFVMVCGGRDIKLDTELF 281
            L   M D G     V ++T    H +     LG   Y Q ++       + +K D   +
Sbjct: 316 KLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR-------KGVKPDVITY 368

Query: 282 GSLGSKLIGLERFNEANFILKEMNKRDLK 310
            +L + L  +    EA  ++ EM +R LK
Sbjct: 369 NTLINGLCKVGDLREAKKLVIEMTQRGLK 397



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E++L +  ++ +    LD       A+  LI   C+  ++ EA R +  M E G      
Sbjct: 417 ESALEIRKEMVKEGIELDN-----VAFTALISGFCREGQVIEAERTLREMLEAGIKPDDA 471

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  ++    +   ++  + L++ M+     P +  YN LL   C +G +   + +L  M
Sbjct: 472 TYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAM 531

Query: 200 EEEKLGADARTYDALV 215
               +  D  TY+ L+
Sbjct: 532 LNLGVVPDDITYNILL 547


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 100/206 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCKL+ + +A  +V  M + G   S  TF+ ++       ++E+ + +
Sbjct: 402 PDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTV 461

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  +  D+ ++  ++ A+C  G +     +L  M  + +  +A+ Y++++     
Sbjct: 462 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 521

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +G  E+A +L+ +M + G S    TY  ++  L R     +A + +     + ++ D   
Sbjct: 522 SGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVS 581

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           + ++ S        ++A  +L+EMNK
Sbjct: 582 YNTIISACCNKGDTDKALELLQEMNK 607



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 122/280 (43%), Gaps = 2/280 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT+  Y+ L+N     RDL     +  +           T+N + N    L +++     
Sbjct: 367 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL 426

Query: 93  LARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +  ++K    P    ++TLI       ++++   V+  M + G     I+F  ++    +
Sbjct: 427 VMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCK 486

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++ EA  +++ M    V+P+   YN ++ AY   G+      +++KM+   + A   T
Sbjct: 487 NGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVT 546

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ L+ G CR+ +++EA  L+  + + G      +Y  ++ A    G   +A++ +    
Sbjct: 547 YNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMN 606

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              I+       +L S L    R ++   + ++M  ++++
Sbjct: 607 KYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVE 646



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+++I    +    ++AL +V+ M   G   S +T++ +L  L R  +++EA  L
Sbjct: 507 PNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEEL 566

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  ++   + PD+ +YN +++A C KG+      +L++M +  +    RT   LV     
Sbjct: 567 IYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALAS 626

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           AGRV +   L ++M+        S Y  ++ A +R
Sbjct: 627 AGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVR 661



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 125/279 (44%), Gaps = 10/279 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCC----FNTANTFNFITNTENSLSVLS 87
           +P    Y+ L++       ++  R L+++ A        F  +  F+ +T T  S ++LS
Sbjct: 261 KPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLS 320

Query: 88  DLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
               +L    KG     AY    L+  LCK  K+ +A +V +++   G   + + ++ ++
Sbjct: 321 LFAESLK---KGV-MLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLI 376

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
           +   + + +  A+ + E MK   + PD   YN L+   C    +T    ++ +ME+  + 
Sbjct: 377 NGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVD 436

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
               T++ L+     AG++E+ F +L  M   G      ++  V+ A  + G   +AV  
Sbjct: 437 PSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAI 496

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +     +D+  + +++ S+    I      +A  ++++M
Sbjct: 497 LDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKM 535



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 90/210 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+ +I  L +  K  +AL+V D M + G   + IT++ ++    +G  +E  + L
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRL 251

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      P++  YN LL+  C  G +  T  ++ +M    +  D  TY  L  G  R
Sbjct: 252 RDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTR 311

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  +    L    +  G  +   T + ++  L + G  A+A +   +     +   T +
Sbjct: 312 TGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVI 371

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L +    +     A  I ++M  R ++
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIR 401



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 115/292 (39%), Gaps = 28/292 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ +++      DLE    L ++   D       T+N +         LS LCRT
Sbjct: 227 PNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVL---------LSGLCRT 277

Query: 93  LARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG---GFGLS 137
             R+D+              P    Y  L      L +  E+  ++ + AE    G  L 
Sbjct: 278 -GRMDETRALMDEMASHSMLPDGFTYSILFD---GLTRTGESQTMLSLFAESLKKGVMLG 333

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           A T   +L+ L +  ++ +A  + E++    + P    YN L+  YC   +L     + +
Sbjct: 334 AYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFE 393

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M+   +  D  TY+AL+ G C+   V +A  L+  M   G      T+  ++ A    G
Sbjct: 394 QMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAG 453

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              +    +     + IK D   FGS+        +  EA  IL +M  +D+
Sbjct: 454 QLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 505



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 2/159 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIM--AEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           P   A++ ++        +D AL ++  M  +EG     A +++ +++ L R  +  +A 
Sbjct: 155 PDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 214

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            + + M ++ V+P+   YN ++  +   G+L A   +  +M  +    +  TY+ L+ G 
Sbjct: 215 KVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGL 274

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           CR GR++E   L+  M          TY+ +   L R G
Sbjct: 275 CRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTG 313



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 35/214 (16%)

Query: 19  VTRSFTKSGAFPDE-------------PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC 65
           V ++F K+G  P+              P +  Y+ +++A     D E    L+ K     
Sbjct: 480 VVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSG 539

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKG------------FPRKSAYDTLIGRL 113
              +  T+N +         L  LCR+ +++D+              P   +Y+T+I   
Sbjct: 540 VSASIVTYNLL---------LKGLCRS-SQIDEAEELIYTLRNQGLRPDVVSYNTIISAC 589

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
           C     D+AL ++  M + G   +  T H ++S L    R+ +   L + M    V P  
Sbjct: 590 CNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSS 649

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           + Y  ++ AY    N +  + + K+M E+ +  D
Sbjct: 650 SIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 2/250 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L++      ++     + +   R  C  +  ++  + N    + ++     
Sbjct: 296 KPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMG 355

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
               + +    P    Y+TLI  LC + ++ +A+ +   M   G     +T+  +   L 
Sbjct: 356 LFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLC 415

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  R+ EA  L++V++   + PD+  Y+ ++   C  G L A   +  K+  + L  D R
Sbjct: 416 KNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVR 475

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY  ++ G C+ G + EA  L   M ++G S    TY  +    LR     +A++     
Sbjct: 476 TYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEM 535

Query: 270 GGRDIKLDTE 279
             R   +D  
Sbjct: 536 LSRGFSIDVS 545



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 83/184 (45%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P +  ++TL+  LCK   + +A  VVD+M +       +T++ ++        M + 
Sbjct: 259 KIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKT 318

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + + M      P + +Y  L+  YC    +    G+ ++M ++ L  D  TY+ L+ G
Sbjct: 319 VNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHG 378

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR+ +A  L   MV  GQ     TY  +   L +    A+A+  + V  G ++  D
Sbjct: 379 LCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPD 438

Query: 278 TELF 281
             ++
Sbjct: 439 IHIY 442



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 1/213 (0%)

Query: 99  GFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           G P  +   + LI   C L ++  A  V+  + + G+  S  TF  ++  L    ++ EA
Sbjct: 84  GIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEA 143

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L + M      PD+  Y  L+   C  GN +     L+ ME+         Y  ++  
Sbjct: 144 LQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDS 203

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+  ++ EA  L   M+  G S    TY+ ++  L  LG++ +A++       R I  D
Sbjct: 204 LCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPD 263

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              F +L   L       +A++++  M + DLK
Sbjct: 264 QLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLK 296



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 2/160 (1%)

Query: 98  KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           +GF P    Y TLI  LCK+     A+R +  M +     + + +  I+  L + +++ E
Sbjct: 153 EGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTE 212

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  L   M    +SP+   Y+ L+   C  G+      +   M   K+  D  T++ LV 
Sbjct: 213 ALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVD 272

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM-GALLR 255
             C+ G V +A  ++  M+         TY  +M G  LR
Sbjct: 273 ALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLR 312



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 60/146 (41%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  L   LCK  ++ EA+ ++ ++           +  ++  + R   +E A  
Sbjct: 401 IPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARD 460

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   +    + PD+  Y  ++   C +G L   S +  +M+E     +A TY+ +  G  
Sbjct: 461 LFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFL 520

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYST 245
           R      A  L + M+  G S+  ST
Sbjct: 521 RNNETLRAIQLFQEMLSRGFSIDVST 546


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRMEEAW 158
            P    Y+T++G LCK  + DEAL +   + E G   +A +++ +   L + G ++    
Sbjct: 385 LPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRALT 444

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            ++E++    V PD   YN L+++ C  G +    G+L  ME  +      +Y+ ++LG 
Sbjct: 445 MILEMLSN-GVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEWQPTVISYNIVLLGL 503

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           C+A R+ +A  +L  MVD+G     +TY  ++  +   G+ + AV+ 
Sbjct: 504 CKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVGYAGWRSYAVEL 550



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%)

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
           R++  M   G   + +T+  ++S L R  +  EA  ++ VMKE  ++PD   Y+ L++A+
Sbjct: 304 RLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAF 363

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C +G +    G +  M       D   Y+ ++   C+ GR +EA  + +++ + G     
Sbjct: 364 CKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNA 423

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
           S+Y  + GAL   G   +A+  ++      +  D   + SL S L      +EA  +L +
Sbjct: 424 SSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVD 483

Query: 304 MNKRDLK 310
           M + + +
Sbjct: 484 MERTEWQ 490



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 8/173 (4%)

Query: 101 PRKSAYD-------TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           P++  YD         + RLCK  K  EAL  ++ M + G+    I    ++  L   KR
Sbjct: 68  PQQQHYDFRDTHHMKALNRLCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKR 127

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
            E+A  +ME++++    PD  AYN +++ +C      A + V+ +M+      D  TY+ 
Sbjct: 128 TEKAVRVMEILEQYG-DPDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNI 186

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           L+   C  G+++ A  ++ ++++D  +    TY  ++ A +  G    A++ +
Sbjct: 187 LIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLL 239



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           G P   AY+ +I   C+  + D A RV+  M   GF    +T++ ++  L    +++ A 
Sbjct: 142 GDPDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLAL 201

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            +M+ + E   +P +  Y  L+ A    G++     +L +M    L  D  TY+ +V G 
Sbjct: 202 KVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGM 261

Query: 219 CRAGRVEEAF 228
           C+ G V+ AF
Sbjct: 262 CKRGLVDRAF 271



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 27/234 (11%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAY-YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTF 73
           ++V V R   + G  PD    AY YD L++A   E  ++     ++            + 
Sbjct: 336 EAVDVLRVMKEKGLNPD----AYCYDPLISAFCKEGKVDLAIGFVDDMI---------SA 382

Query: 74  NFITNTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDE 121
            ++ +  N  +++  LC+   R D+              P  S+Y+T+ G L        
Sbjct: 383 GWLPDIVNYNTIMGSLCKK-GRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIR 441

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           AL ++  M   G     IT++ ++S L R   ++EA GL+  M+     P + +YN +L 
Sbjct: 442 ALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEWQPTVISYNIVLL 501

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
             C    +     VL  M +     +  TY  LV G   AG    A  L + +V
Sbjct: 502 GLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVGYAGWRSYAVELAKSLV 555



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 93/261 (35%), Gaps = 80/261 (30%)

Query: 84  SVLSDLCRTLARLD-----------KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           +V+S  CR+  R D           +GF P    Y+ LIG LC   K+D AL+V+D + E
Sbjct: 151 AVISGFCRS-DRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLE 209

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL------------------ 173
                + IT+  ++        +++A  L++ M    + PD+                  
Sbjct: 210 DNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDR 269

Query: 174 --------------TA-----------------------------------YNYLLTAYC 184
                                                              Y+ L+++ C
Sbjct: 270 AFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLC 329

Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
             G       VL+ M+E+ L  DA  YD L+   C+ G+V+ A   +  M+  G      
Sbjct: 330 RDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIV 389

Query: 245 TYAHVMGALLRLGYYAQAVKF 265
            Y  +MG+L + G   +A+  
Sbjct: 390 NYNTIMGSLCKKGRADEALNI 410


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 89/198 (44%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + +I   C+  K   A  V+  + + G+     TF+ +++ L    ++ EA  L+  M E
Sbjct: 104 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVE 163

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
               P++  YN ++   C  G+ +    +L+KM+E  + AD  TY  ++   CR G ++ 
Sbjct: 164 NGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDA 223

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           A  L + M   G      TY  ++G L + G +   V+ +     R I  +   F  L  
Sbjct: 224 AISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLID 283

Query: 287 KLIGLERFNEANFILKEM 304
             +   +  EAN + KEM
Sbjct: 284 VFVKEGKLQEANELYKEM 301



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 96/204 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + ++TLI  LC   K+ EA+ +V  M E G   + +T++ I++ + +      A  L
Sbjct: 133 PDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDL 192

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E  V  D+  Y+ ++ + C  G + A   + K+ME + + +   TY++LV G C+
Sbjct: 193 LRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCK 252

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           AG+  +   LL+ M          T+  ++   ++ G   +A +       + I  +T  
Sbjct: 253 AGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTIT 312

Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
           + SL        R +EAN +L  M
Sbjct: 313 YNSLMDGYCMQNRLSEANNMLDLM 336



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 76/153 (49%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y++L+G LCK  K ++ ++++  M       + ITF+ ++ V  +  +++EA  L + M
Sbjct: 242 TYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEM 301

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               +SP+   YN L+  YC +  L+  + +L  M       D  T+ +L+ G C+  RV
Sbjct: 302 ITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRV 361

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +E   L R++   G      TY+ ++    + G
Sbjct: 362 DEGMKLFRKISKRGLVANTVTYSILVQGFCQSG 394



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 89/183 (48%), Gaps = 1/183 (0%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           +N LS  +++   + R +   P    + +LI   CK+K++DE +++   +++ G   + +
Sbjct: 323 QNRLSEANNMLDLMVR-NNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTV 381

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T+  ++    +  ++E A  L + M  + V PD+  Y  LL   C  G L     + + +
Sbjct: 382 TYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 441

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           ++ K+  D   Y  ++ G C+ G+VE+A+ L   +   G      TY  ++  L + G  
Sbjct: 442 QKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 501

Query: 260 AQA 262
           ++A
Sbjct: 502 SEA 504



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 75/154 (48%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y  L+  LC   K+++AL + + + +    L  + +  I+  + +G ++E+AW 
Sbjct: 412 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWN 471

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   +    V P++  Y  +++  C KG+L+  + +L+KMEE+    +  TY+ L+    
Sbjct: 472 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHL 531

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           R G +  +  L+  M   G S   S+   V+  L
Sbjct: 532 RDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 565



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 85/193 (44%)

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
           K+ +  L     M   G   +  T + +++   R  +   A+ ++  + ++   PD T +
Sbjct: 79  KQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTF 138

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           N L+   C +  ++    ++ +M E     +  TY+++V G C++G    A  LLR+M +
Sbjct: 139 NTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDE 198

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
                   TY+ ++ +L R G    A+        + IK     + SL   L    ++N+
Sbjct: 199 RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWND 258

Query: 297 ANFILKEMNKRDL 309
              +LK+M  R +
Sbjct: 259 GVQLLKDMTSRKI 271



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 13/211 (6%)

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGL-----------SAITFHPILSVLTRGKRMEEAWG 159
           GR+C  +++     +VDI  +    L           S + F    S +   K+      
Sbjct: 29  GRVCYGERLRSG--IVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLD 86

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M+   ++ ++   N ++  +C          VL K+ +     D  T++ L+ G C
Sbjct: 87  FCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLC 146

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
              +V EA VL+ RMV++G      TY  ++  + + G  + A+  +     R++K D  
Sbjct: 147 LESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVF 206

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            + ++   L      + A  + KEM  + +K
Sbjct: 207 TYSTIIDSLCRDGCIDAAISLFKEMETKGIK 237


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 27/231 (11%)

Query: 43  NAAGHE--RDLETVRYLLNKRARDCCFNTANTFNFITN-----------TENSL------ 83
           NA G E   DL T   L+N   R  CF  ++  +++             T +SL      
Sbjct: 38  NAEGIEISPDLYTCNILVNCFCR--CFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCL 95

Query: 84  -SVLSDLCRTLARLDK-GFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            + + D      +++K G  R    DT LI  LCK + +  AL V+  M + G   + +T
Sbjct: 96  SNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVT 155

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  +++ L +  R+ +A   +  M   +++P++  ++ L+ AY  +G L+    V K M 
Sbjct: 156 YSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMI 215

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAH 248
           +  +  +  TY +L+ G C   RV+EA  +L  M+  G +   V YST A+
Sbjct: 216 QMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLAN 266



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LC   ++DEA++++D+M   G   + +T+  + +   +  R+++   L
Sbjct: 221 PNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKL 280

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  V+ +  + N L+  Y   G +    GV   M    L  + R+Y+ ++ G   
Sbjct: 281 LDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFA 340

Query: 221 AGRVEEA---FVLLRRMVDDGQSVLYSTYAHVM 250
            G VE+A   F  +++  +D   + Y+   H M
Sbjct: 341 NGEVEKALSRFEHMQKTRNDLDIITYTIMIHGM 373



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/162 (20%), Positives = 73/162 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL     K  ++D+ ++++D M + G   + ++ + ++    +  +++ A G+
Sbjct: 256 PNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGV 315

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    + P++ +YN +L      G +       + M++ +   D  TY  ++ G C+
Sbjct: 316 FGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCK 375

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           A  V+EA+ L  ++        +  Y  ++  L R G   +A
Sbjct: 376 ACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEA 417



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 62/145 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T + +++   R  +   A   +  M ++ + PD+   + L+  +C   ++     V  +M
Sbjct: 50  TCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQM 109

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
           E+  +  D      L+   C+   V  A  +L+RM D G S    TY+ ++  L + G  
Sbjct: 110 EKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRL 169

Query: 260 AQAVKFVMVCGGRDIKLDTELFGSL 284
           A A + +     + I  +   F +L
Sbjct: 170 ADAERRLHEMDSKKINPNVITFSAL 194



 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 137 SAITFHPILSVLTRGKRME---EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
           S + F+ +L+ + + +  +     W  +E  + I +SPDL   N L+  +C     ++  
Sbjct: 9   SIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSAL 68

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             L KM +  +  D  T  +LV G C +  +++A  +  +M
Sbjct: 69  SYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQM 109



 Score = 37.7 bits (86), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 13/193 (6%)

Query: 47  HERDLETVRYLLNKRARDCCFNT------ANTFNFITNTENSLSVLSDLCRTLARLDKGF 100
           H R  E ++ L    ++ C  N       AN F   +  ++ + +L D+ +      +G 
Sbjct: 236 HNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQ------RGV 289

Query: 101 PRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
              + + +TLI    +  KID AL V   M   G   +  +++ +L+ L     +E+A  
Sbjct: 290 AANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALS 349

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             E M++ R   D+  Y  ++   C    +     +  K++ +++  D + Y  ++    
Sbjct: 350 RFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELN 409

Query: 220 RAGRVEEAFVLLR 232
           RAG   EA  L R
Sbjct: 410 RAGMRTEADALNR 422


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 99/215 (46%), Gaps = 1/215 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           + +GF P    Y TLI  LCK+     A+R++  M +G    + + F  ++  L + +++
Sbjct: 167 IGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQV 226

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA+ +   M    +SP++  YN L+   C        + ++ +M + K+  D  T + +
Sbjct: 227 TEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           V   C+ G V EA  ++  M+  G      TY  +M           AVK       +D 
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             +   + +L +    ++  ++A ++ +EM++++L
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 381



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+TLI   CK++ +D+A+ + + M+      + +T++ ++  L    R+++A  L   M
Sbjct: 352 SYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEM 411

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
                 PDL  Y  L    C   +L     +LK +E      D + Y  ++ G CRAG +
Sbjct: 412 VARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGEL 471

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           E+A  L   +   G      TY  ++  L + G  A+A K 
Sbjct: 472 EDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKL 512



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 86/187 (45%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           K  P     +T++  LCK   + EA  VVD+M   G   + +T++ ++        ++ A
Sbjct: 275 KIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVA 334

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             + + M       ++ +YN L+  YC   ++     + ++M  ++L  +  TY+ L+ G
Sbjct: 335 VKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHG 394

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GR+++A  L   MV  GQ     TY  +   L +  +  +A+  +    G +   D
Sbjct: 395 LCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPD 454

Query: 278 TELFGSL 284
            +++ ++
Sbjct: 455 IQIYTTI 461



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 13/212 (6%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           V++ LC  L R+D  F            P  + + TLI  LC   KI EAL + D M   
Sbjct: 111 VINSLCH-LNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           GF  + +T+  +++ L +      A  L+  M++    P++  ++ L+ + C    +T  
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +  +M  + +  +  TY++L+ G C+    +    L+  MVD        T   V+ A
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           L + G  A+A   V +   R ++ +   + +L
Sbjct: 290 LCKEGMVAEAHDVVDMMIHRGVEPNVVTYNAL 321



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 69/155 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LC + ++ +A+ +   M   G     +T+  +   L + + +++A  L
Sbjct: 383 PNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMAL 442

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ ++     PD+  Y  +L   C  G L     +   +  + L  +  TY+ ++ G C+
Sbjct: 443 LKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK 502

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            G + EA  L   M  +G S    TY  +    LR
Sbjct: 503 QGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLR 537



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 84/201 (41%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S+++T   +      +DEAL   + M       S + F+ +L+ + + K       L   
Sbjct: 36  SSHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQ 95

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M    + PD+     ++ + C    +      L K+ +     DA T+  L+ G C  G+
Sbjct: 96  MDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGK 155

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
           + EA  L  +M+ +G      TY  ++  L ++G  + A++ +      + + +  +F +
Sbjct: 156 IGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFST 215

Query: 284 LGSKLIGLERFNEANFILKEM 304
           L   L    +  EA  I  EM
Sbjct: 216 LIDSLCKDRQVTEAFNIFSEM 236



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 96/232 (41%), Gaps = 3/232 (1%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL- 96
           Y+ L+N     + ++   YL  + +R        T+N + +    +  L D       + 
Sbjct: 353 YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMV 412

Query: 97  DKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
            +G  P    Y TL   LCK + +D+A+ ++  +    +      +  IL  + R   +E
Sbjct: 413 ARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELE 472

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A  L   +    + P++  YN ++   C +G L   S +  +M +     +  TY+ + 
Sbjct: 473 DARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLIT 532

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
            G  R         LL  M+  G SV  ST   ++G L   G   Q+VK ++
Sbjct: 533 RGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG-LDQSVKQIL 583



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 3/168 (1%)

Query: 68  NTANTFNFITNTENSL-SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126
           ++ NTF+      N+L   LS   R L +  +  P    ++ L+  + K K     L + 
Sbjct: 36  SSHNTFHSKPLHFNTLDEALSTFNRMLHK--QPPPSTVDFNRLLTSIAKTKHHSTLLSLS 93

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   G      T   +++ L    R++ A+  +  + ++   PD T +  L+   C +
Sbjct: 94  RQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVE 153

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           G +     +  KM  E    +  TY  L+ G C+ G    A  LLR M
Sbjct: 154 GKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM 201


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 42/253 (16%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           ++ L+ +   K    PDE T   Y+ L+N    E  +   RY+ N   R          N
Sbjct: 313 RAFLLLKRMRKDDLTPDECT---YNTLINGFFREGKINHARYVFNHMLRQ---------N 360

Query: 75  FITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
            +                        P  + Y T+I   C+ ++ID+AL ++  M   G 
Sbjct: 361 LV------------------------PSVATYTTMIDGYCRNRRIDKALSILSEMQITGV 396

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
             S +T+  +L+   +   +  A  LME +K   ++ + T    L+  +C  G ++    
Sbjct: 397 MPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQ 456

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMG 251
           +LK M E+ +  D  TY AL+ G CR  ++ E   +L RM   G     VLY+T   ++ 
Sbjct: 457 ILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTT---LIC 513

Query: 252 ALLRLGYYAQAVK 264
              + GY  +A+K
Sbjct: 514 YYCKAGYVKEALK 526



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 108/271 (39%), Gaps = 39/271 (14%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALR-VVDI 128
           T++ + N    ++ + +    L+R+ K    P    Y TLI   CK   + EAL+  VDI
Sbjct: 472 TYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDI 531

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
              G    + +  + +L    R   + EA    + M  + +S D  ++N ++ +YC +GN
Sbjct: 532 YRRGLVA-NPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGN 590

Query: 189 LTATSGVLKKME-----------------------------------EEKLGADARTYDA 213
           +     V   M                                    +     D +T++A
Sbjct: 591 IVGAFSVYDDMVRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNA 650

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
           L+LG CR G ++EA  L  +M+ +       TY  ++    R G    A+  + +   + 
Sbjct: 651 LLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKG 710

Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           +  DT  +  L + LI   +   A+++  E+
Sbjct: 711 VVPDTVAYTCLLNGLINEGQVKAASYVFHEI 741



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 98/214 (45%)

Query: 96   LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
            L+  FP +  +D LI    +  K+  AL+V + M       S+ TF  +++ L R   ++
Sbjct: 849  LEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLD 908

Query: 156  EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
             +  ++  M ++ + P+ T Y  L+ A C  G +     + ++M+   +        +++
Sbjct: 909  HSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSII 968

Query: 216  LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
             G CR G++EEA ++   M+  G     +T+  +M +L +    A A+    +     ++
Sbjct: 969  RGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLR 1028

Query: 276  LDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +D   +  L + L   +  ++A  +  EM  + L
Sbjct: 1029 VDVVSYNVLITGLCKDKHISDALDLYGEMKSKGL 1062



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 86/199 (43%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T++    K  +   AL V++ M          T++ ++  L R KR   A+ L++ M+
Sbjct: 263 YNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMR 322

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  ++PD   YN L+  +  +G +     V   M  + L     TY  ++ G CR  R++
Sbjct: 323 KDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRID 382

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  +L  M   G      TY+ ++    ++     A+  +     R I ++  +   L 
Sbjct: 383 KALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILI 442

Query: 286 SKLIGLERFNEANFILKEM 304
                +   ++A  ILK M
Sbjct: 443 DGFCQVGEISKAKQILKSM 461



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 6/230 (2%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDLCRTLA 94
           Y+ L+N     R++ T++ +++   ++  +  + ++N + +        S    L + + 
Sbjct: 754 YNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMV 813

Query: 95  RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           R  KG  P    Y  LI  L +   ID A++ ++ M   G     + F  +++  +   +
Sbjct: 814 R--KGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSK 871

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           M  A  +   MK + +SP    ++ ++     KG L  +  VL +M +  L  +   Y A
Sbjct: 872 MHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIA 931

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           LV   CR G ++ AF L   M   G        + ++  L R G   +AV
Sbjct: 932 LVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAV 981



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 98/239 (41%), Gaps = 17/239 (7%)

Query: 27   GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------T 79
            G FPD      +D L+ A   +  +     + N         ++ TF+ + N        
Sbjct: 851  GIFPDR---LVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYL 907

Query: 80   ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
            ++S  VL ++      L  G  P  + Y  L+   C++ +ID A R+ + M   G   + 
Sbjct: 908  DHSHKVLHEM------LQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAE 961

Query: 139  ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            +    I+  L R  ++EEA  +   M    + P +  +  L+ + C +  +     + + 
Sbjct: 962  VAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRL 1021

Query: 199  MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            ME  +L  D  +Y+ L+ G C+   + +A  L   M   G     +TY  + GA+   G
Sbjct: 1022 MELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMYSTG 1080



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 78  NTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           N   + SV  D+ R       G+ P    Y  L+  LC+   + +A + +  + +  F +
Sbjct: 590 NIVGAFSVYDDMVRY------GYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAI 643

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
              TF+ +L  + R   ++EA  L E M +    PD+  Y  LL+ +C KG +     +L
Sbjct: 644 DEKTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVIL 703

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
           + M E+ +  D   Y  L+ G    G+V+ A  +   ++
Sbjct: 704 QMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEII 742



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 13/173 (7%)

Query: 78   NTENSLSVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRV 125
            N  + +++++  CR +  +D+ F            P + A  ++I  LC+  K++EA+ V
Sbjct: 925  NHTHYIALVNAKCR-VGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIV 983

Query: 126  VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
               M   G   +  TF  ++  L +  ++ +A  L  +M+  R+  D+ +YN L+T  C 
Sbjct: 984  FSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSYNVLITGLCK 1043

Query: 186  KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
              +++    +  +M+ + L  +  TY  L       GRV+    LL  + + G
Sbjct: 1044 DKHISDALDLYGEMKSKGLWPNITTYITLTGAMYSTGRVQNGEELLEDIEERG 1096



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 2/180 (1%)

Query: 88  DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS- 146
           DLC  + + +   P    Y  L+   C+  KI  AL ++ +M E G     + +  +L+ 
Sbjct: 666 DLCEKMIK-NNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCLLNG 724

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           ++  G+    ++   E++ +  +  D  AYN L+  Y    N+     ++  M + ++  
Sbjct: 725 LINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMSDMYQNEVYP 784

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           ++ +Y+ L+ G  + G+  ++  L + MV  G      TY  ++  L   G    AVKF+
Sbjct: 785 NSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFL 844



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/254 (18%), Positives = 106/254 (41%), Gaps = 12/254 (4%)

Query: 60  KRARDCCFNTANTFNFITNT-------ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGR 112
           ++ + C  + + T+N I +        + +L VL D+ R   + D        Y+ +I +
Sbjct: 250 QKMKSCHISNSVTYNTILHWYVKKGRFKAALCVLEDMERDSVQADV-----YTYNIMIDK 304

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC++K+   A  ++  M +        T++ +++   R  ++  A  +   M    + P 
Sbjct: 305 LCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVPS 364

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  ++  YC    +     +L +M+   +     TY AL+ G C+   +  A  L+ 
Sbjct: 365 VATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAIYLME 424

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            +   G ++  +    ++    ++G  ++A + +       I  D   + +L + +  + 
Sbjct: 425 DLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMA 484

Query: 293 RFNEANFILKEMNK 306
           + +E   IL  M K
Sbjct: 485 KMHETKEILSRMQK 498



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/256 (17%), Positives = 114/256 (44%), Gaps = 6/256 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR-ARDCCFNTAN 71
           I  ++++ +   + G  PD   +  Y  L+N   +E  ++   Y+ ++   ++  +    
Sbjct: 696 ILPALVILQMMLEKGVVPD---TVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCI 752

Query: 72  TFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
            +N + N       ++ + R ++ +  ++ +P  ++Y+ L+    K  +  ++L +   M
Sbjct: 753 AYNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYM 812

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G     +T+  ++  L+    ++ A   +E M    + PD   ++ L+TA+  K  +
Sbjct: 813 VRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKM 872

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                V   M+   +   ++T+ A++ G  R G ++ +  +L  M+  G    ++ Y  +
Sbjct: 873 HNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIAL 932

Query: 250 MGALLRLGYYAQAVKF 265
           + A  R+G   +A + 
Sbjct: 933 VNAKCRVGEIDRAFRL 948


>gi|297820862|ref|XP_002878314.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324152|gb|EFH54573.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 475

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 115/269 (42%), Gaps = 7/269 (2%)

Query: 12  LIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN 71
           L  Q+V+    F KS  F   P    Y+ ++N+    +  + + ++  +   D       
Sbjct: 201 LAKQAVV---QFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYEQMLEDGFSPDVL 257

Query: 72  TFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           T+N +  T   L  +    R    +  D   P    Y+ L+  L K  K   AL  ++ M
Sbjct: 258 TYNILLWTNYRLGKMDRFDRLFDEMARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHM 317

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            E G  LS + +  ++  L+R   +E     ++ M +    PD+  Y  ++T Y   G L
Sbjct: 318 KEVGIDLSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGEL 377

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                + K+M  E    +  TY++++ G C AG   EA  LL+ M   G +  +  Y+ +
Sbjct: 378 EKAKEMFKEMTVEGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTL 437

Query: 250 MGALLRLGYYAQAVKFV--MVCGGRDIKL 276
           +  L + G  ++A K +  MV  G  + L
Sbjct: 438 VSYLRKAGKLSEARKVIRDMVKKGHYVHL 466



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 1/213 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ GF P    Y+ L+    +L K+D   R+ D MA  G      T++ +L +L +G + 
Sbjct: 248 LEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGLSPDFYTYNILLHILGKGNKP 307

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
             A   +  MKE+ +   +  Y  L+      GNL A    L +M +     D   Y  +
Sbjct: 308 LAALTTLNHMKEVGIDLSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVM 367

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G   +G +E+A  + + M  +GQ     TY  ++  L   G + +A   +     R  
Sbjct: 368 ITGYVVSGELEKAKEMFKEMTVEGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGC 427

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
             +  ++ +L S L    + +EA  ++++M K+
Sbjct: 428 NPNFVVYSTLVSYLRKAGKLSEARKVIRDMVKK 460



 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 3/151 (1%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           ++Y  L+    +  +     R+VD M + GF  +A TF+ ++         ++A      
Sbjct: 152 NSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMK 211

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
            K     P   +YN +L +            V ++M E+    D  TY+ L+    R G+
Sbjct: 212 SKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYEQMLEDGFSPDVLTYNILLWTNYRLGK 271

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYA---HVMG 251
           ++    L   M  DG S  + TY    H++G
Sbjct: 272 MDRFDRLFDEMARDGLSPDFYTYNILLHILG 302


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 71/146 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  YD LI  LCK+ K+DEA  V   M+E GF  +  T+  ++    + KR + A  +
Sbjct: 672 PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 731

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E   +P++  Y  ++   C  G       +++ MEE+    +  TY A++ G   
Sbjct: 732 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGM 791

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
            G++E    LL RM   G +  Y TY
Sbjct: 792 IGKIETCLELLERMGSKGVAPNYVTY 817



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E + SV+ ++      + +GF P  S Y  ++  LC   K++ A  + + M  GG     
Sbjct: 465 EKAFSVIREM------IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 518

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T+  ++    +   +E+A      M+E+  +P++  Y  L+ AY     ++  + + + 
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           M  E    +  TY AL+ G C+AG+VE+A  +  RM
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 614



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 2/206 (0%)

Query: 31  DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90
           + P    Y  L++       +E  R LL+  + + C      ++ + +    +  L +  
Sbjct: 635 ERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 694

Query: 91  RTLARL-DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
                + + GFP     Y +LI R  K+K+ D A +V+  M E     + + +  ++  L
Sbjct: 695 EVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGL 754

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +  + +EA+ LM++M+E    P++  Y  ++  +   G +     +L++M  + +  + 
Sbjct: 755 CKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNY 814

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRM 234
            TY  L+   C+ G ++ A  LL  M
Sbjct: 815 VTYRVLIDHCCKNGALDVAHNLLEEM 840



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 2/170 (1%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC   K ++A  V+  M   GF     T+  +L+ L    +ME A+ L E MK   +  D
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  ++ ++C  G +        +M E     +  TY AL+    +A +V  A  L  
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVMVCGGRDIKLDTELF 281
            M+ +G      TY+ ++    + G   +A + F  +CG +D+  D +++
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVP-DVDMY 626



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   CK  +++EA +++D M+  G   + I +  ++  L +  +++EA  +
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E      L  Y+ L+  Y         S VL KM E     +   Y  ++ G C+
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G+ +EA+ L++ M + G      TY  ++     +G
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIG 793



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 46/301 (15%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTL 93
            S++   L +A  +E+    +R ++ +              FI +T     VL+ LC   
Sbjct: 451 VSSFTRCLCSAGKYEKAFSVIREMIGQ-------------GFIPDTSTYSKVLNYLCNA- 496

Query: 94  ARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           ++++  F                 Y  ++   CK   I++A +  + M E G   + +T+
Sbjct: 497 SKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 556

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++    + K++  A  L E M      P++  Y+ L+  +C  G +     + ++M  
Sbjct: 557 TALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCG 616

Query: 202 EKLGADAR----------------TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            K   D                  TY AL+ G C++ RVEEA  LL  M  +G       
Sbjct: 617 SKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIV 676

Query: 246 YAHVMGALLRLGYY--AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
           Y  ++  L ++G    AQ VK  M   G    L T  + SL  +   ++R + A+ +L +
Sbjct: 677 YDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT--YSSLIDRYFKVKRQDLASKVLSK 734

Query: 304 M 304
           M
Sbjct: 735 M 735



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 8/231 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+    +++ L   + +LN    + C+ +   FN + +   +    S   + 
Sbjct: 335 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 394

Query: 93  LARLDK--GFPRKSAYDTLIGRLCKLKK------IDEALRVVDIMAEGGFGLSAITFHPI 144
           L ++ K    P    Y+ LIG +C  K       +D A +    M   G  L+ I     
Sbjct: 395 LKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSF 454

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
              L    + E+A+ ++  M      PD + Y+ +L   C    +     + ++M+   L
Sbjct: 455 TRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGL 514

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            AD  TY  +V   C+AG +E+A      M + G +    TY  ++ A L+
Sbjct: 515 VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LCK+ K DEA +++ +M E G   + +T+  ++       ++E    L
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    V+P+   Y  L+   C  G L     +L++M++         Y  ++ G  +
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK 861

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
                E+  LL  +  D  +   S Y  ++  L++
Sbjct: 862 --EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIK 894



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 41/203 (20%)

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           TL   +   P    Y  LI  LC+    +EA+  ++ M       + +T+  +L      
Sbjct: 291 TLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK 350

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM------------ 199
           K++     ++ +M      P    +N L+ AYC  G+ +    +LKKM            
Sbjct: 351 KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVY 410

Query: 200 ---------EEEKLGAD-----ARTYDALVLGA---------------CRAGRVEEAFVL 230
                    +++ L  D      + Y  ++                  C AG+ E+AF +
Sbjct: 411 NILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSV 470

Query: 231 LRRMVDDGQSVLYSTYAHVMGAL 253
           +R M+  G     STY+ V+  L
Sbjct: 471 IREMIGQGFIPDTSTYSKVLNYL 493



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 9/176 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   CK   +D A  +++ M +  +      +  ++      K   E+ GL
Sbjct: 812 PNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGL 869

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME--EEKLGADARTYDALVLGA 218
           ++ + +   +P L+ Y  L+        L     +L+++      L   + TY++L+   
Sbjct: 870 LDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESL 929

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV-----MVC 269
           C A +VE AF L   M   G      ++  ++  L R    ++A+  +     MVC
Sbjct: 930 CLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMVC 985


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 71/146 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  YD LI  LCK+ K+DEA  V   M+E GF  +  T+  ++    + KR + A  +
Sbjct: 672 PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 731

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E   +P++  Y  ++   C  G       +++ MEE+    +  TY A++ G   
Sbjct: 732 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGM 791

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
            G++E    LL RM   G +  Y TY
Sbjct: 792 IGKIETCLELLERMGSKGVAPNYVTY 817



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E + SV+ ++      + +GF P  S Y  ++  LC   K++ A  + + M  GG     
Sbjct: 465 EKAFSVIREM------IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 518

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T+  ++    +   +E+A      M+E+  +P++  Y  L+ AY     ++  + + + 
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           M  E    +  TY AL+ G C+AG+VE+A  +  RM
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 614



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 2/206 (0%)

Query: 31  DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90
           + P    Y  L++       +E  R LL+  + + C      ++ + +    +  L +  
Sbjct: 635 ERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 694

Query: 91  RTLARL-DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
                + + GFP     Y +LI R  K+K+ D A +V+  M E     + + +  ++  L
Sbjct: 695 EVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGL 754

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +  + +EA+ LM++M+E    P++  Y  ++  +   G +     +L++M  + +  + 
Sbjct: 755 CKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNY 814

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRM 234
            TY  L+   C+ G ++ A  LL  M
Sbjct: 815 VTYRVLIDHCCKNGALDVAHNLLEEM 840



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 2/170 (1%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC   K ++A  V+  M   GF     T+  +L+ L    +ME A+ L E MK   +  D
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  ++ ++C  G +        +M E     +  TY AL+    +A +V  A  L  
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVMVCGGRDIKLDTELF 281
            M+ +G      TY+ ++    + G   +A + F  +CG +D+  D +++
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVP-DVDMY 626



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   CK  +++EA +++D M+  G   + I +  ++  L +  +++EA  +
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E      L  Y+ L+  Y         S VL KM E     +   Y  ++ G C+
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G+ +EA+ L++ M + G      TY  ++     +G
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIG 793



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 20/217 (9%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  ++   CK   I++A +  + M E G   + +T+  ++    + K++  A  L E M 
Sbjct: 521 YTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETML 580

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR---------------- 209
                P++  Y+ L+  +C  G +     + ++M   K   D                  
Sbjct: 581 SEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVV 640

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY--AQAVKFVM 267
           TY AL+ G C++ RVEEA  LL  M  +G       Y  ++  L ++G    AQ VK  M
Sbjct: 641 TYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEM 700

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              G    L T  + SL  +   ++R + A+ +L +M
Sbjct: 701 SEHGFPATLYT--YSSLIDRYFKVKRQDLASKVLSKM 735



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 8/231 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+    +++ L   + +LN    + C+ +   FN + +   +    S   + 
Sbjct: 335 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 394

Query: 93  LARLDK--GFPRKSAYDTLIGRLCKLKK------IDEALRVVDIMAEGGFGLSAITFHPI 144
           L ++ K    P    Y+ LIG +C  K       +D A +    M   G  L+ I     
Sbjct: 395 LKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSF 454

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
              L    + E+A+ ++  M      PD + Y+ +L   C    +     + ++M+   L
Sbjct: 455 TRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGL 514

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            AD  TY  +V   C+AG +E+A      M + G +    TY  ++ A L+
Sbjct: 515 VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LCK+ K DEA +++ +M E G   + +T+  ++       ++E    L
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    V+P+   Y  L+   C  G L     +L++M++         Y  ++ G  +
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK 861

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
                E+  LL  +  D  +   S Y  ++  L++
Sbjct: 862 --EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIK 894



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 16/166 (9%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI    K KK+  A  + + M   G   + +T+  ++    +  ++E+A  +
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQI 610

Query: 161 MEVMKEIRVSPD----------------LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
            E M   +  PD                +  Y  LL  +C    +     +L  M  E  
Sbjct: 611 FERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGC 670

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
             +   YDAL+ G C+ G+++EA  +   M + G      TY+ ++
Sbjct: 671 EPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 716



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 41/203 (20%)

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           TL   +   P    Y  LI  LC+    +EA+  ++ M       + +T+  +L      
Sbjct: 291 TLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK 350

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM------------ 199
           K++     ++ +M      P    +N L+ AYC  G+ +    +LKKM            
Sbjct: 351 KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVY 410

Query: 200 ---------EEEKLGAD-----ARTYDALVLGA---------------CRAGRVEEAFVL 230
                    +++ L  D      + Y  ++                  C AG+ E+AF +
Sbjct: 411 NILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSV 470

Query: 231 LRRMVDDGQSVLYSTYAHVMGAL 253
           +R M+  G     STY+ V+  L
Sbjct: 471 IREMIGQGFIPDTSTYSKVLNYL 493



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   CK   +D A  +++ M +  +      +  ++      K   E+ GL
Sbjct: 812 PNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGL 869

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME--EEKLGADARTYDALVLGA 218
           ++ + +   +P L+ Y  L+        L     +L+++      L   + TY++L+   
Sbjct: 870 LDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESL 929

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           C A +VE AF L   M   G      ++  ++  L R    ++A+
Sbjct: 930 CLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEAL 974


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  K+A            Y  LI  LCK  K+++A  + + M + G   + +T
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVT 243

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R+  A  + + M    +SPDL  YN L+   C KG+L     ++ +M 
Sbjct: 244 FTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMS 303

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G+C+ G +E A    +RM+ +   +    Y  ++  L + G   
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 261 QAVKFV 266
            A K +
Sbjct: 364 DAEKML 369



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +++TL+    KL  +DE  R+ + M   G      T+  +++ L +  +ME+A  L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANEL 228

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E M +  + P+   +  L+  +C  G +     + K+M  + L  D  TY+ L+ G C+
Sbjct: 229 FEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +++A  L+  M   G      TY  ++    + G    A  +       +I+LD   
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVA 348

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           + +L S L    R  +A  +L+EM    LK
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 1/163 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD G  P    + TLI   CK  ++  A+ +   M         IT++ ++  L +   +
Sbjct: 233 LDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL 292

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           ++A  L++ M    + PD   Y  L+   C +G+L       K+M +E +  D   Y AL
Sbjct: 293 KQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTAL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           + G C+ GR  +A  +LR M+  G      TY  ++    + G
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 87/190 (45%), Gaps = 1/190 (0%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+    K  +I  A  V D + + G   S ++F+ +++   +   +
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M+   V PD+  Y+ L+   C +  +   + + ++M +  L  +  T+  L
Sbjct: 188 DEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTL 247

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G C+ GRV  A  + ++M+    S    TY  ++  L + G   QA   +     + +
Sbjct: 248 IDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 275 KLDTELFGSL 284
           K D   + +L
Sbjct: 308 KPDKITYTTL 317



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI  LCK   + +A  ++D M+  G     IT+  ++    +   +E A   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXY 333

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  +  D  AY  L++  C +G       +L++M    L  +  TY  ++   C+
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G V     LL+ M  DG
Sbjct: 394 KGDVWTGSKLLKEMQRDG 411



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 95  RLDKGFPRKSAYDT---LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           RL K    +  +DT   ++  L KLK         +   E G+  S   F+ ++    + 
Sbjct: 90  RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE 149

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
             +  A  + + + +  + P + ++N L+  Y   G+L     +   M+   +  D  TY
Sbjct: 150 GEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTY 209

Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDG 238
             L+ G C+  ++E+A  L   M+D+G
Sbjct: 210 SVLINGLCKESKMEDANELFEEMLDNG 236


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 71/146 (48%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  YD LI  LCK+ K+DEA  V   M+E GF  +  T+  ++    + KR + A  +
Sbjct: 631 PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 690

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M E   +P++  Y  ++   C  G       +++ MEE+    +  TY A++ G   
Sbjct: 691 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGM 750

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
            G++E    LL RM   G +  Y TY
Sbjct: 751 IGKIETCLELLERMGSKGVAPNYVTY 776



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           E + SV+ ++      + +GF P  S Y  ++  LC   K++ A  + + M  GG     
Sbjct: 424 EKAFSVIREM------IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 477

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T+  ++    +   +E+A      M+E+  +P++  Y  L+ AY     ++  + + + 
Sbjct: 478 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 537

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           M  E    +  TY AL+ G C+AG+VE+A  +  RM
Sbjct: 538 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 573



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 2/206 (0%)

Query: 31  DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90
           + P    Y  L++       +E  R LL+  + + C      ++ + +    +  L +  
Sbjct: 594 ERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 653

Query: 91  RTLARL-DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
                + + GFP     Y +LI R  K+K+ D A +V+  M E     + + +  ++  L
Sbjct: 654 EVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGL 713

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +  + +EA+ LM++M+E    P++  Y  ++  +   G +     +L++M  + +  + 
Sbjct: 714 CKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNY 773

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRM 234
            TY  L+   C+ G ++ A  LL  M
Sbjct: 774 VTYRVLIDHCCKNGALDVAHNLLEEM 799



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 2/170 (1%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC   K ++A  V+  M   GF     T+  +L+ L    +ME A+ L E MK   +  D
Sbjct: 417 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 476

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  Y  ++ ++C  G +        +M E     +  TY AL+    +A +V  A  L  
Sbjct: 477 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 536

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVMVCGGRDIKLDTELF 281
            M+ +G      TY+ ++    + G   +A + F  +CG +D+  D +++
Sbjct: 537 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVP-DVDMY 585



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  L+   CK  +++EA +++D M+  G   + I +  ++  L +  +++EA  +
Sbjct: 596 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 655

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E      L  Y+ L+  Y         S VL KM E     +   Y  ++ G C+
Sbjct: 656 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 715

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G+ +EA+ L++ M + G      TY  ++     +G
Sbjct: 716 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIG 752



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 46/301 (15%)

Query: 34  TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTL 93
            S++   L +A  +E+    +R ++ +              FI +T     VL+ LC   
Sbjct: 410 VSSFTRCLCSAGKYEKAFSVIREMIGQ-------------GFIPDTSTYSKVLNYLCNA- 455

Query: 94  ARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
           ++++  F                 Y  ++   CK   I++A +  + M E G   + +T+
Sbjct: 456 SKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 515

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
             ++    + K++  A  L E M      P++  Y+ L+  +C  G +     + ++M  
Sbjct: 516 TALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCG 575

Query: 202 EKLGADAR----------------TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            K   D                  TY AL+ G C++ RVEEA  LL  M  +G       
Sbjct: 576 SKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIV 635

Query: 246 YAHVMGALLRLGYY--AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
           Y  ++  L ++G    AQ VK  M   G    L T  + SL  +   ++R + A+ +L +
Sbjct: 636 YDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT--YSSLIDRYFKVKRQDLASKVLSK 693

Query: 304 M 304
           M
Sbjct: 694 M 694



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 8/231 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+    +++ L   + +LN    + C+ +   FN + +   +    S   + 
Sbjct: 294 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 353

Query: 93  LARLDK--GFPRKSAYDTLIGRLCKLKK------IDEALRVVDIMAEGGFGLSAITFHPI 144
           L ++ K    P    Y+ LIG +C  K       +D A +    M   G  L+ I     
Sbjct: 354 LKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSF 413

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
              L    + E+A+ ++  M      PD + Y+ +L   C    +     + ++M+   L
Sbjct: 414 TRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGL 473

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            AD  TY  +V   C+AG +E+A      M + G +    TY  ++ A L+
Sbjct: 474 VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 524



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  +I  LCK+ K DEA +++ +M E G   + +T+  ++       ++E    L
Sbjct: 701 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 760

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M    V+P+   Y  L+   C  G L     +L++M++         Y  ++ G  +
Sbjct: 761 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK 820

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
                E+  LL  +  D  +   S Y  ++  L++
Sbjct: 821 --EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIK 853



 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 41/203 (20%)

Query: 92  TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           TL   +   P    Y  LI  LC+    +EA+  ++ M       + +T+  +L      
Sbjct: 250 TLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK 309

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM------------ 199
           K++     ++ +M      P    +N L+ AYC  G+ +    +LKKM            
Sbjct: 310 KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVY 369

Query: 200 ---------EEEKLGAD-----ARTYDALVLGA---------------CRAGRVEEAFVL 230
                    +++ L  D      + Y  ++                  C AG+ E+AF +
Sbjct: 370 NILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSV 429

Query: 231 LRRMVDDGQSVLYSTYAHVMGAL 253
           +R M+  G     STY+ V+  L
Sbjct: 430 IREMIGQGFIPDTSTYSKVLNYL 452



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 9/176 (5%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   CK   +D A  +++ M +  +      +  ++      K   E+ GL
Sbjct: 771 PNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFN--KEFIESLGL 828

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME--EEKLGADARTYDALVLGA 218
           ++ + +   +P L+ Y  L+        L     +L+++      L   + TY++L+   
Sbjct: 829 LDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESL 888

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV-----MVC 269
           C A +VE AF L   M   G      ++  ++  L R    ++A+  +     MVC
Sbjct: 889 CLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMVC 944


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 101/215 (46%), Gaps = 5/215 (2%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P    Y ++I  LCK   + +A  +++ M + G+  +  T   ++  L +    E A+ L
Sbjct: 899  PNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRL 958

Query: 161  -MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             +++++     P++  Y  +++ YC +  L+    + ++M+E+ L  +  TY  L+ G C
Sbjct: 959  FLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHC 1018

Query: 220  RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
            +AG   +A+ L+  M ++G      TY  ++  L + G   +A K +       I+ D  
Sbjct: 1019 KAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGV 1078

Query: 280  LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
             +  L S+       N+A   L +M     K+GF+
Sbjct: 1079 TYTILISEQCKRADMNQALVFLNKM----FKVGFQ 1109



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 11/235 (4%)

Query: 74   NFITNTENSLSVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEA 122
            N+  N     +++S  C+   L+R +  F         P  + Y TLI   CK     +A
Sbjct: 967  NYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKA 1026

Query: 123  LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
              ++++M+  GF  +  T++ I+  L +  R EEA+ L+    + ++  D   Y  L++ 
Sbjct: 1027 YELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISE 1086

Query: 183  YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
             C + ++      L KM +     D   Y  L+   CR   ++++  L   ++  G +  
Sbjct: 1087 QCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPT 1146

Query: 243  YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
              TY  ++    R    + AVKF           D+  +G+L S L    R +EA
Sbjct: 1147 KETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEA 1201



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 28/253 (11%)

Query: 75   FITNTENSLSVLSDLCR------TLARLDKGFPRK-----SAYDTLIGRLCKLKKIDEAL 123
            F  NT    S++  LC+          L+ GF  +       Y  LI   CK   +++AL
Sbjct: 1038 FFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQAL 1097

Query: 124  RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
              ++ M + GF      +  +++   R   M+++  L + + ++ ++P    Y  ++  Y
Sbjct: 1098 VFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGY 1157

Query: 184  CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
            C +  ++      +KM +     D+ +Y AL+ G C+  R++EA  L   M+D G S   
Sbjct: 1158 CREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCE 1217

Query: 244  ST-------------YAHVMGALLRLG--YYAQAVKFVM--VCGGRDIKLDTELFGSLGS 286
             T             +A  M  L RL    + + V  ++  +C  + + L    F  L  
Sbjct: 1218 VTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVHTLIRKLCCEKKVALAALFFHKLLD 1277

Query: 287  KLIGLERFNEANF 299
            K + ++R   A F
Sbjct: 1278 KEVNVDRVTLAAF 1290



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 67/163 (41%)

Query: 93   LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
            L R D   P    Y  +I   CK +K+  A  + + M E G   +  T+  ++    +  
Sbjct: 962  LIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAG 1021

Query: 153  RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
               +A+ LME+M      P+   YN ++   C +G       +L    + ++ AD  TY 
Sbjct: 1022 NFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYT 1081

Query: 213  ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
             L+   C+   + +A V L +M   G       Y  ++ A  R
Sbjct: 1082 ILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCR 1124



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 96/239 (40%), Gaps = 36/239 (15%)

Query: 107  DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
            + ++G   ++ K+ EA+ ++  M   G  L+    + I+ V    + +E A  + + M  
Sbjct: 765  ECMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSA 824

Query: 167  IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART---------------- 210
              V PD   Y Y++  YC  GN+      + +M E     D  T                
Sbjct: 825  RGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNR 884

Query: 211  -------------------YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
                               Y +++ G C+ G V++AF LL  MV +G      T+  ++ 
Sbjct: 885  AVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIH 944

Query: 252  ALLRLGYYAQAVK-FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             L + G+  +A + F+ +    + K +   + ++ S     E+ + A  + + M ++ L
Sbjct: 945  GLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGL 1003



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 101  PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
            P K  Y ++I   C+ KK+  A++    M++ G    +I++  ++S L +  R++EA  L
Sbjct: 1145 PTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQL 1204

Query: 161  MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
             + M +  +SP       L   YC   +  +   +L+++ ++      RT   L+   C 
Sbjct: 1205 YDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLW---IRTVHTLIRKLCC 1261

Query: 221  AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
              +V  A +   +++D   +V   T A    A +    YA
Sbjct: 1262 EKKVALAALFFHKLLDKEVNVDRVTLAAFNTACIESNKYA 1301


>gi|294461912|gb|ADE76512.1| unknown [Picea sitchensis]
          Length = 224

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+   CK+ K +EAL +   M   G     +TF+ ++  L++  +++EA   
Sbjct: 27  PDGFLYNTLMKGYCKINKANEALEIYKKMDAEGCAPDVVTFNTLIFGLSKVAKVDEAKKF 86

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M      PD+  Y  L+   C KG+      +L++M++     D  TY+ L+ G C 
Sbjct: 87  LKLMVRAGHPPDVITYTSLMNGMCRKGDAMGALALLEEMQQSVCQPDGCTYNTLMHGLCM 146

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              + +A  L   +      +   TYA  + AL R G  A+A
Sbjct: 147 CQHLHQALKLYEVLKSKEVDLESGTYAAFLKALCRAGKVAEA 188



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI  L K+ K+DEA + + +M   G     IT+  +++ + R      A  L
Sbjct: 62  PDVVTFNTLIFGLSKVAKVDEAKKFLKLMVRAGHPPDVITYTSLMNGMCRKGDAMGALAL 121

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M++    PD   YN L+   C   +L     + + ++ +++  ++ TY A +   CR
Sbjct: 122 LEEMQQSVCQPDGCTYNTLMHGLCMCQHLHQALKLYEVLKSKEVDLESGTYAAFLKALCR 181

Query: 221 AGRVEEA-----FVLLRRMVDD 237
           AG+V EA     +VL R+ + D
Sbjct: 182 AGKVAEAYEVFDYVLNRKSLPD 203



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 51/113 (45%)

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  L  GK M EA  L++ M E    PD   YN L+  YC          + KKM+ E  
Sbjct: 1   MDALCNGKNMREARNLLDGMLESGCKPDGFLYNTLMKGYCKINKANEALEIYKKMDAEGC 60

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
             D  T++ L+ G  +  +V+EA   L+ MV  G      TY  +M  + R G
Sbjct: 61  APDVVTFNTLIFGLSKVAKVDEAKKFLKLMVRAGHPPDVITYTSLMNGMCRKG 113



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 72/185 (38%)

Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
           LC  K + EA  ++D M E G       ++ ++    +  +  EA  + + M     +PD
Sbjct: 4   LCNGKNMREARNLLDGMLESGCKPDGFLYNTLMKGYCKINKANEALEIYKKMDAEGCAPD 63

Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  +N L+        +      LK M       D  TY +L+ G CR G    A  LL 
Sbjct: 64  VVTFNTLIFGLSKVAKVDEAKKFLKLMVRAGHPPDVITYTSLMNGMCRKGDAMGALALLE 123

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292
            M          TY  +M  L    +  QA+K   V   +++ L++  + +    L    
Sbjct: 124 EMQQSVCQPDGCTYNTLMHGLCMCQHLHQALKLYEVLKSKEVDLESGTYAAFLKALCRAG 183

Query: 293 RFNEA 297
           +  EA
Sbjct: 184 KVAEA 188



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 45  AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS 104
           AGH  D+ T   L+N   R              +   +L++L ++ +++ +     P   
Sbjct: 93  AGHPPDVITYTSLMNGMCRK------------GDAMGALALLEEMQQSVCQ-----PDGC 135

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TL+  LC  + + +AL++ +++      L + T+   L  L R  ++ EA+ + + +
Sbjct: 136 TYNTLMHGLCMCQHLHQALKLYEVLKSKEVDLESGTYAAFLKALCRAGKVAEAYEVFDYV 195

Query: 165 KEIRVSPDLTAYNYL 179
              +  PD+ AY+ L
Sbjct: 196 LNRKSLPDVVAYSVL 210


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 102/202 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+T+I  LC  ++++EA  + + + E G   + IT++ I+  L R  R ++A  L
Sbjct: 433 PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 492

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M     S D+ +YN L+ A C  GN+  +  +L++M E+ +  +  +Y+ L+   C+
Sbjct: 493 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 552

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             RV +A  L ++M++ G +    TY  ++  L ++G+   A+  +      ++  D   
Sbjct: 553 ERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIIT 612

Query: 281 FGSLGSKLIGLERFNEANFILK 302
           +  L S    +   ++A  +L 
Sbjct: 613 YNILISWHCKVRLLDDAAMLLN 634



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 118/246 (47%), Gaps = 2/246 (0%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEAL 123
           C   A+T++ + +    L  +    R L  ++K GF P    Y  ++   CK    D+  
Sbjct: 326 CQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTR 385

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            +++ M+  G  L++  ++ ++  L +  RM+EA GL++ M+    +PD+ +YN ++   
Sbjct: 386 ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHL 445

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
           C    +     + + + EE + A+  TY+ ++    R GR ++A  L + M+  G S+  
Sbjct: 446 CNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDV 505

Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
            +Y  ++ A+ + G   +++  +     + IK +   +  L S+L    R  +A  + K+
Sbjct: 506 VSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQ 565

Query: 304 MNKRDL 309
           M  + L
Sbjct: 566 MLNQGL 571



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 112/243 (46%), Gaps = 8/243 (3%)

Query: 73  FNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           FN +      E  L+  ++L  T+  L    P    Y  L+  LCKL +I  A+R++  M
Sbjct: 298 FNTVIGGCLAEGKLAEATELYETMG-LKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREM 356

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
            + GF  + +T+  +L    +    ++   L+E M    ++ +   YN ++ A C  G +
Sbjct: 357 EKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRM 416

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
               G++++M  +    D  +Y+ ++   C   ++EEA  +   ++++G      TY  +
Sbjct: 417 DEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTI 476

Query: 250 MGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           + ALLR G +  AV+    M+  G    LD   +  L   +      + +  +L+EM ++
Sbjct: 477 IHALLRDGRWQDAVRLAKEMILHG--CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEK 534

Query: 308 DLK 310
            +K
Sbjct: 535 GIK 537



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 73/129 (56%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ LI  +CK   +D +L +++ MAE G   + ++++ ++S L + +R+ +A  L + M
Sbjct: 507 SYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQM 566

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               ++PD+  YN L+   C  G + A   +L+K+  E +  D  TY+ L+   C+   +
Sbjct: 567 LNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLL 626

Query: 225 EEAFVLLRR 233
           ++A +LL R
Sbjct: 627 DDAAMLLNR 635



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 125/292 (42%), Gaps = 9/292 (3%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
           +++ + R   + G  PD   +  Y  +++A   +  +     LLN+     C    NTF+
Sbjct: 177 EALALLRGMARHGCVPD---AVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFD 233

Query: 75  FITNTENSLSVLSDLCRTLAR-LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
            +      L  + +  R + R + KG  P    Y  L+  LC++++ DEA  ++  + E 
Sbjct: 234 DVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE- 292

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
              L+ + F+ ++       ++ EA  L E M      PD   Y+ L+   C  G + + 
Sbjct: 293 ---LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSA 349

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L++ME++    +  TY  ++   C+ G  ++   LL  M   G ++    Y  ++ A
Sbjct: 350 VRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYA 409

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           L + G   +A+  +     +    D   + ++   L   E+  EA  + + +
Sbjct: 410 LCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL 461



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 4/219 (1%)

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           L R +   D+  P    +      LC+L + DEAL ++  MA  G    A+ +  ++  L
Sbjct: 145 LYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHAL 204

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                + EA  L+  M  +  + D+  ++ ++   C  G +   + ++ +M  +      
Sbjct: 205 CDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGV 264

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY  L+ G CR  + +EA  +L R V +   VL++T   V+G  L  G  A+A +    
Sbjct: 265 MTYGFLLQGLCRVRQADEARAMLGR-VPELNVVLFNT---VIGGCLAEGKLAEATELYET 320

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            G +  + D   +  L   L  L R   A  +L+EM K+
Sbjct: 321 MGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKK 359



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 78  NTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           N + SL +L ++       +KG  P   +Y+ LI  LCK +++ +AL +   M   G   
Sbjct: 520 NVDRSLVLLEEMA------EKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAP 573

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
             +T++ +++ L +   M  A  L+E +    V PD+  YN L++ +C
Sbjct: 574 DIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHC 621


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 118/294 (40%), Gaps = 31/294 (10%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT+  Y  +++       LE  +++ +      C     T N         +++   CR 
Sbjct: 183 PTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLN---------TLIDGCCRA 233

Query: 93  LARLDKGF----------------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
              L  GF                      P     +TL+  LC+  K+++AL +  +  
Sbjct: 234 KRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQ 293

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           +    L   T + I++ + +G +++EAW L   +    V  D+  YN L+  +  +GN  
Sbjct: 294 KSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFL 353

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               +  +M  + +     TY+++V G C+  R+EEA  ++  MV +G S    T++ ++
Sbjct: 354 RAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLI 413

Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
               + G     ++       R +  DT  + +L      +   N A  I +EM
Sbjct: 414 KGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEM 467



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 96  LDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           ++ G P     + TL+  LC+  ++ +AL +VD M E G    A+T+  I++ + +    
Sbjct: 2   VETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDT 61

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
             A  ++  M E ++  ++  Y+ ++   C  GN      +  +M E+ +  +  TY+ +
Sbjct: 62  VSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCM 121

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           + G C  G+  +A  LLR M++        T++ ++ A ++ G  + A
Sbjct: 122 IDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGA 169



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 93  LARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
           L  L KG  P    Y++++   CK  +++EA ++VD M   G     +TF  ++    + 
Sbjct: 360 LEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKA 419

Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
            R+++   L   M +  +  D   YN L+  +C  G+L     + ++M    +  D  T+
Sbjct: 420 GRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITF 479

Query: 212 DALVLGACRAGRVEEAFVLLRRM 234
            +++ G C    +++   +L  +
Sbjct: 480 RSMLAGLCTKAELQKGLTMLEDL 502



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 84/181 (46%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M E G   + +TF  +++ L R  R+ +A  L++ M E    PD   Y  ++   C  G+
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
             +   +L+KM+E ++ A+   Y A+V   C+ G   +A  +   M + G      TY  
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           ++      G ++ A + +     R+I  D   F +L +  +   + + A  + +EM +R+
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 309 L 309
           +
Sbjct: 181 I 181



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
            Y+ LIG   K       LR  DI  E    G   S +T++ ++    +  R+EEA  ++
Sbjct: 338 TYNILIGVFVKEGNF---LRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMV 394

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           + M     SPD+  ++ L+  YC  G +     +  +M +  L AD  TY+AL+ G C+ 
Sbjct: 395 DSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKV 454

Query: 222 GRVEEAFVLLRRMVDDG 238
           G +  A  +   MV  G
Sbjct: 455 GDLNGAQDIFEEMVSSG 471



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 60/135 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y T++  +CKL     AL ++  M E     + + +  I+  L +     +A  +
Sbjct: 43  PDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNI 102

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M E  + P++  YN ++  YC  G  +    +L+ M E  +  D  T+ AL+    +
Sbjct: 103 FTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVK 162

Query: 221 AGRVEEAFVLLRRMV 235
            G+V  A  L R M+
Sbjct: 163 EGKVSGAEELYREML 177



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 64/135 (47%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  ++ RLCK     +A  +   M E G   + +T++ ++       +  +A  L+  M 
Sbjct: 83  YSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMI 142

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E  + PD+  ++ L+ A+  +G ++    + ++M    +     TY +++ G C+  R+E
Sbjct: 143 ERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLE 202

Query: 226 EAFVLLRRMVDDGQS 240
           +A  +   MV  G S
Sbjct: 203 DAKHMFDLMVSKGCS 217



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 11/190 (5%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           FP    Y+ +I   C   K  +A +++  M E       +TF  +++   +  ++  A  
Sbjct: 112 FPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEE 171

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M    + P    Y+ ++  +C    L     +   M  +    D  T + L+ G C
Sbjct: 172 LYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCC 231

Query: 220 RA-----------GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           RA           G V  A  L + M+ +G S    T   ++  L   G   +A++   V
Sbjct: 232 RAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKV 291

Query: 269 CGGRDIKLDT 278
                + LDT
Sbjct: 292 FQKSKMDLDT 301



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 43/101 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TLI   CK  ++D+ L +   M + G     IT++ ++    +   +  A  +
Sbjct: 404 PDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDI 463

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
            E M    V PD   +  +L   C K  L     +L+ +++
Sbjct: 464 FEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQK 504


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 74/140 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + L+   C+ +K++EAL + +++      L  + ++ I+  + +G +++EAW L
Sbjct: 495 PDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDL 554

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V PD+  YN +++ +C K  ++  + +  KM++     D  TY+ L+ G  +
Sbjct: 555 FCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLK 614

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
           AG ++++  L+  M  +G S
Sbjct: 615 AGEIDKSIELISEMRSNGFS 634



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 100/219 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI  LC   ++ EA  +V+ M   G  +  +T+  I++ + +    + A  L
Sbjct: 219 PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 278

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  + PD+  Y+ ++   C  G+ +    +  +M E+ +  +  TY+ ++ G C 
Sbjct: 279 LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCS 338

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LLR M++   +    T+  ++ A ++ G   +A K       R I  DT  
Sbjct: 339 FGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVT 398

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYY 319
           + S+        RF++A  +   M   D+     + D Y
Sbjct: 399 YNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVY 437



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 12/248 (4%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           +FN +         LS    T  +L K GF P    ++TL+  LC   +I EAL +   M
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202

Query: 130 AEGG--------FGLS--AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
            E G         GL+   ITF+ +++ L    R+ EA  L+  M    +  D+  Y  +
Sbjct: 203 VETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI 262

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
           +   C  G+  +   +L KMEE  +  D   Y A++   C+ G   +A  L   M++ G 
Sbjct: 263 VNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGI 322

Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299
           +    TY  ++      G ++ A + +     R+I  D   F +L S  +   +  EA  
Sbjct: 323 APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEK 382

Query: 300 ILKEMNKR 307
           +  EM  R
Sbjct: 383 LCDEMLHR 390



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+TLI   C++  ++ A  +   M   G     IT + +L      +++EEA  L EV
Sbjct: 463 TTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV 522

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           ++  ++  D  AYN ++   C    +     +   +    +  D +TY+ ++ G C    
Sbjct: 523 IQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSA 582

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + +A VL  +M D+G     STY  ++   L+ G   ++++ +
Sbjct: 583 ISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELI 625



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 91/216 (42%), Gaps = 12/216 (5%)

Query: 101 PRKSAYDT--LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           P  +A D   +IG   ++ + D A+ +   M      L+  +F+ ++       ++  + 
Sbjct: 102 PFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSL 161

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFK----------GNLTATSGVLKKMEEEKLGADA 208
                + ++   PD+  +N LL   C +          G +  T  +  +M E  L    
Sbjct: 162 STFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVV 221

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            T++ L+ G C  GRV EA  L+ +MV  G  +   TY  ++  + ++G    A+  +  
Sbjct: 222 ITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 281

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                IK D  ++ ++  +L      ++A ++  EM
Sbjct: 282 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEM 317



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KG  P    Y+ +I   C   +  +A R++  M E       +TF+ ++S   +  ++
Sbjct: 318 LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKL 377

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L + M    + PD   YN ++  +C            K M +     D  T++ +
Sbjct: 378 FEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTI 433

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           +   CRA RV+E   LLR +   G    +  Y+T  H
Sbjct: 434 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 470



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 88/205 (42%), Gaps = 10/205 (4%)

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
            K +D+A+   D M       +A+  + ++ V  R  R + A  L   M+  R+  ++ +
Sbjct: 84  FKSLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYS 143

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV------ 229
           +N L+  +C    L+ +     K+ +     D  T++ L+ G C   R+ EA        
Sbjct: 144 FNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMV 203

Query: 230 ----LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
               L  +MV+ G + +  T+  ++  L   G   +A   V    G+ + +D   +G++ 
Sbjct: 204 ETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 263

Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
           + +  +     A  +L +M +  +K
Sbjct: 264 NGMCKMGDTKSALNLLSKMEETHIK 288



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 1/124 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY+ +I  +CK  K+DEA  +   +   G      T++ ++S       + +A  L   M
Sbjct: 534 AYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKM 593

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K+    PD + YN L+      G +  +  ++ +M       DA T   +V      GR+
Sbjct: 594 KDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTI-KMVADLITDGRL 652

Query: 225 EEAF 228
           +++F
Sbjct: 653 DKSF 656


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 86/175 (49%), Gaps = 2/175 (1%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEAL 123
           C     T+N + +     + + D  + L R+ +    P    Y++++  LCK  ++DEA 
Sbjct: 273 CLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAY 332

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
            V +++  GG+ L  +T   ++  L + +R+++A  L+  M+    +PD+ AY  L+  +
Sbjct: 333 EVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGF 392

Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           C    L  +     +M ++       TY  ++   C++ RV +  +LL+ M++ G
Sbjct: 393 CKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 447



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 93/206 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI   CK ++  +  +++  M + G   + IT++ ++  L +  +  +A+ L
Sbjct: 170 PDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNL 229

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            ++M      P    +N ++  +C  G L     + + M +     D  TY+ ++ GACR
Sbjct: 230 AQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACR 289

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A R+++A  LL RM + G      TY  ++  L +     +A +   V       LD   
Sbjct: 290 ANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVT 349

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
             +L   L    R ++A  +L+EM +
Sbjct: 350 CSTLIDGLCKSRRLDDAEKLLREMER 375



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 4/193 (2%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARL--DKG-FPRKSAYDTLIGRLCKLKKIDEA 122
           C  +  TFN + +    +  L DL   L +L  D+G  P    Y+ +I   C+  +ID+A
Sbjct: 238 CKPSHFTFNLMIDMFCKVGQL-DLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDA 296

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
            ++++ M E G     +T++ I+S L +  +++EA+ + EV++      D+   + L+  
Sbjct: 297 RQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDG 356

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
            C    L     +L++ME      D   Y  L+ G C+A +++++      M+D G    
Sbjct: 357 LCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPT 416

Query: 243 YSTYAHVMGALLR 255
             TY+ V+  L +
Sbjct: 417 VITYSIVIDKLCK 429



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 1/146 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   CK +   +A R++D M + G       ++ I+  L    R++ A   
Sbjct: 31  PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 90

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+    +P +  Y  L+ A C    ++  S +L+ M E     +  TY+ L+ G C+
Sbjct: 91  YRDMQR-HCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCK 149

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
            G ++EA VL  +M+++  S    TY
Sbjct: 150 LGNMDEAVVLFNQMLENSCSPDVFTY 175



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%)

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +LS   R K+ +EA+ L +       SPD   Y+ L+  +C   +      +L +ME+  
Sbjct: 4   LLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 63

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +      Y+ ++ G C  GRV+ A V  R M
Sbjct: 64  IVPHNAVYNTIIKGLCDNGRVDSALVHYRDM 94


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 71/155 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y   I  L +  KIDEA R++  M + G G   +T+  ++  L   +++++A  L
Sbjct: 262 PNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCL 321

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK     PD   Y  LL  +   G+L     +  +ME +    D  T+  LV   C+
Sbjct: 322 FTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCK 381

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           AGR+ EAF LL  M   G      TY  ++  LLR
Sbjct: 382 AGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLR 416



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 98/226 (43%), Gaps = 4/226 (1%)

Query: 26   SGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85
            SG F   PT   +  L++       L+    + +      C   +  +N + N    L  
Sbjct: 888  SGDF--SPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGH 945

Query: 86   LSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
            +   C    R+ K G  P   +Y  L+  LC   ++D+AL   + + + G     + ++ 
Sbjct: 946  VDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNL 1005

Query: 144  ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
            +++ L R +R EEA  L   M+   + PDL  YN L+      G +     + ++++   
Sbjct: 1006 MINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIG 1065

Query: 204  LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
            L  +  TY+AL+ G   +G  E A+ + ++M+  G      T+A +
Sbjct: 1066 LKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 2/281 (0%)

Query: 32   EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
            +PT   Y+ L++      ++E    L  +     C     T+N + +       +++L  
Sbjct: 787  KPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFD 846

Query: 92   TLAR-LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
                 L +G  P    Y+ +I  L K  ++D+A+ +   +  G F  +  TF P++  L 
Sbjct: 847  LYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLL 906

Query: 150  RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
            +  R+++A  + + M      P+   YN L+  Y   G++       K+M +E +  D +
Sbjct: 907  KSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLK 966

Query: 210  TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
            +Y  LV   C AGRV++A     ++   G       Y  ++  L R     +A+      
Sbjct: 967  SYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEM 1026

Query: 270  GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              R I  D   + SL   L  +    EA  I +E+    LK
Sbjct: 1027 QNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLK 1067



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 112/280 (40%), Gaps = 2/280 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P+   +  L+ A+G  R+++TV  LL +           T+            + +  R
Sbjct: 226 KPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYR 285

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            + R+D     P    Y  LI  LC  +K+D+A+ +   M         +T+  +L   +
Sbjct: 286 IMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFS 345

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
               +++   +   M+    +PD+  +  L+ A C  G +     +L  M ++ +  +  
Sbjct: 346 DCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLH 405

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           TY+ L+ G  RA R+++A  L   M   G      TY  ++    + G+  +A++     
Sbjct: 406 TYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKM 465

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             R I  +     +    L  + R  EA  +  E+    L
Sbjct: 466 KARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGL 505



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 4/211 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +  L+  LCK  +I+EA  ++D M + G   +  T++ ++S L R  R+++A  L
Sbjct: 367 PDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDL 426

Query: 161 MEVMKEIRVSPDLTAYNY-LLTAYCFK-GNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
              M+ + V P  TAY Y LL  Y  K G+        +KM+   +  +    +A +   
Sbjct: 427 FSNMESLGVEP--TAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSL 484

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
              GR+ EA  +   +   G +    TY  +M    ++G   +A+K +        + D 
Sbjct: 485 AEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDV 544

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            +  SL   L    R  EA  +   M + +L
Sbjct: 545 IVINSLIDTLYKAGRVEEAWQMFCRMEEMNL 575



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 83/203 (40%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +Y+ LI  L +     EAL V   M   G   S  TF  ++    + + ++   GL+E M
Sbjct: 196 SYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEM 255

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           + + + P++  Y   +      G +     ++K+M+++  G D  TY  L+   C A ++
Sbjct: 256 ESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKL 315

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++A  L  +M          TY  ++      G+  +  K            D   F  L
Sbjct: 316 DDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTIL 375

Query: 285 GSKLIGLERFNEANFILKEMNKR 307
            + L    R NEA  +L  M K+
Sbjct: 376 VNALCKAGRINEAFDLLDTMRKQ 398



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 112/300 (37%), Gaps = 39/300 (13%)

Query: 23  FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT--- 79
           FTK  +   +P    Y  L++       L+ V  +  +   D       TF  + N    
Sbjct: 322 FTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCK 381

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
              ++   DL  T+ R     P    Y+TLI  L +  ++D+AL +   M   G   +A 
Sbjct: 382 AGRINEAFDLLDTM-RKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAY 440

Query: 140 TF-----------HP------------------------ILSVLTRGKRMEEAWGLMEVM 164
           T+           HP                         L  L    R+ EA  +   +
Sbjct: 441 TYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNEL 500

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K   ++PD   YN ++  Y   G +     +L +M + +   D    ++L+    +AGRV
Sbjct: 501 KSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRV 560

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           EEA+ +  RM +   +    TY  ++  L + G   +AV+      G     +T  F +L
Sbjct: 561 EEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTL 620



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A   ++ M E GF L+A +++ ++  L +    +EA  +   M    + P L  ++ L+
Sbjct: 177 QAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALM 236

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
            A   + N+    G+L++ME   L  +  TY   +    R G+++EA+ +++RM DDG  
Sbjct: 237 VASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCG 296

Query: 241 VLYSTYAHVMGAL 253
               TY  ++ AL
Sbjct: 297 PDVVTYTVLIDAL 309



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 89/206 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   A +  +  L ++ ++ EA  + + +   G    ++T++ ++   ++  +++EA  L
Sbjct: 472 PNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKL 531

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M +++  PD+   N L+      G +     +  +MEE  L     TY+ L+ G  +
Sbjct: 532 LSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGK 591

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++++A  L   M   G S    T+  ++  L +      A+K        + + D   
Sbjct: 592 EGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLT 651

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           F ++    I   +   A ++  +M K
Sbjct: 652 FNTIIHGFIKQNQIKNAIWLFHQMKK 677



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 1/163 (0%)

Query: 143 PILSVLTRGKRMEEAWGL-MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           PI+ VL + K+   A  + ++  KE+ V P L  YN L+  +    N+     + ++M+ 
Sbjct: 759 PIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKS 818

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
                D  TY++L+    ++G++ E F L   M+  G      TY  V+  L++     +
Sbjct: 819 AGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDK 878

Query: 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           A+         D       FG L   L+   R ++A+ +   M
Sbjct: 879 AMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGM 921



 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 2/156 (1%)

Query: 99  GFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAE-GGFGLSAITFHPILSVLTRGKRMEE 156
           G PRK S+ D ++G L  +     AL     + E      +  T + +L +L   +R+E+
Sbjct: 83  GKPRKGSSSDEVLGVLHSISDPIHALFYFKSVGELPNVVHTTETCNHMLEILRVHRRVED 142

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
              + ++M+   +  ++  Y  +  +   +G L      L+KM E     +A +Y+ L+ 
Sbjct: 143 MAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIH 202

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
              ++G  +EA  + RRMV +G      T++ +M A
Sbjct: 203 FLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVA 238


>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 68/143 (47%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           S +D LI    K   ID A+   +++   GF  S  T + IL+ + + KR E  W L   
Sbjct: 164 SVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFRE 223

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M +  + P++  +N L+   C +GNL     +LK+MEE        TY+ L+   C+ GR
Sbjct: 224 MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGR 283

Query: 224 VEEAFVLLRRMVDDGQSVLYSTY 246
            + A  L+  M+  G      TY
Sbjct: 284 YKAAIELIDYMICKGIEADVCTY 306



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 7/173 (4%)

Query: 66  CFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDE 121
           C N   TFN + N    E +L    +L + +   + GF P    Y+TL+   CK  +   
Sbjct: 230 CPNVG-TFNILINGLCVEGNLKKAGNLLKQME--ENGFVPTIVTYNTLLNWYCKKGRYKA 286

Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
           A+ ++D M   G      T++  +  L    R  +A+ L++ M++  +SP+   YN L+ 
Sbjct: 287 AIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLIN 346

Query: 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            +  +G +   + V  +M +  L  +  TY+AL+ G C  G  EEA  LL  M
Sbjct: 347 GFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHM 399



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 9/208 (4%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P+ + Y TLI  +C++  I  A ++ D M   GFG   +    ++  L    + E+A  
Sbjct: 756 IPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAML 815

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           +++ M  +R+ P +  +  L+  +C    +     +   ME   L  D   Y+ L++G C
Sbjct: 816 VLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMC 875

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--------VMVCGG 271
             G    AF L   M         +TYA ++ A+       Q  K         ++  GG
Sbjct: 876 ANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERGLISWGG 935

Query: 272 RDIKLDTELFGSLGS-KLIGLERFNEAN 298
               LD EL  ++G    I  +R N  N
Sbjct: 936 STQHLDKELTVAMGKLNYIRFKRRNSVN 963



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 1/171 (0%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           DKG  P    ++ LI  LC    + +A  ++  M E GF  + +T++ +L+   +  R +
Sbjct: 226 DKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYK 285

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L++ M    +  D+  YN  +   C          +LKKM +E +  +  TY+ L+
Sbjct: 286 AAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLI 345

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            G  + G++  A  +   M     S    TY  ++G    +G + +A++ +
Sbjct: 346 NGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLL 396



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 82/210 (39%), Gaps = 21/210 (10%)

Query: 41  LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF 100
           ++N  GH  D  T   L++   RD     A  F               LC  ++R+    
Sbjct: 421 VMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKF---------------LCH-MSRIGL-V 463

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    YD +I     +     A    D M + G   S  T+  +L  L +G  + EA   
Sbjct: 464 PNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKF 523

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +  I  + D   YN LL   C  GNL     +  KM +  +  D+ TY +L+ G CR
Sbjct: 524 LNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCR 583

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
            G+   A  L    +  G+  L+    HVM
Sbjct: 584 KGKAVTAVCLFGTAM--GRGTLFPN--HVM 609



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 16/198 (8%)

Query: 72  TFNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           T+N + N    E  + V + +   +++ D   P    Y+ LIG  C +   +EALR++D 
Sbjct: 340 TYNTLINGFVKEGKIGVAAQVFNEMSKFDLS-PNCVTYNALIGGHCHVGDFEEALRLLDH 398

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G  L+                + EA  +  VM       D    N L+++ C  G 
Sbjct: 399 MEAAGLRLN------------EHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGK 446

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L      L  M    L  ++ TYD ++ G    G    AF     M+  GQ   + TY  
Sbjct: 447 LGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGS 506

Query: 249 VMGALLRLGYYAQAVKFV 266
           ++  L + G   +A KF+
Sbjct: 507 LLKGLCKGGNLVEAKKFL 524



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 100/252 (39%), Gaps = 15/252 (5%)

Query: 29  FPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-FITNTENSLSVLS 87
            P    S  Y+ L+       +L     L +K  ++     + T++  +T        ++
Sbjct: 530 IPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVT 589

Query: 88  DLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
            +C     + +G  FP    Y  L+  L K      A    + M + G     + F+ I+
Sbjct: 590 AVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAII 649

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
              +R  +M +A      M+   V P+L  YN LL  +  K  L     +   M  E + 
Sbjct: 650 DSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIF 709

Query: 206 ADARTYDALVLGACRAG------------RVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
            D  T+ +L+LG  ++G             +EE+ V+L  M+++G    ++ Y  ++  +
Sbjct: 710 PDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGM 769

Query: 254 LRLGYYAQAVKF 265
            R+G    A K 
Sbjct: 770 CRVGDIQGAFKL 781



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
           + L+  LC+  K+ EA + +  M+  G   ++IT+  I++          A+   + M +
Sbjct: 435 NVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIK 494

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
               P    Y  LL   C  GNL      L ++       D+  Y+ L+   C++G + E
Sbjct: 495 CGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHE 554

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272
           A  L  +MV +       TY+ ++  L R G    AV       GR
Sbjct: 555 AVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGR 600



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 90/224 (40%), Gaps = 18/224 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH-----------PILSVLT 149
           P  + Y+ L+    K + +   L +   M   G     +TFH           P L V  
Sbjct: 675 PNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKL 734

Query: 150 RGKR-MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            GK  MEE+  ++  M E  V P    Y  L+   C  G++     +  +ME    G+  
Sbjct: 735 LGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHE 794

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--V 266
               A+V G    G+ E+A ++L  M+        +T+  +M    R    A+A+K   V
Sbjct: 795 VAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGV 854

Query: 267 M-VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           M +CG   +KLD   +  L   +        A  + +EM  RDL
Sbjct: 855 MELCG---LKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDL 895


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 100/211 (47%), Gaps = 4/211 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P+   Y  LV A   ++   ++  L++K  ++        FN I N  +    L    +
Sbjct: 351 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 410

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILSVL 148
              ++ +    P  S ++TLI    K+ K++E+ R++D+M  +     +  T + ++   
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAW 470

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN-LTATSGVLKKMEEEKLGAD 207
              +++EEAW ++  M+   V PD+  +N L  AY   G+  TA   ++ +M   K+  +
Sbjct: 471 CNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPN 530

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            RT   +V G C  G++EEA     RM + G
Sbjct: 531 VRTCGTIVNGYCEEGKMEEALRFFYRMKELG 561



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 1/168 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+  L + K     L ++  + + G     I F+ I++  +    +++A  +
Sbjct: 352 PSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKI 411

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGAC 219
            E MKE    P  + +N L+  Y   G L  +S +L  M  +E L  + RT + LV   C
Sbjct: 412 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 471

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
              ++EEA+ ++ +M   G      T+  +  A  R+G    A   ++
Sbjct: 472 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMII 519



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 64/129 (49%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  L +  +  EA  + + + E G   S IT+  +++ LTR K       L+  +++  
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD   +N ++ A    GNL     + +KM+E      A T++ L+ G  + G++EE+ 
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESS 444

Query: 229 VLLRRMVDD 237
            LL  M+ D
Sbjct: 445 RLLDMMLRD 453



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 97/243 (39%), Gaps = 4/243 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE---NSLSVLSD 88
           +P     + LV A  ++R +E    ++ K           TFN +        S     D
Sbjct: 457 QPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAED 516

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           +       +K  P      T++   C+  K++EALR    M E G   +   F+ ++   
Sbjct: 517 MIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGF 576

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                M+    ++++M+E  V PD+  ++ L+ A+   G++     +   M E  +  D 
Sbjct: 577 LNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDI 636

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVM 267
             +  L  G  RAG  E+A  +L +M   G       Y  ++      G   +A++ +  
Sbjct: 637 HAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKK 696

Query: 268 VCG 270
           +CG
Sbjct: 697 MCG 699



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 111/281 (39%), Gaps = 8/281 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  ++ ++NA+    +L+    +  K     C  TA+TFN +      +  L +  R
Sbjct: 386 KPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSR 445

Query: 92  TLA---RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            L    R +   P     + L+   C  +KI+EA  +V  M   G     +TF+ +    
Sbjct: 446 LLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAY 505

Query: 149 TR-GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            R G        ++  M   +V P++     ++  YC +G +        +M+E  +  +
Sbjct: 506 ARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPN 565

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV- 266
              +++L+ G      ++    ++  M + G      T++ +M A   +G   +  +   
Sbjct: 566 LFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYT 625

Query: 267 -MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            M+ GG  I  D   F  L           +A  IL +M K
Sbjct: 626 DMLEGG--IDPDIHAFSILAKGYARAGEPEKAEQILNQMRK 664



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           ++ RG R +EA  +   + E    P L  Y  L+TA   + +  +   ++ K+E+  L  
Sbjct: 329 LIERG-RPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKP 387

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D   ++A++  +  +G +++A  +  +M + G     ST+  ++    ++G   ++ + +
Sbjct: 388 DTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL 447


>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 484

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 12/185 (6%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI     + ++D+ALR+V+ M   G   +AIT+  +L  L   ++M EA  +
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSI 277

Query: 161 MEVMKEIRVSP-DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++ M +  ++P D + +  L++++C  GNL A + VLK M    +  +A  Y  L+   C
Sbjct: 278 LKEMVDKYIAPTDNSIFMRLISSHCKVGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYC 337

Query: 220 RAGRVEEAFVLLRRMVDDG-----QSVLY---STYAHVMGALLRLGYYAQA---VKFVMV 268
           +AG+ ++A  LL ++++       QS L+   S Y  ++  L   G  ++A   V+ +M 
Sbjct: 338 KAGQYDQAVKLLDKLIEKDIIVRPQSTLHMEPSAYNPIVEYLCNNGQTSKAEALVRQLMK 397

Query: 269 CGGRD 273
            G +D
Sbjct: 398 LGVQD 402



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 77/186 (41%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           + E++++   M E G   +  ++  +  V+ R  R   A      M    + P    +N 
Sbjct: 96  VQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNV 155

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           ++  +   G +   +   + M+  ++  D  TY+ ++ G CR  ++EEA      M    
Sbjct: 156 MIWGFFLSGKVETANRFFEDMKSREISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKN 215

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
                 TY  ++   + +     A++ V    G  IK +   + +L   L   E+ +EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 299 FILKEM 304
            ILKEM
Sbjct: 276 SILKEM 281



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 63/136 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  ++ +I       K++ A R  + M         IT++ +++   R K+MEEA   
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVITYNTMINGYCRVKKMEEAEKY 207

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              MK   + P +  Y  L+  Y     +     ++++M+   +  +A TY  L+ G C 
Sbjct: 208 FVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCN 267

Query: 221 AGRVEEAFVLLRRMVD 236
           A ++ EA  +L+ MVD
Sbjct: 268 AEKMSEARSILKEMVD 283



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 3/144 (2%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           +YD L   + +  +   A R  + M   G   +  TF+ ++       ++E A    E M
Sbjct: 117 SYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDM 176

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K   +SPD+  YN ++  YC    +        +M+ + +     TY  L+ G     +V
Sbjct: 177 KSREISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQV 236

Query: 225 EEAFVLLRRMVDDG---QSVLYST 245
           ++A  L+  M   G    ++ YST
Sbjct: 237 DDALRLVEEMKGYGIKPNAITYST 260



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 33/167 (19%), Positives = 72/167 (43%)

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           I+ +L R  ++  A  ++  M +  +  D   +  ++ +Y  +G +  +  + +KMEE  
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELG 110

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           +    ++YDAL     R GR   A     +M+ +G      T+  ++      G    A 
Sbjct: 111 VERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETAN 170

Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +F      R+I  D   + ++ +    +++  EA     EM  ++++
Sbjct: 171 RFFEDMKSREISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIE 217


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 74/140 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + L+   C+ +K++EAL + +++      L  + ++ I+  + +G +++EAW L
Sbjct: 500 PDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDL 559

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V PD+  YN +++ +C K  ++  + +  KM++     D  TY+ L+ G  +
Sbjct: 560 FCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLK 619

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
           AG ++++  L+  M  +G S
Sbjct: 620 AGEIDKSIELISEMRSNGFS 639



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 100/219 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI  LC   ++ EA  +V+ M   G  +  +T+  I++ + +    + A  L
Sbjct: 224 PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 283

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  + PD+  Y+ ++   C  G+ +    +  +M E+ +  +  TY+ ++ G C 
Sbjct: 284 LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCS 343

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LLR M++   +    T+  ++ A ++ G   +A K       R I  DT  
Sbjct: 344 FGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVT 403

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYY 319
           + S+        RF++A  +   M   D+     + D Y
Sbjct: 404 YNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVY 442



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 17/253 (6%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           +FN +         LS    T  +L K GF P    ++TL+  LC   +I EAL +   M
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202

Query: 130 AEGGF-------------GLS--AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
            E GF             GL+   ITF+ +++ L    R+ EA  L+  M    +  D+ 
Sbjct: 203 VETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVV 262

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            Y  ++   C  G+  +   +L KMEE  +  D   Y A++   C+ G   +A  L   M
Sbjct: 263 TYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEM 322

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           ++ G +    TY  ++      G ++ A + +     R+I  D   F +L S  +   + 
Sbjct: 323 LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKL 382

Query: 295 NEANFILKEMNKR 307
            EA  +  EM  R
Sbjct: 383 FEAEKLCDEMLHR 395



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+TLI   C++  ++ A  +   M   G     IT + +L      +++EEA  L EV
Sbjct: 468 TTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV 527

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           ++  ++  D  AYN ++   C    +     +   +    +  D +TY+ ++ G C    
Sbjct: 528 IQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSA 587

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + +A VL  +M D+G     STY  ++   L+ G   ++++ +
Sbjct: 588 ISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELI 630



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KG  P    Y+ +I   C   +  +A R++  M E       +TF+ ++S   +  ++
Sbjct: 323 LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKL 382

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L + M    + PD   YN ++  +C            K M +     D  T++ +
Sbjct: 383 FEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTI 438

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           +   CRA RV+E   LLR +   G    +  Y+T  H
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 475



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
            K +D+A+   D M       +A+  + ++ V  R  R + A  L   M+  R+  ++ +
Sbjct: 84  FKSLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYS 143

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF------- 228
           +N L+  +C    L+ +     K+ +     D  T++ L+ G C   R+ EA        
Sbjct: 144 FNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMV 203

Query: 229 --------VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
                    L  +MV+ G + +  T+  ++  L   G   +A   V    G+ + +D   
Sbjct: 204 ETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVT 263

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +G++ + +  +     A  +L +M +  +K
Sbjct: 264 YGTIVNGMCKMGDTKSALNLLSKMEETHIK 293



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 1/124 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY+ +I  +CK  K+DEA  +   +   G      T++ ++S       + +A  L   M
Sbjct: 539 AYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKM 598

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K+    PD + YN L+      G +  +  ++ +M       DA T   +V      GR+
Sbjct: 599 KDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTI-KMVADLITDGRL 657

Query: 225 EEAF 228
           +++F
Sbjct: 658 DKSF 661


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 121/269 (44%), Gaps = 2/269 (0%)

Query: 38  YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD-LCRTLARL 96
           Y+ ++     E D+ T + L ++  +        T+N + +    L +L +  C      
Sbjct: 255 YNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMK 314

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D G  P    Y+ LI   CK +++ +A   +  M   G   + +T+  ++  L +   ++
Sbjct: 315 DVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQ 374

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
           +A   +  M+ + +SP+   Y  L+ A C  G L+    +  +M + ++G +  TY  L+
Sbjct: 375 QAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLL 434

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G C+ GR+ EA  L R M+  G +    TY  ++   ++      A++ +     + IK
Sbjct: 435 DGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIK 494

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEM 304
            D  L+G++   L    +  E  F++ EM
Sbjct: 495 PDLLLYGTIIWGLCSQNKLEECEFVMSEM 523



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 98/207 (47%), Gaps = 2/207 (0%)

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKID 120
           R+ C      F+ + +    L +L +  +  +R+ +   FP+  + +  + RL K  K D
Sbjct: 175 RNVCVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGD 234

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
            + +    M   G   S  T++ ++  + +   M  A  L   MK++ ++PD+  YN L+
Sbjct: 235 LSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLI 294

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             Y   G L  +  + ++M++     D  TY+AL+   C+  ++ +AF  L  M + G  
Sbjct: 295 DGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLK 354

Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVM 267
               TY+ ++ AL +     QA+KF++
Sbjct: 355 PNVVTYSTLIDALCKEHMLQQAIKFLL 381



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 9/257 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLE-TVRYLLNKRARDCCFNTAN 71
           +P++         SG    +P    Y  L++A   E  L+  +++LL+ R      N   
Sbjct: 338 MPKAFHFLHEMKNSGL---KPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEF- 393

Query: 72  TFNFITNTENSLSVLSD---LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           T+  + +       LSD   L   + ++  GF     Y TL+  LCK  ++ EA  +   
Sbjct: 394 TYTSLIDANCKAGYLSDALKLADEMLQVQVGF-NVVTYTTLLDGLCKEGRMMEAEDLFRA 452

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M + G   +  T+  ++    + KR+E A  L++ +KE ++ PDL  Y  ++   C +  
Sbjct: 453 MIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNK 512

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           L     V+ +M+   + A++  Y   +    + G+  EA  LL+ M D G  V   T+  
Sbjct: 513 LEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCV 572

Query: 249 VMGALLRLGYYAQAVKF 265
           ++  L + G   +A+ +
Sbjct: 573 LIDGLCKKGLVEEAIDY 589



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +LI   CK   + +AL++ D M +   G + +T+  +L  L +  RM EA  L
Sbjct: 390 PNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDL 449

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V+P+L  Y  L+  +     +     +LK+++E+K+  D   Y  ++ G C 
Sbjct: 450 FRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCS 509

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             ++EE   ++  M   G       Y   M A  + G   +A+  +
Sbjct: 510 QNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLL 555



 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 1/194 (0%)

Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
           K  K  EAL ++  M + G  ++ +TF  ++  L +   +EEA      M +  + P+  
Sbjct: 544 KTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNV 603

Query: 175 AY-NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
           A    L+   C    + A   +  +M+++ +  D   Y AL+ G  +    +EA  +  R
Sbjct: 604 AVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSR 663

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
           M + G  +    Y  ++  L +     QA  F+    G+ I  D  L   L  K   L  
Sbjct: 664 MSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGS 723

Query: 294 FNEANFILKEMNKR 307
            +EA  +  E+ K+
Sbjct: 724 IDEAIELHDELLKK 737



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 60/141 (42%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           ++  +  YN ++   C +G++     +  +M++  L  D  TY++L+ G  + G ++E+F
Sbjct: 248 IAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESF 307

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            L   M D G      TY  ++    +     +A  F+       +K +   + +L   L
Sbjct: 308 CLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDAL 367

Query: 289 IGLERFNEANFILKEMNKRDL 309
                  +A   L +M +  L
Sbjct: 368 CKEHMLQQAIKFLLDMRRVGL 388



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF-HPILSVLTRGKRMEEAWGLMEVMKE 166
            LI  LCK   ++EA+     MA+     + +     ++  L +   +E A  L + M++
Sbjct: 572 VLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQD 631

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + PD  AY  L+       +      +  +M E  +  D   Y +LV G  +   V++
Sbjct: 632 KNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQ 691

Query: 227 AFVLLRRMVDDG 238
           A + L  M+  G
Sbjct: 692 ARMFLNEMIGKG 703


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 74/140 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + L+   C+ +K++EAL + +++      L  + ++ I+  + +G +++EAW L
Sbjct: 284 PDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDL 343

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V PD+  YN +++ +C K  ++  + +  KM++     D  TY+ L+ G  +
Sbjct: 344 FCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLK 403

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
           AG ++++  L+  M  +G S
Sbjct: 404 AGEIDKSIELISEMRSNGFS 423



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 100/219 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI  LC   ++ EA  +V+ M   G  +  +T+  I++ + +    + A  L
Sbjct: 8   PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  + PD+  Y+ ++   C  G+ +    +  +M E+ +  +  TY+ ++ G C 
Sbjct: 68  LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCS 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LLR M++   +    T+  ++ A ++ G   +A K       R I  DT  
Sbjct: 128 FGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVT 187

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYY 319
           + S+        RF++A  +   M   D+     + D Y
Sbjct: 188 YNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVY 226



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+TLI   C++  ++ A  +   M   G     IT + +L      +++EEA  L EV
Sbjct: 252 TTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV 311

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           ++  ++  D  AYN ++   C    +     +   +    +  D +TY+ ++ G C    
Sbjct: 312 IQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSA 371

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + +A VL  +M D+G     STY  ++   L+ G   ++++ +
Sbjct: 372 ISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELI 414



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 77/179 (43%)

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M E G     ITF+ +++ L    R+ EA  L+  M    +  D+  Y  ++   C  G+
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
             +   +L KMEE  +  D   Y A++   C+ G   +A  L   M++ G +    TY  
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 120

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
           ++      G ++ A + +     R+I  D   F +L S  +   +  EA  +  EM  R
Sbjct: 121 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHR 179



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KG  P    Y+ +I   C   +  +A R++  M E       +TF+ ++S   +  ++
Sbjct: 107 LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKL 166

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L + M    + PD   YN ++  +C            K M +     D  T++ +
Sbjct: 167 FEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTI 222

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           +   CRA RV+E   LLR +   G    +  Y+T  H
Sbjct: 223 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 259



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 1/124 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY+ +I  +CK  K+DEA  +   +   G      T++ ++S       + +A  L   M
Sbjct: 323 AYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKM 382

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K+    PD + YN L+      G +  +  ++ +M       DA T   +V      GR+
Sbjct: 383 KDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTI-KMVADLITDGRL 441

Query: 225 EEAF 228
           +++F
Sbjct: 442 DKSF 445


>gi|297805650|ref|XP_002870709.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316545|gb|EFH46968.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 608

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +++  +V ++M   G   +  TF+ + +V        E    +E M+E    PDL  YN 
Sbjct: 215 MEDCWQVYNVMCRVGIHPNTYTFNILTNVFCNNSNYGEVDDFLEKMEEEGFEPDLVTYNT 274

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           L+++YC +G L     + K M   ++  D  TY +L+ G C+ GRV EA     RMVD G
Sbjct: 275 LVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRG 334

Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
                 +Y  ++ A  + G   Q+ K +    G  +  D
Sbjct: 335 IKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPD 373



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 9/190 (4%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E+   V + +CR         P    ++ L    C      E    ++ M E GF    +
Sbjct: 216 EDCWQVYNVMCRVGIH-----PNTYTFNILTNVFCNNSNYGEVDDFLEKMEEEGFEPDLV 270

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T++ ++S   R  R++EA+ L ++M   RV PDL  Y  L+   C  G +        +M
Sbjct: 271 TYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRM 330

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH--VMGALLRLG 257
            +  +  D  +Y+ L+   C+ G ++++  LL  M+  G SV+   +    ++   +R G
Sbjct: 331 VDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEML--GNSVVPDRFTCKVIVEGFVREG 388

Query: 258 YYAQAVKFVM 267
               AV FV+
Sbjct: 389 RLLAAVNFVV 398



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 101/214 (47%), Gaps = 3/214 (1%)

Query: 91  RTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           +T  R+ D+G  P   +Y+TLI   CK   + ++ +++  M          T   I+   
Sbjct: 325 QTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGF 384

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGAD 207
            R  R+  A   +  ++ ++V   +   ++L+ + C +G   A   +L+++ +EE   A 
Sbjct: 385 VREGRLLAAVNFVVELRRLKVIIPIEVCDFLIKSLCQEGKPFAAKHLLERISKEEGHEAK 444

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY+ L+   C    +EEA VL  ++ +  Q +   TY  ++G L R+G   +A   + 
Sbjct: 445 PETYNNLIESLCCCDAIEEALVLKGKLKNQNQVLDVKTYRALIGCLCRIGRNREAESLMA 504

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
                ++K D+ + G+L ++      F++A  +L
Sbjct: 505 EMLDSEVKPDSIICGALVNRYCKELDFDKAESLL 538



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 49/121 (40%)

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
           +   Y+ LI  LC    I+EAL +   +      L   T+  ++  L R  R  EA  LM
Sbjct: 444 KPETYNNLIESLCCCDAIEEALVLKGKLKNQNQVLDVKTYRALIGCLCRIGRNREAESLM 503

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
             M +  V PD      L+  YC + +      +L     E    D  +Y++LV   C  
Sbjct: 504 AEMLDSEVKPDSIICGALVNRYCKELDFDKAESLLSFFAMEFRIFDTLSYNSLVNALCET 563

Query: 222 G 222
           G
Sbjct: 564 G 564


>gi|302143623|emb|CBI22376.3| unnamed protein product [Vitis vinifera]
          Length = 554

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 5/233 (2%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           T  ++ VL D+      ++  +P    Y++L+   CK  K ++   ++  +   G G + 
Sbjct: 286 TVQAMEVLEDM-----AIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNT 340

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T++ +L  L      +E   ++ +M      P +  YN L+   C  G L        +
Sbjct: 341 VTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQ 400

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M       D  TY+ L+   C+ G V+EA  LL  + D   S    TY  V+  L + G 
Sbjct: 401 MVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGC 460

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
             +A++       R    D     +L   L  L+   +A  ILKEMNKR+ ++
Sbjct: 461 MEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRI 513



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 7/251 (2%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLE-TVRYLLNKRARDCCFNTANTF 73
           Q++ V       G +PD  T   Y+ LVN    +   E T   + N  +     NT  T+
Sbjct: 288 QAMEVLEDMAIEGCYPDIVT---YNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTV-TY 343

Query: 74  NFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           N + ++  +     ++   L  ++     P    Y+ LI  LCK   +D A+   D M  
Sbjct: 344 NTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVS 403

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
                  IT++ +L+ L +   ++EA  L+  + + R SP L  YN ++     KG +  
Sbjct: 404 HNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEK 463

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +  +M E     D  T+  L  G  R   VE+A V+L+ M    Q +  S +  V+ 
Sbjct: 464 AMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAFRFVIH 523

Query: 252 ALLRLGYYAQA 262
            L   G   +A
Sbjct: 524 GLCAAGMIEEA 534



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 106/275 (38%), Gaps = 40/275 (14%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
           C N       + +TE +  VL      +  +  G P    Y+ L+G LCK   +  A+ +
Sbjct: 168 CINLIRGLIKLESTERATRVLK-----IMVMSGGIPDIITYNMLVGGLCKKGLLKTAIEL 222

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL------------------------- 160
           +D M+  G    AIT++ IL  +      ++A G                          
Sbjct: 223 LDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCK 282

Query: 161 -------MEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
                  MEV++++ +    PD+  YN L+   C +G    T+ ++  +    +G +  T
Sbjct: 283 HCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVT 342

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ L+   C  G  +E   +L  M    Q     TY  ++  L + G   +A+ F     
Sbjct: 343 YNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMV 402

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
             +   D   + +L + L      +EA  +L  +N
Sbjct: 403 SHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLN 437



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 88/206 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL+  LC     DE   ++ IM       + +T++ +++ L +   ++ A   
Sbjct: 338 PNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINF 397

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M      PD+  YN LL A C +G +     +L  + + +      TY+ ++ G  +
Sbjct: 398 FDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAK 457

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G +E+A  L   M++ G +    T+  +   L RL     A+  +     R+ ++    
Sbjct: 458 KGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSA 517

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           F  +   L       EAN + +++ +
Sbjct: 518 FRFVIHGLCAAGMIEEANQLHQKLTE 543



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 17/256 (6%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V +    SG  PD  T   Y+ LV     +  L+T   LL++ +   C   A T+N I  
Sbjct: 187 VLKIMVMSGGIPDIIT---YNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILR 243

Query: 79  T-------ENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMA 130
                   + ++    D      +L KG P     Y  LI  +CK     +A+ V++ MA
Sbjct: 244 CMFDHGGFDQAIGFWKD------QLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMA 297

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G     +T++ +++   +  + E+   ++  +    + P+   YN LL + C  G   
Sbjct: 298 IEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWD 357

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               +L  M          TY+ L+ G C+ G ++ A     +MV         TY  ++
Sbjct: 358 EVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLL 417

Query: 251 GALLRLGYYAQAVKFV 266
            AL + G   +A+  +
Sbjct: 418 AALCKEGMVDEALHLL 433



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 8/164 (4%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG----KRMEEAWGLME 162
           + ++  LC   K+  A R++D+MA      + I + P    L RG    +  E A  +++
Sbjct: 134 NEILQNLCSKGKLVNASRLIDVMARR----NQIPYFPSCINLIRGLIKLESTERATRVLK 189

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
           +M      PD+  YN L+   C KG L     +L +M       DA TY+ ++      G
Sbjct: 190 IMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHG 249

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             ++A    +  +  G      TY  ++  + +     QA++ +
Sbjct: 250 GFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVL 293


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 124/289 (42%), Gaps = 27/289 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ ++N    E  ++  R  LN+          +++ F  +T +  +VL  LC  
Sbjct: 213 PNIVTYNVIINGMCREGRVDDAREFLNR---------LSSYGFQPDTVSYTTVLKGLCAA 263

Query: 93  LARLD-----------KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
               D              P +  +D L+   C+   ++ A++V++ M+  G   +    
Sbjct: 264 KRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLC 323

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + +++ + +  R+++A+  +  M     SPD  +Y  +L   C          +LK+M  
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 383

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           +    +  T++  +   C+ G +E+A +L+ +M + G  V   TY  ++      G    
Sbjct: 384 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 443

Query: 262 AVK--FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           A++  + M C     K +T  + +L + L   ER + A  +L EM ++D
Sbjct: 444 ALELFYSMPC-----KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD 487



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 7/228 (3%)

Query: 82  SLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +LS+L D+      L +G  P    Y  L+  +CK     +A+ V+D M   G   + +T
Sbjct: 164 ALSLLDDM------LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVT 217

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ I++ + R  R+++A   +  +      PD  +Y  +L   C          +  +M 
Sbjct: 218 YNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 277

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E+    +  T+D LV   CR G VE A  +L +M   G +   +    V+  + + G   
Sbjct: 278 EKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 337

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
            A +F+   G      DT  + ++   L   ER+ +A  +LKEM +++
Sbjct: 338 DAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKN 385



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+   C   ++D AL +   M       + IT+  +L+ L   +R++ A  L+  M 
Sbjct: 428 YNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEML 484

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +   +P++  +N L++ +C KG +     ++++M E     +  TY+ L+ G  +    E
Sbjct: 485 QKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSE 544

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           EA  LL  +V +G S    TY+ ++G L R     +A+K   +
Sbjct: 545 EALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHI 587



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+  LC  +++D A  ++  M +     + +TF+ ++S   +   M+EA  L
Sbjct: 455 PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIEL 514

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M E   +P+L  YN LL       N      +L  +    +  D  TY +++    R
Sbjct: 515 VEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSR 574

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             RVEEA  +   + D G       Y  ++ AL +      A+ F
Sbjct: 575 EDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDF 619



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 87/194 (44%), Gaps = 16/194 (8%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           V++ +C+   R+D  F            P   +Y T++  LC+ ++ ++A  ++  M   
Sbjct: 326 VINTICKQ-GRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 384

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
               + +TF+  + +L +   +E+A  L+E M E     ++  YN L+  +C +G + + 
Sbjct: 385 NCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 444

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +   M       +  TY  L+ G C A R++ A  LL  M+    +    T+  ++  
Sbjct: 445 LELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSF 501

Query: 253 LLRLGYYAQAVKFV 266
             + G   +A++ V
Sbjct: 502 FCQKGLMDEAIELV 515



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 6/169 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKID---EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           P  S+ +    RL +L   D   EA R+VD     G          ++  L R  R  +A
Sbjct: 38  PSASSPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDA 97

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++   +    + D+ AYN L+  YC  G L A   ++  M    +  DA TY  ++ G
Sbjct: 98  ARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRG 154

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            C  GRV EA  LL  M+  G      TY  ++ A+ +   + QA++ +
Sbjct: 155 LCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVL 203



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 2/213 (0%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
           + P +P +  Y  L+    +   L+    LL +  +  C     TFN + +      ++ 
Sbjct: 450 SMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMD 509

Query: 88  DLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           +    + ++ + G  P    Y+TL+  + K    +EAL ++  +   G     +T+  I+
Sbjct: 510 EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSII 569

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            VL+R  R+EEA  +  +++++ + P    YN +L A C + N          M      
Sbjct: 570 GVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCM 629

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            +  TY  L+ G      ++E   LLR +   G
Sbjct: 630 PNELTYITLIEGLANEDFLKETRDLLRELCSRG 662



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 8/226 (3%)

Query: 88  DLCRTLARLDKGFPRKSAYDT-----LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           DL      +D+   R  A D      LI  LC+  +  +A RV+      G  +    ++
Sbjct: 58  DLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYN 117

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +++   R  +++ A  L+  M    V+PD   Y  ++   C +G +     +L  M   
Sbjct: 118 TLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 174

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
                  TY  L+   C++    +A  +L  M   G +    TY  ++  + R G    A
Sbjct: 175 GCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 234

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
            +F+        + DT  + ++   L   +R+ +   +  EM +++
Sbjct: 235 REFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 280


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 5/249 (2%)

Query: 16  SVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNF 75
           S  +     + G  PD  T   +  L++  G E  L   +   N+  +        T+N 
Sbjct: 238 SARILSDMMRMGISPDVIT---FSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNS 294

Query: 76  ITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           + N      +L +  + L  L  KGF P    Y+TLI   CK K++D+ ++++ +M+  G
Sbjct: 295 LINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDG 354

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
                 T++ +     +  +   A  ++  M    V PD+  +N LL   C  G +    
Sbjct: 355 VDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKAL 414

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
             L+ +++ K      TY+ ++ G C+A +VE+A+ L   +   G S    TY  +M  L
Sbjct: 415 VRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGL 474

Query: 254 LRLGYYAQA 262
            R   + +A
Sbjct: 475 RRKRLWREA 483



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 19/227 (8%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI RL        + R++  M   G     ITF  ++ V  +  ++ EA   
Sbjct: 217 PDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQ 276

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V+P++  YN L+   C  G L     VL  +  +    +A TY+ L+ G C+
Sbjct: 277 YNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCK 336

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV---MVCGGR----- 272
           A RV++   +L  M  DG      TY  +     + G ++ A K +   + CG       
Sbjct: 337 AKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYT 396

Query: 273 -DIKLDTEL-FGSLGSKLIGLERFNEA---------NFILKEMNKRD 308
            +I LD     G +G  L+ LE   ++         N I+K + K D
Sbjct: 397 FNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKAD 443



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 1/171 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P    + +L+   C + +  EA+ +VD +   G+  + + ++ I+  L    ++  A
Sbjct: 144 GFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTA 203

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             +++ MK++ + PD+  YN L+T     G    ++ +L  M    +  D  T+ AL+  
Sbjct: 204 LDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDV 263

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
             + G++ EA      M+    +    TY  ++  L   G   +A K + V
Sbjct: 264 YGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNV 314



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 28/192 (14%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           ++ TLI   C+  ++  AL  +  M + GF  S +TF  +++      R  EA  L++ +
Sbjct: 116 SFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQI 175

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
             +   P++  YN ++ + C KG +     VLK M++  +  D  TY++L+         
Sbjct: 176 VGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLI--------- 226

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
                   R+   G    +   A ++  ++R+G     + F  +          +++G  
Sbjct: 227 -------TRLFHSGT---WGVSARILSDMMRMGISPDVITFSAL---------IDVYGKE 267

Query: 285 GSKLIGLERFNE 296
           G  L   +++NE
Sbjct: 268 GQLLEAKKQYNE 279



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 4/196 (2%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K ++AL +   MAE     S + F  +L  + +  + E    L   ++ + +S DL ++ 
Sbjct: 59  KFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFT 118

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            L+  +C    L+     L KM +        T+ +LV G C   R  EA  L+ ++V  
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGL 178

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           G       Y  ++ +L   G    A+  +       I+ D   + SL ++L     +  +
Sbjct: 179 GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVS 238

Query: 298 NFILKEMNKRDLKMGF 313
             IL +M    ++MG 
Sbjct: 239 ARILSDM----MRMGI 250


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 1/188 (0%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E  +  + DL + +A+     P +  Y+TLI  L K    DEAL  +    E GF +  +
Sbjct: 360 EKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKL 419

Query: 140 TFHPILSVLTRGKRMEEAWGLM-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            +  I+  L +  RM EA  L+ E++ +    PD+  Y  ++  +C  G +     +L+ 
Sbjct: 420 GYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQV 479

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M       +  +Y AL+ G CR G+  EA  ++    +   S    TY+ +M  L R G 
Sbjct: 480 MHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGK 539

Query: 259 YAQAVKFV 266
            ++A   V
Sbjct: 540 LSEACDVV 547



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 2/186 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ +I   C L +++EA+ +++ M   G     ++++ I+  L + KR+ E   L
Sbjct: 310 PNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDL 369

Query: 161 MEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           M+ M KE  + PD   YN L+       +       LK  +E+    D   Y A+V   C
Sbjct: 370 MKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALC 429

Query: 220 RAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           + GR+ EA  L+  M+  G       TY  V+    RLG   +A K + V      K +T
Sbjct: 430 KEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNT 489

Query: 279 ELFGSL 284
             + +L
Sbjct: 490 VSYTAL 495



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 89/191 (46%), Gaps = 7/191 (3%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           ++ +AL+V+ +M   G   + +  +  + V  R  R+E+A   +E M+ + + P++  YN
Sbjct: 257 QLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYN 316

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++  YC    +     +L+ M  +    D  +Y  ++   C+  R+ E   L+++M  +
Sbjct: 317 CMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKE 376

Query: 238 G----QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
                  V Y+T  H+   L +  +  +A+ F+     +  ++D   + ++   L    R
Sbjct: 377 HGLVPDQVTYNTLIHM---LTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGR 433

Query: 294 FNEANFILKEM 304
            +EA  ++ EM
Sbjct: 434 MSEAKDLINEM 444



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 123/317 (38%), Gaps = 29/317 (9%)

Query: 18  LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
           L+    +K    PD  T   Y  +VN      +++  + LL            +T     
Sbjct: 440 LINEMLSKGHCPPDVVT---YTAVVNGFCRLGEVDKAKKLLQ---------VMHTHGHKP 487

Query: 78  NTENSLSVLSDLCRTLARLDK-----------GFPRKSAYDTLIGRLCKLKKIDEALRVV 126
           NT +  ++L+ +CRT   L+              P    Y  ++  L +  K+ EA  VV
Sbjct: 488 NTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVV 547

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
             M   GF    +  + +L  L R  R  EA   ME       + ++  +  ++  +C  
Sbjct: 548 REMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQN 607

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             L A   VL  M      AD  TY  LV    + GR+ EA  L+++M+  G      TY
Sbjct: 608 DELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTY 667

Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF----ILK 302
             V+    ++G     V  +     R  K  T ++  +  KL  L +  EA+     +L+
Sbjct: 668 RTVIHRYCQMGKVDDLVAILEKMISRQ-KCRT-IYNQVIEKLCVLGKLEEADTLLGKVLR 725

Query: 303 EMNKRDLKMGFKLRDYY 319
             ++ D K  + L + Y
Sbjct: 726 TASRSDAKTCYALMEGY 742



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 12/231 (5%)

Query: 80  ENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           E  +S   DL   +  L KG   P    Y  ++   C+L ++D+A +++ +M   G   +
Sbjct: 431 EGRMSEAKDLINEM--LSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPN 488

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            +++  +L+ + R  +  EA  +M + +E   SP+   Y+ ++     +G L+    V++
Sbjct: 489 TVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVR 548

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +M  +         + L+   CR GR  EA   +   ++ G ++    +  V+    +  
Sbjct: 549 EMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQND 608

Query: 258 YYAQAVKFV----MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
               A+  +    ++    D+   T L  +LG K     R  EA  ++K+M
Sbjct: 609 ELDAALSVLDDMYLINKHADVFTYTTLVDTLGKK----GRIAEATELMKKM 655



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y +++  L K K    + RV+ +M   G   +   F  ++   +R  ++ +A  ++ +M
Sbjct: 209 VYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLM 268

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +   V P+L   N  +  +     L      L++M+   +  +  TY+ ++ G C   RV
Sbjct: 269 QRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRV 328

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           EEA  LL  M   G      +Y  +MG L +
Sbjct: 329 EEAIELLEDMHSKGCLPDKVSYYTIMGYLCK 359



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 13/194 (6%)

Query: 49  RDLETVRYLLNKRARDCCFNTAN----TFNFITNTE--NSLSVLSDLCRTLARLDKGFPR 102
           R  E  +++     + C  N  N       F  N E   +LSVL D+       D     
Sbjct: 574 RTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADV---- 629

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
              Y TL+  L K  +I EA  ++  M   G   + +T+  ++    +  ++++   ++E
Sbjct: 630 -FTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILE 688

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            M  I      T YN ++   C  G L     +L K+      +DA+T  AL+ G  + G
Sbjct: 689 KM--ISRQKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKG 746

Query: 223 RVEEAFVLLRRMVD 236
               A+ +  RM +
Sbjct: 747 VPLSAYKVACRMFN 760


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 7/161 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + +LI   C+  ++D+ALR+   MA+     +  TF  I+  L +  R +EA GL
Sbjct: 221 PDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGL 280

Query: 161 MEVMKEIRVSPDLTA----YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           +    E+ + PD+      YN ++   C  G +   + + K MEE+    D  TY  L++
Sbjct: 281 L---NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILII 337

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           G C   R+ EA +    MV+ G S    T    +  LL+ G
Sbjct: 338 GYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 378



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 71/154 (46%)

Query: 81  NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           N +S   ++ R L R     P    + ++I   CK  K+++A+ V + M   G   + +T
Sbjct: 131 NEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVT 190

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ +++   +   +  A  + + M  +R  PD+  ++ L+  YC  G L     +   M 
Sbjct: 191 YNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMA 250

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           + ++  +  T+  ++   C+  R +EA  LL  +
Sbjct: 251 QHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNEL 284



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 3/203 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ L+N  G   DL +   +  +  R  C     TF+ + +       L D  R 
Sbjct: 186 PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRI 245

Query: 93  LARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLT 149
            + + +    P    +  +I  LCK  + DEA+ ++ ++         A  ++P++ VL 
Sbjct: 246 WSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLC 305

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +  +++EA  + + M+E    PD   Y  L+  YC K  ++       +M E     D+ 
Sbjct: 306 KCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSI 365

Query: 210 TYDALVLGACRAGRVEEAFVLLR 232
           T +  +    +AG   E   ++R
Sbjct: 366 TVNCFISCLLKAGMPNEVDHVMR 388



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           +F+ ++  + R  ++++A  L+E M E   SPD   +N L+   C    ++    VL+++
Sbjct: 84  SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRL 143

Query: 200 EEEKLG-ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           + + +   +  T+ +++ G C+AG++E+A  +   MV  G      TY  ++    ++G 
Sbjct: 144 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 203

Query: 259 YAQAVK 264
              AV+
Sbjct: 204 LGSAVE 209



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 1/121 (0%)

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV-SPDLTAYN 177
           +D +  ++   +E G  + A  ++ ++S L    R+ +   L E   + RV SPD+ ++N
Sbjct: 27  LDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFN 86

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++   C  G +     ++++M E     D  T++ LV G CR   V     +LRR+  D
Sbjct: 87  VVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRD 146

Query: 238 G 238
           G
Sbjct: 147 G 147


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 100/211 (47%), Gaps = 4/211 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P+   Y  LV A   ++   ++  L++K  ++        FN I N  +    L    +
Sbjct: 351 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 410

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILSVL 148
              ++ +    P  S ++TLI    K+ K++E+ R++D+M  +     +  T + ++   
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAW 470

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN-LTATSGVLKKMEEEKLGAD 207
              +++EEAW ++  M+   V PD+  +N L  AY   G+  TA   ++ +M   K+  +
Sbjct: 471 CNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPN 530

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            RT   +V G C  G++EEA     RM + G
Sbjct: 531 VRTCGTIVNGYCEEGKMEEALRFFYRMKELG 561



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 1/168 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+  L + K     L ++  + + G     I F+ I++  +    +++A  +
Sbjct: 352 PSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKI 411

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGAC 219
            E MKE    P  + +N L+  Y   G L  +S +L  M  +E L  + RT + LV   C
Sbjct: 412 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 471

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
              ++EEA+ ++ +M   G      T+  +  A  R+G    A   ++
Sbjct: 472 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMII 519



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 64/129 (49%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  L +  +  EA  + + + E G   S IT+  +++ LTR K       L+  +++  
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD   +N ++ A    GNL     + +KM+E      A T++ L+ G  + G++EE+ 
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESS 444

Query: 229 VLLRRMVDD 237
            LL  M+ D
Sbjct: 445 RLLDMMLRD 453



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 97/243 (39%), Gaps = 4/243 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE---NSLSVLSD 88
           +P     + LV A  ++R +E    ++ K           TFN +        S     D
Sbjct: 457 QPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAED 516

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           +       +K  P      T++   C+  K++EALR    M E G   +   F+ ++   
Sbjct: 517 MIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGF 576

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                M+    ++++M+E  V PD+  ++ L+ A+   G++     +   M E  +  D 
Sbjct: 577 LNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDI 636

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVM 267
             +  L  G  RAG  E+A  +L +M   G       Y  ++      G   +A++ +  
Sbjct: 637 HAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKK 696

Query: 268 VCG 270
           +CG
Sbjct: 697 MCG 699



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 111/281 (39%), Gaps = 8/281 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  ++ ++NA+    +L+    +  K     C  TA+TFN +      +  L +  R
Sbjct: 386 KPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSR 445

Query: 92  TLA---RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            L    R +   P     + L+   C  +KI+EA  +V  M   G     +TF+ +    
Sbjct: 446 LLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAY 505

Query: 149 TR-GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            R G        ++  M   +V P++     ++  YC +G +        +M+E  +  +
Sbjct: 506 ARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPN 565

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV- 266
              +++L+ G      ++    ++  M + G      T++ +M A   +G   +  +   
Sbjct: 566 LFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYT 625

Query: 267 -MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            M+ GG  I  D   F  L           +A  IL +M K
Sbjct: 626 DMLEGG--IDPDIHAFSILAKGYARAGEPEKAKQILNQMRK 664



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           ++ RG R +EA  +   + E    P L  Y  L+TA   + +  +   ++ K+E+  L  
Sbjct: 329 LIERG-RPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKP 387

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D   ++A++  +  +G +++A  +  +M + G     ST+  ++    ++G   ++ + +
Sbjct: 388 DTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL 447


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 4/218 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCK  K+ EA  V+ +M +       IT+  ++        +++A  +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M  + V+PD+  Y  L+  +C    +     + K+M ++ +     TY +L+ G C+
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+   + L+  M D GQ     TY+ ++  L + G+  +A+        ++I+ +   
Sbjct: 387 SGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFT 446

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDY 318
           F  L   L    R  +A  + +++    L  G+ L  Y
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDL----LTKGYHLNVY 480



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   CK K +DEAL +   M +       +T+  ++  L +  R+   W L
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDL 396

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++     D+  Y+ L+   C  G+L     +  KM+++++  +  T+  L+ G C+
Sbjct: 397 IDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCK 456

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR+++A  + + ++  G  +   TY  ++    + G   +A+
Sbjct: 457 GGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEAL 499



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
            F + S++     +   ++ +D+A+   + M         I F+ IL    + K    A 
Sbjct: 20  SFLQNSSHSHFHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAV 79

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L   ++   + PDL   N L+  +C  G +T    VL K+ +     D  T + L+ G 
Sbjct: 80  SLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGL 139

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
           C  G+V++A     +++  G  +   +YA ++  + ++G    A+KF+    GR  K D 
Sbjct: 140 CLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDV 199

Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
            ++ ++   +   +  +EA  +  EM
Sbjct: 200 VMYNTIIDAMCKYQLVSEAYGLFSEM 225



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 35/236 (14%)

Query: 96  LDKGFP-RKSAYDTLIGRLCK----------LKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           L +GF   + +Y TLI  +CK          L+KID  L   D+          + ++ I
Sbjct: 156 LAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDV----------VMYNTI 205

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +  + + + + EA+GL   M    +S D+  YN L+  +C  G L    G+L +M  + +
Sbjct: 206 IDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTI 265

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY----- 259
             +  TY+ LV   C+ G+V+EA  +L  M+         TY+ +M      GY+     
Sbjct: 266 NPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD-----GYFLVYEV 320

Query: 260 --AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
             AQ V   M   G  +  D   +  L +     +  +EA  + KEM+++++  G 
Sbjct: 321 KKAQHVFNAMSLMG--VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGI 374



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y+TLI   C + K+ EA+ +++ M       +  T++ ++  L +  +++EA  ++ VM
Sbjct: 236 TYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVM 295

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V PD+  Y+ L+  Y     +     V   M    +  D  TY  L+ G C+   V
Sbjct: 296 LKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMV 355

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +EA  L + M          TY+ ++  L + G
Sbjct: 356 DEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSG 388


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 6/247 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P+   V      +G  PD  T   Y  +V++      +E   +++       C  T   
Sbjct: 221 LPKMRKVYSDMLDAGCQPDIVT---YGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFI 277

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           ++ + +T      + D   T   + K    P    Y+ L+   CK+KK D A RV+D M 
Sbjct: 278 YSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDME 337

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G   ++ T++ IL+ L    + +EA+ +   M + R  PD   Y  ++  +C    L 
Sbjct: 338 GHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIK-RCQPDSDTYTMMIKMFCENDRLE 396

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               V K M  ++      T+  L+ G C  G V +A VLL  M++ G     ST+  + 
Sbjct: 397 MALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLR 456

Query: 251 GALLRLG 257
             LL+ G
Sbjct: 457 QLLLKEG 463



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 113/280 (40%), Gaps = 41/280 (14%)

Query: 66  CFNTANTFNFITNTENSL---SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122
           C +T  +F+ +  +   +    ++ D+   + R  +G      +  ++ +  + +K+DEA
Sbjct: 98  CAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRR--QGVVNVETFGIIMRKYARAQKVDEA 155

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           +   ++M + G   +   F+ +L  L + K + +A  + E M   R SPD   Y+ LL  
Sbjct: 156 VYTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRKAQEIFEQMNG-RFSPDAKTYSILLEG 214

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---Q 239
           +    NL     V   M +     D  TY  +V   C+ GRVEEA  +++ M   G    
Sbjct: 215 WGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPT 274

Query: 240 SVLYSTYAHVMGALLRLG--------------------YYAQAVKFVMV----------- 268
           + +YS   H  G  +R+                     Y A    F  V           
Sbjct: 275 TFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMD 334

Query: 269 -CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
              G  I  ++  +  + +KLI L + +EA  + + M KR
Sbjct: 335 DMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKR 374



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 87/213 (40%), Gaps = 6/213 (2%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           + ++V V +  T  G    +PT+  Y  LV+  G E  +E          +D        
Sbjct: 256 VEEAVFVVQDMTSRGC---QPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVV 312

Query: 73  FNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           +N +      +    +  R +  ++  G  P    ++ ++ +L  L K DEA RV   M 
Sbjct: 313 YNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMI 372

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
           +     S  T+  ++ +     R+E A  + + M+  +  P +  ++ L+   C KG ++
Sbjct: 373 KRCQPDSD-TYTMMIKMFCENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVS 431

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
               +L+ M E+ +     T+  L     + GR
Sbjct: 432 QACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGR 464


>gi|359488082|ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Vitis vinifera]
          Length = 498

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 5/233 (2%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           T  ++ VL D+      ++  +P    Y++L+   CK  K ++   ++  +   G G + 
Sbjct: 195 TVQAMEVLEDM-----AIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNT 249

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
           +T++ +L  L      +E   ++ +M      P +  YN L+   C  G L        +
Sbjct: 250 VTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQ 309

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           M       D  TY+ L+   C+ G V+EA  LL  + D   S    TY  V+  L + G 
Sbjct: 310 MVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGC 369

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
             +A++       R    D     +L   L  L+   +A  ILKEMNKR+ ++
Sbjct: 370 MEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRI 422



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 124/295 (42%), Gaps = 7/295 (2%)

Query: 15  QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLE-TVRYLLNKRARDCCFNTANTF 73
           Q++ V       G +PD  T   Y+ LVN    +   E T   + N  +     NT  T+
Sbjct: 197 QAMEVLEDMAIEGCYPDIVT---YNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTV-TY 252

Query: 74  NFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           N + ++  +     ++   L  ++     P    Y+ LI  LCK   +D A+   D M  
Sbjct: 253 NTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVS 312

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
                  IT++ +L+ L +   ++EA  L+  + + R SP L  YN ++     KG +  
Sbjct: 313 HNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEK 372

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
              +  +M E     D  T+  L  G  R   VE+A V+L+ M    Q +  S +  V+ 
Sbjct: 373 AMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAFRFVIH 432

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            L +      A++ + +      K + E++ ++   +       EAN + +++ +
Sbjct: 433 GLCKKKKVDIAIQVLEMMVSSQCKPNEEIYSAIIKGVGAAGMIEEANQLHQKLTE 487



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 106/275 (38%), Gaps = 40/275 (14%)

Query: 66  CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
           C N       + +TE +  VL      +  +  G P    Y+ L+G LCK   +  A+ +
Sbjct: 77  CINLIRGLIKLESTERATRVLK-----IMVMSGGIPDIITYNMLVGGLCKKGLLKTAIEL 131

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL------------------------- 160
           +D M+  G    AIT++ IL  +      ++A G                          
Sbjct: 132 LDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCK 191

Query: 161 -------MEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
                  MEV++++ +    PD+  YN L+   C +G    T+ ++  +    +G +  T
Sbjct: 192 HCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVT 251

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y+ L+   C  G  +E   +L  M    Q     TY  ++  L + G   +A+ F     
Sbjct: 252 YNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMV 311

Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
             +   D   + +L + L      +EA  +L  +N
Sbjct: 312 SHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLN 346



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 17/256 (6%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V +    SG  PD  T   Y+ LV     +  L+T   LL++ +   C   A T+N I  
Sbjct: 96  VLKIMVMSGGIPDIIT---YNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILR 152

Query: 79  T-------ENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMA 130
                   + ++    D      +L KG P     Y  LI  +CK     +A+ V++ MA
Sbjct: 153 CMFDHGGFDQAIGFWKD------QLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMA 206

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
             G     +T++ +++   +  + E+   ++  +    + P+   YN LL + C  G   
Sbjct: 207 IEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWD 266

Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
               +L  M          TY+ L+ G C+ G ++ A     +MV         TY  ++
Sbjct: 267 EVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLL 326

Query: 251 GALLRLGYYAQAVKFV 266
            AL + G   +A+  +
Sbjct: 327 AALCKEGMVDEALHLL 342



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 8/145 (5%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG----KRMEEAWGLME 162
           + ++  LC   K+  A R++D+MA      + I + P    L RG    +  E A  +++
Sbjct: 43  NEILQNLCSKGKLVNASRLIDVMARR----NQIPYFPSCINLIRGLIKLESTERATRVLK 98

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
           +M      PD+  YN L+   C KG L     +L +M       DA TY+ ++      G
Sbjct: 99  IMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHG 158

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYA 247
             ++A    +  +  G      TY 
Sbjct: 159 GFDQAIGFWKDQLRKGCPAYLITYT 183


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 2/224 (0%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P    Y+ L+N       +   + LL +   +    T  TFN + +       L     
Sbjct: 403 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 462

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
            L+ + +    P   +Y +++   CK  KI EA+ ++D M       +A  ++ I+    
Sbjct: 463 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 522

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
                ++A+ L+E MK   +SP +  YN L+   C +  ++    ++  +   +L  DA 
Sbjct: 523 EHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 582

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +Y+ L+   C  G +++A  L +RM   G      TY  ++  L
Sbjct: 583 SYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGL 626



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 105/221 (47%), Gaps = 2/221 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ LI  LCK ++I  A  ++  M + G   +  TF+ ++    R  ++E+ + +
Sbjct: 404 PDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIV 463

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  + P++ +Y  ++ A+C  G +     +L  M  + +  +A+ Y+A++     
Sbjct: 464 LSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVE 523

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  ++AF+L+ +M  +G S    TY  ++  L      ++A + +       +  D   
Sbjct: 524 HGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVS 583

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321
           + +L S        ++A  + + M+K  +K    +R Y+++
Sbjct: 584 YNTLISACCYRGNIDKALDLQQRMHKYGIKS--TVRTYHQL 622



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 10/221 (4%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           PT   ++ L++A G    LE    +L++   +       ++  I N   +      +   
Sbjct: 439 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVN---AFCKNGKIPEA 495

Query: 93  LARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           +A LD  F     P    Y+ +I    +    D+A  +V+ M   G   S +T++ ++  
Sbjct: 496 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 555

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L    ++ EA  ++  +   R+ PD  +YN L++A C++GN+     + ++M +  + + 
Sbjct: 556 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 615

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
            RTY  L+ G   AGR+ E   L ++M+ +  +V+ S   H
Sbjct: 616 VRTYHQLISGLGGAGRLIEMEYLYQKMMQN--NVVPSNAIH 654



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 89/209 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y+TLI   C+  +++ A      M         IT++ +++ L + +R+  A  L
Sbjct: 369 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 428

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M++  V+P +  +N L+ AY   G L     VL +M+E  L  +  +Y ++V   C+
Sbjct: 429 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 488

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++ EA  +L  M           Y  ++ A +  G   QA   V       I      
Sbjct: 489 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVT 548

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           +  L   L    + +EA  I+  ++   L
Sbjct: 549 YNLLIKGLCNQSQISEAEEIINSLSNHRL 577



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 91/200 (45%), Gaps = 1/200 (0%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  LCK  K+  A  V+  +   G   + + ++ +++   +   +E A+     MK   
Sbjct: 342 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 401

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD   YN L+   C    +T    +L +M++  +     T++ L+    R G++E+ F
Sbjct: 402 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 461

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
           ++L  M ++G      +Y  ++ A  + G   +AV  +     +D+  + +++ ++    
Sbjct: 462 IVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAY 521

Query: 289 IGLERFNEANFILKEMNKRD 308
           +     N+  FIL E  K +
Sbjct: 522 VE-HGPNDQAFILVEKMKSN 540



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 84/205 (40%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+T+I    K   ++    + D M   G   +AIT++ +LS L R  RM E   
Sbjct: 228 LPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSA 287

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L++ M   ++ PD   Y+ L       G+  A   +  K  +  +     T   L+ G C
Sbjct: 288 LLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLC 347

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           + G+V  A  +L+ +V+ G       Y  ++    + G    A         R IK D  
Sbjct: 348 KDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHI 407

Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
            + +L + L   ER   A  +L EM
Sbjct: 408 TYNALINGLCKAERITNAQDLLMEM 432



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 11/236 (4%)

Query: 85  VLSDLCR------TLARLD-----KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           +LS LCR      T A LD     K  P    Y  L   L +       L +     + G
Sbjct: 272 LLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNG 331

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
             +   T   +L+ L +  ++  A  +++ +    + P    YN L+  YC  G L    
Sbjct: 332 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 391

Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
               +M+   +  D  TY+AL+ G C+A R+  A  LL  M D+G +    T+  ++ A 
Sbjct: 392 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 451

Query: 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            R G   +    +       +K +   +GS+ +      +  EA  IL +M  +D+
Sbjct: 452 GRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDV 507



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 77/169 (45%)

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           + R + R     P   +Y+ +I  + +  +  +A+ V D M E     + IT++ ++   
Sbjct: 182 MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 241

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            +G  +E  + L + M    + P+   YN LL+  C  G +  TS +L +M  +K+  D 
Sbjct: 242 IKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 301

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            TY  L  G  R G  +    L  + + +G ++   T + ++  L + G
Sbjct: 302 FTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDG 350



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 17/205 (8%)

Query: 19  VTRSFTKSGAFPDE-------------PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC 65
           +  +F K+G  P+              P +  Y+ +++A       +    L+ K   + 
Sbjct: 482 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 541

Query: 66  CFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122
              +  T+N +      ++ +S   ++  +L+   +  P   +Y+TLI   C    ID+A
Sbjct: 542 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSN-HRLIPDAVSYNTLISACCYRGNIDKA 600

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           L +   M + G   +  T+H ++S L    R+ E   L + M +  V P    +N ++ A
Sbjct: 601 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEA 660

Query: 183 YCFKGNLTATSGVLKKMEEEKLGAD 207
           Y   GN      + K+M +++   D
Sbjct: 661 YSKYGNEIKAEDLRKEMLQKRNNHD 685



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 11/145 (7%)

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL-GADARTYDALVLGACRAGRVEEAFV 229
           PD  A+N  + A    G+L    G+L++M  +     +A +Y+ ++ G  RAGR  +A  
Sbjct: 158 PDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVE 217

Query: 230 LLRRMVDDG---QSVLYSTY--AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           +   M +       + Y+T    H+ G  L  G+   +++  MVC G  +K +   +  L
Sbjct: 218 VFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF---SLRDQMVCHG--LKPNAITYNVL 272

Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
            S L    R  E + +L EM  + +
Sbjct: 273 LSGLCRAGRMGETSALLDEMASQKM 297


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 124/289 (42%), Gaps = 27/289 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ ++N    E  ++  R  LN+ +         ++ F  +T +  +VL  LC  
Sbjct: 213 PNIVTYNVIINGMCREGRVDDAREFLNRLS---------SYGFQPDTVSYTTVLKGLCAA 263

Query: 93  LARLD-----------KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
               D              P +  +D L+   C+   ++ A++V++ M+  G   +    
Sbjct: 264 KRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLC 323

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + +++ + +  R+++A+  +  M     SPD  +Y  +L   C          +LK+M  
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 383

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           +    +  T++  +   C+ G +E+A +L+ +M + G  V   TY  ++      G    
Sbjct: 384 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 443

Query: 262 AVK--FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           A++  + M C     K +T  + +L + L   ER + A  +L EM ++D
Sbjct: 444 ALELFYSMPC-----KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD 487



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 7/228 (3%)

Query: 82  SLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +LS+L D+      L +G  P    Y  L+  +CK     +A+ V+D M   G   + +T
Sbjct: 164 ALSLLDDM------LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVT 217

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ I++ + R  R+++A   +  +      PD  +Y  +L   C          +  +M 
Sbjct: 218 YNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 277

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E+    +  T+D LV   CR G VE A  +L +M   G +   +    V+  + + G   
Sbjct: 278 EKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 337

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
            A +F+   G      DT  + ++   L   ER+ +A  +LKEM +++
Sbjct: 338 DAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKN 385



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 3/163 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+   C   ++D AL +   M       + IT+  +L+ L   +R++ A  L+  M 
Sbjct: 428 YNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEML 484

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +   +P++  +N L++ +C KG +     ++++M E     +  TY+ L+ G       E
Sbjct: 485 QKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSE 544

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           EA  LL  +V +G S    TY+ ++G L R     +A+K   +
Sbjct: 545 EALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHI 587



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+  LC  +++D A  ++  M +     + +TF+ ++S   +   M+EA  L
Sbjct: 455 PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIEL 514

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M E   +P+L  YN LL       N      +L  +    +  D  TY +++    R
Sbjct: 515 VEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSR 574

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             RVEEA  +   + D G       Y  ++ AL +      A+ F
Sbjct: 575 EDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDF 619



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 87/194 (44%), Gaps = 16/194 (8%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           V++ +C+   R+D  F            P   +Y T++  LC+ ++ ++A  ++  M   
Sbjct: 326 VINTICKQ-GRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 384

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
               + +TF+  + +L +   +E+A  L+E M E     ++  YN L+  +C +G + + 
Sbjct: 385 NCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 444

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +   M       +  TY  L+ G C A R++ A  LL  M+    +    T+  ++  
Sbjct: 445 LELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSF 501

Query: 253 LLRLGYYAQAVKFV 266
             + G   +A++ V
Sbjct: 502 FCQKGLMDEAIELV 515



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 6/169 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKID---EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           P  S+ +    RL +L   D   EA R+VD     G          ++  L R  R  +A
Sbjct: 38  PSASSPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDA 97

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             ++   +    + D+ AYN L+  YC  G L A   ++  M    +  DA TY  ++ G
Sbjct: 98  ARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRG 154

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            C  GRV EA  LL  M+  G      TY  ++ A+ +   + QA++ +
Sbjct: 155 LCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVL 203



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 2/213 (0%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
           + P +P +  Y  L+    +   L+    LL +  +  C     TFN + +      ++ 
Sbjct: 450 SMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMD 509

Query: 88  DLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           +    + ++ + G  P    Y+TL+  +      +EAL ++  +   G     +T+  I+
Sbjct: 510 EAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSII 569

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            VL+R  R+EEA  +  +++++ + P    YN +L A C + N          M      
Sbjct: 570 GVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCM 629

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            +  TY  L+ G      ++E   LLR +   G
Sbjct: 630 PNELTYITLIEGLANEDFLKETRDLLRELCSRG 662



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 8/226 (3%)

Query: 88  DLCRTLARLDKGFPRKSAYDT-----LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
           DL      +D+   R  A D      LI  LC+  +  +A RV+      G  +    ++
Sbjct: 58  DLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYN 117

Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
            +++   R  +++ A  L+  M    V+PD   Y  ++   C +G +     +L  M   
Sbjct: 118 TLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 174

Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
                  TY  L+   C++    +A  +L  M   G +    TY  ++  + R G    A
Sbjct: 175 GCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 234

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
            +F+        + DT  + ++   L   +R+ +   +  EM +++
Sbjct: 235 REFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 280


>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 766

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 1/201 (0%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TLI   C L  I++A+   D M E G    A  ++ ++S L + +R  +A  ++E +
Sbjct: 478 TYMTLIHACCSLSNIEKAMHWFDKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKL 537

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           +E   S DL AYN L+  +C K N      +L  ME+E +  D+ TY+ L+    +    
Sbjct: 538 REGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDF 597

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD-IKLDTELFGS 283
           E    ++ +M +D      +TY  V+ A   +G   +A+K     G R  +  +T ++  
Sbjct: 598 ESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNI 657

Query: 284 LGSKLIGLERFNEANFILKEM 304
           L +    L  F +A  + +EM
Sbjct: 658 LINAFSKLGNFGQALSLKEEM 678



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 113/230 (49%), Gaps = 15/230 (6%)

Query: 86  LSDLCRTLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           LS++ + +   DK       P    Y  LI  LC++++  +A+RVV+ + EGGF L  + 
Sbjct: 489 LSNIEKAMHWFDKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLREGGFSLDLLA 548

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ ++ +       E+ + ++  M++  + PD   YN L++ +    +  +   ++++M 
Sbjct: 549 YNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQMR 608

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLR----RMVDDGQSVLYSTYAHVMGALLRL 256
           E++L     TY A++   C  G + EA  L +    R   +  +V+Y+    ++ A  +L
Sbjct: 609 EDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNI---LINAFSKL 665

Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
           G + QA+        + ++ + E + +L      L+  N+A  +LK M++
Sbjct: 666 GNFGQALSLKEEMKMKMVRPNVETYNAL---FKCLKEKNQAETLLKLMDE 712



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 7/196 (3%)

Query: 109 LIGRLCKLKKIDEALRVVDIM----AEGGFGLSA--ITFHPILSVLTRGKRMEEAWGLME 162
           LI  LCK +++DEAL+V + M     + G  + A  I F+ ++  L +  R++EA  L+ 
Sbjct: 335 LINTLCKSRRVDEALQVFEQMCGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLV 394

Query: 163 VMK-EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
            MK E R  P+   YN L+  YC  G L     V+ +M+E+ +  D  T + +V G CR 
Sbjct: 395 RMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRH 454

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELF 281
             +  A +    M  +G      TY  ++ A   L    +A+ +           D +++
Sbjct: 455 HGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWFDKMLEAGCSPDAKIY 514

Query: 282 GSLGSKLIGLERFNEA 297
            +L S L  + R ++A
Sbjct: 515 YALISGLCQVRRDHDA 530



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 5/206 (2%)

Query: 51  LETVRYLLNKRARDCCFNTANTFNFITNTENSLSV--LSDLCRTLARL---DKGFPRKSA 105
           L+    +  KR  D     A++ +F T  +    V  L +    L R+   ++  P    
Sbjct: 349 LQVFEQMCGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKMEERCVPNTVT 408

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ LI   C+  K++ A  VV  M E G     +T + I+  + R   +  A      M+
Sbjct: 409 YNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDME 468

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +  V  ++  Y  L+ A C   N+        KM E     DA+ Y AL+ G C+  R  
Sbjct: 469 KEGVKGNVVTYMTLIHACCSLSNIEKAMHWFDKMLEAGCSPDAKIYYALISGLCQVRRDH 528

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMG 251
           +A  ++ ++ + G S+    Y  ++G
Sbjct: 529 DAIRVVEKLREGGFSLDLLAYNMLIG 554



 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 11/164 (6%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++   GRL   +KI   + ++   +  G   +++     +S L +  R   AW ++  + 
Sbjct: 230 HEVWKGRLLTEEKI---IGLISRFSSHGVSPNSVWLTRFISSLCKNARTNAAWDILSDLM 286

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           + +   +   +N LL+      N+   + ++ KM+E K+  D  T   L+   C++ RV+
Sbjct: 287 KNKAPLEAPPFNALLSCLGRNMNIGRMNALVLKMDEMKIRPDVVTLGILINTLCKSRRVD 346

Query: 226 EAFVLLRRM----VDDGQSVLYSTYAH---VMGALLRLGYYAQA 262
           EA  +  +M     DDG +V+ +   H   ++  L ++G   +A
Sbjct: 347 EALQVFEQMCGKRTDDG-NVIKADSIHFNTLIDGLCKVGRLKEA 389



 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 1/139 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TLI    K K  +   R+++ M E     +  T+  ++        + EA  L
Sbjct: 579 PDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEALKL 638

Query: 161 MEVMK-EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            + M    +V+P+   YN L+ A+   GN      + ++M+ + +  +  TY+AL     
Sbjct: 639 FKDMGLRSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLK 698

Query: 220 RAGRVEEAFVLLRRMVDDG 238
              + E    L+  MV+  
Sbjct: 699 EKNQAETLLKLMDEMVEQS 717



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 10/220 (4%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM--AEGGFGLSAITFHPILSVLTRGK 152
           RLD         + +I  L +   +D+A +V+D M   E  F  + IT   +L  + +G+
Sbjct: 177 RLDSNMKNSQVRNVVIDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKGR 236

Query: 153 RM--EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            +  E+  GL+       VSP+       +++ C      A   +L  + + K   +A  
Sbjct: 237 LLTEEKIIGLISRFSSHGVSPNSVWLTRFISSLCKNARTNAAWDILSDLMKNKAPLEAPP 296

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVMVC 269
           ++AL+    R   +     L+ +M +        T   ++  L +     +A++ F  +C
Sbjct: 297 FNALLSCLGRNMNIGRMNALVLKMDEMKIRPDVVTLGILINTLCKSRRVDEALQVFEQMC 356

Query: 270 GGRD-----IKLDTELFGSLGSKLIGLERFNEANFILKEM 304
           G R      IK D+  F +L   L  + R  EA  +L  M
Sbjct: 357 GKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRM 396


>gi|296087908|emb|CBI35191.3| unnamed protein product [Vitis vinifera]
          Length = 248

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 77/167 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y+TLI   CK++++D+A+ + + M       + +T++ ++  L    R+++A  L
Sbjct: 8   PNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIAL 67

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PDL  Y  LL   C   +L     +LK +E   L  D + Y  ++ G CR
Sbjct: 68  FREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCR 127

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
           AG +E+A  L   +   G      TY  +   L + G   +A K  M
Sbjct: 128 AGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFM 174



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 91/201 (45%), Gaps = 6/201 (2%)

Query: 67  FNT-ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
           +NT  N +  I   + ++ +  ++CR      K  P    Y+TLI  LC + ++ +A+ +
Sbjct: 13  YNTLINGYCKIERMDKAMYLFEEMCR-----QKLIPNTVTYNTLIHGLCHVGRLQDAIAL 67

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
              M   G     +T+  +L  L +   +++A  L++ ++   + PD+  Y  ++   C 
Sbjct: 68  FREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCR 127

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G L     +   +  + L  +  TY+ +  G C+ G ++EA  L   M ++  S    T
Sbjct: 128 AGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCT 187

Query: 246 YAHVMGALLRLGYYAQAVKFV 266
           Y  +    LR    ++A++ +
Sbjct: 188 YNTITQGFLRNNETSRAIQLL 208



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 67/142 (47%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
            +P++ +YN L+  YC    +     + ++M  +KL  +  TY+ L+ G C  GR+++A 
Sbjct: 6   CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAI 65

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            L R MV  GQ     TY  ++  L +  +  +A+  +    G ++  D +++  +   +
Sbjct: 66  ALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGM 125

Query: 289 IGLERFNEANFILKEMNKRDLK 310
                  +A  +   ++ + LK
Sbjct: 126 CRAGELEDARDLFSNLSSKGLK 147


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 115/277 (41%), Gaps = 3/277 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P     + L+N  G    LE    L  K     C     T+N +          +    
Sbjct: 336 KPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAA 395

Query: 92  TLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           +     KG    P    Y  LI   CK  +I++AL +++ M E GF      +  +++ L
Sbjct: 396 SWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSL 455

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            + KR E A  L   +KE         Y  ++  +   G L+    +  +ME+     D 
Sbjct: 456 GKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDV 515

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
             Y+AL+ G  RAG ++EA  LLR M ++G S   +++  ++  L R G   +A++    
Sbjct: 516 YAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAK 575

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
                IK D   + ++   L     F EA  +++EMN
Sbjct: 576 MKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMN 612



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 127/311 (40%), Gaps = 46/311 (14%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARD-CCFNTANTFNFITNTENSLSVLSDLC 90
           +P +  Y+ ++     E  LE V  + N+   D  CF    T++ + +    L       
Sbjct: 195 KPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAI 254

Query: 91  RTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           R    + +   +P    Y TL+G   KL K+++AL V+  M + G  L+  T+   +  L
Sbjct: 255 RLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGL 314

Query: 149 TRGKRMEEAW----------------------------GLMEV-------MKEIRVSPDL 173
            +  R+++A+                            G +EV       M+  +  P++
Sbjct: 315 GKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNV 374

Query: 174 TAYNYLLTA-YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
             YN ++ A +  K   +  +   +KM+   +   + TY  L+ G C+  R+E+A +LL 
Sbjct: 375 VTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLE 434

Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV----CG---GRDIKLDTELFGSLG 285
            M + G     + Y  ++ +L ++  Y  A +  +     CG    R   +  + FG  G
Sbjct: 435 EMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCG 494

Query: 286 SKLIGLERFNE 296
                ++ FNE
Sbjct: 495 RLSEAVDLFNE 505



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 68/155 (43%)

Query: 99  GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
           G      Y  +I    K  ++ EA+ + + M + G       ++ ++S + R   ++EA 
Sbjct: 476 GHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQ 535

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L+  M E   SPDL ++N +L      G       +  KM+   +  DA +Y+ ++   
Sbjct: 536 SLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCL 595

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
             AG  EEA  L+R M   G      TY  ++ A+
Sbjct: 596 SHAGLFEEAAKLMREMNLKGFEYNNITYTSILEAV 630



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 108/278 (38%), Gaps = 4/278 (1%)

Query: 34  TSAYYDDLVNAAGHERDLE---TVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90
           +S Y  ++V   G  + +    +V Y +  R       T N+   +   E  L  + ++ 
Sbjct: 162 SSVYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIY 221

Query: 91  RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
             +      FP    Y  LI    KL   D A+R+ D M E G   +A  +  +L +  +
Sbjct: 222 NEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFK 281

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
             ++E+A  +++ MK+   +  +  Y   +      G +     V   M ++    D   
Sbjct: 282 LDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVL 341

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA-QAVKFVMVC 269
            ++L+    + GR+E    L R+M          TY  V+ AL      A +A  +    
Sbjct: 342 INSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKM 401

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
            G  I   +  +  L        R  +A  +L+EM+++
Sbjct: 402 KGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEK 439


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 121/275 (44%), Gaps = 23/275 (8%)

Query: 52  ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-----KSAY 106
           E V  L N+  R+C          +T    + S+L      + RL+ GF       KS +
Sbjct: 73  ELVVSLFNRMIRECTIK-------VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGW 125

Query: 107 -------DTLIGRLCKLKKIDEALRV-VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
                  + L+  LC  K++ EA+ + +  M E G     ++++ +L      KR EEA 
Sbjct: 126 RVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEAL 185

Query: 159 GLMEVMKEIR---VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            L+ +M + +     P++ +Y  ++  +  +G +     +  +M +  +  +  TY  ++
Sbjct: 186 ELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVI 245

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
            G C+A  V+ A  + ++M+D G      TY  ++   L +G + + V+ +       +K
Sbjct: 246 DGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLK 305

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            D   +GSL + L    R  EA F    M ++ +K
Sbjct: 306 PDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIK 340



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    +++L+  LC + K ++A      M   G     + F+ IL  L    ++ +A  L
Sbjct: 446 PNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRL 505

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +++M+ +   PD+ +Y  L+  +C  G +   +  L  M    L  D  TY+ L+ G CR
Sbjct: 506 IDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCR 565

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           AGR+++A+ + R M+ +G +    TY+ ++  L     +++A
Sbjct: 566 AGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEA 607



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 1/187 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L++G  P    ++T++  LC   ++ +A R++D+M   G     I++  ++       R+
Sbjct: 475 LNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRI 534

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +EA   ++VM  + + PD   YN LL  YC  G +    GV ++M    +     TY  +
Sbjct: 535 DEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTI 594

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           + G     R  EA  L   M+  G+      Y  ++  L +     +A K       +D 
Sbjct: 595 LHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDF 654

Query: 275 KLDTELF 281
           +L+   F
Sbjct: 655 QLEITTF 661



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 2/216 (0%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
           +T+N + +   S+    ++ R L  +   G  P    Y +L+  LC   +  EA    D 
Sbjct: 274 DTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDS 333

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   +   +  ++        + E   L+ +M E  +SPD   +N + TAY  K  
Sbjct: 334 MIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAM 393

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
           +     +  KM+++ L  D   + AL+   C+ GRV++A +   +M+++G +     +  
Sbjct: 394 IDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNS 453

Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++  L  +  + +A +F      + I+ D   F ++
Sbjct: 454 LVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTI 489



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 1/210 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +DKG  P    Y+ LI     + K  E +R+++ M+  G      T+  +L+ L    R 
Sbjct: 265 IDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC 324

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA    + M    + P++  Y  L+  Y  KG L+    +L  M E  L  D   ++ +
Sbjct: 325 REARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
                +   ++EA  +  +M   G S     +  ++ AL +LG    AV          +
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGV 444

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304
             +  +F SL   L  ++++ +A     EM
Sbjct: 445 APNIFVFNSLVYGLCTVDKWEKAKEFYFEM 474



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 106/279 (37%), Gaps = 9/279 (3%)

Query: 33  PTSAYYDDLV----NAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN--TENSLSVL 86
           P    Y+ L+    N    E  LE +  + + + R C  N  +    I    TE  +   
Sbjct: 163 PDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKA 222

Query: 87  SDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
            +L   L  +D+G  P    Y T+I  LCK + +D A  V   M + G      T++ ++
Sbjct: 223 YNL--FLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLI 280

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
                  + +E   ++E M    + PD   Y  LL   C  G           M  + + 
Sbjct: 281 HGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIK 340

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +   Y  L+ G    G + E   LL  MV++G S  +  +  +  A  +     +A+  
Sbjct: 341 PNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHI 400

Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                 + +  D   FG+L   L  L R ++A     +M
Sbjct: 401 FNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQM 439



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 72/157 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y TLIG  C + +IDEA + +D+M   G      T++ +L    R  R+++A+G+
Sbjct: 516 PDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGV 575

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    ++P +  Y+ +L         +    +   M       +   Y+ ++ G  +
Sbjct: 576 FREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSK 635

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
              V+EAF L + +      +  +T+  ++GAL + G
Sbjct: 636 NNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSG 672



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 85/209 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y T+I       ++D+A  +   M + G   + +T+  ++  L + + ++ A G+
Sbjct: 201 PNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGV 260

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M +  V PD   YN L+  Y   G       +L++M    L  D  TY +L+   C 
Sbjct: 261 FQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCN 320

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  EA      M+  G     + Y  ++      G  ++    + +     +  D  +
Sbjct: 321 NGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHI 380

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F  + +        +EA  I  +M ++ L
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQGL 409



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 67/160 (41%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++  L K   +DEA ++   +    F L   TF+ ++  L +  R E+A  L   + 
Sbjct: 626 YNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATIS 685

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+  Y  +      +G L     +   ME+     ++R  +ALV      G + 
Sbjct: 686 SYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDIT 745

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            A   L ++ +   S+  ST A ++  L R  Y+  A   
Sbjct: 746 RAGAYLSKLDEKNFSLEASTTAMLISLLSRDEYHHHATSL 785


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 93  LARLDKGFPRKSA------------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           L  LD+GF  KSA            Y  LI  LCK  K+D+A  + D M   G   + +T
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 249

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F  ++    +  R++ A  + + M    + PDL  YN L+   C KG+L     ++ +M 
Sbjct: 250 FTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMS 309

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
            + L  D  TY  L+ G C+ G ++ AF   +RM+     +    Y  ++  L + G   
Sbjct: 310 MKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSV 369

Query: 261 QAVKFV 266
            A K +
Sbjct: 370 DAEKML 375



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI   CK   +D A +    M +G   L  + +  ++S L +  R  +A  +
Sbjct: 315 PDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +  M  + + PD+  Y  ++  +C KG++   S +LK+M+         TY+ L+ G
Sbjct: 375 LREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 20/228 (8%)

Query: 44  AAGHERDLETVRYLLNKRARDCCFNTANTF-------NFITNTENSLSVLSDLCRTLARL 96
           A+G + D+ T   L+N   ++   + AN           I N     +++   C+   R+
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKN-GRV 263

Query: 97  DKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
           D               P    Y+TLI  LCK   + +A  ++D M+  G      T+  +
Sbjct: 264 DLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTL 323

Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
           +    +   ++ A+   + M +  +  D  AY  L++  C +G       +L++M    L
Sbjct: 324 IDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             D  TY  ++   C+ G V +   LL+ M  +G      TY  +M  
Sbjct: 384 KPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 49/116 (42%)

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           T   +L  L + +  +  WG  E + E      L  +N L+  +C  G++     V   +
Sbjct: 109 TCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            +  L     +Y+ L+ G  R G ++E F L   M+  G      TY+ ++  L +
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 109/260 (41%), Gaps = 13/260 (5%)

Query: 59  NKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSA------------Y 106
           N R     F+    +    +  +  +++S   R L  LD+GF  KSA            Y
Sbjct: 140 NIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIR-LGDLDEGFRLKSAMHASGVQPDVYTY 198

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
             LI  LCK  K+DEA  + D M   G     +TF  ++    +  R++ A  + + M  
Sbjct: 199 SVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLS 258

Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
             + PDL  YN L+   C KGBL     ++ +M  +    D  TY  L+ G C+ G ++ 
Sbjct: 259 QSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDT 318

Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
           AF   +RM+ +   +    Y  ++  L + G    A K +        K DT  +  + +
Sbjct: 319 AFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIIN 378

Query: 287 KLIGLERFNEANFILKEMNK 306
           +          + +LKEM +
Sbjct: 379 EFCKKGDVWTGSKLLKEMQR 398



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 5/170 (2%)

Query: 96  LDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+ G+P     ++ L+ R CK   I  A  V D + + G   S ++++ ++S   R   +
Sbjct: 117 LECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDL 176

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           +E + L   M    V PD+  Y+ L+   C +  +   + +  +M    L     T+  L
Sbjct: 177 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTL 236

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVMGALLRLGYYAQA 262
           + G C+ GRV+ A  + ++M+   QS+L    TY  ++  L + G   QA
Sbjct: 237 IDGHCKNGRVDLAMEIYKQMLS--QSLLPDLITYNTLIYGLCKKGBLKQA 284



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 53/117 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P K  Y TLI   CK   +D A      M +    L  + +  ++S L +  R  +A  +
Sbjct: 298 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 357

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           +  M  +   PD   Y  ++  +C KG++   S +LK+M+ +       TY+ L+ G
Sbjct: 358 LREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 65/153 (42%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TLI  LCK   + +A  ++  M+  G     IT+  ++    +   ++ A+ 
Sbjct: 262 LPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFE 321

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
             + M +  +  D  AY  L++  C +G       +L++M       D RTY  ++   C
Sbjct: 322 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFC 381

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
           + G V     LL+ M  DG      TY  +M  
Sbjct: 382 KKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 56/135 (41%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +A+    +  E  F +   T   +L  L + K  +  WG  + + E      L  +N L+
Sbjct: 73  DAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYQEILECGYPASLYFFNILM 132

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             +C +GN+     V   + +  L     +Y+ L+ G  R G ++E F L   M   G  
Sbjct: 133 HRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQ 192

Query: 241 VLYSTYAHVMGALLR 255
               TY+ ++  L +
Sbjct: 193 PDVYTYSVLINGLCK 207



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 60/149 (40%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L R  K +        ++  L KLK           + E G+  S   F+ ++    
Sbjct: 77  CYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYQEILECGYPASLYFFNILMHRFC 136

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   +  A  + + + +  + P + +YN L++ Y   G+L     +   M    +  D  
Sbjct: 137 KEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVY 196

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+ G C+  +++EA  L   M+  G
Sbjct: 197 TYSVLINGLCKEXKMDEANELFDEMLVXG 225


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 10/259 (3%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP     + L++  G  R  +    +L +  +  C  +  T+N + ++     +L +  +
Sbjct: 279 EPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQ 338

Query: 92  TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL- 148
               ++ KG  P    Y TL+  L +  KID A+   + M   G   +  T++ ++ +  
Sbjct: 339 LKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHG 398

Query: 149 TRGKRMEEAWGLMEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            RGK  E    +M V  EIR +   PD+  +N LL  +   G  T  SGV K+M++    
Sbjct: 399 VRGKFPE----MMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYV 454

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            +  TY +L+    R G  ++A  + +RM++ G     STY  V+ AL R G + QA K 
Sbjct: 455 PERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKL 514

Query: 266 VMVCGGRDIKLDTELFGSL 284
                  D + D   + SL
Sbjct: 515 FAEMENLDSRPDELSYSSL 533



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 13/191 (6%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK----GFP-RKSAYDTLIGRLCKLKKI-DEALRV 125
           T+N + +  + ++V       LA +D     G P  +  Y+TLI   C+ + +  EA +V
Sbjct: 213 TYNVVLHVYSKIAV--PWKEVLALVDSMRKDGIPLDRYTYNTLIS-CCRRRALYKEAAKV 269

Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
            D M   GF    +T + +L V  + +R +EA G+++ M++    P +  YN L+++Y  
Sbjct: 270 FDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVK 329

Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            G L   + + ++ME + +  D  TY  LV G  RAG+++ A      M+ +G      T
Sbjct: 330 DGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCT 389

Query: 246 YAHVMGALLRL 256
           Y     AL++L
Sbjct: 390 Y----NALIKL 396



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
           ++ G+   +KK++E   ++ +M E    LS  T++ ++ + +R    E+   ++  +K  
Sbjct: 605 SIYGKNGMVKKVEE---ILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSS 661

Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
           R  PD  +YN ++ AY  KG +   S +  +M+   L  D  TY+  V         EEA
Sbjct: 662 RARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEA 721

Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
             L+R MV  G      TY  ++      G  A    F+
Sbjct: 722 IDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFI 760



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P +  Y +LI    +    D+A+ +   M E G      T++ +LS L RG R E+A  L
Sbjct: 455 PERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKL 514

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M+ +   PD  +Y+ LL AY     L     + + +  E++ +       LVL   +
Sbjct: 515 FAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSK 574

Query: 221 AGRV---EEAFVLLRR 233
              +   E+AF+ LRR
Sbjct: 575 VNNLSDTEKAFLELRR 590



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 61/143 (42%)

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           E L +VD M + G  L   T++ ++S   R    +EA  + + M+     PD    N LL
Sbjct: 230 EVLALVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLL 289

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
             Y          GVLK+ME+        TY++L+    + G +EEA  L   M   G  
Sbjct: 290 DVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIE 349

Query: 241 VLYSTYAHVMGALLRLGYYAQAV 263
               TY  ++  L R G    A+
Sbjct: 350 PDVITYTTLVSGLDRAGKIDAAI 372



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 72/174 (41%), Gaps = 9/174 (5%)

Query: 46  GHERDLETVRYLLNKRARDCCFNTANT----FNFITNTENSLSVLSDLCRTLARLDKGFP 101
           G  + +E +  L+ + + +    T N+    ++ + + E   ++L+++  + AR     P
Sbjct: 611 GMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRAR-----P 665

Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
            + +Y+T+I    +  ++ EA R+   M   G     +T++  +         EEA  L+
Sbjct: 666 DRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLV 725

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
             M      P+   YN +L  YC  G +      +  + E   G   R    L+
Sbjct: 726 RYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLPELHPGISKREQQRLL 779


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 100/211 (47%), Gaps = 4/211 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P+   Y  LV A   ++   ++  L++K  ++        FN I N  +    L    +
Sbjct: 374 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 433

Query: 92  TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIM-AEGGFGLSAITFHPILSVL 148
              ++ +    P  S ++TLI    K+ K++E+ R++D+M  +     +  T + ++   
Sbjct: 434 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAW 493

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN-LTATSGVLKKMEEEKLGAD 207
              +++EEAW ++  M+   V PD+  +N L  AY   G+  TA   ++ +M   K+  +
Sbjct: 494 CNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPN 553

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            RT   +V G C  G++EEA     RM + G
Sbjct: 554 VRTCGTIVNGYCEEGKMEEALRFFYRMKELG 584



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 1/168 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+  L + K     L ++  + + G     I F+ I++  +    +++A  +
Sbjct: 375 PSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKI 434

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGAC 219
            E MKE    P  + +N L+  Y   G L  +S +L  M  +E L  + RT + LV   C
Sbjct: 435 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 494

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
              ++EEA+ ++ +M   G      T+  +  A  R+G    A   ++
Sbjct: 495 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMII 542



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 64/129 (49%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           L+  L +  +  EA  + + + E G   S IT+  +++ LTR K       L+  +++  
Sbjct: 348 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 407

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           + PD   +N ++ A    GNL     + +KM+E      A T++ L+ G  + G++EE+ 
Sbjct: 408 LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESS 467

Query: 229 VLLRRMVDD 237
            LL  M+ D
Sbjct: 468 RLLDMMLRD 476



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 97/243 (39%), Gaps = 4/243 (1%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE---NSLSVLSD 88
           +P     + LV A  ++R +E    ++ K           TFN +        S     D
Sbjct: 480 QPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAED 539

Query: 89  LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           +       +K  P      T++   C+  K++EALR    M E G   +   F+ ++   
Sbjct: 540 MIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGF 599

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
                M+    ++++M+E  V PD+  ++ L+ A+   G++     +   M E  +  D 
Sbjct: 600 LNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDI 659

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVM 267
             +  L  G  RAG  E+A  +L +M   G       Y  ++      G   +A++ +  
Sbjct: 660 HAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKK 719

Query: 268 VCG 270
           +CG
Sbjct: 720 MCG 722



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 111/281 (39%), Gaps = 8/281 (2%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P +  ++ ++NA+    +L+    +  K     C  TA+TFN +      +  L +  R
Sbjct: 409 KPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSR 468

Query: 92  TLA---RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
            L    R +   P     + L+   C  +KI+EA  +V  M   G     +TF+ +    
Sbjct: 469 LLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAY 528

Query: 149 TR-GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
            R G        ++  M   +V P++     ++  YC +G +        +M+E  +  +
Sbjct: 529 ARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPN 588

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV- 266
              +++L+ G      ++    ++  M + G      T++ +M A   +G   +  +   
Sbjct: 589 LFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYT 648

Query: 267 -MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
            M+ GG  I  D   F  L           +A  IL +M K
Sbjct: 649 DMLEGG--IDPDIHAFSILAKGYARAGEPEKAEQILNQMRK 687



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
           ++ RG R +EA  +   + E    P L  Y  L+TA   + +  +   ++ K+E+  L  
Sbjct: 352 LIERG-RPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKP 410

Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           D   ++A++  +  +G +++A  +  +M + G     ST+  ++    ++G   ++ + +
Sbjct: 411 DTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL 470


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 114/248 (45%), Gaps = 8/248 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGH-ERDLETVRYLLNKRARDCCFNTAN 71
           +P++  + R    SG  PDE T +   D++  AG  +  +E V+ +      + C  ++ 
Sbjct: 175 LPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEM----DYNNCKPSSF 230

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
            ++ + +T    + + D   T   +++       +AY+ LI   CK  K+    RV+  M
Sbjct: 231 IYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDM 290

Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
              G   ++ T + I++ L      +EA+ +   M ++   PD+ +Y  ++  +C +  L
Sbjct: 291 DLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKV-CEPDVDSYTMIIKMFCGRKEL 349

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                + K M++++      T+  L+ G C+ G   +A VLL  M++ G     +T+  +
Sbjct: 350 DMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRL 409

Query: 250 MGALLRLG 257
              L++ G
Sbjct: 410 RHLLIKEG 417



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 35/245 (14%)

Query: 96  LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D G  P +  Y  ++  LCK  ++DEA+ +V  M       S+  +  ++       R+
Sbjct: 186 IDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRI 245

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           E+A      M+   V  D+ AYN L++A+C    +     VLK M+ + +  ++RT + +
Sbjct: 246 EDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNII 305

Query: 215 VLGACRAGRVEEAFVLLRRMVD------DGQSVL-------------------------- 242
           +      G  +EAF + RRM+       D  +++                          
Sbjct: 306 INSLIGRGETDEAFKIFRRMIKVCEPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQFV 365

Query: 243 --YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300
               T++ ++  L ++G   QA   +     + I+     FG L   LI   R +   F+
Sbjct: 366 PSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGRKDVLKFL 425

Query: 301 LKEMN 305
            ++MN
Sbjct: 426 QEKMN 430



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 118/296 (39%), Gaps = 34/296 (11%)

Query: 40  DLVNAAGHER--DLETVRYLLNKRARDC-------CFNTANTFNFITNTENSLSVLSDLC 90
           DLVNA  ++   ++E    ++ K AR          FN    +N   N      +LS LC
Sbjct: 77  DLVNAMRNKEILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALC 136

Query: 91  RTLA----------RLDKGFPRKSAYDTLI---GRLCKLKKIDEALRVVDIMAEGGFGLS 137
           ++              D+  P    Y  LI   GR   L K  E  R    M + G    
Sbjct: 137 KSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYRE---MIDSGCIPD 193

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
            +T+  ++ VL +  R++EA  +++ M      P    Y+ L+  Y  +  +        
Sbjct: 194 EVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFL 253

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +ME   + AD   Y+AL+   C+A +++  + +L+ M   G +    T   ++ +L+  G
Sbjct: 254 EMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRG 313

Query: 258 YYAQAVKF----VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
              +A K     + VC     + D + +  +     G +  + A  I K M K+  
Sbjct: 314 ETDEAFKIFRRMIKVC-----EPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQF 364


>gi|449446161|ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 93/209 (44%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           LD   P    Y+ L+   CKL K+D+  R++D MA  GF     T++ +L VL +G +  
Sbjct: 249 LDDHSPDILTYNVLLFSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPL 308

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L+  M+E+   P++  +  L+      GNL A      ++       D   Y  ++
Sbjct: 309 AALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMI 368

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
                AG+ E+A      M+  GQ     TY  ++     +G + +A   +     R  +
Sbjct: 369 TSFTEAGQHEKARAFFDEMIMKGQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCR 428

Query: 276 LDTELFGSLGSKLIGLERFNEANFILKEM 304
            +  ++ +L S L    +  EA+ ++K+M
Sbjct: 429 PNFLVYSTLVSYLRNAGKLGEAHKVIKQM 457



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 43/269 (15%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V   F KS  F   P    Y+ +++     +  + + ++ ++   D       T+N +  
Sbjct: 205 VVERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLF 264

Query: 79  TENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           +   L  L    R L  +  KGF P    Y+ L+  L K  K   AL +++ M E GFG 
Sbjct: 265 SSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGP 324

Query: 137 SAITFHPILSVLTRGKRM-----------------------------------EEAWGLM 161
           + + F  +++ L+R   +                                   E+A    
Sbjct: 325 NVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFF 384

Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
           + M      P++  YN ++  +C  G       +L +ME      +   Y  LV     A
Sbjct: 385 DEMIMKGQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRNA 444

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
           G++ EA  ++++MV++GQ      YAH+M
Sbjct: 445 GKLGEAHKVIKQMVENGQ------YAHLM 467



 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 57/143 (39%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           ++Y  ++    + ++     RV+D M E G+ ++A TF  ++         +        
Sbjct: 152 NSYHIIMKIFAECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIK 211

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
            K     P   +YN +L              V  +M  +    D  TY+ L+  +C+ G+
Sbjct: 212 SKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGK 271

Query: 224 VEEAFVLLRRMVDDGQSVLYSTY 246
           +++   LL  M   G S  + TY
Sbjct: 272 LDQFHRLLDEMARKGFSPDFHTY 294


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 124/289 (42%), Gaps = 27/289 (9%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y+ ++N    E  ++  R  LN+          +++ F  +T +  +VL  LC  
Sbjct: 244 PNIVTYNVIINGMCREGRVDDAREFLNR---------LSSYGFQPDTVSYTTVLKGLCAA 294

Query: 93  LARLD-----------KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
               D              P +  +D L+   C+   ++ A++V++ M+  G   +    
Sbjct: 295 KRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLC 354

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + +++ + +  R+++A+  +  M     SPD  +Y  +L   C          +LK+M  
Sbjct: 355 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 414

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
           +    +  T++  +   C+ G +E+A +L+ +M + G  V   TY  ++      G    
Sbjct: 415 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 474

Query: 262 AVK--FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           A++  + M C     K +T  + +L + L   ER + A  +L EM ++D
Sbjct: 475 ALELFYSMPC-----KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD 518



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 7/228 (3%)

Query: 82  SLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
           +LS+L D+      L +G  P    Y  L+  +CK     +A+ V+D M   G   + +T
Sbjct: 195 ALSLLDDM------LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVT 248

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           ++ I++ + R  R+++A   +  +      PD  +Y  +L   C          +  +M 
Sbjct: 249 YNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 308

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           E+    +  T+D LV   CR G VE A  +L +M   G +   +    V+  + + G   
Sbjct: 309 EKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 368

Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
            A +F+   G      DT  + ++   L   ER+ +A  +LKEM +++
Sbjct: 369 DAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKN 416



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ L+   C   ++D AL +   M       + IT+  +L+ L   +R++ A  L+  M 
Sbjct: 459 YNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEML 515

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           +   +P++  +N L++ +C KG +     ++++M E     +  TY+ L+ G  +    E
Sbjct: 516 QKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSE 575

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           EA  LL  +V +G S    TY+ ++G L R     +A+K   +
Sbjct: 576 EALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHI 618



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+  LC  +++D A  ++  M +     + +TF+ ++S   +   M+EA  L
Sbjct: 486 PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIEL 545

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M E   +P+L  YN LL       N      +L  +    +  D  TY +++    R
Sbjct: 546 VEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSR 605

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
             RVEEA  +   + D G       Y  ++ AL +      A+ F
Sbjct: 606 EDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDF 650



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 87/194 (44%), Gaps = 16/194 (8%)

Query: 85  VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
           V++ +C+   R+D  F            P   +Y T++  LC+ ++ ++A  ++  M   
Sbjct: 357 VINTICKQ-GRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 415

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
               + +TF+  + +L +   +E+A  L+E M E     ++  YN L+  +C +G + + 
Sbjct: 416 NCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 475

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +   M       +  TY  L+ G C A R++ A  LL  M+    +    T+  ++  
Sbjct: 476 LELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSF 532

Query: 253 LLRLGYYAQAVKFV 266
             + G   +A++ V
Sbjct: 533 FCQKGLMDEAIELV 546



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 2/213 (0%)

Query: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
           + P +P +  Y  L+    +   L+    LL +  +  C     TFN + +      ++ 
Sbjct: 481 SMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMD 540

Query: 88  DLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           +    + ++ + G  P    Y+TL+  + K    +EAL ++  +   G     +T+  I+
Sbjct: 541 EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSII 600

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
            VL+R  R+EEA  +  +++++ + P    YN +L A C + N          M      
Sbjct: 601 GVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCM 660

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
            +  TY  L+ G      ++E   LLR +   G
Sbjct: 661 PNELTYITLIEGLANEDFLKETRDLLRELCSRG 693



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 9/221 (4%)

Query: 94  ARL-DKGFPRKSAYDT-----LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           ARL D+   R  A D      LI  LC+  +  +A RV+      G  +    ++ +++ 
Sbjct: 94  ARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAG 153

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
             R  +++ A  L+  M    V+PD   Y  ++   C +G +     +L  M        
Sbjct: 154 YCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPS 210

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
             TY  L+   C++    +A  +L  M   G +    TY  ++  + R G    A +F+ 
Sbjct: 211 VVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLN 270

Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
                  + DT  + ++   L   +R+ +   +  EM +++
Sbjct: 271 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 311


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 88/197 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + ++I  LCK  ++ E   ++D+M + G   + +TF+ ++        MEEA+ L
Sbjct: 506 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 565

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M  I + P+   Y  L+  YC  G +     V + M  + +   +  Y  ++ G  +
Sbjct: 566 LDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQ 625

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           A R   A  +   M++ G +V   TY  V+G L R     +A   +      ++K D   
Sbjct: 626 ARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIIT 685

Query: 281 FGSLGSKLIGLERFNEA 297
           F  + S +  + R  EA
Sbjct: 686 FNIVISAMFKVGRRQEA 702



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 104/238 (43%), Gaps = 4/238 (1%)

Query: 75  FITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
           + T T++ L+ + ++   +  L KG  P K  ++ LI    +   +D+A+ + + M   G
Sbjct: 375 YATATDSCLADVHNIFNLM--LTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKG 432

Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
                +TF  ++S L R  R+++A      M +I V P    Y  L+   C  G L    
Sbjct: 433 MIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAK 492

Query: 194 GVLKKMEEEKLGADARTY-DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
            ++ +M  + +      Y  +++   C+ GRV E   ++  MV  GQ     T+  +M  
Sbjct: 493 ELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEG 552

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              +G   +A   +       I+ +  ++G+L        R ++A  + ++M  + +K
Sbjct: 553 YCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVK 610



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 90  CRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           C  L  +++G  P+    +++I  LCK+K++D+A  +V  M + G      T+  I+  L
Sbjct: 211 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 270

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
            + K M++A  ++E M E    P+   YN L+  Y   G    +  V K+M    +    
Sbjct: 271 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTV 330

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VLYSTYAH 248
              ++ +    + GR  EA  +   MV  G     + YST  H
Sbjct: 331 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLH 373



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 7/216 (3%)

Query: 95  RLDK-GFPRKSA-----YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
           R+D+   PR S      Y+ LI    ++ + D  L +V  + + G G    ++  I   +
Sbjct: 142 RMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFV 201

Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
             G+ +++A  L   M E  V P +   N ++   C    +     +++KM +  +  D 
Sbjct: 202 KDGE-VDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDL 260

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
            TY  ++ G C++  +++A  +L +MV+ G      TY  ++      G + ++V+    
Sbjct: 261 FTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ 320

Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
                +    +   S    L    R NEA  I   M
Sbjct: 321 MSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSM 356



 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 12/237 (5%)

Query: 33  PTSAYYDDLVNAAGHE------RDLETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSV 85
           P   Y+  ++N    E      +D+  +     +R     FN+    +  + N E + ++
Sbjct: 506 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 565

Query: 86  LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
           L  +           P    Y TL+   CK  +ID+AL V   M   G   +++ +  IL
Sbjct: 566 LDAMASIGIE-----PNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIIL 620

Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
             L + +R   A  +   M E   +  +  Y  +L   C        + +L+K+    + 
Sbjct: 621 HGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK 680

Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
            D  T++ ++    + GR +EA  L   +   G      TY+ ++  L++   Y +A
Sbjct: 681 FDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEA 737



 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 50/223 (22%)

Query: 84  SVLSDLCRTLARLDKG------------FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           S++ +LC+ +  +DK              P    Y  +I  LCK K +D+A RV++ M E
Sbjct: 230 SIIKELCK-MKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 288

Query: 132 GGFGLSAITFHPI-----------------------------------LSVLTRGKRMEE 156
            G   ++IT++ +                                   +  L +  R  E
Sbjct: 289 AGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNE 348

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN--LTATSGVLKKMEEEKLGADARTYDAL 214
           A  + + M      PD+ +Y+ +L  Y    +  L     +   M  + +  +   ++ L
Sbjct: 349 AKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNIL 408

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +    R G +++A ++   M + G      T+A V+ +L R+G
Sbjct: 409 INAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIG 451



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 7/208 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           +++L+V  D+      L KG  P    Y  ++  L + ++   A ++   M E G  +S 
Sbjct: 595 DDALTVFRDM------LHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSI 648

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T+  +L  L R    +EA  L+E +  + V  D+  +N +++A    G       +   
Sbjct: 649 HTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDA 708

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
           +    L  + +TY  ++    +    EEA  L   +   G +       H++  LL    
Sbjct: 709 ISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAE 768

Query: 259 YAQAVKFVMVCGGRDIKLDTELFGSLGS 286
            A+A  ++ + G  ++ L+      L S
Sbjct: 769 VAKASNYLSIIGENNLTLEASTISLLAS 796


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 6/184 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E+++S L D  + +       P   + +T++ + CK+  ID A     +M + G    + 
Sbjct: 254 EDAISFLHDSNKVVG------PSIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSF 307

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           +++ +L  L     M+EA G  + M++  V PD+  YN L   +   G ++    V++KM
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKM 367

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             + L  D  TY  L+ G C+ G +EEA  L +  +  G  +    Y  ++  L ++G  
Sbjct: 368 LLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRI 427

Query: 260 AQAV 263
            +A+
Sbjct: 428 EEAL 431



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 2/250 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   ++ L+N      DL   R +L          +  T+  + N    +  + ++   
Sbjct: 549 PSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHF 608

Query: 93  LARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  ++     P    Y  LI  LC+  K+ E+L++++ M   G    ++T++ I+    +
Sbjct: 609 LHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCK 668

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           GK + +A  L  +M      P    Y  L+ A C  G+L     ++  +E+  +     T
Sbjct: 669 GKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXT 728

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  ++   C  G+V +A     +M+  G  +    Y+ V+  L + G   +A  F ++  
Sbjct: 729 YMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMML 788

Query: 271 GRDIKLDTEL 280
              +  D E+
Sbjct: 789 SEGVTPDPEI 798



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I    +L  I EA+++   M E G   S +TF+ +++   R   + EA  ++EV++
Sbjct: 519 YNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIR 578

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P +  Y  L+ AYC  GN+      L +ME   +     TY  L+ G CR  ++ 
Sbjct: 579 LKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMH 638

Query: 226 EAFVLLRRMVDDG---QSVLYST 245
           E+  LL  M   G    SV Y+T
Sbjct: 639 ESLQLLEYMYAKGLLPDSVTYNT 661



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 65/127 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C++  I+EAL++       GF L+ I ++ +LS L +  R+EEA  L
Sbjct: 374 PDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTL 433

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M+ +R+ PD   Y+ L+   C +G +     + ++M  ++         A++LG  +
Sbjct: 434 FDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFK 493

Query: 221 AGRVEEA 227
            G + EA
Sbjct: 494 NGNISEA 500



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 66/161 (40%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           RL + FP   A   ++  L K   I EA    D           + ++ ++    R   +
Sbjct: 473 RLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGI 532

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L   M E  ++P +  +N L+  +C +G+L     +L+ +  + L     TY  L
Sbjct: 533 AEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTL 592

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +   C  G ++E F  L  M  +     + TY  ++  L R
Sbjct: 593 MNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCR 633



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 2/216 (0%)

Query: 99  GFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           G P+     + LI  LC+  K+++A+  +   +    G S ++ + I+S   +   ++ A
Sbjct: 232 GAPQSECTTSILIHGLCEQSKLEDAISFLHD-SNKVVGPSIVSINTIMSKFCKVGLIDVA 290

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
                +M +  +  D  +YN LL   C  G++    G    ME+  +  D  TY+ L  G
Sbjct: 291 RSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKG 350

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
               G +  A  ++++M+  G +    TY  ++    ++G   +A+K       R  KL+
Sbjct: 351 FLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLN 410

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
              +  L S L  + R  EA  +  EM    L+  F
Sbjct: 411 VIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDF 446



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 1/174 (0%)

Query: 96  LDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L +GF      Y+ L+  LCK+ +I+EAL + D M         I +  ++  L +   +
Sbjct: 403 LSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFV 462

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A+ L E M+  R  P   A   +L      GN++             L  D   Y+ +
Sbjct: 463 QRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIM 522

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           + G  R   + EA  L  +M++ G +    T+  ++    R G   +A K + V
Sbjct: 523 IDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEV 576



 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL      L  +  A +VV  M   G     +T+  ++    +   +EEA  L
Sbjct: 339 PDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKL 398

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +         ++  YN LL+  C  G +     +  +ME  +L  D   Y  L+ G C+
Sbjct: 399 RQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCK 458

Query: 221 AGRVEEAFVLLRRM 234
            G V+ A+ L  +M
Sbjct: 459 EGFVQRAYQLYEQM 472


>gi|414868297|tpg|DAA46854.1| TPA: hypothetical protein ZEAMMB73_384018 [Zea mays]
          Length = 504

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 6/190 (3%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL-SVLTRGKRMEEAWG 159
           P +  Y+T++  LCK  ++ +A R+V+ M   G   + ITF+ ++ S +T G   E A  
Sbjct: 280 PNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGVTPNTITFNTLIHSYVTLGDN-EVAMK 338

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + E M +  +S DL  YN L+   C +G     S +++++   KL  +A T+ AL++G C
Sbjct: 339 MHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQLVQELCAAKLEPNASTFSALIIGQC 398

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV----KFVMVCGGRDIK 275
           +    E A  LL  M   G    Y TY+ ++    +   +  A+      +M C   D  
Sbjct: 399 KKQNPERALDLLNAMKKAGFQPNYYTYSILISTFSKNKDFEGAIDVLKDMLMRCIAPDKA 458

Query: 276 LDTELFGSLG 285
           L  E F  L 
Sbjct: 459 LLHEFFEGLS 468



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKK-IDEALRVVDI 128
           T N +   + +L  + D  + L  +   GF R +A ++TLI   C     ++  LR+ + 
Sbjct: 213 TVNMVMRAKCALGRVVDAAQLLDEMPCWGFSRTAASFNTLIAAYCHDSGGMETVLRLKER 272

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   G   + +T++ I+  L +  RM +A  ++  M+   V+P+   +N L+ +Y   G+
Sbjct: 273 MEREGLVPNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGVTPNTITFNTLIHSYVTLGD 332

Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
                 + ++M +  L AD  TY+AL+LG C  G+  +A  L++ +
Sbjct: 333 NEVAMKMHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQLVQEL 378



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 4/220 (1%)

Query: 94  ARLDKGFPRKS---AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           ARL  G  R +   A D L     + KK+  A      M   G   +  + +  +S   R
Sbjct: 129 ARLAAGTQRAAVVPAIDVLFSSCARDKKLSWATLTYRAMRAHGMFPTVESCNVFISGALR 188

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
            +R E A      M+  RVSP++   N ++ A C  G +   + +L +M        A +
Sbjct: 189 LRRPEIAISFFREMRRCRVSPNVYTVNMVMRAKCALGRVVDAAQLLDEMPCWGFSRTAAS 248

Query: 211 YDALVLGACR-AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
           ++ L+   C  +G +E    L  RM  +G      TY  ++  L + G   QA + V   
Sbjct: 249 FNTLIAAYCHDSGGMETVLRLKERMEREGLVPNEVTYNTIVHGLCKEGRMHQARRIVNEM 308

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             + +  +T  F +L    + L     A  + +EM K  L
Sbjct: 309 RVKGVTPNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGL 348


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 27/231 (11%)

Query: 43  NAAGHE--RDLETVRYLLNKRARDCCFNTANTFNFITN-----------TENSL------ 83
           NA G E   DL T   L+N   R  CF  ++  +++             T +SL      
Sbjct: 113 NAEGIEISPDLYTCNILVNCFCR--CFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCL 170

Query: 84  -SVLSDLCRTLARLDK-GFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
            + + D      +++K G  R    DT LI  LCK + +  AL V+  M + G   + +T
Sbjct: 171 SNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVT 230

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           +  +++ L +  R+ +A   +  M   +++P++  ++ L+ AY  +G L+    V K M 
Sbjct: 231 YSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMI 290

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           +  +  +  TY +L+ G C   RV+EA  +L  M+  G     V YST A+
Sbjct: 291 QMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLAN 341



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +LI  LC   ++DEA++++D+M   G   + +T+  + +   +  R+++   L
Sbjct: 296 PNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKL 355

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M +  V+ +  + N L+  Y   G +    GV   M    L  + R+Y+ ++ G   
Sbjct: 356 LDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFA 415

Query: 221 AGRVEEA---FVLLRRMVDDGQSVLYSTYAHVM 250
            G VE+A   F  +++  +D   + Y+   H M
Sbjct: 416 NGEVEKALSRFEHMQKTRNDLDIITYTIMIHGM 448



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/162 (20%), Positives = 73/162 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL     K  ++D+ ++++D M + G   + ++ + ++    +  +++ A G+
Sbjct: 331 PNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGV 390

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M    + P++ +YN +L      G +       + M++ +   D  TY  ++ G C+
Sbjct: 391 FGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCK 450

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           A  V+EA+ L  ++        +  Y  ++  L R G   +A
Sbjct: 451 ACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEA 492



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME---EAWGLMEVMKEIRVSPDLT 174
           K D+A  +  +MA      S + F+ +L+ + + +  +     W  +E  + I +SPDL 
Sbjct: 65  KFDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLY 124

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
             N L+  +C     ++    L KM +  +  D  T  +LV G C +  +++A  +  +M
Sbjct: 125 TCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQM 184



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 14/209 (6%)

Query: 32  EPTSAYYDDLVNA-AGHERDLETVRYLLNKRARDCCFNT------ANTFNFITNTENSLS 84
           +P    Y  L+     H R  E ++ L    ++ C  N       AN F   +  ++ + 
Sbjct: 295 DPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIK 354

Query: 85  VLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
           +L D+ +      +G    + + +TLI    +  KID AL V   M   G   +  +++ 
Sbjct: 355 LLDDMPQ------RGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNI 408

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           +L+ L     +E+A    E M++ R   D+  Y  ++   C    +     +  K++ ++
Sbjct: 409 VLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKR 468

Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLR 232
           +  D + Y  ++    RAG   EA  L R
Sbjct: 469 VEPDFKAYTIMIAELNRAGMRTEADALNR 497


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 6/231 (2%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN-FITNTENSLSVLSDLCR 91
           P    Y  +VN             L+ K + D C     TFN FI     S  V   +  
Sbjct: 422 PNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAI-N 480

Query: 92  TLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              ++++    P    Y+ ++  L K  +I EAL +V  M E G  L+ +T++ I     
Sbjct: 481 LFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFC 540

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADA 208
              + EEA  L+  M    V PD   YN L  AYC +G +     +L K+    K   + 
Sbjct: 541 NVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEV 600

Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY-AHVMGALLRLGY 258
             Y +L+ G C    VEEA + L +M+++G  +  +T+ A V G    LG+
Sbjct: 601 AAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGLFNSLGH 651



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 4/186 (2%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y  LI    K   +  A  + + M   G   + + +  +++VL R     +AW L
Sbjct: 387 PNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSL 446

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +E M      P+   +N  +   C  G +     +  +ME+     + +TY+ ++ G  +
Sbjct: 447 IEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLK 506

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDT 278
             R++EA  L+  M + G  +   TY  + G    +G + +A+K +  M+ GG  +K D 
Sbjct: 507 ENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGG--VKPDA 564

Query: 279 ELFGSL 284
             + +L
Sbjct: 565 ITYNTL 570



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 2   SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
           +L+  L +   + ++V V+    ++G  P+  T   Y  L++      DL     + NK 
Sbjct: 359 TLIHGLCSHGKMGEAVSVSSKMERNGCSPNVST---YGALIDGFAKAGDLVGASEIWNKM 415

Query: 62  ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKI 119
             + C      +  + N     S+ S     + ++  D   P    ++T I  LC   ++
Sbjct: 416 MTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRV 475

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
           + A+ +   M + G   +  T++ +L  L +  R++EA  L+  M+E  +  +L  YN +
Sbjct: 476 ECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTI 535

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
              +C  G       +L KM    +  DA TY+ L    C  G+V+ A  LL ++   G+
Sbjct: 536 FGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGK 595

Query: 240 SV 241
            V
Sbjct: 596 WV 597



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 71/157 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  S Y+ LI   C+  K+ E   ++  M E G   + IT+  ++S L+    +E A  +
Sbjct: 247 PNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAV 306

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M     SP++  +  L+  Y  +G +     +  +M EE    +   Y+ L+ G C 
Sbjct: 307 WAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCS 366

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            G++ EA  +  +M  +G S   STY  ++    + G
Sbjct: 367 HGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAG 403



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 114/282 (40%), Gaps = 44/282 (15%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR-------ARDCCFNTANTF 73
           RS   S AF  + T   Y  ++   G E D++ V+YLL +        + D   N  NT+
Sbjct: 67  RSIANSKAF--QHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTY 124

Query: 74  NFITNTENSLSVLSDL----CRTLARL--------------------------DKGFPRK 103
             +   E +L +   +    C+   ++                          D   P  
Sbjct: 125 RRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNV 184

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
             Y+ L+  LCK  ++D A +++  M+  G     +++  ++S +++  ++EEA  L   
Sbjct: 185 YTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL--- 241

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
              IR  P+++ YN L+  +C +  +     +L +M E+ +  +  TY  ++      G 
Sbjct: 242 --SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGN 299

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           VE A  +  +M   G S    T+  +M      G   +A+  
Sbjct: 300 VELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNI 341



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 127/313 (40%), Gaps = 43/313 (13%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           +P  + Y+ L+N    E  ++ V  LL +           T++ + +   SLS + ++  
Sbjct: 246 QPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVIS---SLSGIGNVEL 302

Query: 92  TLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
            LA   K F     P    + +L+       ++ EAL + + MAE GF  + + ++ ++ 
Sbjct: 303 ALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIH 362

Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE----- 201
            L    +M EA  +   M+    SP+++ Y  L+  +   G+L   S +  KM       
Sbjct: 363 GLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIP 422

Query: 202 -------------------------EKLGAD-----ARTYDALVLGACRAGRVEEAFVLL 231
                                    EK+  D       T++  + G C +GRVE A  L 
Sbjct: 423 NVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLF 482

Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
            +M   G S    TY  V+  LL+     +A++ V     + ++L+   + ++      +
Sbjct: 483 CQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNV 542

Query: 292 ERFNEANFILKEM 304
            +F EA  +L +M
Sbjct: 543 GKFEEALKLLGKM 555



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 2/185 (1%)

Query: 79  TENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
           TE  + + S+  R++A   K F      Y  +I +L +   +D    ++  M   G   S
Sbjct: 55  TETDIVLASNYFRSIAN-SKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCS 113

Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
              F  +++   R    E+A  +   ++E    P +  YN+LL A   +        +  
Sbjct: 114 EDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYS 173

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            M+ +    +  TY+ L+   C+  RV+ A  LL  M + G      +Y  V+ ++ +LG
Sbjct: 174 NMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLG 233

Query: 258 YYAQA 262
              +A
Sbjct: 234 KVEEA 238


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 74/140 (52%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P     + L+   C+ +K++EAL + +++      L  + ++ I+  + +G +++EAW L
Sbjct: 500 PDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDL 559

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    V PD+  YN +++ +C K  ++  + +  KM++     D  TY+ L+ G  +
Sbjct: 560 FCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLK 619

Query: 221 AGRVEEAFVLLRRMVDDGQS 240
           AG ++++  L+  M  +G S
Sbjct: 620 AGEIDKSIELISEMRSNGFS 639



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 100/219 (45%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++TLI  LC   ++ EA  +V+ M   G  +  +T+  I++ + +    + A  L
Sbjct: 224 PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 283

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M+E  + PD+  Y+ ++   C  G+ +    +  +M E+ +  +  TY+ ++ G C 
Sbjct: 284 LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCS 343

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR  +A  LLR M++   +    T+  ++ A ++ G   +A K       R I  DT  
Sbjct: 344 FGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVT 403

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYY 319
           + S+        RF++A  +   M   D+     + D Y
Sbjct: 404 YNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVY 442



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 17/253 (6%)

Query: 72  TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
           +FN +         LS    T  +L K GF P    ++TL+  LC   +I EAL +   M
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202

Query: 130 AEGGF-------------GLS--AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
            E GF             GL+   ITF+ +++ L    R+ EA  L+  M    +  D+ 
Sbjct: 203 VETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVV 262

Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
            Y  ++   C  G+  +   +L KMEE  +  D   Y A++   C+ G   +A  L   M
Sbjct: 263 TYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEM 322

Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
           ++ G +    TY  ++      G ++ A + +     R+I  D   F +L S  +   + 
Sbjct: 323 LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKL 382

Query: 295 NEANFILKEMNKR 307
            EA  +  EM  R
Sbjct: 383 FEAEKLCDEMLHR 395



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           + Y+TLI   C++  ++ A  +   M   G     IT + +L      +++EEA  L EV
Sbjct: 468 TTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV 527

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           ++  ++  D  AYN ++   C    +     +   +    +  D +TY+ ++ G C    
Sbjct: 528 IQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSA 587

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           + +A VL  +M D+G     STY  ++   L+ G   ++++ +
Sbjct: 588 ISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELI 630



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L+KG  P    Y+ +I   C   +  +A R++  M E       +TF+ ++S   +  ++
Sbjct: 323 LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKL 382

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L + M    + PD   YN ++  +C            K M +     D  T++ +
Sbjct: 383 FEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTI 438

Query: 215 VLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAH 248
           +   CRA RV+E   LLR +   G    +  Y+T  H
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 475



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175
            K +D+A+   D M       +A+  + ++ V  R  R + A  L   M+  R+  ++ +
Sbjct: 84  FKSLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYS 143

Query: 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF------- 228
           +N L+  +C    L+ +     K+ +     D  T++ L+ G C   R+ EA        
Sbjct: 144 FNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMV 203

Query: 229 --------VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
                    L  +MV+ G + +  T+  ++  L   G   +A   V    G+ + +D   
Sbjct: 204 ETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVT 263

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           +G++ + +  +     A  +L +M +  +K
Sbjct: 264 YGTIVNGMCKMGDTKSALNLLSKMEETHIK 293



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 49/121 (40%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           AY+ +I  +CK  K+DEA  +   +   G      T++ ++S       + +A  L   M
Sbjct: 539 AYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKM 598

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
           K+    PD + YN L+      G +  +  ++ +M       DA T        CR    
Sbjct: 599 KDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICRVSDE 658

Query: 225 E 225
           E
Sbjct: 659 E 659


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 119/276 (43%), Gaps = 3/276 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVLSDLCR 91
           P + + ++++N  G    L+    L  +     C  +  T+N I      S S  S++  
Sbjct: 300 PDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPS 359

Query: 92  TLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
              R+ +    P    Y  LI   CK  ++++A+ +++ M E GF      +  ++  L 
Sbjct: 360 WFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 419

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           + KR + A  L + +KE   S     Y  ++      G L     +  +M +     D  
Sbjct: 420 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVY 479

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
            Y+AL+ G  R G ++EA   +RRM + G     ++Y  ++  L + G   +A++ +   
Sbjct: 480 AYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 539

Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
               ++ D   + ++   L     F EA+ ++KEMN
Sbjct: 540 KQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMN 575



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 2/171 (1%)

Query: 90  CRTLARLDKGFPRKSA--YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
           C     L +     SA  Y  +I  L K  ++D+A+ + D M + G       ++ ++S 
Sbjct: 428 CELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSG 487

Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
           L R   ++EA   M  M+E    PD+ +YN +L      G       +L  M++  +  D
Sbjct: 488 LARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 547

Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258
             +Y+ ++     AG  EEA  L++ M   G      TY+ ++ A+ ++ +
Sbjct: 548 VVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDH 598



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 119/328 (36%), Gaps = 67/328 (20%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARD-CCFNTANTFNFITNTENSLSVLSDLC 90
           +P +  Y+ ++    HE   E V  L N+ + +  CF    T++         +++S  C
Sbjct: 158 QPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYS---------ALISAFC 208

Query: 91  RTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           + L R D               P    Y  LI    K      AL + + M         
Sbjct: 209 K-LGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDV 267

Query: 139 ITFHPILSVLTRGKRMEEAWG-----------------------------------LMEV 163
            T+  ++  L +  R++EA+                                    L + 
Sbjct: 268 FTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQE 327

Query: 164 MKEIRVSPDLTAYNYLLTA-YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
           M+ +R  P +  YN ++ A +  K   +      ++M+E  +   + TY  L+ G C+  
Sbjct: 328 METLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTN 387

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV----CGGRDIKLDT 278
           R+E+A +LL  M + G     + Y  ++ AL +   Y  A +        CG    ++  
Sbjct: 388 RMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYA 447

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306
            +   LG       R ++A  +  EMNK
Sbjct: 448 VMIKHLGKA----GRLDDAINMFDEMNK 471



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 72/186 (38%)

Query: 49  RDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDT 108
           R   T+ Y +  R         N+   +   E     +  L   ++     FP    Y  
Sbjct: 143 RQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSA 202

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           LI   CKL + D A+++++ M E G   +   +  ++++  +      A  L E M+   
Sbjct: 203 LISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQY 262

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             PD+  Y  L+      G +        +M+ E    D    + ++    +AGR+++A 
Sbjct: 263 CRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAM 322

Query: 229 VLLRRM 234
            L + M
Sbjct: 323 KLFQEM 328



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 2/156 (1%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT-FHPILSVLTRGKRMEEAWGLME 162
           S Y  LI  L  +++  E  +++  M      +   T    ++ +L   K + +A  +  
Sbjct: 91  STYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFY 150

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGACRA 221
            +K  +  P   AYN ++     +G       +  +M  E     D  TY AL+   C+ 
Sbjct: 151 QIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKL 210

Query: 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           GR + A  LL  M + G       Y  ++    +  
Sbjct: 211 GRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFN 246


>gi|255593595|ref|XP_002535907.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223521568|gb|EEF26477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 155

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 66/135 (48%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P  + Y T+IG LC+  K D+++  ++ + E G     IT++ I+    R  ++E+A+ 
Sbjct: 13  IPSINTYSTMIGGLCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQ 72

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
               M E    PDL   N LL   C +G L     +      +    DA TY+ ++ G C
Sbjct: 73  FRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLC 132

Query: 220 RAGRVEEAFVLLRRM 234
           + GR EEAF LL  M
Sbjct: 133 KEGRFEEAFDLLAEM 147



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%)

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L + MKE  + P +  Y+ ++   C  G    +   L ++ E  L     TY+ ++ G C
Sbjct: 3   LWDEMKEKEIIPSINTYSTMIGGLCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYC 62

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
           R G+VE+AF    +MV+        T   ++  L   G    A+K       +   +D  
Sbjct: 63  REGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAV 122

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
            + ++ S L    RF EA  +L EM ++ L
Sbjct: 123 TYNTIISGLCKEGRFEEAFDLLAEMEEKKL 152



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 62/140 (44%)

Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
           +++ D M E     S  T+  ++  L R  + +++   +  + E  + P    YN ++  
Sbjct: 1   MKLWDEMKEKEIIPSINTYSTMIGGLCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHG 60

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           YC +G +        KM E+    D  T + L+ G C  G ++ A  L    +  G+++ 
Sbjct: 61  YCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAID 120

Query: 243 YSTYAHVMGALLRLGYYAQA 262
             TY  ++  L + G + +A
Sbjct: 121 AVTYNTIISGLCKEGRFEEA 140


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 6/184 (3%)

Query: 80  ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
           E+++S L D  + +       P   + +T++ + CK+  ID A     +M + G    + 
Sbjct: 254 EDAISFLHDSNKVVG------PSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSF 307

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           +++ +L  L     M+EA G  + M++  V PD+  YN L   +   G ++    V++KM
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKM 367

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
             + L  D  TY  L+ G C+ G +EEA  L +  +  G  +    Y  ++  L ++G  
Sbjct: 368 LLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRI 427

Query: 260 AQAV 263
            +A+
Sbjct: 428 EEAL 431



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 2/250 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P+   ++ L+N      DL   R +L          +  T+  + N    +  + ++   
Sbjct: 549 PSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHF 608

Query: 93  LARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           L  ++     P    Y  LI  LC+  K+ E+L++++ M   G    ++T++ I+    +
Sbjct: 609 LHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCK 668

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
           GK + +A  L  +M      P    Y  L+ A C  G+L     ++  +E+  +     T
Sbjct: 669 GKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVT 728

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           Y  ++   C  G+V +A     +M+  G  +    Y+ V+  L + G   +A  F ++  
Sbjct: 729 YMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMML 788

Query: 271 GRDIKLDTEL 280
              +  D E+
Sbjct: 789 SEGVTPDPEI 798



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ +I    +L  I EA+++   M E G   S +TF+ +++   R   + EA  ++EV++
Sbjct: 519 YNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIR 578

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P +  Y  L+ AYC  GN+      L +ME   +     TY  L+ G CR  ++ 
Sbjct: 579 LKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMH 638

Query: 226 EAFVLLRRMVDDG---QSVLYST 245
           E+  LL  M   G    SV Y+T
Sbjct: 639 ESLQLLEYMYAKGLLPDSVTYNT 661



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 65/127 (51%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C++  I+EAL++       GF L+ I ++ +LS L +  R+EEA  L
Sbjct: 374 PDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTL 433

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M+ +R+ PD   Y+ L+   C +G +     + ++M  ++         A++LG  +
Sbjct: 434 FDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFK 493

Query: 221 AGRVEEA 227
            G + EA
Sbjct: 494 NGNISEA 500



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 2/216 (0%)

Query: 99  GFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           G P+     + LI  LC+  K+++A+  +   +    G S ++ + I+S   +   ++ A
Sbjct: 232 GAPQSECTTSILIHGLCEQSKLEDAISFLHD-SNKVVGPSIVSINTIMSKFCKVGLIDVA 290

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
                +M +  +  D  +YN LL   C  G++    G    ME+  +  D  TY+ L  G
Sbjct: 291 RSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKG 350

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
               G +  A  ++++M+  G +    TY  ++    ++G   +A+K       R  KL+
Sbjct: 351 FLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLN 410

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
              +  L S L  + R  EA  +  EM    L+  F
Sbjct: 411 VIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDF 446



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 66/161 (40%)

Query: 95  RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           RL + FP   A   ++  L K   I EA    D           + ++ ++    R   +
Sbjct: 473 RLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGI 532

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  L   M E  ++P +  +N L+  +C +G+L     +L+ +  + L     TY  L
Sbjct: 533 AEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTL 592

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           +   C  G ++E F  L  M  +     + TY  ++  L R
Sbjct: 593 MNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCR 633



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 1/174 (0%)

Query: 96  LDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           L +GF      Y+ L+  LCK+ +I+EAL + D M         I +  ++  L +   +
Sbjct: 403 LSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFV 462

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
           + A+ L E M+  R  P   A   +L      GN++             L  D   Y+ +
Sbjct: 463 QRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIM 522

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
           + G  R   + EA  L  +M++ G +    T+  ++    R G   +A K + V
Sbjct: 523 IDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEV 576



 Score = 43.9 bits (102), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+TL      L  +  A +VV  M   G     +T+  ++    +   +EEA  L
Sbjct: 339 PDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKL 398

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            +         ++  YN LL+  C  G +     +  +ME  +L  D   Y  L+ G C+
Sbjct: 399 RQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCK 458

Query: 221 AGRVEEAFVLLRRM 234
            G V+ A+ L  +M
Sbjct: 459 EGFVQRAYQLYEQM 472


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 68/138 (49%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y++LI  LC   KI EA+ + D M   G   + IT++ +++   +   ++EA  +
Sbjct: 329 PNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDM 388

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +K     P    YN L+ AYC  G +     + ++ME E +  D  TY+ L+ G CR
Sbjct: 389 FGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCR 448

Query: 221 AGRVEEAFVLLRRMVDDG 238
            G +E A  L  ++   G
Sbjct: 449 NGNIEAAKKLFDQLTSKG 466



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 84  SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
           ++L D    L ++D GF            P    Y+ LI  LC+   I+ A ++ D +  
Sbjct: 405 NMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTS 464

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G     +TFH ++    R     +A  L++ M ++ + P    YN ++  YC +GNL A
Sbjct: 465 KGLP-DLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKA 523

Query: 192 TSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
            + +  +ME+E +L  +  +Y+ L+ G  + G++E+A +LL  M++ G      TY  V 
Sbjct: 524 ATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVK 583

Query: 251 GALLRLGY 258
             ++  G+
Sbjct: 584 EEMVDQGF 591



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 4/211 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS---VLTRGKRMEEA 157
           P    ++ +I  LCK  K+++A  V++ M   G   + ++++ ++     L    +M +A
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKA 280

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             +++ M E  VSP+LT +N L+  +    NL  +  V K+M ++ +  +  +Y++L+ G
Sbjct: 281 DAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLING 340

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  G++ EA  +  +MV  G      TY  ++    +     +A+       G+     
Sbjct: 341 LCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPT 400

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRD 308
           T ++  L      L + ++  F LKE  +R+
Sbjct: 401 TRMYNMLIDAYCKLGKIDDG-FALKEEMERE 430



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 1/210 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  + ++ LI    K   +  +++V   M +     + I+++ +++ L  G ++ EA  +
Sbjct: 294 PNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISM 353

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            + M    V P+L  YN L+  +C    L     +   ++ +      R Y+ L+   C+
Sbjct: 354 RDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCK 413

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G++++ F L   M  +G      TY  ++  L R G    A K       + +  D   
Sbjct: 414 LGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLP-DLVT 472

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F  L           +A  +LKEM+K  LK
Sbjct: 473 FHILMEGYCRKGESRKAAMLLKEMSKMGLK 502



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G+ LSA++  P++  L +  R  +   + + M   ++ P++  +N ++ A C  G +   
Sbjct: 183 GYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACR---AGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
             V++ M+      +  +Y+ L+ G C+    G++ +A  +L+ MV++  S   +T+  +
Sbjct: 243 RDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNIL 302

Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
           +    +      ++K       +D+K +   + SL + L    + +EA
Sbjct: 303 IDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEA 350


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 92/209 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TLI   C +  + EA  +++ M          TF+ ++  L +  +++EA  L
Sbjct: 234 PNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSL 293

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
            E MK   + P++  Y  L+   C   +L     + KKM+E+ +  +  +Y  L+   C+
Sbjct: 294 FEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCK 353

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR+E A    + ++  G  +   TY  ++  L + G +   +       G+    +   
Sbjct: 354 GGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAIT 413

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F ++   L+  +  ++A   L+EM  R L
Sbjct: 414 FKTIICALLEKDENDKAEKFLREMIARGL 442



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 25/235 (10%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           M L+R  P  FL      +  S  K+  +P   T           G   DL T+  L+N 
Sbjct: 52  MLLMRPPPPTFLFNN---ILSSLVKNKRYP---TVISLFKQFEPNGITPDLCTLSILIN- 104

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKI 119
                       F  +T+   + SV +++      L +G+ P     +TLI  LC   +I
Sbjct: 105 -----------CFCHLTHITFAFSVFANI------LKRGYHPNAITLNTLIKGLCFCGEI 147

Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
             AL   D +   GF L  +++  +++ L +    +    L+  ++   V PDL  Y  +
Sbjct: 148 KRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTI 207

Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
           +   C    L     +  +M  + +  +  TY  L+ G C  G ++EAF LL  M
Sbjct: 208 IHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEM 262



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 62/144 (43%)

Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
           F+ ILS L + KR      L +  +   ++PDL   + L+  +C   ++T    V   + 
Sbjct: 64  FNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSVFANIL 123

Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
           +     +A T + L+ G C  G ++ A     ++V  G  +   +Y  ++  L + G   
Sbjct: 124 KRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETK 183

Query: 261 QAVKFVMVCGGRDIKLDTELFGSL 284
              + +    G  +K D  ++ ++
Sbjct: 184 AVARLLRKLEGHSVKPDLVMYTTI 207


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 4/218 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y+ L+  LCK  K+ EA  V+ +M +       IT+  ++        +++A  +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M  + V+PD+  Y  L+  +C    +     + K+M ++ +     TY +L+ G C+
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
           +GR+   + L+  M D GQ     TY+ ++  L + G+  +A+        ++I+ +   
Sbjct: 387 SGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFT 446

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDY 318
           F  L   L    R  +A  + +++    L  G+ L  Y
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDL----LTKGYHLNVY 480



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y  LI   CK K +DEAL +   M +       +T+  ++  L +  R+   W L
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDL 396

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M++     D+  Y+ L+   C  G+L     +  KM+++++  +  T+  L+ G C+
Sbjct: 397 IDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCK 456

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
            GR+++A  + + ++  G  +   TY  ++    + G   +A+
Sbjct: 457 GGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEAL 499



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 93/210 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           F + S++     +   ++ +D+A+   + M         I F+ IL    + K    A  
Sbjct: 21  FLQNSSHSHFHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVS 80

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   ++   + PDL   N L+  +C  G +T    VL K+ +     D  T + L+ G C
Sbjct: 81  LSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLC 140

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
             G+V++A     +++  G  +   +YA ++  + ++G    A+K +    GR  K + E
Sbjct: 141 LKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVE 200

Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309
           ++ ++   L   +  +EA  +  EM  + +
Sbjct: 201 MYSTIIDALCKYQLVSEAYGLFSEMTVKGI 230



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 125/311 (40%), Gaps = 68/311 (21%)

Query: 46  GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSA 105
           G + DL T+  L+N      CF       F        SVL+ +      L +G+P  + 
Sbjct: 89  GIQPDLITLNILIN------CFCHMGQITF------GFSVLAKI------LKRGYPPDTV 130

Query: 106 -YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF----------------------- 141
             +TLI  LC   ++ +AL   D +   GF L+ +++                       
Sbjct: 131 TLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKI 190

Query: 142 ------------HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
                         I+  L + + + EA+GL   M    +S D+  Y+ L+  +C +G L
Sbjct: 191 DGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKL 250

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
               G+L +M  + +  +  TY+ LV   C+ G+V+EA  +L  M+         TY+ +
Sbjct: 251 KEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTL 310

Query: 250 MGALLRLGYY-------AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
           M      GY+       AQ V   M   G  +  D   +  L +     +  +EA  + K
Sbjct: 311 MD-----GYFLVYEVKKAQHVFNAMSLMG--VTPDVHTYTILINGFCKNKMVDEALNLFK 363

Query: 303 EMNKRDLKMGF 313
           EM+++++  G 
Sbjct: 364 EMHQKNMVPGI 374



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 68/153 (44%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y TLI   C   K+ EA+ +++ M       +  T++ ++  L +  +++EA  ++ VM
Sbjct: 236 TYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVM 295

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V PD+  Y+ L+  Y     +     V   M    +  D  TY  L+ G C+   V
Sbjct: 296 LKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMV 355

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
           +EA  L + M          TY+ ++  L + G
Sbjct: 356 DEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSG 388


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 14/251 (5%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNT--- 69
           +P+   V      +G  PD  T     D +   G  R  E V  + +  +R C   T   
Sbjct: 225 LPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTG--RVEEAVCVVQDMSSRGCQPTTFIY 282

Query: 70  ---ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126
               +T+      E++++   D+ +     D   P    Y+ LI   CK+KK + A RV+
Sbjct: 283 SILVHTYGVDMRIEDAVAAFLDMEK-----DGIMPDVVVYNALITAFCKVKKFENAFRVM 337

Query: 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186
           D M   G   ++ T++ IL+ L    + +EA+ +   M + R  PD   Y  ++  +C  
Sbjct: 338 DDMQGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIK-RCKPDSDTYTMMIKMFCEN 396

Query: 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
             +     V K M  ++      T+  L+ G C  G V +A VLL  M++ G     ST+
Sbjct: 397 DKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTF 456

Query: 247 AHVMGALLRLG 257
             +   LL+ G
Sbjct: 457 GKLRQLLLKEG 467



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 113/284 (39%), Gaps = 37/284 (13%)

Query: 60  KRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKSAYDTLIGRLCKLKK 118
           K+ R  C +T  +++ +  +   +     +   +A + K G      +  ++ +  + +K
Sbjct: 96  KQKRGVCAHTVRSYHTVVTSLAKIRQYQLMWDVVAIMRKEGVANVETFGIIMRKYARAQK 155

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +DEA+   ++M + G   +   F+ +LS L + K + +A  + + M   R SPD   Y+ 
Sbjct: 156 LDEAVYTFNVMEKYGVAHNLAAFNSLLSALCKSKNVRKAQEIFDKMNN-RFSPDAKTYSI 214

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           LL  +    +L     V   M       D  TY  +V   C+ GRVEEA  +++ M   G
Sbjct: 215 LLEGWGRAPSLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRG 274

Query: 239 ---QSVLYSTYAHVMGALLRLG--------------------YYAQAVKFVMV------- 268
               + +YS   H  G  +R+                     Y A    F  V       
Sbjct: 275 CQPTTFIYSILVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALITAFCKVKKFENAF 334

Query: 269 -----CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
                  G  I  ++  +  + + LI L + +EA  + + M KR
Sbjct: 335 RVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIKR 378


>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
 gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
          Length = 448

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 36/243 (14%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y +L+   C+ +K+D A R+   M + G+G SA T+  +L  L  G R   A+ +
Sbjct: 182 PNVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDI 241

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK-MEEEKLGADA----------- 208
              M+     PD   Y  L+   C  G +T    + K+ +E EK   DA           
Sbjct: 242 HSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAGIYNVLIEGLC 301

Query: 209 ------------------------RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244
                                   +TY+AL++G  +A  V++A  L R M + G S    
Sbjct: 302 RASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAMEEKGFSPNTM 361

Query: 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            Y+  +  L ++G   +A +F      R    D   + +L   L G  R +EA+ + +EM
Sbjct: 362 IYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMDEAHRLYREM 421

Query: 305 NKR 307
            +R
Sbjct: 422 GER 424



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           + K  P    Y  LI  LCK  + D+A++V DIM E     +   +  +L+   R ++++
Sbjct: 142 IKKSVPDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLD 201

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A+ L   M +    P  + Y  LL   C  G       +   M       D  TY +L+
Sbjct: 202 GAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLI 261

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVL 242
            G C AGR+ EA VL + +++  ++ L
Sbjct: 262 YGCCMAGRITEAKVLFKEVLEGEKAQL 288



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 2/202 (0%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P   AY T++  L K  K  EA  VV  M +       +T+  ++SVL +  R ++
Sbjct: 109 DGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSVP-DGMTYTALISVLCKHNRADD 167

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A  + ++M E  + P++  Y  LL A+C    L     +  +M +   G  A TY  L+ 
Sbjct: 168 AMKVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLR 227

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA-VKFVMVCGGRDIK 275
             C  GR   A+ +   M   G     +TYA ++      G   +A V F  V  G   +
Sbjct: 228 CLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQ 287

Query: 276 LDTELFGSLGSKLIGLERFNEA 297
           LD  ++  L   L    +  EA
Sbjct: 288 LDAGIYNVLIEGLCRASKVEEA 309



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 5/145 (3%)

Query: 94  ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
           A+LD G      Y+ LI  LC+  K++EAL V   M + G   +  T++ ++    +   
Sbjct: 286 AQLDAGI-----YNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANE 340

Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
           +++A  L   M+E   SP+   Y+  +   C  G +       ++  E     D  TY+A
Sbjct: 341 VDKALQLFRAMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNA 400

Query: 214 LVLGACRAGRVEEAFVLLRRMVDDG 238
           L+ G   A R++EA  L R M + G
Sbjct: 401 LIRGLFGANRMDEAHRLYREMGERG 425


>gi|449449679|ref|XP_004142592.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Cucumis sativus]
 gi|449516715|ref|XP_004165392.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Cucumis sativus]
          Length = 594

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           +P    Y++LI   CK  K ++A  V+D +   G    A+T++ +L  L+R    +E   
Sbjct: 309 YPDLVTYNSLINLTCKQGKFEDAALVIDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDE 368

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           ++++M      P +   N L+   C  G L +    L +M       D  TY+ L+   C
Sbjct: 369 ILKIMSISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALC 428

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           + G V+EAF LL  + D   S    +Y  V+  L R GY  +A+  
Sbjct: 429 KEGMVDEAFQLLHLLTDTACSPGLISYNTVLDGLSRKGYMDKAMSL 474



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 5/230 (2%)

Query: 19  VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
           V       G +PD  T   Y+ L+N    +   E    +++          A T+N + +
Sbjct: 299 VLEEMANEGCYPDLVT---YNSLINLTCKQGKFEDAALVIDNLLFHGMVPDAVTYNTLLH 355

Query: 79  TENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
           + +      ++   L  +      P     + LI  LCK   +D A+  ++ M       
Sbjct: 356 SLSRRGHWDEVDEILKIMSISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLP 415

Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
             IT++ +L  L +   ++EA+ L+ ++ +   SP L +YN +L     KG +     + 
Sbjct: 416 DIITYNTLLGALCKEGMVDEAFQLLHLLTDTACSPGLISYNTVLDGLSRKGYMDKAMSLY 475

Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
            +M E  +  D  T+ +++ G CR+ +  EA   L+ ++  G  V  S Y
Sbjct: 476 SQMMENGIIPDDTTHRSIIWGFCRSNKFVEAVETLKGILKGGYEVNSSFY 525



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 73/163 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    Y+TL+G LCK   +DEA +++ ++ +       I+++ +L  L+R   M++A  
Sbjct: 414 LPDIITYNTLLGALCKEGMVDEAFQLLHLLTDTACSPGLISYNTVLDGLSRKGYMDKAMS 473

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L   M E  + PD T +  ++  +C           LK + +     ++  Y  LV   C
Sbjct: 474 LYSQMMENGIIPDDTTHRSIIWGFCRSNKFVEAVETLKGILKGGYEVNSSFYRILVHELC 533

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              +V+ A  +L  M+        + Y+ ++ ++   G   QA
Sbjct: 534 LNKKVDLAIQVLEMMLSSPCKSNETIYSTIINSIASAGLKEQA 576



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 90/200 (45%), Gaps = 7/200 (3%)

Query: 64  DCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEAL 123
           +CC N    F      + ++ VL      +  +  G P    Y+ +IG LCK   ++ A+
Sbjct: 173 ECCINMIRGFVNTDRMDKAVQVLK-----IMVMSGGVPDIITYNMVIGCLCKQGHLESAI 227

Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT-A 182
            +++ M+  G     IT++ ++  +      ++A    +        P L  Y  L+   
Sbjct: 228 ELLNDMSLSGCPPDVITYNAVIRHMFDNGCFDQAVEFWKEQLRKGTPPYLITYTILIELV 287

Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
           +  +G + A   VL++M  E    D  TY++L+   C+ G+ E+A +++  ++  G    
Sbjct: 288 WKHRGTVCALE-VLEEMANEGCYPDLVTYNSLINLTCKQGKFEDAALVIDNLLFHGMVPD 346

Query: 243 YSTYAHVMGALLRLGYYAQA 262
             TY  ++ +L R G++ + 
Sbjct: 347 AVTYNTLLHSLSRRGHWDEV 366



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 15/273 (5%)

Query: 1   MSLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNK 60
           ++++R       + ++V V +    SG  PD  T   Y+ ++     +  LE+   LLN 
Sbjct: 176 INMIRGFVNTDRMDKAVQVLKIMVMSGGVPDIIT---YNMVIGCLCKQGHLESAIELLND 232

Query: 61  RARDCCFNTANTFNFITNTENSLSVLSDLCRTLA------RLDKGFPRK-SAYDTLIGRL 113
            +   C     T+N +        +  + C   A      +L KG P     Y  LI  +
Sbjct: 233 MSLSGCPPDVITYNAVIR-----HMFDNGCFDQAVEFWKEQLRKGTPPYLITYTILIELV 287

Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
            K +    AL V++ MA  G     +T++ ++++  +  + E+A  +++ +    + PD 
Sbjct: 288 WKHRGTVCALEVLEEMANEGCYPDLVTYNSLINLTCKQGKFEDAALVIDNLLFHGMVPDA 347

Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
             YN LL +   +G+      +LK M          T + L+ G C+ G ++ A   L +
Sbjct: 348 VTYNTLLHSLSRRGHWDEVDEILKIMSISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQ 407

Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           M          TY  ++GAL + G   +A + +
Sbjct: 408 MFSYNCLPDIITYNTLLGALCKEGMVDEAFQLL 440



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 95/234 (40%), Gaps = 2/234 (0%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  L+      R       +L + A + C+    T+N + N         D    
Sbjct: 275 PYLITYTILIELVWKHRGTVCALEVLEEMANEGCYPDLVTYNSLINLTCKQGKFEDAALV 334

Query: 93  LARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
           +  L      P    Y+TL+  L +    DE   ++ IM+      + +T + +++ L +
Sbjct: 335 IDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDEILKIMSISLQPPTVVTCNVLINGLCK 394

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              ++ A   +  M      PD+  YN LL A C +G +     +L  + +        +
Sbjct: 395 NGLLDSAINFLNQMFSYNCLPDIITYNTLLGALCKEGMVDEAFQLLHLLTDTACSPGLIS 454

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           Y+ ++ G  R G +++A  L  +M+++G     +T+  ++    R   + +AV+
Sbjct: 455 YNTVLDGLSRKGYMDKAMSLYSQMMENGIIPDDTTHRSIIWGFCRSNKFVEAVE 508



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG----KRMEEAWGLME 162
           + ++ + C   K+ EA RVVDIMA          F   ++++ RG     RM++A  +++
Sbjct: 141 NVILQKFCYKGKLMEASRVVDIMASRN---QIPDFECCINMI-RGFVNTDRMDKAVQVLK 196

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
           +M      PD+  YN ++   C +G+L +   +L  M       D  TY+A++      G
Sbjct: 197 IMVMSGGVPDIITYNMVIGCLCKQGHLESAIELLNDMSLSGCPPDVITYNAVIRHMFDNG 256

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYA 247
             ++A    +  +  G      TY 
Sbjct: 257 CFDQAVEFWKEQLRKGTPPYLITYT 281



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 43/98 (43%)

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
           V  D    N +L  +C+KG L   S V+  M       D      ++ G     R+++A 
Sbjct: 133 VGNDEETNNVILQKFCYKGKLMEASRVVDIMASRNQIPDFECCINMIRGFVNTDRMDKAV 192

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            +L+ MV  G      TY  V+G L + G+   A++ +
Sbjct: 193 QVLKIMVMSGGVPDIITYNMVIGCLCKQGHLESAIELL 230


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 8/248 (3%)

Query: 13  IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
           +P++  + R    +G  PD  T     D++  AG    ++    ++N+     C  T   
Sbjct: 175 LPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGR---VDEALGIVNEMDSTVCKPTPFI 231

Query: 73  FNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
           ++ + +T    + + D   T   ++     P  + Y+ LIG  CK  ++    RV++ M 
Sbjct: 232 YSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMD 291

Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV-SPDLTAYNYLLTAYCFKGNL 189
             G   ++ TF+ ILS L      +EA+ +   ++ I+V  PD   Y  ++  +C +  L
Sbjct: 292 CKGVTPNSRTFNIILSSLIGRGETDEAYRVF--LRMIKVCEPDADTYTMMIKMFCERDEL 349

Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
                V K M+ ++      T+  L+ G C  G V +A VLL  M++ G      T+  +
Sbjct: 350 KKALKVWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRL 409

Query: 250 MGALLRLG 257
              L++ G
Sbjct: 410 RQLLIKEG 417



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 2/162 (1%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
           A+ T+I  L K+++      VV +M      ++  TF  I+    R +++EEA     +M
Sbjct: 58  AFHTVIDSLAKIRQYQLMWDVVKVMKSKRM-VNVETFCIIMRKYARAQKVEEAVYTFNIM 116

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  V P+L A+N LL+A C   N+     +   + +++   D++TY  L+ G  +   +
Sbjct: 117 DKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSI-KDRFVPDSKTYSILLEGWGKDPNL 175

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            +A  + R MV +G      TY  ++  L + G   +A+  V
Sbjct: 176 PKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIV 217



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 14/217 (6%)

Query: 67  FNTANTFNFITNTENSLSVLSDLCRTL----------ARLDKGFPRKSAYDTLIGRLCKL 116
           FN  + ++   N      +LS LC++           +  D+  P    Y  L+    K 
Sbjct: 113 FNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTYSILLEGWGKD 172

Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
             + +A  +   M   G     +T+  ++ VL +  R++EA G++  M      P    Y
Sbjct: 173 PNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIY 232

Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
           + L+  Y  +  +        +ME   +  D   Y+AL+   C+A R++  + +L  M  
Sbjct: 233 SVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDC 292

Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQA----VKFVMVC 269
            G +    T+  ++ +L+  G   +A    ++ + VC
Sbjct: 293 KGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMIKVC 329



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 1/197 (0%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P  +A++ L+  LCK K + +A  + D + +  F   + T+  +L    +   + +A  +
Sbjct: 123 PNLAAFNGLLSALCKSKNVRKAQEIFDSIKDR-FVPDSKTYSILLEGWGKDPNLPKAREI 181

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M      PD+  Y  ++   C  G +    G++ +M+          Y  LV     
Sbjct: 182 FREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGI 241

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
             R+E+A      M ++G     + Y  ++GA  +        + +     + +  ++  
Sbjct: 242 ENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRT 301

Query: 281 FGSLGSKLIGLERFNEA 297
           F  + S LIG    +EA
Sbjct: 302 FNIILSSLIGRGETDEA 318


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    + TL+   C   ++ EA+ +VD M E       +T   +++ L    R+ EA  L
Sbjct: 167 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 226

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           ++ M E    PD   Y  +L   C  GN      + +KMEE  + A    Y  ++   C+
Sbjct: 227 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK 286

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G  ++A  L   M   G      TY+ ++G L   G +    K +    GR+I  D   
Sbjct: 287 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT 346

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
           F +L    +   +  EA  +  EM  R +
Sbjct: 347 FSALIDVFVKEGKLLEAKELYNEMITRGI 375



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 25/264 (9%)

Query: 3   LLRKLPTKFLIPQSVLVTR---SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLN 59
           +LR++  + +IP  V  +     F K G   +      Y++++   G   D  T   L++
Sbjct: 331 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLE--AKELYNEMI-TRGIAPDTITYNSLID 387

Query: 60  KRARDCCFNTANT-FNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKK 118
              ++ C + AN  F+ +         +S  C          P    Y  LI   CK K+
Sbjct: 388 GFCKENCLHEANQMFDLM---------VSKGCE---------PDIVTYSILINSYCKAKR 429

Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
           +D+ +R+   ++  G   + IT++ ++    +  ++  A  L + M    V P +  Y  
Sbjct: 430 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 489

Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           LL   C  G L     + +KM++ ++      Y+ ++ G C A +V++A+ L   + D G
Sbjct: 490 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 549

Query: 239 QSVLYSTYAHVMGALLRLGYYAQA 262
                 TY  ++G L + G  ++A
Sbjct: 550 VKPDVVTYNVMIGGLCKKGSLSEA 573



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 9/245 (3%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P +  Y+ L++    E  L     + +      C     T++ + N+      + D  R 
Sbjct: 377 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 436

Query: 93  LARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
              +  KG  P    Y+TL+   C+  K++ A  +   M   G   S +T+  +L  L  
Sbjct: 437 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 496

Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
              + +A  + E M++ R++  +  YN ++   C    +     +   + ++ +  D  T
Sbjct: 497 NGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 556

Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY-----AHVMGALLRLGYYAQAVKF 265
           Y+ ++ G C+ G + EA +L R+M +DG +    TY     AH+ G+   L    + ++ 
Sbjct: 557 YNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGS--GLISSVELIEE 614

Query: 266 VMVCG 270
           + VCG
Sbjct: 615 MKVCG 619



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 91/213 (42%)

Query: 98  KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           +  P    ++ L   + + K+ D  L     M   G      T   +++   R K++  A
Sbjct: 94  RPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFA 153

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
           + ++    ++   PD   ++ L+  +C +G ++    ++ +M E K   D  T   L+ G
Sbjct: 154 FSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLING 213

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C  GRV EA VL+ RMV+ G      TY  V+  L + G  A A+        R+IK  
Sbjct: 214 LCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKAS 273

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              +  +   L     F++A  +  EM  + +K
Sbjct: 274 VVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIK 306



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 92/201 (45%)

Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
           +I   C+ KK+  A  V+    + G+    ITF  +++      R+ EA  L++ M E++
Sbjct: 140 MINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMK 199

Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
             PDL   + L+   C KG ++    ++ +M E     D  TY  ++   C++G    A 
Sbjct: 200 QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALAL 259

Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
            L R+M +         Y+ V+ +L + G +  A+        + IK D   + SL   L
Sbjct: 260 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 319

Query: 289 IGLERFNEANFILKEMNKRDL 309
               ++++   +L+EM  R++
Sbjct: 320 CNDGKWDDGAKMLREMIGRNI 340



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 18/232 (7%)

Query: 40  DLVNAAGHERDLETVRYLLN-----KRARDC--CFNTANTFNFITNTENSLSVLSDLCRT 92
           DL+ + G E D+ T   L+N     KR  D    F   ++   I NT    +++   C++
Sbjct: 403 DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQS 462

Query: 93  ----------LARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
                        + +G P     Y  L+  LC   ++++AL + + M +    L    +
Sbjct: 463 GKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY 522

Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
           + I+  +    ++++AW L   + +  V PD+  YN ++   C KG+L+    + +KM+E
Sbjct: 523 NIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 582

Query: 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
           +    D  TY+ L+        +  +  L+  M   G S   ST   V+  L
Sbjct: 583 DGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 634



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 84/206 (40%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y++LI   CK   + EA ++ D+M   G     +T+  +++   + KR+++   L
Sbjct: 377 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 436

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    + P+   YN L+  +C  G L A   + ++M    +     TY  L+ G C 
Sbjct: 437 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 496

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G + +A  +  +M     ++    Y  ++  +        A         + +K D   
Sbjct: 497 NGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 556

Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
           +  +   L      +EA+ + ++M +
Sbjct: 557 YNVMIGGLCKKGSLSEADMLFRKMKE 582



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 85/211 (40%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y +LIG LC   K D+  +++  M         +TF  ++ V  +  ++ EA  L   M
Sbjct: 311 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 370

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
               ++PD   YN L+  +C +  L   + +   M  +    D  TY  L+   C+A RV
Sbjct: 371 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 430

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           ++   L R +   G      TY  ++    + G    A +       R +      +G L
Sbjct: 431 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGIL 490

Query: 285 GSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
              L      N+A  I ++M K  + +G  +
Sbjct: 491 LDGLCDNGELNKALEIFEKMQKSRMTLGIGI 521



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 74/166 (44%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P    +  LI    K  K+ EA  + + M   G     IT++ ++    +   + EA  
Sbjct: 341 IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQ 400

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + ++M      PD+  Y+ L+ +YC    +     + +++  + L  +  TY+ LVLG C
Sbjct: 401 MFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFC 460

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           ++G++  A  L + MV  G      TY  ++  L   G   +A++ 
Sbjct: 461 QSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 506



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 83/202 (41%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y  +I  LCK    D+AL + + M   G     +T+  ++  L    + ++   ++  M 
Sbjct: 277 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 336

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + PD+  ++ L+  +  +G L     +  +M    +  D  TY++L+ G C+   + 
Sbjct: 337 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 396

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           EA  +   MV  G      TY+ ++ +  +       ++       + +  +T  + +L 
Sbjct: 397 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 456

Query: 286 SKLIGLERFNEANFILKEMNKR 307
                  + N A  + +EM  R
Sbjct: 457 LGFCQSGKLNAAKELFQEMVSR 478



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%)

Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
           K+++A+ + + M +     + I F+ + S + R K+ +   G  + M+   +  D+    
Sbjct: 79  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 138

Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
            ++  YC K  L     VL +  +     D  T+  LV G C  GRV EA  L+ RMV+ 
Sbjct: 139 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 198

Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
            Q     T + ++  L   G  ++A+  +
Sbjct: 199 KQRPDLVTVSTLINGLCLKGRVSEALVLI 227


>gi|224081503|ref|XP_002306437.1| predicted protein [Populus trichocarpa]
 gi|222855886|gb|EEE93433.1| predicted protein [Populus trichocarpa]
          Length = 462

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 106/258 (41%), Gaps = 32/258 (12%)

Query: 44  AAGHER-DLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR 102
           ++ H + D  T  +L+    +   FN+   ++FI   ++S  +  DL             
Sbjct: 185 SSKHSKPDTFTYNFLVKCLCKSRIFNSV--YSFIDEMKSSFDIKPDLV------------ 230

Query: 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162
              Y  LI  +C  K I EA R+V ++ E G    A  ++ I+       +  EA  + +
Sbjct: 231 --TYTILIDNVCNAKNIREADRLVAVLKECGLKPDAFLYNTIMKGYCLLNKGIEAVRIYK 288

Query: 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222
            MKE  V PDL  YN L+      G ++    +LK M E     DA TY +L+ G CR G
Sbjct: 289 QMKEEGVEPDLVTYNTLIFGLSKCGRVSEAKKLLKIMVESGHFPDAVTYTSLMNGMCREG 348

Query: 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282
            V  A  LL  M   G S    TY  ++                  C GR +    EL+G
Sbjct: 349 DVLGAAALLEEMELKGCSPNSCTYNTLLHGF---------------CKGRRLNKGVELYG 393

Query: 283 SLGSKLIGLERFNEANFI 300
            +    + LE  + A F+
Sbjct: 394 VIKKGGMKLETASYATFV 411



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 82/157 (52%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+T++   C L K  EA+R+   M E G     +T++ ++  L++  R+ EA  L+++M 
Sbjct: 267 YNTIMKGYCLLNKGIEAVRIYKQMKEEGVEPDLVTYNTLIFGLSKCGRVSEAKKLLKIMV 326

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E    PD   Y  L+   C +G++   + +L++ME +    ++ TY+ L+ G C+  R+ 
Sbjct: 327 ESGHFPDAVTYTSLMNGMCREGDVLGAAALLEEMELKGCSPNSCTYNTLLHGFCKGRRLN 386

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
           +   L   +   G  +  ++YA  + AL R G  A+A
Sbjct: 387 KGVELYGVIKKGGMKLETASYATFVRALCREGRVAEA 423



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 99/237 (41%), Gaps = 6/237 (2%)

Query: 71  NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLK--KIDEALRVVDI 128
            ++  I+  ++S+S+L  + +TL  L    P +S Y  L+ + C+     +  A +V+++
Sbjct: 92  QSYTSISTLDDSISLLDHMVKTLPSLS---PDRSTYHVLLSQSCREPDSSLSSAQKVLNL 148

Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
           M   GF  +  T    +  L    R+++A  L++        PD   YN+L+   C    
Sbjct: 149 MINKGFKPNQFTVDVAIRSLCSAGRVDDAILLVKEFSSKHSKPDTFTYNFLVKCLCKSRI 208

Query: 189 LTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
             +    + +M+    +  D  TY  L+   C A  + EA  L+  + + G       Y 
Sbjct: 209 FNSVYSFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIREADRLVAVLKECGLKPDAFLYN 268

Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +M     L    +AV+         ++ D   + +L   L    R +EA  +LK M
Sbjct: 269 TIMKGYCLLNKGIEAVRIYKQMKEEGVEPDLVTYNTLIFGLSKCGRVSEAKKLLKIM 325


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 8/168 (4%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRMEEAWG 159
           P    Y TL+    K  K D A++V + M   G   +  TF+ ++ +   RG  +E    
Sbjct: 394 PDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVE---- 449

Query: 160 LMEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           +M+V +EI++    PD+  +N LL  +   G  +  SGV K+M+      +  T++ L+ 
Sbjct: 450 MMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 509

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
              R G  ++A  + RRM+D G +   STY  V+ AL R G + Q+ K
Sbjct: 510 AYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEK 557



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 89/208 (42%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P+     TL+    K   + E  R    + E GF     T + ++S+  R + + +   +
Sbjct: 604 PQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEI 663

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +K+   +P LT YN L+  Y    +   +  +L+++  + +  D  +++ ++   CR
Sbjct: 664 LNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCR 723

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            GR++EA  +   M D G +    TY   + +      + +A+  V      + K +   
Sbjct: 724 NGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNT 783

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
           + SL      L R +EAN  +  +   D
Sbjct: 784 YNSLIDWFCKLNRRDEANSFISNLRNLD 811



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 13/205 (6%)

Query: 38  YDDLVNA-AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL----SVLSDLCRT 92
           Y  L+ A A + R  E V  +  K   + C  T  T+N I N    +    S ++ L  +
Sbjct: 223 YTSLITAYASNGRYREAV-MVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDS 281

Query: 93  LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152
           +       P    Y+TLI    +    +EA  V + M   GF    +T++ +L V  + +
Sbjct: 282 MKSSGVA-PDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSR 340

Query: 153 RMEEAWGLMEVMKEIRVS---PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           R  EA   MEV+KE+  S   P +  YN L++AY   G L     +  +M ++ +  D  
Sbjct: 341 RPREA---MEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVF 397

Query: 210 TYDALVLGACRAGRVEEAFVLLRRM 234
           TY  L+ G  + G+ + A  +   M
Sbjct: 398 TYTTLLSGFEKTGKDDYAMKVFEEM 422



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 36/242 (14%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P +  ++TLI    +    D+A+ +   M + G      T++ +L+ L RG   E++
Sbjct: 496 GFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQS 555

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYC---------------FKGNLTATSGVLK----- 197
             ++  MK+ R  P+   Y  LL AY                + G +   + +LK     
Sbjct: 556 EKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLV 615

Query: 198 ---------------KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
                          ++ E+    D  T +A+V    R   V +   +L  + D G +  
Sbjct: 616 YSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPS 675

Query: 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302
            +TY  +M    R  ++ ++   +     + +K D   F ++        R  EA+ I  
Sbjct: 676 LTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFA 735

Query: 303 EM 304
           EM
Sbjct: 736 EM 737



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS 170
           G   ++ K+ E +++ + + +       +T++ +L+V  +     E  G+ + MK     
Sbjct: 445 GNFVEMMKVFEEIKICECVPD------IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV 498

Query: 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230
           P+   +N L++AY   G       + ++M +  +  D  TY+A++    R G  E++  +
Sbjct: 499 PERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKV 558

Query: 231 LRRMVD 236
           L  M D
Sbjct: 559 LAEMKD 564



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 1/162 (0%)

Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
           I+SVL +  R   A  L+  ++   V  D+ AY  L+TAY   G       V KK+EEE 
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 204 LGADARTYDALVLGACRAGRVEEAFV-LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
                 TY+ ++    + G        L+  M   G +    TY  ++ +  R   Y +A
Sbjct: 251 CRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEA 310

Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
            +            D   + +L        R  EA  +LKEM
Sbjct: 311 AEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEM 352


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 125/300 (41%), Gaps = 22/300 (7%)

Query: 24  TKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83
            K G F   P    Y+ L+N+     DL+    L         ++  +  N   N     
Sbjct: 354 VKVGRFGFVPNLFVYNALINSLCKGGDLDKAELL---------YSNMSLMNLRPNGITYS 404

Query: 84  SVLSDLCRTLARLDKG---FPRK---------SAYDTLIGRLCKLKKIDEALRVVDIMAE 131
            ++   CR+  RLD     F R           AY++LI   CK   +  A  +   M  
Sbjct: 405 ILIDSFCRS-GRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTN 463

Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
            G   +A TF  ++S   +  ++++A+ L   M +  ++P++  +  L++  C    +  
Sbjct: 464 KGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAE 523

Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
            S +  ++ E K+     TY+ L+ G CR G++++AF LL  M   G      TY  ++ 
Sbjct: 524 ASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLIS 583

Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
            L   G  ++A  F+     +++KL+   + +L        R  EA     EM +R + M
Sbjct: 584 GLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINM 643



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 81/181 (44%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y TL+   C+L++ +  ++++D M E GF  +      ++  L +  ++++A+ L+  + 
Sbjct: 298 YCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVG 357

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
                P+L  YN L+ + C  G+L     +   M    L  +  TY  L+   CR+GR++
Sbjct: 358 RFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLD 417

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A     RM+ DG       Y  ++    + G  + A    +    + ++     F SL 
Sbjct: 418 VAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLI 477

Query: 286 S 286
           S
Sbjct: 478 S 478



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 96/213 (45%), Gaps = 1/213 (0%)

Query: 99  GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
           GF P ++A   L+  L K  KID+A  +V  +   GF  +   ++ +++ L +G  +++A
Sbjct: 325 GFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKA 384

Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
             L   M  + + P+   Y+ L+ ++C  G L        +M ++ +G     Y++L+ G
Sbjct: 385 ELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLING 444

Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
            C+ G +  A  L   M + G     +T+  ++    +     +A K         I  +
Sbjct: 445 QCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPN 504

Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
              F +L S L    +  EA+ +  E+ +R +K
Sbjct: 505 VYTFTALISGLCSTNKMAEASELFDELVERKIK 537



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 1/149 (0%)

Query: 90  CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
           C  L   ++ FP    Y  L+  LCK  ++D A  +   M       ++IT+   L  LT
Sbjct: 702 CWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLT 761

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
           +   M+EA GL   M +  ++  +T +N ++  +C  G     + VL +M E  +  D  
Sbjct: 762 KEGNMKEAIGLHHAMLKGLLANTVT-HNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCV 820

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  L+   CR+G V  +  L   M++ G
Sbjct: 821 TYSTLIYEYCRSGNVGASVKLWDTMLNRG 849



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRY--LLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
           EPT+  +  L+  +G+ +DL+  +   L NK   +    T N + F        +++S L
Sbjct: 467 EPTATTFTSLI--SGYCKDLQVQKAFKLYNKMIDNGI--TPNVYTFT-------ALISGL 515

Query: 90  CRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
           C T  +A   + F         P +  Y+ LI   C+  KID+A  +++ M + G     
Sbjct: 516 CSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDT 575

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
            T+ P++S L    R+ +A   ++ + +  V  +   Y+ LL  YC +G L        +
Sbjct: 576 YTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCE 635

Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
           M +  +  D   +  L+ GA +    +  F LL+ M D G    +V+Y++
Sbjct: 636 MIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTS 685



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 2/170 (1%)

Query: 97  DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           D+G  P    Y ++I    K     +A    D+M       + +T+  +++ L +   M+
Sbjct: 673 DQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMD 732

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L + M+   V P+   Y   L     +GN+    G+   M +  L A+  T++ ++
Sbjct: 733 RAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLL-ANTVTHNIII 791

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
            G C+ GR  EA  +L  M ++G      TY+ ++    R G    +VK 
Sbjct: 792 RGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKL 841



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 11/210 (5%)

Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
            Y  L+   C+  ++ EAL     M + G  +  +    ++    +    +  + L++ M
Sbjct: 612 CYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDM 671

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
            +  + PD   Y  ++  Y  +G+          M  E+   +  TY AL+ G C+AG +
Sbjct: 672 HDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEM 731

Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           + A +L +RM          TY   +  L + G   +A+      G     L   L  ++
Sbjct: 732 DRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAI------GLHHAMLKGLLANTV 785

Query: 285 GSKLI-----GLERFNEANFILKEMNKRDL 309
              +I      L RF+EA  +L EM +  +
Sbjct: 786 THNIIIRGFCKLGRFHEATKVLSEMTENGI 815



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 60/134 (44%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P       ++  +C+LK    A   +  M   GF LS +T++ ++  L +G R+ EA  +
Sbjct: 223 PDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEV 282

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              +    ++ D+  Y  L+  +C      A   ++ +M E            LV G  +
Sbjct: 283 KRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRK 342

Query: 221 AGRVEEAFVLLRRM 234
            G++++A+ L+ ++
Sbjct: 343 QGKIDDAYELVVKV 356



 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 32/167 (19%), Positives = 65/167 (38%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
           F     ++ L+       +I +A+ +V +M          T   +L+ L + ++    W 
Sbjct: 152 FSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWE 211

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           L +      V PD    + ++ + C   +       ++ ME         TY+ L+ G C
Sbjct: 212 LFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLC 271

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +  RV EA  + R +   G +    TY  ++    RL  +   ++ +
Sbjct: 272 KGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLM 318



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 64/171 (37%)

Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
            P       L+  L K++K      + D     G      T   ++  +   K    A  
Sbjct: 187 LPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKE 246

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
            +  M+       +  YN L+   C    ++    V + +  + L AD  TY  LVLG C
Sbjct: 247 KIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFC 306

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           R  + E    L+  MV+ G S   +  + ++  L + G    A + V+  G
Sbjct: 307 RLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVG 357


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 4/209 (1%)

Query: 33  PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
           P    Y  +V A   E+D   V  +LN+     C     T+  + +       +S     
Sbjct: 290 PDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEV 349

Query: 93  LARLDKG---FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
             ++ KG    P  S Y +LI  L K  ++ +A  V + M + G     +T++ ++S   
Sbjct: 350 YEKM-KGSSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAAC 408

Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
              + E+A  L+  M+E    PDL  Y+ LL   C    +   S +L  M +  +  +  
Sbjct: 409 MHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVG 468

Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG 238
           TY  LV G C++G++E A +    MV  G
Sbjct: 469 TYSLLVHGLCKSGKLEHACLFFEEMVSKG 497



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 2/166 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP-ILSVLTRGKRMEEAWG 159
           P    Y  ++  L K K+I +AL V + M +G   +   +F+  ++ +L++  R+++A  
Sbjct: 325 PNVVTYTIVMHALGKGKEISKALEVYEKM-KGSSCVPDTSFYSSLIYILSKAGRLKDARD 383

Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
           + E M +    PD+  YN +++A C          +L KMEE     D  TY  L+   C
Sbjct: 384 VFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCC 443

Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
           R  R++    LL  M  +  S+   TY+ ++  L + G    A  F
Sbjct: 444 RNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACLF 489



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 89/195 (45%), Gaps = 2/195 (1%)

Query: 63  RDCCFNTANTFNFITNTENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKID 120
           +D      +TFN + +       + +  +++A + + GF P   +Y +++   C+ K   
Sbjct: 250 KDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFR 309

Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
           +   V++ M E G   + +T+  ++  L +GK + +A  + E MK     PD + Y+ L+
Sbjct: 310 KVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLI 369

Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
                 G L     V + M ++    D  TY+ ++  AC   + E+A  LL +M +    
Sbjct: 370 YILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCK 429

Query: 241 VLYSTYAHVMGALLR 255
              +TY+ ++    R
Sbjct: 430 PDLNTYSPLLKMCCR 444



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 84/206 (40%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           ++ LI   CK +K+D AL+ +  M E GF    I++  I+    R K   +   ++  M+
Sbjct: 260 FNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEME 319

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
           E    P++  Y  ++ A      ++    V +KM+      D   Y +L+    +AGR++
Sbjct: 320 EKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLK 379

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
           +A  +   M   G      TY  ++ A         A+K ++       K D   +  L 
Sbjct: 380 DARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLL 439

Query: 286 SKLIGLERFNEANFILKEMNKRDLKM 311
                  R    + +L  M K D+ +
Sbjct: 440 KMCCRNNRMKVLSALLNHMFKNDISL 465



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 1/152 (0%)

Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
           ++Y++++  L KLKK D    +V+ M   G  +S  T   ++  L R  R ++A      
Sbjct: 154 NSYNSMVDILGKLKKFDLMWELVEEMDRLGGYVSLATMTKVMRRLARASRWKDAIEAFRG 213

Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           M+   V  D  A N L+ A   + ++   + V  + ++  L  +  T++ L+ G C+A +
Sbjct: 214 MERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFKDSIL-LNPHTFNVLIHGWCKARK 272

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
           ++ A   +  M + G      +Y  ++ A  R
Sbjct: 273 MDNALKSMAEMKEHGFCPDVISYTSIVEAYCR 304


>gi|357124808|ref|XP_003564089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Brachypodium distachyon]
          Length = 502

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 82/167 (49%)

Query: 97  DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
           D   P +  Y+ +I   C+L ++D+A  +   M +     +A  +  +++  +R   +E 
Sbjct: 256 DHIVPDQLTYNVIINGFCRLGQVDKARTIFGFMRKNECEPNAFNYATLMNGHSRKGELEN 315

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
              + E MK   V PD  +Y  L+   C  G++     ++++M E+   AD  TY+ L+ 
Sbjct: 316 LRMVFEEMKSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVREMREKGCKADVVTYNLLIE 375

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
           G C+  R+ EA  LLR +  +G  +  ++Y  VM +L   G   +AV
Sbjct: 376 GLCKDKRMVEAMDLLRSLPLEGVQLNVASYRIVMNSLCSCGDMEKAV 422



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 7/227 (3%)

Query: 85  VLSDLCRTLARLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE---GGFGLSA 138
           VLSDL   L      +   P    Y+ LI    K    + A RV+D M E   G    + 
Sbjct: 167 VLSDLIADLRDPRNKYLPTPNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNL 226

Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEI-RVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
           +T+  ++  L R  +M+EA+ L E M E   + PD   YN ++  +C  G +     +  
Sbjct: 227 VTYSTLIGGLCRAGKMKEAFELFEEMIEKDHIVPDQLTYNVIINGFCRLGQVDKARTIFG 286

Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
            M + +   +A  Y  L+ G  R G +E   ++   M   G      +Y  ++G L R G
Sbjct: 287 FMRKNECEPNAFNYATLMNGHSRKGELENLRMVFEEMKSAGVEPDAVSYTALIGCLCRHG 346

Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
              + +  V     +  K D   +  L   L   +R  EA  +L+ +
Sbjct: 347 SVDEGIDLVREMREKGCKADVVTYNLLIEGLCKDKRMVEAMDLLRSL 393



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   +Y  LIG LC+   +DE + +V  M E G     +T++ ++  L + KRM EA  L
Sbjct: 330 PDAVSYTALIGCLCRHGSVDEGIDLVREMREKGCKADVVTYNLLIEGLCKDKRMVEAMDL 389

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  +    V  ++ +Y  ++ + C  G++    G+L  M            + L++G C 
Sbjct: 390 LRSLPLEGVQLNVASYRIVMNSLCSCGDMEKAVGLLGLMLGRGFLPHYAASNDLLIGLCG 449

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
            GRV +A V L  +   G     S +  ++ A+ R
Sbjct: 450 VGRVADATVALYGLASVGFKPDTSCWGKLVEAVCR 484



 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 13/212 (6%)

Query: 85  VLSDLCRTLARLDK-----GFPRKSA-------YDTLIGRLCKLKKIDEALRVVDIMAEG 132
           +++  CR L ++DK     GF RK+        Y TL+    +  +++    V + M   
Sbjct: 268 IINGFCR-LGQVDKARTIFGFMRKNECEPNAFNYATLMNGHSRKGELENLRMVFEEMKSA 326

Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
           G    A+++  ++  L R   ++E   L+  M+E     D+  YN L+   C    +   
Sbjct: 327 GVEPDAVSYTALIGCLCRHGSVDEGIDLVREMREKGCKADVVTYNLLIEGLCKDKRMVEA 386

Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
             +L+ +  E +  +  +Y  ++   C  G +E+A  LL  M+  G    Y+    ++  
Sbjct: 387 MDLLRSLPLEGVQLNVASYRIVMNSLCSCGDMEKAVGLLGLMLGRGFLPHYAASNDLLIG 446

Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
           L  +G  A A   +        K DT  +G L
Sbjct: 447 LCGVGRVADATVALYGLASVGFKPDTSCWGKL 478



 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 22/219 (10%)

Query: 32  EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
           EP +  Y  L+N    + +LE +R +         F    +     +  +  +++  LCR
Sbjct: 294 EPNAFNYATLMNGHSRKGELENLRMV---------FEEMKSAGVEPDAVSYTALIGCLCR 344

Query: 92  TLARLDKGFP-----RKSA-------YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
               +D+G       R+         Y+ LI  LCK K++ EA+ ++  +   G  L+  
Sbjct: 345 H-GSVDEGIDLVREMREKGCKADVVTYNLLIEGLCKDKRMVEAMDLLRSLPLEGVQLNVA 403

Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
           ++  +++ L     ME+A GL+ +M      P   A N LL   C  G +   +  L  +
Sbjct: 404 SYRIVMNSLCSCGDMEKAVGLLGLMLGRGFLPHYAASNDLLIGLCGVGRVADATVALYGL 463

Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
                  D   +  LV   CR  ++  +  LL  ++ +G
Sbjct: 464 ASVGFKPDTSCWGKLVEAVCRDRKLRRSVELLDVLITEG 502


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 4/214 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIM----AEGGFGLSAITFHPILSVLTRGKRMEE 156
           P   +Y+ L+  LC   +  +AL ++  M      GG     +++  +++ L R  ++++
Sbjct: 165 PNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDK 224

Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
           A+ L + M +  +SP+   YN LL  YC  G      G+ +KM  + +  D  TY+ L++
Sbjct: 225 AYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMV 284

Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
             C+ GR  EA  +   MV  G     S Y  ++      GY  Q  + + V      + 
Sbjct: 285 YLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQP 344

Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           D  +F  L          +EA     +M ++ L 
Sbjct: 345 DHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLH 378



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 43/289 (14%)

Query: 22  SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
           S  K G  PD   S+ Y  L++    E  L  +  LL+   R+        FN +     
Sbjct: 301 SMVKKGHKPD---SSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYA 357

Query: 82  SLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVD-IMAEG------ 132
              ++ +     +++ +    P    Y T++  LC++ K+D+A+   D +++EG      
Sbjct: 358 KHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGV 417

Query: 133 ----------------------------GFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
                                       G   + I F+ +L+ L +   +  A  + ++M
Sbjct: 418 VFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLM 477

Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
             + V  D+  Y  L+  YC  G +   + +L+ M  + +  +  TY+ ++ G C+ GR+
Sbjct: 478 VRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRI 537

Query: 225 EEAFVLLRRMVDDGQS---VLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
           E+A  L R+M   G +   V+YST  H +    R+    +   +++ CG
Sbjct: 538 EDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCG 586



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 1/215 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           LD+G  P    Y+ L+   C   K  EA+ +   M   G     +T++ ++  L +  R 
Sbjct: 233 LDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRS 292

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            EA  + + M +    PD + Y  LL  Y  +G L     +L  M       D   ++ L
Sbjct: 293 MEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNIL 352

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           +    + G V+EA +   +M   G      TY  VM AL R+G    A+          +
Sbjct: 353 IGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGL 412

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
             +  +F +L   L   +++++A  +  EM  R +
Sbjct: 413 TPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGI 447



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 100 FPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
            PR     Y  +IG   +   +D A   +  +   G+   AITF P+L  L   KR  +A
Sbjct: 91  MPRADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDA 150

Query: 158 WGL-MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM--EEEKLGA--DARTYD 212
             + +  M  +  +P+  +YN LL   C +        +L  M  ++ + G   D  +Y 
Sbjct: 151 MDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYT 210

Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVMVCGG 271
            ++ G  R G++++A+ L   M+D G S    TY  ++      G   +A+  F  +C  
Sbjct: 211 TVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMC-- 268

Query: 272 RD-IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           RD ++ D   + +L   L    R  EA  +   M K+  K
Sbjct: 269 RDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHK 308



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 1/161 (0%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           Y+ ++  LC+    D+ALR+   +    F L   TF+ ++  L +G R +EA  L   + 
Sbjct: 594 YNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLL 653

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y  ++ +   +G L     +   +E+    AD+R  +ALV    + G V 
Sbjct: 654 ARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALVGKLPQKGEVR 713

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
           +A V L + +D+    L ++ A  +  L+  G Y Q +  +
Sbjct: 714 KAGVYLSK-IDENNFSLEASTAESLVFLVSSGKYDQHINSI 753



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 10/217 (4%)

Query: 96  LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
           LD   P +  Y+T+I   CK  +I++A  +   MA  G     + +  IL  L + +R+ 
Sbjct: 514 LDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIA 573

Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
            A  L   M +  +   +  YN +L   C          +   +         RT++ ++
Sbjct: 574 AAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMI 633

Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
               + GR +EA  L   ++  G      TY  +M +L+  G   +     +        
Sbjct: 634 DALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCT 693

Query: 276 LDTELFGSLGSKL----------IGLERFNEANFILK 302
            D+ +  +L  KL          + L + +E NF L+
Sbjct: 694 ADSRMLNALVGKLPQKGEVRKAGVYLSKIDENNFSLE 730


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 1/219 (0%)

Query: 96  LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
           +D+G  P K AY+ LI   C    + +A  ++  +   G  L  + F  I++ L +  R+
Sbjct: 469 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 528

Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
            +A  + ++   + + PD   Y+ L+  YC  G +     V   M    +  +   Y  L
Sbjct: 529 MDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTL 588

Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
           V G C+ GR++E   L R M+  G       Y+ ++  L + G    A           I
Sbjct: 589 VNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGI 648

Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313
            +D   +  +   L     F+EA F+ KE+   ++K+  
Sbjct: 649 AMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 687



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 13/287 (4%)

Query: 21  RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLET----VRYLLNKRARDCCFNTANTFNFI 76
           +   + G  PD  T   Y+ +V+A    R ++     +R ++NKR          T+N +
Sbjct: 256 KEMVQRGIPPDLVT---YNSVVHALCKARAMDKAEAFLRQMVNKRV----LPNNWTYNNL 308

Query: 77  TNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134
               +S     +  R    + +    P       L+G LCK  KI EA  V D MA  G 
Sbjct: 309 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 368

Query: 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194
                +++ +L+       + +   L ++M    ++PD   +N L+ AY   G L     
Sbjct: 369 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMI 428

Query: 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
           +  +M +  +  D  TY  ++   CR G++++A     +M+D G +     Y  ++    
Sbjct: 429 IFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 488

Query: 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
             G   +A + +       + LD   F S+ + L  L R  +A  I 
Sbjct: 489 THGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF 535



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 98/212 (46%), Gaps = 4/212 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    ++ LI        +D+A+ + + M + G     +T+  +++ L R  +M++A   
Sbjct: 405 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 464

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
              M +  V+PD  AYN L+  +C  G+L     ++ ++    +  D   + +++   C+
Sbjct: 465 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 524

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF--VMVCGGRDIKLDT 278
            GRV +A  +    V+ G       Y+ +M     +G   +A++    MV  G  I+ + 
Sbjct: 525 LGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG--IEPNV 582

Query: 279 ELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
            ++ +L +    + R +E   + +EM +R +K
Sbjct: 583 VVYCTLVNGYCKIGRIDEGLSLFREMLQRGIK 614



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 82/210 (39%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P   AY+T+I    K   +++A  +   M + G     +T++ ++  L + + M++A   
Sbjct: 230 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 289

Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
           +  M   RV P+   YN L+  Y   G       V K+M    +  D  T   L+   C+
Sbjct: 290 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 349

Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
            G+++EA  +   M   GQ+    +Y  ++      G          +  G  I  D   
Sbjct: 350 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 409

Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
           F  L          ++A  I  EM    +K
Sbjct: 410 FNVLIKAYANCGMLDKAMIIFNEMRDHGVK 439



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/204 (18%), Positives = 87/204 (42%)

Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           + ++I  LCKL ++ +A  + D+    G    A+ +  ++       +ME+A  + + M 
Sbjct: 515 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 574

Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
              + P++  Y  L+  YC  G +     + ++M +  +      Y  ++ G  +AGR  
Sbjct: 575 SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTV 634

Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
            A +    M + G ++   TY  V+  L +   + +A+         ++K++     ++ 
Sbjct: 635 PAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 694

Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
             +    R  EA  +   +++  L
Sbjct: 695 DGMFQTRRVEEAKDLFASISRSRL 718



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEAW 158
           P   +Y  L+  LC   K  +A  ++ +MAEGG   S   + ++ ++    +   + +A 
Sbjct: 193 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 252

Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
            L + M +  + PDL  YN ++ A C    +      L++M  +++  +  TY+ L+ G 
Sbjct: 253 DLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGY 312

Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
              G+ +EA  + + M          T + +MG+L + G   +A
Sbjct: 313 SSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 356



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 107 DTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
           + L+   C+ K+ DEAL ++     E G      ++  +L  L    +  +A  L+ +M 
Sbjct: 163 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 222

Query: 166 E--IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
           E     SP++ AYN ++  +  +G++     + K+M +  +  D  TY+++V   C+A  
Sbjct: 223 EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARA 282

Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
           +++A   LR+MV+        TY +++      G + +AV+
Sbjct: 283 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVR 323



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 42/228 (18%)

Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
           P    Y TL+   CK+ +IDE L +   M + G   S I +  I+  L +  R   A   
Sbjct: 580 PNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMK 639

Query: 161 MEVMKEIRVSPDLTAYNYLLTAY----CF---------------KGNLTATSGVL----- 196
              M E  ++ D+  YN +L       CF               K N+   + ++     
Sbjct: 640 FHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQ 699

Query: 197 -KKMEEEK----------LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
            +++EE K          L  +  TY  ++    + G VEEA  +   M + G       
Sbjct: 700 TRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRL 759

Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD-------TELFGSLGS 286
             HV+  LL+     +A  ++     R+  L+        +LF S G+
Sbjct: 760 LNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGT 807


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.138    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,824,949,157
Number of Sequences: 23463169
Number of extensions: 194417479
Number of successful extensions: 501400
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4753
Number of HSP's successfully gapped in prelim test: 1877
Number of HSP's that attempted gapping in prelim test: 444425
Number of HSP's gapped (non-prelim): 36889
length of query: 324
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 182
effective length of database: 9,027,425,369
effective search space: 1642991417158
effective search space used: 1642991417158
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)