BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038109
(324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LY43|PP283_ARATH Pentatricopeptide repeat-containing protein At3g56030
OS=Arabidopsis thaliana GN=At3g56030 PE=2 SV=2
Length = 351
Score = 315 bits (808), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 167/335 (49%), Positives = 227/335 (67%), Gaps = 14/335 (4%)
Query: 1 MSLLRKL-----PTKFLIPQSVLVTRSFT----KSGAFPDEPTSAYYDDLVNAAGHERDL 51
MSLLR+ ++FL+ QS+ RSF+ A P T +D+L+ AG D
Sbjct: 16 MSLLRRFVKEANNSRFLL-QSI-SGRSFSTVNPNPTASPGRRTCVEFDNLIFKAGSSGDF 73
Query: 52 ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIG 111
E VR LLN R + CFNT TF F+TNT++ S L DL R L + D G+ RK +Y+TLI
Sbjct: 74 EAVRRLLNSRVVNACFNTTATFKFLTNTDSYSSSLEDLRRILPQTDAGYTRKHSYETLIA 133
Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
RLCKL +ID+AL +++ MA G FGLS FHPIL+ LT+ R+EEAW ++E+M+ +
Sbjct: 134 RLCKLGRIDDALVLINDMAIGEFGLSTCVFHPILNTLTKKNRIEEAWRVVELMRSHAIPV 193
Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA---DARTYDALVLGACRAGRVEEAF 228
D+T+YNY LT++C+ G++ S VL+KMEEE+ G D RTYDALVLGAC++GRVE A
Sbjct: 194 DVTSYNYFLTSHCYDGDVAEASRVLRKMEEEEEGVMSPDTRTYDALVLGACKSGRVEAAM 253
Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
+LRRM ++G SVLY+T+AHV+G ++ GYYA +V+FVM G+D +LD E GSL SKL
Sbjct: 254 AILRRMEEEGLSVLYATHAHVIGEMVESGYYALSVEFVMAYAGKDKRLDEENLGSLASKL 313
Query: 289 IGLERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323
I +RF EA +LKEM+ R L+MG LR+++E NV
Sbjct: 314 IKRKRFKEAKMVLKEMSVRGLRMGDALREFHEKNV 348
>sp|Q9S733|PP196_ARATH Pentatricopeptide repeat-containing protein At2g40240,
mitochondrial OS=Arabidopsis thaliana GN=At2g40240 PE=2
SV=1
Length = 351
Score = 309 bits (792), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/328 (49%), Positives = 218/328 (66%), Gaps = 4/328 (1%)
Query: 1 MSLLR----KLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRY 56
MSLLR K + +L RSF+ P + +D L+N AG D ETVR
Sbjct: 1 MSLLRRRFVKQSVNCITFLQILAERSFSTVKIPPGRRKTTEFDKLINEAGSSGDFETVRR 60
Query: 57 LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKL 116
LLN R FNT++TF F+TNT + S L DL R L ++D GF RK+AYD LI RLCKL
Sbjct: 61 LLNNRIVLGSFNTSDTFKFLTNTASYSSYLEDLRRVLPQIDGGFSRKNAYDILISRLCKL 120
Query: 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176
+ID+AL V+ M+ G GL+ T+HPIL LTR ++EEAW ++E M+ VS D+TAY
Sbjct: 121 GRIDDALIVIGDMSNGRLGLTPSTYHPILCSLTRKYKIEEAWRVVESMRSKSVSMDVTAY 180
Query: 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
NY LT++C+ G L + S V++K+EE+ D+R+YDALVLGACRAG+VE A +LRRM +
Sbjct: 181 NYFLTSHCYDGELESASEVMRKIEEDGNSPDSRSYDALVLGACRAGKVEAAMAILRRMEE 240
Query: 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296
DG +VLYST+AHV+ L+ GYYA ++FVM G+D++LD+E FG L KL+ +R+ E
Sbjct: 241 DGVTVLYSTHAHVITGLVEGGYYALGLEFVMAYAGKDLRLDSESFGFLAGKLVKRKRYEE 300
Query: 297 ANFILKEMNKRDLKMGFKLRDYYEINVK 324
A ++KEM R L+MG +LR +YE NV+
Sbjct: 301 AMIVVKEMVMRGLRMGDELRQFYEGNVR 328
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 99/204 (48%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y TLI C++ IDEALR+ ++M GF +T++ IL L R+ EA L+ M
Sbjct: 310 YTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMS 369
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
++ PD N L+ AYC ++ + V KKM E L D +Y AL+ G C+ +E
Sbjct: 370 GKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELE 429
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
A L M++ G S Y+TY+ ++ + K + R + D L+ L
Sbjct: 430 NAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLI 489
Query: 286 SKLIGLERFNEANFILKEMNKRDL 309
++ LE+ + A + + M K+ L
Sbjct: 490 RRICKLEQVDYAKVLFESMEKKGL 513
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 1/210 (0%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P A L+ L K + D ++ M + G + ++ ++ ++ E+A L
Sbjct: 166 PHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKL 225
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M+E V PD+ YN L++ YC K V +ME + + TY++ + G R
Sbjct: 226 LSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSR 285
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
GR+ EA L R + DD + + TY ++ R+ +A++ V R
Sbjct: 286 EGRMREATRLFREIKDD-VTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVT 344
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
+ S+ KL R EAN +L EM+ + ++
Sbjct: 345 YNSILRKLCEDGRIREANRLLTEMSGKKIE 374
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 18/224 (8%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +TLI CK++ + A++V M E G L ++ ++ + +E A
Sbjct: 375 PDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEE 434
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M E SP Y++L+ + + + +L++ E+ L AD Y L+ C+
Sbjct: 435 LFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICK 494
Query: 221 AGRVEEAFVLLRRMVDD---GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
+V+ A VL M G SV+++T A+ A R G +A V R + ++
Sbjct: 495 LEQVDYAKVLFESMEKKGLVGDSVIFTTMAY---AYWRTGKVTEASALFDVMYNRRLMVN 551
Query: 278 TELFGSLGSKLIG---LERFNEANF---------ILKEMNKRDL 309
+L+ S+ + G + RF ++ IL+EMN+ ++
Sbjct: 552 LKLYKSISASYAGDNDVLRFFWSHVGDRCLISKSILREMNRSEV 595
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 95/207 (45%), Gaps = 1/207 (0%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
Y+ L+ K ++A +++ M E G T++ ++SV + EA + + M
Sbjct: 205 VYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRM 264
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
+ V+P++ YN + + +G + + + ++++++ + A+ TY L+ G CR +
Sbjct: 265 ERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDD-VTANHVTYTTLIDGYCRMNDI 323
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
+EA L M G S TY ++ L G +A + + G+ I+ D +L
Sbjct: 324 DEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTL 383
Query: 285 GSKLIGLERFNEANFILKEMNKRDLKM 311
+ +E A + K+M + LK+
Sbjct: 384 INAYCKIEDMVSAVKVKKKMIESGLKL 410
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 5/266 (1%)
Query: 2 SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
+L+ L + + ++ + R T G PD T ++ L+ R+ L +
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCT---FNSLIQGLCLTRNHRVAMELFEEM 426
Query: 62 ARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGFPRKS-AYDTLIGRLCKLKKI 119
C T+N + ++ S L + L +++ G R Y+TLI CK K
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486
Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
EA + D M G +++T++ ++ L + +R+E+A LM+ M PD YN L
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
LT +C G++ + +++ M D TY L+ G C+AGRVE A LLR + G
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606
Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKF 265
++ Y V+ L R +A+
Sbjct: 607 NLTPHAYNPVIQGLFRKRKTTEAINL 632
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 138/338 (40%), Gaps = 68/338 (20%)
Query: 25 KSGAFPDEPTSAYYDDLVNA---AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTEN 81
+ G FPD+ T ++ LVN AGH + + ++ + D T N
Sbjct: 288 QDGFFPDQYT---FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYN---------- 334
Query: 82 SLSVLSDLCR------TLARLDKGF-----PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
SV+S LC+ + LD+ P Y+TLI LCK +++EA + ++
Sbjct: 335 --SVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 131 EGGFGLSAITFHPILS--VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
G TF+ ++ LTR R+ A L E M+ PD YN L+ + C KG
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRV--AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450
Query: 189 LTATSGVLKKME---------------------------EE--------KLGADARTYDA 213
L +LK+ME EE + ++ TY+
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510
Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
L+ G C++ RVE+A L+ +M+ +GQ TY ++ R G +A V
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
+ D +G+L S L R A+ +L+ + + + +
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL 608
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 115/267 (43%), Gaps = 6/267 (2%)
Query: 3 LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
L++ L + ++L+ G PDE T + ++ E DL+ + +
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKT---FTTVMQGYIEEGDLDGALRIREQMV 251
Query: 63 RDCCFNTANTFNFITN---TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKI 119
C + + N I + E + + + ++ D FP + ++TL+ LCK +
Sbjct: 252 EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHV 311
Query: 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
A+ ++D+M + G+ T++ ++S L + ++EA +++ M SP+ YN L
Sbjct: 312 KHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTL 371
Query: 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239
++ C + + + + + + + + D T+++L+ G C A L M G
Sbjct: 372 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431
Query: 240 SVLYSTYAHVMGALLRLGYYAQAVKFV 266
TY ++ +L G +A+ +
Sbjct: 432 EPDEFTYNMLIDSLCSKGKLDEALNML 458
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 101/216 (46%), Gaps = 5/216 (2%)
Query: 27 GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
G PDE T Y+ L+++ + L+ +L + C + T+N + + +
Sbjct: 430 GCEPDEFT---YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486
Query: 87 SDLCRTLARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
+ ++ G R S Y+TLI LCK +++++A +++D M G T++ +
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
L+ RG +++A +++ M PD+ Y L++ C G + S +L+ ++ + +
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606
Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
Y+ ++ G R + EA L R M++ ++
Sbjct: 607 NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEA 642
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 1/198 (0%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P S ++ LI LC+ ++ A+ +++ M G TF ++ ++ A +
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRI 246
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME-EEKLGADARTYDALVLGAC 219
E M E S + N ++ +C +G + +++M ++ D T++ LV G C
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
+AG V+ A ++ M+ +G TY V+ L +LG +AV+ + RD +T
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTV 366
Query: 280 LFGSLGSKLIGLERFNEA 297
+ +L S L + EA
Sbjct: 367 TYNTLISTLCKENQVEEA 384
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 1/185 (0%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + + T++ + +D ALR+ + M E G S ++ + I+ + R+E+A
Sbjct: 222 PDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNF 281
Query: 161 MEVM-KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
++ M + PD +N L+ C G++ ++ M +E D TY++++ G C
Sbjct: 282 IQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC 341
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
+ G V+EA +L +M+ S TY ++ L + +A + V + I D
Sbjct: 342 KLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVC 401
Query: 280 LFGSL 284
F SL
Sbjct: 402 TFNSL 406
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 124/302 (41%), Gaps = 9/302 (2%)
Query: 14 PQSVLVTRSFTKSGAFPD-EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
P R F + P+ P A Y++++ G + ++ +L C +T
Sbjct: 61 PDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTST 120
Query: 73 FNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDT-LIGRLCKLKKIDEALRVVDI--- 128
F + + + ++ + + F K DT R+ L +L++V+I
Sbjct: 121 FLILIESYAQFELQDEILSVVDWMIDEFGLKP--DTHFYNRMLNLLVDGNSLKLVEISHA 178
Query: 129 -MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
M+ G TF+ ++ L R ++ A ++E M + PD + ++ Y +G
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238
Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD-DGQSVLYSTY 246
+L + ++M E + + +V G C+ GRVE+A ++ M + DG T+
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
++ L + G+ A++ + V D + S+ S L L EA +L +M
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358
Query: 307 RD 308
RD
Sbjct: 359 RD 360
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y TLI LCK +++ A +++ + G L+ ++P++ L R ++ EA L
Sbjct: 573 PDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINL 632
Query: 161 M-EVMKEIRVSPDLTAYNYLLTAYCFKG 187
E++++ PD +Y + C G
Sbjct: 633 FREMLEQNEAPPDAVSYRIVFRGLCNGG 660
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 16/224 (7%)
Query: 76 ITNTENSLS---VLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKID 120
+T NS+S ++ LC + RL++ F P Y LI LC ID
Sbjct: 260 VTCAPNSVSYSILIHGLCE-VGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLID 318
Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
+A + D M G + T+ ++ L R ++EEA G+ M + R+ P + YN L+
Sbjct: 319 KAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALI 378
Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
YC G + +L ME+ + RT++ L+ G CR G+ +A LL+RM+D+G S
Sbjct: 379 NGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLS 438
Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
+Y ++ L R G+ A K + DI+ D F ++
Sbjct: 439 PDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAI 482
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 2/211 (0%)
Query: 96 LDKGFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMA-EGGFGLSAITFHPILSVLTRGKR 153
L GF S T L+ C+ + +AL+V D+M+ E +++++ ++ L R
Sbjct: 222 LKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGR 281
Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
+EEA+GL + M E P Y L+ A C +G + + +M + TY
Sbjct: 282 LEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTV 341
Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
L+ G CR G++EEA + R+MV D TY ++ + G A + + V R
Sbjct: 342 LIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA 401
Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEM 304
K + F L L + + +A +LK M
Sbjct: 402 CKPNVRTFNELMEGLCRVGKPYKAVHLLKRM 432
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 105/229 (45%), Gaps = 4/229 (1%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSD 88
+P++ Y L+ A ++ L ++ C +T+ + + + + +
Sbjct: 298 QPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANG 357
Query: 89 LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
+CR + + D+ FP Y+ LI CK ++ A ++ +M + + TF+ ++ L
Sbjct: 358 VCRKMVK-DRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416
Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
R + +A L++ M + +SPD+ +YN L+ C +G++ +L M + D
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDC 476
Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
T+ A++ C+ G+ + A L M+ G S+ T ++ + ++G
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVG 525
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 90/177 (50%)
Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
TLI +CK+ K +AL +++ + + + + + IL +L++G +++E ++ + ++
Sbjct: 516 TLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKL 575
Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
+ P + Y L+ G++T + +L+ M+ + Y ++ G C+ GRVEEA
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635
Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
LL M D G S + TY ++ + G +A++ V R +L+ ++ SL
Sbjct: 636 EKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSL 692
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 88/206 (42%), Gaps = 2/206 (0%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
+P Y L++ + +E + K +D F + T+N + N +
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFE 392
Query: 92 TLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
L ++K P ++ L+ LC++ K +A+ ++ M + G ++++ ++ L
Sbjct: 393 LLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLC 452
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
R M A+ L+ M + PD + ++ A+C +G S L M + + D
Sbjct: 453 REGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEV 512
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMV 235
T L+ G C+ G+ +A +L +V
Sbjct: 513 TGTTLIDGVCKVGKTRDALFILETLV 538
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 27/231 (11%)
Query: 25 KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
+ G DE T D V G RD ++L + T ++ N I L
Sbjct: 504 RKGISLDEVTGTTLIDGVCKVGKTRD---ALFILETLVKMRILTTPHSLNVI------LD 554
Query: 85 VLSDLCRT------LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
+LS C+ L +++K G P Y TL+ L + I + R++++M G
Sbjct: 555 MLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLP 614
Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
+ + I++ L + R+EEA L+ M++ VSP+ Y ++ Y G L +
Sbjct: 615 NVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETV 674
Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
+ M E + R Y +L+ G FVL ++ +D+ + S A
Sbjct: 675 RAMVERGYELNDRIYSSLLQG----------FVLSQKGIDNSEESTVSDIA 715
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 18/278 (6%)
Query: 3 LLRKLPTKFLIPQSVLVTR---SFTKSGAFPD-------------EPTSAYYDDLVNAAG 46
L ++ K L P SV T + K+G D P Y L++
Sbjct: 408 LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 467
Query: 47 HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKSA 105
E DL++ LL++ + T+N I N + + + + + G +
Sbjct: 468 KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 527
Query: 106 -YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
Y TL+ CK ++D+A ++ M G + +TF+ +++ +E+ L+ M
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
++P+ T +N L+ YC + NL A + + K M +G D +TY+ LV G C+A +
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+EA+ L + M G SV STY+ ++ L+ + +A
Sbjct: 648 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEA 685
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 7/249 (2%)
Query: 66 CFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEAL 123
C+N A ++N + + L + + L ++ KG+ P +Y T++ C+ ++D+
Sbjct: 243 CWNVA-SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVW 301
Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
+++++M G ++ + I+ +L R ++ EA M + PD Y L+ +
Sbjct: 302 KLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGF 361
Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
C +G++ A S +M + D TY A++ G C+ G + EA L M G
Sbjct: 362 CKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDS 421
Query: 244 STYAHVMGALLRLGYYAQA--VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
T+ ++ + G+ A V M+ G + T + +L L + AN +L
Sbjct: 422 VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVT--YTTLIDGLCKEGDLDSANELL 479
Query: 302 KEMNKRDLK 310
EM K L+
Sbjct: 480 HEMWKIGLQ 488
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 88/207 (42%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + LI CK + +A RV + M + G + +T+ ++ L + ++ A L
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 478
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M +I + P++ YN ++ C GN+ ++ + E L AD TY L+ C+
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
+G +++A +L+ M+ G T+ +M G K + + I +
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKR 307
F SL + A I K+M R
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSR 625
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 93/238 (39%), Gaps = 11/238 (4%)
Query: 84 SVLSDLCRT--LARLDKGF---------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
S++ LCR LA ++ F P Y TLI CK I A + M
Sbjct: 321 SIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 380
Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
+T+ I+S + M EA L M + PD + L+ YC G++
Sbjct: 381 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 440
Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
V M + + TY L+ G C+ G ++ A LL M G TY ++
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 500
Query: 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
L + G +AVK V + DT + +L ++A ILKEM + L+
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ 558
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 86/190 (45%), Gaps = 6/190 (3%)
Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
K A+ V E G + +++ ++ + + R++EA L+ +M+ +PD+ +Y+
Sbjct: 226 KTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 285
Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
++ YC G L +++ M+ + L ++ Y +++ CR ++ EA M+
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345
Query: 238 G---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
G +V+Y+T ++ + G A KF RDI D + ++ S +
Sbjct: 346 GILPDTVVYTT---LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 402
Query: 295 NEANFILKEM 304
EA + EM
Sbjct: 403 VEAGKLFHEM 412
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 5/202 (2%)
Query: 13 IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
I ++V + F +G D T Y L++A +++ + +L + T T
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVT---YTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 563
Query: 73 FNFITNTENSLSVLSDLCRTL-ARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
FN + N +L D + L L KG P + +++L+ + C + A + M
Sbjct: 564 FNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMC 623
Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
G G T+ ++ + + M+EAW L + MK S ++ Y+ L+ + +
Sbjct: 624 SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 683
Query: 191 ATSGVLKKMEEEKLGADARTYD 212
V +M E L AD +D
Sbjct: 684 EAREVFDQMRREGLAADKEIFD 705
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 9/201 (4%)
Query: 115 KLKKIDEALRVVDIMAEG--GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
KL D ++ D++ +G F VL + EA + E M +
Sbjct: 150 KLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLS 209
Query: 173 LTAYNYLLTAY---CFKGNLTATSG-VLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
+ + N LT C+K TAT+ V ++ E + + +Y+ ++ C+ GR++EA
Sbjct: 210 VDSCNVYLTRLSKDCYK---TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAH 266
Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
LL M G + +Y+ V+ R G + K + V + +K ++ ++GS+ L
Sbjct: 267 HLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLL 326
Query: 289 IGLERFNEANFILKEMNKRDL 309
+ + EA EM ++ +
Sbjct: 327 CRICKLAEAEEAFSEMIRQGI 347
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 14/156 (8%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLS 84
+PT ++ L+N LE LLN A TFN + N + + +
Sbjct: 558 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATA 617
Query: 85 VLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
+ D+C +G P Y+ L+ CK + + EA + M GF +S T+
Sbjct: 618 IYKDMC------SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSV 671
Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179
++ + K+ EA + + M+ ++ D +++
Sbjct: 672 LIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 707
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 146/309 (47%), Gaps = 9/309 (2%)
Query: 4 LRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR 63
L + P+ F I + V K G + T ++ LVN E LE +L +
Sbjct: 176 LVRYPSSFSISSAREVFDDMVKIGVSLNVQT---FNVLVNGYCLEGKLEDALGMLERMVS 232
Query: 64 DCCFNTAN-TFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKID 120
+ N N T+N I + LSDL L + K P + Y+ L+ CKL +
Sbjct: 233 EFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLK 292
Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
EA ++V++M + T++ +++ L M E LM+ MK +++ PD+ YN L+
Sbjct: 293 EAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLI 352
Query: 181 TAYCFKGNLTATS-GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD-DG 238
CF+ L+ + ++++ME + + A+ T++ + C+ + E ++ +VD G
Sbjct: 353 DG-CFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHG 411
Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298
S TY ++ A L++G + A++ + G + IK++T ++ L + +EA+
Sbjct: 412 FSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAH 471
Query: 299 FILKEMNKR 307
+L +KR
Sbjct: 472 NLLNSAHKR 480
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 105/205 (51%), Gaps = 3/205 (1%)
Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
+T++ LCK +K+DEA +++ + GF + +T+ ++ R +++E+A + + MK+
Sbjct: 455 NTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKK 514
Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
++++P ++ +N L+ C G ++ E L D T+++++LG C+ GRVE+
Sbjct: 515 VKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEK 574
Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV-MVCGGRDIKLDTELFGSLG 285
AF + T ++ L + G +A+ F + R++ DT + ++
Sbjct: 575 AFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV--DTVTYNTMI 632
Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
S ++ EA +L EM ++ L+
Sbjct: 633 SAFCKDKKLKEAYDLLSEMEEKGLE 657
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P S +++LIG LC K + A+ D +AE G TF+ I+ + R+E+A+
Sbjct: 519 PTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEF 578
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ PD N LL C +G + EE+ D TY+ ++ C+
Sbjct: 579 YNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEER-EVDTVTYNTMISAFCK 637
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG------RDI 274
+++EA+ LL M + G TY + L+ G ++ + + G RD+
Sbjct: 638 DKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFGSMKRDL 697
Query: 275 KLDTE 279
+++TE
Sbjct: 698 QVETE 702
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 1/168 (0%)
Query: 99 GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
GF P Y TLI K+ + AL ++ M + G ++ IT + IL L + ++++EA
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEA 470
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
L+ + D Y L+ + + + + +M++ K+ T+++L+ G
Sbjct: 471 HNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGG 530
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
C G+ E A + + G ST+ ++ + G +A +F
Sbjct: 531 LCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEF 578
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 1/146 (0%)
Query: 113 LCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
LCK +K + R V +++ GF +T+H ++ + + A +M M + +
Sbjct: 390 LCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKM 449
Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
+ N +L A C + L +L + D TY L++G R +VE+A +
Sbjct: 450 NTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMW 509
Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLG 257
M + ST+ ++G L G
Sbjct: 510 DEMKKVKITPTVSTFNSLIGGLCHHG 535
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 2/277 (0%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
PT ++ L +A + E V L + ++ T + + N LS T
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 93 LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
+ ++ K G+ P ++TL+ LC ++ EAL +VD M E G + IT + +++ L
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
++ +A L++ M E P+ Y +L C G +L+KMEE + DA
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
Y ++ G C+ G ++ AF L M G TY ++G G + K +
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325
Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
R I + F L + + EA+ +LKEM +R
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQR 362
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 95/197 (48%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +TL+ LC K+ +A+ ++D M E GF + +T+ P+L+V+ + + A L
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL 250
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M+E + D Y+ ++ C G+L + +ME + AD TY+ L+ G C
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
AGR ++ LLR M+ S T++ ++ + ++ G +A + + R I +T
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370
Query: 281 FGSLGSKLIGLERFNEA 297
+ SL R EA
Sbjct: 371 YNSLIDGFCKENRLEEA 387
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 92/206 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y++LI CK +++EA+++VD+M G +TF+ +++ + R+++ L
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLEL 425
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M V + YN L+ +C G L + ++M ++ D +Y L+ G C
Sbjct: 426 FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCD 485
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G +E+A + ++ + Y ++ + A + +KLD
Sbjct: 486 NGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARA 545
Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
+ + S+L + ++A+ + ++M +
Sbjct: 546 YNIMISELCRKDSLSKADILFRKMTE 571
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 69/133 (51%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y +I LCK +D A + + M GF IT++ ++ R ++ L+ M
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+ ++SP++ ++ L+ ++ +G L +LK+M + + + TY++L+ G C+ R+E
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385
Query: 226 EAFVLLRRMVDDG 238
EA ++ M+ G
Sbjct: 386 EAIQMVDLMISKG 398
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 1/190 (0%)
Query: 88 DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
DL R + + + P ++ L + K K+ + L + M G S T +++
Sbjct: 74 DLFRDMIQ-SRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINC 132
Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
R +++ A+ M + ++ PD +N LL C + ++ ++ +M E
Sbjct: 133 FCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPT 192
Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
T + LV G C G+V +A VL+ RMV+ G TY V+ + + G A A++ +
Sbjct: 193 LITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLR 252
Query: 268 VCGGRDIKLD 277
R+IKLD
Sbjct: 253 KMEERNIKLD 262
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + LI K K+ EA +++ M + G + IT++ ++ + R+EEA +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM 390
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+++M PD+ +N L+ YC + + ++M + A+ TY+ LV G C+
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450
Query: 221 AGRVEEAFVLLRRMV 235
+G++E A L + MV
Sbjct: 451 SGKLEVAKKLFQEMV 465
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 118/278 (42%), Gaps = 2/278 (0%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
EP + ++ L+N E + L+++ T T N + N +SD
Sbjct: 155 EPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVV 214
Query: 92 TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
+ R+ + GF P + Y ++ +CK + A+ ++ M E L A+ + I+ L
Sbjct: 215 LIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
+ ++ A+ L M+ D+ YN L+ +C G + +L+ M + K+ +
Sbjct: 275 KDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVV 334
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
T+ L+ + G++ EA LL+ M+ G + TY ++ + +A++ V +
Sbjct: 335 TFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLM 394
Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
+ D F L + R ++ + +EM+ R
Sbjct: 395 ISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLR 432
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 1/181 (0%)
Query: 98 KGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
KGF Y+TLIG C + D+ +++ M + + +TF ++ + ++ E
Sbjct: 292 KGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLRE 351
Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
A L++ M + ++P+ YN L+ +C + L ++ M + D T++ L+
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411
Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
G C+A R+++ L R M G TY ++ + G A K R ++
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471
Query: 277 D 277
D
Sbjct: 472 D 472
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +Y L+ LC ++++AL + + + L + I+ + ++++AW L
Sbjct: 471 PDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDL 530
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ V D AYN +++ C K +L+ + +KM EE D TY+ L+
Sbjct: 531 FCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLG 590
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
A L+ M G ST V+ L
Sbjct: 591 DDDATTAAELIEEMKSSGFPADVSTVKMVINML 623
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 64/149 (42%)
Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
K D+A+ + M + + I F+ + S + + K+ E L + M+ ++ + +
Sbjct: 68 KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127
Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
++ +C L+ + K+ + D ++ L+ G C RV EA L+ RMV+
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187
Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
G T ++ L G + AV +
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLI 216
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 29/261 (11%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLSV 85
P + Y+ ++ + L+ +LN+ D C T T+ + + +L +
Sbjct: 191 PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 250
Query: 86 LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
+ ++ L +G P Y+T+I +CK +D A +V + G I+++ +
Sbjct: 251 MDEM------LSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNIL 304
Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
L L + EE LM M + P++ Y+ L+T C G + +LK M+E+ L
Sbjct: 305 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364
Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
DA +YD L+ CR GR++ A L M+ DG Y V+ L + G QA+
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL- 423
Query: 265 FVMVCGGRDIKLDTELFGSLG 285
E+FG LG
Sbjct: 424 --------------EIFGKLG 430
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 1/220 (0%)
Query: 91 RTLARLDK-GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
R + L+K G P AY+ LI CK+ +ID+A RV+D M F +T++ ++ L
Sbjct: 145 RVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLC 204
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
+++ A ++ + P + Y L+ A +G + ++ +M L D
Sbjct: 205 SRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMF 264
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
TY+ ++ G C+ G V+ AF ++R + G +Y ++ ALL G + + K +
Sbjct: 265 TYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 324
Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
+ + L + L + EA +LK M ++ L
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 2/170 (1%)
Query: 97 DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRME 155
D P Y+T++ LCK K D+AL + + E G ++ +++ + S L + G ++
Sbjct: 397 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 456
Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
++E+M + PD YN +++ C +G + +L M + TY+ ++
Sbjct: 457 ALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515
Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
LG C+A R+E+A +L MV +G +TY ++ + GY A+A++
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 98/204 (48%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +Y+ L+ L K +E +++ M + +T+ +++ L R ++EEA L
Sbjct: 296 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 355
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+++MKE ++PD +Y+ L+ A+C +G L L+ M + D Y+ ++ C+
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCK 415
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G+ ++A + ++ + G S S+Y + AL G +A+ ++ I D
Sbjct: 416 NGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEIT 475
Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
+ S+ S L +EA +L +M
Sbjct: 476 YNSMISCLCREGMVDEAFELLVDM 499
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 22/215 (10%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
P + YD L+ A E L+ L D C +N +VL+ LC+
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN---------TVLATLCKN 416
Query: 93 LARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
+ D+ P S+Y+T+ L AL ++ M G IT
Sbjct: 417 -GKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEIT 475
Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
++ ++S L R ++EA+ L+ M+ P + YN +L +C + VL+ M
Sbjct: 476 YNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMV 535
Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
+ TY L+ G AG EA L +V
Sbjct: 536 GNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 2/279 (0%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
P+ ++ L++A E V L + + T++ N S LS
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 93 LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
LA++ K G+ P +L+ C K+I +A+ +VD M E G+ TF ++ L
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
+ EA L++ M + PDL Y ++ C +G++ +LKKME+ K+ AD
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260
Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
Y+ ++ G C+ +++A L M + G TY+ ++ L G ++ A + +
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320
Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
R I + F +L + + EA + EM KR +
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 359
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
FP Y TLI CK K+++E + + M++ G + +T+ ++ + + + A
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 454
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ + M + V P++ YN LL C G L V + ++ + D TY+ ++ G C
Sbjct: 455 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMC 514
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+AG+VE+ + L + G S Y ++ R G +A
Sbjct: 515 KAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEA 557
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 8/239 (3%)
Query: 15 QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
++V + + G PD T Y +VN D++ LL K + +N
Sbjct: 206 EAVALVDQMVQRGCQPDLVT---YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 262
Query: 75 FITNTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG 132
I + + D +D KG P Y +LI LC + +A R++ M E
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322
Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
+ +TF ++ + ++ EA L + M + + PD+ Y+ L+ +C L
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382
Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD---GQSVLYSTYAH 248
+ + M + + TY L+ G C+A RVEE L R M G +V Y+T H
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIH 441
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 96/208 (46%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + TLI L K EA+ +VD M + G +T+ +++ L + ++ A L
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSL 245
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
++ M++ ++ D+ YN ++ C ++ + +M+ + + D TY +L+ C
Sbjct: 246 LKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 305
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
GR +A LL M++ + T++ ++ A ++ G +A K R I D
Sbjct: 306 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 365
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
+ SL + +R +EA + + M +D
Sbjct: 366 YSSLINGFCMHDRLDEAKHMFELMISKD 393
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 93/200 (46%)
Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
+ L RL + K+D+A+ + M + S + F+ +LS + + + E L E M+
Sbjct: 52 EILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQT 111
Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
+ +S DL Y+ + +C + L+ VL KM + D T +L+ G C + R+ +
Sbjct: 112 LGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISD 171
Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
A L+ +MV+ G T+ ++ L ++AV V R + D +G++ +
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231
Query: 287 KLIGLERFNEANFILKEMNK 306
L + A +LK+M K
Sbjct: 232 GLCKRGDIDLALSLLKKMEK 251
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 69/134 (51%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ L+ LCK K+ +A+ V + + T++ ++ + + ++E+ W L
Sbjct: 466 PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWEL 525
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ VSP++ AYN +++ +C KG+ +LKKM+E+ ++ TY+ L+ R
Sbjct: 526 FCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLR 585
Query: 221 AGRVEEAFVLLRRM 234
G E + L++ M
Sbjct: 586 DGDREASAELIKEM 599
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/284 (18%), Positives = 114/284 (40%), Gaps = 20/284 (7%)
Query: 31 DEPTSAYYDDLVNAAGHERDLETV----RYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
+ PT + +L + ER + R +L R D I ++++ +
Sbjct: 23 NPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSD-----------IIKVDDAVDLF 71
Query: 87 SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
D+ ++ + FP ++ L+ + K+ K + + + + M G T+ ++
Sbjct: 72 GDMVKS-----RPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126
Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
R ++ A ++ M ++ PD+ + LL YC ++ ++ +M E
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186
Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
D T+ L+ G + EA L+ +MV G TY V+ L + G A+ +
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLL 246
Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
I+ D ++ ++ L + ++A + EM+ + ++
Sbjct: 247 KKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIR 290
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ +I +CK K+++ + ++ G + I ++ ++S R EEA L
Sbjct: 501 PDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSL 560
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
++ MKE P+ YN L+ A G+ A++ ++K+M DA T LV
Sbjct: 561 LKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLH 619
Query: 221 AGRVEEAFV 229
GR++++F+
Sbjct: 620 DGRLDKSFL 628
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 72/163 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + LI K K+ EA ++ D M + T+ +++ R++EA +
Sbjct: 326 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 385
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
E+M P++ Y+ L+ +C + + ++M + L + TY L+ G +
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
A + A ++ ++MV G TY ++ L + G A+A+
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAM 488
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 58/132 (43%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y +LI C ++DEA + ++M + +T+ ++ + KR+EE L
Sbjct: 361 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL 420
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M + + + Y L+ + + V K+M + + TY+ L+ G C+
Sbjct: 421 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCK 480
Query: 221 AGRVEEAFVLLR 232
G++ +A V+
Sbjct: 481 NGKLAKAMVVFE 492
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 89/209 (42%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + TLI LC ++ EAL +VD M E G IT + +++ L + EA L
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 215
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
++ M E P+ Y +L C G +L+KMEE + DA Y ++ G C+
Sbjct: 216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G ++ AF L M G + TY ++G G + K + R I +
Sbjct: 276 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 335
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
F L + + EA + KEM R +
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGI 364
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 97/204 (47%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +TL+ LC K EA+ ++D M E G +A+T+ P+L+V+ + + A L
Sbjct: 191 PDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 250
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M+E + D Y+ ++ C G+L + +ME + + + TY+ L+ G C
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 310
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
AGR ++ LLR M+ + T++ ++ + ++ G +A + R I DT
Sbjct: 311 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 370
Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
+ SL ++AN ++ M
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLM 394
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 74/162 (45%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P ++ LI CK +ID+ L + M+ G +T++ ++ ++ A L
Sbjct: 401 PNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKEL 460
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M +V P++ Y LL C G + +K+E+ K+ D Y+ ++ G C
Sbjct: 461 FQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 520
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
A +V++A+ L + G TY ++G L + G ++A
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 562
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 118/282 (41%), Gaps = 18/282 (6%)
Query: 3 LLRKLPTKFLIPQSV---LVTRSFTKSGAFPDE-------------PTSAYYDDLVNAAG 46
LLR + + + P V ++ SF K G + P + Y L++
Sbjct: 320 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 379
Query: 47 HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGFPRKSA 105
E L+ +++ C TFN + N + + D ++ +G +
Sbjct: 380 KENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTV 439
Query: 106 -YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
Y+TLI C+L K++ A + M + +T+ +L L E+A + E +
Sbjct: 440 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
++ ++ D+ YN ++ C + + + + + +TY+ ++ G C+ G +
Sbjct: 500 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPL 559
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
EA +L R+M +DG + TY ++ A L G ++VK +
Sbjct: 560 SEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLI 601
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 71/153 (46%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
Y+ LIG C + D+ +++ M + + +TF ++ + ++ EA L + M
Sbjct: 300 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
++PD Y L+ +C + +L + ++ M + + RT++ L+ G C+A R+
Sbjct: 360 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 419
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
++ L R+M G TY ++ LG
Sbjct: 420 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 452
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%)
Query: 98 KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
+ P + L + K K+ D L + M G + T +++ R +++ A
Sbjct: 83 RPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLA 142
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
+ M + ++ P+ ++ L+ C +G ++ ++ +M E D T + LV G
Sbjct: 143 FSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNG 202
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
C +G+ EA +L+ +MV+ G TY V+ + + G A A++ + R+IKLD
Sbjct: 203 LCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLD 262
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 88/202 (43%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y +I LCK +D A + + M G + IT++ ++ R ++ L+ M
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+ +++P++ ++ L+ ++ +G L + K+M + D TY +L+ G C+ ++
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
+A ++ MV G T+ ++ + ++ R + DT + +L
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445
Query: 286 SKLIGLERFNEANFILKEMNKR 307
L + N A + +EM R
Sbjct: 446 QGFCELGKLNVAKELFQEMVSR 467
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y L+ LC + ++AL + + + + L ++ I+ + ++++AW L
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDL 530
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ V P + YN ++ C KG L+ + +KMEE+ D TY+ L+
Sbjct: 531 FCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLG 590
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
G ++ L+ + G SV ST V+ L
Sbjct: 591 DGDATKSVKLIEELKRCGFSVDASTIKMVIDML 623
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 88/214 (41%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + LI K K+ EA + M G IT+ ++ + +++A +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+++M P++ +N L+ YC + + +KM + AD TY+ L+ G C
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G++ A L + MV TY ++ L G +A++ ++LD +
Sbjct: 451 LGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 510
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
+ + + + ++A + + + +K G K
Sbjct: 511 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVK 544
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 3/215 (1%)
Query: 97 DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR-ME 155
D + S +D ++ +L ID+AL +V + GF ++++ +L R KR +
Sbjct: 128 DLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNIS 187
Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
A + + M E +VSP++ YN L+ +CF GN+ + KME + + TY+ L+
Sbjct: 188 FAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLI 247
Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-CGGRDI 274
G C+ ++++ F LLR M G +Y V+ L R G + V FV+ R
Sbjct: 248 DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKE-VSFVLTEMNRRGY 306
Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
LD + +L F++A + EM + L
Sbjct: 307 SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL 341
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 96/205 (46%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ LI C ID AL + D M G + +T++ ++ + +++++ + L
Sbjct: 203 PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKL 262
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M + P+L +YN ++ C +G + S VL +M D TY+ L+ G C+
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCK 322
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G +A V+ M+ G + TY ++ ++ + G +A++F+ R + +
Sbjct: 323 EGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERT 382
Query: 281 FGSLGSKLIGLERFNEANFILKEMN 305
+ +L NEA +L+EMN
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLREMN 407
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 85/165 (51%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + Y TL+ + ++EA RV+ M + GF S +T++ +++ +ME+A +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+E MKE +SPD+ +Y+ +L+ +C ++ V ++M E+ + D TY +L+ G C
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
R +EA L M+ G TY ++ A G +A++
Sbjct: 498 QRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 17/225 (7%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLS 84
EP Y+ ++N E ++ V ++L + R T+N + N +L
Sbjct: 272 EPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALV 331
Query: 85 VLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
+ +++ R G P Y +LI +CK ++ A+ +D M G + T+
Sbjct: 332 MHAEMLR------HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
++ ++ M EA+ ++ M + SP + YN L+ +C G + VL+ M+E+
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYST 245
L D +Y ++ G CR+ V+EA + R MV+ G ++ YS+
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSS 490
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
P Y+TLI CKL+KID+ +++ MA G + I+++ +++ L R RM+E
Sbjct: 237 LPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF 296
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
++ M S D YN L+ YC +GN + +M L TY +L+ C
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMC 356
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
+AG + A L +M G TY ++ + GY +A +
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 5/220 (2%)
Query: 85 VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
VL+++ R LD+ Y+TLI CK +AL + M G S IT+ +
Sbjct: 297 VLTEMNRRGYSLDE-----VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL 351
Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
+ + + M A ++ M+ + P+ Y L+ + KG + VL++M +
Sbjct: 352 IHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF 411
Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
TY+AL+ G C G++E+A +L M + G S +Y+ V+ R +A++
Sbjct: 412 SPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALR 471
Query: 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
+ IK DT + SL R EA + +EM
Sbjct: 472 VKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEM 511
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + Y LI C +++AL++ + M E G +T+ +++ L + R EA L
Sbjct: 518 PDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRL 577
Query: 161 M-EVMKEIRVSPDLTAYNY--------------LLTAYCFKGNLTATSGVLKKMEEEKLG 205
+ ++ E V D+T + L+ +C KG +T V + M +
Sbjct: 578 LLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHK 637
Query: 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
D Y+ ++ G CRAG + +A+ L + MV G
Sbjct: 638 PDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 80/204 (39%), Gaps = 25/204 (12%)
Query: 25 KSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84
+ G PDE T Y L+NA E DLE L N+ T++ + N N S
Sbjct: 513 RVGLPPDEFT---YTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569
Query: 85 VLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
+ R L +L ++ P Y TLI + E VV ++ GF + +
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVTYHTLIENCSNI----EFKSVVSLIK--GFCMKGM--- 620
Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
M EA + E M PD TAYN ++ +C G++ + K+M +
Sbjct: 621 -----------MTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKS 669
Query: 203 KLGADARTYDALVLGACRAGRVEE 226
T ALV + G+V E
Sbjct: 670 GFLLHTVTVIALVKALHKEGKVNE 693
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 93/206 (45%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P ++L+ C +I EA+ +VD M E G+ +TF ++ L + + EA L
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+E M PDL Y ++ C +G +L KME+ K+ AD Y+ ++ G C+
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCK 262
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
+++AF L +M G TY ++ L G ++ A + + ++I D
Sbjct: 263 YKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVF 322
Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
F +L + + EA + EM K
Sbjct: 323 FNALIDAFVKEGKLVEAEKLYDEMVK 348
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
FP AY+TLI CK K+++E + V M++ G + +T+ ++ + + + A
Sbjct: 353 FPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 412
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ + M V PD+ YN LL C GN+ V + M++ + D TY ++ C
Sbjct: 413 VFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALC 472
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+AG+VE+ + L + G TY +M R G +A
Sbjct: 473 KAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 515
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 21/217 (9%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y+T+I LCK K +D+A + + M G T++P++S L R +A L+ M
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK-LGADARTYDALVLGACRAGRV 224
E ++PDL +N L+ A+ +G L + +M + K D Y+ L+ G C+ RV
Sbjct: 313 EKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRV 372
Query: 225 EEAFVLLRRMVDD---GQSVLYSTYAHVMGALLRLGYY-------AQAVKFVMVCGGRDI 274
EE + R M G +V Y+T H G++ AQ V MV G +
Sbjct: 373 EEGMEVFREMSQRGLVGNTVTYTTLIH--------GFFQARDCDNAQMVFKQMVSDG--V 422
Query: 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
D + L L A + + M KRD+K+
Sbjct: 423 HPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKL 459
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 1/185 (0%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ LI LC + +A R++ M E + F+ ++ + ++ EA L
Sbjct: 283 PDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKL 342
Query: 161 M-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
E++K PD+ AYN L+ +C + V ++M + L + TY L+ G
Sbjct: 343 YDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFF 402
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
+A + A ++ ++MV DG TY ++ L G A+ RD+KLD
Sbjct: 403 QARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIV 462
Query: 280 LFGSL 284
+ ++
Sbjct: 463 TYTTM 467
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 97/231 (41%), Gaps = 5/231 (2%)
Query: 80 ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
++++ + D+ ++ + FP + L+ + K+ K D + + + M G +
Sbjct: 57 DDAIGLFGDMVKS-----RPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLY 111
Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
T+ ++ R ++ A ++ M ++ P + N LL +C ++ ++ +M
Sbjct: 112 TYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 171
Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
E D T+ LV G + + EA L+ RMV G TY V+ L + G
Sbjct: 172 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 231
Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
A+ + I+ D ++ ++ L + ++A + +M + +K
Sbjct: 232 DLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIK 282
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%)
Query: 97 DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
D P Y+ L+ LC ++ AL V + M + L +T+ ++ L + ++E+
Sbjct: 420 DGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVED 479
Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
W L + V P++ Y +++ +C KG + +M+E+ ++ TY+ L+
Sbjct: 480 GWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIR 539
Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
R G + L++ M G + ST+ V L
Sbjct: 540 ARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNML 576
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 1/201 (0%)
Query: 97 DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
D+ FP Y LI LC ++ EAL +V M E G + T+ ++ L + E+
Sbjct: 317 DECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEK 376
Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
A L+ M E + P++ YN L+ YC +G + V++ ME KL + RTY+ L+
Sbjct: 377 ARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIK 436
Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
G C++ V +A +L +M++ TY ++ R G + A + + + R +
Sbjct: 437 GYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495
Query: 277 DTELFGSLGSKLIGLERFNEA 297
D + S+ L +R EA
Sbjct: 496 DQWTYTSMIDSLCKSKRVEEA 516
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 5/186 (2%)
Query: 77 TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
+N ++ VL+ + L R K P Y++LI C+ D A R++ +M + G
Sbjct: 441 SNVHKAMGVLN---KMLER--KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495
Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
T+ ++ L + KR+EEA L + +++ V+P++ Y L+ YC G + +L
Sbjct: 496 DQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLML 555
Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
+KM + ++ T++AL+ G C G+++EA +L +MV G ST ++ LL+
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKD 615
Query: 257 GYYAQA 262
G + A
Sbjct: 616 GDFDHA 621
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 81/184 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y +LI C+ K +D A +V + M G + + + ++ L +R++EA L
Sbjct: 251 PDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDL 310
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
MK+ P + Y L+ + C + ++K+MEE + + TY L+ C
Sbjct: 311 FVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCS 370
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
+ E+A LL +M++ G TY ++ + G AV V + R + +T
Sbjct: 371 QCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRT 430
Query: 281 FGSL 284
+ L
Sbjct: 431 YNEL 434
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 6/227 (2%)
Query: 88 DLCRTLARLDKGFPRK-----SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH 142
DLCR + + D+ F K Y+TL+ L + +DE +V M E + T++
Sbjct: 164 DLCRKMNK-DERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYN 222
Query: 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202
+++ + +EEA + + E + PD Y L+ YC + +L + V +M +
Sbjct: 223 KMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLK 282
Query: 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+ Y L+ G C A R++EA L +M DD TY ++ +L ++A
Sbjct: 283 GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEA 342
Query: 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
+ V IK + + L L +F +A +L +M ++ L
Sbjct: 343 LNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGL 389
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 69/162 (42%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
P ++ LI LC K+ EA + + M + G + T ++ L + + A+
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ M PD Y + YC +G L ++ KM E + D TY +L+ G
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYG 683
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261
G+ AF +L+RM D G T+ ++ LL + Y Q
Sbjct: 684 DLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQ 725
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 7/212 (3%)
Query: 97 DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
D+G P + Y ++I LCK K+++EA + D + + G + + + ++ + +++
Sbjct: 490 DRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVD 549
Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
EA ++E M P+ +N L+ C G L + + +KM + L T L+
Sbjct: 550 EAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILI 609
Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
+ G + A+ ++M+ G TY + R G A M+ R+
Sbjct: 610 HRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED--MMAKMRENG 667
Query: 276 LDTELFGSLGSKLIGLERFNEANF---ILKEM 304
+ +LF + S + G + NF +LK M
Sbjct: 668 VSPDLF-TYSSLIKGYGDLGQTNFAFDVLKRM 698
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 112/308 (36%), Gaps = 66/308 (21%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---TENSLSVLSDL 89
P Y L++ ++ +L K C + TFN + + + L + L
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLL 589
Query: 90 CRTLARLDKGFPRKSAYDT-LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
+ ++ G + DT LI RL K D A M G A T+ +
Sbjct: 590 EEKMVKI--GLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647
Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY------------------------- 183
R R+ +A +M M+E VSPDL Y+ L+ Y
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ 707
Query: 184 -------------------------CFKGNLTATSGV---LKKMEEEKLGADARTYDALV 215
C N+ V L+KM E + +A++Y+ L+
Sbjct: 708 HTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767
Query: 216 LGACRAGRV---EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCG 270
LG C G + E+ F ++R ++G S + ++ +L + +A K V M+C
Sbjct: 768 LGICEVGNLRVAEKVFDHMQR--NEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICV 825
Query: 271 GRDIKLDT 278
G +L++
Sbjct: 826 GHLPQLES 833
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 1/148 (0%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWG 159
P +Y+ LI +C++ + A +V D M G S + F+ +LS + K+ EA
Sbjct: 758 PNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAK 817
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+++ M + P L + L+ KG + V + + + D + ++ G
Sbjct: 818 VVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVG 877
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
+ G VE + L M +G TY+
Sbjct: 878 KQGLVEAFYELFNVMEKNGCKFSSQTYS 905
>sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400
OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1
Length = 610
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 10/185 (5%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
+D L+ KL ++E RV + + GF +S +T + +L+ L + ME+ W + VM
Sbjct: 168 VFDMLVKGYLKLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYSVM 227
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
+ + P+ +N L +C N L+KMEEE D TY+ LV CR GR+
Sbjct: 228 CRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRL 287
Query: 225 EEAFVLL-----RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
+EAF L RR+V D TY ++ L + G +A + R IK D
Sbjct: 288 KEAFYLYKIMYRRRVVPD-----LVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCM 342
Query: 280 LFGSL 284
+ +L
Sbjct: 343 SYNTL 347
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%)
Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
+++ +V +M G + TF+ + +V E +E M+E PDL YN
Sbjct: 217 MEDCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNT 276
Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
L+++YC +G L + K M ++ D TY +L+ G C+ GRV EA RMVD G
Sbjct: 277 LVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRG 336
Query: 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
+Y ++ A + G Q+ K + G + D
Sbjct: 337 IKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPD 375
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 3/197 (1%)
Query: 91 RTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
+T R+ D+G P +Y+TLI CK + ++ +++ M T I+
Sbjct: 327 QTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGF 386
Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGAD 207
R R+ A + ++ ++V ++L+ + C +G A +L ++ EEE A
Sbjct: 387 VREGRLLSAVNFVVELRRLKVDIPFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAK 446
Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
TY+ L+ R +EEA VL ++ + Q + TY ++G L R+G +A +
Sbjct: 447 PETYNNLIESLSRCDAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLMA 506
Query: 268 VCGGRDIKLDTELFGSL 284
++K D+ + G+L
Sbjct: 507 EMFDSEVKPDSFICGAL 523
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%)
Query: 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLM 161
+ Y+ LI L + I+EAL + + L A T+ ++ L R R EA LM
Sbjct: 446 KPETYNNLIESLSRCDAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLM 505
Query: 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221
M + V PD L+ YC + + +L E D +Y++LV C
Sbjct: 506 AEMFDSEVKPDSFICGALVYGYCKELDFDKAERLLSLFAMEFRIFDPESYNSLVKAVCET 565
Query: 222 G 222
G
Sbjct: 566 G 566
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Query: 93 LARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVD-IMAEGGFGLSAITFHPILSVLTRG 151
L RL P + D LI LC+ K A ++D I+ E G T++ ++ L+R
Sbjct: 402 LRRLKVDIPFEVC-DFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRC 460
Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
+EEA L +K D Y L+ C G ++ +M + ++ D+
Sbjct: 461 DAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFIC 520
Query: 212 DALVLGACRAGRVEEAFVLL 231
ALV G C+ ++A LL
Sbjct: 521 GALVYGYCKELDFDKAERLL 540
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 99/200 (49%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
+Y+ +I LC+ + AL VV M + G+ +T +++ +G R+ +A L+ M
Sbjct: 106 SYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM 165
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
+E+ PD+ YN ++ C G + + +ME + + ADA TY++LV G C +GR
Sbjct: 166 EEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRW 225
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
+A L+R MV T+ V+ ++ G +++A+K R + D + SL
Sbjct: 226 SDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL 285
Query: 285 GSKLIGLERFNEANFILKEM 304
+ L R +EA +L M
Sbjct: 286 INGLCMHGRVDEAKQMLDLM 305
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 3/209 (1%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y++LI LC ++DEA +++D+M G +T++ +++ + KR++E L
Sbjct: 277 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 336
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M + + D YN ++ Y G A + +M+ + RTY L+ G C
Sbjct: 337 FREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCM 393
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
RVE+A VL M + +TY V+ + ++G A + +K D
Sbjct: 394 NWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVS 453
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
+ ++ S ++++++ + ++M + L
Sbjct: 454 YTTMISGFCRKRQWDKSDLLYRKMQEDGL 482
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 92/210 (43%)
Query: 98 KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
+ P + ++ ++ K K D + + M G G +++ +++ L R R A
Sbjct: 64 RPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIA 123
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
++ M + PD+ + L+ +C + ++ KMEE D Y+ ++ G
Sbjct: 124 LSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDG 183
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
+C+ G V +A L RM DG TY ++ L G ++ A + + RDI +
Sbjct: 184 SCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPN 243
Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
F ++ + +F+EA + +EM +R
Sbjct: 244 VITFTAVIDVFVKEGKFSEAMKLYEEMTRR 273
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 1/210 (0%)
Query: 99 GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
GF P Y+T+I CK+ +++A+ + D M G A+T++ +++ L R +A
Sbjct: 169 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
LM M + P++ + ++ + +G + + ++M + D TY++L+ G
Sbjct: 229 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 288
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
C GRV+EA +L MV G TY ++ + + K R + D
Sbjct: 289 LCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 348
Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKR 307
T + ++ R + A I M+ R
Sbjct: 349 TITYNTIIQGYFQAGRPDAAQEIFSRMDSR 378
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 32/171 (18%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL-------------- 145
P Y+TLI CK K++DE ++ MA+ G IT++ I+
Sbjct: 311 LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQE 370
Query: 146 --------------SVLTRG----KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
S+L G R+E+A L E M++ + D+T YN ++ C G
Sbjct: 371 IFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIG 430
Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
N+ + + + + L D +Y ++ G CR + +++ +L R+M +DG
Sbjct: 431 NVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 481
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%)
Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
S + F +LS + + K + L M+ + DL +YN ++ C V+
Sbjct: 68 SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVV 127
Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
KM + D T +L+ G C+ RV +A L+ +M + G Y ++ ++
Sbjct: 128 GKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKI 187
Query: 257 GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
G AV+ ++ D + SL + L R+++A ++++M RD+
Sbjct: 188 GLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI 240
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 4/178 (2%)
Query: 27 GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
G PD T Y+ L+N + ++ L + A+ T+N I
Sbjct: 309 GCLPDVVT---YNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRP 365
Query: 87 SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
+R+D P Y L+ LC ++++AL + + M + L T++ ++
Sbjct: 366 DAAQEIFSRMDSR-PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIH 424
Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
+ + +E+AW L + + PD+ +Y +++ +C K + + +KM+E+ L
Sbjct: 425 GMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 482
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 5/260 (1%)
Query: 27 GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
G PD T Y+ ++ A + ++ +LN ++ T+N I + S
Sbjct: 226 GILPDVVT---YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 282
Query: 87 SDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
+ L ++ D P Y L+ LCK + EA ++ D M + G T+ +
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTL 342
Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
L + E GL+++M + PD ++ L+ AY +G + V KM ++ L
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 402
Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
+A TY A++ C++GRVE+A + +M+D+G S Y ++ L + +A +
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 462
Query: 265 FVMVCGGRDIKLDTELFGSL 284
++ R I L+T F S+
Sbjct: 463 LILEMLDRGICLNTIFFNSI 482
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 1/161 (0%)
Query: 96 LDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
+D+G P Y++LI LC K + A ++ M + G L+ I F+ I+ + R+
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492
Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
E+ L E+M I V P++ YN L+ YC G + +L M L + TY L
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552
Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
+ G C+ R+E+A VL + M G S TY ++ L +
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 1/169 (0%)
Query: 96 LDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
LD+G P Y+++I LCK + +D+A+ V++ M + G +T++ IL +
Sbjct: 223 LDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 282
Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
+EA G ++ M+ V PD+ Y+ L+ C G + M + L + TY L
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTL 342
Query: 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
+ G G + E LL MV +G + ++ ++ A + G QA+
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAM 391
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 3/188 (1%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEE 156
P +Y+ L+ LC + EAL ++ +MA+ GG +++ +++ + ++
Sbjct: 155 IPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDK 214
Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
A+ M + + PD+ YN ++ A C + VL M + + D TY++++
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 274
Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
G C +G+ +EA L++M DG TY+ +M L + G +A K R +K
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP 334
Query: 277 DTELFGSL 284
+ +G+L
Sbjct: 335 EITTYGTL 342
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +Y T+I K D+A M + G +T++ I++ L + + M++A +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M + V PD YN +L YC G G LKKM + + D TY L+ C+
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
GR EA + M G +TY ++
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLL 343
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 1/206 (0%)
Query: 93 LARLDKGFPRKSAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
L LD+G + + +++I CK ++ E+ ++ ++M G + IT++ +++
Sbjct: 465 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLA 524
Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
+M+EA L+ M + + P+ Y+ L+ YC + + K+ME + D TY
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584
Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
+ ++ G + R A L R+ + G + STY ++ L + A++
Sbjct: 585 NIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCL 644
Query: 272 RDIKLDTELFGSLGSKLIGLERFNEA 297
D+KL+ F + L+ + R +EA
Sbjct: 645 MDLKLEARTFNIMIDALLKVGRNDEA 670
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 90/204 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + LI K K+D+A+ V M + G +A+T+ ++ +L + R+E+A
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
E M + +SP YN L+ C ++ +M + + + +++++ C+
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 488
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
GRV E+ L MV G TY ++ G +A+K + +K +T
Sbjct: 489 EGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548
Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
+ +L + + R +A + KEM
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEM 572
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 97/256 (37%), Gaps = 39/256 (15%)
Query: 94 ARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
A D+ P Y LIG C+ ++D + + + GF + AI F P+L L KR
Sbjct: 78 AGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKR 137
Query: 154 MEEAWGL-MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA------ 206
+A + + M E+ P++ +YN LL C + +L M +++ G
Sbjct: 138 TSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVV 197
Query: 207 --------------------------------DARTYDALVLGACRAGRVEEAFVLLRRM 234
D TY++++ C+A +++A +L M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257
Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
V +G TY ++ G +A+ F+ ++ D + L L R
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC 317
Query: 295 NEANFILKEMNKRDLK 310
EA I M KR LK
Sbjct: 318 MEARKIFDSMTKRGLK 333
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 1/163 (0%)
Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
S Y+ ++ LCK K D+AL++ + L A TF+ ++ L + R +EA L
Sbjct: 617 STYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVA 676
Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
+ P+ Y + +G L + ME+ D+ + +V + G
Sbjct: 677 FSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGE 736
Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
+ A L M+D+ L ++ A + LL G Y + +F+
Sbjct: 737 ITRAGTYL-SMIDEKHFSLEASTASLFIDLLSGGKYQEYYRFL 778
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 10/203 (4%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKRMEEAW 158
P Y+ L+ LCK K + VD M + F + ++F ++ + K + EA
Sbjct: 192 PDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDD-FDVKPDLVSFTILIDNVCNSKNLREAM 250
Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
L+ + PD YN ++ +C + GV KKM+EE + D TY+ L+ G
Sbjct: 251 YLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGL 310
Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV-----CGGRD 273
+AGRVEEA + L+ MVD G +TY +M + R G A+ + C D
Sbjct: 311 SKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPND 370
Query: 274 IKLDTELFGSLGSKLI--GLERF 294
+T L G ++L+ G+E +
Sbjct: 371 CTYNTLLHGLCKARLMDKGMELY 393
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 89/195 (45%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y+T++ C L K EA+ V M E G IT++ ++ L++ R+EEA ++ M
Sbjct: 268 YNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMV 327
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+ PD Y L+ C KG +L++ME + TY+ L+ G C+A ++
Sbjct: 328 DAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMD 387
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
+ L M G + + YA ++ +L++ G A+A + D + +L
Sbjct: 388 KGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYSTLE 447
Query: 286 SKLIGLERFNEANFI 300
+ L L++ E +
Sbjct: 448 TTLKWLKKAKEQGLV 462
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 7/238 (2%)
Query: 74 NFITNTENSLSVLSDLCRTLARLDKGFPR----KSAYDTLIGRLCKLK--KIDEALRVVD 127
N + + S++V++D + + K P +S + L+ C+ I RV++
Sbjct: 89 NSVLQSYGSIAVVNDTVKLFQHILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLN 148
Query: 128 IMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
+M G +T + L R++EA LM+ + E PD YN+LL C
Sbjct: 149 LMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCK 208
Query: 188 NLTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246
+L + +M ++ + D ++ L+ C + + EA L+ ++ + G Y
Sbjct: 209 DLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLY 268
Query: 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
+M L ++AV ++ D + +L L R EA LK M
Sbjct: 269 NTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTM 326
Score = 38.5 bits (88), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 45 AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS 104
AG+E D T L+N R SL LS L AR P
Sbjct: 329 AGYEPDTATYTSLMNGMCR---------------KGESLGALSLLEEMEAR--GCAPNDC 371
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
Y+TL+ LCK + +D+ + + ++M G L + + ++ L + ++ EA+ + +
Sbjct: 372 TYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYA 431
Query: 165 KEIRVSPDLTAYNYLLT 181
+ + D +AY+ L T
Sbjct: 432 VDSKSLSDASAYSTLET 448
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%)
Query: 98 KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
+GF +Y TLI C+ +A R+ + M + G ++ +T+ ++ R A
Sbjct: 320 RGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVA 379
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
L++ M E+ +SPD Y +L C GN+ GV M E ++ DA +Y++L+ G
Sbjct: 380 KKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISG 439
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
CR+GRV EA L M T+ ++G L+R
Sbjct: 440 LCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIR 477
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 123/281 (43%), Gaps = 24/281 (8%)
Query: 46 GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSA 105
G E DL T LLN + N + E V++++ R+ +LD +
Sbjct: 250 GCEPDLVTYNVLLNYYYDN---------NMLKRAEG---VMAEMVRSGIQLDA-----YS 292
Query: 106 YDTLIGRLCKLKKIDEALR-VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
Y+ L+ R C++ D+ +V M GF +++ ++ R +A+ L E M
Sbjct: 293 YNQLLKRHCRVSHPDKCYNFMVKEMEPRGF-CDVVSYSTLIETFCRASNTRKAYRLFEEM 351
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
++ + ++ Y L+ A+ +GN + +L +M E L D Y ++ C++G V
Sbjct: 352 RQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNV 411
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
++A+ + M++ + +Y ++ L R G +A+K G++ D F +
Sbjct: 412 DKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFI 471
Query: 285 GSKLIGLERFNEANFILKEMNKRDLKMGFKL-RDYYEINVK 324
LI ++ + A + +M + GF L RD + +K
Sbjct: 472 IGGLIRGKKLSAAYKVWDQM----MDKGFTLDRDVSDTLIK 508
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
P A L+ LC +K+D A +V + + LS + ++ ++S + R+E+A
Sbjct: 182 PDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEA 241
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
L M +I PDL YN LL Y L GV+ +M + DA +Y+ L+ C
Sbjct: 242 LKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHC 301
Query: 220 RAGRVEEAF 228
R ++ +
Sbjct: 302 RVSHPDKCY 310
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y+ LI CK +I++A + M++ G +T++ +L+ ++ A G+M M
Sbjct: 223 YNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMV 282
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+ D +YN LL +C + + K E + D +Y L+ CRA
Sbjct: 283 RSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTR 342
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
+A+ L M G + TY ++ A LR G + A K +
Sbjct: 343 KAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLL 383
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + Y T++ LCK +D+A V + M E AI+++ ++S L R R+ EA L
Sbjct: 393 PDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKL 452
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
E MK PD + +++ L+A V +M ++ D D L+ +C
Sbjct: 453 FEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKASC 511
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 58/135 (42%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y+ IG L + + + A + M GF L T+ +S L + K+ + L+ M+
Sbjct: 47 YNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDME 106
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+ PD+ A+N L C + + M + D +Y L+ G RAG+V
Sbjct: 107 TLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVT 166
Query: 226 EAFVLLRRMVDDGQS 240
+A + M+ G S
Sbjct: 167 DAVEIWNAMIRSGVS 181
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y I LCK+KK D ++ M GF F+ L +L R ++ A M
Sbjct: 82 YSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMV 141
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+ PD+ +Y L+ G +T + M + D + ALV+G C A +V+
Sbjct: 142 QRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVD 201
Query: 226 EAFVLL 231
A+ ++
Sbjct: 202 LAYEMV 207
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/168 (19%), Positives = 70/168 (41%), Gaps = 1/168 (0%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +Y LI L + K+ +A+ + + M G ++ L ++++ A+ +
Sbjct: 147 PDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEM 206
Query: 161 M-EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ E +K RV YN L++ +C G + + M + D TY+ L+
Sbjct: 207 VAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYY 266
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
++ A ++ MV G + +Y ++ R+ + + F++
Sbjct: 267 DNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMV 314
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 120/296 (40%), Gaps = 53/296 (17%)
Query: 2 SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
+L++ L + +I ++ + ++ G P+ T ++ LVN + L+
Sbjct: 396 TLIKGLSNQGMILEAAQLANEMSEKGLIPEVQT---FNILVNGLCKMGCVSDADGLVKVM 452
Query: 62 ARDCCFNTANTFNFITN-------TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRL 113
F TFN + + EN+L +L LD G P Y++L+ L
Sbjct: 453 ISKGYFPDIFTFNILIHGYSTQLKMENALEILD------VMLDNGVDPDVYTYNSLLNGL 506
Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
CK K ++ + M E G + TF+ +L L R ++++EA GL+E MK V+PD
Sbjct: 507 CKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDA 566
Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEE-------------------EK----------- 203
+ L+ +C G+L + +KMEE EK
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQ 626
Query: 204 ------LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
LG D TY +V G C+ G V + L M+++G +T V+ L
Sbjct: 627 EMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCL 682
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 6/207 (2%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD--- 88
+P Y+ L+ ++ + L N+ + TFN + N + +SD
Sbjct: 388 KPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADG 447
Query: 89 LCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
L + + + KG FP ++ LI K++ AL ++D+M + G T++ +L+
Sbjct: 448 LVKVM--ISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505
Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
L + + E+ + M E +P+L +N LL + C L G+L++M+ + + D
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565
Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRM 234
A T+ L+ G C+ G ++ A+ L R+M
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKM 592
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 20/264 (7%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC- 90
EP S Y+ L+ AG+ + + L + D FN F+ + S++ LC
Sbjct: 318 EPDSYTYNTLI--AGYCKG--GMVQLAERIVGDAVFN-----GFVPDQFTYRSLIDGLCH 368
Query: 91 -----RTLA----RLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
R LA L KG P Y+TLI L I EA ++ + M+E G T
Sbjct: 369 EGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQT 428
Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
F+ +++ L + + +A GL++VM PD+ +N L+ Y + + +L M
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVML 488
Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
+ + D TY++L+ G C+ + E+ + MV+ G + T+ ++ +L R
Sbjct: 489 DNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLD 548
Query: 261 QAVKFVMVCGGRDIKLDTELFGSL 284
+A+ + + + D FG+L
Sbjct: 549 EALGLLEEMKNKSVNPDAVTFGTL 572
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 91/206 (44%)
Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
S ++ L+ LCK + E +++D + + G + T++ + L + ++ A ++
Sbjct: 217 STFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGC 276
Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
+ E PD+ YN L+ C L KM E L D+ TY+ L+ G C+ G
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGM 336
Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283
V+ A ++ V +G TY ++ L G +A+ G+ IK + L+ +
Sbjct: 337 VQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNT 396
Query: 284 LGSKLIGLERFNEANFILKEMNKRDL 309
L L EA + EM+++ L
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGL 422
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
AY T++G + E + M G L TF+ +L VL + ++E L++ +
Sbjct: 183 AYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKV 242
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
+ V P+L YN + C +G L ++ + E+ D TY+ L+ G C+ +
Sbjct: 243 IKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKF 302
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
+EA V L +MV++G TY ++ + G A + V
Sbjct: 303 QEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIV 344
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 3/149 (2%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
P Y+ I LC+ ++D A+R+V + E G IT++ ++ L + + +EA
Sbjct: 248 LPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEV 307
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ M + PD YN L+ YC G + ++ D TY +L+ G C
Sbjct: 308 YLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLC 367
Query: 220 RAGRVEEAFVLLRRMVDDG---QSVLYST 245
G A L + G +LY+T
Sbjct: 368 HEGETNRALALFNEALGKGIKPNVILYNT 396
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 1/167 (0%)
Query: 97 DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
D+G P ++ + CK + ALR+++ M+ G ++ + + ++
Sbjct: 139 DRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKA 198
Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
E + L M VS L+ +N LL C KG++ +L K+ + + + TY+ +
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFI 258
Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
G C+ G ++ A ++ +++ G TY +++ L + + +A
Sbjct: 259 QGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA 305
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 41/258 (15%)
Query: 19 VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
+ + G FPD T ++ L++ + +E +L+ + T+N + N
Sbjct: 448 LVKVMISKGYFPDIFT---FNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLN 504
Query: 79 TENSLSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
S D+ T + +KG P ++ L+ LC+ +K+DEAL +++ M
Sbjct: 505 GLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNP 564
Query: 137 SAITFHPILSVLTRG----------KRMEEAWG--------------------------L 160
A+TF ++ + ++MEEA+ L
Sbjct: 565 DAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKL 624
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M + + PD Y ++ +C GN+ L +M E T ++ C
Sbjct: 625 FQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCV 684
Query: 221 AGRVEEAFVLLRRMVDDG 238
RV EA ++ RMV G
Sbjct: 685 EDRVYEAAGIIHRMVQKG 702
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 62/140 (44%)
Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
K+ EA+ V + M + +++ I+SVL ++A + M++ ++PD+ ++
Sbjct: 91 KVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150
Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
+ ++C A +L M + + Y +V G E + L +M+
Sbjct: 151 IRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLAS 210
Query: 238 GQSVLYSTYAHVMGALLRLG 257
G S+ ST+ ++ L + G
Sbjct: 211 GVSLCLSTFNKLLRVLCKKG 230
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 74/190 (38%), Gaps = 8/190 (4%)
Query: 95 RLDKGFPRK-SAYDTLIGRLC---KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
R + GF S Y ++I +L K + ++E L VD+ G + + + R
Sbjct: 31 RKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVL--VDMRENVGNHMLEGVYVGAMKNYGR 88
Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
+++EA + E M P + +YN +++ G V +M + + D +
Sbjct: 89 KGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYS 148
Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV--MV 268
+ + C+ R A LL M G + Y V+G + A+ + M+
Sbjct: 149 FTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKML 208
Query: 269 CGGRDIKLDT 278
G + L T
Sbjct: 209 ASGVSLCLST 218
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 8/214 (3%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y +L+G C KI++ALR+ M G S TF +LS L R + +A L
Sbjct: 470 PTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKL 529
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M E V P+ YN ++ YC +G+++ LK+M E+ + D +Y L+ G C
Sbjct: 530 FNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCL 589
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G+ EA V + + + Y ++ R G +A+ R + LD
Sbjct: 590 TGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVC 649
Query: 281 FGSL--GSKLIGLERFNEANF--ILKEMNKRDLK 310
+G L GS L+ + F +LKEM+ R LK
Sbjct: 650 YGVLIDGS----LKHKDRKLFFGLLKEMHDRGLK 679
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ LI LCK +K EA + D M + G + +T+ ++ + R +++ A
Sbjct: 365 PNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSF 424
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M + + + YN L+ +C G+++A G + +M +KL TY +L+ G C
Sbjct: 425 LGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCS 484
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
G++ +A L M G + T+ ++ L R G AVK
Sbjct: 485 KGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKL 529
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P ++A +L+ L K KI+EAL +V + + G + ++ ++ L +G++ EA L
Sbjct: 330 PSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELL 389
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M +I + P+ Y+ L+ +C +G L L +M + L Y++L+ G C+
Sbjct: 390 FDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCK 449
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G + A + M++ TY +MG G +A++ G+ I
Sbjct: 450 FGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYT 509
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
F +L S L +A + EM + ++K
Sbjct: 510 FTTLLSGLFRAGLIRDAVKLFNEMAEWNVK 539
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 28/204 (13%)
Query: 97 DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
D+G P Y ++I K EA + D+M G + +T+ +++ L + +
Sbjct: 675 DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734
Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE------EKLGADAR 209
EA L M+ + P+ Y CF LT ++K E + L A+
Sbjct: 735 EAEVLCSKMQPVSSVPNQVTYG------CFLDILTKGEVDMQKAVELHNAILKGLLANTA 788
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
TY+ L+ G CR GR+EEA L+ RM+ DG S TY ++ L C
Sbjct: 789 TYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINEL---------------C 833
Query: 270 GGRDIKLDTELFGSLGSKLIGLER 293
D+K EL+ S+ K I +R
Sbjct: 834 RRNDVKKAIELWNSMTEKGIRPDR 857
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 1/167 (0%)
Query: 97 DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
+KG P +Y LI LC + EA VD + +G L+ I + +L R ++E
Sbjct: 570 EKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLE 629
Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
EA + + M + V DL Y L+ + G+LK+M + L D Y +++
Sbjct: 630 EALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMI 689
Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+ G +EAF + M+++G TY V+ L + G+ +A
Sbjct: 690 DAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEA 736
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y TL+ LCK+++ + L ++D M F S ++ L + ++EEA L
Sbjct: 295 PDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNL 354
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
++ + + VSP+L YN L+ + C + +M + L + TY L+ CR
Sbjct: 355 VKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCR 414
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
G+++ A L MVD G + Y ++ + G + A F+
Sbjct: 415 RGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFM 460
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 88/211 (41%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y LI C+ K+D AL + M + G LS ++ +++ + + A G
Sbjct: 400 PNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGF 459
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M M ++ P + Y L+ YC KG + + +M + + T+ L+ G R
Sbjct: 460 MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFR 519
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
AG + +A L M + TY ++ G ++A +F+ + I DT
Sbjct: 520 AGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYS 579
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
+ L L + +EA + ++K + ++
Sbjct: 580 YRPLIHGLCLTGQASEAKVFVDGLHKGNCEL 610
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
Y L+ C+ K++EAL V M + G L + + ++ + K + +GL++ M
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEM 673
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
+ + PD Y ++ A G+ G+ M E + TY A++ G C+AG V
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFV 733
Query: 225 EEAFVLLRRM 234
EA VL +M
Sbjct: 734 NEAEVLCSKM 743
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 89/205 (43%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y+ LI LCK +K+ EA+ + +A +T+ ++ L + + E +M+ M
Sbjct: 265 YNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEML 324
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+R SP A + L+ +G + ++K++ + + + Y+AL+ C+ +
Sbjct: 325 CLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFH 384
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
EA +L RM G TY+ ++ R G A+ F+ +KL + SL
Sbjct: 385 EAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLI 444
Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
+ + A + EM + L+
Sbjct: 445 NGHCKFGDISAAEGFMAEMINKKLE 469
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 6/211 (2%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD--- 88
+P Y +++A D + + + + C T+ + N +++
Sbjct: 679 KPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEV 738
Query: 89 LCRTLARLDKGFPRKSAYDTLIGRLCKLK-KIDEALRVVDIMAEGGFGLSAITFHPILSV 147
LC + + P + Y + L K + + +A+ + + + +G +A T++ ++
Sbjct: 739 LCSKMQPVSS-VPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTA-TYNMLIRG 796
Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
R R+EEA L+ M VSPD Y ++ C + ++ + M E+ + D
Sbjct: 797 FCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPD 856
Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
Y+ L+ G C AG + +A L M+ G
Sbjct: 857 RVAYNTLIHGCCVAGEMGKATELRNEMLRQG 887
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%)
Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
+ Y+ LI C+ +I+EA ++ M G IT+ +++ L R +++A L
Sbjct: 788 ATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNS 847
Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
M E + PD AYN L+ C G + + + +M + L + +T
Sbjct: 848 MTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 67/162 (41%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + Y+ +I C+ + +A + M E G ++ P++ L + EA
Sbjct: 540 PNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVF 599
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
++ + + + Y LL +C +G L V ++M + + D Y L+ G+ +
Sbjct: 600 VDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLK 659
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+ F LL+ M D G Y ++ A + G + +A
Sbjct: 660 HKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEA 701
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 80/211 (37%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
P L+ L K + A+ + + M G + ++ L K + A
Sbjct: 189 LPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKE 248
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
++ M+ ++ YN L+ C K + G+ K + + L D TY LV G C
Sbjct: 249 MIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLC 308
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
+ E ++ M+ S + + ++ L + G +A+ V + +
Sbjct: 309 KVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLF 368
Query: 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
++ +L L +F+EA + M K L+
Sbjct: 369 VYNALIDSLCKGRKFHEAELLFDRMGKIGLR 399
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 135/303 (44%), Gaps = 15/303 (4%)
Query: 2 SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKR 61
++LR L + Q++ V + +PD T Y L+ A + + LL++
Sbjct: 209 TILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT---YTILIEATCRDSGVGHAMKLLDEM 265
Query: 62 ARDCCFNTANTFNFITNT-------ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLC 114
C T+N + N + ++ L+D+ + + P ++ ++ +C
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQ-----PNVITHNIILRSMC 320
Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
+ +A +++ M GF S +TF+ +++ L R + A ++E M + P+
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
+YN LL +C + + L++M D TY+ ++ C+ G+VE+A +L ++
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440
Query: 235 VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294
G S + TY V+ L + G +A+K + +D+K DT + SL L +
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500
Query: 295 NEA 297
+EA
Sbjct: 501 DEA 503
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167
TLI C+L K +A ++++I+ G IT++ ++S + + A + V+ +
Sbjct: 142 TLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNA---LSVLDRM 198
Query: 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
VSPD+ YN +L + C G L VL +M + D TY L+ CR V A
Sbjct: 199 SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHA 258
Query: 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
LL M D G + TY ++ + + G +A+KF+
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ +I CK +I+ AL V+D M+ +T++ IL L ++++A +
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEV 226
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
++ M + PD+ Y L+ A C + +L +M + D TY+ LV G C+
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
GR++EA L M G T+ ++ ++ G + A K +
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 8/186 (4%)
Query: 81 NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
N+LSVL + + P Y+T++ LC K+ +A+ V+D M + IT
Sbjct: 190 NALSVLDRMSVS--------PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241
Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
+ ++ R + A L++ M++ +PD+ YN L+ C +G L L M
Sbjct: 242 YTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 301
Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
+ T++ ++ C GR +A LL M+ G S T+ ++ L R G
Sbjct: 302 SSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLG 361
Query: 261 QAVKFV 266
+A+ +
Sbjct: 362 RAIDIL 367
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 84/167 (50%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
+P Y+T++ LCK K+++A+ +++ ++ G IT++ ++ L + + +A
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
L++ M+ + PD Y+ L+ +G + + E + +A T+++++LG C
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC 530
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
++ + + A L M++ G ++Y ++ L G +A++ +
Sbjct: 531 KSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELL 577
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 84/193 (43%), Gaps = 3/193 (1%)
Query: 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171
++ + +++E + ++ M G I ++ R + +A ++E+++ P
Sbjct: 111 QMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVP 170
Query: 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231
D+ YN +++ YC G + VL +M + D TY+ ++ C +G++++A +L
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVL 227
Query: 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291
RM+ TY ++ A R A+K + R D + L + +
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287
Query: 292 ERFNEANFILKEM 304
R +EA L +M
Sbjct: 288 GRLDEAIKFLNDM 300
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
F L + + L + R +EE + +E M PD+ L+ +C G +
Sbjct: 98 FALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAA 157
Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
+L+ +E D TY+ ++ G C+AG + A +L RM V Y+T ++ +L
Sbjct: 158 KILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNT---ILRSL 214
Query: 254 LRLGYYAQAVKFV 266
G QA++ +
Sbjct: 215 CDSGKLKQAMEVL 227
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 123/279 (44%), Gaps = 2/279 (0%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
P+ ++ L++A + + V L K R + T+N + N S +S
Sbjct: 83 PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 93 LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
L ++ K G+ P +L+ C K+I +A+ +VD M E G+ ITF ++ L
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
+ EA L++ M + P+L Y ++ C +G+ +L KME K+ AD
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262
Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
++ ++ C+ V++A L + M G TY+ ++ L G ++ A + +
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322
Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
+ I + F +L + +F EA + +M KR +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 113/284 (39%), Gaps = 6/284 (2%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
+P Y +VN D + LLNK FN I ++ + D
Sbjct: 222 QPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 281
Query: 92 TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
++ KG P Y +LI LC + +A +++ M E + +TF+ ++
Sbjct: 282 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 341
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
+ + EA L + M + + PD+ YN L+ +C L + + M + D
Sbjct: 342 KEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVV 401
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVM 267
TY+ L+ G C++ RVE+ L R M G TY ++ L G AQ V M
Sbjct: 402 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 461
Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
V G + D + L L + +A + M K ++K+
Sbjct: 462 VSDG--VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 503
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 35/202 (17%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
FP Y+TLI CK K++++ + M+ G +T+ ++ L + A
Sbjct: 397 FPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 456
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ + M V PD+ Y+ LL C G L V M++ ++ D Y ++ G C
Sbjct: 457 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 516
Query: 220 RAGRV-----------------------------------EEAFVLLRRMVDDGQSVLYS 244
+AG+V +EA+ LL++M +DG
Sbjct: 517 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSG 576
Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
TY ++ A LR G A + + +
Sbjct: 577 TYNTLIRAHLRDGDKAASAELI 598
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 96/208 (46%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + TLI L K EA+ +VD M + G + +T+ +++ L + + A L
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNL 247
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M+ ++ D+ +N ++ + C ++ + K+ME + + + TY +L+ C
Sbjct: 248 LNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCS 307
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
GR +A LL M++ + T+ ++ A ++ G + +A K R I D
Sbjct: 308 YGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFT 367
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
+ SL + +R ++A + + M +D
Sbjct: 368 YNSLVNGFCMHDRLDKAKQMFEFMVSKD 395
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P ++ LI K K EA ++ D M + T++ +++ R+++A +
Sbjct: 328 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 387
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
E M PD+ YN L+ +C + + + ++M L D TY L+ G
Sbjct: 388 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 447
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G + A + ++MV DG TY+ ++ L G +A++ +IKLD +
Sbjct: 448 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 507
Query: 281 FGSL 284
+ ++
Sbjct: 508 YTTM 511
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y L+ LC K+++AL V D M + L + ++ + + ++++ W L
Sbjct: 468 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 527
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ V P++ YN +++ C K L +LKKM+E+ ++ TY+ L+ R
Sbjct: 528 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLR 587
Query: 221 AGRVEEAFVLLRRM 234
G + L+R M
Sbjct: 588 DGDKAASAELIREM 601
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 99/216 (45%), Gaps = 16/216 (7%)
Query: 21 RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-- 78
R + G D T Y L+ H+ D + + + + D T++ + +
Sbjct: 424 REMSHRGLVGDTVT---YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 480
Query: 79 -----TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
E +L V + ++ +LD Y T+I +CK K+D+ + ++ G
Sbjct: 481 CNNGKLEKALEVFDYMQKSEIKLDI-----YIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 535
Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
+ +T++ ++S L + ++EA+ L++ MKE P+ YN L+ A+ G+ A++
Sbjct: 536 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA 595
Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
++++M + DA T LV GR++++F+
Sbjct: 596 ELIREMRSCRFVGDASTI-GLVANMLHDGRLDKSFL 630
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 88/213 (41%)
Query: 98 KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
+ P ++ L+ + K+KK D + + + M T++ +++ R ++ A
Sbjct: 80 RPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLA 139
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
L+ M ++ P + + LL YC ++ ++ +M E D T+ L+ G
Sbjct: 140 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 199
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
+ EA L+ RMV G TY V+ L + G A+ + I+ D
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEAD 259
Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
+F ++ L ++A + KEM + ++
Sbjct: 260 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 292
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%)
Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
K+D+A+ + M + S + F+ +LS + + K+ + L E M+ + + L YN
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
L+ +C + ++ +L KM + T +L+ G C R+ +A L+ +MV+
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
G T+ ++ L ++AV V
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALV 213
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
++++A GL M + R P + +N LL+A + +KM+ ++ TY+
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQ-------SVLYSTYAH---------VMGALLRL 256
L+ CR ++ A LL +M+ G S L + Y H ++ ++ +
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 257 GYYAQAVKFVMVCGG 271
GY + F + G
Sbjct: 185 GYRPDTITFTTLIHG 199
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 124/279 (44%), Gaps = 2/279 (0%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
P+ ++ L++A + + V L K R + T+N + N S +S
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 93 LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
L ++ K G+ P +L+ C K+I +A+ +VD M E G+ ITF ++ L
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
+ EA L++ M + P+L Y ++ C +G++ +L KME K+ AD
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187
Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
++ ++ C+ V++A L + M G TY+ ++ L G ++ A + +
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
+ I + F +L + +F EA + +M KR +
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 114/284 (40%), Gaps = 6/284 (2%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
+P Y +VN D++ LLNK FN I ++ + D
Sbjct: 147 QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 206
Query: 92 TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
++ KG P Y +LI LC + +A +++ M E + +TF+ ++
Sbjct: 207 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 266
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
+ + EA L + M + + PD+ YN L+ +C L + + M + D
Sbjct: 267 KEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLD 326
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVM 267
TY+ L+ G C++ RVE+ L R M G TY ++ L G AQ V M
Sbjct: 327 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 386
Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
V G + D + L L + +A + M K ++K+
Sbjct: 387 VSDG--VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 428
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 35/202 (17%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
FP Y+TLI CK K++++ + M+ G +T+ ++ L + A
Sbjct: 322 FPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 381
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ + M V PD+ Y+ LL C G L V M++ ++ D Y ++ G C
Sbjct: 382 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 441
Query: 220 RAGRV-----------------------------------EEAFVLLRRMVDDGQSVLYS 244
+AG+V +EA+ LL++M +DG
Sbjct: 442 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSG 501
Query: 245 TYAHVMGALLRLGYYAQAVKFV 266
TY ++ A LR G A + + +
Sbjct: 502 TYNTLIRAHLRDGDKAASAELI 523
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 80/184 (43%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P ++ LI K K EA ++ D M + T++ +++ R+++A +
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
E M PDL YN L+ +C + + + ++M L D TY L+ G
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 372
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G + A + ++MV DG TY+ ++ L G +A++ +IKLD +
Sbjct: 373 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 432
Query: 281 FGSL 284
+ ++
Sbjct: 433 YTTM 436
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%)
Query: 98 KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
+ P ++ L+ + K+KK D + + + M G + T++ +++ R ++ A
Sbjct: 5 RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 64
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
L+ M ++ P + + LL YC ++ ++ +M E D T+ L+ G
Sbjct: 65 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 124
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
+ EA L+ RMV G TY V+ L + G A + I+ D
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184
Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
+F ++ L ++A + KEM + ++
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 217
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y L+ LC K+++AL V D M + L + ++ + + ++++ W L
Sbjct: 393 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 452
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ V P++ YN +++ C K L +LKKM+E+ D+ TY+ L+ R
Sbjct: 453 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLR 512
Query: 221 AGRVEEAFVLLRRM 234
G + L+R M
Sbjct: 513 DGDKAASAELIREM 526
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 99/216 (45%), Gaps = 16/216 (7%)
Query: 21 RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-- 78
R + G D T Y L+ H+ D + + + + D T++ + +
Sbjct: 349 REMSHRGLVGDTVT---YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 405
Query: 79 -----TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133
E +L V + ++ +LD Y T+I +CK K+D+ + ++ G
Sbjct: 406 CNNGKLEKALEVFDYMQKSEIKLDI-----YIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 460
Query: 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193
+ +T++ ++S L + ++EA+ L++ MKE PD YN L+ A+ G+ A++
Sbjct: 461 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA 520
Query: 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
++++M + DA T LV GR++++F+
Sbjct: 521 ELIREMRSCRFVGDASTI-GLVANMLHDGRLDKSFL 555
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 93/209 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +L+ C K+I EA+ +VD M G+ + +TF+ ++ L + EA L
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
++ M PDL Y ++ C +G+ +L KME+ KL Y+ ++ G C+
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
+++A L + M G TY+ ++ L G ++ A + + R I D
Sbjct: 269 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 328
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
F +L + + EA + EM KR +
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSI 357
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
FP Y+TLI CK K+++E + V M++ G + +T++ ++ L + + A
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ + M V P++ YN LL C G L V + ++ K+ TY+ ++ G C
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+AG+VE+ + L + G Y ++ R G +A
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 67/130 (51%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y+T+I LCK K +D+AL + M G + +T+ ++S L R +A L+ M
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
E +++PD+ ++ L+ A+ +G L + +M + + TY +L+ G C R++
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378
Query: 226 EAFVLLRRMV 235
EA + MV
Sbjct: 379 EAKQMFEFMV 388
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 2/228 (0%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
+P Y +VN D + LLNK + +N I + + D
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALN 277
Query: 92 TLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
++ KG P Y +LI LC + +A R++ M E TF ++
Sbjct: 278 LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV 337
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
+ ++ EA L + M + + P + Y+ L+ +C L + + M + D
Sbjct: 338 KEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 397
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
TY+ L+ G C+ RVEE + R M G TY ++ L + G
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 69/134 (51%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+TL+ LCK K+++A+ V + + + T++ ++ + + ++E+ W L
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ V PD+ AYN +++ +C KG+ + K+M+E+ ++ Y+ L+ R
Sbjct: 524 FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 583
Query: 221 AGRVEEAFVLLRRM 234
G E + L++ M
Sbjct: 584 DGDREASAELIKEM 597
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 17/250 (6%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
+P+ Y L+N L+ + + CF T+N + E +
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417
Query: 85 VLSDLCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
V ++ + +G + Y+ LI L + D A + M G + +T++
Sbjct: 418 VFREMSQ------RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471
Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
+L L + ++E+A + E ++ ++ P + YN ++ C G + + + +
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531
Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG---YYA 260
+ D Y+ ++ G CR G EEA L + M +DG Y ++ A LR G A
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591
Query: 261 QAVKFVMVCG 270
+ +K + CG
Sbjct: 592 ELIKEMRSCG 601
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + LI K K+ EA ++ D M + S +T+ +++ R++EA +
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
E M PD+ YN L+ +C + V ++M + L + TY+ L+ G +
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
AG + A + + MV DG TY ++ L + G +A+
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 486
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 3/230 (1%)
Query: 81 NSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
N V+ L + L G P Y LI C+ ++ AL V+ M + G+ + +
Sbjct: 95 NKFDVVISLGEQMQNL--GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIV 152
Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
T +L+ KR+ EA L++ M P+ +N L+ + ++ +M
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM 212
Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
+ D TY +V G C+ G + AF LL +M Y ++ L + +
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 272
Query: 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
A+ + I+ + + SL S L R+++A+ +L +M +R +
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 322
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 93/204 (45%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P ++TLI L K EA+ ++D M G +T+ +++ L + + A+ L
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNL 243
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M++ ++ P + YN ++ C ++ + K+ME + + + TY +L+ C
Sbjct: 244 LNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN 303
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
GR +A LL M++ + T++ ++ A ++ G +A K R I
Sbjct: 304 YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVT 363
Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
+ SL + +R +EA + + M
Sbjct: 364 YSSLINGFCMHDRLDEAKQMFEFM 387
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 68/160 (42%)
Query: 98 KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
+ FP + L+ + K+ K D + + + M G + T+ +++ R ++ A
Sbjct: 76 RPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLA 135
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
++ M ++ P++ + LL YC ++ ++ +M + T++ L+ G
Sbjct: 136 LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHG 195
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
+ EA L+ RMV G TY V+ L + G
Sbjct: 196 LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ +I +CK K+++ + ++ G + ++ ++S R EEA L
Sbjct: 499 PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADAL 558
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ MKE P+ YN L+ A G+ A++ ++K+M DA T LV
Sbjct: 559 FKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLH 617
Query: 221 AGRVEEAFV 229
GR++++F+
Sbjct: 618 DGRLDKSFL 626
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
K+D+A+ + M + S I F +LS + + + + L E M+ + + + Y+
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
L+ +C + L VL KM + + T +L+ G C + R+ EA L+ +M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 238 G---QSVLYSTYAH 248
G +V ++T H
Sbjct: 181 GYQPNTVTFNTLIH 194
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 2/240 (0%)
Query: 72 TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
T+N + N S LS L ++ K G+ P ++L+ C +I EA+ +VD M
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161
Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
E G+ +TF ++ L + + EA L+E M PDL Y ++ C +G
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 221
Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
+L KME+ K+ AD Y ++ C+ V++A L M + G TY+ +
Sbjct: 222 DLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSL 281
Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
+ L G ++ A + + R I + F SL + EA + EM +R +
Sbjct: 282 ISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 341
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 6/239 (2%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD--- 88
+P Y+ L+N L+ + + C T+N + N + D
Sbjct: 342 DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME 401
Query: 89 LCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
L R ++R +G + Y TLI + D A V M G + +T++ +L
Sbjct: 402 LFRDMSR--RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 459
Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
L + ++E+A + E +++ ++ PD+ YN + C G + + + + + D
Sbjct: 460 LCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPD 519
Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
Y+ ++ G C+ G EEA+ L +M +DG TY ++ A LR G A + + +
Sbjct: 520 VIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELI 578
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 97 DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
+KG P Y +LI LC + +A R++ M E + +TF+ ++ + ++
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLI 327
Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
EA L + M + + P++ YN L+ +C L + M + D TY+ L+
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387
Query: 216 LGACRAGRVEEAFVLLRRMVDD---GQSVLYSTYAH 248
G C+A +V + L R M G +V Y+T H
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIH 423
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y T+I LCK + +D+AL + M G T+ ++S L R +A L+ M
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
E +++P++ +N L+ A+ +G L + +M + + + TY++L+ G C R++
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 362
Query: 226 EAFVLLRRMV 235
EA + MV
Sbjct: 363 EAQQIFTLMV 372
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 91/213 (42%)
Query: 98 KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
+ FP + L+ + K+KK D + + M G + T++ +++ L R ++ A
Sbjct: 60 RPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFA 119
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
++ M ++ P + N LL +C ++ ++ +M E D T+ LV G
Sbjct: 120 LAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHG 179
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
+ + EA L+ RMV G TY V+ L + G A+ + I+ D
Sbjct: 180 LFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEAD 239
Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
++ ++ L ++A + EM+ + ++
Sbjct: 240 VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIR 272
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 7/191 (3%)
Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
K+DEA+ + M + S + F +LS + + K+ + E M+ + VS +L YN
Sbjct: 45 KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104
Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
++ C + L+ +L KM + G T ++L+ G C R+ EA L+ +MV+
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164
Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV--MVCGGRDIKLDTELFGSLGSKLIGLERFN 295
G T+ ++ L + ++AV V MV G L T G+ + GL +
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVT-----YGAVINGLCKRG 219
Query: 296 EANFILKEMNK 306
E + L +NK
Sbjct: 220 EPDLALNLLNK 230
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%)
Query: 97 DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
D P Y+TL+ LCK K+++A+ V + + + T++ + + + ++E+
Sbjct: 444 DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED 503
Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
W L + V PD+ AYN +++ +C KG + KM+E+ D+ TY+ L+
Sbjct: 504 GWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIR 563
Query: 217 GACRAGRVEEAFVLLRRM 234
R G + L++ M
Sbjct: 564 AHLRDGDKAASAELIKEM 581
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 74/163 (45%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +++LI K K+ EA ++ D M + + +T++ +++ R++EA +
Sbjct: 308 PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 367
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+M PD+ YN L+ +C + + + M L + TY L+ G +
Sbjct: 368 FTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQ 427
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
A + A ++ ++MV DG TY ++ L + G +A+
Sbjct: 428 ASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 470
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 23/204 (11%)
Query: 38 YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97
Y L++ D + + + + D T+N ++L LC+ +L+
Sbjct: 418 YTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYN---------TLLDGLCKN-GKLE 467
Query: 98 KGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
K P Y+ + +CK K+++ + ++ G I ++ ++
Sbjct: 468 KAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMI 527
Query: 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205
S + EEA+ L MKE PD YN L+ A+ G+ A++ ++K+M +
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFA 587
Query: 206 ADARTYDALVLGACRAGRVEEAFV 229
DA TY LV GR+++ F+
Sbjct: 588 GDASTY-GLVTDMLHDGRLDKGFL 610
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 4/218 (1%)
Query: 95 RLDKGF---PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
R GF P ++++L K+K +DE + +M + + +T+ + +
Sbjct: 118 RASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCC-SPNVVTYSTWIDTFCKS 176
Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
++ A MK +SP++ + L+ YC G+L + K+M ++ + TY
Sbjct: 177 GELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTY 236
Query: 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271
AL+ G C+ G ++ A + RMV+D Y ++ + G A+KF+
Sbjct: 237 TALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLN 296
Query: 272 RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
+ ++LD +G + S L G + EA I+++M K DL
Sbjct: 297 QGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDL 334
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 111/260 (42%), Gaps = 4/260 (1%)
Query: 29 FPDEPTSAYYDDLVNAAGHERDLETVRYLLNK-RARD--CCFNTANTFNFITNTENSLSV 85
F EP Y+ L++ D+ + +L RA C +FN + N + + +
Sbjct: 85 FGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKM 144
Query: 86 LSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
L ++ + + K P Y T I CK ++ AL+ M + +TF +
Sbjct: 145 LDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCL 204
Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
+ + +E A L + M+ +R+S ++ Y L+ +C KG + + +M E+++
Sbjct: 205 IDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRV 264
Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
++ Y ++ G + G + A L +M++ G + + Y ++ L G +A +
Sbjct: 265 EPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATE 324
Query: 265 FVMVCGGRDIKLDTELFGSL 284
V D+ D +F ++
Sbjct: 325 IVEDMEKSDLVPDMVIFTTM 344
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 78 NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
+++N++ L+ + RLD +AY +I LC K+ EA +V+ M +
Sbjct: 283 DSDNAMKFLAKMLNQGMRLDI-----TAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPD 337
Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA---------------------- 175
+ F +++ + RM+ A + + E PD+ A
Sbjct: 338 MVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFC 397
Query: 176 --------YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
Y L+ A C +G+ + K+ E L D Y + + G C+ G + +A
Sbjct: 398 IEKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDA 457
Query: 228 FVLLRRMVDDG 238
F L RMV +G
Sbjct: 458 FKLKTRMVQEG 468
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Query: 97 DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
D+ P Y T+I + D A++ + M G L + I+S L +++E
Sbjct: 262 DRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKE 321
Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
A ++E M++ + PD+ + ++ AY G + A + K+ E D ++
Sbjct: 322 ATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMID 381
Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYST 245
G + G++ EA V ++ V+Y+
Sbjct: 382 GIAKNGQLHEAIVYF--CIEKANDVMYTV 408
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P K Y + I LCK + +A ++ M + G L + + ++ L M EA +
Sbjct: 436 PDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQV 495
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
+ M +SPD ++ L+ AY +GN+ A S +L M+ L
Sbjct: 496 FDEMLNSGISPDSAVFDLLIRAYEKEGNMAAASDLLLDMQRRGL 539
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/299 (17%), Positives = 109/299 (36%), Gaps = 38/299 (12%)
Query: 13 IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
I + LV S S F +P ++ L N + L+ V + + CC T
Sbjct: 107 IRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLK-CCSPNVVT 165
Query: 73 FNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
++ +T L ++ + D P + LI CK ++ A+ + M
Sbjct: 166 YSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMR 225
Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP------------------- 171
L+ +T+ ++ + M+ A + M E RV P
Sbjct: 226 RVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSD 285
Query: 172 ----------------DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
D+TAY +++ C G L + +++ ME+ L D + ++
Sbjct: 286 NAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMM 345
Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274
++GR++ A + ++++ G + ++ + + G +A+ + + D+
Sbjct: 346 NAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDV 404
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
+L+ + + G+ +F+ ++S + + +++ A ++ M PD+ +YN L+
Sbjct: 40 SLKFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLID 99
Query: 182 AYCFKGNLTATSGVLKKMEEEK---LGADARTYDALVLGACRAGRVEEAFVLLRRMVD-- 236
+C G++ + S VL+ + D ++++L G + ++E FV + M+
Sbjct: 100 GHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCC 159
Query: 237 DGQSVLYSTY 246
V YST+
Sbjct: 160 SPNVVTYSTW 169
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + TLI LC ++ EAL +VD M E G + IT + +++ L ++ +A L
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
++ M E P+ Y +L C G +L+KMEE K+ DA Y ++ G C+
Sbjct: 200 IDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK 259
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G ++ AF L M G Y ++ G + K + R I D
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDL 309
F +L + + EA + KEM +R +
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGI 348
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 2/236 (0%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
P + Y L++ E L+ ++L+ C TFN + N +++ D
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409
Query: 93 LARLD-KGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
++ +G + Y+TLI C+L K++ A + M +++ +L L
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469
Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
E+A + E +++ ++ D+ YN ++ C + + + + + D +T
Sbjct: 470 NGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT 529
Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
Y+ ++ G C+ G + EA +L R+M +DG S TY ++ A L G ++ K +
Sbjct: 530 YNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLI 585
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 5/198 (2%)
Query: 80 ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
++++ + ++ R+ R PR + L + + K+ D L + M G +
Sbjct: 54 DDAVDLFQEMTRSRPR-----PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLY 108
Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
T +++ R +++ A+ M + ++ PD ++ L+ C +G ++ ++ +M
Sbjct: 109 TLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRM 168
Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
E T +ALV G C G+V +A +L+ RMV+ G TY V+ + + G
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228
Query: 260 AQAVKFVMVCGGRDIKLD 277
A A++ + R IKLD
Sbjct: 229 ALAMELLRKMEERKIKLD 246
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y TLI C + D+ +++ M + + F ++ + ++ EA L + M
Sbjct: 285 YTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMI 344
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+ +SPD Y L+ +C + L + +L M + G + RT++ L+ G C+A ++
Sbjct: 345 QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLID 404
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
+ L R+M G TY ++ LG
Sbjct: 405 DGLELFRKMSLRGVVADTVTYNTLIQGFCELG 436
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 89/205 (43%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y +I LCK +D A + + M GF I + ++ R ++ L+ M
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+ +++PD+ A++ L+ + +G L + K+M + + D TY +L+ G C+ +++
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
+A +L MV G T+ ++ + ++ R + DT + +L
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429
Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
L + A + +EM R ++
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVR 454
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 85/206 (41%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y +LI CK ++D+A ++D+M G G + TF+ +++ + +++ L
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M V D YN L+ +C G L + ++M ++ D +Y L+ G C
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G E+A + ++ + Y ++ + A + +K D +
Sbjct: 470 NGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT 529
Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
+ + L +EA+ + ++M +
Sbjct: 530 YNIMIGGLCKKGSLSEADLLFRKMEE 555
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 2/226 (0%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
EP + + L+N E + L+++ T T N + N +SD
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL 198
Query: 92 TLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
+ R+ + GF P + Y ++ +CK + A+ ++ M E L A+ + I+ L
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLC 258
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
+ ++ A+ L M+ D+ Y L+ +C+ G + +L+ M + K+ D
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
+ AL+ + G++ EA L + M+ G S TY ++ +
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P A+ LI K K+ EA + M + G +T+ ++ + ++++A +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS-GVLKKMEEEKLGADARTYDALVLGAC 219
+++M P++ +N L+ YC K NL + +KM + AD TY+ L+ G C
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYC-KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433
Query: 220 RAGRVEEAFVLLRRMV 235
G++E A L + MV
Sbjct: 434 ELGKLEVAKELFQEMV 449
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
Query: 91 RTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
R R+ +G FP TL+ K + + + R + + G+ + F+ +LS+
Sbjct: 582 RIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIF 641
Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
TR ++A G++E ++E +SPDL YN L+ Y +G +LK +E+ +L D
Sbjct: 642 TRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDL 701
Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
+Y+ ++ G CR G ++EA +L M + G TY + +G +A+ ++ V+
Sbjct: 702 VSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAE-IEDVIE 760
Query: 269 CGGRD 273
C ++
Sbjct: 761 CMAKN 765
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 60/143 (41%)
Query: 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182
L V+D M G T +LS R + EA +K P YN LL
Sbjct: 266 LGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQV 325
Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
+ G T VLK+MEE AD+ TY+ LV RAG +EA ++ M G
Sbjct: 326 FGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPN 385
Query: 243 YSTYAHVMGALLRLGYYAQAVKF 265
TY V+ A + G +A+K
Sbjct: 386 AITYTTVIDAYGKAGKEDEALKL 408
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y T+I K K DEAL++ M E G + T++ +LS+L + R E +
Sbjct: 384 PNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKM 443
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ MK SP+ +N +L KG + V ++M+ D T++ L+ R
Sbjct: 444 LCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGR 503
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
G +A + M G + +TY ++ AL R G +
Sbjct: 504 CGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDW 542
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
G+ +T++ +L V + EA +++ M+E D YN L+ AY G
Sbjct: 311 GYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEA 370
Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252
+GV++ M ++ + +A TY ++ +AG+ +EA L M + G TY V+
Sbjct: 371 AGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSL 430
Query: 253 LLRLGYYAQAVKFVMVC 269
L + + +K M+C
Sbjct: 431 LGKKSRSNEMIK--MLC 445
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 114/285 (40%), Gaps = 12/285 (4%)
Query: 33 PTSAYYDDLVNAAGHE-RDLETVRYLLNKRARDCCFN--TANTFNFITNTENSLSVLSDL 89
P + Y+ +++ G + R E ++ L + ++ C N T NT + + ++ +
Sbjct: 419 PNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRV 478
Query: 90 CRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
R + GF P + ++TLI + +A ++ M GF T++ +L+ L
Sbjct: 479 FREMKSC--GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNAL 536
Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
R ++ MK P T+Y+ +L Y GN + +++E ++
Sbjct: 537 ARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSW 596
Query: 209 RTYDALVLG--ACRA-GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
L+L CRA E AF L ++ V++++ ++ R Y QA
Sbjct: 597 MLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNS---MLSIFTRNNMYDQAEGI 653
Query: 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
+ + D + SL + +A ILK + K LK
Sbjct: 654 LESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLK 698
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 7/190 (3%)
Query: 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181
A +++D + + L + IL +R + E+A L E MKE+ SP L YN +L
Sbjct: 194 AAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILD 253
Query: 182 AYCFKG-NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA---FVLLRRMVDD 237
+ G + GVL +M + L D T ++ R G + EA F L+ +
Sbjct: 254 VFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYE 313
Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
+V Y+ V G + G Y +A+ + D+ + L + + EA
Sbjct: 314 PGTVTYNALLQVFG---KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEA 370
Query: 298 NFILKEMNKR 307
+++ M K+
Sbjct: 371 AGVIEMMTKK 380
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 61/140 (43%)
Query: 95 RLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154
R D P Y++L+ + + +A ++ + + ++++ ++ R M
Sbjct: 658 REDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLM 717
Query: 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214
+EA ++ M E + P + YN ++ Y G V++ M + + T+ +
Sbjct: 718 QEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMV 777
Query: 215 VLGACRAGRVEEAFVLLRRM 234
V G CRAG+ EA + ++
Sbjct: 778 VDGYCRAGKYSEAMDFVSKI 797
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +Y+T+I C+ + EA+R++ M E G T++ +S T E +
Sbjct: 699 PDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDV 758
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
+E M + P+ + ++ YC G + + K++
Sbjct: 759 IECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIK 798
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 2/235 (0%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
+P ++ L++ E +L R L + R T+N + N L D
Sbjct: 251 DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKY 310
Query: 92 TL-ARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
+ KG FP Y+TLI CK K++++ +++ M G A T++ ++
Sbjct: 311 MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 370
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
+ ++ A + M + VSPD+ YN LL C G + +++ +++ ++ D
Sbjct: 371 QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 430
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
TY+ ++ G CR +++EA+ L R + G Y ++ L R G +A K
Sbjct: 431 TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADK 485
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 22/218 (10%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
P Y+ L+N L +Y+ + CF T+N ++++ C++
Sbjct: 287 PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYN---------TLITGFCKS 337
Query: 93 LARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
R++ G Y+TLI C+ K++ A +V + M + G +T
Sbjct: 338 -KRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVT 396
Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
++ +L L ++E+A ++E +++ + D+ YN ++ C L + + +
Sbjct: 397 YNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLT 456
Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
+ + DA Y ++ G CR G EA L RRM +DG
Sbjct: 457 RKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 494
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 11/227 (4%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y++LI C + +A + D+M G +T++ +++ + KR+E+ L
Sbjct: 287 PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 346
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M + D YN L+ YC G L V +M + + D TY+ L+ C
Sbjct: 347 FCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCN 406
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G++E+A V++ + V TY ++ L R +A + +K D
Sbjct: 407 NGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIA 466
Query: 281 FGSLGSKLI--GLERFNEANFILKEMNKRDLKMGFK------LRDYY 319
+ ++ S L GL+R EA+ + + M K D M + LRD+Y
Sbjct: 467 YITMISGLCRKGLQR--EADKLCRRM-KEDGFMPSERIYDETLRDHY 510
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 99 GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
GF P Y+T+I LCK + ++ AL V M + G A+T++ ++S L+ R +A
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
L+ M + ++ P++ + L+ + +GNL + K+M + + TY++L+ G
Sbjct: 239 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 298
Query: 218 ACRAGRVEEAFVLLRRMVDDG 238
C G + +A + MV G
Sbjct: 299 FCIHGCLGDAKYMFDLMVSKG 319
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 118/283 (41%), Gaps = 8/283 (2%)
Query: 33 PTSAYYDDLVNAAGHERDLET---VRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89
P Y+ ++N RDL V Y + K+ A T+N + + ++ +D
Sbjct: 182 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRA---DAVTYNTLISGLSNSGRWTDA 238
Query: 90 CRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
R L + K P + LI K + EA + M + T++ +++
Sbjct: 239 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 298
Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
+ +A + ++M PD+ YN L+T +C + + +M + L D
Sbjct: 299 FCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 358
Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
A TY+ L+ G C+AG++ A + RMVD G S TY ++ L G +A+ V
Sbjct: 359 AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVE 418
Query: 268 VCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
++ +D + + L ++ EA + + + ++ +K
Sbjct: 419 DLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVK 461
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
++ LI C+ ++ AL ++ M + GF S +T +L+ +G R +EA L++ M
Sbjct: 116 SFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM 175
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
P++ YN ++ C +L V ME++ + ADA TY+ L+ G +GR
Sbjct: 176 DGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRW 235
Query: 225 EEAFVLLRRMV 235
+A LLR MV
Sbjct: 236 TDAARLLRDMV 246
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 99 GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
GF P +L+ C+ + EA+ +VD M GF + + ++ +++ L + + + A
Sbjct: 144 GFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNA 203
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
+ M++ + D YN L++ G T + +L+ M + K+ + + AL+
Sbjct: 204 LEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDT 263
Query: 218 ACRAGRVEEAFVLLRRMV 235
+ G + EA L + M+
Sbjct: 264 FVKEGNLLEARNLYKEMI 281
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 83/192 (43%)
Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
K D+A + M + S + F +L+V+ + + + L M+ + +S DL ++
Sbjct: 59 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118
Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
L+ +C L+ +L KM + T +L+ G C+ R +EA L+ M
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 178
Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
G Y V+ L + A++ + I+ D + +L S L R+ +A
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238
Query: 298 NFILKEMNKRDL 309
+L++M KR +
Sbjct: 239 ARLLRDMVKRKI 250
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/212 (17%), Positives = 76/212 (35%)
Query: 98 KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
+ P + ++ + K+ K D + + M G +F ++ R R+ A
Sbjct: 74 RPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLA 133
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
L+ M ++ P + LL +C ++ M+ + Y+ ++ G
Sbjct: 134 LALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVING 193
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
C+ + A + M G TY ++ L G + A + + R I +
Sbjct: 194 LCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPN 253
Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
F +L + EA + KEM +R +
Sbjct: 254 VIFFTALIDTFVKEGNLLEARNLYKEMIRRSV 285
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 121/277 (43%), Gaps = 4/277 (1%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFITNTENSLSVLSDLCR 91
P Y+ L++ E+D +T L ++ D + T N + + + + D +
Sbjct: 217 PDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLK 276
Query: 92 TLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
R+ + K Y +LI LC +D+A V + + E + +T++ +L
Sbjct: 277 IWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFC 336
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
R +++E+ L +M E + S ++ +YN L+ G + + + + M + AD
Sbjct: 337 RCGKIKESLELWRIM-EHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKT 395
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
TY + G C G V +A +++ + G + YA ++ L + +A V
Sbjct: 396 TYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEM 455
Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
++L++ + +L LI R EA+F L+EM K
Sbjct: 456 SKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGK 492
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 90/206 (43%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
AY ++I LCK K+++EA +V M++ G L++ + ++ L R R+ EA + M
Sbjct: 431 AYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREM 490
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
+ P + +YN L+ C G S +K+M E D +TY L+ G CR ++
Sbjct: 491 GKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKI 550
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
+ A L + + G + ++ L +G A+ + R+ + + +L
Sbjct: 551 DLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTL 610
Query: 285 GSKLIGLERFNEANFILKEMNKRDLK 310
+ N A I M K L+
Sbjct: 611 MEGFFKVGDSNRATVIWGYMYKMGLQ 636
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 107/237 (45%), Gaps = 10/237 (4%)
Query: 78 NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137
N + + SV ++L A +D Y+T++G C+ KI E+L + IM E ++
Sbjct: 305 NVDKAESVFNELDERKASIDV-----VTYNTMLGGFCRCGKIKESLELWRIM-EHKNSVN 358
Query: 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197
++++ ++ L +++EA + +M + D T Y + C G + GV++
Sbjct: 359 IVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQ 418
Query: 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
++E D Y +++ C+ R+EEA L++ M G + ++G L+R
Sbjct: 419 EVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDS 478
Query: 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314
+A F+ G + + L L +F EA+ +KEM L+ G+K
Sbjct: 479 RLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEM----LENGWK 531
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 133/326 (40%), Gaps = 40/326 (12%)
Query: 23 FTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82
F +G P+ T Y+ L+ + +++ E R L+ ++ +++ + N
Sbjct: 140 FETAGVAPNLQT---YNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAK 196
Query: 83 LSVLSDLCRTLARL-DKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
L D + ++G P + Y+ LI K K A+ + D + E +
Sbjct: 197 AGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVK 256
Query: 141 FHPIL-SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
H I+ S L++ R+++ + E MK+ DL Y+ L+ C GN+ V ++
Sbjct: 257 THNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNEL 316
Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM-----------------------VD 236
+E K D TY+ ++ G CR G+++E+ L R M +D
Sbjct: 317 DERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGLLENGKID 376
Query: 237 D-----------GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
+ G + +TY + L GY +A+ + LD + S+
Sbjct: 377 EATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASII 436
Query: 286 SKLIGLERFNEANFILKEMNKRDLKM 311
L +R EA+ ++KEM+K +++
Sbjct: 437 DCLCKKKRLEEASNLVKEMSKHGVEL 462
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 1/159 (0%)
Query: 98 KGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
KG+ K+ Y I LC +++AL V+ + G L + I+ L + KR+EE
Sbjct: 388 KGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEE 447
Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
A L++ M + V + N L+ L S L++M + +Y+ L+
Sbjct: 448 ASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILIC 507
Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
G C+AG+ EA ++ M+++G TY+ ++ L R
Sbjct: 508 GLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCR 546
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 69/165 (41%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +Y+ LI LCK K EA V M E G+ T+ +L L R ++++ A L
Sbjct: 497 PTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALEL 556
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ + D+ +N L+ C G L V+ ME A+ TY+ L+ G +
Sbjct: 557 WHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFK 616
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
G A V+ M G +Y +M L + A++F
Sbjct: 617 VGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEF 661
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Query: 120 DEALRVVDIMAEGGFGLSAI--TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
D+AL V M E FG +++ +L+ K+ + L + V+P+L YN
Sbjct: 95 DQALDVFKRMREI-FGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYN 153
Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
L+ C K G L M +E D +Y ++ +AG++++A L M +
Sbjct: 154 VLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSER 213
Query: 238 GQSVLYSTYAHVMGALLR 255
G + + Y ++ L+
Sbjct: 214 GVAPDVTCYNILIDGFLK 231
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/180 (18%), Positives = 72/180 (40%), Gaps = 1/180 (0%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y ++ RL + + ++ R+V+++ ++ + ++A + + M+
Sbjct: 46 YHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMR 105
Query: 166 EI-RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
EI P + +YN LL A+ + E + + +TY+ L+ +C+
Sbjct: 106 EIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEF 165
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
E+A L M +G +Y+ V+ L + G A++ R + D + L
Sbjct: 166 EKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNIL 225
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 144/307 (46%), Gaps = 18/307 (5%)
Query: 6 KLPTKFLIPQS-VLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD 64
+L + +I +S ++V R++ K+ PD+ ++ +V+ +R +++ +LN +
Sbjct: 104 RLENRVIIERSFIVVFRAYGKA-HLPDKAVDLFHR-MVDEFRCKRSVKSFNSVLNVIINE 161
Query: 65 CCFNTANTF-NFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEAL 123
++ F +++ N+ ++++ P +++ +I LCKL+ +D A+
Sbjct: 162 GLYHRGLEFYDYVVNSNMNMNI--------------SPNGLSFNLVIKALCKLRFVDRAI 207
Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
V M E T+ ++ L + +R++EA L++ M+ SP YN L+
Sbjct: 208 EVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGL 267
Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
C KG+LT + ++ M + + TY+ L+ G C G++++A LL RMV
Sbjct: 268 CKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPND 327
Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
TY ++ L++ AV+ + R L+ ++ L S L + EA + ++
Sbjct: 328 VTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRK 387
Query: 304 MNKRDLK 310
M ++ K
Sbjct: 388 MAEKGCK 394
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 123/294 (41%), Gaps = 5/294 (1%)
Query: 13 IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
I ++VL+ G P+ Y+ L++ + DL V L++ C T
Sbjct: 238 IDEAVLLLDEMQSEGC---SPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVT 294
Query: 73 FNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
+N + + L L R+ K P Y TLI L K ++ +A+R++ M
Sbjct: 295 YNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSME 354
Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
E G+ L+ + ++S L + + EEA L M E P++ Y+ L+ C +G
Sbjct: 355 ERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPN 414
Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
+L +M +A TY +L+ G + G EEA + + M G S Y+ ++
Sbjct: 415 EAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLI 474
Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
L +G +A+ IK DT + S+ L G+ + A + EM
Sbjct: 475 DGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEM 528
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 2/266 (0%)
Query: 41 LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD--K 98
++N + R LE Y++N +FN + L + + K
Sbjct: 158 IINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERK 217
Query: 99 GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158
P Y TL+ LCK ++IDEA+ ++D M G S + ++ ++ L + +
Sbjct: 218 CLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVT 277
Query: 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218
L++ M P+ YN L+ C KG L +L++M K + TY L+ G
Sbjct: 278 KLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGL 337
Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278
+ R +A LL M + G + Y+ ++ L + G +A+ + K +
Sbjct: 338 VKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNI 397
Query: 279 ELFGSLGSKLIGLERFNEANFILKEM 304
++ L L + NEA IL M
Sbjct: 398 VVYSVLVDGLCREGKPNEAKEILNRM 423
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 3/142 (2%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
P Y +L+ K +EA++V M + G + + ++ L R++EA
Sbjct: 429 LPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMM 488
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM---EEEKLGADARTYDALVL 216
+ M I + PD AY+ ++ C G++ A + +M EE K D TY+ L+
Sbjct: 489 VWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLD 548
Query: 217 GACRAGRVEEAFVLLRRMVDDG 238
G C + A LL M+D G
Sbjct: 549 GLCMQKDISRAVDLLNSMLDRG 570
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 14/216 (6%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
+P Y LV+ E + +LN+ C A T++ + + + +
Sbjct: 394 KPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453
Query: 92 TLARLDK-GFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
+DK G R K Y LI LC + ++ EA+ V M G + + I+ L
Sbjct: 454 VWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLC 513
Query: 150 RGKRMEEAWGL---MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
M+ A L M +E + PD+ YN LL C + +++ +L M +
Sbjct: 514 GIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDP 573
Query: 207 DARTYDALV------LGACRAGR--VEEAFV-LLRR 233
D T + + +C GR +EE V LL+R
Sbjct: 574 DVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKR 609
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 73 FNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
FN + N + + D + L ++ + G P S Y+TLI K + + ++D+M
Sbjct: 118 FNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLML 177
Query: 131 EGG---FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
E G G + TF+ ++ + K++EEAW +++ M+E V PD YN + T Y KG
Sbjct: 178 EEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKG 237
Query: 188 -NLTATSGVLKKM-EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
+ A S V++KM +EK + RT +V G CR GRV + +RRM
Sbjct: 238 ETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRM 286
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 6/153 (3%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +Y TL+ + K+ +V + + G L +I F+ +++ + ME+A
Sbjct: 78 PSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDAVQA 137
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE---KLGADARTYDALVLG 217
+ MKE+ ++P + YN L+ Y G +S +L M EE +G + RT++ LV
Sbjct: 138 LLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQA 197
Query: 218 ACRAGRVEEAFVLLRRMVDDG---QSVLYSTYA 247
C+ +VEEA+ ++++M + G +V Y+T A
Sbjct: 198 WCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIA 230
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 10/221 (4%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNK------RARDCCFNTANTFNFITNTENSLSVL 86
P ++ LV A ++ +E ++ K R +NT T ++ E ++
Sbjct: 186 PNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATC-YVQKGE-TVRAE 243
Query: 87 SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
S++ + +K P ++G C+ ++ + LR V M E + + F+ +++
Sbjct: 244 SEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLIN 303
Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
+ ++ +MKE V D+ Y+ ++ A+ G + + V K+M + +
Sbjct: 304 GFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKP 363
Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS--VLYST 245
DA Y L G RA ++A LL ++ + + V+++T
Sbjct: 364 DAHAYSILAKGYVRAKEPKKAEELLETLIVESRPNVVIFTT 404
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
EA V +AE G S I++ +L+ +T K+ ++ +++ D +N ++
Sbjct: 63 EAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVI 122
Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
A+ GN+ L KM+E L TY+ L+ G AG+ E + LL M+++G
Sbjct: 123 NAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEG 180
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 3/166 (1%)
Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
+++VL R EA + + + E P L +Y LL A + + S ++ ++E+
Sbjct: 51 LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110
Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM---GALLRLGYYA 260
D+ ++A++ +G +E+A L +M + G + STY ++ G + +
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSS 170
Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
+ + ++ G D+ + F L ++ EA ++K+M +
Sbjct: 171 ELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEE 216
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y T++ +++A +V M + G A + + R K ++A L+E +
Sbjct: 333 YSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLETLI 392
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+ P++ + +++ +C G++ V KM + + + +T++ L+ G +
Sbjct: 393 -VESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPW 451
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
+A +L+ M G ST+ + A G ++ K + +DI++
Sbjct: 452 KAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLTDESNKAINALKCKDIEI 502
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%)
Query: 97 DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
D FP Y+ ++ +LCK + +A +V D M E G + +T++ ++ L R ++ E
Sbjct: 262 DGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNE 321
Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
A +++ MK ++P+L YN L+ +C G L + + ++ L TY+ LV
Sbjct: 322 ANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVS 381
Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276
G CR G A +++ M + G TY ++ R +A++ + +
Sbjct: 382 GFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVP 441
Query: 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
D + L + NEA+ + K M +++
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
Query: 89 LCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147
LCR L +G P Y+ L+ C+ A ++V M E G S +T+ ++
Sbjct: 360 LCRDLK--SRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417
Query: 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207
R ME+A L M+E+ + PD+ Y+ L+ +C KG + S + K M E+ +
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPN 477
Query: 208 ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV- 266
Y+ ++LG C+ G A LL+ M + + ++Y +++ L + +A + V
Sbjct: 478 EVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVE 537
Query: 267 -MVCGGRD 273
M+ G D
Sbjct: 538 KMIDSGID 545
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
Y LI L K + + + M E G + T++ +++ L + R ++A+ + + M
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
+E VS ++ YN L+ C + L + V+ +M+ + + + TY+ L+ G C G++
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL 354
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275
+A L R + G S TY ++ R G + A K V R IK
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIK 405
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 1/213 (0%)
Query: 99 GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
GF P Y TLI CK +I++A + M + G + T+ +++ L + ++
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQG 252
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
+ + E M+E V P+L YN ++ C G V +M E + + TY+ L+ G
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGG 312
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
CR ++ EA ++ +M DG + TY ++ +G +A+ R +
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372
Query: 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
+ L S + A ++KEM +R +K
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIK 405
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%)
Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
L +F ++ +E+++ L+ + E SP++ Y L+ C KG + +
Sbjct: 161 LDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDL 220
Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
+M + L A+ RTY L+ G + G ++ F + +M +DG TY VM L +
Sbjct: 221 FFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCK 280
Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
G A + R + + + +L L + NEAN ++ +M
Sbjct: 281 DGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 91/205 (44%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
++ LI C+ +I+++ ++ + E GF + + + ++ + +E+A L M
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
++ + + Y L+ G + +KM+E+ + + TY+ ++ C+ GR
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT 284
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
++AF + M + G S TY ++G L R +A K V I + + +L
Sbjct: 285 KDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTL 344
Query: 285 GSKLIGLERFNEANFILKEMNKRDL 309
G+ + +A + +++ R L
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGL 369
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 1/157 (0%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y+ +I + + ++ ++ + M + GF + F+ +L+ + + W K
Sbjct: 97 YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENK 156
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+V D+ ++ L+ C G + + +L ++ E + Y L+ G C+ G +E
Sbjct: 157 S-KVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIE 215
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+A L M G TY ++ L + G Q
Sbjct: 216 KAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQG 252
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRMEEAWG 159
P Y TL+ + K++ A+ + + M G + TF+ + + RGK E
Sbjct: 382 PDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTE---- 437
Query: 160 LMEVMKEIRV---SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
+M++ EI V SPD+ +N LL + G + SGV K+M+ + T++ L+
Sbjct: 438 MMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLIS 497
Query: 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
R G E+A + RRM+D G + STY V+ AL R G + Q+ K
Sbjct: 498 AYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEK 545
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 115/277 (41%), Gaps = 13/277 (4%)
Query: 38 YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLA--- 94
Y L++A + + K D C T T+N I N + + +L
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270
Query: 95 RLDKGFPRKSAYDTLIGRLCKLKKI-DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153
+ D P Y+TLI CK + EA +V + M GF +T++ +L V + R
Sbjct: 271 KSDGIAPDAYTYNTLI-TCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHR 329
Query: 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213
+EA ++ M SP + YN L++AY G L + +M E+ D TY
Sbjct: 330 PKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389
Query: 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF---VMVCG 270
L+ G RAG+VE A + M + G T+ + G + + +K + VCG
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCG 449
Query: 271 -GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306
DI L G G++ +E + + KEM +
Sbjct: 450 LSPDIVTWNTLLAVFGQN--GMD--SEVSGVFKEMKR 482
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 90/208 (43%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
PR TL+ K + EA R + E GF T + ++S+ R + + +A G+
Sbjct: 592 PRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGV 651
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
++ MKE +P + YN L+ + + + +L+++ + + D +Y+ ++ CR
Sbjct: 652 LDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCR 711
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
R+ +A + M + G TY +G+ + +A+ V + +
Sbjct: 712 NTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNT 771
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
+ S+ L R +EA ++++ D
Sbjct: 772 YNSIVDGYCKLNRKDEAKLFVEDLRNLD 799
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%)
Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
+I L K ++ A + + + E GF L ++ ++S R EA + + M+E
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238
Query: 169 VSPDLTAYNYLLTAYCFKGN-LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227
P L YN +L + G + +++KM+ + + DA TY+ L+ R +EA
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298
Query: 228 FVLLRRMVDDGQSVLYSTY 246
+ M G S TY
Sbjct: 299 AQVFEEMKAAGFSYDKVTY 317
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 87/213 (40%), Gaps = 16/213 (7%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT---------NTENSL 83
P+ Y+ L++A + L+ L N+ A + F + T E+++
Sbjct: 347 PSIVTYNSLISAYARDGMLDEAMELKNQMAEKG--TKPDVFTYTTLLSGFERAGKVESAM 404
Query: 84 SVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
S+ ++ + P ++ I K E +++ D + G +T++
Sbjct: 405 SIFEEMRNAGCK-----PNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNT 459
Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
+L+V + E G+ + MK P+ +N L++AY G+ V ++M +
Sbjct: 460 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG 519
Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236
+ D TY+ ++ R G E++ +L M D
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMED 552
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 99 GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
GF P + ++TLI + ++A+ V M + G T++ +L+ L RG E++
Sbjct: 484 GFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQS 543
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAY 183
++ M++ R P+ Y LL AY
Sbjct: 544 EKVLAEMEDGRCKPNELTYCSLLHAY 569
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 2/167 (1%)
Query: 91 RTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
+ LA ++ G P + Y +L+ K+I + + + G A+ ++ V
Sbjct: 545 KVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVC 604
Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
++ + EA +KE SPD+T N +++ Y + + +GVL M+E
Sbjct: 605 SKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSM 664
Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
TY++L+ R+ ++ +LR ++ G +Y V+ A R
Sbjct: 665 ATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCR 711
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 36/72 (50%)
Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
+G +++ + + ++E+ D +Y +L+ +GR EA + ++M +DG T
Sbjct: 186 EGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLIT 245
Query: 246 YAHVMGALLRLG 257
Y ++ ++G
Sbjct: 246 YNVILNVFGKMG 257
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 2/240 (0%)
Query: 72 TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
T++ + N S LS LA++ K G+ P ++L+ C +I +A+ +V M
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177
Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
E G+ + TF+ ++ L R R EA L++ M PDL Y ++ C +G++
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237
Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
+LKKME+ K+ Y+ ++ C V +A L M + G TY +
Sbjct: 238 DLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 297
Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
+ L G ++ A + + R I + F +L + + EA + EM KR +
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
FP Y+TLI CK K++DE + + M++ G + +T+ ++ + + + A
Sbjct: 393 FPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQI 452
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ + M V PD+ Y+ LL C G + V + ++ K+ D TY+ ++ G C
Sbjct: 453 VFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMC 512
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+AG+VE+ + L + G TY +M R G +A
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 555
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 9/236 (3%)
Query: 18 LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT 77
LV R K G PD T Y +VN D++ LL K + +N I
Sbjct: 208 LVDRMVVK-GCQPDLVT---YGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTII 263
Query: 78 NTENSLSVLSDLCRTLARLD-KGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
+ + ++D +D KG P Y++LI LC + +A R++ M E
Sbjct: 264 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 323
Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
+ +TF ++ + ++ EA L + M + + PD+ Y+ L+ +C L +
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383
Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD---GQSVLYSTYAH 248
+ M + + TY+ L+ G C+A RV+E L R M G +V Y+T H
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIH 439
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 99/208 (47%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P ++TLI L + + EA+ +VD M G +T+ +++ L + ++ A L
Sbjct: 184 PDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSL 243
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
++ M++ ++ P + YN ++ A C N+ + +M+ + + + TY++L+ C
Sbjct: 244 LKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 303
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
GR +A LL M++ + T++ ++ A ++ G +A K R I D
Sbjct: 304 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 363
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
+ SL + +R +EA + + M +D
Sbjct: 364 YSSLINGFCMHDRLDEAKHMFELMISKD 391
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 110/262 (41%), Gaps = 13/262 (4%)
Query: 49 RDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDT 108
RD VRY R N N ++++++ D+ ++ + FP +
Sbjct: 40 RDFSGVRY----DYRKISINRLNDLKL----DDAVNLFGDMVKS-----RPFPSIVEFSK 86
Query: 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168
L+ + K+ K D + + + M G + T+ +++ R ++ A ++ M ++
Sbjct: 87 LLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLG 146
Query: 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228
PD+ N LL +C ++ ++ +M E D+ T++ L+ G R R EA
Sbjct: 147 YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAV 206
Query: 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288
L+ RMV G TY V+ L + G A+ + I+ ++ ++ L
Sbjct: 207 ALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDAL 266
Query: 289 IGLERFNEANFILKEMNKRDLK 310
+ N+A + EM+ + ++
Sbjct: 267 CNYKNVNDALNLFTEMDNKGIR 288
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 22/247 (8%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
+P Y L+N L+ +++ CF T+N +++ C+
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN---------TLIKGFCK 408
Query: 92 TLARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
R+D+G Y TLI + ++ D A V M G +
Sbjct: 409 A-KRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIM 467
Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
T+ +L L ++E A + E ++ ++ PD+ YN ++ C G + + +
Sbjct: 468 TYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 527
Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259
+ + + TY ++ G CR G EEA L R M ++G TY ++ A LR G
Sbjct: 528 SLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDK 587
Query: 260 AQAVKFV 266
A + + +
Sbjct: 588 AASAELI 594
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 2/234 (0%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
EP Y+ +++A + +++ L + T+N + + SD R
Sbjct: 253 EPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312
Query: 92 TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
L+ + K P + LI K K+ EA ++ D M + T+ +++
Sbjct: 313 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 372
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
R++EA + E+M P++ YN L+ +C + + ++M + L +
Sbjct: 373 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
TY L+ G +A + A ++ ++MV DG TY+ ++ L G A+
Sbjct: 433 TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETAL 486
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%)
Query: 97 DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156
D P Y L+ LC K++ AL V + + T++ ++ + + ++E+
Sbjct: 460 DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519
Query: 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216
W L + V P++ Y +++ +C KG + ++M+EE D+ TY+ L+
Sbjct: 520 GWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIR 579
Query: 217 GACRAGRVEEAFVLLRRM 234
R G + L+R M
Sbjct: 580 AHLRDGDKAASAELIREM 597
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ +I +CK K+++ + ++ G + +T+ ++S R EEA L
Sbjct: 499 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADAL 558
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
MKE PD YN L+ A+ G+ A++ ++++M + DA T LV
Sbjct: 559 FREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI-GLVTNMLH 617
Query: 221 AGRVEEAFV 229
GR++++F+
Sbjct: 618 DGRLDKSFL 626
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 125/278 (44%), Gaps = 3/278 (1%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVLSDLCR 91
P + ++L+N G +E + + ++ C T ++N + S + +S++
Sbjct: 336 PDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSS 395
Query: 92 TLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
++ D P + Y LI CK ++++AL +++ M E GF + +++ L
Sbjct: 396 WFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALG 455
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
+ KR E A L + +KE + Y ++ + G L+ + +M+ + G D
Sbjct: 456 KAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVY 515
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269
Y+AL+ G +AG + EA LLR+M ++G +++ ++ R G +A++
Sbjct: 516 AYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETI 575
Query: 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307
IK D + +L F EA +++EM +
Sbjct: 576 KHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDK 613
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 114/269 (42%), Gaps = 3/269 (1%)
Query: 19 VTRSFTKSGAFPDEPTSAYYDDLVNAAGHER-DLETVRYLLNKRARDCCFNTANTFNFIT 77
+T F++ G + PT Y+ ++ A + + V +K D + T++ +
Sbjct: 357 LTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILI 416
Query: 78 NTENSLSVLSDLCRTLARLD-KGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
+ + + L +D KGFP +AY +LI L K K+ + A + + E
Sbjct: 417 DGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGN 476
Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
+S+ + ++ + ++ EA L MK PD+ AYN L++ G + + +
Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSL 536
Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
L+KMEE AD +++ ++ G R G A + + G TY ++G
Sbjct: 537 LRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAH 596
Query: 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
G + +A + + + + D + S+
Sbjct: 597 AGMFEEAARMMREMKDKGFEYDAITYSSI 625
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 128/302 (42%), Gaps = 53/302 (17%)
Query: 32 EPTSAYYDD----LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87
+PTS+ Y+ L+ HE+ E + N+ CF T++ + ++ L
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD---CFPDTITYSALISSYEKLGRND 250
Query: 88 DLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPIL 145
R + P + Y TL+G K+ K+++AL + + M G + T+ ++
Sbjct: 251 SAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 146 SVLTRGKRMEEAWG-------------------LMEVMKEI----------------RVS 170
L + R++EA+G LM ++ ++ R +
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT 370
Query: 171 PDLTAYNYLLTA-YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229
P + +YN ++ A + K +++ S KM+ + + TY L+ G C+ RVE+A +
Sbjct: 371 PTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALL 430
Query: 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289
LL M + G + Y ++ AL + Y A + +++K E FG++ S++
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELF-----KELK---ENFGNVSSRVY 482
Query: 290 GL 291
+
Sbjct: 483 AV 484
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y +I K K+ EA+ + + M G G ++ ++S + + + EA L+ M+
Sbjct: 482 YAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKME 541
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
E D+ ++N +L + G + + ++ + D TY+ L+ AG E
Sbjct: 542 ENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFE 601
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGAL 253
EA ++R M D G TY+ ++ A+
Sbjct: 602 EAARMMREMKDKGFEYDAITYSSILDAV 629
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 82 SLSVLSDLCRTLARLD---------------KGFPRKSAYDTLIGRLCKLKKIDEALRV- 125
S +VLS+L + L R K P S Y+++I L + + ++ V
Sbjct: 161 SPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVY 220
Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
++ EG IT+ ++S + R + A L + MK+ + P Y LL Y
Sbjct: 221 TEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFK 280
Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS---VL 242
G + + ++M+ TY L+ G +AGRV+EA+ + M+ DG + V
Sbjct: 281 VGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVF 340
Query: 243 YSTYAHVMGALLRL 256
+ +++G + R+
Sbjct: 341 LNNLMNILGKVGRV 354
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 11/200 (5%)
Query: 34 TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFIT-------NTENSLSVL 86
+ A +LV A G + + + + C T++T+N + E V
Sbjct: 161 SPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVY 220
Query: 87 SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
+++C FP Y LI KL + D A+R+ D M + + + +L
Sbjct: 221 TEMCNE----GDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLG 276
Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
+ + ++E+A L E MK SP + Y L+ G + G K M + L
Sbjct: 277 IYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTP 336
Query: 207 DARTYDALVLGACRAGRVEE 226
D + L+ + GRVEE
Sbjct: 337 DVVFLNNLMNILGKVGRVEE 356
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 7/206 (3%)
Query: 13 IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
+ +++L+ + G FP P A Y L+NA G + E L + + ++
Sbjct: 425 VEKALLLLEEMDEKG-FP--PCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRV 481
Query: 73 FNFITNTENSLSVLS---DLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
+ + LS DL + G P AY+ L+ + K I+EA ++ M
Sbjct: 482 YAVMIKHFGKCGKLSEAVDLFNEMKNQGSG-PDVYAYNALMSGMVKAGMINEANSLLRKM 540
Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
E G + + IL+ R A + E +K + PD YN LL + G
Sbjct: 541 EENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMF 600
Query: 190 TATSGVLKKMEEEKLGADARTYDALV 215
+ ++++M+++ DA TY +++
Sbjct: 601 EEAARMMREMKDKGFEYDAITYSSIL 626
>sp|Q9LMY5|PPR41_ARATH Putative pentatricopeptide repeat-containing protein At1g13630
OS=Arabidopsis thaliana GN=At1g13630 PE=2 SV=3
Length = 826
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 8/234 (3%)
Query: 70 ANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDI 128
A F+ + + V+ D+ LDKG P Y L+ C+L ID L ++
Sbjct: 341 AKGFHLLGMISGAWEVIRDM------LDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKD 394
Query: 129 MAEGGFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187
M GF L S I +LS L + R++EA L MK +SPDL AY+ ++ C G
Sbjct: 395 MLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLG 454
Query: 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247
+ +M ++++ ++RT+ AL+LG C+ G + EA LL ++ G+++ Y
Sbjct: 455 KFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYN 514
Query: 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301
V+ + G +A++ V I F SL + EA IL
Sbjct: 515 IVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 568
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 96/219 (43%), Gaps = 12/219 (5%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y+ +I K I+EAL + ++ E G S TF+ ++ + + + EA +++V+K
Sbjct: 513 YNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIK 572
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
++P + +Y L+ AY GN + + ++M+ E + TY + G CR + E
Sbjct: 573 LYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHE 632
Query: 226 EAFVLLRR------------MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273
+LR M +G TY ++ L R+ + + A F+ + R+
Sbjct: 633 NCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRN 692
Query: 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312
+ + + L L +A+ + + ++++ +
Sbjct: 693 LDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLS 731
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 91 RTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
RT D G P ++++++ CKL +D A + + G S + + +++ L
Sbjct: 253 RTSEWKDIG-PSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCL 311
Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
+ EA L M + V PD YN L + G ++ V++ M ++ L D T
Sbjct: 312 VGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVIT 371
Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDG 238
Y L+ G C+ G ++ VLL+ M+ G
Sbjct: 372 YTILLCGQCQLGNIDMGLVLLKDMLSRG 399
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
Query: 78 NTENSLSVLSDLCRTLARLDKGFPRKSAY--DTLIGRLCKLKKIDEALRVVDIMAEGGFG 135
N + L +L D+ L +GF S ++ LCK +IDEAL + + M G
Sbjct: 384 NIDMGLVLLKDM------LSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLS 437
Query: 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195
+ + ++ L + + + A L + M + R+ P+ + LL C KG L +
Sbjct: 438 PDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSL 497
Query: 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
L + D Y+ ++ G ++G +EEA L + +++ G + +T+ ++ +
Sbjct: 498 LDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCK 557
Query: 256 LGYYAQAVKFVMV 268
A+A K + V
Sbjct: 558 TQNIAEARKILDV 570
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 27/227 (11%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + +++LI CK + I EA +++D++ G S +++ ++ + L
Sbjct: 543 PSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDEL 602
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK------------MEEEKLGADA 208
MK + P Y+ + C + VL++ ME E + D
Sbjct: 603 RREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQ 662
Query: 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268
TY+ ++ CR + AFV L M +TY ++ +L GY +A F+
Sbjct: 663 ITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIY- 721
Query: 269 CGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315
SL + + L +F I K D +M KL
Sbjct: 722 --------------SLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKL 754
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 109/241 (45%), Gaps = 12/241 (4%)
Query: 18 LVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFI 76
L++ SF K E T +D L+ + R ++ Y+L K+ +D N + ++N +
Sbjct: 154 LLSNSFRKW-----ESTGLVWDMLLFLSSRLRMVDDSLYIL-KKMKDQNLNVSTQSYNSV 207
Query: 77 TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
+ D+ + + DK + Y T++ LC+ +K+++A+ + G
Sbjct: 208 LYHFRETDKMWDVYKEIK--DKN---EHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGP 262
Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
S ++F+ I+S + ++ A + + + P + ++N L+ C G++ +
Sbjct: 263 SVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELA 322
Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
M + + D+ TY+ L G G + A+ ++R M+D G S TY ++ +L
Sbjct: 323 SDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQL 382
Query: 257 G 257
G
Sbjct: 383 G 383
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + Y+T+I LC++K + A ++IM S+ T++ ++ L + +A
Sbjct: 660 PDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSF 719
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ ++E VS AY L+ A+C KG+ + ++ R Y A++ CR
Sbjct: 720 IYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCR 779
Query: 221 AGRVEEAFVLLRRMVDDGQS 240
V E+ M+ G S
Sbjct: 780 RHLVNESKFFFCLMLSQGIS 799
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Query: 96 LDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155
L +G+ ++ L R+ +K + LR D+ +EG IT++ I+ L R K +
Sbjct: 625 LCRGWKHENCNHVLRERI--FEKCKQGLR--DMESEG-IPPDQITYNTIIQYLCRVKHLS 679
Query: 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215
A+ +E+MK + YN L+ + C G + + ++E+ + Y L+
Sbjct: 680 GAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLI 739
Query: 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
C G E A L +++ G +V Y+ V+ L R
Sbjct: 740 KAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCR 779
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 1/168 (0%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
P + L+ LC+ + EA ++D + G L + ++ ++ + +EEA
Sbjct: 472 LPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALE 531
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
L +V+ E ++P + +N L+ YC N+ +L ++ L +Y L+
Sbjct: 532 LFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYA 591
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267
G + L R M +G TY+ + L R G+ + V+
Sbjct: 592 NCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCR-GWKHENCNHVL 638
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 72/138 (52%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P LI LCK +D A+R+ IMAE G +A+T+ ++ ++ +E ++ L
Sbjct: 669 PNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKL 728
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
E M+E +SP + +Y+ ++ C +G + + + + + KL D Y L+ G C+
Sbjct: 729 FEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCK 788
Query: 221 AGRVEEAFVLLRRMVDDG 238
GR+ EA +L M+ +G
Sbjct: 789 VGRLVEAALLYEHMLRNG 806
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+T+I C L+++DEA R+ +++ FG + +T ++ VL + M+ A +
Sbjct: 634 PDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRM 693
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+M E P+ Y L+ + ++ + + ++M+E+ + +Y ++ G C+
Sbjct: 694 FSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCK 753
Query: 221 AGRVEEAFVLLRRMVD 236
GRV+EA + + +D
Sbjct: 754 RGRVDEATNIFHQAID 769
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 86/210 (40%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P AY TLI K + ++ G L + F + V + + A +
Sbjct: 319 PDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVV 378
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M +SP++ Y L+ C G + G+ ++ + + TY +L+ G C+
Sbjct: 379 YKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCK 438
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G + F L M+ G Y ++ L + G A++F + G+ I+L+ +
Sbjct: 439 CGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVV 498
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLK 310
F SL L RF+EA + + M +K
Sbjct: 499 FNSLIDGWCRLNRFDEALKVFRLMGIYGIK 528
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
+++LI C+L + DEAL+V +M G TF ++ V R+EEA L M
Sbjct: 498 VFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRM 557
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
++ + PD AY L+ A+C T + M+ K+ AD + ++ + R+
Sbjct: 558 FKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRI 617
Query: 225 EEAFVLLRRMVD 236
E+A +++
Sbjct: 618 EDASKFFNNLIE 629
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 62/150 (41%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P AY TLI CK K L++ D+M + ++ +L + R+E+A
Sbjct: 564 PDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKF 623
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ E ++ PD+ YN ++ YC L + + ++ G + T L+ C+
Sbjct: 624 FNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCK 683
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
++ A + M + G TY +M
Sbjct: 684 NNDMDGAIRMFSIMAEKGSKPNAVTYGCLM 713
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 4/180 (2%)
Query: 133 GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192
G + +T+ ++ L + R+ EA+G+ + + + P + Y+ L+ +C GNL +
Sbjct: 386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSG 445
Query: 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS--TYAHVM 250
+ + M + D Y LV G + G + A +M+ GQS+ + + ++
Sbjct: 446 FALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKML--GQSIRLNVVVFNSLI 503
Query: 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
RL + +A+K + G IK D F ++ I R EA F+ M K L+
Sbjct: 504 DGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLE 563
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 64/150 (42%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y LI LC+ +I EA + + + G S +T+ ++ + + + L
Sbjct: 389 PNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL 448
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
E M ++ PD+ Y L+ +G + KM + + + +++L+ G CR
Sbjct: 449 YEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCR 508
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
R +EA + R M G +T+ VM
Sbjct: 509 LNRFDEALKVFRLMGIYGIKPDVATFTTVM 538
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 70/156 (44%)
Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
+ +I L K +I++A + + + EG +T++ ++ +R++EA + E++K
Sbjct: 605 NVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKV 664
Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
P+ L+ C ++ + M E+ +A TY L+ ++ +E
Sbjct: 665 TPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEG 724
Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+F L M + G S +Y+ ++ L + G +A
Sbjct: 725 SFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEA 760
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 53/138 (38%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y +LI CK + + + M + G+ + + ++ L++ M A
Sbjct: 424 PSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRF 483
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M + ++ +N L+ +C V + M + D T+ ++ +
Sbjct: 484 SVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIM 543
Query: 221 AGRVEEAFVLLRRMVDDG 238
GR+EEA L RM G
Sbjct: 544 EGRLEEALFLFFRMFKMG 561
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y L+ L K + A+R M L+ + F+ ++ R R +EA +
Sbjct: 459 PDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKV 518
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+M + PD+ + ++ +G L + +M + L DA Y L+ C+
Sbjct: 519 FRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCK 578
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 123/305 (40%), Gaps = 13/305 (4%)
Query: 15 QSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN 74
++V + + G PD T Y +VN D++ LLNK FN
Sbjct: 206 EAVALVDQMVQRGCQPDLVT---YGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFN 262
Query: 75 FITNT---ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMA 130
I ++ + V DL + KG P Y++LI LC + +A R++ M
Sbjct: 263 TIIDSLCKYRHVEVAVDLFTEMET--KGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320
Query: 131 EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190
E + +TF+ ++ + ++ EA L E M + + PD YN L+ +C L
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380
Query: 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250
+ K M + + +TY+ L+ G C+ RVE+ L R M G TY ++
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440
Query: 251 GALLRLG--YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308
+ G AQ V MV + D + L L + + A I K + K +
Sbjct: 441 QGFFQAGDCDSAQMVFKQMV--SNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSE 498
Query: 309 LKMGF 313
+++
Sbjct: 499 MELNI 503
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 2/240 (0%)
Query: 72 TFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
T++ N S LS LA++ K G+ P +L+ C K+I +A+ +VD M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
E G+ TF ++ L + EA L++ M + PDL Y ++ C +G++
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239
Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
+L KME ++ A+ ++ ++ C+ VE A L M G TY +
Sbjct: 240 DLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSL 299
Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
+ L G ++ A + + + I + F +L + EA + +EM +R +
Sbjct: 300 INCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSI 359
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
P Y+TLI CK K++++ + + M++ G + +T+ I+ + + A
Sbjct: 395 LPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQM 454
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ + M RV D+ Y+ LL C G L + K +++ ++ + Y+ ++ G C
Sbjct: 455 VFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMC 514
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYST 245
+AG+V EA+ L + V Y+T
Sbjct: 515 KAGKVGEAWDLFCSLSIKPDVVTYNT 540
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 3/202 (1%)
Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
+ L RL + K+D+A+ + M + S + F+ +LS + + + E L E M+
Sbjct: 52 EILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQT 111
Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
+ +S DL Y+ + +C + L+ VL KM + D T +L+ G C + R+ +
Sbjct: 112 LGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISD 171
Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
A L+ +MV+ G T+ ++ L ++AV V R + D +G++ +
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231
Query: 287 KLIGLERFNEANFILKEMNKRD 308
GL + + + L +NK +
Sbjct: 232 ---GLCKRGDIDLALNLLNKME 250
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 93/208 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + TLI L K EA+ +VD M + G +T+ +++ L + ++ A L
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNL 245
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M+ R+ ++ +N ++ + C ++ + +ME + + + TY++L+ C
Sbjct: 246 LNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCN 305
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
GR +A LL M++ + T+ ++ A + G +A K R I DT
Sbjct: 306 YGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTIT 365
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
+ L + R +EA + K M +D
Sbjct: 366 YNLLINGFCMHNRLDEAKQMFKFMVSKD 393
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/284 (18%), Positives = 110/284 (38%), Gaps = 20/284 (7%)
Query: 31 DEPTSAYYDDLVNAAGHERDLETV----RYLLNKRARDCCFNTANTFNFITNTENSLSVL 86
+ PT + +L + ER + R +L R D I ++++ +
Sbjct: 23 NPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSD-----------IIKVDDAVDLF 71
Query: 87 SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
D+ ++ + FP ++ L+ + K+ K + + + + M G T+ ++
Sbjct: 72 GDMVKS-----RPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126
Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
R ++ A ++ M ++ PD+ + LL YC ++ ++ +M E
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186
Query: 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
D T+ L+ G + EA L+ +MV G TY V+ L + G A+ +
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLL 246
Query: 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310
IK + +F ++ L A + EM + ++
Sbjct: 247 NKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIR 290
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ LI C ++DEA ++ M + T++ +++ + KR+E+ L
Sbjct: 361 PDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVEL 420
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M + + + Y ++ + G+ + V K+M ++ D TY L+ G C
Sbjct: 421 FREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCS 480
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G+++ A V+ + + + Y ++ + + G +A + + C IK D
Sbjct: 481 YGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEA--WDLFC-SLSIKPDVVT 537
Query: 281 FGSLGSKLIGLERFNEANFILKEMNK 306
+ ++ S L EA+ + ++M +
Sbjct: 538 YNTMISGLCSKRLLQEADDLFRKMKE 563
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
Y L+ LC K+D AL + + + L+ ++ ++ + + ++ EAW L
Sbjct: 470 TYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLF--- 526
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
+ + PD+ YN +++ C K L + +KM+E+ ++ TY+ L+ R
Sbjct: 527 CSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDR 586
Query: 225 EEAFVLLRRMVDDG 238
+ L++ M G
Sbjct: 587 AASAELIKEMRSSG 600
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y+T+I +CK K+ EA D+ +T++ ++S L + ++EA L MK
Sbjct: 506 YNTMIEGMCKAGKVGEAW---DLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMK 562
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
E P+ YN L+ A + A++ ++K+M DA T +LV GR++
Sbjct: 563 EDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTI-SLVTNMLHDGRLD 621
Query: 226 EAFV 229
++F+
Sbjct: 622 KSFL 625
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 11/244 (4%)
Query: 75 FITNTENSLSVLSDLCRTLA-----------RLDKGFPRKSAYDTLIGRLCKLKKIDEAL 123
F N N +L LCR L R + P +Y+T+I C+ K++++AL
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197
Query: 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183
+ + M G S +T+ ++ + +M+EA G ++ MK + + DL Y L+ +
Sbjct: 198 ELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGF 257
Query: 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243
C G L + ++ E A TY+ L+ G C+ G+++EA + M++ G
Sbjct: 258 CDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNV 317
Query: 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
TY ++ L +G +A++ + + +D + + + + +KL +A I++
Sbjct: 318 YTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVEL 377
Query: 304 MNKR 307
M KR
Sbjct: 378 MKKR 381
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y LI LC + K EAL+++++M E +A+T++ I++ L + + +A +
Sbjct: 315 PNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEI 374
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM--EEEKLGADARTYDALVLGA 218
+E+MK+ R PD YN LL C KG+L S +L M + D +Y+AL+ G
Sbjct: 375 VELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGL 434
Query: 219 CRAGRVEEAFVLLRRMVD 236
C+ R+ +A + +V+
Sbjct: 435 CKENRLHQALDIYDLLVE 452
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 85/201 (42%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
+ LI CK K+DEA+ + M G + + ++ ++ L + +
Sbjct: 215 WGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVL 274
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
E SP YN L+ +C G L S + + M E + + TY L+ G C G+ +
Sbjct: 275 ERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTK 334
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
EA LL M++ + TY ++ L + G A AV+ V + R + D + L
Sbjct: 335 EALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILL 394
Query: 286 SKLIGLERFNEANFILKEMNK 306
L +EA+ +L M K
Sbjct: 395 GGLCAKGDLDEASKLLYLMLK 415
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 90/203 (44%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
++ L+ LC+ + +A+ ++ M +++ ++ GK +E+A L MK
Sbjct: 145 HNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMK 204
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
S L + L+ A+C G + G LK+M+ L AD Y +L+ G C G ++
Sbjct: 205 GSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELD 264
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
L +++ G S TY ++ +LG +A + R ++ + + L
Sbjct: 265 RGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLI 324
Query: 286 SKLIGLERFNEANFILKEMNKRD 308
L G+ + EA +L M ++D
Sbjct: 325 DGLCGVGKTKEALQLLNLMIEKD 347
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+TLI CKL ++ EA + + M E G + T+ ++ L + +EA L
Sbjct: 280 PCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQL 339
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ +M E P+ YN ++ C G + +++ M++ + D TY+ L+ G C
Sbjct: 340 LNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCA 399
Query: 221 AGRVEEAFVLLRRMVDD 237
G ++EA LL M+ D
Sbjct: 400 KGDLDEASKLLYLMLKD 416
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 35/200 (17%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRG--KRMEEA 157
P +Y+ LI LCK ++ +AL + D++ E G G T + S L G + E
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481
Query: 158 W-------------------------GLMEVMK----EIRVS---PDLTAYNYLLTAYCF 185
W G++ V K ++RVS P + YN LL++ C
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541
Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
+G+L + ++M+ + D +++ ++ G+ +AG ++ A LL M G S T
Sbjct: 542 EGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFT 601
Query: 246 YAHVMGALLRLGYYAQAVKF 265
Y+ ++ L+LGY +A+ F
Sbjct: 602 YSKLINRFLKLGYLDEAISF 621
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%)
Query: 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174
+++K A V+ +M + GF + + +L L R +A L+ M+ + PD+
Sbjct: 119 QMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVF 178
Query: 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
+YN ++ +C L + +M+ T+ L+ C+AG+++EA L+ M
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM 238
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 130/286 (45%), Gaps = 13/286 (4%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNK------RARDCCFNTA-NTFNFITNTENSLS 84
EP + Y L++ +D + ++N+ A + +NT N + T +
Sbjct: 516 EPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKE 575
Query: 85 VLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
+L +L + +K + ++Y+++I K+ D A+ M+E G + +TF
Sbjct: 576 MLQNLIK-----EKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTS 630
Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
+++ + RM+ A + MK + + DL AY L+ +C K ++ + ++ E
Sbjct: 631 LINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELG 690
Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
L + Y++L+ G G+++ A L ++MV+DG S TY ++ LL+ G A
Sbjct: 691 LMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLAS 750
Query: 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
I D L L + L +F +A+ +L+EM K+D+
Sbjct: 751 DLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDV 796
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/185 (18%), Positives = 80/185 (43%), Gaps = 1/185 (0%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ ++ C++K +D A + M E G + T+ ++ + K + AW +
Sbjct: 482 PNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDV 541
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM-EEEKLGADARTYDALVLGAC 219
+ M + YN ++ C G + +L+ + +E++ +Y++++ G
Sbjct: 542 INQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFV 601
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
+ G + A R M ++G+S T+ ++ + A++ ++KLD
Sbjct: 602 KVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLP 661
Query: 280 LFGSL 284
+G+L
Sbjct: 662 AYGAL 666
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P S Y++LI L K+D A+ + M G T+ ++ L + + A L
Sbjct: 693 PNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDL 752
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ ++ + PD + L+ KG S +L++M+++ + + Y ++ G R
Sbjct: 753 YSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHR 812
Query: 221 AGRVEEAFVLLRRMVDDG 238
G + EAF L M++ G
Sbjct: 813 EGNLNEAFRLHDEMLEKG 830
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Query: 88 DLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146
DL R + R G P + Y ++I K ++EA+RV+D M G +S I +++
Sbjct: 295 DLLREM-RGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVN 353
Query: 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206
+G + +A L M+E ++PD ++ ++ +C + +M+ ++
Sbjct: 354 GYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAP 413
Query: 207 DARTYDALVLGACRAGRVEEAF 228
+ ++ G +A E A
Sbjct: 414 SSVLVHTMIQGCLKAESPEAAL 435
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 114 CKLKKIDEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
CK + AL ++ ++ + G S T+ ++ + MEEA +M+ M +
Sbjct: 285 CKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMS 344
Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
+ A L+ YC L + +MEEE L D + +V C+ +E+A
Sbjct: 345 VIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYM 404
Query: 233 RM 234
RM
Sbjct: 405 RM 406
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/165 (18%), Positives = 74/165 (44%), Gaps = 7/165 (4%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P T+I K + + AL + + E + I + + +++ A
Sbjct: 413 PSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIA-HGFMCNKIFLLFCKQGKVDAATSF 471
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+++M++ + P++ YN ++ A+C N+ + +M E+ L + TY L+ G +
Sbjct: 472 LKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFK 531
Query: 221 AGRVEEAFVLLRRMVD---DGQSVLYSTYAHVMGALLRLGYYAQA 262
+ A+ ++ +M + V+Y+T ++ L ++G ++A
Sbjct: 532 NKDEQNAWDVINQMNASNFEANEVIYNT---IINGLCKVGQTSKA 573
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 5/152 (3%)
Query: 98 KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
K P + ++ L + IDEA + + M G +T ++ R ++ EEA
Sbjct: 199 KVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEA 258
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG--ADARTYDALV 215
+ + PD ++ + A C +L +L++M KLG A TY +++
Sbjct: 259 VKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREM-RGKLGVPASQETYTSVI 317
Query: 216 LGACRAGRVEEAFVLLRRMVDDG--QSVLYST 245
+ + G +EEA ++ MV G SV+ +T
Sbjct: 318 VAFVKEGNMEEAVRVMDEMVGFGIPMSVIAAT 349
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%)
Query: 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184
+VD GF L+ F+ +L+ R KRM+ A +M + +V P + N +L++
Sbjct: 156 LVDSSKRFGFELTPRAFNYLLNAYIRNKRMDYAVDCFGLMVDRKVVPFVPYVNNVLSSLV 215
Query: 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
+ + KM + D T L+ + R + EEA + RR++ G
Sbjct: 216 RSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRG 269
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y T+I L K I+ A + + + G I +++ L++ + +A ++E MK
Sbjct: 733 YTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMK 792
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+ V+P++ Y+ ++ + +GNL + +M E+ + D ++ LV +GRVE
Sbjct: 793 KKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLV-----SGRVE 847
Query: 226 EA 227
+
Sbjct: 848 KP 849
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 76/153 (49%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
+Y+TLI CK K++++ +++ M++ G + +T++ ++ + +++A M
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
+SPD+ YN LL C G L + + M++ ++ D TY ++ G C+ G+V
Sbjct: 392 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
EEA+ L + G TY +M L G
Sbjct: 452 EEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 13/240 (5%)
Query: 84 SVLSDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131
+++ LC+T R++ F P Y L+ LC + +A R++ M +
Sbjct: 195 AIIDSLCKT-KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253
Query: 132 GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191
+ IT+ +L + ++ EA L E M + + PD+ Y+ L+ C +
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDE 313
Query: 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251
+ + M + AD +Y+ L+ G C+A RVE+ L R M G TY ++
Sbjct: 314 ANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 373
Query: 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
+ G +A +F I D + L L +A I ++M KR++ +
Sbjct: 374 GFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
++ +I C ++ AL ++ M + G+ +T +++ R R+ +A L++ M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
EI PD+ AYN ++ + C + K++E + + + TY ALV G C + R
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSL 284
+A LL M+ + TY+ ++ A ++ G +A + I D + SL
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301
Query: 285 GSKLIGLERFNEAN 298
+ L +R +EAN
Sbjct: 302 INGLCLHDRIDEAN 315
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 108/244 (44%), Gaps = 2/244 (0%)
Query: 68 NTANTFNFITNTENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRV 125
N TFN + N +S L ++ K G+ P + +L+ C+ ++ +A+ +
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177
Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
VD M E G+ + ++ I+ L + KR+ +A+ + ++ + P++ Y L+ C
Sbjct: 178 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 237
Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
+ + +L M ++K+ + TY AL+ + G+V EA L MV T
Sbjct: 238 SSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 297
Query: 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305
Y+ ++ L +A + + + D + +L + +R + + +EM+
Sbjct: 298 YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 357
Query: 306 KRDL 309
+R L
Sbjct: 358 QRGL 361
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 90/192 (46%)
Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
K+++A+ + M + S + F+ +LS + + K+ + L + M+ + + DL +N
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
++ +C ++ +L KM + D T +LV G CR RV +A L+ +MV+
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
G Y ++ +L + A F + I+ + + +L + L R+++A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244
Query: 298 NFILKEMNKRDL 309
+L +M K+ +
Sbjct: 245 ARLLSDMIKKKI 256
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 104/241 (43%), Gaps = 2/241 (0%)
Query: 72 TFNFITNTENSLSVLSDLCRTLARL--DKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIM 129
T+ + N + S SD R L+ + K P Y L+ K K+ EA + + M
Sbjct: 227 TYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 286
Query: 130 AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189
+T+ +++ L R++EA + ++M D+ +YN L+ +C +
Sbjct: 287 VRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRV 346
Query: 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249
+ ++M + L ++ TY+ L+ G +AG V++A +M G S TY +
Sbjct: 347 EDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNIL 406
Query: 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
+G L G +A+ R++ LD + ++ + + EA + ++ + L
Sbjct: 407 LGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL 466
Query: 310 K 310
K
Sbjct: 467 K 467
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 5/224 (2%)
Query: 81 NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140
+++ + SD+ ++ + FP ++ L+ + KLKK D + + M G T
Sbjct: 68 DAIDLFSDMVKS-----RPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYT 122
Query: 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200
F+ +++ ++ A ++ M ++ PD L+ +C + ++ ++ KM
Sbjct: 123 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 182
Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260
E D Y+A++ C+ RV +AF + + G TY ++ L ++
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242
Query: 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304
A + + + I + + +L + + EA + +EM
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 286
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 117/266 (43%), Gaps = 4/266 (1%)
Query: 19 VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN 78
V F KS F P Y+ ++++ + + + ++ + D T+N +
Sbjct: 206 VVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMF 265
Query: 79 TENSLSVLSDLCRTLARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL 136
L L R L + K GF P Y+ L+ L K AL +++ M E G
Sbjct: 266 ANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEP 325
Query: 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196
I F ++ L+R ++E M+ ++ +PD+ Y ++T Y G L +
Sbjct: 326 GVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMF 385
Query: 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256
K+M E+ + TY++++ G C AG+ +EA LL+ M G + + Y+ ++ L
Sbjct: 386 KEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNA 445
Query: 257 GYYAQAVKFV--MVCGGRDIKLDTEL 280
G +A + V MV G + L ++L
Sbjct: 446 GKVLEAHEVVKDMVEKGHYVHLISKL 471
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 4/260 (1%)
Query: 57 LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF---PRKSAYDTLIGRL 113
L+++ +D TA TFN + T + D+ + K F P K +Y+ ++ L
Sbjct: 174 LIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIK-SKTFNYRPYKHSYNAILHSL 232
Query: 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL 173
+K+ V + M E GF +T++ ++ R + + + L++ M + SPDL
Sbjct: 233 LGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDL 292
Query: 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233
YN LL A +L M E + + L+ G RAG++E +
Sbjct: 293 YTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDE 352
Query: 234 MVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293
V G + Y ++ + G +A + + + + S+ +
Sbjct: 353 TVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGK 412
Query: 294 FNEANFILKEMNKRDLKMGF 313
F EA +LKEM R F
Sbjct: 413 FKEACALLKEMESRGCNPNF 432
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +Y L+ CKL KIDEA V++ M+ G + + F+ ++S + R+ EA +
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 481
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M PD+ +N L++ C + +L+ M E + A+ TY+ L+ R
Sbjct: 482 FREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR 541
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
G ++EA L+ MV G + TY ++ L R G +A
Sbjct: 542 RGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKA 583
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P ++ LI CK +I EA+ + M G TF+ ++S L ++ A L
Sbjct: 457 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWL 516
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M V + YN L+ A+ +G + ++ +M + D TY++L+ G CR
Sbjct: 517 LRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCR 576
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265
AG V++A L +M+ DG + + ++ L R G +AV+F
Sbjct: 577 AGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEF 621
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 122/252 (48%), Gaps = 21/252 (8%)
Query: 13 IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT 72
IP++V + R + G PD T ++ L++ +++ +LL + T
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYT---FNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT 531
Query: 73 FNFITNT-------ENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRV 125
+N + N + + +++++ + LD+ Y++LI LC+ ++D+A +
Sbjct: 532 YNTLINAFLRRGEIKEARKLVNEMVFQGSPLDE-----ITYNSLIKGLCRAGEVDKARSL 586
Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV---SPDLTAYNYLLTA 182
+ M G S I+ + +++ L R +EEA +E KE+ + +PD+ +N L+
Sbjct: 587 FEKMLRDGHAPSNISCNILINGLCRSGMVEEA---VEFQKEMVLRGSTPDIVTFNSLING 643
Query: 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242
C G + + +K++ E + D T++ L+ C+ G V +A +LL ++DG
Sbjct: 644 LCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 703
Query: 243 YSTYAHVMGALL 254
+ T++ ++ +++
Sbjct: 704 HRTWSILLQSII 715
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 107/239 (44%), Gaps = 14/239 (5%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN-------TENSLS 84
+P + ++ L++A E + + + R C TFN + + +++L
Sbjct: 456 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALW 515
Query: 85 VLSDLCRTLARLDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143
+L D+ + +G + Y+TLI + +I EA ++V+ M G L IT++
Sbjct: 516 LLRDM------ISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNS 569
Query: 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203
++ L R +++A L E M +P + N L+ C G + K+M
Sbjct: 570 LIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG 629
Query: 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
D T+++L+ G CRAGR+E+ + R++ +G T+ +M L + G+ A
Sbjct: 630 STPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDA 688
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 110/242 (45%), Gaps = 8/242 (3%)
Query: 27 GAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN--TENSLS 84
G PD+ T Y + + G + + Y + K FNT F+T+ +++ +
Sbjct: 317 GFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK-PEIVIFNTL-IHGFVTHGRLDDAKA 374
Query: 85 VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144
VLSD+ + + P Y++LI K + AL V+ M G + ++ +
Sbjct: 375 VLSDMVTSYGIV----PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTIL 430
Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
+ + +++EA+ ++ M + P+ +N L++A+C + + + ++M +
Sbjct: 431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 490
Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264
D T+++L+ G C ++ A LLR M+ +G TY ++ A LR G +A K
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARK 550
Query: 265 FV 266
V
Sbjct: 551 LV 552
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 2/189 (1%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P +++LI LC++ +I AL ++ M G + +T++ +++ R ++EA L
Sbjct: 492 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKL 551
Query: 161 MEVMKEIRVSP-DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ M + SP D YN L+ C G + + +KM + + + L+ G C
Sbjct: 552 VNEMV-FQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLC 610
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
R+G VEEA + MV G + T+ ++ L R G + I DT
Sbjct: 611 RSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTV 670
Query: 280 LFGSLGSKL 288
F +L S L
Sbjct: 671 TFNTLMSWL 679
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 13/204 (6%)
Query: 52 ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLA------RLDKGFPRK-S 104
+T R +L R C T ++N + ++S C +A L + P
Sbjct: 164 QTTRLMLEMRNVYSCEPTFKSYNVVLEI-----LVSGNCHKVAANVFYDMLSRKIPPTLF 218
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
+ ++ C + +ID AL ++ M + G +++ + ++ L++ R+ EA L+E M
Sbjct: 219 TFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
+ PD +N ++ C + + ++ +M D TY L+ G C+ GRV
Sbjct: 279 FLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRV 338
Query: 225 EEAFVLLRRMVDDGQSVLYSTYAH 248
+ A L R + + V+++T H
Sbjct: 339 DAAKDLFYR-IPKPEIVIFNTLIH 361
>sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250,
mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2
SV=2
Length = 971
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 138/316 (43%), Gaps = 32/316 (10%)
Query: 2 SLLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPT--SAYYDDLVNAAGHERDLETVRYLLN 59
S+ R P+K L+ ++ GAFP T S Y V + +E + + N
Sbjct: 108 SITRDDPSKGLL----ILRDCLRNHGAFPSSLTFCSLIYR-FVEKGEMDNAIEVLEMMTN 162
Query: 60 KRARDCCFNTANTF-NFITNTENSLSVLSDLCRT----------LARLDKGF--PRKSAY 106
K N F NF+ + +V+S C+ + +D G P Y
Sbjct: 163 K-------NVNYPFDNFVCS-----AVISGFCKIGKPELALGFFESAVDSGVLVPNLVTY 210
Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166
TL+ LC+L K+DE +V + + GF + + + +G + +A M E
Sbjct: 211 TTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDREMVE 270
Query: 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226
++ D+ +Y+ L+ +GN+ G+L KM +E + + TY A++ G C+ G++EE
Sbjct: 271 KGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEE 330
Query: 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286
AFVL R++ G V Y ++ + R G +A + R I+ + ++ +
Sbjct: 331 AFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVIN 390
Query: 287 KLIGLERFNEANFILK 302
L R +EA+ + K
Sbjct: 391 GLCMAGRVSEADEVSK 406
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 6/216 (2%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTF--NFITNTENSLSVLSDLC 90
P Y LV+A ++ VR L+ +R D F F N+I +++ L
Sbjct: 205 PNLVTYTTLVSALCQLGKVDEVRDLV-RRLEDEGFEFDCVFYSNWIHGYFKGGALVDALM 263
Query: 91 RTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149
+ ++KG R +Y LI L K ++EAL ++ M + G + IT+ I+ L
Sbjct: 264 QDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLC 323
Query: 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209
+ ++EEA+ L + + + D Y L+ C KGNL +L ME+ +
Sbjct: 324 KMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSIL 383
Query: 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
TY+ ++ G C AGRV EA + + +V G + YST
Sbjct: 384 TYNTVINGLCMAGRVSEADEVSKGVV--GDVITYST 417
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 3/177 (1%)
Query: 61 RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKK 118
++R NT T+N + N L + R L+ P + Y LI LCK
Sbjct: 682 KSRGVTLNTI-TYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGL 740
Query: 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178
+A +++D M G + I ++ I+ + + E+A ++ RV+PD +
Sbjct: 741 FLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSS 800
Query: 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235
++ YC KG++ V + +++ + AD + L+ G C GR+EEA LLR M+
Sbjct: 801 MIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREML 857
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 6/177 (3%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+T+I LC ++ EA D +++G G IT+ +L + + ++ +
Sbjct: 380 PSILTYNTVINGLCMAGRVSEA----DEVSKGVVG-DVITYSTLLDSYIKVQNIDAVLEI 434
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
E ++ DL N LL A+ G + + M E L D TY ++ G C+
Sbjct: 435 RRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCK 494
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277
G++EEA + + S Y ++ AL + G A + ++ + + LD
Sbjct: 495 TGQIEEALEMFNELRKSSVSAAV-CYNRIIDALCKKGMLDTATEVLIELWEKGLYLD 550
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%)
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164
Y++LI LC+ + EALR+ D + G S +T+ ++ L + +A L++ M
Sbjct: 692 TYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSM 751
Query: 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224
+ P++ YN ++ YC G V+ + ++ DA T +++ G C+ G +
Sbjct: 752 VSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDM 811
Query: 225 EEAFVLLRRMVDDGQS 240
EEA + D S
Sbjct: 812 EEALSVFTEFKDKNIS 827
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y +I LCK + +AL + G L+ IT++ +++ L + + EA L + ++
Sbjct: 658 YTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLE 717
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
I + P Y L+ C +G +L M + L + Y+++V G C+ G+ E
Sbjct: 718 NIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTE 777
Query: 226 EAF-VLLRRMV 235
+A V+ R+M+
Sbjct: 778 DAMRVVSRKMM 788
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 101/266 (37%), Gaps = 6/266 (2%)
Query: 3 LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA 62
++ L K ++ + V + G + D TS ++A G ++ + + Y L +
Sbjct: 522 IIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLN 581
Query: 63 RDCCFNTANTFNFITNTENSLSVLSDLCRTLAR--LDKGFPRKSAYDTLIGRLCKLKKID 120
D C N + S ++ + R L FP + TL+ L+ +D
Sbjct: 582 SDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFP-STILKTLVD---NLRSLD 637
Query: 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180
L VV+ + I + I++ L + + +A L K V+ + YN L+
Sbjct: 638 AYLLVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLI 697
Query: 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240
C +G L + +E L TY L+ C+ G +A LL MV G
Sbjct: 698 NGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLV 757
Query: 241 VLYSTYAHVMGALLRLGYYAQAVKFV 266
Y ++ +LG A++ V
Sbjct: 758 PNIIIYNSIVDGYCKLGQTEDAMRVV 783
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 2/279 (0%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
P+ ++ L++A + + V L K R + T+N + N S +S
Sbjct: 83 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142
Query: 93 LARLDK-GF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150
L ++ K G+ P +L+ C K+I +A+ +VD M E G+ ITF ++ L
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART 210
+ EA L++ M + P+L Y ++ C +G++ +L KME K+ A+
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262
Query: 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270
Y ++ C+ ++A L M + G TY+ ++ L ++ A + +
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322
Query: 271 GRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309
R I + F +L + + EA + EM KR +
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSI 361
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
FP Y+TLI CK K+IDE + + M++ G + +T+ ++ + + + A
Sbjct: 397 FPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 456
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ + M V P++ YN LL C G L V + ++ K+ TY+ ++ G C
Sbjct: 457 VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 516
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+AG+VE+ + L + G Y ++ R G +A
Sbjct: 517 KAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEA 559
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 3/151 (1%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y +LI LC ++ +A R++ M E + +TF+ ++ + ++ EA L
Sbjct: 293 PNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKL 352
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M + + PD+ Y+ L+ +C L + + M + + TY+ L+ G C+
Sbjct: 353 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCK 412
Query: 221 AGRVEEAFVLLRRMVDD---GQSVLYSTYAH 248
A R++E L R M G +V Y+T H
Sbjct: 413 AKRIDEGVELFREMSQRGLVGNTVTYTTLIH 443
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 88/199 (44%)
Query: 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165
Y T+I LCK + D+AL + M G + IT+ ++S L +R +A L+ M
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
E +++P++ +N L+ A+ +G L + +M + + D TY +L+ G C R++
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
EA + M+ TY ++ + + V+ R + +T + +L
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442
Query: 286 SKLIGLERFNEANFILKEM 304
+ A + K+M
Sbjct: 443 HGFFQARDCDNAQMVFKQM 461
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 22/219 (10%)
Query: 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCR 91
+P Y L+N L+ +++ CF T+N ++++ C+
Sbjct: 362 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN---------TLINGFCK 412
Query: 92 TLARLDKGFP------------RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139
R+D+G Y TLI + + D A V M G + +
Sbjct: 413 A-KRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471
Query: 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199
T++ +L L + ++E+A + E ++ ++ P + YN ++ C G + + +
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531
Query: 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238
+ + D Y+ ++ G CR G EEA L R+M +DG
Sbjct: 532 SLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 7/220 (3%)
Query: 47 HERD-LETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL--DKGFPRK 103
HE D L + NK R ++ + + N E SD R L+ + K P
Sbjct: 275 HEDDALNLFTEMENKGVRPNVITYSSLISCLCNYER----WSDASRLLSDMIERKINPNV 330
Query: 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163
++ LI K K+ EA ++ D M + T+ +++ R++EA + E+
Sbjct: 331 VTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 390
Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
M P++ YN L+ +C + + ++M + L + TY L+ G +A
Sbjct: 391 MISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARD 450
Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263
+ A ++ ++MV DG TY ++ L + G +A+
Sbjct: 451 CDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 490
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%)
Query: 98 KGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157
+ P ++ L+ + K+KK D + + + M G + T++ +++ R ++ A
Sbjct: 80 RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 139
Query: 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217
L+ M ++ P + + LL YC ++ ++ +M E D T+ L+ G
Sbjct: 140 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 199
Query: 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
+ EA L+ RMV G TY V+ L + G
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 94/208 (45%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + TLI L K EA+ +VD M + G + +T+ +++ L + ++ A+ L
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL 247
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M+ ++ ++ Y+ ++ + C + + +ME + + + TY +L+ C
Sbjct: 248 LNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCN 307
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
R +A LL M++ + T+ ++ A ++ G +A K R I D
Sbjct: 308 YERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 367
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRD 308
+ SL + +R +EA + + M +D
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKD 395
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 70/149 (46%)
Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
K+D+A+ + M + S F+ +LS + + K+ + L E M+ + +S +L YN
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124
Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
L+ +C + ++ +L KM + T +L+ G C R+ +A L+ +MV+
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFV 266
G T+ ++ L ++AV V
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALV 213
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/204 (18%), Positives = 86/204 (42%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y +LI C ++DEA + ++M + +T++ +++ + KR++E L
Sbjct: 363 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVEL 422
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M + + + Y L+ + + V K+M + + + TY+ L+ G C+
Sbjct: 423 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 482
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
G++E+A V+ + TY ++ + + G + +K D +
Sbjct: 483 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVII 542
Query: 281 FGSLGSKLIGLERFNEANFILKEM 304
+ ++ S EA+ + ++M
Sbjct: 543 YNTMISGFCRKGLKEEADALFRKM 566
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD 212
++++A GL M + R P + +N LL+A + +KM+ + + TY+
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124
Query: 213 ALVLGACRAGRVEEAFVLLRRMVDDGQ-------SVLYSTYAH---------VMGALLRL 256
L+ CR ++ A LL +M+ G S L + Y H ++ ++ +
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 257 GYYAQAVKFVMVCGG 271
GY + F + G
Sbjct: 185 GYRPDTITFTTLIHG 199
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 15/208 (7%)
Query: 79 TENSLSVL-SDLCRTLARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRV 125
T SL+VL LCR +D G P Y TLI LC+ +IDEA ++
Sbjct: 155 TVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKL 214
Query: 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185
M E + +T+ +++ L K ++EA +E MK + P++ Y+ L+ C
Sbjct: 215 FTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCK 274
Query: 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
G + + M + TY L+ G C+ +++EA LL RM G
Sbjct: 275 DGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGL 334
Query: 246 YAHVMGALLRLGYYAQAVKFV--MVCGG 271
Y V+ + + +A F+ M+ GG
Sbjct: 335 YGKVISGFCAISKFREAANFLDEMILGG 362
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 101 PRKSAYDTLIGRLCKLK-KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
P ++ + LI LC+ +D L++ M + G + T+ ++S L R R++EA
Sbjct: 154 PTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKK 213
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
L M E +P + Y L+ C N+ L++M+ + + + TY +L+ G C
Sbjct: 214 LFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLC 273
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE 279
+ GR +A L M+ G TY ++ L + +AV+ + + +K D
Sbjct: 274 KDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAG 333
Query: 280 LFGSLGSKLIGLERFNEANFILKEM 304
L+G + S + +F EA L EM
Sbjct: 334 LYGKVISGFCAISKFREAANFLDEM 358
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 127/325 (39%), Gaps = 29/325 (8%)
Query: 9 TKFLIPQSVL----VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD 64
+K + P V+ + KS A D T+ Y A G+ D + Y++ +
Sbjct: 11 SKNITPSQVIKLMRAEKDVEKSMAVFDSATAEY------ANGYVHDQSSFGYMVLRLVSA 64
Query: 65 CCFNTANTFNFITNTEN---SLSVLSDLCRTLARLDKGF---------------PRKSAY 106
F A EN S +L +CR R+ + F P + AY
Sbjct: 65 NKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAY 124
Query: 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK-RMEEAWGLMEVMK 165
T++ L + +++ A + M E G + + + ++ L R ++ + M
Sbjct: 125 VTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMP 184
Query: 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225
+ PD Y L++ C G + + +M E+ TY +L+ G C + V+
Sbjct: 185 KRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVD 244
Query: 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285
EA L M G TY+ +M L + G QA++ + R + + + +L
Sbjct: 245 EAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304
Query: 286 SKLIGLERFNEANFILKEMNKRDLK 310
+ L ++ EA +L MN + LK
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLK 329
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 16/234 (6%)
Query: 33 PTSAYYDDLVNA-AGHERDLETVRYLLNKRARDC---CFNTANTFNFITNTENSLSVLSD 88
PT Y L+N G + E +RYL +++ F ++ + + SL +
Sbjct: 225 PTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMEL 284
Query: 89 LCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
+AR + P Y TLI LCK +KI EA+ ++D M G A + ++S
Sbjct: 285 FEMMMARGCR--PNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGF 342
Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNY-------LLTAYCFKGNLTATSGVLK-KME 200
+ EA ++ M ++P+ +N ++ C N + + L M
Sbjct: 343 CAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLC--ANYPSRAFTLYLSMR 400
Query: 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254
+ + T ++LV C+ G ++A L+ +V DG T+ ++G L
Sbjct: 401 SRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTL 454
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%)
Query: 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159
+P + Y TLI CK K++++ +++ M++ G + IT+ ++ R + A
Sbjct: 325 YPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQE 384
Query: 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219
+ M R PD+ YN LL C G + + + M + ++ + TY ++ G C
Sbjct: 385 VFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMC 444
Query: 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262
+ G+VE+AF L + G TY ++ R G +A
Sbjct: 445 KLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEA 487
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 24/208 (11%)
Query: 46 GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKS 104
G E DL T LLN C +N E+++++ + L GF P
Sbjct: 148 GFEPDLVTFTSLLNGY---CHWN---------RIEDAIALFDQI------LGMGFKPNVV 189
Query: 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR-GKRMEEAWGLMEV 163
Y TLI LCK + ++ A+ + + M G + +T++ +++ L G+ + AW L ++
Sbjct: 190 TYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDM 249
Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
MK R+ P++ + L+ A+ G L + M + + D TY +L+ G C G
Sbjct: 250 MKR-RIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGL 308
Query: 224 VEEA---FVLLRRMVDDGQSVLYSTYAH 248
++EA F L+ R V+Y+T H
Sbjct: 309 LDEARQMFYLMERNGCYPNEVIYTTLIH 336
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%)
Query: 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177
+ ++AL + M S I F +LSV+ + R + L E M+ + + P L N
Sbjct: 63 QFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN 122
Query: 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237
++ C S L KM + D T+ +L+ G C R+E+A L +++
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM 182
Query: 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297
G TY ++ L + + AV+ G + + + +L + L + R+ +A
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242
Query: 298 NFILKEMNKRDLK 310
++L++M KR ++
Sbjct: 243 AWLLRDMMKRRIE 255
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ L+ LC++ + +A ++ M + + ITF ++ + ++ EA L
Sbjct: 221 PNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKEL 280
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
VM ++ V PD+ Y L+ C G L + ME + Y L+ G C+
Sbjct: 281 YNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCK 340
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280
+ RVE+ + M G TY ++ +G A + R D
Sbjct: 341 SKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRT 400
Query: 281 FGSLGSKLIGLERFNEANFILKEMNKRDLKM 311
+ L L + +A I + M KR++ +
Sbjct: 401 YNVLLDGLCCNGKVEKALMIFEYMRKREMDI 431
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 2/179 (1%)
Query: 129 MAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188
M + GF +TF +L+ R+E+A L + + + P++ Y L+ C +
Sbjct: 144 MMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRH 203
Query: 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAH 248
L + +M + TY+ALV G C GR +A LLR M+ T+
Sbjct: 204 LNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTA 263
Query: 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN--FILKEMN 305
++ A +++G +A + V + D +GSL + L +EA F L E N
Sbjct: 264 LIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERN 322
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 56/111 (50%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y+ L+ LC K+++AL + + M + ++ +T+ I+ + + ++E+A+ L
Sbjct: 396 PDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDL 455
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211
+ + P++ Y +++ +C +G + + KKM+E+ + Y
Sbjct: 456 FCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 71/146 (48%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P + YD LI LCK+ K+DEA V M+E GF + T+ ++ + KR + A +
Sbjct: 672 PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 731
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+ M E +P++ Y ++ C G +++ MEE+ + TY A++ G
Sbjct: 732 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGM 791
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTY 246
G++E LL RM G + Y TY
Sbjct: 792 IGKIETCLELLERMGSKGVAPNYVTY 817
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 80 ENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA 138
E + SV+ ++ + +GF P S Y ++ LC K++ A + + M GG
Sbjct: 465 EKAFSVIREM------IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADV 518
Query: 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198
T+ ++ + +E+A M+E+ +P++ Y L+ AY ++ + + +
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578
Query: 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234
M E + TY AL+ G C+AG+VE+A + RM
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 614
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 2/206 (0%)
Query: 31 DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90
+ P Y L++ +E R LL+ + + C ++ + + + L +
Sbjct: 635 ERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 694
Query: 91 RTLARL-DKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148
+ + GFP Y +LI R K+K+ D A +V+ M E + + + ++ L
Sbjct: 695 EVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGL 754
Query: 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208
+ + +EA+ LM++M+E P++ Y ++ + G + +L++M + + +
Sbjct: 755 CKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNY 814
Query: 209 RTYDALVLGACRAGRVEEAFVLLRRM 234
TY L+ C+ G ++ A LL M
Sbjct: 815 VTYRVLIDHCCKNGALDVAHNLLEEM 840
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172
LC K ++A V+ M GF T+ +L+ L +ME A+ L E MK + D
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517
Query: 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232
+ Y ++ ++C G + +M E + TY AL+ +A +V A L
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577
Query: 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK-FVMVCGGRDIKLDTELF 281
M+ +G TY+ ++ + G +A + F +CG +D+ D +++
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVP-DVDMY 626
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y L+ CK +++EA +++D M+ G + I + ++ L + +++EA +
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
M E L Y+ L+ Y S VL KM E + Y ++ G C+
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257
G+ +EA+ L++ M + G TY ++ +G
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIG 793
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 46/301 (15%)
Query: 34 TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTL 93
S++ L +A +E+ +R ++ + FI +T VL+ LC
Sbjct: 451 VSSFTRCLCSAGKYEKAFSVIREMIGQ-------------GFIPDTSTYSKVLNYLCNA- 496
Query: 94 ARLDKGF------------PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF 141
++++ F Y ++ CK I++A + + M E G + +T+
Sbjct: 497 SKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 556
Query: 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201
++ + K++ A L E M P++ Y+ L+ +C G + + ++M
Sbjct: 557 TALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCG 616
Query: 202 EKLGADAR----------------TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST 245
K D TY AL+ G C++ RVEEA LL M +G
Sbjct: 617 SKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIV 676
Query: 246 YAHVMGALLRLGYY--AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303
Y ++ L ++G AQ VK M G L T + SL + ++R + A+ +L +
Sbjct: 677 YDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT--YSSLIDRYFKVKRQDLASKVLSK 734
Query: 304 M 304
M
Sbjct: 735 M 735
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 8/231 (3%)
Query: 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRT 92
P Y L+ +++ L + +LN + C+ + FN + + + S +
Sbjct: 335 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 394
Query: 93 LARLDK--GFPRKSAYDTLIGRLCKLKK------IDEALRVVDIMAEGGFGLSAITFHPI 144
L ++ K P Y+ LIG +C K +D A + M G L+ I
Sbjct: 395 LKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSF 454
Query: 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204
L + E+A+ ++ M PD + Y+ +L C + + ++M+ L
Sbjct: 455 TRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGL 514
Query: 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
AD TY +V C+AG +E+A M + G + TY ++ A L+
Sbjct: 515 VADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y +I LCK+ K DEA +++ +M E G + +T+ ++ ++E L
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220
+E M V+P+ Y L+ C G L +L++M++ Y ++ G +
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK 861
Query: 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255
E+ LL + D + S Y ++ L++
Sbjct: 862 --EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIK 894
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 41/203 (20%)
Query: 92 TLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151
TL + P Y LI LC+ +EA+ ++ M + +T+ +L
Sbjct: 291 TLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK 350
Query: 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM------------ 199
K++ ++ +M P +N L+ AYC G+ + +LKKM
Sbjct: 351 KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVY 410
Query: 200 ---------EEEKLGAD-----ARTYDALVLGA---------------CRAGRVEEAFVL 230
+++ L D + Y ++ C AG+ E+AF +
Sbjct: 411 NILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSV 470
Query: 231 LRRMVDDGQSVLYSTYAHVMGAL 253
+R M+ G STY+ V+ L
Sbjct: 471 IREMIGQGFIPDTSTYSKVLNYL 493
Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 9/176 (5%)
Query: 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160
P Y LI CK +D A +++ M + + + ++ K E+ GL
Sbjct: 812 PNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGL 869
Query: 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME--EEKLGADARTYDALVLGA 218
++ + + +P L+ Y L+ L +L+++ L + TY++L+
Sbjct: 870 LDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESL 929
Query: 219 CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV-----MVC 269
C A +VE AF L M G ++ ++ L R ++A+ + MVC
Sbjct: 930 CLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMVC 985
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 8/132 (6%)
Query: 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223
+K+ R P + YN L+ A+ L + S + ++M L D T C+ G+
Sbjct: 226 LKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGK 285
Query: 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV-----MVCGGRDIKLDT 278
EA L+ +V Y+ ++ L + +A+ F+ C + T
Sbjct: 286 WREALTLVETENFVPDTVFYTK---LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYST 342
Query: 279 ELFGSLGSKLIG 290
L G L K +G
Sbjct: 343 LLCGCLNKKQLG 354
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,565,616
Number of Sequences: 539616
Number of extensions: 4698693
Number of successful extensions: 14145
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 11189
Number of HSP's gapped (non-prelim): 1938
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)