Query 038109
Match_columns 324
No_of_seqs 437 out of 1470
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 07:41:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.3E-54 5E-59 397.9 37.4 285 31-315 503-791 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.3E-54 7.1E-59 396.9 37.4 312 3-317 443-758 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.4E-49 3E-54 362.4 29.2 305 3-315 93-428 (697)
4 PLN03081 pentatricopeptide (PP 100.0 3.6E-49 7.7E-54 359.7 29.7 274 31-313 220-494 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 5.3E-49 1.1E-53 366.4 28.8 310 3-321 158-467 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.6E-48 5.6E-53 361.8 30.4 297 3-304 259-651 (857)
7 PRK11788 tetratricopeptide rep 99.9 2E-22 4.3E-27 173.1 31.0 297 9-314 47-354 (389)
8 PRK11788 tetratricopeptide rep 99.9 4.6E-20 1E-24 158.4 30.7 259 44-307 44-311 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 4.9E-19 1.1E-23 167.7 34.9 290 9-310 579-869 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 4.5E-19 9.7E-24 167.9 33.4 287 8-306 612-899 (899)
11 PRK15174 Vi polysaccharide exp 99.8 1.3E-16 2.8E-21 144.4 35.0 288 10-307 89-381 (656)
12 PRK15174 Vi polysaccharide exp 99.8 9.5E-17 2.1E-21 145.2 32.0 295 4-308 49-348 (656)
13 TIGR00990 3a0801s09 mitochondr 99.7 9.8E-15 2.1E-19 132.3 29.8 257 48-308 307-572 (615)
14 PF13429 TPR_15: Tetratricopep 99.7 2.9E-17 6.4E-22 134.3 12.0 260 40-305 13-275 (280)
15 TIGR00990 3a0801s09 mitochondr 99.7 8.8E-14 1.9E-18 126.1 34.1 289 9-307 139-496 (615)
16 KOG4422 Uncharacterized conser 99.7 1.5E-13 3.2E-18 111.6 27.7 244 66-313 203-468 (625)
17 PRK10747 putative protoheme IX 99.7 3.3E-13 7.1E-18 115.5 30.7 282 10-305 97-388 (398)
18 PRK11447 cellulose synthase su 99.7 6.6E-13 1.4E-17 128.2 35.1 186 9-202 281-524 (1157)
19 PRK11447 cellulose synthase su 99.7 5.8E-13 1.2E-17 128.6 33.8 289 9-305 363-738 (1157)
20 KOG4626 O-linked N-acetylgluco 99.7 3.8E-14 8.3E-19 119.9 22.1 262 38-307 221-485 (966)
21 TIGR00540 hemY_coli hemY prote 99.7 4.1E-13 8.8E-18 115.5 28.8 285 10-304 97-396 (409)
22 KOG4422 Uncharacterized conser 99.7 2.7E-13 5.8E-18 110.1 24.6 272 32-307 204-551 (625)
23 PRK10049 pgaA outer membrane p 99.6 1.6E-12 3.6E-17 120.2 32.7 294 7-308 59-423 (765)
24 PRK09782 bacteriophage N4 rece 99.6 3.1E-12 6.8E-17 119.3 33.3 265 34-307 476-740 (987)
25 PF13429 TPR_15: Tetratricopep 99.6 2.8E-15 6.1E-20 122.6 11.8 258 6-271 17-276 (280)
26 PRK09782 bacteriophage N4 rece 99.6 4.5E-12 9.7E-17 118.3 33.2 290 10-308 389-707 (987)
27 KOG4626 O-linked N-acetylgluco 99.6 4.5E-13 9.7E-18 113.6 22.9 290 6-308 125-452 (966)
28 PRK10049 pgaA outer membrane p 99.6 1.3E-11 2.8E-16 114.4 33.5 290 10-307 28-388 (765)
29 PRK14574 hmsH outer membrane p 99.6 3.6E-11 7.8E-16 110.2 34.4 90 42-132 109-198 (822)
30 PRK10747 putative protoheme IX 99.6 1.5E-11 3.3E-16 105.4 28.3 253 47-308 96-358 (398)
31 COG3071 HemY Uncharacterized e 99.6 3.6E-11 7.7E-16 97.1 27.6 284 10-306 97-389 (400)
32 KOG1126 DNA-binding cell divis 99.5 5E-12 1.1E-16 108.1 22.7 267 36-313 354-626 (638)
33 COG2956 Predicted N-acetylgluc 99.5 2.1E-11 4.6E-16 95.8 24.3 262 40-309 74-349 (389)
34 KOG4318 Bicoid mRNA stability 99.5 5.8E-13 1.3E-17 116.9 17.3 91 21-121 11-101 (1088)
35 TIGR00540 hemY_coli hemY prote 99.5 3E-11 6.4E-16 104.1 27.6 272 39-316 86-373 (409)
36 PF13041 PPR_2: PPR repeat fam 99.5 3.5E-14 7.5E-19 83.1 6.5 48 206-253 1-48 (50)
37 PF13041 PPR_2: PPR repeat fam 99.5 3.5E-14 7.6E-19 83.1 6.5 50 171-220 1-50 (50)
38 KOG1126 DNA-binding cell divis 99.5 3E-12 6.5E-17 109.4 20.1 256 50-319 334-596 (638)
39 COG2956 Predicted N-acetylgluc 99.5 1.6E-10 3.5E-15 90.9 27.7 256 46-306 46-310 (389)
40 PRK14574 hmsH outer membrane p 99.5 1.6E-10 3.6E-15 105.9 31.5 288 9-306 46-395 (822)
41 TIGR02521 type_IV_pilW type IV 99.5 3.2E-11 6.8E-16 95.8 23.9 197 105-305 33-230 (234)
42 TIGR02521 type_IV_pilW type IV 99.5 8.8E-11 1.9E-15 93.2 25.1 201 68-271 29-231 (234)
43 PRK12370 invasion protein regu 99.5 6.4E-11 1.4E-15 105.8 26.4 265 33-308 254-536 (553)
44 PRK12370 invasion protein regu 99.5 1.5E-10 3.3E-15 103.5 27.8 218 83-306 274-501 (553)
45 KOG1155 Anaphase-promoting com 99.5 9.2E-11 2E-15 96.5 23.7 254 44-306 236-494 (559)
46 KOG1155 Anaphase-promoting com 99.4 4.2E-10 9.1E-15 92.7 25.7 272 30-307 257-536 (559)
47 KOG1129 TPR repeat-containing 99.4 1.9E-11 4.1E-16 96.3 17.3 230 74-307 227-458 (478)
48 KOG1129 TPR repeat-containing 99.4 5.5E-11 1.2E-15 93.7 18.9 229 39-272 227-458 (478)
49 PF12569 NARP1: NMDA receptor- 99.4 1.5E-09 3.2E-14 94.5 28.0 288 7-305 14-332 (517)
50 KOG2003 TPR repeat-containing 99.3 4.6E-09 1E-13 86.7 24.8 278 7-293 429-709 (840)
51 KOG2076 RNA polymerase III tra 99.3 1.8E-08 4E-13 89.5 29.5 187 10-201 152-344 (895)
52 PF12569 NARP1: NMDA receptor- 99.3 5.3E-09 1.1E-13 91.1 26.0 265 44-317 13-301 (517)
53 KOG1840 Kinesin light chain [C 99.3 3.9E-09 8.4E-14 91.0 24.1 235 71-305 200-477 (508)
54 KOG1840 Kinesin light chain [C 99.3 4.2E-09 9.2E-14 90.8 24.1 235 36-270 200-477 (508)
55 COG3071 HemY Uncharacterized e 99.3 3.1E-08 6.6E-13 80.5 27.1 255 47-309 96-359 (400)
56 KOG1173 Anaphase-promoting com 99.3 1.4E-08 3E-13 85.9 25.0 275 31-315 240-524 (611)
57 KOG2076 RNA polymerase III tra 99.2 2.9E-08 6.3E-13 88.3 27.3 271 33-306 205-511 (895)
58 KOG2002 TPR-containing nuclear 99.2 5.3E-09 1.1E-13 93.6 22.8 273 31-306 448-744 (1018)
59 KOG0495 HAT repeat protein [RN 99.2 7.5E-08 1.6E-12 83.1 27.1 264 38-306 587-879 (913)
60 PRK11189 lipoprotein NlpI; Pro 99.2 1.3E-07 2.7E-12 77.9 27.6 126 105-234 66-191 (296)
61 COG3063 PilF Tfp pilus assembl 99.2 3.1E-08 6.7E-13 74.7 21.4 194 75-271 40-235 (250)
62 PRK11189 lipoprotein NlpI; Pro 99.2 4.3E-08 9.3E-13 80.7 24.4 228 47-283 38-275 (296)
63 KOG0495 HAT repeat protein [RN 99.2 1.9E-07 4.1E-12 80.7 27.9 254 11-273 598-881 (913)
64 PF04733 Coatomer_E: Coatomer 99.2 4.1E-09 8.8E-14 85.7 17.2 250 43-307 9-265 (290)
65 KOG2003 TPR repeat-containing 99.1 3.2E-08 7E-13 81.8 20.6 258 44-307 428-689 (840)
66 cd05804 StaR_like StaR_like; a 99.1 5.7E-07 1.2E-11 76.5 29.3 263 44-308 52-337 (355)
67 KOG1173 Anaphase-promoting com 99.1 1.4E-07 3.1E-12 80.0 23.8 269 11-289 258-533 (611)
68 KOG1915 Cell cycle control pro 99.1 1.2E-06 2.5E-11 73.2 28.6 281 11-303 155-496 (677)
69 COG3063 PilF Tfp pilus assembl 99.1 2.2E-07 4.8E-12 70.3 21.9 197 105-305 37-234 (250)
70 KOG0547 Translocase of outer m 99.1 6.3E-08 1.4E-12 80.7 20.1 194 38-235 363-564 (606)
71 KOG0547 Translocase of outer m 99.1 5.2E-08 1.1E-12 81.2 19.4 224 77-305 333-564 (606)
72 KOG2002 TPR-containing nuclear 99.0 1.5E-06 3.2E-11 78.5 28.3 198 69-269 269-478 (1018)
73 PF12854 PPR_1: PPR repeat 99.0 5E-10 1.1E-14 58.9 4.0 32 203-234 2-33 (34)
74 PF12854 PPR_1: PPR repeat 99.0 5.7E-10 1.2E-14 58.7 3.8 33 168-200 2-34 (34)
75 cd05804 StaR_like StaR_like; a 99.0 1.8E-06 3.9E-11 73.4 27.0 266 37-306 8-292 (355)
76 KOG4318 Bicoid mRNA stability 99.0 4.7E-08 1E-12 86.9 16.9 82 171-255 202-283 (1088)
77 KOG1174 Anaphase-promoting com 99.0 7.1E-06 1.5E-10 67.5 27.9 256 48-310 209-503 (564)
78 KOG1070 rRNA processing protei 99.0 6.4E-07 1.4E-11 83.5 23.7 214 92-312 1446-1668(1710)
79 KOG1070 rRNA processing protei 98.9 1E-06 2.2E-11 82.3 24.0 222 36-260 1459-1688(1710)
80 KOG4340 Uncharacterized conser 98.9 1.4E-06 3.1E-11 68.5 21.3 263 37-303 12-335 (459)
81 PF04733 Coatomer_E: Coatomer 98.9 1.8E-07 3.8E-12 76.2 15.9 224 34-272 34-265 (290)
82 KOG1125 TPR repeat-containing 98.8 4.2E-06 9.1E-11 71.5 22.1 249 45-300 295-564 (579)
83 PLN02789 farnesyltranstransfer 98.8 1.5E-05 3.3E-10 65.9 24.6 210 40-254 42-266 (320)
84 KOG1915 Cell cycle control pro 98.8 4.2E-05 9.1E-10 64.2 26.7 126 34-163 106-232 (677)
85 PLN02789 farnesyltranstransfer 98.8 2.5E-05 5.4E-10 64.6 25.4 235 48-305 33-300 (320)
86 KOG1128 Uncharacterized conser 98.8 1E-06 2.2E-11 77.2 17.4 215 72-306 400-615 (777)
87 TIGR03302 OM_YfiO outer membra 98.7 6.8E-06 1.5E-10 65.5 20.4 58 249-306 172-231 (235)
88 TIGR03302 OM_YfiO outer membra 98.7 2.9E-06 6.4E-11 67.6 17.9 182 71-272 34-232 (235)
89 PRK14720 transcript cleavage f 98.7 3.2E-05 6.9E-10 71.5 25.3 233 33-289 29-268 (906)
90 KOG1156 N-terminal acetyltrans 98.7 0.00021 4.6E-09 62.3 28.2 289 11-309 157-470 (700)
91 KOG2047 mRNA splicing factor [ 98.7 0.0001 2.2E-09 64.2 25.9 202 106-312 390-619 (835)
92 PRK15179 Vi polysaccharide bio 98.6 5.2E-05 1.1E-09 69.2 25.3 191 32-237 25-217 (694)
93 KOG3081 Vesicle coat complex C 98.6 4.4E-05 9.5E-10 59.4 20.9 247 43-305 16-269 (299)
94 KOG1174 Anaphase-promoting com 98.6 0.00016 3.4E-09 59.9 24.8 236 31-274 228-502 (564)
95 COG5010 TadD Flp pilus assembl 98.6 1.6E-05 3.4E-10 61.6 18.1 158 107-268 70-227 (257)
96 KOG1128 Uncharacterized conser 98.6 5E-06 1.1E-10 73.0 17.1 212 41-271 404-615 (777)
97 COG5010 TadD Flp pilus assembl 98.6 3.5E-05 7.6E-10 59.8 19.8 152 78-232 74-226 (257)
98 PRK10370 formate-dependent nit 98.6 3E-05 6.6E-10 59.7 19.6 119 83-203 52-174 (198)
99 PRK04841 transcriptional regul 98.6 9.1E-05 2E-09 71.2 27.3 298 10-307 422-760 (903)
100 PRK10370 formate-dependent nit 98.6 5E-05 1.1E-09 58.5 20.2 120 151-273 52-174 (198)
101 KOG4340 Uncharacterized conser 98.6 4.9E-05 1.1E-09 60.1 19.9 289 3-302 16-370 (459)
102 KOG1156 N-terminal acetyltrans 98.5 0.00047 1E-08 60.3 27.3 273 31-309 71-436 (700)
103 KOG1125 TPR repeat-containing 98.5 1.2E-05 2.6E-10 68.8 17.3 221 79-305 294-525 (579)
104 KOG1914 mRNA cleavage and poly 98.5 0.00045 9.6E-09 59.2 26.1 101 209-311 367-468 (656)
105 KOG3081 Vesicle coat complex C 98.5 0.00014 3.1E-09 56.6 21.2 229 77-319 15-248 (299)
106 PRK15179 Vi polysaccharide bio 98.5 1.9E-05 4.2E-10 71.9 19.4 135 66-202 82-217 (694)
107 TIGR00756 PPR pentatricopeptid 98.5 2.4E-07 5.1E-12 49.4 4.4 33 210-242 2-34 (35)
108 PRK15359 type III secretion sy 98.5 1.5E-05 3.3E-10 58.0 15.1 90 110-201 31-120 (144)
109 TIGR00756 PPR pentatricopeptid 98.5 2.6E-07 5.6E-12 49.2 4.2 33 105-137 2-34 (35)
110 PRK14720 transcript cleavage f 98.5 6.2E-05 1.3E-09 69.6 21.5 228 70-320 31-268 (906)
111 PF13812 PPR_3: Pentatricopept 98.5 2.8E-07 6E-12 48.8 4.0 31 175-205 3-33 (34)
112 PRK04841 transcriptional regul 98.5 0.00041 9E-09 66.7 28.2 267 40-306 414-719 (903)
113 KOG0548 Molecular co-chaperone 98.5 0.00057 1.2E-08 58.5 25.2 130 176-307 260-421 (539)
114 KOG2047 mRNA splicing factor [ 98.5 0.00082 1.8E-08 58.9 27.3 288 14-313 155-512 (835)
115 COG4783 Putative Zn-dependent 98.5 0.00064 1.4E-08 57.6 26.8 200 83-306 250-453 (484)
116 KOG2053 Mitochondrial inherita 98.4 0.00041 8.8E-09 62.8 24.8 226 81-311 20-259 (932)
117 PRK15359 type III secretion sy 98.4 1.8E-05 4E-10 57.6 13.9 93 178-272 29-121 (144)
118 PF13812 PPR_3: Pentatricopept 98.4 5.5E-07 1.2E-11 47.6 4.4 33 209-241 2-34 (34)
119 KOG3060 Uncharacterized conser 98.4 0.00035 7.5E-09 54.1 20.6 187 48-237 25-220 (289)
120 PF10037 MRP-S27: Mitochondria 98.4 8.4E-06 1.8E-10 69.2 13.1 120 102-221 65-186 (429)
121 PF09976 TPR_21: Tetratricopep 98.4 4.5E-05 9.8E-10 55.7 15.3 127 174-303 13-143 (145)
122 PF08579 RPM2: Mitochondrial r 98.4 8.6E-06 1.9E-10 54.6 10.1 35 150-184 37-72 (120)
123 PF10037 MRP-S27: Mitochondria 98.4 2E-05 4.3E-10 67.0 14.9 123 64-186 60-186 (429)
124 KOG0985 Vesicle coat protein c 98.4 0.00027 5.7E-09 64.9 22.4 139 72-232 1106-1244(1666)
125 KOG3785 Uncharacterized conser 98.4 0.0006 1.3E-08 55.5 22.3 84 9-96 34-117 (557)
126 PF08579 RPM2: Mitochondrial r 98.4 1.1E-05 2.4E-10 54.1 10.2 79 177-255 29-116 (120)
127 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 4.2E-05 9.2E-10 64.7 16.1 125 175-305 171-295 (395)
128 KOG0624 dsRNA-activated protei 98.3 0.00091 2E-08 54.3 23.5 264 37-307 71-370 (504)
129 KOG3060 Uncharacterized conser 98.3 0.00064 1.4E-08 52.7 20.5 186 84-273 26-221 (289)
130 TIGR02552 LcrH_SycD type III s 98.3 5E-05 1.1E-09 54.7 14.4 58 176-234 54-111 (135)
131 KOG4162 Predicted calmodulin-b 98.3 0.00042 9.2E-09 61.7 22.0 240 64-305 317-574 (799)
132 TIGR02552 LcrH_SycD type III s 98.3 4.3E-05 9.2E-10 55.1 13.9 97 174-272 18-114 (135)
133 KOG2376 Signal recognition par 98.3 0.0018 3.8E-08 56.3 26.8 116 42-167 19-139 (652)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 6.3E-05 1.4E-09 63.6 16.0 125 105-235 171-295 (395)
135 KOG4162 Predicted calmodulin-b 98.3 0.00095 2.1E-08 59.6 23.1 280 16-306 463-782 (799)
136 KOG3785 Uncharacterized conser 98.3 0.00029 6.3E-09 57.2 18.3 197 75-276 290-494 (557)
137 KOG2053 Mitochondrial inherita 98.3 0.0034 7.3E-08 57.2 29.0 225 7-239 19-257 (932)
138 COG4783 Putative Zn-dependent 98.2 0.0007 1.5E-08 57.3 20.1 131 182-316 315-446 (484)
139 PF01535 PPR: PPR repeat; Int 98.2 2.1E-06 4.5E-11 44.2 3.4 30 280-309 2-31 (31)
140 PF01535 PPR: PPR repeat; Int 98.2 1.8E-06 4E-11 44.4 3.2 26 211-236 3-28 (31)
141 PF09976 TPR_21: Tetratricopep 98.2 0.00035 7.6E-09 51.0 16.0 116 151-268 24-143 (145)
142 PF06239 ECSIT: Evolutionarily 98.2 9.7E-05 2.1E-09 56.0 12.8 59 92-150 36-99 (228)
143 KOG3617 WD40 and TPR repeat-co 98.1 0.00075 1.6E-08 60.8 19.6 117 36-163 758-883 (1416)
144 KOG3616 Selective LIM binding 98.1 0.00031 6.8E-09 62.4 16.8 165 115-304 744-908 (1636)
145 KOG2376 Signal recognition par 98.1 0.00088 1.9E-08 58.0 18.9 122 76-204 18-141 (652)
146 PF06239 ECSIT: Evolutionarily 98.0 0.00012 2.6E-09 55.6 10.9 49 137-185 46-99 (228)
147 KOG0985 Vesicle coat protein c 98.0 0.0018 3.8E-08 59.9 19.5 202 36-270 1105-1306(1666)
148 PRK10866 outer membrane biogen 98.0 0.002 4.2E-08 51.4 17.7 175 76-269 38-238 (243)
149 cd00189 TPR Tetratricopeptide 98.0 0.00029 6.2E-09 46.6 11.3 21 214-234 40-60 (100)
150 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00068 1.5E-08 47.4 13.5 21 110-130 9-29 (119)
151 PF12895 Apc3: Anaphase-promot 97.9 2.2E-05 4.7E-10 51.4 5.2 79 222-302 3-82 (84)
152 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00063 1.4E-08 47.5 13.0 19 215-233 46-64 (119)
153 KOG1127 TPR repeat-containing 97.9 0.0018 3.9E-08 59.7 18.2 180 51-236 474-658 (1238)
154 cd00189 TPR Tetratricopeptide 97.9 0.00026 5.6E-09 46.8 10.5 96 210-307 2-97 (100)
155 KOG3616 Selective LIM binding 97.9 0.00069 1.5E-08 60.4 14.9 136 43-198 740-875 (1636)
156 PF05843 Suf: Suppressor of fo 97.9 0.00066 1.4E-08 55.4 14.1 131 139-272 2-136 (280)
157 PF05843 Suf: Suppressor of fo 97.9 0.0009 1.9E-08 54.7 14.2 128 105-236 3-135 (280)
158 PF12895 Apc3: Anaphase-promot 97.9 5.4E-05 1.2E-09 49.5 5.9 81 186-268 2-83 (84)
159 KOG3617 WD40 and TPR repeat-co 97.9 0.0032 6.9E-08 57.0 18.1 166 45-235 810-994 (1416)
160 KOG1914 mRNA cleavage and poly 97.8 0.0096 2.1E-07 51.4 20.1 150 119-271 347-500 (656)
161 PF14938 SNAP: Soluble NSF att 97.8 0.0032 6.9E-08 51.6 17.3 151 153-304 89-263 (282)
162 KOG0548 Molecular co-chaperone 97.8 0.0072 1.6E-07 52.0 19.4 193 76-272 230-455 (539)
163 KOG0624 dsRNA-activated protei 97.8 0.013 2.8E-07 47.8 26.0 284 18-307 20-336 (504)
164 CHL00033 ycf3 photosystem I as 97.8 0.00079 1.7E-08 50.5 11.6 64 173-236 35-100 (168)
165 PLN03088 SGT1, suppressor of 97.7 0.0013 2.8E-08 55.7 13.8 90 111-202 10-99 (356)
166 PRK02603 photosystem I assembl 97.7 0.0047 1E-07 46.5 15.3 89 104-193 36-126 (172)
167 PF13525 YfiO: Outer membrane 97.7 0.0035 7.7E-08 48.6 14.9 173 79-262 14-197 (203)
168 PRK10866 outer membrane biogen 97.7 0.0097 2.1E-07 47.5 17.6 181 35-235 32-239 (243)
169 CHL00033 ycf3 photosystem I as 97.7 0.0013 2.8E-08 49.3 12.1 92 140-232 37-137 (168)
170 PF14938 SNAP: Soluble NSF att 97.7 0.0034 7.3E-08 51.5 15.3 149 106-270 97-264 (282)
171 PRK02603 photosystem I assembl 97.7 0.0041 8.8E-08 46.9 14.6 90 138-228 35-126 (172)
172 PRK15363 pathogenicity island 97.7 0.0021 4.6E-08 46.6 12.1 91 213-305 40-130 (157)
173 PRK15363 pathogenicity island 97.7 0.0035 7.6E-08 45.5 13.2 89 146-236 43-131 (157)
174 PF03704 BTAD: Bacterial trans 97.7 0.0011 2.3E-08 48.5 11.0 77 245-322 64-145 (146)
175 KOG1127 TPR repeat-containing 97.6 0.012 2.6E-07 54.5 18.6 180 86-270 474-657 (1238)
176 PLN03088 SGT1, suppressor of 97.6 0.0031 6.6E-08 53.5 14.4 91 77-168 9-100 (356)
177 PF12688 TPR_5: Tetratrico pep 97.6 0.0042 9.1E-08 43.3 12.1 88 180-269 8-101 (120)
178 KOG2796 Uncharacterized conser 97.5 0.0069 1.5E-07 47.5 13.6 60 142-201 181-240 (366)
179 PF14559 TPR_19: Tetratricopep 97.5 0.00054 1.2E-08 42.5 6.5 49 186-235 4-52 (68)
180 PF04840 Vps16_C: Vps16, C-ter 97.5 0.045 9.7E-07 45.5 21.9 108 175-302 179-286 (319)
181 PRK10153 DNA-binding transcrip 97.4 0.02 4.3E-07 51.0 17.5 139 169-310 333-485 (517)
182 PRK10153 DNA-binding transcrip 97.4 0.032 7E-07 49.7 18.5 144 132-281 331-489 (517)
183 PF14559 TPR_19: Tetratricopep 97.4 0.00035 7.7E-09 43.4 4.7 49 83-131 4-53 (68)
184 PF12688 TPR_5: Tetratrico pep 97.4 0.0056 1.2E-07 42.7 10.8 90 42-131 8-103 (120)
185 PF13432 TPR_16: Tetratricopep 97.4 0.0013 2.7E-08 40.4 6.8 54 181-235 5-58 (65)
186 PF03704 BTAD: Bacterial trans 97.4 0.0019 4.2E-08 47.1 8.8 71 175-246 64-139 (146)
187 COG4700 Uncharacterized protei 97.3 0.028 6E-07 41.9 14.0 131 66-198 85-218 (251)
188 KOG0553 TPR repeat-containing 97.3 0.0036 7.8E-08 50.0 10.0 102 79-183 90-192 (304)
189 PF13414 TPR_11: TPR repeat; P 97.3 0.0019 4.1E-08 40.2 7.0 61 174-235 4-65 (69)
190 PF13432 TPR_16: Tetratricopep 97.3 0.0022 4.7E-08 39.4 7.1 54 78-131 5-59 (65)
191 KOG0553 TPR repeat-containing 97.3 0.0079 1.7E-07 48.1 11.4 96 149-248 92-187 (304)
192 PF12921 ATP13: Mitochondrial 97.2 0.006 1.3E-07 43.0 9.7 52 238-289 47-99 (126)
193 PRK10803 tol-pal system protei 97.2 0.0065 1.4E-07 48.9 10.7 92 38-131 146-245 (263)
194 PF12921 ATP13: Mitochondrial 97.2 0.0091 2E-07 42.1 10.0 49 169-217 48-97 (126)
195 KOG2796 Uncharacterized conser 97.2 0.023 4.9E-07 44.7 12.7 137 174-311 178-319 (366)
196 PF13414 TPR_11: TPR repeat; P 97.1 0.0026 5.6E-08 39.5 6.1 59 72-130 5-65 (69)
197 KOG3941 Intermediate in Toll s 97.1 0.013 2.9E-07 46.5 10.9 104 137-259 66-174 (406)
198 PF13525 YfiO: Outer membrane 97.1 0.063 1.4E-06 41.6 14.7 179 40-228 10-198 (203)
199 PF13371 TPR_9: Tetratricopept 97.0 0.004 8.6E-08 39.2 6.3 54 252-306 4-57 (73)
200 KOG3941 Intermediate in Toll s 97.0 0.01 2.2E-07 47.1 9.5 100 90-189 54-174 (406)
201 PRK10803 tol-pal system protei 97.0 0.03 6.4E-07 45.2 12.5 99 174-272 144-246 (263)
202 PF13371 TPR_9: Tetratricopept 96.9 0.0099 2.1E-07 37.3 7.8 54 182-236 4-57 (73)
203 PRK15331 chaperone protein Sic 96.9 0.05 1.1E-06 39.9 11.8 85 185-271 49-133 (165)
204 COG4235 Cytochrome c biogenesi 96.9 0.079 1.7E-06 42.7 13.9 99 172-272 155-256 (287)
205 KOG1130 Predicted G-alpha GTPa 96.8 0.016 3.4E-07 48.5 9.9 261 44-305 26-342 (639)
206 PF10300 DUF3808: Protein of u 96.8 0.096 2.1E-06 46.3 15.4 158 75-235 193-374 (468)
207 COG4235 Cytochrome c biogenesi 96.8 0.07 1.5E-06 43.0 13.0 113 99-215 151-267 (287)
208 KOG2041 WD40 repeat protein [G 96.7 0.16 3.4E-06 45.8 15.8 201 32-266 689-901 (1189)
209 PF04053 Coatomer_WDAD: Coatom 96.7 0.061 1.3E-06 46.9 13.3 131 105-268 297-427 (443)
210 PF09205 DUF1955: Domain of un 96.7 0.12 2.5E-06 36.3 12.8 139 151-311 15-153 (161)
211 COG4700 Uncharacterized protei 96.7 0.17 3.6E-06 37.9 17.1 129 101-233 87-218 (251)
212 PF13170 DUF4003: Protein of u 96.7 0.2 4.3E-06 41.3 15.3 127 51-179 78-223 (297)
213 PF13170 DUF4003: Protein of u 96.6 0.24 5.2E-06 40.8 15.5 128 119-248 78-222 (297)
214 PF13281 DUF4071: Domain of un 96.6 0.35 7.5E-06 40.9 19.7 32 241-272 303-334 (374)
215 COG3898 Uncharacterized membra 96.6 0.33 7.3E-06 40.7 25.6 249 46-307 131-392 (531)
216 PRK15331 chaperone protein Sic 96.6 0.12 2.7E-06 37.8 12.2 87 148-236 47-133 (165)
217 PF04840 Vps16_C: Vps16, C-ter 96.6 0.34 7.3E-06 40.4 21.6 111 138-268 177-287 (319)
218 PF13281 DUF4071: Domain of un 96.6 0.37 8E-06 40.8 19.2 165 142-308 145-335 (374)
219 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.24 5.3E-06 42.3 14.9 145 105-255 399-547 (660)
220 PF13424 TPR_12: Tetratricopep 96.5 0.0073 1.6E-07 38.6 5.0 60 175-234 7-72 (78)
221 COG4105 ComL DNA uptake lipopr 96.5 0.3 6.6E-06 38.6 17.5 175 80-271 44-232 (254)
222 KOG1538 Uncharacterized conser 96.5 0.09 1.9E-06 46.8 12.4 198 17-237 617-846 (1081)
223 KOG0550 Molecular chaperone (D 96.4 0.47 1E-05 40.2 16.4 154 148-307 179-350 (486)
224 PF13424 TPR_12: Tetratricopep 96.4 0.017 3.7E-07 36.8 6.4 61 209-269 6-72 (78)
225 KOG1130 Predicted G-alpha GTPa 96.4 0.059 1.3E-06 45.3 10.4 263 6-268 26-340 (639)
226 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.15 3.3E-06 43.4 12.6 127 38-166 400-530 (660)
227 PF04053 Coatomer_WDAD: Coatom 96.3 0.076 1.7E-06 46.3 11.4 156 45-233 271-427 (443)
228 KOG2280 Vacuolar assembly/sort 96.3 0.6 1.3E-05 42.5 16.6 261 19-302 492-794 (829)
229 PF08631 SPO22: Meiosis protei 96.2 0.52 1.1E-05 38.6 24.5 122 45-167 3-150 (278)
230 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.2 4.3E-06 43.1 13.0 63 138-202 75-141 (453)
231 KOG1538 Uncharacterized conser 96.2 0.92 2E-05 40.8 17.8 216 39-273 602-847 (1081)
232 KOG2114 Vacuolar assembly/sort 96.2 0.22 4.8E-06 45.7 13.6 213 37-270 285-517 (933)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.068 1.5E-06 45.8 9.7 64 69-132 74-141 (453)
234 COG3629 DnrI DNA-binding trans 96.0 0.079 1.7E-06 42.7 9.2 76 245-321 155-235 (280)
235 smart00299 CLH Clathrin heavy 96.0 0.39 8.4E-06 34.6 15.1 84 143-234 12-95 (140)
236 PF10300 DUF3808: Protein of u 95.8 1.2 2.6E-05 39.5 17.5 160 143-305 193-374 (468)
237 PF13512 TPR_18: Tetratricopep 95.8 0.31 6.8E-06 34.9 10.6 75 183-257 20-96 (142)
238 smart00299 CLH Clathrin heavy 95.8 0.46 1E-05 34.2 15.2 85 107-199 11-95 (140)
239 KOG0543 FKBP-type peptidyl-pro 95.7 0.55 1.2E-05 39.6 13.2 92 110-202 215-320 (397)
240 PF07035 Mic1: Colon cancer-as 95.7 0.58 1.3E-05 34.7 14.1 101 124-234 15-115 (167)
241 COG3629 DnrI DNA-binding trans 95.7 0.2 4.3E-06 40.5 10.3 78 174-252 154-236 (280)
242 KOG2610 Uncharacterized conser 95.6 0.77 1.7E-05 37.9 13.1 46 185-231 187-232 (491)
243 COG1729 Uncharacterized protei 95.6 0.16 3.4E-06 40.4 9.3 94 37-131 144-243 (262)
244 PF02259 FAT: FAT domain; Int 95.5 1.3 2.8E-05 37.6 16.2 63 244-306 147-212 (352)
245 PF13512 TPR_18: Tetratricopep 95.5 0.38 8.2E-06 34.5 10.1 54 80-133 20-77 (142)
246 PF10602 RPN7: 26S proteasome 95.4 0.83 1.8E-05 34.5 12.5 62 105-166 38-101 (177)
247 KOG2114 Vacuolar assembly/sort 95.2 1.4 3E-05 40.9 14.8 246 37-306 336-589 (933)
248 KOG2610 Uncharacterized conser 95.2 1.5 3.3E-05 36.3 15.6 155 80-235 113-274 (491)
249 PF13929 mRNA_stabil: mRNA sta 95.1 1.4 3.1E-05 35.6 15.2 138 186-323 141-288 (292)
250 COG1729 Uncharacterized protei 95.1 0.29 6.3E-06 39.0 9.3 97 105-202 144-244 (262)
251 PF09205 DUF1955: Domain of un 95.0 0.81 1.8E-05 32.3 12.8 62 177-239 90-151 (161)
252 PF10602 RPN7: 26S proteasome 95.0 1 2.2E-05 34.0 11.7 97 174-270 37-140 (177)
253 PF13428 TPR_14: Tetratricopep 94.9 0.13 2.9E-06 28.4 5.2 25 178-202 6-30 (44)
254 KOG0543 FKBP-type peptidyl-pro 94.8 0.72 1.6E-05 38.9 11.3 123 181-305 216-353 (397)
255 PF07079 DUF1347: Protein of u 94.8 2.4 5.1E-05 36.6 27.6 80 225-306 438-523 (549)
256 KOG1941 Acetylcholine receptor 94.7 2.1 4.7E-05 35.8 13.9 221 47-268 18-271 (518)
257 PF04184 ST7: ST7 protein; In 94.7 2 4.2E-05 37.6 13.7 73 177-250 263-338 (539)
258 PF07035 Mic1: Colon cancer-as 94.5 1.4 3.1E-05 32.7 16.2 137 158-309 14-151 (167)
259 COG0457 NrfG FOG: TPR repeat [ 94.5 1.7 3.8E-05 33.5 28.3 166 105-271 61-230 (291)
260 PF02259 FAT: FAT domain; Int 94.3 2.9 6.3E-05 35.4 19.1 66 171-236 144-212 (352)
261 KOG1585 Protein required for f 94.0 2.4 5.2E-05 33.5 18.2 92 210-302 152-251 (308)
262 COG3118 Thioredoxin domain-con 94.0 2.8 6E-05 34.1 15.0 175 77-258 110-287 (304)
263 PF13428 TPR_14: Tetratricopep 94.0 0.17 3.8E-06 28.0 4.4 26 211-236 4-29 (44)
264 KOG4555 TPR repeat-containing 94.0 1.5 3.2E-05 30.9 11.2 92 111-203 51-145 (175)
265 PF08631 SPO22: Meiosis protei 93.9 3 6.5E-05 34.2 23.8 221 80-303 3-271 (278)
266 PF09613 HrpB1_HrpK: Bacterial 93.9 1.9 4.1E-05 31.7 12.5 52 149-202 21-73 (160)
267 KOG4570 Uncharacterized conser 93.8 0.83 1.8E-05 37.3 9.3 98 170-271 61-163 (418)
268 KOG2041 WD40 repeat protein [G 93.8 5.4 0.00012 36.6 19.5 254 39-305 764-1084(1189)
269 KOG4570 Uncharacterized conser 93.8 2.2 4.8E-05 34.9 11.5 96 105-202 66-164 (418)
270 PF13176 TPR_7: Tetratricopept 93.7 0.18 4E-06 26.4 3.9 24 106-129 2-25 (36)
271 PF13176 TPR_7: Tetratricopept 93.7 0.21 4.6E-06 26.2 4.1 26 210-235 1-26 (36)
272 KOG1920 IkappaB kinase complex 93.6 7.7 0.00017 37.9 17.5 55 215-270 972-1026(1265)
273 PF09613 HrpB1_HrpK: Bacterial 93.5 2.2 4.9E-05 31.3 11.5 111 181-299 18-130 (160)
274 KOG1920 IkappaB kinase complex 93.4 4.8 0.0001 39.1 14.6 116 135-270 932-1053(1265)
275 COG3118 Thioredoxin domain-con 93.3 3.7 8.1E-05 33.4 15.6 181 109-298 109-292 (304)
276 COG4649 Uncharacterized protei 93.2 2.6 5.7E-05 31.4 13.4 128 114-241 69-200 (221)
277 COG1747 Uncharacterized N-term 92.7 6.6 0.00014 34.7 21.9 179 102-288 65-249 (711)
278 cd00923 Cyt_c_Oxidase_Va Cytoc 92.7 1.4 3.1E-05 29.0 7.4 49 153-201 22-70 (103)
279 COG2976 Uncharacterized protei 92.6 3.6 7.9E-05 31.3 14.5 130 172-308 53-189 (207)
280 COG4649 Uncharacterized protei 92.5 3.4 7.3E-05 30.8 15.4 139 174-313 60-202 (221)
281 KOG4555 TPR repeat-containing 92.5 2.8 6E-05 29.6 10.0 89 79-168 52-145 (175)
282 PF11207 DUF2989: Protein of u 92.4 2 4.4E-05 32.8 9.1 22 241-262 176-197 (203)
283 PF07079 DUF1347: Protein of u 92.4 6.8 0.00015 34.0 21.4 259 8-272 17-327 (549)
284 PF02284 COX5A: Cytochrome c o 92.3 1.1 2.3E-05 29.9 6.5 43 54-96 29-71 (108)
285 COG0457 NrfG FOG: TPR repeat [ 92.2 4.3 9.2E-05 31.2 24.9 222 48-272 36-265 (291)
286 PF02284 COX5A: Cytochrome c o 92.1 2.3 5E-05 28.4 7.8 44 227-270 29-72 (108)
287 PF13431 TPR_17: Tetratricopep 92.0 0.33 7.1E-06 25.1 3.3 22 207-228 12-33 (34)
288 KOG0276 Vesicle coat complex C 91.8 6.4 0.00014 35.5 12.4 97 115-232 649-745 (794)
289 PF13431 TPR_17: Tetratricopep 91.6 0.21 4.5E-06 25.9 2.3 26 98-123 7-33 (34)
290 COG4105 ComL DNA uptake lipopr 91.6 6 0.00013 31.5 17.6 185 33-236 33-232 (254)
291 KOG1550 Extracellular protein 91.5 11 0.00024 34.4 18.1 185 119-311 228-430 (552)
292 cd00923 Cyt_c_Oxidase_Va Cytoc 91.4 1.7 3.6E-05 28.8 6.6 48 223-270 22-69 (103)
293 PF13762 MNE1: Mitochondrial s 91.4 4.1 9E-05 29.4 11.2 78 74-151 43-128 (145)
294 PRK15180 Vi polysaccharide bio 91.0 2.5 5.4E-05 36.8 9.1 128 37-167 291-420 (831)
295 COG1747 Uncharacterized N-term 90.9 11 0.00024 33.4 22.8 164 136-307 64-234 (711)
296 KOG0276 Vesicle coat complex C 90.9 3.5 7.5E-05 37.0 10.0 133 105-270 616-748 (794)
297 PRK11906 transcriptional regul 90.8 4.6 0.0001 35.2 10.6 81 85-166 319-400 (458)
298 PRK11906 transcriptional regul 90.3 12 0.00026 32.8 16.9 114 85-201 273-400 (458)
299 PF13374 TPR_10: Tetratricopep 90.0 1.1 2.3E-05 24.0 4.5 27 209-235 3-29 (42)
300 COG4455 ImpE Protein of avirul 89.9 4 8.8E-05 31.7 8.5 56 109-165 7-62 (273)
301 KOG2280 Vacuolar assembly/sort 89.8 17 0.00036 33.8 23.4 135 28-163 425-571 (829)
302 PF00637 Clathrin: Region in C 89.7 0.18 3.8E-06 36.5 1.3 54 144-197 13-66 (143)
303 PF13374 TPR_10: Tetratricopep 89.6 0.81 1.8E-05 24.5 3.7 27 279-305 3-29 (42)
304 PRK15180 Vi polysaccharide bio 89.5 4.3 9.3E-05 35.5 9.3 86 218-305 333-418 (831)
305 PF00637 Clathrin: Region in C 89.4 0.14 3.1E-06 37.0 0.7 84 179-269 13-96 (143)
306 COG4455 ImpE Protein of avirul 88.8 4.7 0.0001 31.3 8.2 77 140-217 3-81 (273)
307 PRK09687 putative lyase; Provi 88.8 12 0.00026 30.7 26.2 121 172-306 141-262 (280)
308 KOG1585 Protein required for f 88.7 11 0.00023 30.1 17.4 206 36-266 32-250 (308)
309 PF07163 Pex26: Pex26 protein; 88.5 8.4 0.00018 31.2 9.7 87 110-196 90-181 (309)
310 KOG0550 Molecular chaperone (D 88.0 16 0.00035 31.4 19.1 88 148-236 259-349 (486)
311 PHA02875 ankyrin repeat protei 87.8 15 0.00032 32.1 12.2 13 112-124 74-86 (413)
312 PF11207 DUF2989: Protein of u 87.8 9.1 0.0002 29.4 9.2 81 146-228 115-198 (203)
313 TIGR03504 FimV_Cterm FimV C-te 87.7 1 2.2E-05 25.0 3.1 29 283-311 4-32 (44)
314 PF00515 TPR_1: Tetratricopept 87.5 1.5 3.3E-05 22.3 3.7 28 279-306 2-29 (34)
315 PF00515 TPR_1: Tetratricopept 87.5 2.4 5.1E-05 21.5 4.5 27 210-236 3-29 (34)
316 PF11838 ERAP1_C: ERAP1-like C 87.3 16 0.00035 30.5 16.0 144 154-303 146-304 (324)
317 TIGR02561 HrpB1_HrpK type III 87.2 9.4 0.0002 27.7 9.3 49 83-133 23-74 (153)
318 COG3898 Uncharacterized membra 87.2 18 0.00039 31.0 23.9 253 38-301 85-352 (531)
319 PF13929 mRNA_stabil: mRNA sta 87.2 15 0.00033 30.0 18.0 138 151-288 141-288 (292)
320 COG3947 Response regulator con 86.9 5.1 0.00011 32.6 7.7 207 110-320 94-360 (361)
321 PF13762 MNE1: Mitochondrial s 86.7 9.9 0.00022 27.5 10.9 81 176-256 42-128 (145)
322 PF07719 TPR_2: Tetratricopept 86.4 1.9 4.1E-05 21.7 3.7 27 280-306 3-29 (34)
323 PF13174 TPR_6: Tetratricopept 86.2 0.84 1.8E-05 22.9 2.3 24 78-101 8-31 (33)
324 PF07163 Pex26: Pex26 protein; 86.0 12 0.00025 30.4 9.2 88 179-266 89-181 (309)
325 PF02847 MA3: MA3 domain; Int 85.9 5 0.00011 27.5 6.7 21 214-234 8-28 (113)
326 PF07721 TPR_4: Tetratricopept 85.5 1.2 2.6E-05 21.3 2.4 20 283-302 6-25 (26)
327 COG2976 Uncharacterized protei 84.9 15 0.00033 28.1 11.2 91 109-204 95-190 (207)
328 KOG0991 Replication factor C, 84.7 18 0.00039 28.7 12.5 58 219-277 203-272 (333)
329 PF07719 TPR_2: Tetratricopept 84.7 1 2.2E-05 22.8 2.2 26 106-131 4-29 (34)
330 PF13181 TPR_8: Tetratricopept 84.7 2.6 5.5E-05 21.3 3.7 27 280-306 3-29 (34)
331 TIGR03504 FimV_Cterm FimV C-te 84.7 3.6 7.8E-05 22.8 4.3 21 215-235 6-26 (44)
332 KOG1586 Protein required for f 84.6 18 0.00039 28.6 12.7 22 218-239 164-185 (288)
333 PRK09687 putative lyase; Provi 84.4 21 0.00046 29.3 24.8 235 32-289 34-278 (280)
334 KOG4077 Cytochrome c oxidase, 84.1 9.4 0.0002 26.8 6.9 47 226-272 67-113 (149)
335 PF04184 ST7: ST7 protein; In 84.0 30 0.00065 30.7 21.5 58 109-166 265-323 (539)
336 PF10345 Cohesin_load: Cohesin 83.5 38 0.00083 31.5 19.6 194 102-305 29-252 (608)
337 PF13181 TPR_8: Tetratricopept 82.7 4.6 9.9E-05 20.3 4.4 26 210-235 3-28 (34)
338 KOG1941 Acetylcholine receptor 82.1 30 0.00066 29.4 13.4 201 104-304 44-272 (518)
339 PF04097 Nic96: Nup93/Nic96; 82.1 44 0.00095 31.1 17.8 45 37-83 114-158 (613)
340 KOG4077 Cytochrome c oxidase, 81.8 15 0.00033 25.8 7.3 47 156-202 67-113 (149)
341 COG4785 NlpI Lipoprotein NlpI, 81.4 24 0.00052 27.7 15.0 186 78-273 73-267 (297)
342 COG5159 RPN6 26S proteasome re 81.0 28 0.00061 28.5 9.5 160 143-302 8-189 (421)
343 KOG4648 Uncharacterized conser 80.7 10 0.00022 31.8 7.2 53 181-235 105-158 (536)
344 COG4785 NlpI Lipoprotein NlpI, 80.7 25 0.00055 27.5 15.9 218 10-239 38-268 (297)
345 TIGR02561 HrpB1_HrpK type III 79.6 21 0.00046 26.0 11.5 51 116-168 23-74 (153)
346 PHA02875 ankyrin repeat protei 79.1 28 0.00061 30.4 10.3 206 80-313 9-230 (413)
347 cd08819 CARD_MDA5_2 Caspase ac 78.9 15 0.00033 23.9 7.5 14 222-235 50-63 (88)
348 PF10579 Rapsyn_N: Rapsyn N-te 78.7 6.7 0.00014 24.9 4.4 20 105-124 45-64 (80)
349 PF11848 DUF3368: Domain of un 77.0 10 0.00023 21.4 4.6 30 116-145 15-44 (48)
350 COG2909 MalT ATP-dependent tra 76.3 75 0.0016 30.5 20.9 223 81-303 426-684 (894)
351 COG5108 RPO41 Mitochondrial DN 76.1 42 0.0009 31.1 10.1 75 178-255 33-115 (1117)
352 KOG4234 TPR repeat-containing 76.0 34 0.00074 26.5 9.5 55 181-236 142-196 (271)
353 PF06552 TOM20_plant: Plant sp 75.9 32 0.00069 26.0 9.8 28 135-168 110-137 (186)
354 PF10366 Vps39_1: Vacuolar sor 75.7 14 0.0003 25.3 5.8 26 106-131 42-67 (108)
355 PF11846 DUF3366: Domain of un 75.5 21 0.00046 27.3 7.6 32 240-271 141-172 (193)
356 KOG4234 TPR repeat-containing 75.4 31 0.00067 26.7 7.9 91 181-273 103-198 (271)
357 PF15297 CKAP2_C: Cytoskeleton 75.0 25 0.00055 29.5 8.0 64 86-149 119-186 (353)
358 PF14689 SPOB_a: Sensor_kinase 74.9 14 0.0003 22.2 5.1 24 246-269 26-49 (62)
359 PF11846 DUF3366: Domain of un 74.8 15 0.00032 28.2 6.6 34 134-167 140-173 (193)
360 PF14689 SPOB_a: Sensor_kinase 74.8 6.8 0.00015 23.6 3.7 24 108-131 28-51 (62)
361 COG3947 Response regulator con 74.7 47 0.001 27.4 17.8 71 210-281 281-356 (361)
362 PF11848 DUF3368: Domain of un 74.6 13 0.00028 21.0 5.1 26 222-247 16-41 (48)
363 PF10579 Rapsyn_N: Rapsyn N-te 74.4 11 0.00024 23.9 4.6 53 40-93 12-66 (80)
364 PF11663 Toxin_YhaV: Toxin wit 73.2 4.2 9E-05 28.8 2.8 32 115-148 107-138 (140)
365 cd08819 CARD_MDA5_2 Caspase ac 72.8 23 0.0005 23.0 7.2 66 227-298 21-86 (88)
366 COG0735 Fur Fe2+/Zn2+ uptake r 71.8 29 0.00063 25.2 7.0 44 179-222 26-69 (145)
367 KOG4648 Uncharacterized conser 71.3 17 0.00036 30.5 6.2 44 148-193 107-151 (536)
368 COG0735 Fur Fe2+/Zn2+ uptake r 70.7 38 0.00082 24.6 7.9 45 127-172 10-54 (145)
369 smart00544 MA3 Domain in DAP-5 70.7 31 0.00067 23.6 9.2 62 211-274 5-68 (113)
370 PF06552 TOM20_plant: Plant sp 70.3 23 0.00051 26.7 6.2 93 37-135 30-139 (186)
371 PF08542 Rep_fac_C: Replicatio 70.2 19 0.00042 23.3 5.5 49 241-291 3-51 (89)
372 PF11663 Toxin_YhaV: Toxin wit 69.9 5.4 0.00012 28.3 2.7 21 187-207 109-129 (140)
373 smart00028 TPR Tetratricopepti 69.9 8.5 0.00018 18.1 3.1 23 108-130 6-28 (34)
374 PRK08691 DNA polymerase III su 69.7 1E+02 0.0022 29.2 11.8 45 190-236 181-226 (709)
375 PRK10564 maltose regulon perip 67.5 14 0.00031 30.3 5.1 29 212-240 261-289 (303)
376 PRK10564 maltose regulon perip 66.8 11 0.00025 30.9 4.4 46 30-75 251-297 (303)
377 PF04097 Nic96: Nup93/Nic96; 66.4 1.1E+02 0.0025 28.5 12.9 41 110-151 118-158 (613)
378 KOG1464 COP9 signalosome, subu 66.4 71 0.0015 26.1 22.8 200 29-229 20-252 (440)
379 PRK07003 DNA polymerase III su 66.2 1.3E+02 0.0028 29.0 11.3 44 190-235 181-225 (830)
380 PRK11639 zinc uptake transcrip 64.9 57 0.0012 24.4 7.8 43 180-222 32-74 (169)
381 TIGR02508 type_III_yscG type I 64.9 40 0.00087 22.7 8.8 78 154-238 21-98 (115)
382 cd00280 TRFH Telomeric Repeat 64.7 60 0.0013 24.7 7.7 21 216-236 119-139 (200)
383 KOG4567 GTPase-activating prot 64.4 47 0.001 27.6 7.2 70 228-302 263-342 (370)
384 KOG2066 Vacuolar assembly/sort 64.2 1.3E+02 0.0029 28.5 14.8 151 77-236 363-533 (846)
385 PF03745 DUF309: Domain of unk 64.2 29 0.00063 20.9 5.0 33 115-147 11-43 (62)
386 KOG4642 Chaperone-dependent E3 63.9 75 0.0016 25.5 10.5 118 45-164 20-143 (284)
387 PF04762 IKI3: IKI3 family; I 63.0 1.6E+02 0.0036 29.1 16.5 27 141-167 815-843 (928)
388 PF14669 Asp_Glu_race_2: Putat 62.8 68 0.0015 24.6 13.7 83 140-232 109-205 (233)
389 COG4259 Uncharacterized protei 62.7 44 0.00095 22.4 5.7 53 54-106 56-108 (121)
390 KOG4567 GTPase-activating prot 62.4 60 0.0013 27.0 7.5 70 193-267 263-342 (370)
391 PF10366 Vps39_1: Vacuolar sor 62.2 48 0.001 22.7 7.5 26 246-271 42-67 (108)
392 PF02847 MA3: MA3 domain; Int 61.5 47 0.001 22.6 6.3 21 109-129 8-28 (113)
393 KOG2908 26S proteasome regulat 61.4 1E+02 0.0022 26.1 10.7 67 143-209 80-156 (380)
394 PF14853 Fis1_TPR_C: Fis1 C-te 61.4 9 0.00019 22.2 2.2 24 249-272 7-30 (53)
395 KOG0403 Neoplastic transformat 61.1 1.2E+02 0.0026 26.8 15.6 60 38-97 348-407 (645)
396 PF07575 Nucleopor_Nup85: Nup8 60.9 14 0.00031 33.8 4.5 58 106-165 408-465 (566)
397 TIGR02508 type_III_yscG type I 60.6 49 0.0011 22.3 9.1 57 252-314 48-104 (115)
398 KOG1258 mRNA processing protei 60.6 1.4E+02 0.003 27.4 22.8 94 38-132 82-180 (577)
399 PF13934 ELYS: Nuclear pore co 60.4 84 0.0018 24.9 9.4 99 75-184 81-183 (226)
400 KOG1550 Extracellular protein 60.0 1.4E+02 0.0031 27.4 23.8 155 45-205 259-429 (552)
401 KOG0890 Protein kinase of the 59.6 2.7E+02 0.0059 30.5 14.6 150 108-267 1388-1542(2382)
402 cd07153 Fur_like Ferric uptake 59.0 40 0.00088 23.1 5.6 16 189-204 16-31 (116)
403 PF12926 MOZART2: Mitotic-spin 58.9 47 0.001 21.6 7.0 64 33-98 8-71 (88)
404 PRK09857 putative transposase; 58.9 82 0.0018 26.1 8.1 66 246-312 209-274 (292)
405 PF11817 Foie-gras_1: Foie gra 58.6 69 0.0015 25.7 7.6 58 142-199 182-244 (247)
406 KOG4507 Uncharacterized conser 57.6 64 0.0014 29.5 7.5 84 83-167 620-705 (886)
407 cd00280 TRFH Telomeric Repeat 57.2 85 0.0018 23.9 7.8 49 154-202 85-140 (200)
408 PF01475 FUR: Ferric uptake re 57.1 37 0.00081 23.5 5.2 45 178-222 12-56 (120)
409 PF09454 Vps23_core: Vps23 cor 56.5 38 0.00082 20.7 4.4 27 176-202 11-37 (65)
410 KOG0890 Protein kinase of the 55.2 3.2E+02 0.007 30.0 22.1 63 243-308 1670-1732(2382)
411 PRK11639 zinc uptake transcrip 55.2 78 0.0017 23.7 6.9 62 198-260 16-77 (169)
412 COG5159 RPN6 26S proteasome re 55.1 1.2E+02 0.0026 25.1 11.9 135 109-243 9-160 (421)
413 PF11838 ERAP1_C: ERAP1-like C 54.9 1.2E+02 0.0027 25.2 18.8 109 189-302 146-261 (324)
414 PF09454 Vps23_core: Vps23 cor 54.9 31 0.00066 21.1 3.8 49 241-290 6-54 (65)
415 KOG3364 Membrane protein invol 54.7 78 0.0017 22.8 8.4 66 207-272 31-100 (149)
416 KOG3807 Predicted membrane pro 54.6 1.3E+02 0.0029 25.4 9.2 59 213-271 280-339 (556)
417 PF11817 Foie-gras_1: Foie gra 54.4 1.1E+02 0.0023 24.7 8.0 54 213-266 183-241 (247)
418 PRK13342 recombination factor 54.4 1.5E+02 0.0033 26.0 18.3 36 152-187 244-279 (413)
419 PF07575 Nucleopor_Nup85: Nup8 54.3 50 0.0011 30.4 6.9 24 291-314 508-531 (566)
420 PF10475 DUF2450: Protein of u 53.9 1.3E+02 0.0028 25.0 9.3 109 144-263 104-217 (291)
421 PRK09462 fur ferric uptake reg 53.6 84 0.0018 22.8 8.0 35 188-222 32-66 (148)
422 PF08424 NRDE-2: NRDE-2, neces 53.0 1.4E+02 0.003 25.2 16.2 23 252-274 163-185 (321)
423 COG5108 RPO41 Mitochondrial DN 53.0 1.3E+02 0.0027 28.2 8.6 89 75-166 33-131 (1117)
424 TIGR01228 hutU urocanate hydra 52.3 1.8E+02 0.0038 26.1 9.7 66 117-195 208-278 (545)
425 PF10475 DUF2450: Protein of u 52.2 1.3E+02 0.0028 25.0 8.3 112 177-300 102-219 (291)
426 KOG2063 Vacuolar assembly/sort 52.2 2.4E+02 0.0052 27.6 14.9 26 38-63 507-532 (877)
427 PF15297 CKAP2_C: Cytoskeleton 52.1 1.5E+02 0.0032 25.2 8.9 35 283-317 145-179 (353)
428 TIGR03581 EF_0839 conserved hy 52.1 1.1E+02 0.0023 24.0 7.0 81 85-165 136-235 (236)
429 PRK13342 recombination factor 52.1 1.7E+02 0.0036 25.8 18.2 138 119-275 153-302 (413)
430 KOG0687 26S proteasome regulat 51.7 1.5E+02 0.0032 25.1 12.5 20 117-136 36-55 (393)
431 PF10345 Cohesin_load: Cohesin 51.4 2.1E+02 0.0045 26.7 19.8 180 88-268 39-250 (608)
432 PRK09462 fur ferric uptake reg 51.0 93 0.002 22.6 7.2 62 127-189 6-68 (148)
433 KOG0686 COP9 signalosome, subu 50.7 1.7E+02 0.0037 25.5 13.7 62 105-166 152-215 (466)
434 KOG1464 COP9 signalosome, subu 50.5 1.4E+02 0.003 24.4 15.6 182 13-194 43-252 (440)
435 KOG0403 Neoplastic transformat 50.1 1.8E+02 0.004 25.7 17.1 75 246-321 512-586 (645)
436 PF12862 Apc5: Anaphase-promot 50.1 66 0.0014 21.1 5.3 17 80-96 51-67 (94)
437 PRK11619 lytic murein transgly 49.0 2.4E+02 0.0051 26.7 21.4 117 186-305 254-373 (644)
438 PF12862 Apc5: Anaphase-promot 48.9 75 0.0016 20.9 6.6 23 214-236 47-69 (94)
439 PRK09857 putative transposase; 48.4 1.6E+02 0.0034 24.5 9.6 62 178-240 211-272 (292)
440 PF08311 Mad3_BUB1_I: Mad3/BUB 47.4 99 0.0021 21.8 8.3 75 189-268 49-124 (126)
441 KOG0686 COP9 signalosome, subu 47.2 2E+02 0.0042 25.2 14.6 24 140-163 152-175 (466)
442 smart00386 HAT HAT (Half-A-TPR 47.1 34 0.00074 16.4 3.8 13 189-201 3-15 (33)
443 KOG0687 26S proteasome regulat 46.8 1.8E+02 0.0039 24.6 15.2 94 175-270 106-208 (393)
444 cd07153 Fur_like Ferric uptake 46.5 62 0.0013 22.1 4.9 48 213-260 5-52 (116)
445 KOG2063 Vacuolar assembly/sort 46.2 3E+02 0.0065 27.0 18.2 187 105-291 506-745 (877)
446 PF14669 Asp_Glu_race_2: Putat 45.5 1.4E+02 0.003 23.0 12.9 56 248-303 137-206 (233)
447 PF04090 RNA_pol_I_TF: RNA pol 44.6 1.5E+02 0.0032 23.0 7.0 64 243-306 41-104 (199)
448 PRK10941 hypothetical protein; 44.5 1.8E+02 0.0038 23.9 10.7 58 177-235 185-242 (269)
449 TIGR03581 EF_0839 conserved hy 43.9 85 0.0018 24.6 5.4 44 262-305 191-235 (236)
450 PF09477 Type_III_YscG: Bacter 43.8 1E+02 0.0023 21.1 10.2 88 188-283 21-108 (116)
451 PRK14951 DNA polymerase III su 43.5 2.8E+02 0.0062 26.0 11.9 33 201-235 198-230 (618)
452 smart00638 LPD_N Lipoprotein N 43.3 2.7E+02 0.0059 25.7 26.0 246 68-323 308-573 (574)
453 PF10255 Paf67: RNA polymerase 43.1 2.1E+02 0.0046 25.0 8.4 100 136-235 70-191 (404)
454 COG2909 MalT ATP-dependent tra 43.0 3.3E+02 0.0071 26.6 25.2 195 114-308 426-648 (894)
455 PF12926 MOZART2: Mitotic-spin 42.9 93 0.002 20.3 8.1 43 124-166 29-71 (88)
456 KOG2908 26S proteasome regulat 42.6 2.1E+02 0.0046 24.3 11.4 57 110-166 82-143 (380)
457 PF04910 Tcf25: Transcriptiona 42.3 2.2E+02 0.0049 24.5 15.5 56 215-270 110-166 (360)
458 PF07678 A2M_comp: A-macroglob 42.1 1.7E+02 0.0038 23.4 7.5 20 182-201 201-220 (246)
459 PF09670 Cas_Cas02710: CRISPR- 41.9 2.3E+02 0.0051 24.6 11.5 51 150-201 143-197 (379)
460 smart00804 TAP_C C-terminal do 41.8 32 0.00068 20.9 2.4 21 293-313 40-60 (63)
461 KOG1308 Hsp70-interacting prot 41.2 25 0.00055 29.5 2.5 88 47-135 126-214 (377)
462 cd02682 MIT_AAA_Arch MIT: doma 40.9 66 0.0014 20.3 3.8 15 254-268 17-31 (75)
463 PF01475 FUR: Ferric uptake re 40.6 61 0.0013 22.4 4.2 49 211-259 10-58 (120)
464 PF03745 DUF309: Domain of unk 40.3 83 0.0018 18.9 5.7 13 257-269 13-25 (62)
465 KOG2297 Predicted translation 39.8 2.3E+02 0.0049 23.8 14.2 21 173-193 321-341 (412)
466 PF08314 Sec39: Secretory path 39.8 3.5E+02 0.0076 26.0 10.3 30 32-61 429-458 (715)
467 COG5187 RPN7 26S proteasome re 39.7 2.2E+02 0.0048 23.7 11.5 149 155-305 55-219 (412)
468 PRK14958 DNA polymerase III su 39.6 3E+02 0.0065 25.1 12.2 74 200-276 192-278 (509)
469 KOG1258 mRNA processing protei 39.2 3.1E+02 0.0068 25.2 19.6 182 103-292 297-489 (577)
470 COG4003 Uncharacterized protei 38.6 54 0.0012 20.9 3.1 28 283-310 36-63 (98)
471 KOG2582 COP9 signalosome, subu 38.5 2.6E+02 0.0056 24.1 11.7 200 105-308 104-346 (422)
472 cd08326 CARD_CASP9 Caspase act 37.5 1.1E+02 0.0025 19.7 6.4 15 224-238 46-60 (84)
473 COG0790 FOG: TPR repeat, SEL1 37.5 2.3E+02 0.005 23.2 21.2 86 81-170 52-145 (292)
474 KOG3636 Uncharacterized conser 37.3 2.9E+02 0.0064 24.5 8.1 94 21-114 169-271 (669)
475 cd08790 DED_DEDD Death Effecto 36.6 89 0.0019 20.8 4.0 57 220-278 36-92 (97)
476 KOG3807 Predicted membrane pro 36.6 1.5E+02 0.0033 25.1 6.2 59 108-166 280-339 (556)
477 PF06957 COPI_C: Coatomer (COP 36.5 3E+02 0.0066 24.3 10.2 32 140-171 302-333 (422)
478 PF11123 DNA_Packaging_2: DNA 36.2 1.1E+02 0.0024 19.2 4.7 14 292-305 59-72 (82)
479 PF04190 DUF410: Protein of un 36.1 2.4E+02 0.0051 23.0 17.6 25 207-231 89-113 (260)
480 KOG4521 Nuclear pore complex, 35.6 5E+02 0.011 26.5 13.6 123 173-301 983-1125(1480)
481 PRK14956 DNA polymerase III su 35.5 3.4E+02 0.0073 24.6 13.1 44 121-166 184-228 (484)
482 PF13934 ELYS: Nuclear pore co 35.2 2.3E+02 0.0049 22.5 15.4 21 214-234 114-134 (226)
483 PF09986 DUF2225: Uncharacteri 35.2 2.2E+02 0.0048 22.3 9.9 24 284-307 171-194 (214)
484 PF00244 14-3-3: 14-3-3 protei 35.0 2.3E+02 0.0051 22.6 9.4 161 109-269 7-195 (236)
485 KOG2659 LisH motif-containing 35.0 2.3E+02 0.005 22.5 9.0 98 204-303 22-128 (228)
486 COG2178 Predicted RNA-binding 34.3 2.2E+02 0.0047 22.0 10.3 17 255-271 133-149 (204)
487 KOG1839 Uncharacterized protei 33.8 5.4E+02 0.012 26.4 11.4 155 111-265 940-1121(1236)
488 KOG2066 Vacuolar assembly/sort 33.6 4.4E+02 0.0096 25.4 19.3 22 144-165 511-532 (846)
489 KOG0376 Serine-threonine phosp 33.4 1.8E+02 0.0039 25.9 6.4 102 42-147 11-114 (476)
490 smart00544 MA3 Domain in DAP-5 33.4 1.6E+02 0.0034 20.0 9.7 62 176-239 5-68 (113)
491 PF09090 MIF4G_like_2: MIF4G l 33.2 2.6E+02 0.0057 22.6 9.5 52 171-222 9-64 (253)
492 COG5210 GTPase-activating prot 33.1 3.7E+02 0.0081 24.3 10.4 49 193-241 362-410 (496)
493 KOG4814 Uncharacterized conser 32.4 4E+02 0.0087 25.1 8.5 89 42-131 361-456 (872)
494 PF02607 B12-binding_2: B12 bi 31.8 96 0.0021 19.3 3.7 35 221-255 14-48 (79)
495 PHA02798 ankyrin-like protein; 31.4 2.9E+02 0.0063 24.9 8.0 153 123-277 51-213 (489)
496 KOG0376 Serine-threonine phosp 31.3 1.6E+02 0.0035 26.1 5.9 18 114-131 15-32 (476)
497 KOG1114 Tripeptidyl peptidase 31.3 5.4E+02 0.012 25.6 14.8 81 224-305 1212-1293(1304)
498 PRK14958 DNA polymerase III su 31.3 4.1E+02 0.0089 24.3 12.3 21 222-242 259-279 (509)
499 COG4259 Uncharacterized protei 31.1 1.7E+02 0.0037 19.8 6.4 66 258-324 52-117 (121)
500 cd08315 Death_TRAILR_DR4_DR5 D 31.0 1.6E+02 0.0036 19.6 4.8 48 87-134 48-95 (96)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-54 Score=397.95 Aligned_cols=285 Identities=13% Similarity=0.109 Sum_probs=155.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhc----CCCCHHHH
Q 038109 31 DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK----GFPRKSAY 106 (324)
Q Consensus 31 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~ 106 (324)
+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ..||..+|
T Consensus 503 v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy 582 (1060)
T PLN03218 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555532 12455555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038109 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186 (324)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 186 (324)
+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~ 662 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266 (324)
Q Consensus 187 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 266 (324)
|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHH
Q 038109 267 MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315 (324)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 315 (324)
++|...|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 5555555555555555555555555555555555555555555554443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-54 Score=396.93 Aligned_cols=312 Identities=15% Similarity=0.196 Sum_probs=298.0
Q ss_pred ccccCCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhh
Q 038109 3 LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82 (324)
Q Consensus 3 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 82 (324)
+++.+.+.+.++.|..+++.+... |+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~---Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEA---GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 567788889988888877766554 58999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHccCcHHHHH
Q 038109 83 LSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE--GGFGLSAITFHPILSVLTRGKRMEEAW 158 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~~~~~~a~ 158 (324)
.|++++|.++|+.|.+. .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999643 49999999999999999999999999999986 678999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038109 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238 (324)
Q Consensus 159 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 238 (324)
++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHHH
Q 038109 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRD 317 (324)
Q Consensus 239 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 317 (324)
+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.|+..++.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-49 Score=362.43 Aligned_cols=305 Identities=15% Similarity=0.106 Sum_probs=212.3
Q ss_pred ccccCCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhh
Q 038109 3 LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82 (324)
Q Consensus 3 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 82 (324)
++..+...|++.+|+++++.+.... +..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++++|++
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~--~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k 170 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGC--PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK 170 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc
Confidence 3455667788888888887776433 46799999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHH
Q 038109 83 LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 162 (324)
.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++.
T Consensus 171 ~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 171 CGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred CCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999976 89999999999999999999999999999988887777766665555555555555555555
Q ss_pred HHHhCCCCCCH-------------------------------HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHH
Q 038109 163 VMKEIRVSPDL-------------------------------TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211 (324)
Q Consensus 163 ~m~~~~~~~~~-------------------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 211 (324)
.+.+.|+.||. .+||++|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 55555544444 45555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCc
Q 038109 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291 (324)
Q Consensus 212 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (324)
++++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.+ ||..+|++||.+|++.
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHc
Confidence 555555555555555555555555555555555555555555555555555555555532 3555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHH
Q 038109 292 ERFNEANFILKEMNKRDLKMGFKL 315 (324)
Q Consensus 292 g~~~~a~~~~~~m~~~~~~~~~~~ 315 (324)
|+.++|.++|++|.+.|+.|+..+
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T 428 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVT 428 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHH
Confidence 555555555555555555555444
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-49 Score=359.72 Aligned_cols=274 Identities=15% Similarity=0.166 Sum_probs=244.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 038109 31 DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLI 110 (324)
Q Consensus 31 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li 110 (324)
..|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+++.|+++|++.|++++|.++|+.|.. +|..+||++|
T Consensus 220 ~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li 297 (697)
T PLN03081 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSML 297 (697)
T ss_pred CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHH
Confidence 44455555555555555555555555555555556666777788899999999999999999999965 6899999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 038109 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190 (324)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 190 (324)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++++|+++|+++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q 038109 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 191 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (324)
+|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.
T Consensus 378 ~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 378 DARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999964 69999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C-CCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhH
Q 038109 271 G-RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313 (324)
Q Consensus 271 ~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 313 (324)
+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+.
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~ 494 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTV 494 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCH
Confidence 5 699999999999999999999999999999876 445543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.3e-49 Score=366.44 Aligned_cols=310 Identities=14% Similarity=0.100 Sum_probs=291.0
Q ss_pred ccccCCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhh
Q 038109 3 LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82 (324)
Q Consensus 3 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 82 (324)
+++.+.+.|.+++|..+++.|... |+.||..||+.+|++|+..+++..+.+++..|.+.|+.||..+++.++.+|++
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~---g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWA---GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHc---CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc
Confidence 345566677777777777666544 68899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHH
Q 038109 83 LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 162 (324)
.|+++.|.++|++|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++.
T Consensus 235 ~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 235 CGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred CCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 9999999999999975 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 038109 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242 (324)
Q Consensus 163 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 242 (324)
.|.+.|+.||..+||+++.+|++.|++++|.++|++|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999964 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHHHHHhh
Q 038109 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321 (324)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 321 (324)
..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.++..++.++..|..
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888764
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-48 Score=361.79 Aligned_cols=297 Identities=15% Similarity=0.163 Sum_probs=240.8
Q ss_pred ccccCCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhh
Q 038109 3 LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS 82 (324)
Q Consensus 3 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 82 (324)
+++.+.+.|.+.+|..+++.|.. .|+.||..+|+.+|.+|++.|+++.+.+++..|.+.|+.||..+|+.++.+|++
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~---~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRE---LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH---cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 34455566777777666555544 458999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHH
Q 038109 83 LSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 162 (324)
.|++++|.++|++|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++
T Consensus 336 ~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 336 LGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred cCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999999975 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC------------------------------C--------
Q 038109 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK------------------------------L-------- 204 (324)
Q Consensus 163 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------------------------~-------- 204 (324)
.|.+.|+.|+..+||++|++|+++|++++|.++|++|.+.+ +
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~ 493 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLI 493 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHH
Confidence 99999999999999999999999999999988888775431 1
Q ss_pred ---------------------------------------------------------CCCHHHHHHHHHHHHhcCCHHHH
Q 038109 205 ---------------------------------------------------------GADARTYDALVLGACRAGRVEEA 227 (324)
Q Consensus 205 ---------------------------------------------------------~~~~~~~~~li~~~~~~g~~~~a 227 (324)
.||..+||++|.+|++.|+.++|
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHH
Confidence 23444555666666666666666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhC-CCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHH
Q 038109 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG-GRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304 (324)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (324)
.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. ..|+.|+..+|+.++.+|++.|++++|.+++++|
T Consensus 574 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 6666666666666666666666666666666666666666665 4566666666666666666666666666666666
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2e-22 Score=173.08 Aligned_cols=297 Identities=12% Similarity=0.022 Sum_probs=244.0
Q ss_pred CCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC---chhhHhhhhchhhhhh
Q 038109 9 TKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNT---ANTFNFITNTENSLSV 85 (324)
Q Consensus 9 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~ 85 (324)
..|.+++|...+..+.... +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 47 ~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred hcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456677777666666553 13456789999999999999999999999987532222 2467788999999999
Q ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCcHHHHHHH
Q 038109 86 LSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA----ITFHPILSVLTRGKRMEEAWGL 160 (324)
Q Consensus 86 ~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~ 160 (324)
++.|..+|+++.+..| +..+++.++..+.+.|++++|.+.++++.+.+..+.. ..+..+...+.+.|++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999987665 5668999999999999999999999999886543321 2455677788899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038109 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240 (324)
Q Consensus 161 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 240 (324)
++++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|.+.++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 99998764 33566788888999999999999999999998654433567899999999999999999999999875 4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhC---cCCHHHHHHHHHHHHhCCCchhHH
Q 038109 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG---LERFNEANFILKEMNKRDLKMGFK 314 (324)
Q Consensus 241 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 314 (324)
|+...+..+...+.+.|++++|..+++.+.+. .|+...++.++..+.. .|+.+++..++++|.++++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 66667788999999999999999999988875 5788889888887764 569999999999999988887665
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=4.6e-20 Score=158.44 Aligned_cols=259 Identities=17% Similarity=0.079 Sum_probs=218.5
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-C----HHHHHHHHHHHHccCC
Q 038109 44 AAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-R----KSAYDTLIGRLCKLKK 118 (324)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~----~~~~~~li~~~~~~~~ 118 (324)
.+...|++++|...|.++.+.+ +.+..++..+...+...|++++|...++.+.+..+ + ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4567899999999999999863 44567889999999999999999999999866432 1 2467889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhhHHH
Q 038109 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD----LTAYNYLLTAYCFKGNLTATSG 194 (324)
Q Consensus 119 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~ 194 (324)
+++|.++|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999875 334678899999999999999999999999988764332 2245667788899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCC
Q 038109 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274 (324)
Q Consensus 195 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (324)
.|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......++..+..+|...|++++|...++.+.+.
T Consensus 202 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 99999886543 567888899999999999999999999987543333567888999999999999999999998876
Q ss_pred CcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 275 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
.|+...+..++..+.+.|++++|..+++++.+.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 456667788999999999999999999998766
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=4.9e-19 Score=167.71 Aligned_cols=290 Identities=14% Similarity=0.040 Sum_probs=196.6
Q ss_pred CCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHH
Q 038109 9 TKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD 88 (324)
Q Consensus 9 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (324)
..|..++|...++.+.... +.+...|..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++
T Consensus 579 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA----PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 3455555555555443322 2345567777777777777777777777776542 3445566667777777777777
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC
Q 038109 89 LCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167 (324)
Q Consensus 89 a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 167 (324)
|...++++.+..| +..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|...++.+...
T Consensus 654 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 7777777766555 35567777777777777777777777776654 335566666777777777777777777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 038109 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247 (324)
Q Consensus 168 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 247 (324)
+ |+..++..+..++.+.|++++|.+.++.+.+..+. +...++.+...|...|++++|.+.|+++.+.. +++..++.
T Consensus 733 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 733 A--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred C--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4 34456666777777777777777777777766443 67777777777777888888888887777653 34566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCc
Q 038109 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310 (324)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 310 (324)
.+...+...|+ .+|..+++....... -++.++..+...+...|++++|.++++++.+.+..
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 77777777777 667777777666532 24556666777777778888888888887766543
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=4.5e-19 Score=167.94 Aligned_cols=287 Identities=10% Similarity=-0.011 Sum_probs=248.3
Q ss_pred CCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHH
Q 038109 8 PTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87 (324)
Q Consensus 8 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (324)
...|.+++|...+....... +.+...+..+...+.+.|++++|..+++++.+.. +.+..++..+...+...|+++
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ----PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34577788888777766554 2345668899999999999999999999998753 556788999999999999999
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 88 DLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 88 ~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
+|.++++.+.+..| +...+..+...+...|++++|.+.|+++.+.+ |+..++..+...+.+.|+.++|...++.+.+
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999987665 56688899999999999999999999999865 4557788899999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 038109 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246 (324)
Q Consensus 167 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 246 (324)
.. +.+...++.+...|...|++++|...|+++.+..+. +...++.+...+...|+ ++|+..+++..... +-+..++
T Consensus 765 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~ 840 (899)
T TIGR02917 765 TH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAIL 840 (899)
T ss_pred hC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHH
Confidence 64 457889999999999999999999999999988654 88999999999999999 88999999988653 2345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
..+...+...|++++|..+++.+.+.+.. ++.++..+...+.+.|+.++|.+++++|.+
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 77888899999999999999999998754 899999999999999999999999999863
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1.3e-16 Score=144.36 Aligned_cols=288 Identities=12% Similarity=-0.006 Sum_probs=174.8
Q ss_pred CccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHH
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 89 (324)
.|++++|...++.+..... .+...+..+...+...|+++.|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 89 ~g~~~~A~~~l~~~l~~~P----~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNV----CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHH
Confidence 4555555555555554441 112335555556666666666666666666531 33345556666666666666666
Q ss_pred HHHHHHHhcCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCC
Q 038109 90 CRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168 (324)
Q Consensus 90 ~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 168 (324)
...++.+....|+.. .+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|...+++..+..
T Consensus 164 ~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 164 ISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 666666644444322 33222 2356667777777776666554332333344444556667777777777777766654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhh----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 038109 169 VSPDLTAYNYLLTAYCFKGNLTA----TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244 (324)
Q Consensus 169 ~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 244 (324)
+.+...+..+...+...|++++ |...|++.....+. +...+..+...+.+.|++++|...+++...... .+..
T Consensus 243 -p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~ 319 (656)
T PRK15174 243 -LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPY 319 (656)
T ss_pred -CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH
Confidence 2345666667777777777764 67777777765443 566777777777777777777777777765431 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
.+..+..++.+.|++++|...++.+...... +...+..+..++...|+.++|...|++..+.
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5555667777777888877777777665322 2233333456677778888888777776544
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=9.5e-17 Score=145.19 Aligned_cols=295 Identities=11% Similarity=0.027 Sum_probs=237.7
Q ss_pred cccCCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhh
Q 038109 4 LRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83 (324)
Q Consensus 4 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 83 (324)
+.++...|++.+|..+++....... -.++ .+..+..+....|+++.|.+.++++.+.. +.+...+..+...+...
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p--~~~~--~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAK--NGRD--LLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCC--Cchh--HHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3455667888888888777776662 2222 35555566778999999999999998863 45567888889999999
Q ss_pred hhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHH
Q 038109 84 SVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162 (324)
Q Consensus 84 ~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 162 (324)
|++++|...++++....|+ ...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 9999999999999887775 568889999999999999999999988765433 33333333 34788999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 038109 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE----AFVLLRRMVDDG 238 (324)
Q Consensus 163 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~ 238 (324)
.+.+....++...+..+..++...|++++|...+++....... +...+..+...+...|++++ |...|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 9887654445555666678899999999999999999987654 68888889999999999986 899999988653
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 239 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
+.+...+..+...+...|++++|...++......+. +...+..+...+.+.|++++|...++++.+.+
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 235678888899999999999999999999887533 56677788999999999999999999988654
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.74 E-value=9.8e-15 Score=132.29 Aligned_cols=257 Identities=9% Similarity=-0.030 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHHhcC-CCC-CchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 038109 48 ERDLETVRYLLNKRARDC-CFN-TANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALR 124 (324)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~ 124 (324)
.+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...+++..+..|+ ...|..+...+...|++++|..
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 367899999999998754 223 4467888888899999999999999999888886 5588899999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 038109 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204 (324)
Q Consensus 125 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 204 (324)
.|++..+.. +-+..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|++..+..+
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999998763 2357888899999999999999999999998864 23567788888999999999999999999887644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCH
Q 038109 205 GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY------STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278 (324)
Q Consensus 205 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (324)
. +...|+.+...+...|++++|.+.|++........+. ..++.....+...|++++|..+++....... .+.
T Consensus 465 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~ 542 (615)
T TIGR00990 465 E-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECD 542 (615)
T ss_pred C-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcH
Confidence 3 6788999999999999999999999998765321111 1112222234456999999999999877653 345
Q ss_pred hHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 279 ELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
..+..+...+.+.|++++|.+.|++..+..
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 678889999999999999999999886543
No 14
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=2.9e-17 Score=134.29 Aligned_cols=260 Identities=18% Similarity=0.143 Sum_probs=114.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcC-CCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccC
Q 038109 40 DLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLK 117 (324)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~ 117 (324)
.+...+.+.|++++|+++++...... -+.+...|..+.......++.+.|...++++....+. ...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 55777889999999999997655543 2344556666777888899999999999999766553 4467777777 7999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 038109 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVL 196 (324)
Q Consensus 118 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~ 196 (324)
++++|.+++.+..+.. ++...+..++..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998876643 466777888999999999999999999977543 4567888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc
Q 038109 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276 (324)
Q Consensus 197 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (324)
++..+..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..+++...+.. +.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 999987554 68889999999999999999999998887654 4455677888999999999999999999988764 34
Q ss_pred CHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 277 DTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
|+.....+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 88899999999999999999999987653
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=8.8e-14 Score=126.11 Aligned_cols=289 Identities=13% Similarity=0.037 Sum_probs=221.7
Q ss_pred CCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHH
Q 038109 9 TKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD 88 (324)
Q Consensus 9 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (324)
..|.+++|...+...... .|+...|..+..++.+.|++++|.+.++..++.. +.+...+..+..++...|++++
T Consensus 139 ~~~~~~~Ai~~y~~al~~-----~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIEC-----KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HcCCHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 346677777777655433 3677789999999999999999999999988753 3445788888999999999999
Q ss_pred HHHHHHHHhcC------------------------------CC----CHHHHHHH-------------------------
Q 038109 89 LCRTLARLDKG------------------------------FP----RKSAYDTL------------------------- 109 (324)
Q Consensus 89 a~~~~~~~~~~------------------------------~p----~~~~~~~l------------------------- 109 (324)
|...+..+... .| ........
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 97655433111 01 10000000
Q ss_pred --HHHH------HccCCHHHHHHHHHHHHhCC-CCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038109 110 --IGRL------CKLKKIDEALRVVDIMAEGG-FGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179 (324)
Q Consensus 110 --i~~~------~~~~~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 179 (324)
+... ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++..+... .+...|..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~l 371 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKR 371 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHH
Confidence 0000 12357889999999998765 223 355677888888899999999999999887632 246688888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038109 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259 (324)
Q Consensus 180 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 259 (324)
...+...|++++|...|++..+.... +...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCH
Confidence 89999999999999999999887544 68889999999999999999999999988653 23456677788889999999
Q ss_pred HHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
++|...++...+.. +.++..++.+...+...|++++|.+.|++..+.
T Consensus 450 ~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 450 ASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 99999999987753 336788899999999999999999999997654
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.5e-13 Score=111.56 Aligned_cols=244 Identities=15% Similarity=0.146 Sum_probs=174.5
Q ss_pred CCCCchhhHhhhhchhhhhhHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 038109 66 CFNTANTFNFITNTENSLSVLSDLCRTLARLDK--GFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHP 143 (324)
Q Consensus 66 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 143 (324)
.+.+..++.++|.++++-...+.|.+++.+-.. +..+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence 355667888888888888888888888877643 3356777887776544332 2677788888888888888888
Q ss_pred HHHHHHccCcHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh-HHHHHHHHHH----CCCCC----CHHH
Q 038109 144 ILSVLTRGKRMEEA----WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA-TSGVLKKMEE----EKLGA----DART 210 (324)
Q Consensus 144 li~~~~~~~~~~~a----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~~----~~~~ 210 (324)
++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +..+| |..-
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 88888888876544 4567778888888888888888888888777644 3344444332 12222 3455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHH
Q 038109 211 YDALVLGACRAGRVEEAFVLLRRMVDDG----QSVL---YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGS 283 (324)
Q Consensus 211 ~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (324)
|...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....++....+....+++.|.-.-+.|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 6667777777778777777766554321 2232 23356677777888888888889999988878889999999
Q ss_pred HHHHHhCcCCHHHHHHHHHHHHhCCCchhH
Q 038109 284 LGSKLIGLERFNEANFILKEMNKRDLKMGF 313 (324)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 313 (324)
++++....|.++-.-+++..++..|-.-..
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 999999999999999999988887754433
No 17
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=3.3e-13 Score=115.53 Aligned_cols=282 Identities=11% Similarity=0.022 Sum_probs=211.7
Q ss_pred CccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhH--hhhhchhhhhhHH
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFN--FITNTENSLSVLS 87 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~ 87 (324)
.|++++|...+..-.... ..|. ..|-....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPV-VNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 366676665544422221 1222 22333344558999999999999999874 56664333 3367888999999
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHccCcHHHHHH
Q 038109 88 DLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA-------ITFHPILSVLTRGKRMEEAWG 159 (324)
Q Consensus 88 ~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~ 159 (324)
.|...++.+.+..|+ ......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999888884 568899999999999999999999999988765322 233344444445555666667
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038109 160 LMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239 (324)
Q Consensus 160 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 239 (324)
+++.+.+. .+.+......+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 77766443 3457788889999999999999999999998875 3444222 3444456699999999999988653
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 240 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
+-|...+..+-..|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234556778888999999999999999999885 5888998999999999999999999998754
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.68 E-value=6.6e-13 Score=128.21 Aligned_cols=186 Identities=10% Similarity=-0.020 Sum_probs=125.2
Q ss_pred CCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCc---hhhH-----------
Q 038109 9 TKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA---NTFN----------- 74 (324)
Q Consensus 9 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~----------- 74 (324)
..|++++|...++....... -+...+..+-.++.+.|++++|.+.|++..+.. |+. ..+.
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P----~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANP----KDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHH
Confidence 45666777776666555441 245667888888888888888888888887642 221 1111
Q ss_pred -hhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHH--------
Q 038109 75 -FITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI-------- 144 (324)
Q Consensus 75 -~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-------- 144 (324)
.....+.+.|++++|...++++.+..| +...+..+...+...|++++|++.|++..+.... +...+..+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 123456677888888888888877666 4557777888888888888888888888764321 22222222
Q ss_pred ----------------------------------HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 038109 145 ----------------------------------LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190 (324)
Q Consensus 145 ----------------------------------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 190 (324)
...+...|++++|...+++..+... -+...+..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 2233456778888888887776542 24566677777888888888
Q ss_pred hHHHHHHHHHHC
Q 038109 191 ATSGVLKKMEEE 202 (324)
Q Consensus 191 ~a~~~~~~m~~~ 202 (324)
+|...++++.+.
T Consensus 513 ~A~~~l~~al~~ 524 (1157)
T PRK11447 513 QADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHHHHc
Confidence 888888877654
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.67 E-value=5.8e-13 Score=128.63 Aligned_cols=289 Identities=12% Similarity=-0.013 Sum_probs=183.8
Q ss_pred CCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhh----------
Q 038109 9 TKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITN---------- 78 (324)
Q Consensus 9 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~---------- 78 (324)
+.|++++|...++....... .+...+..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDN----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHH
Confidence 45667777777777666642 344567778889999999999999999988752 223333333322
Q ss_pred --------------------------------chhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 038109 79 --------------------------------TENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRV 125 (324)
Q Consensus 79 --------------------------------~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~ 125 (324)
.+...|++++|.+.+++..+..|+ ...+..+...|.+.|++++|...
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 234567777888888877776674 44667777888888888888888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC--------------------------------------
Q 038109 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI-------------------------------------- 167 (324)
Q Consensus 126 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------------------------------------- 167 (324)
++++.+.... +...+..+...+...++.++|...++.+...
T Consensus 518 l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 8887764221 2332222222333344444444443332110
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 038109 168 -RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246 (324)
Q Consensus 168 -~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 246 (324)
..+++...+..+...+.+.|++++|...|++..+..+. +...+..++..|...|+.++|.+.++...+.. +.+..++
T Consensus 597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~ 674 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQ 674 (1157)
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHH
Confidence 01234445566677777777888888888777776444 56777777777878888888888887665432 1233445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCCCCC--c---CHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIK--L---DTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
..+..++...|++++|.++++.+...... | +...+..+...+...|+.++|.+.|++..
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55666777778888888888777654321 1 12345555667777788888888877764
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.67 E-value=3.8e-14 Score=119.93 Aligned_cols=262 Identities=12% Similarity=0.023 Sum_probs=171.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCc-hhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHc
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCK 115 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~ 115 (324)
|+.|-..+-..|+...|++-|++..+ +.|+- ..|-.|.+.|...+.+++|...+.+.....|+ ..++..+...|..
T Consensus 221 wsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 221 WSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE 298 (966)
T ss_pred ehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEec
Confidence 44444444555666666666655554 23332 45556666666666666666666665554453 3356666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 038109 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 195 (324)
.|++|.|+..|++..+.... -...|+.+..++-..|+..+|.+.+....... +......+.|...|...|.++.|..+
T Consensus 299 qG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred cccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHH
Confidence 67777777777776653221 24667777777777777777777777766653 22455667777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCC
Q 038109 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274 (324)
Q Consensus 196 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (324)
|....+-... -...+|.|...|-+.|++++|+..|++.. .++|+ ...|+.+-..|...|+++.|.+.+......++
T Consensus 377 y~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 377 YLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 7776654322 35667777777888888888888777766 35565 45667777777777888888887777766542
Q ss_pred CcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 275 KLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 275 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
. =...++.|...|-..|++.+|++-+++....
T Consensus 454 t-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 454 T-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred H-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 2 3456677788888888888888888776543
No 21
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=4.1e-13 Score=115.53 Aligned_cols=285 Identities=10% Similarity=-0.038 Sum_probs=203.2
Q ss_pred CccchhHHHHHHHHhhhcCCCCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCch--hhHhhhhchhhhhhH
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPDEPTSAY-YDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN--TFNFITNTENSLSVL 86 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~ 86 (324)
.|++++|.+.+...... .|++.. |-....+..+.|+++.|.+.+.+..+. .|+.. ........+...|++
T Consensus 97 ~g~~~~A~~~l~~~~~~-----~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH-----AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred CCCHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCH
Confidence 46777777777543333 244333 344456677889999999999998764 35543 333357788889999
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHH---HccCcHHHHHHHH
Q 038109 87 SDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFH-PILSVL---TRGKRMEEAWGLM 161 (324)
Q Consensus 87 ~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~~~~~~a~~~~ 161 (324)
+.|...++.+.+..| +..++..+...+...|++++|.+.+..+.+.+.. +...+. .-...+ ...+..+++...+
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999988888 5568899999999999999999999999998765 333232 111111 2222233333344
Q ss_pred HHHHhCCC---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038109 162 EVMKEIRV---SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART-YDALVLGACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 162 ~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~ 237 (324)
..+.+... +.+...+..+...+...|+.++|.+++++..+......... ...........++.+.+.+.++...+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44443321 23788888999999999999999999999998744322111 122222334467888899999887754
Q ss_pred CCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHH
Q 038109 238 GQSVLY---STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304 (324)
Q Consensus 238 ~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (324)
.|+. ....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3443 4556788889999999999999995444445688888999999999999999999999875
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=2.7e-13 Score=110.10 Aligned_cols=272 Identities=14% Similarity=0.130 Sum_probs=186.3
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHh--cCCCCHHHHHHH
Q 038109 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD--KGFPRKSAYDTL 109 (324)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~p~~~~~~~l 109 (324)
+.+..+|.++|.+.|+-...++|.+++++-.....+.+..+||.+|.+-.-... .+++.+|. +..||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 356678999999999999999999999999888788999999999876544333 56677774 344999999999
Q ss_pred HHHHHccCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHH-HHHHHHHHh----CCCCC----CHHHH
Q 038109 110 IGRLCKLKKIDE----ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA-WGLMEVMKE----IRVSP----DLTAY 176 (324)
Q Consensus 110 i~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~----~~~~~----~~~~~ 176 (324)
+++..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+. ..++.++.. ..++| |...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999997765 567788999999999999999999999999887553 334444332 22322 44556
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEK----LGADA---RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 249 (324)
...++.|.+..+.+.|.++..-+.... +.|+. .=|..+....|+....+.-...|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 677777877777777777665443221 12221 12344455555666666666666666555455555565556
Q ss_pred HHHHHhcCCHHHHHHHHHHhCCCC------------------------------------------------------CC
Q 038109 250 MGALLRLGYYAQAVKFVMVCGGRD------------------------------------------------------IK 275 (324)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~------------------------------------------------------~~ 275 (324)
+++....|.++-.-++|.++...| ..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 665555555554444444333222 11
Q ss_pred cCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 276 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
......+...-.+.+.|+.++|.++|.-+..+
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 23344556666778889999999999988443
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=1.6e-12 Score=120.24 Aligned_cols=294 Identities=11% Similarity=-0.004 Sum_probs=180.0
Q ss_pred CCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhH
Q 038109 7 LPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86 (324)
Q Consensus 7 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (324)
+...+++.+|..+++...... +.+...+..+...+...|++++|...+++..+. .+.+.. +..+..++...|+.
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLE----PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCH
Confidence 344566666666666555443 123444666777777888888888888887765 244445 77777777888888
Q ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHH----------------------------------------
Q 038109 87 SDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRV---------------------------------------- 125 (324)
Q Consensus 87 ~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~---------------------------------------- 125 (324)
++|...++++.+..|+ ...+..+...+...+..++|++.
T Consensus 133 ~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 133 WDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHH
Confidence 8888888888776664 33445555555555554444433
Q ss_pred ------HHHHHhC-CCCCChh-hHH----HHHHHHHccCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhhH
Q 038109 126 ------VDIMAEG-GFGLSAI-TFH----PILSVLTRGKRMEEAWGLMEVMKEIRVS-PDLTAYNYLLTAYCFKGNLTAT 192 (324)
Q Consensus 126 ------~~~m~~~-g~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a 192 (324)
++.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+. .-..+..+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 3333321 1112111 111 0122344567788888888887776532 221 112245677788888888
Q ss_pred HHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CcCH---HHHHHHHHHHHh
Q 038109 193 SGVLKKMEEEKLGA---DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ-----------SVLY---STYAHVMGALLR 255 (324)
Q Consensus 193 ~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~li~~~~~ 255 (324)
...|+++.+..... .......+..++...|++++|.++++.+..... .|+. ..+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 88888776543221 134455566677788888888888887765421 1231 234455667777
Q ss_pred cCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
.|+.++|+++++++.... +-+...+..+...+...|+.++|++.+++.....
T Consensus 372 ~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 372 SNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 788888888887776654 3356777777777777888888888888766543
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.64 E-value=3.1e-12 Score=119.29 Aligned_cols=265 Identities=10% Similarity=-0.047 Sum_probs=199.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038109 34 TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRL 113 (324)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~ 113 (324)
+...|..+-.++.. +++++|...+.+.... .|+......+...+...|++++|...++++....|+...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 45567766666665 7888899988877764 36654444445555688999999999998876666666677778888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 038109 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193 (324)
Q Consensus 114 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 193 (324)
.+.|+.++|.+.+++..+.. +.+...+..+.....+.|++++|...+++..+.. |+...+..+..++.+.|++++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998764 2233333333444456699999999999988754 67888889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC
Q 038109 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 194 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (324)
..|++.....+. +...++.+..++...|+.++|++.+++..+.. +-+...+..+..++...|++++|+..++...+..
T Consensus 630 ~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 630 SDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999887655 67788888889999999999999999888653 2346677888889999999999999999988764
Q ss_pred CCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 274 IKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 274 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
.. +..+.........+..+++.|.+-+++--..
T Consensus 708 P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 708 DN-QALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred CC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 32 3344445566666677777777766655433
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=2.8e-15 Score=122.64 Aligned_cols=258 Identities=15% Similarity=0.040 Sum_probs=113.4
Q ss_pred cCCCCccchhHHHHHH-HHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhh
Q 038109 6 KLPTKFLIPQSVLVTR-SFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84 (324)
Q Consensus 6 ~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 84 (324)
.+-..|.+++|++++. ...... ...+...|..+...+...++++.|.+.++++...+ +.++..+..++.. ...+
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~---~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIA---PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 3445677777777763 333321 12233446666667778999999999999998765 3356677777777 7999
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 038109 85 VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGG-FGLSAITFHPILSVLTRGKRMEEAWGLMEV 163 (324)
Q Consensus 85 ~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 163 (324)
++++|.++++...+..++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998876666777788889999999999999999999987643 345778888899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 038109 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243 (324)
Q Consensus 164 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 243 (324)
..+... .|....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|...|++..+.. +.|.
T Consensus 172 al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 172 ALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 988642 257788899999999999999999998887764 3366678899999999999999999999988643 3477
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 244 STYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
.+...+..++...|+.++|.++......
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 8888899999999999999998876543
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.63 E-value=4.5e-12 Score=118.27 Aligned_cols=290 Identities=11% Similarity=-0.043 Sum_probs=212.6
Q ss_pred CccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCC---HHHHHHH----------------------HHHHHhc
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERD---LETVRYL----------------------LNKRARD 64 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~----------------------~~~m~~~ 64 (324)
.|+..+|..+++-..... ....++....+.++..+.+.+. ..++..+ .+.....
T Consensus 389 ~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQ-GDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred cccHHHHHHHHHHhcCCC-cccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 455566666655554432 2233455566677777777655 3333222 1111111
Q ss_pred -CC-CC--CchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhh
Q 038109 65 -CC-FN--TANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT 140 (324)
Q Consensus 65 -~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 140 (324)
+. ++ +...|..+..++.. ++.++|...+.+.....|+......+...+...|++++|...|+++... +|+...
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a 544 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNED 544 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHH
Confidence 11 33 55677777777776 7888899988888777787554444555667899999999999998654 344455
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038109 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220 (324)
Q Consensus 141 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 220 (324)
+..+...+.+.|+.++|...+++..+.+ +++...+..+.......|++++|...+++..+.. |+...|..+..++.+
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 6677788899999999999999998865 2233344444445556699999999999998764 578889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHH
Q 038109 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300 (324)
Q Consensus 221 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (324)
.|+.++|...+++..... +-+...+..+..++...|++++|...++...+..+ -++..+..+..++...|++++|...
T Consensus 622 lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 622 RHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999988753 23456677777789999999999999999988754 3778889999999999999999999
Q ss_pred HHHHHhCC
Q 038109 301 LKEMNKRD 308 (324)
Q Consensus 301 ~~~m~~~~ 308 (324)
+++..+..
T Consensus 700 l~~Al~l~ 707 (987)
T PRK09782 700 ARLVIDDI 707 (987)
T ss_pred HHHHHhcC
Confidence 99987544
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.61 E-value=4.5e-13 Score=113.60 Aligned_cols=290 Identities=14% Similarity=0.043 Sum_probs=209.8
Q ss_pred cCCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--------------------
Q 038109 6 KLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDC-------------------- 65 (324)
Q Consensus 6 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------------- 65 (324)
.+.++|.+.+|+..++..-+... -.+..|-.+..++...|+.+.|.+.|.+.++-+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p----~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKP----KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCc----hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhccc
Confidence 34567777777777777666552 123345555555555555555555555544321
Q ss_pred ------------CCCC-chhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038109 66 ------------CFNT-ANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAE 131 (324)
Q Consensus 66 ------------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 131 (324)
..|. ...|+.|...+-..|+...|..-|++..+..|+ ..+|-.|...|...+.+++|...|.+...
T Consensus 201 ~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred chhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 1122 234555555566667777777777777666665 34677777777777777777777777665
Q ss_pred CCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH
Q 038109 132 GGFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD-LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR 209 (324)
Q Consensus 132 ~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 209 (324)
. .| ...++..+...|...|.++.|...+++..+. .|+ ...|+.+..++-..|++.+|.+.|.+....... ...
T Consensus 281 l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-had 355 (966)
T KOG4626|consen 281 L--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HAD 355 (966)
T ss_pred c--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHH
Confidence 3 23 3456666666777888888898888888775 344 578999999999999999999999988887544 577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcC-HhHHHHHHHH
Q 038109 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD-TELFGSLGSK 287 (324)
Q Consensus 210 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 287 (324)
..+.|...|...|.+++|..+|....+- .|. ...++.|...|.++|++++|...+++..+. +|+ ...|+.+...
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchH
Confidence 8888999999999999999999887753 344 456788999999999999999999998874 454 5678889999
Q ss_pred HhCcCCHHHHHHHHHHHHhCC
Q 038109 288 LIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~~ 308 (324)
|-..|+++.|.+.+.+.+.-+
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcC
Confidence 999999999999998776543
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.60 E-value=1.3e-11 Score=114.38 Aligned_cols=290 Identities=11% Similarity=0.023 Sum_probs=201.9
Q ss_pred CccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHH
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 89 (324)
.|+..+|..++...... ...+...+..+...+...|++++|.+++++..+. -+.+...+..+..++...|+.++|
T Consensus 28 ~g~~~~A~~~~~~~~~~----~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 28 AGQDAEVITVYNRYRVH----MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred cCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34556666555544431 2344556899999999999999999999998875 245567777888899999999999
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHH---------
Q 038109 90 CRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG--------- 159 (324)
Q Consensus 90 ~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~--------- 159 (324)
...++++.+..| +.. +..+...+...|+.++|+..++++.+.... +...+..+...+...+..++|..
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p 180 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTP 180 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCH
Confidence 999999988777 455 888899999999999999999999986433 44555555666655555554443
Q ss_pred -------------------------------------HHHHHHhC-CCCCCHH-HH----HHHHHHHHhcCChhhHHHHH
Q 038109 160 -------------------------------------LMEVMKEI-RVSPDLT-AY----NYLLTAYCFKGNLTATSGVL 196 (324)
Q Consensus 160 -------------------------------------~~~~m~~~-~~~~~~~-~~----~~li~~~~~~~~~~~a~~~~ 196 (324)
.++.+.+. ...|+.. .+ ...+.++...|++++|...|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33344322 1122211 11 11133455778899999999
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 197 KKMEEEKLG-ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV---LYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 197 ~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
+.+.+.+.. |+. .-..+..+|...|++++|+..|+++....... .......+..++...|++++|..+++.+...
T Consensus 261 ~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 261 QRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 998887642 332 22224678889999999999999887543111 1344566677788999999999999888765
Q ss_pred CC-----------CcC---HhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 273 DI-----------KLD---TELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 273 ~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
.. .|+ ...+..+...+...|+.++|+++++++...
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 31 122 224456677888889999999999988654
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.59 E-value=3.6e-11 Score=110.17 Aligned_cols=90 Identities=12% Similarity=0.008 Sum_probs=56.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHH
Q 038109 42 VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDE 121 (324)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 121 (324)
...+...|++++|.++++++.+.. +.++..+..++..+...++.++|.+.++.+....|+...+-.++..+...++..+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHH
Confidence 445666677777777777776652 3344555566666777777777777777776666665555444444444555555
Q ss_pred HHHHHHHHHhC
Q 038109 122 ALRVVDIMAEG 132 (324)
Q Consensus 122 a~~~~~~m~~~ 132 (324)
|++.++++.+.
T Consensus 188 AL~~~ekll~~ 198 (822)
T PRK14574 188 ALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=1.5e-11 Score=105.36 Aligned_cols=253 Identities=12% Similarity=0.020 Sum_probs=195.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCchhhHhh-hhchhhhhhHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHccCCHHHHH
Q 038109 47 HERDLETVRYLLNKRARDCCFNTANTFNFI-TNTENSLSVLSDLCRTLARLDKGFPRKSAYD--TLIGRLCKLKKIDEAL 123 (324)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~ 123 (324)
..|+++.|.+......+. .+++..+..+ .....+.|+++.+...+.++.+..|+..... .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 369999999888776554 2233333333 4455889999999999999988778765333 3467889999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhhHHHHH
Q 038109 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL-------TAYNYLLTAYCFKGNLTATSGVL 196 (324)
Q Consensus 124 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~ 196 (324)
+.++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999987533 6788899999999999999999999999998755332 23344444444555667777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc
Q 038109 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276 (324)
Q Consensus 197 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (324)
+.+.+.- +.+......+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+..+ -
T Consensus 253 ~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~ 326 (398)
T PRK10747 253 KNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-D 326 (398)
T ss_pred HhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-C
Confidence 7765542 347888999999999999999999999998874 4555322 34455566999999999999888753 3
Q ss_pred CHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 277 DTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
|+..+..+...+.+.|++++|.+.|+...+..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 77778899999999999999999999998664
No 31
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=3.6e-11 Score=97.10 Aligned_cols=284 Identities=11% Similarity=0.031 Sum_probs=222.6
Q ss_pred CccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHH
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 89 (324)
.|++.+|...+..-.++. ..|. ..|-.-..+.-+.|+.+.+.+.+.+..+.--.++....-.........|+.+.|
T Consensus 97 eG~~~qAEkl~~rnae~~---e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG---EQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhcC---cchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 577888888877755555 3443 346677777888999999999999888753345555666677788889999999
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHccCcHHHHHHHH
Q 038109 90 CRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA-------ITFHPILSVLTRGKRMEEAWGLM 161 (324)
Q Consensus 90 ~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~ 161 (324)
..-++.+.+..| ..........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-...|
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999987777 5668899999999999999999999999999876443 57777777777767666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 038109 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD-GQS 240 (324)
Q Consensus 162 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~ 240 (324)
++..+. ...+...-.+++.-+.++|+.++|.++.++..+.+..|. -...-.+.+-++.+.-++..+.-.+. +..
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 665443 344566667788889999999999999999988877666 22233456778877777777765543 444
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 241 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
| ..+..|-..|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++.++-.-
T Consensus 328 p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 P--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred h--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5 67778889999999999999999987775 68999999999999999999999999988763
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=5e-12 Score=108.06 Aligned_cols=267 Identities=14% Similarity=0.022 Sum_probs=191.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--CCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 038109 36 AYYDDLVNAAGHERDLETVRYLLNKRARDC--CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGR 112 (324)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~ 112 (324)
.....+-.+|...+++++|.++|+...+.. ...+..+|...+-.+-+.-... -+-..+.+..| ...+|.++.+.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~Laq~Li~~~~~sPesWca~GNc 430 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YLAQDLIDTDPNSPESWCALGNC 430 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HHHHHHHhhCCCCcHHHHHhcch
Confidence 444555556666666666666666665431 1223344544443322211111 11122222234 45589999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCh
Q 038109 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN---YLLTAYCFKGNL 189 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~li~~~~~~~~~ 189 (324)
|.-+++.+.|++.|++..+-... ..++|+.+-.-+.....+|+|...|...... |...|| -+...|.+.+++
T Consensus 431 fSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhhhhheeccchh
Confidence 99999999999999999874322 6788888888888889999999999887653 444554 456778999999
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 190 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
+.|+-.|++..+-++. +.+....+...+.+.|+.|+|++++++......+ |+.+--.-...+...++.++|+..++++
T Consensus 506 e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred hHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999999999887766 7777778888899999999999999998865432 3333334566678889999999999999
Q ss_pred CCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhH
Q 038109 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313 (324)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 313 (324)
++.- +-+...|..+...|.+.|+.+.|+.-|.-+.+.+-+..+
T Consensus 584 k~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 584 KELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 8863 336777888889999999999999999888777666655
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=2.1e-11 Score=95.76 Aligned_cols=262 Identities=13% Similarity=0.064 Sum_probs=121.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCCc------hhhHhhhhchhhhhhHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q 038109 40 DLVNAAGHERDLETVRYLLNKRARDCCFNTA------NTFNFITNTENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGR 112 (324)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~li~~ 112 (324)
+|=+.|-+.|..++|+++++.+.++ ||. ...-.|..-|...|-+|.|+.+|..+.+. .--..+...|+..
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~I 150 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNI 150 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 3334444555555555555555442 221 11223344445555555555555555331 1122344455555
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038109 113 LCKLKKIDEALRVVDIMAEGGFGLS----AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 188 (324)
|-...+|++|+++-+++.+.|-.+. ...|.-+...+....+.+.|...+++..+.+.+ .+..--.+.+.+...|+
T Consensus 151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGD 229 (389)
T ss_pred HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccc
Confidence 5555555555555555554432221 122333333334444555555555554443211 22222233445555556
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038109 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (324)
++.|.+.++...+.++.--..+...|..+|.+.|+.++....+..+.+....++ .-..+-+......-.+.|...+.+
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHH
Confidence 666666665555554443344555555566666666666555555554322222 222233333333344444444433
Q ss_pred hCCCCCCcCHhHHHHHHHHHhC---cCCHHHHHHHHHHHHhCCC
Q 038109 269 CGGRDIKLDTELFGSLGSKLIG---LERFNEANFILKEMNKRDL 309 (324)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~ 309 (324)
-... +|+...+..++..-.. -|...+...+++.|....+
T Consensus 308 Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 308 QLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 3332 4566666666654432 2445556666666654433
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=5.8e-13 Score=116.90 Aligned_cols=91 Identities=10% Similarity=0.036 Sum_probs=78.9
Q ss_pred HHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCC
Q 038109 21 RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF 100 (324)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 100 (324)
+++..+...|+.|+..||.++|.-||..|+.+.|- +|.-|.-+..+.+...|+.++......++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 34455566679999999999999999999999998 9999988888888899999999999988887765 3
Q ss_pred CCHHHHHHHHHHHHccCCHHH
Q 038109 101 PRKSAYDTLIGRLCKLKKIDE 121 (324)
Q Consensus 101 p~~~~~~~li~~~~~~~~~~~ 121 (324)
|...+|..|..+|...||+..
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH
Confidence 788899999999999999866
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=3e-11 Score=104.09 Aligned_cols=272 Identities=11% Similarity=-0.074 Sum_probs=194.3
Q ss_pred HHHHHHH--hcCCCHHHHHHHHHHHHhcCCCCCchh-hHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH--HHHHHHHHH
Q 038109 39 DDLVNAA--GHERDLETVRYLLNKRARDCCFNTANT-FNFITNTENSLSVLSDLCRTLARLDKGFPRKS--AYDTLIGRL 113 (324)
Q Consensus 39 ~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~li~~~ 113 (324)
..+..+. ...|+++.|.+.+....+. .|++.. +-....+....|+.+.+.+.+.+..+..|+.. ..-.....+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 3344443 4689999999999887664 455433 33446777888999999999999877777653 444468889
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCChh
Q 038109 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY---CFKGNLT 190 (324)
Q Consensus 114 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~~~~~ 190 (324)
...|+++.|.+.++.+.+.... +..++..+...+...|++++|.+.+..+.+.+..+.......-..++ ...+..+
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999997633 67788899999999999999999999999987643332212222222 2233333
Q ss_pred hHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH--H-HHHHHHHHhcCCHHHHHH
Q 038109 191 ATSGVLKKMEEEKLG---ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST--Y-AHVMGALLRLGYYAQAVK 264 (324)
Q Consensus 191 ~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~-~~li~~~~~~g~~~~a~~ 264 (324)
++.+.+..+.+..+. .+...+..+...+...|+.++|.+++++..+.. |+... + ....-.....++.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHH
Confidence 334455555444221 278899999999999999999999999998753 44331 1 112222344578888999
Q ss_pred HHHHhCCCCCCcCH--hHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHH
Q 038109 265 FVMVCGGRDIKLDT--ELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLR 316 (324)
Q Consensus 265 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 316 (324)
.++...+..+ -|+ ....++...+.+.|++++|.+.|+........|++...
T Consensus 321 ~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 321 LIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred HHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 8888777532 245 66778999999999999999999965555555655543
No 36
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=3.5e-14 Score=83.10 Aligned_cols=48 Identities=35% Similarity=0.595 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038109 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253 (324)
Q Consensus 206 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 253 (324)
||..+||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
No 37
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=3.5e-14 Score=83.09 Aligned_cols=50 Identities=32% Similarity=0.741 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038109 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220 (324)
Q Consensus 171 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 220 (324)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888874
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=3e-12 Score=109.40 Aligned_cols=256 Identities=15% Similarity=0.039 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHccCCHHHHHHH
Q 038109 50 DLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP----RKSAYDTLIGRLCKLKKIDEALRV 125 (324)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~~a~~~ 125 (324)
+..+|...|.....+ +.-+......+.++|...+++++++++|+.+.+..| +..+|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 567889999885544 445557778899999999999999999999987765 566888877544322 12222
Q ss_pred H-HHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 038109 126 V-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP-DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 126 ~-~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 203 (324)
+ +.+.+. -+-.+.+|.++.++|.-.++++.|++.|++..+.. | ...+|+.+..=+.....+|.|...|+......
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2 233332 22367899999999999999999999999998854 4 67888888888899999999999999887653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHH
Q 038109 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFG 282 (324)
Q Consensus 204 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (324)
.. +-..|--+.-.|.+.++++.|+-.|++..+- .| +......+...+.+.|+.++|+.++++......+ |+..--
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 33 4445555778899999999999999988754 44 4556667777889999999999999999887655 555555
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHHHHH
Q 038109 283 SLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYY 319 (324)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 319 (324)
.-+..+...+++++|++.++++++ +.|+.+.+.++
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~l 596 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFAL 596 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHH
Confidence 567778888999999999999984 56655554443
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.6e-10 Score=90.93 Aligned_cols=256 Identities=14% Similarity=0.065 Sum_probs=201.6
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCC--C---CHHHHHHHHHHHHccCCHH
Q 038109 46 GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF--P---RKSAYDTLIGRLCKLKKID 120 (324)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p---~~~~~~~li~~~~~~~~~~ 120 (324)
.-+++.++|.+.|-+|.+. -+.+..+.-+|.+.|.+.|.++.|+++...+.+.. + ...+...|..-|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3467899999999999884 24455677789999999999999999999986553 1 1225667889999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhhHHHHH
Q 038109 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD----LTAYNYLLTAYCFKGNLTATSGVL 196 (324)
Q Consensus 121 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~ 196 (324)
.|+.+|..+.+.|.- -......|+..|-...+|++|.++-+++.+.+..+. ...|--+...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999999986543 456778899999999999999999999998876654 345677788888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc
Q 038109 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276 (324)
Q Consensus 197 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (324)
.+..+.+.+ .+..--.+-+.....|+++.|.+.++...+.+...-..+...|..+|.+.|+.++....+..+.+...
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-- 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-- 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 999887555 55555667788999999999999999999887666678888999999999999999999988877533
Q ss_pred CHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 277 DTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
....-..+.+.-....-.+.|..++.+-..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 333333444444444455666666555443
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.51 E-value=1.6e-10 Score=105.90 Aligned_cols=288 Identities=10% Similarity=-0.027 Sum_probs=201.1
Q ss_pred CCccchhHHHHHHHHhhhcCCCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhH
Q 038109 9 TKFLIPQSVLVTRSFTKSGAFPDEPTS--AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86 (324)
Q Consensus 9 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (324)
+.|....|...+....... |+. ..+ .++..+...|+.++|+..+++.... .+........+...+...|++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~-----P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG-----PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC-----ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 3455566666555554444 432 233 7788888889999999999988721 122223333335678888999
Q ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 038109 87 SDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 87 ~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 165 (324)
++|.++++++.+..|+ ...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999888874 557778889999999999999999999875 3455555444444444566666999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhhHHHH------------------------------------------------HH
Q 038109 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGV------------------------------------------------LK 197 (324)
Q Consensus 166 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~------------------------------------------------~~ 197 (324)
+.. +-+...+..++.+..+.|-...|.++ ++
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 874 22455556666666666543333322 22
Q ss_pred HHHHC-CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 198 KMEEE-KLGADA-RTY----DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 198 ~m~~~-~~~~~~-~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
.+... +..|.. ..| -=.+.++...|+..++++.|+.+...|.+....+-..+.++|...+++++|..++..+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 22221 111321 111 224566778899999999999999888654445778899999999999999999999865
Q ss_pred CC-----CCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 272 RD-----IKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 272 ~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.. ..++......|..+|...+++++|..+++++.+
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 43 123444467899999999999999999999987
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=3.2e-11 Score=95.80 Aligned_cols=197 Identities=14% Similarity=0.043 Sum_probs=108.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 44555555556666666666666555432 12344555555555566666666666665555432 23445555555666
Q ss_pred hcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGA-DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 263 (324)
..|++++|.+.+++..+....+ ....+..+...+...|++++|.+.+++...... .+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666655432111 234455555566666666666666666554321 23345555566666666666666
Q ss_pred HHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
.+++...+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666665554 23344555555566666666666666665554
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=8.8e-11 Score=93.24 Aligned_cols=201 Identities=12% Similarity=-0.029 Sum_probs=168.4
Q ss_pred CCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038109 68 NTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146 (324)
Q Consensus 68 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 146 (324)
.....+..+...+...|++++|...+++..+..|+ ...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 34567788889999999999999999998776664 56888899999999999999999999988643 35667888888
Q ss_pred HHHccCcHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 038109 147 VLTRGKRMEEAWGLMEVMKEIRV-SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225 (324)
Q Consensus 147 ~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 225 (324)
.+...|++++|...+++...... ......+..+..++...|++++|...+++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999887532 224556777888999999999999999999887544 5778888999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 226 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
+|.+.+++.... ...+...+..+...+...|+.+.|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999998876 334566777788888899999999998877654
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=6.4e-11 Score=105.85 Aligned_cols=265 Identities=9% Similarity=-0.072 Sum_probs=177.2
Q ss_pred CCHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHhcCCCCC-chhhHhhhhchh---------hhhhHHHHHHHHHHHh
Q 038109 33 PTSAYYDDLVNAAGH-----ERDLETVRYLLNKRARDCCFNT-ANTFNFITNTEN---------SLSVLSDLCRTLARLD 97 (324)
Q Consensus 33 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 97 (324)
.+...|...+.+-.. .+++++|.+.|++..+. .|+ ...|..+..++. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 444556666665422 23467899999988875 344 345555544433 3355889999999988
Q ss_pred cCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHH
Q 038109 98 KGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176 (324)
Q Consensus 98 ~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 176 (324)
+..| +..++..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|...+++..+.... +...+
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 8777 456888888888899999999999999988642 25667788888899999999999999998886533 22233
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHh
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST-YAHVMGALLR 255 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~ 255 (324)
..++..+...|++++|...+++......+-+...+..+..++...|+.++|...++++... .|+..+ .+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 3445556678899999999988876543224556777888888999999999999887643 344333 3444455666
Q ss_pred cCCHHHHHHHHHHhCCCC-CCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 256 LGYYAQAVKFVMVCGGRD-IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
.| +.|...++.+.+.. -.+....+ +-..|.-.|+-+.+..+ +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 46666665554421 11222222 33334445666666655 7776654
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=1.5e-10 Score=103.49 Aligned_cols=218 Identities=11% Similarity=-0.060 Sum_probs=164.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH---------ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 038109 83 LSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLC---------KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK 152 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~p~~-~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 152 (324)
.+..++|...|++..+..|+. ..|..+..++. ..+++++|...+++..+.... +...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 356789999999998888854 46666655443 234589999999999986433 6777888888889999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232 (324)
Q Consensus 153 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 232 (324)
++++|...+++..+.+ +.+...+..+..++...|++++|...+++..+..+. +...+..+...+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999998875 235677888899999999999999999999987655 33334445555777899999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 233 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
+......+-+...+..+..++...|+.++|...+..+.... ..+....+.+...|...| ++|...++++.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98765322234446667778889999999999998876652 223444555666777777 477777777654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=9.2e-11 Score=96.46 Aligned_cols=254 Identities=12% Similarity=0.012 Sum_probs=198.9
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHccCCH
Q 038109 44 AAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP----RKSAYDTLIGRLCKLKKI 119 (324)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~ 119 (324)
++......+++.+-.......|++.+...-+....+.-...++++|+..|+++.+..| |..+|+.++-.-....++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444556777777777777778777776666667777788899999999999987765 566777766443322211
Q ss_pred -HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 038109 120 -DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198 (324)
Q Consensus 120 -~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 198 (324)
-.|..+++ . ... -+.|+.++.+-|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-++.
T Consensus 316 s~LA~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 SYLAQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 12222221 1 112 3467788888888999999999999999987532 567888888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCH
Q 038109 199 MEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278 (324)
Q Consensus 199 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (324)
..+-++. |-..|-.|-.+|.-.+...-|+-.|++..+-. +-|...|.+|-..|.+.++.++|.+.|......|- .+.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cch
Confidence 9988766 89999999999999999999999999987643 24678899999999999999999999999888763 366
Q ss_pred hHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
..+..|...|-+.++.++|.+.+++-.+
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8899999999999999999999887654
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.2e-10 Score=92.69 Aligned_cols=272 Identities=15% Similarity=0.069 Sum_probs=190.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--CCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHH
Q 038109 30 PDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCC--FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYD 107 (324)
Q Consensus 30 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 107 (324)
|+.-+...-+....+.-...++++|..+|++..+..- ..|..+|+.++-+-.....+.-.-.....+.+ -.+.|..
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK--yR~ETCC 334 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK--YRPETCC 334 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc--CCcccee
Confidence 3444433333333344567899999999999988631 23446666665543333332222222222222 2344677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038109 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187 (324)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 187 (324)
.+.+-|.-.++.++|...|++..+-+.. ....|+.+..-|....+...|...+....+.. +.|-..|-.+.++|.-.+
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhc
Confidence 7788888888899999999988875433 46778888888999999999999999888764 347788888999999999
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267 (324)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 267 (324)
...-|+-.|++.....+. |...|.+|..+|.+.++.++|++.|+.....|- .+...+..|.+.|-+.++..+|...+.
T Consensus 413 Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred chHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999988876544 788999999999999999999999988887654 356778888899999999988888775
Q ss_pred HhCC----CCCCcC--HhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 268 VCGG----RDIKLD--TELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 268 ~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
...+ .|...+ ....--|..-+.+.+++++|..+.......
T Consensus 491 k~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 491 KYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 5433 232222 222223556677888888888777665443
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.9e-11 Score=96.28 Aligned_cols=230 Identities=11% Similarity=0.107 Sum_probs=195.2
Q ss_pred HhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCc
Q 038109 74 NFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153 (324)
Q Consensus 74 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 153 (324)
+.+.++|.+.|-+.+|++.+....+..|-+.||-.|-+.|.+..+...|+.++.+-.+. ++-++....-+.+.+-..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 56789999999999999999999888899999999999999999999999999888775 44444444556677778899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038109 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233 (324)
Q Consensus 154 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 233 (324)
.++|.++++...+.. +.++....++...|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+++|-++.-|++
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 999999999988874 347777778888899999999999999999999998 999999999999999999999999998
Q ss_pred HHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 234 MVDDGQSVL--YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 234 m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
....--.|+ ...|-.+-......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++.....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 876544444 344555777778889999999999998887643 6788999988889999999999999976543
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=5.5e-11 Score=93.72 Aligned_cols=229 Identities=9% Similarity=0.017 Sum_probs=196.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHccC
Q 038109 39 DDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAY-DTLIGRLCKLK 117 (324)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~li~~~~~~~ 117 (324)
+.+-++|.+.|-+.+|.+.++..++. .|-+.||-.|-++|.+......|..++.+-.+.+|-.+|| .-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 56777888999999999999988875 6888999999999999999999999999998889977766 45778888899
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 038109 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197 (324)
Q Consensus 118 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 197 (324)
+.++|.++|+...+... .++.....+...|.-.++++.|.+.+.++.+.|+. +...|+.+.-+|.-.++++-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999987633 36777777888899999999999999999999986 78889999999999999999999999
Q ss_pred HHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 198 KMEEEKLGAD--ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 198 ~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
+....--.|+ ...|-.+-...+..|++..|.+.|+-...... -+...++.|.-.-.+.|+++.|..+++.....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8876544444 45688888888899999999999998876543 45678888888889999999999999887664
No 49
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=1.5e-09 Score=94.52 Aligned_cols=288 Identities=12% Similarity=0.024 Sum_probs=198.3
Q ss_pred CCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHh-hhhchh----
Q 038109 7 LPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNF-ITNTEN---- 81 (324)
Q Consensus 7 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~---- 81 (324)
+.+.|..++|+..+..-... +.-....+......+.+.|+.++|..+|..+++.+ |+...|.. +..+..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567777777766443222 22334456777778889999999999999999875 55554444 444431
Q ss_pred -hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHH
Q 038109 82 -SLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKI-DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWG 159 (324)
Q Consensus 82 -~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 159 (324)
.....+....+++++...+|...+...+.-.+.....+ ..+...+..+...|+| .+|+.+-..|.......-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 12356777888888887777655444443333322223 3455666777788876 456666666766655555666
Q ss_pred HHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038109 160 LMEVMKEI----R----------VSPDL--TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223 (324)
Q Consensus 160 ~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 223 (324)
++...... + -+|+. .++.-+...|...|++++|++++++..+..+. .+..|..-...+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 66655432 1 12344 35566678888999999999999998887443 47889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhH--------HHHHHHHHhCcCCHH
Q 038109 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL--------FGSLGSKLIGLERFN 295 (324)
Q Consensus 224 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~ 295 (324)
+++|.+.++..+.... -|...=+-.+..+.+.|++++|.+++....+.+..|-... ......+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999887653 4566666678889999999999999988877664433222 234467888999999
Q ss_pred HHHHHHHHHH
Q 038109 296 EANFILKEMN 305 (324)
Q Consensus 296 ~a~~~~~~m~ 305 (324)
.|++.|..+.
T Consensus 323 ~ALk~~~~v~ 332 (517)
T PF12569_consen 323 LALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHH
Confidence 9988777664
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=4.6e-09 Score=86.66 Aligned_cols=278 Identities=13% Similarity=-0.000 Sum_probs=199.4
Q ss_pred CCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhh
Q 038109 7 LPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGH-ERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV 85 (324)
Q Consensus 7 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 85 (324)
+.+.|.+.+|++++.+|+..... ..+...-|.-+-.|.+ -.++..|.+.-+..+... .-++.....-.+.....|+
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk--~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNK--TASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccch--hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 45677888999999999887632 2222222222222333 346777777766655432 2344444444556677899
Q ss_pred HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 038109 86 LSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164 (324)
Q Consensus 86 ~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 164 (324)
++.|.+.+.+......+ ....-.+.-.+-..|++++|+..|-++... +.-+..+.-.+.+.|-...+...|.+++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999888654322 222222334566788999999999877543 2236677777788888888999998888776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 038109 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244 (324)
Q Consensus 165 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 244 (324)
... ++.|....+-|...|-+.|+-.+|.+.+-+--+. ++-+..+...|...|....-+++++..|++.. =++|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHH
Confidence 554 5667888899999999999999998876554443 34478888999999999999999999998764 4689999
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCC
Q 038109 245 TYAHVMGALL-RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293 (324)
Q Consensus 245 ~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 293 (324)
-|..++..|. +.|++.+|..+++...+. ++-|......|++.+...|-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9988887655 679999999999998765 66688888888888887764
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.31 E-value=1.8e-08 Score=89.53 Aligned_cols=187 Identities=9% Similarity=-0.033 Sum_probs=115.8
Q ss_pred CccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHH
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 89 (324)
+|+.++|..++...-........ .|..|-..|-+.|+.+++...+-..-.. .+.|...|..+.....+.|.++.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~----ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPI----AYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchh----hHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHH
Confidence 46677777766665555533333 3788888888888888887776443332 344556777777777777888888
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHccCcHHHHHHHHHHH
Q 038109 90 CRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITF----HPILSVLTRGKRMEEAWGLMEVM 164 (324)
Q Consensus 90 ~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m 164 (324)
.-.|.+..+..| +...+---+..|-+.|+...|...|.++.+...+.|..-+ -..++.+...++.+.|.+.++..
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888877766655 3344444456777778888888877777765332232222 22344455566667777666665
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 038109 165 KEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201 (324)
Q Consensus 165 ~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 201 (324)
...+ -..+...+++++..+.+...++.|......+..
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 5421 223445566666677777777766666655544
No 52
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=5.3e-09 Score=91.11 Aligned_cols=265 Identities=14% Similarity=0.085 Sum_probs=192.6
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHcc-----C
Q 038109 44 AAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAY-DTLIGRLCKL-----K 117 (324)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~li~~~~~~-----~ 117 (324)
.+...|++++|++.++.-... +.............+.+.|+.++|..++..+.+..|+...| ..+..+.... .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 368889999999999875554 44445667778899999999999999999999989977755 4455555222 3
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 038109 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM-EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196 (324)
Q Consensus 118 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 196 (324)
+.+...++|+++...- |.......+.-.+.....+ ..+...+..+...|+++ +|+.+-..|....+..-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 5788889999887653 3333333332223322233 34556667778888753 5667777777666666666666
Q ss_pred HHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCH
Q 038109 197 KKMEEE----K----------LGADAR--TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYY 259 (324)
Q Consensus 197 ~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 259 (324)
...... + -.|... ++.-+...|-..|++++|++++++.... .|+ +..|..-.+.+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCH
Confidence 655432 1 124443 4455677788999999999999998865 455 66777788889999999
Q ss_pred HHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHHH
Q 038109 260 AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRD 317 (324)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 317 (324)
.+|.+.++..+..... |...-+..+..+.+.|++++|.+++......+..|...+.+
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 9999999999988654 78887888899999999999999999998888766554443
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=3.9e-09 Score=91.00 Aligned_cols=235 Identities=15% Similarity=0.075 Sum_probs=175.5
Q ss_pred hhhHhhhhchhhhhhHHHHHHHHHHHhcC--------CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-C
Q 038109 71 NTFNFITNTENSLSVLSDLCRTLARLDKG--------FPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEG-----GF-G 135 (324)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~ 135 (324)
.+...+...|...|+++.|+.+++...+. .|... ..+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 67777999999999999999999877432 24443 3455788999999999999999998752 21 1
Q ss_pred C-ChhhHHHHHHHHHccCcHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHC---CC
Q 038109 136 L-SAITFHPILSVLTRGKRMEEAWGLMEVMKEI-----RV-SPDL-TAYNYLLTAYCFKGNLTATSGVLKKMEEE---KL 204 (324)
Q Consensus 136 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~ 204 (324)
| -..+++.|-..|.+.|++++|...+++..+. |. .|.+ ..++.+...|+..+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2456777778899999999998888765431 21 2222 34567778889999999999998865432 12
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCC--
Q 038109 205 GAD----ARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQ--SV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGG-- 271 (324)
Q Consensus 205 ~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-- 271 (324)
.++ ..+++.|...|...|++++|.+++++..+. +. .+ ....++.+...|.+.++...|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 468999999999999999999999987643 11 22 245678888999999999989888855432
Q ss_pred --CCC--CcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 272 --RDI--KLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 272 --~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
.|+ +-...+|..|...|.+.|+++.|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 232 2235789999999999999999999988765
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=4.2e-09 Score=90.78 Aligned_cols=235 Identities=17% Similarity=0.099 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CC-CCCc-hhhHhhhhchhhhhhHHHHHHHHHHHhc----C----C
Q 038109 36 AYYDDLVNAAGHERDLETVRYLLNKRARD-----CC-FNTA-NTFNFITNTENSLSVLSDLCRTLARLDK----G----F 100 (324)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----~ 100 (324)
.+...+...|...|+++.|..++++..+. |. .|.. ...+.+...|...+++++|..+|+++.. . .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666888999999999999999988764 21 2333 3344577788999999999999988732 1 1
Q ss_pred CCH-HHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-CCCh-hhHHHHHHHHHccCcHHHHHHHHHHHHhC---CC
Q 038109 101 PRK-SAYDTLIGRLCKLKKIDEALRVVDIMAE-----GGF-GLSA-ITFHPILSVLTRGKRMEEAWGLMEVMKEI---RV 169 (324)
Q Consensus 101 p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~ 169 (324)
|.+ .+++.|..+|.+.|++++|...+++..+ .|. .|.. ..++.+...|...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 332 3788899999999999999998887764 122 2222 34666777888999999999998865432 11
Q ss_pred CC----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 038109 170 SP----DLTAYNYLLTAYCFKGNLTATSGVLKKMEEE----KL--GA-DARTYDALVLGACRAGRVEEAFVLLRRMVD-- 236 (324)
Q Consensus 170 ~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 236 (324)
.+ -..+++.+...|.+.|++++|.++|++.... +- .+ ....++.|...|.+.++.++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 12 2578999999999999999999999977643 11 12 245678889999999999999999986432
Q ss_pred --CCCC-c-CHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q 038109 237 --DGQS-V-LYSTYAHVMGALLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 237 --~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (324)
.|.. | ...+|..|...|.+.|+++.|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2321 2 35778999999999999999999876654
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.28 E-value=3.1e-08 Score=80.49 Aligned_cols=255 Identities=15% Similarity=0.040 Sum_probs=201.3
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHccCCHHHHHH
Q 038109 47 HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALR 124 (324)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~ 124 (324)
-.|+|.+|.+...+-.+++-.|. ..|..-..+-...|+.+.+-.++.++.+. .++...+-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 37999999999998777764442 33555567778889999999999999776 4566678888999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhhHHHHHH
Q 038109 125 VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL-------TAYNYLLTAYCFKGNLTATSGVLK 197 (324)
Q Consensus 125 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~ 197 (324)
-++++.+.+.. ++.+.....++|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999987655 6788899999999999999999999999999875553 467788877777777777667777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcC
Q 038109 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277 (324)
Q Consensus 198 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (324)
..... .+-++..-.+++.-+.+.|+.++|.++.++-.+.+..|+.. ..-.+.+.++...-.+..+.-.+. .+-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 76554 33467788888999999999999999999999887767622 234566777777666666555444 2335
Q ss_pred HhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q 038109 278 TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309 (324)
Q Consensus 278 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 309 (324)
+..+.+|...|.+.+.|.+|.+.|+.-.+.+.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 68888999999999999999999996654443
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.4e-08 Score=85.90 Aligned_cols=275 Identities=12% Similarity=0.008 Sum_probs=208.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHH
Q 038109 31 DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTL 109 (324)
Q Consensus 31 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~l 109 (324)
...+....-.-.+-|...+++.+..++.+...+. .++....+..=|.++...|+..+...+-.++.+..|+ ..+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 3445555666666777889999999999998876 3566666666677888888888888877888888885 4589888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhc
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI--R-VSPDLTAYNYLLTAYCFK 186 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~-~~~~~~~~~~li~~~~~~ 186 (324)
.--|.-.|+.++|.+.|.+...-... =...|-.+..+|+-.|..++|...+...-+. | ..| ..| +.--|.+.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LY--lgmey~~t 393 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLY--LGMEYMRT 393 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHH--HHHHHHHh
Confidence 88888889999999999887653221 2356777888888899999999888765543 2 223 222 44567788
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCcCHHHHHHHHHHHHhcCCHH
Q 038109 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD----G--QSVLYSTYAHVMGALLRLGYYA 260 (324)
Q Consensus 187 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--~~p~~~~~~~li~~~~~~g~~~ 260 (324)
++++.|.+.|.......+. |+...+-+-...-..+.+.+|..+|+..+.. + ...-..+++.|-.+|.+.+.++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 9999999999887765433 6777888877777888999999999877621 1 1123456788888999999999
Q ss_pred HHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHH
Q 038109 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKL 315 (324)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 315 (324)
+|+..++....... -+..++.++.-.|...|+++.|.+.|.+-. .+.|++.+
T Consensus 473 eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~ 524 (611)
T KOG1173|consen 473 EAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIF 524 (611)
T ss_pred HHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHH
Confidence 99999998888754 488999999999999999999999998754 67776644
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.24 E-value=2.9e-08 Score=88.29 Aligned_cols=271 Identities=13% Similarity=0.084 Sum_probs=206.7
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH------HH
Q 038109 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS------AY 106 (324)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~ 106 (324)
-|...|..+-....+.|++++|.-.|.+.++.. +++-...---...|-+.|+...|...|.++....|... .-
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i 283 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI 283 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH
Confidence 444679999999999999999999999999864 45545555567788999999999999999987776222 23
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCC-----------------
Q 038109 107 DTLIGRLCKLKKIDEALRVVDIMAEGG-FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR----------------- 168 (324)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------------- 168 (324)
-.+++.+...++.+.|.+.++.....+ -..+...+++++..+.+...++.|......+....
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 345777888888899999998887632 33466778899999999999999999888877621
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 169 ----------VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK--LGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 169 ----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
+.++..++ -++-++......+....+...+.... +.-+...|.-+..+|...|++.+|+.+|..+..
T Consensus 364 ~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred ccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 12222231 12233444555555555666666665 333567888999999999999999999999987
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 237 DGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 237 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
....-+...|-.+..+|...|..++|...+.......+ -+...--+|...+.+.|+.++|.+.+..|..
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 65445577888899999999999999999999887642 2455555788889999999999999999753
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.24 E-value=5.3e-09 Score=93.56 Aligned_cols=273 Identities=11% Similarity=0.023 Sum_probs=208.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CCCCCc------hhhHhhhhchhhhhhHHHHHHHHHHHhcCCC
Q 038109 31 DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD---CCFNTA------NTFNFITNTENSLSVLSDLCRTLARLDKGFP 101 (324)
Q Consensus 31 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 101 (324)
..+.+...|.+.......|++..|...|...+.. ...++. .+-..+..++-..++.+.|.+.+..+.+..|
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 3366677999999999999999999999988765 122333 1233456667778899999999999988888
Q ss_pred CHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC-CCCCCHHHHHHH
Q 038109 102 RKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI-RVSPDLTAYNYL 179 (324)
Q Consensus 102 ~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l 179 (324)
+-. .|-.+.-.....+...+|...+....+..- .++..++.+...+.+...+..|.+-|....+. ...+|..+.-+|
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 643 566666455556788999999988887532 35666777777888888888888877765443 233566666566
Q ss_pred HHHHHh------------cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 038109 180 LTAYCF------------KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247 (324)
Q Consensus 180 i~~~~~------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 247 (324)
...|.. .+..++|+++|.+..+..+. |...-|-+..+++..|++++|..+|.+.++... -...+|.
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~l 684 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWL 684 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceee
Confidence 665543 23567899999998888766 888889999999999999999999999988754 3345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhCC-CCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 248 HVMGALLRLGYYAQAVKFVMVCGG-RDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.+..+|...|++..|.++|+...+ ....-+..+...|.+++.+.|.+.+|.+.+.....
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 899999999999999999966544 44456788889999999999999999988876553
No 59
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.21 E-value=7.5e-08 Score=83.07 Aligned_cols=264 Identities=12% Similarity=0.055 Sum_probs=141.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLK 117 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~ 117 (324)
|-...+.....|++..|+.++....+.. +.+...|-..+........+++|..+|.+.....|+..+|.--+..---.+
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh
Confidence 4444444455555555555555554432 233445555555555555555555555555554455555544444444445
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 038109 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197 (324)
Q Consensus 118 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 197 (324)
..++|++++++..+. ++--...|-.+.+.+-+.++.+.|...|..-.+. ++-..-.|-.+...=-+.|.+..|..+++
T Consensus 666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 555555555555443 2212333444444455555555555555443322 12223345555555555666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-------------------------CCcCHHHHHH
Q 038109 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD----G-------------------------QSVLYSTYAH 248 (324)
Q Consensus 198 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-------------------------~~p~~~~~~~ 248 (324)
+..-+++. +...|-..|..=.+.|+.+.|..+..+..+. | ..-|......
T Consensus 744 rarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVlla 822 (913)
T KOG0495|consen 744 RARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLA 822 (913)
T ss_pred HHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHH
Confidence 66666555 6666666666666777766666665554432 1 1123344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
+...+-....++.|.++|....+.+.. .-.+|..+...+.+.|.-++-.+++.....
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 555555666677777777766665422 345566666666677766666666665543
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=1.3e-07 Score=77.92 Aligned_cols=126 Identities=13% Similarity=-0.073 Sum_probs=63.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
.|..+...|...|+.++|...|++..+... .+...|+.+...+...|++++|...|+...+... -+..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 455555555566666666666655555422 2345555555566666666666666665555321 13444555555555
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 234 (324)
..|++++|.+.|+...+..+. +. ........+...++.++|.+.|.+.
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 566666666666655554322 11 1111111223345556666666443
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=3.1e-08 Score=74.75 Aligned_cols=194 Identities=15% Similarity=-0.025 Sum_probs=112.7
Q ss_pred hhhhchhhhhhHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCc
Q 038109 75 FITNTENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153 (324)
Q Consensus 75 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 153 (324)
.|.-.|...|+...|..-+++..+..|+. .+|..+...|.+.|+.+.|.+-|++....... +..+.|..-..+|..|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 34445566666666666666666555543 36666666666666666666666666654222 44555555556666666
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 154 MEEAWGLMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232 (324)
Q Consensus 154 ~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 232 (324)
+++|...|++....- ..-...+|..+.-+..+.|+++.|...|++-.+.... ...+.-.+.....+.|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 666666666655432 1122445666666666666666666666666655433 34455555666666666666666666
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 233 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
.....+. ++..+....|+.-...|+.+.+.++=..+..
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6655443 6666666666666666666666555444433
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=4.3e-08 Score=80.69 Aligned_cols=228 Identities=16% Similarity=0.059 Sum_probs=160.0
Q ss_pred cCCCHHHHHHHHHHHHhcC-CCCC--chhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHH
Q 038109 47 HERDLETVRYLLNKRARDC-CFNT--ANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEA 122 (324)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a 122 (324)
..+..+.+..-+.+++... ..|+ ...|..+...+...|+.++|...|++..+..|+ ...|+.+...+...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456677888888887542 2222 345777888899999999999999999888874 66999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 123 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
...|++..+.... +..+|..+...+...|++++|.+.++...+.. |+..........+...+++++|...|++....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999875332 46778888888899999999999999988764 43322222233345677899999999765543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc
Q 038109 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD---GQ--SV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276 (324)
Q Consensus 203 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (324)
. .|+...+ . ......|+.+++ +.+..+.+. .. .| ....|..+...+.+.|++++|...|+.....++ |
T Consensus 195 ~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~ 268 (296)
T PRK11189 195 L-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-Y 268 (296)
T ss_pred C-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-c
Confidence 2 2232222 2 223345555544 345555432 11 11 235788888899999999999999999887653 3
Q ss_pred CHhHHHH
Q 038109 277 DTELFGS 283 (324)
Q Consensus 277 ~~~~~~~ 283 (324)
|..-+..
T Consensus 269 ~~~e~~~ 275 (296)
T PRK11189 269 NFVEHRY 275 (296)
T ss_pred hHHHHHH
Confidence 5444443
No 63
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.17 E-value=1.9e-07 Score=80.69 Aligned_cols=254 Identities=15% Similarity=0.071 Sum_probs=197.3
Q ss_pred ccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHH
Q 038109 11 FLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90 (324)
Q Consensus 11 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 90 (324)
|..+.|..++...-.... .+...|-.-++.-..+..+++|..+|.+... ..|+...|.--++...-.++.++|.
T Consensus 598 gdv~~ar~il~~af~~~p----nseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANP----NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred CCcHHHHHHHHHHHHhCC----CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHH
Confidence 556666666555444442 3566788899999999999999999988776 5788999988888888899999999
Q ss_pred HHHHHHhcCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCC
Q 038109 91 RTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169 (324)
Q Consensus 91 ~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 169 (324)
+++++..+.+|+-+ .|-.+.+.+-+.++.+.|.+.|..=.+. ++-.+..|-.+...=-+.|++-.|..++++..-.+.
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 99999999999876 7888889999999999999888655443 333455666666666778899999999998877654
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC-----------------------------CCCHHHHHHHHHHHHh
Q 038109 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL-----------------------------GADARTYDALVLGACR 220 (324)
Q Consensus 170 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------------------------~~~~~~~~~li~~~~~ 220 (324)
-+...|-..|++=.+.|+.+.|..+..+..+.-+ .-|.+..-++...+-.
T Consensus 751 -k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 751 -KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred -CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence 3788899999999999999998887765554311 2244555555666667
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC
Q 038109 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 221 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (324)
..++++|.+.|.+.++.+. -+..+|.-+..-+.+.|.-++-.+++.......
T Consensus 830 e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 7789999999999886542 335677778888999999888889998887764
No 64
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=4.1e-09 Score=85.65 Aligned_cols=250 Identities=14% Similarity=0.079 Sum_probs=142.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHccCCHHH
Q 038109 43 NAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK-GFPRKSAYDTLIGRLCKLKKIDE 121 (324)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~ 121 (324)
+-..-.|++..++.-.+ .....-..+......+.+++...|+.+.+. .++.+ ..|.......+...+...++-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCCChhHHHHHHHHHHHhCccchHH
Confidence 33455677777765444 222111112233445567777777766443 33322 23555555555444444345555
Q ss_pred HHHHHHHHHhCCCCCChhhH-HHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038109 122 ALRVVDIMAEGGFGLSAITF-HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200 (324)
Q Consensus 122 a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 200 (324)
++.-+++....+..++..++ ......+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555444433333222222 22234455678888887777542 355666677788888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc
Q 038109 201 EEKLGADARTYDALVLGAC----RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276 (324)
Q Consensus 201 ~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (324)
+. ..| .+...+..++. ..+.+.+|..+|+++.+ ...+++.+.+.+.-++...|++++|..++.+....+..
T Consensus 159 ~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 159 QI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp CC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred hc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 65 223 33333444433 23467888888888754 35567777788888888888888888888887776543
Q ss_pred CHhHHHHHHHHHhCcCCH-HHHHHHHHHHHhC
Q 038109 277 DTELFGSLGSKLIGLERF-NEANFILKEMNKR 307 (324)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 307 (324)
++.+...++-+....|+. +.+.+++.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 566666677766666666 6677777777643
No 65
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=3.2e-08 Score=81.82 Aligned_cols=258 Identities=9% Similarity=-0.008 Sum_probs=176.8
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhh--hhchhhhhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCHH
Q 038109 44 AAGHERDLETVRYLLNKRARDCCFNTANTFNFI--TNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKID 120 (324)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~ 120 (324)
.+.+.|+++.|.++++-+.+..-..-...-+.| +..+....++..|.+.-+...... -+......-.......|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 356788889998888877654322222222222 222222345566666655543221 12222222223334568999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038109 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200 (324)
Q Consensus 121 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 200 (324)
+|.+.|++.....-.-....|++ --.+-..|++++|++.|-.+... +..+..+...+...|....+..+|.+++-...
T Consensus 508 ka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999987643323333333 33466789999999999877653 23467777788899999999999999987665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhH
Q 038109 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL 280 (324)
Q Consensus 201 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (324)
.. ++-|....+.|...|-+.|+-..|++.+-+--+ =++-+..|..-|...|....-++++..+|+...- +.|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 54 334788899999999999999999887654322 2334567777777778888888999999988755 5799999
Q ss_pred HHHHHHHH-hCcCCHHHHHHHHHHHHhC
Q 038109 281 FGSLGSKL-IGLERFNEANFILKEMNKR 307 (324)
Q Consensus 281 ~~~l~~~~-~~~g~~~~a~~~~~~m~~~ 307 (324)
|..++..| .+.|++++|.++++.+..+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99988655 5789999999999988643
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=5.7e-07 Score=76.47 Aligned_cols=263 Identities=18% Similarity=0.060 Sum_probs=166.0
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCCchhhHh---hhhchhhhhhHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHccCCH
Q 038109 44 AAGHERDLETVRYLLNKRARDCCFNTANTFNF---ITNTENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKKI 119 (324)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~ 119 (324)
.+...|++++|.+++++..+. .+.+...+.. ........+..+.+.+.++......|+. .....+...+...|++
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD-YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 456789999999999998875 2334444431 2222223455555666655533344543 3556677888999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCChhhHHHHH
Q 038109 120 DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV-SPDL--TAYNYLLTAYCFKGNLTATSGVL 196 (324)
Q Consensus 120 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~ 196 (324)
++|.+.+++..+... .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..++
T Consensus 131 ~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 131 DRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998643 3567788888899999999999999998877532 2332 34557888899999999999999
Q ss_pred HHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038109 197 KKMEEEKL-GADARTY-D--ALVLGACRAGRVEEAFVL--LRRMVDDGQ--SVLYSTYAHVMGALLRLGYYAQAVKFVMV 268 (324)
Q Consensus 197 ~~m~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (324)
++...... .+..... + .++.-+...|..+.+.++ +........ ............++...|+.+.|..++..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99864432 1222211 1 233334444543333332 211111111 11112223566778899999999999987
Q ss_pred hCCCCCC------c--CHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 269 CGGRDIK------L--DTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 269 ~~~~~~~------~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
+....-. . .....-...-.+...|+.++|.+.+.+.....
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7553211 0 12222222334558899999999999876543
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.4e-07 Score=79.98 Aligned_cols=269 Identities=13% Similarity=-0.028 Sum_probs=203.4
Q ss_pred ccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHH
Q 038109 11 FLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90 (324)
Q Consensus 11 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 90 (324)
+++.+-+.+.+.+-... ++.++ .+..-|..+...|+..+-..+=.++.+. .|..+.+|-++.--|.-.|+.++|.
T Consensus 258 c~f~~c~kit~~lle~d--pfh~~--~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKD--PFHLP--CLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred ChHHHHHHHhHHHHhhC--CCCcc--hHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHH
Confidence 34444445444444333 34444 4666777888888888877777777775 5677789999999999999999999
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCC
Q 038109 91 RTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169 (324)
Q Consensus 91 ~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 169 (324)
+.|.+.....|. ...|-.....|.-.|..|.|+..+...-+- ++-..-.+--+.--|.+.++.+.|.+.|.+.....
T Consensus 333 ry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~- 410 (611)
T KOG1173|consen 333 RYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA- 410 (611)
T ss_pred HHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-
Confidence 999998776664 448999999999999999999999887662 11111112223445788999999999999887753
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 038109 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE----KL-G-ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243 (324)
Q Consensus 170 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 243 (324)
+.|+...+-+.-.....+.+.+|..+|+..... +. . .-..+++.|..+|.+.+.+++|+..+++..... +-+.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~ 489 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDA 489 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCch
Confidence 447778888887788889999999999876621 11 1 134568889999999999999999999987653 3577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHh
Q 038109 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289 (324)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 289 (324)
.++.++.-.|...|+++.|...|.+... +.|+-.+-..++..+.
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 8888888899999999999999998876 4677766666666443
No 68
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=1.2e-06 Score=73.18 Aligned_cols=281 Identities=10% Similarity=0.023 Sum_probs=150.4
Q ss_pred ccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHH
Q 038109 11 FLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC 90 (324)
Q Consensus 11 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 90 (324)
|++..|.++++.+-. ..|+...|.+.|+.=.+-+.++.|..+++...- +.|+..+|--..+.-.+.|.+..+.
T Consensus 155 gNi~gaRqiferW~~-----w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 155 GNIAGARQIFERWME-----WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred cccHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 566667777665433 459999999999999999999999999998876 3588888877777777788888777
Q ss_pred HHHHHHhcCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhC----------------------------------
Q 038109 91 RTLARLDKGFPRKS----AYDTLIGRLCKLKKIDEALRVVDIMAEG---------------------------------- 132 (324)
Q Consensus 91 ~~~~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------------- 132 (324)
++++...+...|.. .+.+...-=.++..++.|.-+|+-..+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 77776544332221 2333332223333344444333332221
Q ss_pred ---------CCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH--HHHH--------HHHHHHHhcCChhhHH
Q 038109 133 ---------GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL--TAYN--------YLLTAYCFKGNLTATS 193 (324)
Q Consensus 133 ---------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~--------~li~~~~~~~~~~~a~ 193 (324)
.-+.|-.+|-..+..-...|+.+...++|++.... ++|-. ..|. ..+-.=....+.+.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 01224445555555555667777777777776654 33321 1111 1111112345666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 194 GVLKKMEEEKLGADARTYDALVLGA----CRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 194 ~~~~~m~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
++|+...+. ++-...||.-+--.| .++.++..|.+++.... |..|-..+|-..|..=.+.++++.+..+++..
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666555542 211233333332222 23444555555544433 44455555555555444555555555555555
Q ss_pred CCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHH
Q 038109 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
.+.++. +..+|......=...|+.+.|..+|+-
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 544322 444444444444444444444444443
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=2.2e-07 Score=70.26 Aligned_cols=197 Identities=13% Similarity=0.004 Sum_probs=165.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
+.--|.-+|...|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+.|+...+... -+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 4666788999999999999999999997543 678899999999999999999999999888653 36778899999999
Q ss_pred hcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGA-DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 263 (324)
..|++++|...|++....-.-| -..+|..+.-+..+.|+.+.|.+.|++-.+... -...+...+.......|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988752111 256788888888999999999999999887532 22355677888999999999999
Q ss_pred HHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 264 KFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
.+++.....+. ++..+....|+.--+.|+.+.+-++=.++.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999988875 788888888898889999998887766654
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=6.3e-08 Score=80.74 Aligned_cols=194 Identities=16% Similarity=0.165 Sum_probs=115.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHcc
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKL 116 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~ 116 (324)
|-.+...|....+.++....|....+-+ +.++.+|..-.....-.+++++|..-|++..+..|+ ...|--+.-+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 4444455666666666666666666543 445566666666666666777777767666666553 33555555556666
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcCCh
Q 038109 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS-------PDLTAYNYLLTAYCFKGNL 189 (324)
Q Consensus 117 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------~~~~~~~~li~~~~~~~~~ 189 (324)
+++++++..|++..++ ++--+.+|+.....+...+++++|.+.|+..+..... +...+--+++-.-- .+++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhH
Confidence 6777777777766654 4445566666666666777777777776665543211 11111112221112 2566
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 190 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
..|..++++..+.+++ ....|-.|...-.+.|+.++|+++|++-.
T Consensus 520 ~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666666665444 45666666666666777777777766543
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=5.2e-08 Score=81.21 Aligned_cols=224 Identities=9% Similarity=-0.040 Sum_probs=174.0
Q ss_pred hhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHH
Q 038109 77 TNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155 (324)
Q Consensus 77 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 155 (324)
...+.-.|+.-.+..-|+...+..|... .|--+...|....+.++..+.|++..+-... ++.+|..-.+...-.++++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 3345556888888888888877766433 3878888999999999999999999886544 6777888788888889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 156 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
+|..=|+..+.... .+...|-.+.-+..+.+++++++..|++..++-+. ....|+.....+...+++++|.+.|+...
T Consensus 412 ~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99999999888643 25666777777778899999999999999887433 68899999999999999999999999877
Q ss_pred HCC-----CCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 236 DDG-----QSVLYST--YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 236 ~~~-----~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
... +..+... .-.++.. -=.+++..|..++....+..++ ....|.+|...-.+.|++++|+++|++-.
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 542 1112222 1112211 1238999999999999887654 45678899999999999999999999753
No 72
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.5e-06 Score=78.47 Aligned_cols=198 Identities=12% Similarity=0.052 Sum_probs=77.8
Q ss_pred CchhhHhhhhchhhhhhHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038109 69 TANTFNFITNTENSLSVLSDLCRTLARLDKGF----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144 (324)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 144 (324)
++...+.|.+.+.-.|++..++.+.+.+.... --...|-.+.++|...|++++|...|.+..+..-.-....+--+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 33444444444444444444444444432211 01123444444555555555555554444332211111222233
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038109 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG----NLTATSGVLKKMEEEKLGADARTYDALVLGACR 220 (324)
Q Consensus 145 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 220 (324)
.+.+.+.|+++.+...|+...+.. +.+..|..++...|...+ ..+.|..++.+..+.-+. |...|-.+...+..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHh
Confidence 444444455555554444444431 122333333333333332 223333333333333222 34444444333333
Q ss_pred cCCHHHHHHHHHHH----HHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 221 AGRVEEAFVLLRRM----VDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 221 ~g~~~~a~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
.+- ..++.+|... ...+..+.....|.+.......|++..|...|...
T Consensus 427 ~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 427 TDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred cCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 222 2223333322 12233344444455555555555555555554443
No 73
>PF12854 PPR_1: PPR repeat
Probab=99.02 E-value=5e-10 Score=58.92 Aligned_cols=32 Identities=47% Similarity=0.789 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038109 203 KLGADARTYDALVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 203 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 234 (324)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 74
>PF12854 PPR_1: PPR repeat
Probab=99.00 E-value=5.7e-10 Score=58.72 Aligned_cols=33 Identities=27% Similarity=0.639 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038109 168 RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200 (324)
Q Consensus 168 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 200 (324)
|+.||..|||++|.+|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777777777777777777777777777763
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=1.8e-06 Score=73.39 Aligned_cols=266 Identities=11% Similarity=-0.053 Sum_probs=165.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCch---hhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHH---H
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN---TFNFITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDT---L 109 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~---l 109 (324)
.|..+...+...++.+.+.+.+....+.. +++.. ........+...|++++|.+.+++..+..|+.. .+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHH
Confidence 34555555666677777766666654431 22222 122234456778999999999999877777543 4442 2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEGGFGLS-AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 188 (324)
.......+..+.+.+.+.. ..+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 2222234555666665554 1122233 3344455667889999999999999998875 3356778888999999999
Q ss_pred hhhHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHH-H--HHHHHHHhcCCHHH
Q 038109 189 LTATSGVLKKMEEEKLG-ADA--RTYDALVLGACRAGRVEEAFVLLRRMVDDGQ-SVLYSTY-A--HVMGALLRLGYYAQ 261 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~~-~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~ 261 (324)
+++|...+++....... |+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 99999999988775332 232 3466788899999999999999999864322 1222111 1 23333444454433
Q ss_pred HHHH--H-HHhCCCCC-CcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 262 AVKF--V-MVCGGRDI-KLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 262 a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
+.++ + ........ ............++...|+.++|..+++.+..
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3333 2 11111100 11112223567788899999999999999865
No 76
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.98 E-value=4.7e-08 Score=86.90 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 038109 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250 (324)
Q Consensus 171 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 250 (324)
|+..+|.+.+.+-..+|+.+.|..++.+|.+.|...+.+-|-.|+.+ .++...++.+++-|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 55555555555555555555555555555555555554444444433 455555555555555555555555555444
Q ss_pred HHHHh
Q 038109 251 GALLR 255 (324)
Q Consensus 251 ~~~~~ 255 (324)
-.+..
T Consensus 279 ip~l~ 283 (1088)
T KOG4318|consen 279 IPQLS 283 (1088)
T ss_pred Hhhhc
Confidence 44444
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.1e-06 Score=67.49 Aligned_cols=256 Identities=11% Similarity=-0.038 Sum_probs=153.7
Q ss_pred CCCHHHHHHHHHHHHh-cCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCHHHHHHH
Q 038109 48 ERDLETVRYLLNKRAR-DCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRV 125 (324)
Q Consensus 48 ~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~ 125 (324)
.++...+.+.+-.+.. .-++.+......+..++...|+.++++..|++.....|+.. ......-.+.+.|++++...+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 3444444444433332 23566677888889999999999999999998877776433 333334445566777777666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 038109 126 VDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205 (324)
Q Consensus 126 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 205 (324)
...+.... .-+...|-.-.......++++.|+.+-+..++... .+...|-.-...+...++.++|.-.|+.....-+.
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 66655421 01222233333333444555555555555544321 12233333334444555555555555555443222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHH------------------------------------HHHHHHCCCCcC-HHHHHH
Q 038109 206 ADARTYDALVLGACRAGRVEEAFVL------------------------------------LRRMVDDGQSVL-YSTYAH 248 (324)
Q Consensus 206 ~~~~~~~~li~~~~~~g~~~~a~~~------------------------------------~~~m~~~~~~p~-~~~~~~ 248 (324)
+...|.-|+.+|...|++.+|..+ ++.-. .+.|+ ....+.
T Consensus 367 -rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L--~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 367 -RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL--KINPIYTPAVNL 443 (564)
T ss_pred -hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh--ccCCccHHHHHH
Confidence 455555566655555555554443 33322 12344 233455
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCc
Q 038109 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310 (324)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 310 (324)
+...|...|..+.+..+++..... .||....+.|.+.+...+.+++|++.|......+.+
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 667788899999999999888764 679999999999999999999999999877654433
No 78
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=6.4e-07 Score=83.52 Aligned_cols=214 Identities=13% Similarity=0.047 Sum_probs=173.0
Q ss_pred HHHHHhcCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 038109 92 TLARLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL-----SAITFHPILSVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 92 ~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 165 (324)
-|+++....|+. ..|-..|.-....++.++|.++.++.... +.+ -...|.++++.-...|.-+...++|++..
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 345555556754 48999999999999999999999998864 222 23567778877777788899999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---
Q 038109 166 EIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL--- 242 (324)
Q Consensus 166 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--- 242 (324)
+.. .....|..|...|.+.+.+++|.++++.|.++-- -....|...+..+.+.++.+.|..++.+..+. -|.
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eH 1599 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEH 1599 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhh
Confidence 853 2456788999999999999999999999987622 37789999999999999999999999988764 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchh
Q 038109 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312 (324)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 312 (324)
.....-.++.-.+.|+.+.+..+|+.....-++ ....|+..|+.-.+.|+.+.+..+|++....++.|-
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 333344455566889999999999998887443 778999999999999999999999999999998873
No 79
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=1e-06 Score=82.29 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC-----chhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 038109 36 AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNT-----ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLI 110 (324)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li 110 (324)
..|-..|....+.++.+.|+++.++.+.. +.+. ...|.++++.-...|.-+...++|+++.+....-.+|..|.
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 44777777777777777777777777654 2111 24566777766666777777777777765433344677777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCh
Q 038109 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS-PDLTAYNYLLTAYCFKGNL 189 (324)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~ 189 (324)
..|.+.+..++|-++++.|.+. +.-...+|...+..+.+.++-+.|..++.+..+.=.+ -......-.+..=.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7777777777777777777764 3345667777777777777777777777776654211 1233444445555677777
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCHH
Q 038109 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY--STYAHVMGALLRLGYYA 260 (324)
Q Consensus 190 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 260 (324)
+.+..+|+.....-++ -...|+..|+.=.++|+.+.+..+|++....++.|-. ..|.-.+..=-+.|+-.
T Consensus 1617 eRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 7777777777766444 5667777777777777777777777777777665542 33444444444444433
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=1.4e-06 Score=68.53 Aligned_cols=263 Identities=15% Similarity=0.060 Sum_probs=169.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHc
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDT-LIGRLCK 115 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-li~~~~~ 115 (324)
.+++.+..+.+..++..|.+++....++. +.+....+.|..+|-...++..|-..++++....|...-|.. -...+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 36677777778888888888887776652 336677778888888888899998888888887787665543 2455666
Q ss_pred cCCHHHHHHHHHHHHhC------------------CC----------CC---ChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 038109 116 LKKIDEALRVVDIMAEG------------------GF----------GL---SAITFHPILSVLTRGKRMEEAWGLMEVM 164 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~------------------g~----------~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m 164 (324)
.+.+.+|+++...|.+. +- .| +..+.+...-...+.|+++.|.+-|+..
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 77777777777665431 00 11 1122222222234778899999999887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-------------CCH---------------HHHHHHHH
Q 038109 165 KEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG-------------ADA---------------RTYDALVL 216 (324)
Q Consensus 165 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------~~~---------------~~~~~li~ 216 (324)
.+-|.-.....||..+ ++.+.+++..|++...++.++|++ ||+ ..+|.-..
T Consensus 171 lqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred HhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 7655434566777666 455678999999999988887753 222 12333334
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHH
Q 038109 217 GACRAGRVEEAFVLLRRMVDD-GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295 (324)
Q Consensus 217 ~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 295 (324)
.+.+.|+++.|.+-+..|.-. .-..|+.|...+.-. --.+++....+-++-+.+..+ ....||..++-.||+..-++
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHh
Confidence 455778888888888777532 233455665443322 123445555555555555544 35667777888888888787
Q ss_pred HHHHHHHH
Q 038109 296 EANFILKE 303 (324)
Q Consensus 296 ~a~~~~~~ 303 (324)
-|-+++-+
T Consensus 328 lAADvLAE 335 (459)
T KOG4340|consen 328 LAADVLAE 335 (459)
T ss_pred HHHHHHhh
Confidence 77777654
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=1.8e-07 Score=76.19 Aligned_cols=224 Identities=14% Similarity=0.078 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHh-cCCC-CHHHHH-HHH
Q 038109 34 TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD-KGFP-RKSAYD-TLI 110 (324)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p-~~~~~~-~li 110 (324)
......-+.+++...|+++.++ .+..... .|.......+...+....+-+.+..-++... +..+ +..++. ...
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 3444566677788888876543 4444433 6666666666555554445555555554432 2222 233333 334
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc
Q 038109 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY----CFK 186 (324)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~ 186 (324)
..+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+.+ .|. +...+..++ ...
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCc
Confidence 6677889999999988542 366777888999999999999999999999864 343 333344433 334
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH-HHHHHH
Q 038109 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY-AQAVKF 265 (324)
Q Consensus 187 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~ 265 (324)
+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..... +-+..+...++-.....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 5799999999998765 55688999999999999999999999999977543 23466777788877888877 677888
Q ss_pred HHHhCCC
Q 038109 266 VMVCGGR 272 (324)
Q Consensus 266 ~~~~~~~ 272 (324)
+..+...
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 8887764
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=4.2e-06 Score=71.53 Aligned_cols=249 Identities=14% Similarity=0.080 Sum_probs=185.3
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHH
Q 038109 45 AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEAL 123 (324)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~ 123 (324)
+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+.+..+..| +..+.-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467889999999999888763 56678999999999999999999999999988888 4568888999999999999999
Q ss_pred HHHHHHHhCCCCC--------ChhhHHHHHHHHHccCcHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 038109 124 RVVDIMAEGGFGL--------SAITFHPILSVLTRGKRMEEAWGLMEVMKE-IRVSPDLTAYNYLLTAYCFKGNLTATSG 194 (324)
Q Consensus 124 ~~~~~m~~~g~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~ 194 (324)
+.++.-.....+- +...-.. ..+.....+....++|-++.. .+..+|..++..|.-.|.-.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9998876533110 0000000 122333345556666666544 4445778888888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhC--
Q 038109 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL--YSTYAHVMGALLRLGYYAQAVKFVMVCG-- 270 (324)
Q Consensus 195 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~-- 270 (324)
.|+......+. |..+||-|-.+++...+.++|+..|++.++. +|+ ..-|| |.-+|...|.+++|.+.|-..+
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999987666 8899999999999999999999999999864 555 33455 5557899999999988774432
Q ss_pred -CC------CCCcCHhHHHHHHHHHhCcCCHHHHHHH
Q 038109 271 -GR------DIKLDTELFGSLGSKLIGLERFNEANFI 300 (324)
Q Consensus 271 -~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (324)
+. +..++...|..|=.++.-.++.|.+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 21 1222345777776677777777655544
No 83
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=1.5e-05 Score=65.86 Aligned_cols=210 Identities=10% Similarity=-0.036 Sum_probs=102.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhh-hHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccC
Q 038109 40 DLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS-VLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLK 117 (324)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~ 117 (324)
.+-..+...+..++|+.+..++++.. +-+..+|+....++...| .++++...++++.+..|+ ..+|+.-.-.+.+.|
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 33344445566666776666666532 222234444444444445 456666666666555543 335554333333334
Q ss_pred C--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCh---
Q 038109 118 K--IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK---GNL--- 189 (324)
Q Consensus 118 ~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~--- 189 (324)
+ .++++.+++++.+.... +..+|+.....+.+.|+++++++.++++.+.+.. |...|+.....+.+. |..
T Consensus 121 ~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 3 24556666666554333 4555555555555666666666666666665433 444444444333332 112
Q ss_pred -hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 038109 190 -TATSGVLKKMEEEKLGADARTYDALVLGACRA----GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254 (324)
Q Consensus 190 -~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 254 (324)
++......+.....+. |...|+-+...+... ++..+|.+.+.+....+ ..+......|+..|+
T Consensus 199 ~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 199 RDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 2344444444444333 555555555555442 22344555555444322 123334444444444
No 84
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=4.2e-05 Score=64.24 Aligned_cols=126 Identities=10% Similarity=0.065 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCc-hhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038109 34 TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGR 112 (324)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~ 112 (324)
+...|-..+..=.+...+..|..+++..... -|-+ ..|.-.+..--..|++..|.++|+.-.+-.|+..+|++.|+.
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKF 183 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 3344656666666666666666666665542 2222 334444444445566666666666655555666666666666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 038109 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 163 (324)
=.+-+.++.|..++++.+-. .|+..+|--....=-+.|....+..+|+.
T Consensus 184 ElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 66666666666666655542 24555554444444444544444444443
No 85
>PLN02789 farnesyltranstransferase
Probab=98.78 E-value=2.5e-05 Score=64.64 Aligned_cols=235 Identities=9% Similarity=-0.001 Sum_probs=166.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHccC-CHHHHHHH
Q 038109 48 ERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLK-KIDEALRV 125 (324)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~li~~~~~~~-~~~~a~~~ 125 (324)
.+++.+|...|+..... .+..++|..+.+++....|+. .+|+.--..+...| ++++++..
T Consensus 33 ~~~~~~a~~~~ra~l~~------------------~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 33 TPEFREAMDYFRAVYAS------------------DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred CHHHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHH
Confidence 34566666666655443 345668888888887777754 47776666666667 68999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCcH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 038109 126 VDIMAEGGFGLSAITFHPILSVLTRGKRM--EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 126 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 203 (324)
++++.+.... +..+|+.--..+.+.|+. +++..+++.+.+... -|..+|+....++...|+++++++.++++.+.+
T Consensus 95 ~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 95 AEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 9999986544 555666555555556653 677888888887764 378899999999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHhCCC
Q 038109 204 LGADARTYDALVLGACRA---GRV----EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL----GYYAQAVKFVMVCGGR 272 (324)
Q Consensus 204 ~~~~~~~~~~li~~~~~~---g~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~ 272 (324)
+. |...|+.....+.+. |.. ++..+...+..... +-|...|+-+-..+... ++..+|...+.+....
T Consensus 173 ~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 173 VR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred CC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 77 888888877766654 222 45666665665432 23456666666666662 3446688888777665
Q ss_pred CCCcCHhHHHHHHHHHhCcC------------------CHHHHHHHHHHHH
Q 038109 273 DIKLDTELFGSLGSKLIGLE------------------RFNEANFILKEMN 305 (324)
Q Consensus 273 ~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 305 (324)
++ .+......|++.|+... ..++|.++++.+.
T Consensus 251 ~~-~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 251 DS-NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cC-CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 53 36777888899888632 3467888888883
No 86
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=1e-06 Score=77.15 Aligned_cols=215 Identities=14% Similarity=0.083 Sum_probs=170.2
Q ss_pred hhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 038109 72 TFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151 (324)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 151 (324)
.-..+...+.+.|-...|..+++++. .|.-.|.+|...|+..+|..+..+-.+ -+||...|..+.+.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 33455667788888889998888764 588889999999999999999888877 457888899988888777
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 231 (324)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+.- -..+|-..-.+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 7788998888865432 1111112223478999999999877665443 6778888888888999999999999
Q ss_pred HHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 232 RRMVDDGQSV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 232 ~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
...... .| +...|+.+-.+|.+.++-.+|...+.+..+.+. -+...|...+-...+.|.+++|++.+.++.+
T Consensus 543 ~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 988753 34 467899999999999999999999999998874 4677888888888999999999999998754
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=6.8e-06 Score=65.50 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=34.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCCCC--CcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 249 VMGALLRLGYYAQAVKFVMVCGGRDI--KLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
+...+.+.|++.+|...+....+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34456666777777766666655421 11245566666677777777777776666543
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=2.9e-06 Score=67.58 Aligned_cols=182 Identities=14% Similarity=0.042 Sum_probs=93.6
Q ss_pred hhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC-hhhHHHH
Q 038109 71 NTFNFITNTENSLSVLSDLCRTLARLDKGFPRK----SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG-LS-AITFHPI 144 (324)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~-~~~~~~l 144 (324)
..+..+...+...|+++.|...++++....|+. .++..+...+...|++++|...++++.+.... |. ..++..+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 344455555666666666666666665555432 24555666666677777777777766653221 11 0123333
Q ss_pred HHHHHcc--------CcHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 038109 145 LSVLTRG--------KRMEEAWGLMEVMKEIRVSPDL-TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215 (324)
Q Consensus 145 i~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 215 (324)
..++... |+.++|.+.++.+.+.. |+. ..+..+..... ... .. ......+.
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~~a 173 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKELYVA 173 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHHHHH
Confidence 3333332 55666777777666542 221 12211111100 000 00 00011344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 216 LGACRAGRVEEAFVLLRRMVDDG--QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
..+.+.|++++|...++...+.. .+.....+..+..++...|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667777777777777766541 1122455666667777777777777766666543
No 89
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=3.2e-05 Score=71.50 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCc-hhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038109 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIG 111 (324)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~ 111 (324)
.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+.+..+ .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv---------------~~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL---------------NLID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh---------------hhhh
Confidence 44567899999999999999999999977664 3444 4444444466666665555443 2333
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh
Q 038109 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191 (324)
Q Consensus 112 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 191 (324)
......++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+|+++.+.. +-|..+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 3333334433333344444422 133355566666666666666666666666655 33566666666666666 6666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH---HH--hcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038109 192 TSGVLKKMEEEKLGADARTYDALVLG---AC--RAGRVEEAFVLLRRMVDD-GQSVLYSTYAHVMGALLRLGYYAQAVKF 265 (324)
Q Consensus 192 a~~~~~~m~~~~~~~~~~~~~~li~~---~~--~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~ 265 (324)
|.+++.+....-+ +..-|+.+... ++ ...+.+.-.++.+.+... |..--..++-.+-..|-..++++++..+
T Consensus 168 A~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 168 AITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 6666655544311 11111111111 11 112233333344444333 3223345555666778888889999999
Q ss_pred HHHhCCCCCCcCHhHHHHHHHHHh
Q 038109 266 VMVCGGRDIKLDTELFGSLGSKLI 289 (324)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~~~~ 289 (324)
++.+.+.... |.....-++.+|.
T Consensus 246 LK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCc-chhhHHHHHHHHH
Confidence 9999887644 6677777888776
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.66 E-value=0.00021 Score=62.34 Aligned_cols=289 Identities=14% Similarity=0.106 Sum_probs=169.4
Q ss_pred ccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHH------HHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhh
Q 038109 11 FLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVN------AAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84 (324)
Q Consensus 11 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 84 (324)
|....|..+++.+..... ..|+...|..... ...+.|.++.|.+.+..-... +......-..-...+.+.+
T Consensus 157 g~y~~A~~il~ef~~t~~--~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQN--TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHh
Confidence 455677888888887775 4466665554443 345678888888877654433 2222223334467788999
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHccCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHH
Q 038109 85 VLSDLCRTLARLDKGFPRKSAYDTL-IGRLCKLKKIDEAL-RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162 (324)
Q Consensus 85 ~~~~a~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 162 (324)
++++|..++..+...+||...|... ..++.+..+--++. .+|....+. .+-....-..=++......-.+....++.
T Consensus 234 ~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHH
Confidence 9999999999999999988866554 45554343333333 666666543 11111111111111112223344556666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH----HHHHHHHCC----------CCCCHHHHH--HHHHHHHhcCCHHH
Q 038109 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG----VLKKMEEEK----------LGADARTYD--ALVLGACRAGRVEE 226 (324)
Q Consensus 163 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~----------~~~~~~~~~--~li~~~~~~g~~~~ 226 (324)
.+.+.|+++ ++..+.+.|-.-...+-..+ +...+...| -.|....|. -++..+-+.|+++.
T Consensus 313 ~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 313 PLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 777777654 33344444333222221111 111111111 134544444 45666778888888
Q ss_pred HHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 227 AFVLLRRMVDDGQSVLY-STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 227 a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
|...++.... ..|+. ..|..=.+.+...|+++.|..++++..+.+ .+|...-..-..-..+++++++|.++.....
T Consensus 390 A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 390 ALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 8888887763 34552 334444467888888888888888887764 3465554455566667888888888888887
Q ss_pred hCCC
Q 038109 306 KRDL 309 (324)
Q Consensus 306 ~~~~ 309 (324)
+.|.
T Consensus 467 r~~~ 470 (700)
T KOG1156|consen 467 REGF 470 (700)
T ss_pred hccc
Confidence 7775
No 91
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.65 E-value=0.0001 Score=64.21 Aligned_cols=202 Identities=11% Similarity=0.046 Sum_probs=96.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCcHHHHHHHHHHHHhCC-----------CCC
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS---AITFHPILSVLTRGKRMEEAWGLMEVMKEIR-----------VSP 171 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------~~~ 171 (324)
|..+.+.|-..|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.|+++.++....- .++
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 44555555566666666666665554332211 2233333333334445555555544432210 000
Q ss_pred ------CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HH
Q 038109 172 ------DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YS 244 (324)
Q Consensus 172 ------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~ 244 (324)
+...|...++.--..|-++....+|+++.+..+. ++...-.....+-.+.-++++.++|++-...=-.|+ ..
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1233444455555556666666666666665443 222222222233344556666666654332211132 22
Q ss_pred HHHHHHHHHH-h--cCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHh----CcCCHHHHHHHHHHHHhCCCchh
Q 038109 245 TYAHVMGALL-R--LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI----GLERFNEANFILKEMNKRDLKMG 312 (324)
Q Consensus 245 ~~~~li~~~~-~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~m~~~~~~~~ 312 (324)
.|+..+.-+. + .-.++.|..+|++..+ |.+|...- ++.-.|+ +.|-...|+.++++. ..++.+.
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aK--tiyLlYA~lEEe~GLar~amsiyera-t~~v~~a 619 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAK--TIYLLYAKLEEEHGLARHAMSIYERA-TSAVKEA 619 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHH-HhcCCHH
Confidence 3333333222 2 2357788888888877 45443322 2222232 447777788888874 3455543
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=5.2e-05 Score=69.15 Aligned_cols=191 Identities=14% Similarity=0.092 Sum_probs=134.5
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHH
Q 038109 32 EPTSAYYDDLVNAAGHERDLETV-RYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTL 109 (324)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~l 109 (324)
..++...+.+=.+.+..|.-++| .+++.+..+ ++....+.....++..-+..+.+.+| +...+-.|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 25 ASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred CCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 33444455555566677766655 444444432 12222222223333322233334445 47788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 189 (324)
.....+.|.+++|..+++...+.... +......+...+.+.+++++|....++...... -+......+..++.+.|++
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcch
Confidence 99999999999999999998885322 456677788888899999999999999888753 2566777788888899999
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038109 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 190 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 237 (324)
++|..+|++....+.. +..++..+...+-..|+.++|...|+...+.
T Consensus 171 ~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 171 EQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999885443 5888888899999999999999999988754
No 93
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=4.4e-05 Score=59.36 Aligned_cols=247 Identities=14% Similarity=0.100 Sum_probs=133.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCHHH
Q 038109 43 NAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDE 121 (324)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~ 121 (324)
+-+.-.|++..+...-....... .+...-..+.++|...|...... ..++.+. |.......+......-++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---cccccccCChHHHHHHHHHHhhCcchhHH
Confidence 44555677766665554433221 22222333444555555433222 1221111 223333333333333444333
Q ss_pred HH-HHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038109 122 AL-RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200 (324)
Q Consensus 122 a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 200 (324)
-+ ++.+.+.......+......-...|++.+++++|++..+... +......=+..+.+..+++.|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333444443333333333344456777778888877776521 22333333445556677777887777777
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc
Q 038109 201 EEKLGADARTYDALVLGACR----AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276 (324)
Q Consensus 201 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (324)
+- -+..|.+.|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+....++...|++++|..+++.......+
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 64 255666666666554 3557778888887764 35677777777777777888888888888777776544
Q ss_pred CHhHHHHHHHHHhCcCCHH-HHHHHHHHHH
Q 038109 277 DTELFGSLGSKLIGLERFN-EANFILKEMN 305 (324)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~~-~a~~~~~~m~ 305 (324)
++.+...++-.-...|... -..+.+.+++
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 5555555555444445443 3445555554
No 94
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.00016 Score=59.86 Aligned_cols=236 Identities=10% Similarity=-0.029 Sum_probs=145.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCch-hhHhhhhchhhhhhHHHHHHHHHHHhcCC-CCHHHHHH
Q 038109 31 DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTAN-TFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDT 108 (324)
Q Consensus 31 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~ 108 (324)
++-|++....+.+.+...|+..+|...|++.... .|+.. ......-.+.+.|+.+....+...+.... .....|-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 6678888999999999999999999999987653 23321 11111222344555555555555443222 22223333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 188 (324)
-.......++++.|+.+-++.++.... +...|-.-...+...+++++|.-.|...+... +-+...|.-++.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 333444455556666555555543221 23333333344455555666655555554432 1245556666666655555
Q ss_pred hhhHH------------------------------------HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 189 LTATS------------------------------------GVLKKMEEEKLGAD-ARTYDALVLGACRAGRVEEAFVLL 231 (324)
Q Consensus 189 ~~~a~------------------------------------~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 231 (324)
+.+|. ++++.-.+. .|+ ....+.+...+...|..+.+..++
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 55544 333333322 333 455677778888999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCC
Q 038109 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274 (324)
Q Consensus 232 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (324)
+.-.. ..||....+.|-+.+...+.+.+|...|......++
T Consensus 462 e~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 462 EKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 98875 469999999999999999999999999988887653
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=1.6e-05 Score=61.61 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=93.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038109 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186 (324)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 186 (324)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555556666666666665554332 12244444556666666667776766666665543 45666666666666677
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFV 266 (324)
Q Consensus 187 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 266 (324)
|++++|..-|.+..+..+. +...+|.+.-.+.-.|+.+.|..++......+.. |...-..+.-.....|+++.|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777776666666655433 4555666666666666667776666666554332 3333444555566666666666655
Q ss_pred HH
Q 038109 267 MV 268 (324)
Q Consensus 267 ~~ 268 (324)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 33
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=5e-06 Score=72.99 Aligned_cols=212 Identities=13% Similarity=0.042 Sum_probs=143.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHH
Q 038109 41 LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKID 120 (324)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 120 (324)
+...+...|-...|..+++.... |..++.+|...|+...|..+..+..+..|+...|..+.+.....--++
T Consensus 404 laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 44455566677777777765533 446677788888888888877777666677778888887777777778
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038109 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200 (324)
Q Consensus 121 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 200 (324)
+|.++.+....+ .-..+-....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.|..-.
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 888777665432 11112222334677888888887655543 2245667777777778888888888887777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 201 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
...+. +...||.+-.+|.+.++-.+|...+++..+.. .-+...|-..+-...+.|.+++|.+.+..+..
T Consensus 547 tL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 65443 56778888888888888888888888877665 33444555556666777888888887766643
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=3.5e-05 Score=59.76 Aligned_cols=152 Identities=15% Similarity=0.071 Sum_probs=68.6
Q ss_pred hchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHH
Q 038109 78 NTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156 (324)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 156 (324)
..+...|+-+....+........| +....+..+....+.|++..|...+++...- -++|..+|+.+--+|.+.|+.+.
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhH
Confidence 333334444444443333322222 2333344445555555555555555554432 23344555555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232 (324)
Q Consensus 157 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 232 (324)
|..-|.+..+.-. -+...+|.+...+.-.|+++.|..++......+.. |...-..+.......|++++|..+..
T Consensus 153 Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 153 ARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555554444321 13334444444444455555555555544444332 44444444444455555555554443
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=3e-05 Score=59.66 Aligned_cols=119 Identities=10% Similarity=0.067 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCc--HHHHH
Q 038109 83 LSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV-LTRGKR--MEEAW 158 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~~~--~~~a~ 158 (324)
.++.+++...++...+..| +...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5555666666666555444 5557777777777777777777777777664322 45555555554 345555 36777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 038109 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 159 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 203 (324)
.++++..+.+.. +..++..+...+.+.|++++|...|+++.+..
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777776665432 55666666666677777777777777766653
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.59 E-value=9.1e-05 Score=71.17 Aligned_cols=298 Identities=12% Similarity=0.011 Sum_probs=185.0
Q ss_pred CccchhHHHHHHHHhhhcCCCC---CCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCc----hhhHhhhhch
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPD---EPTS--AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA----NTFNFITNTE 80 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~---~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~ 80 (324)
.++++++...+........... .+.. .....+-..+...|+++.|...++...+.--..+. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 3556666666665544321111 1111 11222233456789999999999987763111111 2345556667
Q ss_pred hhhhhHHHHHHHHHHHhcCC-----CC--HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCC--C-ChhhHHHHHH
Q 038109 81 NSLSVLSDLCRTLARLDKGF-----PR--KSAYDTLIGRLCKLKKIDEALRVVDIMAE----GGFG--L-SAITFHPILS 146 (324)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~-----p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~--~-~~~~~~~li~ 146 (324)
...|++++|...+++..... +. ..++..+...+...|++++|...+++..+ .|.. + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 78999999999988874321 22 22456677788899999999999887664 2221 1 1233444555
Q ss_pred HHHccCcHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHHH-----HHHHH
Q 038109 147 VLTRGKRMEEAWGLMEVMKEIR--VSP--DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA-DARTY-----DALVL 216 (324)
Q Consensus 147 ~~~~~~~~~~a~~~~~~m~~~~--~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~-----~~li~ 216 (324)
.+...|++++|...+.+..... ..+ ....+..+...+...|++++|...++......... ....+ ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 6677799999999988765431 112 23445556677888999999999988875421110 11111 11224
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHhCCC----CCCc-CHhHHHHHHHHH
Q 038109 217 GACRAGRVEEAFVLLRRMVDDGQSVL---YSTYAHVMGALLRLGYYAQAVKFVMVCGGR----DIKL-DTELFGSLGSKL 288 (324)
Q Consensus 217 ~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 288 (324)
.+...|+.+.|.+++........... ...+..+..++...|+.++|...++..... |..+ ...+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 45568999999999877553221111 111345667788999999999988776542 3222 234566677888
Q ss_pred hCcCCHHHHHHHHHHHHhC
Q 038109 289 IGLERFNEANFILKEMNKR 307 (324)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (324)
.+.|+.++|...+.+..+.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8999999999999887643
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.57 E-value=5e-05 Score=58.46 Aligned_cols=120 Identities=11% Similarity=0.086 Sum_probs=76.3
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 038109 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA-CRAGR--VEEA 227 (324)
Q Consensus 151 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~a 227 (324)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655543 346667777777777777777777777777666544 566666666653 55555 4777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC
Q 038109 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (324)
.+++++..+... -+...+..+...+...|++++|...|+.+.+..
T Consensus 130 ~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777777765432 244555666666777777777777777776653
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=4.9e-05 Score=60.10 Aligned_cols=289 Identities=15% Similarity=0.119 Sum_probs=178.5
Q ss_pred ccccCCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhh-hhchh
Q 038109 3 LLRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFI-TNTEN 81 (324)
Q Consensus 3 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~ 81 (324)
++.++.+..++.++.+++..+.+... .+....+.+-.+|-...++..|-+.++++... .|...-|... ...+-
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p----~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSP----RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 34455566677778777777666552 25566778888888899999999999988653 3444333221 22233
Q ss_pred hhhhHHHHHHHHHHHhcC------------------------------CC---CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038109 82 SLSVLSDLCRTLARLDKG------------------------------FP---RKSAYDTLIGRLCKLKKIDEALRVVDI 128 (324)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~------------------------------~p---~~~~~~~li~~~~~~~~~~~a~~~~~~ 128 (324)
+.+.+..|.++...|... .| +..+.+...-...+.|+++.|.+-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 344444444444433211 01 111222223334577999999999999
Q ss_pred HHh-CCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC-------------C---------------HHHHHHH
Q 038109 129 MAE-GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP-------------D---------------LTAYNYL 179 (324)
Q Consensus 129 m~~-~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-------------~---------------~~~~~~l 179 (324)
..+ .|.. ....|+..+..| +.|+.+.|++...++.+.|+.. | +..+|.-
T Consensus 170 AlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 170 ALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 887 4555 456788777665 5688999999999998877532 2 1223433
Q ss_pred HHHHHhcCChhhHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038109 180 LTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258 (324)
Q Consensus 180 i~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 258 (324)
...+.+.++++.|.+.+-+|.-+ ....|.+|...+.-.=. .+++-+..+-+.-+..... ....||..++-.||++.-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 44456789999999988888643 23456677665543322 3445555555555554433 345799999999999999
Q ss_pred HHHHHHHHHHhCCCCCC-cCHhHHHHHHHHHhC-cCCHHHHHHHHH
Q 038109 259 YAQAVKFVMVCGGRDIK-LDTELFGSLGSKLIG-LERFNEANFILK 302 (324)
Q Consensus 259 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~ 302 (324)
++.|-.++.+-...-++ .+...|+ |++++.- .-..++|.+-++
T Consensus 326 f~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~ 370 (459)
T KOG4340|consen 326 FDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLD 370 (459)
T ss_pred HhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHH
Confidence 99999988664443222 3555565 4444443 344555554443
No 102
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.55 E-value=0.00047 Score=60.28 Aligned_cols=273 Identities=12% Similarity=0.068 Sum_probs=160.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHH
Q 038109 31 DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTL 109 (324)
Q Consensus 31 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~l 109 (324)
..-+.+.|..+--.+....++++|.+.|...+.-+ +.|...+.-+.-.-++.|+++.....-..+.+..|+ ...|..+
T Consensus 71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 34455667777766777788899999988888753 445577777777778888888888777777666665 4478888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCC-CCCChhhHHHHHH------HHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEGG-FGLSAITFHPILS------VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 182 (324)
..++.-.|+...|..++++..+.. -.|+...|.-... ...+.|..++|.+.+..-... +......-.+-...
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHH
Confidence 888899999999999999988754 2455554443332 223344444444443332221 11111112233334
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhc-CC----------------------------------HHH
Q 038109 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALV-LGACRA-GR----------------------------------VEE 226 (324)
Q Consensus 183 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~~-g~----------------------------------~~~ 226 (324)
+.+.+++++|..++..+...+ ||...|+... .++.+- +. .+.
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~ 306 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEI 306 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHH
Confidence 444555555555555544432 2222222211 111100 00 000
Q ss_pred HHHHHHHHHHCCC----------------------------------------------CcCHH--HHHHHHHHHHhcCC
Q 038109 227 AFVLLRRMVDDGQ----------------------------------------------SVLYS--TYAHVMGALLRLGY 258 (324)
Q Consensus 227 a~~~~~~m~~~~~----------------------------------------------~p~~~--~~~~li~~~~~~g~ 258 (324)
.-+++..+.+.|+ +|+.. |+-.+++.+-+.|+
T Consensus 307 vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 1111111111111 23332 33446677778999
Q ss_pred HHHHHHHHHHhCCCCCCcC-HhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q 038109 259 YAQAVKFVMVCGGRDIKLD-TELFGSLGSKLIGLERFNEANFILKEMNKRDL 309 (324)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 309 (324)
++.|..+++....+ .|+ +..|..=.+.+...|++++|...+++..+.+.
T Consensus 387 ~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 387 YEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 99999999988876 333 44555556888899999999999998775543
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=1.2e-05 Score=68.80 Aligned_cols=221 Identities=12% Similarity=0.007 Sum_probs=167.9
Q ss_pred chhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHH
Q 038109 79 TENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157 (324)
Q Consensus 79 ~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 157 (324)
-+.+.|++.+|.-+|+......| +..+|..|.......++-..|+..+++..+.... +....-.|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 35678889999999999887778 5669999999999999999999999999885433 567777788888899999999
Q ss_pred HHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCChhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038109 158 WGLMEVMKEIRVS--------PDLTAYNYLLTAYCFKGNLTATSGVLKKMEE-EKLGADARTYDALVLGACRAGRVEEAF 228 (324)
Q Consensus 158 ~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~ 228 (324)
.+.++.......+ ++...-+. ..+.....+....++|-++.. .+..+|......|--.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999988665321 01100000 122222334556666666654 444578888888888899999999999
Q ss_pred HHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 229 VLLRRMVDDGQSV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 229 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
+.|+..+.. +| |..+||.|-..++...+.++|+..|++.++..+.- +.+...|.-.|...|.+++|.+.|-+..
T Consensus 451 Dcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999998864 45 56788999999999999999999999998864332 3444457788999999999999887653
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.53 E-value=0.00045 Score=59.22 Aligned_cols=101 Identities=14% Similarity=0.014 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHH
Q 038109 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK 287 (324)
Q Consensus 209 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (324)
.+|...++.-.+..-+..|..+|.+..+.+..+ +....++++..++. ++..-|.++|+--.+. +.-++.--...++-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 456677777777888889999999999887777 66777777777665 6788899998766554 22244444566778
Q ss_pred HhCcCCHHHHHHHHHHHHhCCCch
Q 038109 288 LIGLERFNEANFILKEMNKRDLKM 311 (324)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~~~~~ 311 (324)
+...|+-..|..+|++....++.|
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCCh
Confidence 888899999999999998885554
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00014 Score=56.60 Aligned_cols=229 Identities=13% Similarity=0.055 Sum_probs=149.5
Q ss_pred hhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHH
Q 038109 77 TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156 (324)
Q Consensus 77 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 156 (324)
++-+.-.|.+..+...-........+...-.-+-++|...|.+..... +.... -.|.......+-.....-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhHH
Confidence 344555677777766655543332223333344566666666543332 22222 23344444444443433444443
Q ss_pred HH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 157 AW-GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 157 a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
-. ++.+.+.......+......-...|+..|++++|++...... +....-.=+..+.+..+++-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 445555555555555555555677899999999998887622 33333333556778889999999999998
Q ss_pred HCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCch
Q 038109 236 DDGQSVLYSTYAHVMGALLR----LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311 (324)
Q Consensus 236 ~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 311 (324)
+- -+..|.+.|.+++.+ .+.+..|.-+|++|.+. ..|++.+.+...-++...|++++|..++++..+++-.-
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 53 456778877777663 45788999999999885 57899999999999999999999999999998887665
Q ss_pred hHHHHHHH
Q 038109 312 GFKLRDYY 319 (324)
Q Consensus 312 ~~~~~~~~ 319 (324)
...+.+..
T Consensus 241 petL~Nli 248 (299)
T KOG3081|consen 241 PETLANLI 248 (299)
T ss_pred HHHHHHHH
Confidence 55555443
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=1.9e-05 Score=71.87 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=100.8
Q ss_pred CCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038109 66 CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI 144 (324)
Q Consensus 66 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 144 (324)
.+.++..+..|..+..+.|..++|..+++.+.+..|+.. .+..+...+.+.+++++|+..+++..+.... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 456677777788888888888888888888877777544 6677778888888888888888888775433 55666667
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 145 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
..++.+.|++++|..+|++....+ +-+..++..+..++...|+.++|...|+...+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777778888888888888887743 234677777777888888888888888777654
No 107
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.51 E-value=2.4e-07 Score=49.38 Aligned_cols=33 Identities=45% Similarity=0.801 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 038109 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242 (324)
Q Consensus 210 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 242 (324)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=1.5e-05 Score=58.01 Aligned_cols=90 Identities=6% Similarity=-0.138 Sum_probs=38.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 189 (324)
...+...|++++|...|+....... .+...|..+...+.+.|++++|...|+...+.. +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 3344444444444444444443321 133444444444444444444444444444432 12334444444444444444
Q ss_pred hhHHHHHHHHHH
Q 038109 190 TATSGVLKKMEE 201 (324)
Q Consensus 190 ~~a~~~~~~m~~ 201 (324)
++|...|+...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 109
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.49 E-value=2.6e-07 Score=49.22 Aligned_cols=33 Identities=39% Similarity=0.666 Sum_probs=24.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS 137 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 137 (324)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=6.2e-05 Score=69.65 Aligned_cols=228 Identities=12% Similarity=0.103 Sum_probs=151.9
Q ss_pred chhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038109 70 ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148 (324)
Q Consensus 70 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 148 (324)
...+..|+..+...+++++|.++.+...+..|+.. .|-.+...+.+.++..++.-+ .++...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhc
Confidence 36777888888888888888888887777777654 344444466666665544433 334444
Q ss_pred HccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038109 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228 (324)
Q Consensus 149 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 228 (324)
....++..+..+...|...+ -+...+-.+..+|-+.|+.++|..+|+++.+..+. |....|.+...|+.. ++++|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHH
Confidence 45555655555666666643 35567888999999999999999999999999865 899999999999999 999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHH---HHH--hcCCHHHHHHHHHHhCCC-CCCcCHhHHHHHHHHHhCcCCHHHHHHHHH
Q 038109 229 VLLRRMVDDGQSVLYSTYAHVMG---ALL--RLGYYAQAVKFVMVCGGR-DIKLDTELFGSLGSKLIGLERFNEANFILK 302 (324)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~li~---~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (324)
+++.+....- .+..-|+.+.. -++ ...+++.-.++.+.+... |..--..++-.+...|-..++++++..+|+
T Consensus 170 ~m~~KAV~~~--i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 170 TYLKKAIYRF--IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred HHHHHHHHHH--HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9998876541 11111111111 111 222344444444444433 334445666677788889999999999999
Q ss_pred HHHhCCCc---hhHHHHHHHh
Q 038109 303 EMNKRDLK---MGFKLRDYYE 320 (324)
Q Consensus 303 ~m~~~~~~---~~~~~~~~~~ 320 (324)
.+.+..-. .-..+...|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 99765433 3444444443
No 111
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.48 E-value=2.8e-07 Score=48.77 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 205 (324)
+|++++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.00041 Score=66.72 Aligned_cols=267 Identities=13% Similarity=0.022 Sum_probs=169.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC------CCCc--hhhHhhhhchhhhhhHHHHHHHHHHHhcCCC--CH----HH
Q 038109 40 DLVNAAGHERDLETVRYLLNKRARDCC------FNTA--NTFNFITNTENSLSVLSDLCRTLARLDKGFP--RK----SA 105 (324)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~----~~ 105 (324)
.....+...|+++++...+....+.-- .+.. .....+...+...|++++|...++......+ +. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 334445678899999999887754310 1111 1122233455678999999999988754333 21 24
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHHh----CCCC--C-CH
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAEG----GFG-LSAITFHPILSVLTRGKRMEEAWGLMEVMKE----IRVS--P-DL 173 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--~-~~ 173 (324)
.+.+...+...|++++|...+++.... |.. +...++..+...+...|+++.|...+++... .+.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 566677788899999999999888742 111 1123445566677889999999998887554 2221 1 23
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHH
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEE----KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQSVLYST 245 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~ 245 (324)
..+..+...+...|++++|...+++.... +.......+..+...+...|+.++|.+.++..... +..+....
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 34455566677889999999998876542 21112344555667788899999999998887542 11111101
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHhCCCCCCcC---HhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 246 Y--AHVMGALLRLGYYAQAVKFVMVCGGRDIKLD---TELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 246 ~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
. ...+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++...
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 1122445568999999999877655322111 11134567788899999999999998754
No 113
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.00057 Score=58.45 Aligned_cols=130 Identities=16% Similarity=0.135 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHHHCCCCcCHHH---
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV-------LGACRAGRVEEAFVLLRRMVDDGQSVLYST--- 245 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-------~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--- 245 (324)
++..-.+|...|.+.++...-+...+.|-. ...-|+.+. .+|.+.++++.+...|.+....-..|+..+
T Consensus 260 ~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk 338 (539)
T KOG0548|consen 260 LNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLK 338 (539)
T ss_pred HHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHH
Confidence 344444455555544444444433333322 222233322 345556677777777776554433333221
Q ss_pred ----------------------HHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHH
Q 038109 246 ----------------------YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 246 ----------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
...=-..+.+.|++..|...+.++.... +-|...|..-.-+|.+.|.+..|++=.+.
T Consensus 339 ~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 339 EAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0111334557788888888888888876 34788888888888888888887775554
Q ss_pred HHhC
Q 038109 304 MNKR 307 (324)
Q Consensus 304 m~~~ 307 (324)
-.+.
T Consensus 418 ~ieL 421 (539)
T KOG0548|consen 418 CIEL 421 (539)
T ss_pred HHhc
Confidence 4433
No 114
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.46 E-value=0.00082 Score=58.89 Aligned_cols=288 Identities=9% Similarity=0.091 Sum_probs=178.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC------CCCCchhhHhhhhchhhhhhHH
Q 038109 14 PQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDC------CFNTANTFNFITNTENSLSVLS 87 (324)
Q Consensus 14 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~~~~~~~~~~~ 87 (324)
.-+..+++.+..+. |. .-+-.|..+++.+++++|.+.+...+... .+.+...|..+.+..++..+.-
T Consensus 155 ets~rvyrRYLk~~-----P~--~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~ 227 (835)
T KOG2047|consen 155 ETSIRVYRRYLKVA-----PE--AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV 227 (835)
T ss_pred HHHHHHHHHHHhcC-----HH--HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh
Confidence 34445555444443 22 25666777788888888888887765431 2444455665555544443332
Q ss_pred ---HHHHHHHHHhcCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC----------
Q 038109 88 ---DLCRTLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK---------- 152 (324)
Q Consensus 88 ---~a~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------- 152 (324)
....+++.....++|.. .|++|.+-|.+.|.+++|..+|++..+.-. +..-|+.+.+.|+.-.
T Consensus 228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~ 305 (835)
T KOG2047|consen 228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMEL 305 (835)
T ss_pred cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 23344445555567655 799999999999999999999999877532 3444555555554321
Q ss_pred ------------cHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC---
Q 038109 153 ------------RMEEAWGLMEVMKEIRV-----------SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA--- 206 (324)
Q Consensus 153 ------------~~~~a~~~~~~m~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--- 206 (324)
+++-...-|+.+...+. +.++..|..-+.. ..|+..+...+|.+..+. +.|
T Consensus 306 a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka 382 (835)
T KOG2047|consen 306 ADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKA 382 (835)
T ss_pred hhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccC
Confidence 12233334444433221 1234445444333 456677777777777654 222
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC-------
Q 038109 207 ---DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL---YSTYAHVMGALLRLGYYAQAVKFVMVCGGRD------- 273 (324)
Q Consensus 207 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------- 273 (324)
-...|..+...|-.+|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.|.++.+.....-
T Consensus 383 ~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~ 462 (835)
T KOG2047|consen 383 VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEY 462 (835)
T ss_pred CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhh
Confidence 235688888899999999999999998876533211 3445555555557788899998887664321
Q ss_pred ----CCc------CHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhH
Q 038109 274 ----IKL------DTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313 (324)
Q Consensus 274 ----~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 313 (324)
-++ +...|...++.....|-++....+++++.+..+-.++
T Consensus 463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq 512 (835)
T KOG2047|consen 463 YDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ 512 (835)
T ss_pred hcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH
Confidence 011 2345666666667788999999999999887775433
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=0.00064 Score=57.57 Aligned_cols=200 Identities=14% Similarity=0.046 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHH
Q 038109 83 LSVLSDLCRTLARLDKGF----PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 158 (324)
..++..+....+.++... |+...+...+.+......-..+-.++.+-.+. .-...-|..-+. +...|+.++|+
T Consensus 250 ~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~ 326 (484)
T COG4783 250 EERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEAL 326 (484)
T ss_pred hhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHH
Confidence 344555555555554322 45555666666554444333333333332221 112233443333 44678889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038109 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238 (324)
Q Consensus 159 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 238 (324)
..++.+.+.- +-|..........+.+.++..+|.+.++++....+. .....-.+..+|.+.|++.+|..+++.....
T Consensus 327 ~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~- 403 (484)
T COG4783 327 KLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN- 403 (484)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Confidence 9999887753 335666667778888999999999999988877433 2566677788899999999999998887754
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 239 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.+-|+..|..|.++|...|+..++..... +.|...|+++.|...+....+
T Consensus 404 ~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 404 DPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred CCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence 34567888889999999998887766443 334445666666665555543
No 116
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.44 E-value=0.00041 Score=62.82 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=121.4
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHH
Q 038109 81 NSLSVLSDLCRTLARLDKGFPRKSAYDTLIGR--LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158 (324)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 158 (324)
...+++..|.+...++.+..|+.. |..++.+ ..+.|+.++|..+++.....+.. |..|...+-..|...++.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 345566666666666666666544 2222222 34667777777776666554444 6667777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHH
Q 038109 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR----------VEEAF 228 (324)
Q Consensus 159 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~ 228 (324)
.+|++..+. .|+......+..+|.+.+++.+-.++--+|-+.-+. +...+=++++...+.-. ..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 777776654 355666666666777776665544444344332111 33333334444333211 12344
Q ss_pred HHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHH-HHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 229 VLLRRMVDDG-QSVLYSTYAHVMGALLRLGYYAQAVKFV-MVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 229 ~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
+.++.+.+.+ -.-+..-...-...+...|.+++|++++ ....+.-..-+...-+.-++.+...+++.+..++..++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5555555443 1112222222233445567777777776 3333332233344444555666667777777777666666
Q ss_pred CCCch
Q 038109 307 RDLKM 311 (324)
Q Consensus 307 ~~~~~ 311 (324)
+|-.-
T Consensus 255 k~~Dd 259 (932)
T KOG2053|consen 255 KGNDD 259 (932)
T ss_pred hCCcc
Confidence 55443
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.43 E-value=1.8e-05 Score=57.56 Aligned_cols=93 Identities=10% Similarity=-0.183 Sum_probs=48.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 257 (324)
.+...+...|++++|...|+......+. +...|..+..++.+.|++++|...|++..... +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3444555555555555555555554333 45555555555555555555555555555432 123444455555555555
Q ss_pred CHHHHHHHHHHhCCC
Q 038109 258 YYAQAVKFVMVCGGR 272 (324)
Q Consensus 258 ~~~~a~~~~~~~~~~ 272 (324)
+.++|...++.....
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555443
No 118
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.43 E-value=5.5e-07 Score=47.60 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 038109 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241 (324)
Q Consensus 209 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 241 (324)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00035 Score=54.13 Aligned_cols=187 Identities=13% Similarity=0.037 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHh---cC-CCCCch-hhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCHHH
Q 038109 48 ERDLETVRYLLNKRAR---DC-CFNTAN-TFNFITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDE 121 (324)
Q Consensus 48 ~~~~~~a~~~~~~m~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~ 121 (324)
..+.++..+++.+++. .| ..++.. .|..++-+....|+.+.|...+..+...+|... +-..-..-+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 3455555666655542 23 344542 445556666677777777777777776666433 21111222334577777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 038109 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201 (324)
Q Consensus 122 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 201 (324)
|+++++.+.+.. +-|..++--=+-..-..|+..+|.+-+....+. +..|...|.-+-..|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888887777765 235555555555555556666676666666554 456777777777888888888888777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 038109 202 EKLGADARTYDALVLGACRA---GRVEEAFVLLRRMVDD 237 (324)
Q Consensus 202 ~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 237 (324)
..+. +..-+..+...+--. .+.+-+.+.|.+..+.
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5332 333344444443332 3455666777666643
No 120
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.41 E-value=8.4e-06 Score=69.16 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038109 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEG--GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179 (324)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 179 (324)
+......+++.+....+++.+..++-+.+.. ....-..|.+++++.|.+.|..+++..++..=...|+-||..++|.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5557777888888888888888888888765 22233456678888888888888888888888888888888888888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038109 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221 (324)
Q Consensus 180 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 221 (324)
|+.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887777666777777766666655
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.39 E-value=4.5e-05 Score=55.69 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHH
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD--ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL--YSTYAHV 249 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l 249 (324)
..|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+........|+ ......+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555554 36777777777777776543311 12233344667777888888888877776552222 1233445
Q ss_pred HHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHH
Q 038109 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
...+...|++++|+..++...... ..+..+....+.|.+.|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666777788888887776644433 2444566677777788888888777764
No 122
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.39 E-value=8.6e-06 Score=54.60 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=15.2
Q ss_pred ccCcHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 038109 150 RGKRMEEAWGLMEVMKEIRV-SPDLTAYNYLLTAYC 184 (324)
Q Consensus 150 ~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~ 184 (324)
..+++.....+|+.+++.|+ .|+..+|+.++.+.+
T Consensus 37 ~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 37 ENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred hhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 33444444444444444444 444444444444433
No 123
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.39 E-value=2e-05 Score=66.96 Aligned_cols=123 Identities=12% Similarity=0.046 Sum_probs=106.8
Q ss_pred cCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChh
Q 038109 64 DCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP----RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI 139 (324)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 139 (324)
.+.+.++.....+++.+....+++.+..++-++..... -..+..++++.|.+.|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 34566777888899999999999999999998865421 12255799999999999999999999999999999999
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038109 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186 (324)
Q Consensus 140 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 186 (324)
+++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999888777888888777777776
No 124
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00027 Score=64.93 Aligned_cols=139 Identities=9% Similarity=0.093 Sum_probs=62.3
Q ss_pred hhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 038109 72 TFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151 (324)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 151 (324)
.|+.+..+-.+.|.+.+|.+-|-+. .|...|..+++...+.|.+++-.+.+...++..-.|... +.+|-+|++.
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT 1179 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh
Confidence 3444444444444444444433322 233344555555555555555555554444443333322 3344455555
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 231 (324)
++..+.++... -||......+.+-|...|.++.|.-+|. ++.-|..|...++..|+++.|...-
T Consensus 1180 ~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1180 NRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred chHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 54444333221 1333333344444444444444433332 2334555666666666666655443
Q ss_pred H
Q 038109 232 R 232 (324)
Q Consensus 232 ~ 232 (324)
+
T Consensus 1244 R 1244 (1666)
T KOG0985|consen 1244 R 1244 (1666)
T ss_pred h
Confidence 3
No 125
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.0006 Score=55.47 Aligned_cols=84 Identities=7% Similarity=-0.146 Sum_probs=57.8
Q ss_pred CCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHH
Q 038109 9 TKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSD 88 (324)
Q Consensus 9 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (324)
....+..|..+++.-.... ..-...+=-.+..++.+.|++++|...+..+... -.++...+-.|..++.-.|.+.+
T Consensus 34 s~rDytGAislLefk~~~~---~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLD---REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred hcccchhHHHHHHHhhccc---hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHH
Confidence 3445566666665554333 1222223334555677999999999999988775 36777777788888888999999
Q ss_pred HHHHHHHH
Q 038109 89 LCRTLARL 96 (324)
Q Consensus 89 a~~~~~~~ 96 (324)
|..+..+.
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 99887765
No 126
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.37 E-value=1.1e-05 Score=54.11 Aligned_cols=79 Identities=9% Similarity=0.205 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCcCHHHHH
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKL-GADARTYDALVLGACRAG--------RVEEAFVLLRRMVDDGQSVLYSTYA 247 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~ 247 (324)
...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+-++.. +.-+.+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555666888888888888888888 888888888888876642 2345677888888888888888888
Q ss_pred HHHHHHHh
Q 038109 248 HVMGALLR 255 (324)
Q Consensus 248 ~li~~~~~ 255 (324)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=4.2e-05 Score=64.66 Aligned_cols=125 Identities=17% Similarity=0.095 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 254 (324)
....++..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +-+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556667777889999999999998874 44 44557788888888899999998888542 235556665666788
Q ss_pred hcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
+.++.+.|..+.+++.+..+ -+..+|..|..+|.+.|++++|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999988743 366799999999999999999999888775
No 128
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.35 E-value=0.00091 Score=54.25 Aligned_cols=264 Identities=8% Similarity=0.002 Sum_probs=180.7
Q ss_pred HHHHHHH---HHhcCCCHHHHHHHHHHHHhcCCCCCchhh-HhhhhchhhhhhHHHHHHHHHHHhcCCCCHH----H---
Q 038109 37 YYDDLVN---AAGHERDLETVRYLLNKRARDCCFNTANTF-NFITNTENSLSVLSDLCRTLARLDKGFPRKS----A--- 105 (324)
Q Consensus 37 ~~~~ll~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~--- 105 (324)
.|.++.+ .|...|+-..|+.=+...++ .+||-..- -.-...+.+.|.++.|..-|+.+....|+.. +
T Consensus 71 ~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqsk 148 (504)
T KOG0624|consen 71 NYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSK 148 (504)
T ss_pred hHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 3555443 55666777777777777666 35665322 2235567889999999999999876655221 1
Q ss_pred -------H--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHH
Q 038109 106 -------Y--DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176 (324)
Q Consensus 106 -------~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 176 (324)
| ...+..+...|+...|++....+.+. .+.|...|..-..+|...|++..|..=++...+..-. ++.++
T Consensus 149 l~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ 226 (504)
T KOG0624|consen 149 LALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGH 226 (504)
T ss_pred HHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHH
Confidence 2 23455667789999999999999886 3357788888888999999999998877777665433 55566
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCc--
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADART----YDAL---------VLGACRAGRVEEAFVLLRRMVDDGQSV-- 241 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l---------i~~~~~~g~~~~a~~~~~~m~~~~~~p-- 241 (324)
--+-..+...|+.+.++...++..+.+ ||... |-.+ +......++|.++.+-.+...+.....
T Consensus 227 ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 227 YKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 666777888999999999988888763 44322 1111 122345677777877777766553221
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 242 -LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 242 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
....+..+-.++...|++.+|++...+..+.. +.|+.++.-=..+|.-...+|.|+.=|+...+.
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 22334555666777889999999888888753 224777777778888888888888877766543
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00064 Score=52.71 Aligned_cols=186 Identities=13% Similarity=0.041 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHHHh----cC--CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHH
Q 038109 84 SVLSDLCRTLARLD----KG--FPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156 (324)
Q Consensus 84 ~~~~~a~~~~~~~~----~~--~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 156 (324)
.+.++..+++..+. .+ .|+.. .|..++-+....|+.+.|..+++++.+. ++-+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 44566666666652 22 14433 6777888888999999999999999886 33233322222223445689999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 157 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
|.++++.+.+.+ +.|.+++---+...-..|+.-+|++-+.+..+.-+ .|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999886 55778888777777788888899998888887644 4999999999999999999999999999985
Q ss_pred CCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHhCCCC
Q 038109 237 DGQSVLYSTYAHVMGALLRLG---YYAQAVKFVMVCGGRD 273 (324)
Q Consensus 237 ~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~ 273 (324)
.. +.++..|..+...+.-.| +...+.+++....+..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 42 234455555655544444 5667888888887754
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=5e-05 Score=54.72 Aligned_cols=58 Identities=14% Similarity=0.013 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 234 (324)
+..+..++...|++++|...++...+.+.. +...+..+...+...|++++|...|+..
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333334444444443333333211 2333333333333444444444444333
No 131
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.33 E-value=0.00042 Score=61.70 Aligned_cols=240 Identities=12% Similarity=-0.003 Sum_probs=161.3
Q ss_pred cCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-ChhhH
Q 038109 64 DCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL-SAITF 141 (324)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~ 141 (324)
..+..|+..|..+.-+....|+++.+.+.|++.... +.....|+.+...|...|.-..|..+++.-......| +...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 346678889999999999999999999999987543 3566789999999999999999999998776544334 44444
Q ss_pred HHHHHHHH-ccCcHHHHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHhcC-----------ChhhHHHHHHHHHHCCCC
Q 038109 142 HPILSVLT-RGKRMEEAWGLMEVMKEI--R--VSPDLTAYNYLLTAYCFKG-----------NLTATSGVLKKMEEEKLG 205 (324)
Q Consensus 142 ~~li~~~~-~~~~~~~a~~~~~~m~~~--~--~~~~~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~~~~~ 205 (324)
-..-..|. +.+..++++++-.+.... + -......|..+.-+|...- ...++.+.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444444 446777777766665552 1 1123344544544554321 235677788888776554
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHH
Q 038109 206 ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG 285 (324)
Q Consensus 206 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 285 (324)
|....-.+.--|+..++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+...+. ..-|......-+
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKI 554 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhh
Confidence 333333344457778899999999999998866678888888888899999999999998766443 111222222223
Q ss_pred HHHhCcCCHHHHHHHHHHHH
Q 038109 286 SKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m~ 305 (324)
..-...|+.+++......+.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKL 574 (799)
T ss_pred hhhhhcccHHHHHHHHHHHH
Confidence 33334577777776665553
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.33 E-value=4.3e-05 Score=55.06 Aligned_cols=97 Identities=15% Similarity=0.030 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 253 (324)
.....+...+...|++++|.+.|+.....+.. +...+..+...+...|++++|...++...+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 33444555555666666666666665554433 45555556666666666666666666554432 22344444455555
Q ss_pred HhcCCHHHHHHHHHHhCCC
Q 038109 254 LRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~ 272 (324)
...|+++.|...++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666555553
No 133
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.0018 Score=56.27 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=59.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHH--HHHH--HccC
Q 038109 42 VNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTL--IGRL--CKLK 117 (324)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~l--i~~~--~~~~ 117 (324)
++.+.+.+++++|.+...+++..+ +.+...+..-+-+..+.+.+++|..+.+.-.. ..+++.. =.+| .+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~----~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA----LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch----hhhcchhhHHHHHHHHHcc
Confidence 344566667777777777776653 44445555556666677777777654443211 1111111 2222 3445
Q ss_pred CHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCcHHHHHHHHHHHHhC
Q 038109 118 KIDEALRVVDIMAEGGFGLS-AITFHPILSVLTRGKRMEEAWGLMEVMKEI 167 (324)
Q Consensus 118 ~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 167 (324)
..++|+..++ |..++ ..+...-.+.+.+.+++++|..+|+.+.+.
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5666665555 22222 223444445555666666666666655443
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=6.3e-05 Score=63.64 Aligned_cols=125 Identities=19% Similarity=0.123 Sum_probs=102.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
.-..++..+...++++.|..+|+++.+.. |+ ....+...+...++..+|.+++++..+.. +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34567778888899999999999999874 34 45567888888889999999999888653 336677777778899
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
+.++++.|..+.+++.+..+. +-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999987443 56799999999999999999999998775
No 135
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.28 E-value=0.00095 Score=59.57 Aligned_cols=280 Identities=16% Similarity=0.101 Sum_probs=179.5
Q ss_pred HHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHH
Q 038109 16 SVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLAR 95 (324)
Q Consensus 16 a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 95 (324)
+++.++.-.... +-.|++..|-++- ++..++++.|.+..++..+-+-..++..|..+.-.+...+++.+|+.+.+.
T Consensus 463 slqale~av~~d--~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 463 SLQALEEAVQFD--PTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHhcC--CCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 344444333333 2335554444443 778889999999999999886678889999999999999999999999888
Q ss_pred HhcCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHh---------------------CCCC-----C--ChhhHHHHHH
Q 038109 96 LDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAE---------------------GGFG-----L--SAITFHPILS 146 (324)
Q Consensus 96 ~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~---------------------~g~~-----~--~~~~~~~li~ 146 (324)
.....|+.. -...=++.-...++.++++.....+.. .|+. | ...++.-+..
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 765554322 111112222224444444444333221 0100 0 1112222221
Q ss_pred HHHccCcHHHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038109 147 VLTRGKRMEEAWGLMEVMKEIRVSP--D------LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218 (324)
Q Consensus 147 ~~~~~~~~~~a~~~~~~m~~~~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 218 (324)
-... +...+..-.. +...-..| + ...|......+.+.+..++|...+.+.....+. ....|......+
T Consensus 619 l~a~--~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 619 LVAS--QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLL 694 (799)
T ss_pred HHHh--hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHH
Confidence 1110 0000000000 11111112 2 234556677788889999998888877765332 567777777888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHH--HHHHhCCCCCCcCHhHHHHHHHHHhCcCCHH
Q 038109 219 CRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVK--FVMVCGGRDIKLDTELFGSLGSKLIGLERFN 295 (324)
Q Consensus 219 ~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 295 (324)
...|..++|.+.|.....- .|+ ..+.+++...+.+.|+...|.. ++.++.+.++ .+...|..+...+-+.|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchH
Confidence 8999999999999887753 343 5667788899999999888888 9999999874 48999999999999999999
Q ss_pred HHHHHHHHHHh
Q 038109 296 EANFILKEMNK 306 (324)
Q Consensus 296 ~a~~~~~~m~~ 306 (324)
.|-+.|+.-.+
T Consensus 772 ~Aaecf~aa~q 782 (799)
T KOG4162|consen 772 QAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHh
Confidence 99999987643
No 136
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00029 Score=57.24 Aligned_cols=197 Identities=10% Similarity=0.042 Sum_probs=132.7
Q ss_pred hhhhchhhhhhHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHH
Q 038109 75 FITNTENSLSVLSDLCRTLARLDKGFPRKS-----AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA-ITFHPILSVL 148 (324)
Q Consensus 75 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~ 148 (324)
.|+--|.+.+++.+|..+...+....|-.. ++..+..-........-|.+.|+-.-+++..-|. .--.++.+.+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 455567889999999988887765444332 2333333333334566677777666666654332 2334555566
Q ss_pred HccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHH
Q 038109 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA-LVLGACRAGRVEEA 227 (324)
Q Consensus 149 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~a 227 (324)
.-..++++++-.+......-...|..-+ .+..+++..|++.+|.++|-......++ |..+|.+ |.++|.+++.++.|
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 6667788888888887765444344444 5778999999999999999877665555 6677754 56889999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHH-HHHHHHhcCCHHHHHHHHHHhCCCCCCc
Q 038109 228 FVLLRRMVDDGQSVLYSTYAH-VMGALLRLGYYAQAVKFVMVCGGRDIKL 276 (324)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (324)
++++-.+... .+..+... +..-|.+.+++--|-+.|+.+...++.|
T Consensus 448 W~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 448 WDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 9987665432 23333333 3456889999999999999888765433
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.26 E-value=0.0034 Score=57.19 Aligned_cols=225 Identities=15% Similarity=0.135 Sum_probs=153.1
Q ss_pred CCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhh
Q 038109 7 LPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAA--GHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS 84 (324)
Q Consensus 7 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 84 (324)
..+.+++.+|+.-..-+.... |-.+ |..+++++ .+.|+.++|..+++.....+. .|..|...+-.+|...+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHh
Confidence 345667777777666555544 2334 55555554 588999999999888776543 37789999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC----------cH
Q 038109 85 VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK----------RM 154 (324)
Q Consensus 85 ~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------~~ 154 (324)
..+++..+++.....+|+..-...+..+|.+.+++.+-.+.--+|-+. ++-+...+=++++.....- -.
T Consensus 92 ~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 999999999999999999777777888899888876655554444442 3335555555665554331 12
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 155 EEAWGLMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVLK-KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232 (324)
Q Consensus 155 ~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 232 (324)
.-|.+.++.+.+.+ -.-+..-.-.-.......|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34556666665544 21122222223344556888999999984 44444344455666677788888999999999998
Q ss_pred HHHHCCC
Q 038109 233 RMVDDGQ 239 (324)
Q Consensus 233 ~m~~~~~ 239 (324)
++...|.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 8887763
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.0007 Score=57.33 Aligned_cols=131 Identities=14% Similarity=0.025 Sum_probs=109.1
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHH
Q 038109 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYA 260 (324)
Q Consensus 182 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 260 (324)
.+...|++++|+..++.+....+. |..-+......+.+.|+.++|.+.++++... .|+ ....-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 445689999999999999887554 6777788889999999999999999999865 465 444555778999999999
Q ss_pred HHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHH
Q 038109 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLR 316 (324)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 316 (324)
+|..+++...... +-|+..|..|.++|...|+..++..-..+.....-.+..+.+
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAII 446 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999988875 459999999999999999999999999888766555555443
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.21 E-value=2.1e-06 Score=44.21 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q 038109 280 LFGSLGSKLIGLERFNEANFILKEMNKRDL 309 (324)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 309 (324)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677788888888888888888888877764
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.20 E-value=1.8e-06 Score=44.41 Aligned_cols=26 Identities=35% Similarity=0.779 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 211 YDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 211 ~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
|++++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33333333333333333333333333
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=0.00035 Score=50.98 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=60.3
Q ss_pred cCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 038109 151 GKRMEEAWGLMEVMKEIRVSP--DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA--RTYDALVLGACRAGRVEE 226 (324)
Q Consensus 151 ~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~ 226 (324)
.++...+...++.+.+..... .....-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555666666666665543111 0122223345556666666666666666665422221 233335556666666666
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038109 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268 (324)
Q Consensus 227 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (324)
|+..++...... .....+...-..+.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666665533222 2233444455566666666666666654
No 142
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.17 E-value=9.7e-05 Score=56.00 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 038109 92 TLARLDKGFPRKSAYDTLIGRLCKL-----KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150 (324)
Q Consensus 92 ~~~~~~~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 150 (324)
.|+.......+..+|..+++.|.+. |.++-....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 36 ~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 36 LFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 3444433334555666666666543 5566666666677777777677777777766543
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.00075 Score=60.83 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C--------CCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHH
Q 038109 36 AYYDDLVNAAGHERDLETVRYLLNKRARD-C--------CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAY 106 (324)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 106 (324)
..|..+.+.|.+.++++-|.-.+..|... | ..|+ .+-.-+.-.....|.+++|..++.+-++ |
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-------~ 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-------Y 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------H
Confidence 35777777777777777776666665431 1 1121 1111222233556677777777666544 4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 038109 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163 (324)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 163 (324)
..|=..|-..|.|++|.++-+.=.+-.+ ..||......+-..++.+.|++.|+.
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 5555566667777777766543222111 24455555555555666666665553
No 144
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.12 E-value=0.00031 Score=62.45 Aligned_cols=165 Identities=14% Similarity=0.093 Sum_probs=88.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 038109 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 194 (324)
..+.|.+|+.+++.+..... -..-|..+.+.|...|+++-|+++|-+. ..++-.|.+|.+.|+|++|.+
T Consensus 744 ~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHH
Confidence 33444555555544444322 1223445555566666666665555432 123445566666666666665
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCC
Q 038109 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI 274 (324)
Q Consensus 195 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (324)
+-.+.. |.......|-+-..-+-++|++.+|.++|-.. | .|+. .|+.|-+.|..+...++...-...-
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~- 880 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH- 880 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhChhh-
Confidence 543332 33334445555555555666666666655332 1 2433 3466667777776666655433221
Q ss_pred CcCHhHHHHHHHHHhCcCCHHHHHHHHHHH
Q 038109 275 KLDTELFGSLGSKLIGLERFNEANFILKEM 304 (324)
Q Consensus 275 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (324)
-..|...+..-|...|+...|..-|-+.
T Consensus 881 --l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 881 --LHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred --hhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 2344556677777888888888777554
No 145
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00088 Score=58.02 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=87.3
Q ss_pred hhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcH
Q 038109 76 ITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154 (324)
Q Consensus 76 l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 154 (324)
=++.+...+++++|.+...++....|| ...+..-+-++++.+++++|+++.+.-... ..+..-+.-=.-+..+.+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 356678899999999999999888885 557888888999999999999665443211 11111111112334578999
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 038109 155 EEAWGLMEVMKEIRVSPD-LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL 204 (324)
Q Consensus 155 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 204 (324)
++|...++ |..++ ..+...-...+.+.|++++|..+|+.+.+.+.
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 99999988 33333 33555666788899999999999999987654
No 146
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.03 E-value=0.00012 Score=55.56 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=39.5
Q ss_pred ChhhHHHHHHHHH-----ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038109 137 SAITFHPILSVLT-----RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185 (324)
Q Consensus 137 ~~~~~~~li~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 185 (324)
+..+|..+++.|. +.|..+-....+..|.+-|+.-|..+|+.|++.+-+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 6677777777775 347788888888889999998899999999988775
No 147
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0018 Score=59.86 Aligned_cols=202 Identities=12% Similarity=0.125 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038109 36 AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCK 115 (324)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~ 115 (324)
..|..+.++-.+.|.+..|.+-|-+ ..|+..|..+++...+.|.+++..+++...++......+=+.||-+|++
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 4588888888888888888776532 2467789999999999999999999998886655444445688999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 038109 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 195 (324)
.+++.+.++.+ ..|+......+.+-|...+.++.|.-+|... .-|..+...+...|++..|..-
T Consensus 1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 99998876654 3467777777888888888888887777643 3466666667777777776654
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q 038109 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 196 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (324)
-++. -+..||-.+-.+|...+.+.-| +|....+.....-..-++..|...|-+++...+++...
T Consensus 1243 aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1243 ARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 3332 2556666666666655544433 22222333344444555666666666666555554443
No 148
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.002 Score=51.41 Aligned_cols=175 Identities=15% Similarity=0.064 Sum_probs=89.5
Q ss_pred hhhchhhhhhHHHHHHHHHHHhcCCCCHH-H---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-
Q 038109 76 ITNTENSLSVLSDLCRTLARLDKGFPRKS-A---YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR- 150 (324)
Q Consensus 76 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~- 150 (324)
....+...|++++|.+.|+.+....|+.. . .-.++.++.+.+++++|...+++..+.-..-...-|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445667777777777777777666443 2 234566777777788888777777764322111223333333221
Q ss_pred -cC---------------cH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHH
Q 038109 151 -GK---------------RM---EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211 (324)
Q Consensus 151 -~~---------------~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 211 (324)
.+ +. .+|...| ..++.-|-...-..+|...+..+... =...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~---------------~~li~~yP~S~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDF---------------SKLVRGYPNSQYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHH---------------HHHHHHCcCChhHHHHHHHHHHHHHH----HHHHH
Confidence 00 11 1222222 33333333333344444433333321 00111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 212 DALVLGACRAGRVEEAFVLLRRMVDD--GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 212 ~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
-.+..-|.+.|.+.-|..-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 13445566667777677666666654 33334455556666777777777766655444
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.97 E-value=0.00029 Score=46.59 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=8.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 038109 214 LVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 214 li~~~~~~g~~~~a~~~~~~m 234 (324)
+...+...|++++|.+.++..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444333
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.96 E-value=0.00068 Score=47.36 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=8.9
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 038109 110 IGRLCKLKKIDEALRVVDIMA 130 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~ 130 (324)
...+.+.|++++|.+.|+.+.
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~ 29 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFL 29 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444444444443
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=2.2e-05 Score=51.35 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHH
Q 038109 222 GRVEEAFVLLRRMVDDGQ-SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300 (324)
Q Consensus 222 g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (324)
|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. .+.+.. +......+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555555555554322 11223333345555555555555555544 222111 122222334555555555555555
Q ss_pred HH
Q 038109 301 LK 302 (324)
Q Consensus 301 ~~ 302 (324)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00063 Score=47.54 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=7.3
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 038109 215 VLGACRAGRVEEAFVLLRR 233 (324)
Q Consensus 215 i~~~~~~g~~~~a~~~~~~ 233 (324)
..++.+.|++++|.+.|+.
T Consensus 46 ~~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHHhhccHHHHHHHHHH
Confidence 3333333333333333333
No 153
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.93 E-value=0.0018 Score=59.66 Aligned_cols=180 Identities=13% Similarity=0.042 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhcCCCCC-chhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038109 51 LETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDI 128 (324)
Q Consensus 51 ~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~ 128 (324)
...+...|-+..+. .|+ ...|..|...|....+...|.+.|....+..+ +..++....+.|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45555555444443 333 36788999999999999999999999988776 566899999999999999999999433
Q ss_pred HHhCCCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 038109 129 MAEGGFG-LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD 207 (324)
Q Consensus 129 m~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 207 (324)
.-+.... .-..-|...--.|...++...+..-|+...+..+ -|...|..+..+|..+|++..|.++|.+.....+ +
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP--~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP--L 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc--H
Confidence 3322110 0111222233346677899999999998888754 3888999999999999999999999998877532 2
Q ss_pred HHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 038109 208 ARTYDAL--VLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 208 ~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~ 236 (324)
.+|... ...-+..|.+.+|...+.....
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333332 3335678899999888877653
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00026 Score=46.79 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHh
Q 038109 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289 (324)
Q Consensus 210 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 289 (324)
.+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++....... .+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHH
Confidence 355677788889999999999999876532 3346677788889999999999999999877643 35568888889999
Q ss_pred CcCCHHHHHHHHHHHHhC
Q 038109 290 GLERFNEANFILKEMNKR 307 (324)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~ 307 (324)
..|++++|...+++..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887643
No 155
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.90 E-value=0.00069 Score=60.36 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=87.4
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHH
Q 038109 43 NAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEA 122 (324)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 122 (324)
.+....+.|.+|+.+++.+..+. .-..-|..+...|...|+++.|+++|-+.. .++-.|..|.+.|+|++|
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-------hhHHHHHHHhccccHHHH
Confidence 34455677888888888776643 233446677888899999999988876543 366778889999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 038109 123 LRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198 (324)
Q Consensus 123 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 198 (324)
.++-.+.. |.......|-.-..-+-+.|++.+|++++-... .|+. .|.+|-+.|..+++.++.++
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 88865543 333344555555555556666666666554332 2332 34556666666666655543
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.90 E-value=0.00066 Score=55.45 Aligned_cols=131 Identities=8% Similarity=0.087 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038109 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA-YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217 (324)
Q Consensus 139 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 217 (324)
.+|..+++..-+.+..+.|..+|.+..+.+. .+..+|-..... |...++.+.|.++|+...+. ...+...|..-+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566667777777777777777777764431 123333333333 22245555577777766654 23356666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 218 ACRAGRVEEAFVLLRRMVDDGQSV---LYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 218 ~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
+.+.|+.+.|..+|++.... +.+ ....|...++-=.+.|+.+.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776644 211 2236666666666667777777776666553
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.0009 Score=54.67 Aligned_cols=128 Identities=9% Similarity=0.089 Sum_probs=55.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGF-GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 183 (324)
+|-.+++..-+.+..+.|..+|.+.++.+. ..+.....+.+. +...++.+.|.++|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 344445555555555555555555543321 112222222221 11233444455555554443 333444455555555
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 184 CFKGNLTATSGVLKKMEEEKLGADA----RTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 184 ~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
.+.++.+.|..+|++.... + |.. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555433 1 122 2455555555555555555555555443
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.86 E-value=5.4e-05 Score=49.47 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=39.2
Q ss_pred cCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 186 KGNLTATSGVLKKMEEEKLG-ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 264 (324)
.|+++.|..+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666554332 1233344455666666666666666655 11111 111222233455666666666666
Q ss_pred HHHH
Q 038109 265 FVMV 268 (324)
Q Consensus 265 ~~~~ 268 (324)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 159
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.0032 Score=57.04 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=111.4
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038109 45 AGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALR 124 (324)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 124 (324)
....|-+++|..+|++-++.+ .|=..|-..|.+++|.++-+.-.+. .=..||.....-+-..++.+.|++
T Consensus 810 AieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRi-HLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRI-HLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccce-ehhhhHHHHHHHHHhhccHHHHHH
Confidence 456778888888888877642 4556677789999998876643322 223366666677777788888888
Q ss_pred HHHHHHhCCC-------------------CCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038109 125 VVDIMAEGGF-------------------GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185 (324)
Q Consensus 125 ~~~~m~~~g~-------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 185 (324)
.|++.....+ .-|...|.-..+.+-..|+.+.|+.+|...+. |-++++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 8876321110 11333344444444455666666666665433 5567777788
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
.|+.++|-++-++-. |......+.+.|-..|++.+|..+|.+..
T Consensus 951 qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 888888887765432 66677778899999999999999998764
No 160
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.84 E-value=0.0096 Score=51.45 Aligned_cols=150 Identities=8% Similarity=0.013 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHH
Q 038109 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP-DLTAYNYLLTAYCFKGNLTATSGVLK 197 (324)
Q Consensus 119 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 197 (324)
.+.....++++...-..--.-+|...|+...+...+..|..+|.+..+.+..+ ++.+++++|..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 56666777777654322234568888888888888999999999998888766 7788888888777 567888999998
Q ss_pred HHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 198 KME-EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL--YSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 198 ~m~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
-=. +.|- +..-....++-+...|+-..+..+|++....++.|+ ...|..++.-=...|+...+.++-+++..
T Consensus 426 LGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 543 3322 233345567777888888899999999888766554 47788899888888999888887766543
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0032 Score=51.64 Aligned_cols=151 Identities=19% Similarity=0.124 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhc-CChhhHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHh
Q 038109 153 RMEEAWGLMEVMKE----IRV-SPDLTAYNYLLTAYCFK-GNLTATSGVLKKMEEE----KLGAD--ARTYDALVLGACR 220 (324)
Q Consensus 153 ~~~~a~~~~~~m~~----~~~-~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~ 220 (324)
++++|...+++... .|- ..-...+..+...|... |++++|.+.|++..+. | .+. ...+..+...+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 66666665555432 221 11133555566677777 8888888888765532 2 111 3455667788889
Q ss_pred cCCHHHHHHHHHHHHHCCC-----CcCHH-HHHHHHHHHHhcCCHHHHHHHHHHhCCCC--CC--cCHhHHHHHHHHHhC
Q 038109 221 AGRVEEAFVLLRRMVDDGQ-----SVLYS-TYAHVMGALLRLGYYAQAVKFVMVCGGRD--IK--LDTELFGSLGSKLIG 290 (324)
Q Consensus 221 ~g~~~~a~~~~~~m~~~~~-----~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~ 290 (324)
.|++++|.++|++....-. +++.. .|...+-.+...|++-.|.+.++...... +. ........|+.++-.
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999988775422 22222 23333445666788999999998876542 22 224455566676654
Q ss_pred --cCCHHHHHHHHHHH
Q 038109 291 --LERFNEANFILKEM 304 (324)
Q Consensus 291 --~g~~~~a~~~~~~m 304 (324)
...++++..-|+.+
T Consensus 248 ~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSI 263 (282)
T ss_dssp T-CCCHHHHCHHHTTS
T ss_pred CCHHHHHHHHHHHccc
Confidence 24455555555444
No 162
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0072 Score=51.99 Aligned_cols=193 Identities=14% Similarity=0.066 Sum_probs=94.8
Q ss_pred hhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHH-------HHHH
Q 038109 76 ITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI-------LSVL 148 (324)
Q Consensus 76 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-------i~~~ 148 (324)
+.+..-+..+++.+.+-+........+..-++....+|...|.+.++...-+...+.|.. ...-|+.+ -.++
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhh
Confidence 334444444455555555544433322223445555566666655555555555444432 11112222 2233
Q ss_pred HccCcHHHHHHHHHHHHhCCCCCCHH-------------------------HHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 038109 149 TRGKRMEEAWGLMEVMKEIRVSPDLT-------------------------AYNYLLTAYCFKGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 149 ~~~~~~~~a~~~~~~m~~~~~~~~~~-------------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 203 (324)
.+.++.+.+...|.+.......|+.. -.-.-...+.+.|++..|...|.++.+..
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 44455555555555543332222211 11122445566667777777777766665
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 204 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
+. |...|+...-+|.+.|.+..|++=.+...+. .|+ ...|..=..++....+++.|.+.|++.++.
T Consensus 389 P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 389 PE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred Cc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 6666777777777777777666665555543 222 222222222333344566666666666554
No 163
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.80 E-value=0.013 Score=47.83 Aligned_cols=284 Identities=12% Similarity=-0.016 Sum_probs=189.0
Q ss_pred HHHHHHhhhcCCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCc-hhhHhhhhchhhhhhHHHHHHHHHH
Q 038109 18 LVTRSFTKSGAFPDE-PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFITNTENSLSVLSDLCRTLAR 95 (324)
Q Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 95 (324)
-+++.+-.-...+.. .++.-.--+=+.+...|++..|+.-|....+- .|+. .++---...|...|+-..|..-++.
T Consensus 20 vll~~~~e~a~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~r 97 (504)
T KOG0624|consen 20 VLLELFLEGAESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSR 97 (504)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHH
Confidence 333443333333333 33334445556677788888888888877653 2332 2333335567788888888888888
Q ss_pred HhcCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--hh------------hHHHHHHHHHccCcHHHHHHH
Q 038109 96 LDKGFPRKSA-YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AI------------TFHPILSVLTRGKRMEEAWGL 160 (324)
Q Consensus 96 ~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~------------~~~~li~~~~~~~~~~~a~~~ 160 (324)
..+..||-.. ---=...+.+.|.++.|..=|+.+.+....-. .. .....+..+.-.|+...|...
T Consensus 98 VlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 98 VLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred HHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 8777787542 22334567899999999999999987643211 11 122233456677999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038109 161 MEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240 (324)
Q Consensus 161 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 240 (324)
...+.+..+ -|...|..-..+|...|++..|+.=++...+..-. +..++--+-..+-..|+.+.++...++..+. .
T Consensus 178 i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--d 253 (504)
T KOG0624|consen 178 ITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--D 253 (504)
T ss_pred HHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--C
Confidence 999988643 37788888899999999999998877766665444 5566666677778889999999999888754 3
Q ss_pred cCHHH----HHH---H------HHHHHhcCCHHHHHHHHHHhCCCCCCcCH---hHHHHHHHHHhCcCCHHHHHHHHHHH
Q 038109 241 VLYST----YAH---V------MGALLRLGYYAQAVKFVMVCGGRDIKLDT---ELFGSLGSKLIGLERFNEANFILKEM 304 (324)
Q Consensus 241 p~~~~----~~~---l------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (324)
||... |-. + +......+++.++..-.+...+..+.... ..+..+-.++...|++.+|++...+.
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 44221 111 1 12344667777777777776665443222 33444556777889999999999988
Q ss_pred HhC
Q 038109 305 NKR 307 (324)
Q Consensus 305 ~~~ 307 (324)
.+.
T Consensus 334 L~~ 336 (504)
T KOG0624|consen 334 LDI 336 (504)
T ss_pred Hhc
Confidence 743
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.76 E-value=0.00079 Score=50.50 Aligned_cols=64 Identities=8% Similarity=-0.035 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA--DARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 173 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
...+..+...+...|++++|...|++.......| ...++..+...+...|+.++|++.++....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555666666666666666665443222 123566666666666666666666666554
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.74 E-value=0.0013 Score=55.73 Aligned_cols=90 Identities=12% Similarity=-0.078 Sum_probs=46.2
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 038109 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190 (324)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 190 (324)
..+...|++++|++.|++..+.... +...|..+..++.+.|++++|...+++..+... .+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 3444455555555555555553222 344455555555555555555555555554431 23444555555555555555
Q ss_pred hHHHHHHHHHHC
Q 038109 191 ATSGVLKKMEEE 202 (324)
Q Consensus 191 ~a~~~~~~m~~~ 202 (324)
+|...|++..+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=0.0047 Score=46.52 Aligned_cols=89 Identities=11% Similarity=-0.007 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038109 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181 (324)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 181 (324)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+... .+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3566777777788888888888887776433222 35667777777788888888888877776532 24555666666
Q ss_pred HHHhcCChhhHH
Q 038109 182 AYCFKGNLTATS 193 (324)
Q Consensus 182 ~~~~~~~~~~a~ 193 (324)
++...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 676666654444
No 167
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.72 E-value=0.0035 Score=48.58 Aligned_cols=173 Identities=12% Similarity=0.093 Sum_probs=72.3
Q ss_pred chhhhhhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcH
Q 038109 79 TENSLSVLSDLCRTLARLDKGFPRK----SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154 (324)
Q Consensus 79 ~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 154 (324)
.+...|++++|.+.|+.+....|+. .+.-.++.++.+.|+++.|...++++.+.-..-....+...+.+.+.....
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 3445555666666666655444421 134455566666666666666666655431111111122222222111111
Q ss_pred HHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 155 EEAWGLMEVMKEIRVSP-----DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229 (324)
Q Consensus 155 ~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 229 (324)
.... .....+ -...+..++.-|-.+.-..+|...+..+.+. =...--.+...|.+.|.+..|..
T Consensus 94 ~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 94 PGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHH
T ss_pred ccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHH
Confidence 1100 000000 0123444444455555555555544444332 01111124455666677777766
Q ss_pred HHHHHHHC--CCCcCHHHHHHHHHHHHhcCCHHHH
Q 038109 230 LLRRMVDD--GQSVLYSTYAHVMGALLRLGYYAQA 262 (324)
Q Consensus 230 ~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a 262 (324)
-++.+.+. +..........++.++.+.|..+.+
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 66666654 2222233445566666666666543
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.71 E-value=0.0097 Score=47.47 Aligned_cols=181 Identities=9% Similarity=-0.013 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhh---HhhhhchhhhhhHHHHHHHHHHHhcCCCCHH--HHHHH
Q 038109 35 SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTF---NFITNTENSLSVLSDLCRTLARLDKGFPRKS--AYDTL 109 (324)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~l 109 (324)
...+-.....+...|++++|.+.|+.+.... +-+...- -.+..++.+.++++.|...+++..+..|+.. .|...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3333344455677999999999999998752 2223322 4567888999999999999999988777433 44444
Q ss_pred HHHHHc--c---------------CC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCC
Q 038109 110 IGRLCK--L---------------KK---IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169 (324)
Q Consensus 110 i~~~~~--~---------------~~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 169 (324)
+.+.+. . .+ ..+|++.|+++++ -|-.+.-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH--
Confidence 444431 1 11 2334444544444 333333345555444444331
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE--KLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 170 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
. ...--.+.+.|.+.|.+..|..-++.+.+. +..........++.+|...|..++|.+....+.
T Consensus 174 -l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 111224667788999999999999988875 233345667788899999999999988876654
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.71 E-value=0.0013 Score=49.34 Aligned_cols=92 Identities=11% Similarity=-0.049 Sum_probs=45.5
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038109 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP--DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217 (324)
Q Consensus 140 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 217 (324)
.|..+...+...|++++|...|+........| ...++..+..++...|++++|...++........ ...++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34444444555555555555555554432111 1235555556666666666666666655544222 23344444444
Q ss_pred HH-------hcCCHHHHHHHHH
Q 038109 218 AC-------RAGRVEEAFVLLR 232 (324)
Q Consensus 218 ~~-------~~g~~~~a~~~~~ 232 (324)
+. ..|++++|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 44 5555554444443
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.70 E-value=0.0034 Score=51.47 Aligned_cols=149 Identities=14% Similarity=0.122 Sum_probs=76.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-CcHHHHHHHHHHHHh----CCCCC--CHHHHHH
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG-KRMEEAWGLMEVMKE----IRVSP--DLTAYNY 178 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~----~~~~~--~~~~~~~ 178 (324)
|...+..|...|++..|-+++.+ +...|-.. |++++|.+.|++... .| .+ -..++..
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~ 160 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLK 160 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHH
Confidence 34444455555555555444433 33445555 677777777766443 22 11 1345566
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcC--HHHHHH
Q 038109 179 LLTAYCFKGNLTATSGVLKKMEEEKLG-----ADAR-TYDALVLGACRAGRVEEAFVLLRRMVDD--GQSVL--YSTYAH 248 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~ 248 (324)
+...+.+.|++++|.++|++....-.. .+.. .|-..+-++...|+.-.|.+.+++.... ++..+ ......
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 677778888888888888877654221 1221 2233344556677888888888877643 22222 334455
Q ss_pred HHHHHHhc--CCHHHHHHHHHHhC
Q 038109 249 VMGALLRL--GYYAQAVKFVMVCG 270 (324)
Q Consensus 249 li~~~~~~--g~~~~a~~~~~~~~ 270 (324)
|+.+|-.. ..++.+..-|+.+.
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHhCCHHHHHHHHHHHcccC
Confidence 56665432 23444544444443
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.0041 Score=46.85 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 038109 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD--LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215 (324)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 215 (324)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34566666677778888888888888776543222 356777777888888888888888877765433 455666666
Q ss_pred HHHHhcCCHHHHH
Q 038109 216 LGACRAGRVEEAF 228 (324)
Q Consensus 216 ~~~~~~g~~~~a~ 228 (324)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6676666644433
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.68 E-value=0.0021 Score=46.57 Aligned_cols=91 Identities=8% Similarity=-0.069 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcC
Q 038109 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292 (324)
Q Consensus 213 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 292 (324)
.+..-+...|++++|.++|+.+..-.. -+..-|-.|-.++-..|++++|...+.......+ -|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 344445566666666666666554321 2223333444555566666666666666655543 25555666666666666
Q ss_pred CHHHHHHHHHHHH
Q 038109 293 RFNEANFILKEMN 305 (324)
Q Consensus 293 ~~~~a~~~~~~m~ 305 (324)
+.+.|.+.|+...
T Consensus 118 ~~~~A~~aF~~Ai 130 (157)
T PRK15363 118 NVCYAIKALKAVV 130 (157)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666544
No 173
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.68 E-value=0.0035 Score=45.48 Aligned_cols=89 Identities=12% Similarity=-0.013 Sum_probs=53.4
Q ss_pred HHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 038109 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225 (324)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 225 (324)
..+...|++++|.++|+.+...... +..-|-.|..++-..|++++|...|.......+. |...+-.+..++...|+.+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHH
Confidence 3344556666666666666554322 4445555666666666666666666666665543 5566666666666666666
Q ss_pred HHHHHHHHHHH
Q 038109 226 EAFVLLRRMVD 236 (324)
Q Consensus 226 ~a~~~~~~m~~ 236 (324)
.|.+.|+....
T Consensus 121 ~A~~aF~~Ai~ 131 (157)
T PRK15363 121 YAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 174
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.68 E-value=0.0011 Score=48.50 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH-----hCCCchhHHHHHHH
Q 038109 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN-----KRDLKMGFKLRDYY 319 (324)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~~~~ 319 (324)
+...++..+...|+++.|..+.+.+.... +.+...|..++.+|...|+..+|.++|+++. +.|+.|+..+..+|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 45567778889999999999999998875 4488899999999999999999999999874 46999999999988
Q ss_pred hhh
Q 038109 320 EIN 322 (324)
Q Consensus 320 ~~~ 322 (324)
..+
T Consensus 143 ~~i 145 (146)
T PF03704_consen 143 REI 145 (146)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 175
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.63 E-value=0.012 Score=54.52 Aligned_cols=180 Identities=14% Similarity=-0.011 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 038109 86 LSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164 (324)
Q Consensus 86 ~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 164 (324)
...+...|-+..+..|+ .+.|..|...|....+...|.+.|++..+-... +..........|+...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 45555555555554454 348999999999999999999999999875433 6677888899999999999999984333
Q ss_pred HhCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 038109 165 KEIRV-SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243 (324)
Q Consensus 165 ~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 243 (324)
-+... ..-..-|.-..-.|.+.++..+|..-|+...+..+. |...|..+..+|.++|++..|.++|.+.... .|+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 22210 001112223444577888999999999998888776 8999999999999999999999999887643 4542
Q ss_pred HHHHHHHHH--HHhcCCHHHHHHHHHHhC
Q 038109 244 STYAHVMGA--LLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 244 ~~~~~li~~--~~~~g~~~~a~~~~~~~~ 270 (324)
+|.....+ -+..|.+.+|...+....
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34333332 456788888888775553
No 176
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.0031 Score=53.52 Aligned_cols=91 Identities=11% Similarity=-0.062 Sum_probs=78.5
Q ss_pred hhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHH
Q 038109 77 TNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155 (324)
Q Consensus 77 ~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 155 (324)
...+...|++++|...|+++.+..| +...|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 4556778999999999999988777 456888899999999999999999999988643 36778888889999999999
Q ss_pred HHHHHHHHHHhCC
Q 038109 156 EAWGLMEVMKEIR 168 (324)
Q Consensus 156 ~a~~~~~~m~~~~ 168 (324)
+|...|++..+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998864
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.58 E-value=0.0042 Score=43.30 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=50.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---H-HHHHHHHHHH
Q 038109 180 LTAYCFKGNLTATSGVLKKMEEEKLGAD--ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL---Y-STYAHVMGAL 253 (324)
Q Consensus 180 i~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~-~~~~~li~~~ 253 (324)
-.++-..|+.++|..+|++....|.... ...+-.+.+++...|++++|..+++...... |+ . .....+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3455566777777777777776665533 2344555666667777777777777665431 22 1 1111122345
Q ss_pred HhcCCHHHHHHHHHHh
Q 038109 254 LRLGYYAQAVKFVMVC 269 (324)
Q Consensus 254 ~~~g~~~~a~~~~~~~ 269 (324)
...|+.++|..++-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5667777776665443
No 178
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0069 Score=47.51 Aligned_cols=60 Identities=8% Similarity=-0.004 Sum_probs=29.5
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 038109 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201 (324)
Q Consensus 142 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 201 (324)
+.++....-.|.+.-....+.+..+...+.++.....+.+.-.+.|+.+.|...|++..+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334444444444444445555555444344445555555555555555555555554443
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00054 Score=42.54 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=21.5
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
.|++++|.+.|+.+....+. +...+..+..+|.+.|++++|.++++.+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444443332 34444444444444444444444444444
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.045 Score=45.49 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 254 (324)
+.+..|.-+...|+...|.++-.+.. .||..-|-..+.+++..++|++-.++... . -++.-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHH
Confidence 44555667778888888877765542 36999999999999999999988876542 2 12366888999999
Q ss_pred hcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHH
Q 038109 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302 (324)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (324)
+.|+..+|..++.. + .+..-+..|.++|++.+|.+.--
T Consensus 249 ~~~~~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998876 1 22456788888999999876643
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.02 Score=51.00 Aligned_cols=139 Identities=12% Similarity=-0.015 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHHhcC-----ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 038109 169 VSPDLTAYNYLLTAYCFKG-----NLTATSGVLKKMEEEKLGADARTYDALVLGACRAG--------RVEEAFVLLRRMV 235 (324)
Q Consensus 169 ~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~ 235 (324)
.+.+...|...+++..... +...|..+|++..+..+. ....|..+..++.... +...+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4567788888888755432 366888999988887544 4555655544443321 1233334443332
Q ss_pred HC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCc
Q 038109 236 DD-GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310 (324)
Q Consensus 236 ~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 310 (324)
.. ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....+-.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 22 233345667766666667899999999999988865 57788888899999999999999999887654433
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.42 E-value=0.032 Score=49.72 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=97.0
Q ss_pred CCCCCChhhHHHHHHHHHcc-----CcHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------ChhhHHHHHH
Q 038109 132 GGFGLSAITFHPILSVLTRG-----KRMEEAWGLMEVMKEIRVSPD-LTAYNYLLTAYCFKG--------NLTATSGVLK 197 (324)
Q Consensus 132 ~g~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~--------~~~~a~~~~~ 197 (324)
.+.+.+...|...+++.... ++...|..+|++..+.. |+ ...|..+..++.... +...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 34556778888888875543 23778889999988864 44 344444444333321 1223333333
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc
Q 038109 198 KMEEE-KLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276 (324)
Q Consensus 198 ~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (324)
..... ....+...|.++.......|++++|...+++..... |+...|..+...+...|+.++|...+.+..... |
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--P 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Confidence 33232 123355778877777777899999999999988764 788889999999999999999999998887754 4
Q ss_pred CHhHH
Q 038109 277 DTELF 281 (324)
Q Consensus 277 ~~~~~ 281 (324)
...+|
T Consensus 485 ~~pt~ 489 (517)
T PRK10153 485 GENTL 489 (517)
T ss_pred CCchH
Confidence 43343
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.41 E-value=0.00035 Score=43.39 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038109 83 LSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAE 131 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 131 (324)
.|++++|.+.|+.+....| +..++..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555444444 333444455555555555555555555444
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.0056 Score=42.69 Aligned_cols=90 Identities=16% Similarity=0.026 Sum_probs=55.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCc--hhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC---HH-HHHHHHHHHHc
Q 038109 42 VNAAGHERDLETVRYLLNKRARDCCFNTA--NTFNFITNTENSLSVLSDLCRTLARLDKGFPR---KS-AYDTLIGRLCK 115 (324)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~-~~~~li~~~~~ 115 (324)
..++-..|+.++|..+|+.....|..... ..+-.+...+...|++++|..+++.....+|+ .. ....+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455677778888888877776654432 34445566677777777777777777665554 22 22223345566
Q ss_pred cCCHHHHHHHHHHHHh
Q 038109 116 LKKIDEALRVVDIMAE 131 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~ 131 (324)
.|+.++|++.+-....
T Consensus 88 ~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA 103 (120)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6777777776655443
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.38 E-value=0.0013 Score=40.44 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=28.4
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
..+.+.|++++|...|+...+..+. +...+..+..++.+.|++++|...|++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555432 44555555555555555555555555554
No 186
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.36 E-value=0.0019 Score=47.12 Aligned_cols=71 Identities=21% Similarity=0.161 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD-----DGQSVLYSTY 246 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 246 (324)
+...++..+...|++++|..+.+.+....+- |...|..+|.+|...|+..+|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4556777778888888888888888877554 788888888888888888888888887653 3888887663
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.33 E-value=0.028 Score=41.86 Aligned_cols=131 Identities=12% Similarity=0.054 Sum_probs=95.6
Q ss_pred CCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CChhhHH
Q 038109 66 CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF--PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG-LSAITFH 142 (324)
Q Consensus 66 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~ 142 (324)
+-|+...-..|.++....|+..+|...|.+...+. .|....-.+.++....++...|...++++.+.... -++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 46777777788899999999999999999887765 46667778888888899999999999998875411 1233455
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 038109 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKK 198 (324)
Q Consensus 143 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 198 (324)
.+...+...|...+|+..|+.....-..|....| .-..+.+.|+.+++..-+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHH
Confidence 6678888899999999999998876433333333 44555677776665544333
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0036 Score=49.96 Aligned_cols=102 Identities=13% Similarity=0.024 Sum_probs=64.7
Q ss_pred chhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHH
Q 038109 79 TENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157 (324)
Q Consensus 79 ~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 157 (324)
-..+.+++.+|+..|.+.....| |.+-|..=..+|++.|.++.|++-.+........ -..+|..|-.+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 34666777777777777766666 3445555667777777777777766666553211 245677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038109 158 WGLMEVMKEIRVSPDLTAYNYLLTAY 183 (324)
Q Consensus 158 ~~~~~~m~~~~~~~~~~~~~~li~~~ 183 (324)
.+.|+.... +.|+-.+|-.=+...
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 777776655 456555555444443
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.29 E-value=0.0019 Score=40.18 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG-RVEEAFVLLRRMV 235 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 235 (324)
.+|..+...+...|++++|...|++..+.... +...|..+..+|.+.| ++++|++.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444555555555555555555555544332 3444555555555555 4555555554443
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.28 E-value=0.0022 Score=39.38 Aligned_cols=54 Identities=19% Similarity=0.084 Sum_probs=30.8
Q ss_pred hchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038109 78 NTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAE 131 (324)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 131 (324)
..+...|++++|.+.|+.+.+..|+ ...+..+...+...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556666666666666555553 33555566666666666666666666554
No 191
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0079 Score=48.07 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=49.8
Q ss_pred HccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038109 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228 (324)
Q Consensus 149 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 228 (324)
.+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|.+--+.....+.. ...+|..|-.+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 34455555555555555542 124455555555556666555555555444443222 3445555555566666666665
Q ss_pred HHHHHHHHCCCCcCHHHHHH
Q 038109 229 VLLRRMVDDGQSVLYSTYAH 248 (324)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~ 248 (324)
+.|++.++ +.|+..+|-.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHhhhc--cCCCcHHHHH
Confidence 55555442 3455444433
No 192
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.24 E-value=0.006 Score=42.97 Aligned_cols=52 Identities=13% Similarity=-0.004 Sum_probs=37.8
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC-CCCCcCHhHHHHHHHHHh
Q 038109 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG-RDIKLDTELFGSLGSKLI 289 (324)
Q Consensus 238 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 289 (324)
...|+..+..+++.+|+..|++..|.++++...+ .+++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4557788888888888888888888888766644 456667777877776443
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.19 E-value=0.0065 Score=48.91 Aligned_cols=92 Identities=10% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCc----hhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC----HHHHHHH
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRARDCCFNTA----NTFNFITNTENSLSVLSDLCRTLARLDKGFPR----KSAYDTL 109 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~l 109 (324)
|...+....+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+.+.+|+ ..++-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444434445555555555555543 1221 24444555555555555555555555444432 1233333
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 038109 110 IGRLCKLKKIDEALRVVDIMAE 131 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~ 131 (324)
...+...|+.++|.++|+++.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444445555555555555444
No 194
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.17 E-value=0.0091 Score=42.07 Aligned_cols=49 Identities=6% Similarity=0.143 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 038109 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE-EKLGADARTYDALVLG 217 (324)
Q Consensus 169 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~ 217 (324)
..|+..+..+++.+|+..|++..|+++.+...+ .+++.+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345555555555555555555555555555443 2444455555555543
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.023 Score=44.73 Aligned_cols=137 Identities=11% Similarity=0.001 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH---
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM--- 250 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li--- 250 (324)
.+-+.++.++.-.|.+.-....+.+..+...+-+....+.|.+.-.+.|+.+.|...|++..+...+.|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34567778888888999999999999998777789999999999999999999999999887664455555555444
Q ss_pred --HHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCch
Q 038109 251 --GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311 (324)
Q Consensus 251 --~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 311 (324)
..|..++++..|...+.+....+.. |+..-|.-.-++.-.|+..+|.+.++.|.+....|
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3455667888888888888776533 55555554445555799999999999998765554
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.09 E-value=0.0026 Score=39.54 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=26.6
Q ss_pred hhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccC-CHHHHHHHHHHHH
Q 038109 72 TFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLK-KIDEALRVVDIMA 130 (324)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~-~~~~a~~~~~~m~ 130 (324)
+|..+...+...|++++|...|++..+..|+ ...|..+..++...| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444444444444444443342 224444444444444 3444444444443
No 197
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.08 E-value=0.013 Score=46.47 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=58.1
Q ss_pred ChhhHHHHHHHHH-----ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHH
Q 038109 137 SAITFHPILSVLT-----RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTY 211 (324)
Q Consensus 137 ~~~~~~~li~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 211 (324)
|..+|-..+..+. +.+..+-....++.|.+.|+..|..+|+.|+..+-+..-. | ...+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P-~nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------P-QNVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------c-HHHH
Confidence 4455555555443 2244555555566666666666666666666654432211 0 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038109 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259 (324)
Q Consensus 212 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 259 (324)
....-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11111111 12345777888888888888888888888888877754
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.05 E-value=0.063 Score=41.64 Aligned_cols=179 Identities=15% Similarity=0.097 Sum_probs=100.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCC---chhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH--HHHHHHHHHH
Q 038109 40 DLVNAAGHERDLETVRYLLNKRARDCCFNT---ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS--AYDTLIGRLC 114 (324)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~li~~~~ 114 (324)
.....+...|++.+|.+.|+.+... .+.+ ....-.++.++-+.|+++.|...++.+.+.+|+.. .+...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~-~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDR-YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 3344567889999999999999875 2222 23455678889999999999999999988777543 3333333333
Q ss_pred ccCCHHHHHHHHHHHHhCCCC---CChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh
Q 038109 115 KLKKIDEALRVVDIMAEGGFG---LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 191 (324)
......... ....... --...+..++.-|=.+.-..+|...+..+.+. =...--.+...|.+.|.+..
T Consensus 89 ~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 89 YYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHH
T ss_pred HHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHH
Confidence 221111110 0000000 00123444455555555556665555554432 01112235677889999999
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 038109 192 TSGVLKKMEEEKLG--ADARTYDALVLGACRAGRVEEAF 228 (324)
Q Consensus 192 a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~ 228 (324)
|..-++.+.+.=+. ......-.++.+|.+.|..+.+.
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999888875222 11345566778888888877443
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.99 E-value=0.004 Score=39.19 Aligned_cols=54 Identities=24% Similarity=0.196 Sum_probs=30.1
Q ss_pred HHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.|.+.++++.|.++++.+...++. ++..+......+.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455555666666666555555322 455555555555566666666666665553
No 200
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.98 E-value=0.01 Score=47.07 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC------------
Q 038109 90 CRTLARLDKGFPRKSAYDTLIGRLCKL-----KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK------------ 152 (324)
Q Consensus 90 ~~~~~~~~~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~------------ 152 (324)
++.|..+..+..|..+|-..+..+... +.++-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 444555544445666777777666543 566777777888999999999999999998765442
Q ss_pred ----cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 038109 153 ----RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189 (324)
Q Consensus 153 ----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 189 (324)
+-+=+.+++++|...|+.||..+-..++.++++.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3455778999999999999999999999999887753
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.97 E-value=0.03 Score=45.19 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHH
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD--ARTYDALVLGACRAGRVEEAFVLLRRMVDD--GQSVLYSTYAHV 249 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l 249 (324)
..|...+....+.|++++|...|+.+.+.-+... ...+-.+...|...|++++|...|+.+.+. +-......+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444555666666666666665533211 235555666666666666666666666543 111112333334
Q ss_pred HHHHHhcCCHHHHHHHHHHhCCC
Q 038109 250 MGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
...+...|+.+.|...++.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666666666666665543
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.92 E-value=0.0099 Score=37.34 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 182 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
.|.+.+++++|.++++.+...++. +...|......+.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455555666666666655555443 455555555555566666666666655554
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=96.89 E-value=0.05 Score=39.86 Aligned_cols=85 Identities=11% Similarity=-0.050 Sum_probs=38.0
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 264 (324)
..|++++|..+|+-+.-.++- +..=|..|..++-..+++++|...|......+. -|+..+-..-.++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 455555555555554443332 333344444444445555555555544332211 111222234444555555555555
Q ss_pred HHHHhCC
Q 038109 265 FVMVCGG 271 (324)
Q Consensus 265 ~~~~~~~ 271 (324)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5544443
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.079 Score=42.65 Aligned_cols=99 Identities=15% Similarity=0.055 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHH
Q 038109 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG---RVEEAFVLLRRMVDDGQSVLYSTYAH 248 (324)
Q Consensus 172 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ 248 (324)
|...|-.|..+|...|+++.|..-|....+.-.+ +...+..+..++.... ...++..+|+++.... .-+..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 5556666666666666666666666655554222 4444444444433322 2345556666655432 122333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 249 VMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444556666666666666666554
No 205
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.83 E-value=0.016 Score=48.53 Aligned_cols=261 Identities=15% Similarity=0.035 Sum_probs=151.9
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCC----chhhHhhhhchhhhhhHHHHHHHHHH-------HhcCCCCHHHHHHHHHH
Q 038109 44 AAGHERDLETVRYLLNKRARDCCFNT----ANTFNFITNTENSLSVLSDLCRTLAR-------LDKGFPRKSAYDTLIGR 112 (324)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~p~~~~~~~li~~ 112 (324)
-+|+.|+......+|+..++-|- .| ..+|..|.++|.-.++++.|.++... +....-...+-..|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 46899999999999999988763 33 34677888999999999999887432 11111111122333334
Q ss_pred HHccCCHHHHHHHHHH----HHhCCCC-CChhhHHHHHHHHHccCc--------------------HHHHHHHHHH----
Q 038109 113 LCKLKKIDEALRVVDI----MAEGGFG-LSAITFHPILSVLTRGKR--------------------MEEAWGLMEV---- 163 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~----m~~~g~~-~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~---- 163 (324)
+--.|.+++|+-.-.+ .++-|-. .....+-.+.+.|...|+ ++.|.++|.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555433211 1222211 122344445555544432 2334444433
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038109 164 MKEIRV-SPDLTAYNYLLTAYCFKGNLTATSGVLKKME----EEKLG-ADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 164 m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 237 (324)
+.+.|- -.....|..|...|.-.|++++|....+.-. +.|-. .....+..+.+++.-.|+++.|.+.|+.-...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 112221 1122445566666666788898887654321 22221 13456788889999999999999988865432
Q ss_pred ----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC-----CCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 238 ----GQS-VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR-----DIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 238 ----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
|-+ ....+.-+|-..|.-..++..|+.++..-... ...-....+.+|..+|...|..++|+.+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 211 22233444667777777888888876432210 112256778889999999999999988776544
No 206
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.81 E-value=0.096 Score=46.29 Aligned_cols=158 Identities=16% Similarity=0.053 Sum_probs=78.4
Q ss_pred hhhhchhhhhhHHHHHHHHHHHhcCC--CCH------HHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 038109 75 FITNTENSLSVLSDLCRTLARLDKGF--PRK------SAYDTLIGRLCK----LKKIDEALRVVDIMAEGGFGLSAITFH 142 (324)
Q Consensus 75 ~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~------~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~ 142 (324)
.++....=.|+-+.+.+.+....+.. ... ..|+.++..++. ..+.+.|.++++.+.+. . |+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-y-P~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-Y-PNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-C-CCcHHHH
Confidence 44555555566666666665553321 111 134444444433 34556666666666653 2 3433332
Q ss_pred HH-HHHHHccCcHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 038109 143 PI-LSVLTRGKRMEEAWGLMEVMKEIR---VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG- 217 (324)
Q Consensus 143 ~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~- 217 (324)
.. -+.+...|++++|.+.|+...... .+.....+--+.-++.-..+|++|.+.|..+.+..-- +...|.-+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHH
Confidence 22 233445566777776666543211 1112233444555566667777777777776654221 33334333322
Q ss_pred HHhcCCH-------HHHHHHHHHHH
Q 038109 218 ACRAGRV-------EEAFVLLRRMV 235 (324)
Q Consensus 218 ~~~~g~~-------~~a~~~~~~m~ 235 (324)
+...|+. ++|.++|++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 3344555 66666666554
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.07 Score=42.97 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=83.2
Q ss_pred CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CcHHHHHHHHHHHHhCCCCCCHH
Q 038109 99 GFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG---KRMEEAWGLMEVMKEIRVSPDLT 174 (324)
Q Consensus 99 ~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~ 174 (324)
..| |...|-.|...|...|+.+.|..-|.+..+- -+++...+..+..++... ..-.++..+|+++.+... -|+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~ir 228 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIR 228 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHH
Confidence 345 6779999999999999999999999988874 223555556555554433 345788899999988753 3667
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 215 (324)
+...+...+...|++.+|...|+.|.+... ....+..+|
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp--~~~~rr~~i 267 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLP--ADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCC--CCCchHHHH
Confidence 777778889999999999999999998743 333344444
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.16 Score=45.83 Aligned_cols=201 Identities=13% Similarity=0.063 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCCCchhhHhh-------hhchhhhhhHHHHHHHHHHHhcCCCCH
Q 038109 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARD-CCFNTANTFNFI-------TNTENSLSVLSDLCRTLARLDKGFPRK 103 (324)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~p~~ 103 (324)
.|-+..|..+.......-.++.|...|-+...- |++.--. ...+ ...-.-.|++++|++++-.+.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek~yld~drr---- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR---- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh----
Confidence 366667777777776666777777766554331 2211000 0000 11112235666666666555432
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC----ChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038109 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL----SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179 (324)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 179 (324)
...|..+.+.|+|-.+.++++. .|-.. -...|+.+...++....+++|.+.+..-.. -...
T Consensus 764 ---DLAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 764 ---DLAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred ---hhhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2345555666666555554422 11111 124556666666666666666655543221 1123
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038109 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259 (324)
Q Consensus 180 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 259 (324)
+.++.+..++++-..+.+.+.+ +....-.+...+.+.|.-++|.+.|-+. +. |.. .+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-pka-----Av~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-PKA-----AVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-cHH-----HHHHHHHHHHH
Confidence 4444444444444433333322 3344455556666666666666555322 11 211 33445555555
Q ss_pred HHHHHHH
Q 038109 260 AQAVKFV 266 (324)
Q Consensus 260 ~~a~~~~ 266 (324)
.+|.++-
T Consensus 895 ~~avela 901 (1189)
T KOG2041|consen 895 GEAVELA 901 (1189)
T ss_pred HHHHHHH
Confidence 5555544
No 209
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.72 E-value=0.061 Score=46.87 Aligned_cols=131 Identities=17% Similarity=0.152 Sum_probs=66.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
-.+.+++-+-+.|..+.|+++.+.-. .-.....+.|+++.|.++.++. ++...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35556666666666666665532211 1234444556666665544322 24556666666666
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 264 (324)
+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+.....|- ++..+.++.-.|++++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666666655432 44455555566666655555555544432 3334444455566666555
Q ss_pred HHHH
Q 038109 265 FVMV 268 (324)
Q Consensus 265 ~~~~ 268 (324)
++..
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 210
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.70 E-value=0.12 Score=36.28 Aligned_cols=139 Identities=15% Similarity=0.195 Sum_probs=76.0
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038109 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230 (324)
Q Consensus 151 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 230 (324)
.|..++..++..+.... .+..-||.+|--....-+-+...++++..-+- .|.. ..|+.......
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi~C 78 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVIEC 78 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHHHH
Confidence 45666666666665553 24444555554444444444444444443321 1211 22233332222
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCc
Q 038109 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLK 310 (324)
Q Consensus 231 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 310 (324)
+-.+ | .+...+...+.++..+|+-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++-+++++.-++|++
T Consensus 79 ~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 79 YAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2211 1 234456777888889999999999998887643 567888888999999999999999999999888876
Q ss_pred h
Q 038109 311 M 311 (324)
Q Consensus 311 ~ 311 (324)
-
T Consensus 153 E 153 (161)
T PF09205_consen 153 E 153 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.68 E-value=0.17 Score=37.90 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCC---CCCCHHHHH
Q 038109 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR---VSPDLTAYN 177 (324)
Q Consensus 101 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~ 177 (324)
|+...--.|..+....|+..+|...|++....-+.-|....-.+.++....+++..|...++.+.+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 55555556777777888888888888777665445566666677777777788888888877776653 2333 334
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 233 (324)
.+.+.+...|.+.+|..-|+.....-..|....|. ...+.+.|+.+++..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHHHHHH
Confidence 45667777788888887777777653333333333 2334566665555444333
No 212
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.67 E-value=0.2 Score=41.27 Aligned_cols=127 Identities=12% Similarity=0.139 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHhhhhchhh------hhhHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHccCC-
Q 038109 51 LETVRYLLNKRARDCCFNTANTFNFITNTENS------LSVLSDLCRTLARLDKGFP-----RKSAYDTLIGRLCKLKK- 118 (324)
Q Consensus 51 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~p-----~~~~~~~li~~~~~~~~- 118 (324)
+++..++++.|.+.|+.-+..+|-+..-.... ......+..+++.|++..| +..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56677888889998888887666443322222 1334556666666655443 23344444433 2222
Q ss_pred ---HHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHccCc--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038109 119 ---IDEALRVVDIMAEGGFGLSA--ITFHPILSVLTRGKR--MEEAWGLMEVMKEIRVSPDLTAYNYL 179 (324)
Q Consensus 119 ---~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l 179 (324)
.+.++.+|+.+.+.|+..+- ...+.++..+....+ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 24445555555555554321 222222222221111 22445555555555555555444433
No 213
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.64 E-value=0.24 Score=40.79 Aligned_cols=128 Identities=17% Similarity=0.293 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc--c----CcHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCh
Q 038109 119 IDEALRVVDIMAEGGFGLSAITFHPILSVLTR--G----KRMEEAWGLMEVMKEIRV---SPDLTAYNYLLTAYCFKGNL 189 (324)
Q Consensus 119 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~ 189 (324)
+++.+.+++.|.+.|+.-+..+|-+....... . .....|..+++.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667777888888887776666553333322 1 235677788888887752 3445555555544 33333
Q ss_pred ----hhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHH
Q 038109 190 ----TATSGVLKKMEEEKLGADAR-TYDALVLGACRAGR---VEEAFVLLRRMVDDGQSVLYSTYAH 248 (324)
Q Consensus 190 ----~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ 248 (324)
+.+...|+.+.+.|...+.. -+.+-+-++..... ...+.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 45667777777777665432 33333333333222 3467777888888888777666553
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.64 E-value=0.35 Score=40.94 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 241 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
.+..-+..++.++.-.|+.++|.+..+.|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34444555667777777777777777777654
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.63 E-value=0.33 Score=40.72 Aligned_cols=249 Identities=16% Similarity=0.068 Sum_probs=160.2
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCCch--hhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCHHHH
Q 038109 46 GHERDLETVRYLLNKRARDCCFNTAN--TFNFITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEA 122 (324)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a 122 (324)
.-.|+++.|.+-|+.|... |... -...|.---.+.|..+.|...-+...+.-|... .+...+...+..|+|+.|
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHH
Confidence 3579999999999999863 3322 223333334667888888888888776667544 788899999999999999
Q ss_pred HHHHHHHHhCC-CCCChh--hHHHHHHHHH---ccCcHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhhHHHH
Q 038109 123 LRVVDIMAEGG-FGLSAI--TFHPILSVLT---RGKRMEEAWGLMEVMKEIRVSPDLTA-YNYLLTAYCFKGNLTATSGV 195 (324)
Q Consensus 123 ~~~~~~m~~~g-~~~~~~--~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~ 195 (324)
+++++.-++.. +.++.. .-..|+.+-. -..+...|...-.+..+ +.||..- -..-..++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 99998877643 333432 2223333211 12345555555554444 3344221 22345778899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC
Q 038109 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD-GQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 196 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (324)
++.+-+..+.|+.. . +..+.+.|+. +..-+++..+. .++|| ...-..+..+....|++..|..--+....
T Consensus 286 lE~aWK~ePHP~ia--~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 286 LETAWKAEPHPDIA--L--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred HHHHHhcCCChHHH--H--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 99999886666532 2 2334556653 33333333221 33444 45556677888888999888776655554
Q ss_pred CCcCHhHHHHHHHHHh-CcCCHHHHHHHHHHHHhC
Q 038109 274 IKLDTELFGSLGSKLI-GLERFNEANFILKEMNKR 307 (324)
Q Consensus 274 ~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~ 307 (324)
..|....|..|.+.-. ..|+-.++...+-+-...
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3677888877777554 459999998888776544
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.61 E-value=0.12 Score=37.85 Aligned_cols=87 Identities=9% Similarity=-0.068 Sum_probs=60.7
Q ss_pred HHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038109 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227 (324)
Q Consensus 148 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 227 (324)
+...|++++|..+|.-+...+.. +..-+..|..+|-..+++++|...|...-..+.. |...+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 34668888888888877765543 4556667777777788888888888765554433 444455566777788888888
Q ss_pred HHHHHHHHH
Q 038109 228 FVLLRRMVD 236 (324)
Q Consensus 228 ~~~~~~m~~ 236 (324)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888877765
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.60 E-value=0.34 Score=40.39 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=86.9
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038109 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217 (324)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 217 (324)
..+.+..|.-+...|+...|.++-.+.+ .|+...|-..+.+++..++|++-.++-.. + -.+..|-.++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHH
Confidence 3456666778888899988888876663 37999999999999999999988775432 1 245789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038109 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268 (324)
Q Consensus 218 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (324)
|.+.|+..+|..+..++ |+ ..-+..|.+.|++.+|.+.-.+
T Consensus 247 ~~~~~~~~eA~~yI~k~------~~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI------PD----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHCCCHHHHHHHHHhC------Ch----HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999988762 22 3357888999999998776433
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.60 E-value=0.37 Score=40.79 Aligned_cols=165 Identities=13% Similarity=-0.020 Sum_probs=88.5
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 038109 142 HPILSVLTRGKRMEEAWGLMEVMKEIR---VSPDLTAYNYLLTAYCF---KGNLTATSGVLKKMEEEKLGADARTYDALV 215 (324)
Q Consensus 142 ~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 215 (324)
..++-+|....+++...++.+.+...- +.-+...-....-++.+ .|+.++|.+++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445666677777777777766541 11112222233334445 677777777777655554555666666666
Q ss_pred HHHHh---------cCCHHHHHHHHHHHHHCCCCcCHHH---HHHHHHHHHhcC-CHHHHHHHH----HHhCCCC---CC
Q 038109 216 LGACR---------AGRVEEAFVLLRRMVDDGQSVLYST---YAHVMGALLRLG-YYAQAVKFV----MVCGGRD---IK 275 (324)
Q Consensus 216 ~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g-~~~~a~~~~----~~~~~~~---~~ 275 (324)
..|-. ....++|.+.|++--+. .||..+ +..|+....... .-.+..++- ....+.| -.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 55532 12356677777654432 243222 122222211111 111222222 1122222 23
Q ss_pred cCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 276 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
.+-..+.+++.+..-.|+.++|.+..++|....
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 456667778888899999999999999998775
No 219
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.54 E-value=0.24 Score=42.30 Aligned_cols=145 Identities=12% Similarity=0.141 Sum_probs=107.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGG-FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA-YNYLLTA 182 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~ 182 (324)
+|...++.-.+..-++.|..+|-+..+.| +.+++..++++|..++. |+...|.++|+.-... + ||... -+-.+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f-~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-F-PDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-C-CCchHHHHHHHHH
Confidence 67788888888889999999999999988 66888999999987764 7778899999875443 2 34433 3566777
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038109 183 YCFKGNLTATSGVLKKMEEEKLGAD--ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255 (324)
Q Consensus 183 ~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 255 (324)
+..-++-+.|..+|+....+ +..+ ...|..+|..=..-|+...+..+=++|... .|...+.....+.|.-
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 78889999999999854433 1112 467888888888889988888887777643 4665555555555553
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.51 E-value=0.0073 Score=38.56 Aligned_cols=60 Identities=27% Similarity=0.237 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEE----KLG-AD-ARTYDALVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 234 (324)
+|+.+...|...|++++|+..|++..+. |.. |+ ..+++.+..+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555544321 111 11 334455555555555555555555543
No 221
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.49 E-value=0.3 Score=38.57 Aligned_cols=175 Identities=18% Similarity=0.116 Sum_probs=83.2
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcc---
Q 038109 80 ENSLSVLSDLCRTLARLDKGFPR----KSAYDTLIGRLCKLKKIDEALRVVDIMAEGG-FGLSAITFHPILSVLTRG--- 151 (324)
Q Consensus 80 ~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~--- 151 (324)
-.+.|++++|.+.|+.+.+..|. ..+--.++-++-+.+++++|+..+++....- -.|| .-|-.-|.+.+..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccC
Confidence 35667777777777777766652 2245556667777777777777777766532 2233 2233334433311
Q ss_pred ----CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038109 152 ----KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA 227 (324)
Q Consensus 152 ----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 227 (324)
.|...+...+..+.. ++.-|-.+.=..+|..-...+... =...=..+.+.|.+.|.+..|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred CccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHHH
Confidence 222333333322221 111111111111222111111110 000001234556667777777
Q ss_pred HHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 228 FVLLRRMVDD--GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 228 ~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
..-+++|.+. ...-....+-.+..+|...|-.++|.+.-.-+..
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 7767766654 1111223344555667777777766665554443
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.45 E-value=0.09 Score=46.82 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=110.9
Q ss_pred HHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHH
Q 038109 17 VLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL 96 (324)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 96 (324)
+.++..++++.++|..|+.. .+...|+-.|++.+|.++|.+ .|... -.+..|.....++.|.+++..-
T Consensus 617 L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~---~G~en------RAlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKR---SGHEN------RALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHH---cCchh------hHHHHHHHHHHHHHHHHHhhcC
Confidence 45566677777777778753 344556677788888777653 33221 2344555555566655554321
Q ss_pred hcCC-----CCHHHH-------HHHHHHHHccCCHHHHHHHHH------HHHhCCCCC---ChhhHHHHHHHHHccCcHH
Q 038109 97 DKGF-----PRKSAY-------DTLIGRLCKLKKIDEALRVVD------IMAEGGFGL---SAITFHPILSVLTRGKRME 155 (324)
Q Consensus 97 ~~~~-----p~~~~~-------~~li~~~~~~~~~~~a~~~~~------~m~~~g~~~---~~~~~~~li~~~~~~~~~~ 155 (324)
.... .....| .+....+..+|+.++|..+.- .+.+-+-+. +..+...+...+.+...+.
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 1000 000111 234556666777777766531 122222111 2334444444455556666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCH
Q 038109 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR-----------TYDALVLGACRAGRV 224 (324)
Q Consensus 156 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----------~~~~li~~~~~~g~~ 224 (324)
.|-++|..|-. ...+++.+...++|++|..+-+...+. .||+. -|.-.-.+|.+.|+-
T Consensus 765 LAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 765 LAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred hHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 77777776643 234677778888888888887766543 23321 233344567777888
Q ss_pred HHHHHHHHHHHHC
Q 038109 225 EEAFVLLRRMVDD 237 (324)
Q Consensus 225 ~~a~~~~~~m~~~ 237 (324)
.+|.++++++...
T Consensus 834 ~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 834 REAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHHHhhhh
Confidence 8888888777654
No 223
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.47 Score=40.16 Aligned_cols=154 Identities=12% Similarity=0.039 Sum_probs=79.8
Q ss_pred HHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCChhhHHHHHHHHHHCCCCCCHHH-------------HH
Q 038109 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT--AYCFKGNLTATSGVLKKMEEEKLGADART-------------YD 212 (324)
Q Consensus 148 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------------~~ 212 (324)
+.-.|+.++|..+--..++.. ....+...++ ++.-.++.+.+...|++-...++ +... +.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHH
Confidence 344566667766666555542 1122222222 23345566666666666555432 2211 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHh
Q 038109 213 ALVLGACRAGRVEEAFVLLRRMVDD---GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289 (324)
Q Consensus 213 ~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 289 (324)
.--+-..+.|++.+|.+.|.+.+.. ...|+...|.....+..+.|+.++|+.--++..+.... -...|..-..++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHH
Confidence 1122234667777777777776643 34455666666666667777777777666655543210 1111222223344
Q ss_pred CcCCHHHHHHHHHHHHhC
Q 038109 290 GLERFNEANFILKEMNKR 307 (324)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~ 307 (324)
-.++|++|.+-++...+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 457777777777665443
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.43 E-value=0.017 Score=36.84 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 209 RTYDALVLGACRAGRVEEAFVLLRRMVDD----GQ-SVL-YSTYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 209 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666677777777777776665432 11 122 344555555666666666666665543
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.38 E-value=0.059 Score=45.31 Aligned_cols=263 Identities=14% Similarity=0.007 Sum_probs=157.9
Q ss_pred cCCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--hc--CC-CCCchhhHhhhhch
Q 038109 6 KLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRA--RD--CC-FNTANTFNFITNTE 80 (324)
Q Consensus 6 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~--~~-~~~~~~~~~l~~~~ 80 (324)
++++.|.+...+..|..-...+....+.=...|..|=.+|.-.+++++|++++..=+ .+ |- .-.+.+...|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 355566666666666665555544444445567777778888889999998865421 11 11 11223344556666
Q ss_pred hhhhhHHHHHHHHH-HH------hcCCCCHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHH---
Q 038109 81 NSLSVLSDLCRTLA-RL------DKGFPRKSAYDTLIGRLCKLKK--------------------IDEALRVVDIMA--- 130 (324)
Q Consensus 81 ~~~~~~~~a~~~~~-~~------~~~~p~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~--- 130 (324)
--.|.+++|.-.-. .+ ........++-.+...|...|+ ++.|.+.|.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777654322 11 1111122244445555554442 233444443211
Q ss_pred -hCCCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH--
Q 038109 131 -EGGFG-LSAITFHPILSVLTRGKRMEEAWGLMEVMK----EIRV-SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE-- 201 (324)
Q Consensus 131 -~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-- 201 (324)
+.|-. .--..|..|-+.|.-.|+++.|....+.-. +-|- ......+..+..++.-.|+++.|.+.|+.-..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11111 123457777777888899999987766532 2232 12345778889999999999999999875432
Q ss_pred --CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038109 202 --EKL-GADARTYDALVLGACRAGRVEEAFVLLRRMVD----D-GQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268 (324)
Q Consensus 202 --~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (324)
.|- .....+..+|.++|.-..++++|+.++.+=.. . ...-....+.+|-.+|...|..++|+.+...
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 221 22455677788889888899999988865321 1 1112346778899999999999988876543
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.32 E-value=0.15 Score=43.44 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHc
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRARDC-CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAY-DTLIGRLCK 115 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~li~~~~~ 115 (324)
|-..|....+..-++.|..+|-+..+.| +.++...+++.+..++ .|+...|.++|+.=...+||...| +-.+.-+..
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3444444444555555555555555544 3444455555554332 344444555554444444544433 334444455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 116 LKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
.++-+.|..+|+...++ +.-+ ...|..+|.-=..-|+...+..+=++|..
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 55555555555533321 1111 23455555544455555555444444443
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.31 E-value=0.076 Score=46.30 Aligned_cols=156 Identities=19% Similarity=0.088 Sum_probs=83.1
Q ss_pred HhcCCCHHHHHHHHHH-HHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHH
Q 038109 45 AGHERDLETVRYLLNK-RARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEAL 123 (324)
Q Consensus 45 ~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 123 (324)
..-.++++.+.++... -.-..++ ....+.++..+.+.|-.+.|.++...- ..=.....+.|+++.|.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~----------~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP----------DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H----------HHHHHHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh----------HHHhHHHHhcCCHHHHH
Confidence 3456677776666541 1111122 334566677777777777776653321 12233445667777776
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 038109 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 124 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 203 (324)
++.++. .+...|..|.....+.|+++-|++.|++... +..++-.|.-.|+.+...++-+.....|
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 653222 2556777777777777777777777775543 4556666667777777666666666554
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038109 204 LGADARTYDALVLGACRAGRVEEAFVLLRR 233 (324)
Q Consensus 204 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 233 (324)
- +|....++.-.|+.++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 3 34444555556677766666543
No 228
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.6 Score=42.52 Aligned_cols=261 Identities=14% Similarity=0.078 Sum_probs=147.9
Q ss_pred HHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-C---CCchhhHhhhhchhhhhhHHHHHHHHH
Q 038109 19 VTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCC-F---NTANTFNFITNTENSLSVLSDLCRTLA 94 (324)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 94 (324)
+++.+...-+....|. ..|..+....-..|+++.|..+++.=.+.+. . .+..-+...+.-+...|+.+....++-
T Consensus 492 vld~I~~kls~~~~~~-iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vll 570 (829)
T KOG2280|consen 492 VLDKIDEKLSAKLTPG-ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLL 570 (829)
T ss_pred HHHHHHHHhcccCCCc-eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHH
Confidence 3444444444333343 3578888888888888888888876444321 1 122233444555666677666666655
Q ss_pred HHhcC------------CCC-HHHHHHHHH--------HHHccCCHHHHHHHH--HHHH----hCCCCCChhhHHHHHHH
Q 038109 95 RLDKG------------FPR-KSAYDTLIG--------RLCKLKKIDEALRVV--DIMA----EGGFGLSAITFHPILSV 147 (324)
Q Consensus 95 ~~~~~------------~p~-~~~~~~li~--------~~~~~~~~~~a~~~~--~~m~----~~g~~~~~~~~~~li~~ 147 (324)
.+... .|. ...|.-+++ .+.+.++-..+..-| +... ..|..|+. ...-+.
T Consensus 571 hlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~ 647 (829)
T KOG2280|consen 571 HLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANA 647 (829)
T ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence 54321 121 123333332 111222222222222 1100 12233332 333344
Q ss_pred HHccCcHHHHH----------HHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038109 148 LTRGKRMEEAW----------GLMEVMKE-IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVL 216 (324)
Q Consensus 148 ~~~~~~~~~a~----------~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 216 (324)
+.+........ ++.+.+.. .|..-..-+.+--+.-+..-|+..+|.++-.+.+ -||-..|-.-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 54444322111 12222221 2222233344555566677888888887766554 369999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHH
Q 038109 217 GACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE 296 (324)
Q Consensus 217 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 296 (324)
+++..+++++-+++-+.++. +.-|..++.+|.+.|+.++|.+++...... .-...+|.+.|++.+
T Consensus 724 aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~e 788 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKE 788 (829)
T ss_pred HHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHH
Confidence 99999999998887766542 245666889999999999999987654332 156788888999988
Q ss_pred HHHHHH
Q 038109 297 ANFILK 302 (324)
Q Consensus 297 a~~~~~ 302 (324)
|.++--
T Consensus 789 Aad~A~ 794 (829)
T KOG2280|consen 789 AADLAA 794 (829)
T ss_pred HHHHHH
Confidence 877644
No 229
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.24 E-value=0.52 Score=38.60 Aligned_cols=122 Identities=15% Similarity=0.039 Sum_probs=58.4
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhc-------hhhhh-hHHHHHHHHHHHhc----------CCCCHH--
Q 038109 45 AGHERDLETVRYLLNKRARDCCFNTANTFNFITNT-------ENSLS-VLSDLCRTLARLDK----------GFPRKS-- 104 (324)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-------~~~~~-~~~~a~~~~~~~~~----------~~p~~~-- 104 (324)
..+.|+++.|..++.+........++.....+... ....+ +++.|..++++..+ ..|+..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 34667777777777776543212222222222222 22333 55555555444311 112221
Q ss_pred ---HHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC
Q 038109 105 ---AYDTLIGRLCKLKKID---EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167 (324)
Q Consensus 105 ---~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 167 (324)
+...++.+|...+..+ +|.++++.+..... -...++..-+..+.+.++.+.+.+++.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666655433 34444444433211 12344445555555566666666666666654
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.22 E-value=0.2 Score=43.09 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDL----TAYNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
...++.+..+|.+.|++++|...|++..+.. |+. .+|..+..+|...|+.++|...+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555556666666666666666666655532 332 23555666666666666666666665553
No 231
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.17 E-value=0.92 Score=40.81 Aligned_cols=216 Identities=13% Similarity=0.061 Sum_probs=126.4
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHH-----HHH
Q 038109 39 DDLVNAAGHERDL--ETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDT-----LIG 111 (324)
Q Consensus 39 ~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-----li~ 111 (324)
+..=++|.+-++. -+...-++++.++|-.|+.. .+...++-.|++.+|.++|.+-.....-...|+- ...
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQ 678 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQ 678 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHH
Confidence 3333444444432 23333345667777778776 4566778899999999998875332222223322 234
Q ss_pred HHHccCCHHHHHHHHHHHHh--CCC-CCChhhHHHHHHHHHccCcHHHHHHHHH------HHHhCCCC---CCHHHHHHH
Q 038109 112 RLCKLKKIDEALRVVDIMAE--GGF-GLSAITFHPILSVLTRGKRMEEAWGLME------VMKEIRVS---PDLTAYNYL 179 (324)
Q Consensus 112 ~~~~~~~~~~a~~~~~~m~~--~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~------~m~~~~~~---~~~~~~~~l 179 (324)
-+...|+.++-..+.++--+ ..+ .|. +....+...|+.++|..+.- -+.+.+.+ .+..+...+
T Consensus 679 E~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~ 753 (1081)
T KOG1538|consen 679 EFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC 753 (1081)
T ss_pred HHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence 45555555554444433222 111 122 23345556677777765432 12222222 233444455
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-----------HHHHH
Q 038109 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY-----------STYAH 248 (324)
Q Consensus 180 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----------~~~~~ 248 (324)
..-+.+...+..|-++|..|-+. .+++......++|++|..+-+...+. .||. .-|..
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeE 822 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEE 822 (1081)
T ss_pred HHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHH
Confidence 55556677888999999888643 34667788899999999998876532 3332 22444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCCC
Q 038109 249 VMGALLRLGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~ 273 (324)
.-++|.+.|+-.+|.++++++....
T Consensus 823 AqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 823 AQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHHHhcchHHHHHHHHHhhhhh
Confidence 5578888999999999988876543
No 232
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.22 Score=45.74 Aligned_cols=213 Identities=9% Similarity=0.008 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh----cC----------C--CCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCC
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRAR----DC----------C--FNTANTFNFITNTENSLSVLSDLCRTLARLDKGF 100 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~----------~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 100 (324)
..+.++.++...+++-.-.-++....+ .+ . .........-++...+...++-|..+...-.
T Consensus 285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~--- 361 (933)
T KOG2114|consen 285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH--- 361 (933)
T ss_pred chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC---
Confidence 466777777777665433333333222 22 0 1111223344556666666666666544322
Q ss_pred CCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHH
Q 038109 101 PRKS----AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176 (324)
Q Consensus 101 p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 176 (324)
.+.. ......+-+.+.|++++|...|-+-... +.| +.+|.-|........--.+++.+.+.|+. +...-
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dht 434 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHT 434 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhH
Confidence 2222 3444555666788999988888766543 222 33566677777777778888888888875 66677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 256 (324)
+.|+.+|.+.++.++-.+..+.-. .|.. ..-....+..+.+.+-.++|..+-..... +......+ +-..
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~ 503 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDL 503 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHh
Confidence 788899999998888877776554 3222 11244566777777778888777655432 23333333 4456
Q ss_pred CCHHHHHHHHHHhC
Q 038109 257 GYYAQAVKFVMVCG 270 (324)
Q Consensus 257 g~~~~a~~~~~~~~ 270 (324)
|++++|.+++..+-
T Consensus 504 ~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 504 HNYEEALRYISSLP 517 (933)
T ss_pred cCHHHHHHHHhcCC
Confidence 88999988876654
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.10 E-value=0.068 Score=45.82 Aligned_cols=64 Identities=13% Similarity=-0.062 Sum_probs=47.2
Q ss_pred CchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038109 69 TANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS----AYDTLIGRLCKLKKIDEALRVVDIMAEG 132 (324)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~ 132 (324)
+...++.+..+|...|++++|...|++..+..|+.. +|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777777788888888888877766666532 4777778888888888888888777764
No 234
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.01 E-value=0.079 Score=42.73 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh-----CCCchhHHHHHHH
Q 038109 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK-----RDLKMGFKLRDYY 319 (324)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~~ 319 (324)
++..++..+...|+++.+...++.+....+ -+...|..++.+|.+.|+...|+..++++.+ .|+.|...+...|
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 445555666666666666666666655542 2555666666666666666666666665533 4666666655555
Q ss_pred hh
Q 038109 320 EI 321 (324)
Q Consensus 320 ~~ 321 (324)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 44
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.96 E-value=0.39 Score=34.61 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=36.9
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038109 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222 (324)
Q Consensus 143 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 222 (324)
.++..+...+.......+++.+...+. .+...++.++..|++.+ .++..+.++. . .+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 344444444455555555555444432 34445555555555432 2222222221 0 12222333455555555
Q ss_pred CHHHHHHHHHHH
Q 038109 223 RVEEAFVLLRRM 234 (324)
Q Consensus 223 ~~~~a~~~~~~m 234 (324)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555544
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.85 E-value=1.2 Score=39.47 Aligned_cols=160 Identities=14% Similarity=0.156 Sum_probs=106.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHHHH
Q 038109 143 PILSVLTRGKRMEEAWGLMEVMKEIR-VSPD-----LTAYNYLLTAYCF----KGNLTATSGVLKKMEEEKLGADARTYD 212 (324)
Q Consensus 143 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 212 (324)
.+++..+=.||-+.+++.+.+-.+.+ +... .-+|...+..++. ....+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34445566688999998888766543 2211 1234444444443 44678899999999876 46766665
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHH-H
Q 038109 213 ALV-LGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS-K 287 (324)
Q Consensus 213 ~li-~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 287 (324)
..- +.+...|++++|.+.|++..... .+.....+--+.-.+.-.+++++|...+..+.+.. .-+..+|.-+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 443 55667899999999999765321 12234455556677888999999999999998753 334555554433 4
Q ss_pred HhCcCCH-------HHHHHHHHHHH
Q 038109 288 LIGLERF-------NEANFILKEMN 305 (324)
Q Consensus 288 ~~~~g~~-------~~a~~~~~~m~ 305 (324)
+...|+. ++|.++|.+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4567877 88999988774
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.83 E-value=0.31 Score=34.89 Aligned_cols=75 Identities=19% Similarity=0.126 Sum_probs=41.3
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 038109 183 YCFKGNLTATSGVLKKMEEEKLGA--DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257 (324)
Q Consensus 183 ~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 257 (324)
..+.|++++|.+.|+.+...-+.. ....--.++.+|.+.+++++|...+++..+....--..-|...+.+++...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 345677777777777776552211 234445566777777777777777777665432111223444444444433
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.79 E-value=0.46 Score=34.20 Aligned_cols=85 Identities=5% Similarity=-0.040 Sum_probs=44.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038109 107 DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186 (324)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 186 (324)
..++..+...+........++.+...+. .+...++.++..|++.+. .+....++. . ++......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 4555666666666666666666666553 455566666666665432 222233221 1 1222233355566666
Q ss_pred CChhhHHHHHHHH
Q 038109 187 GNLTATSGVLKKM 199 (324)
Q Consensus 187 ~~~~~a~~~~~~m 199 (324)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666655554
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.55 Score=39.60 Aligned_cols=92 Identities=14% Similarity=0.003 Sum_probs=54.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC-----CCCC---------ChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHH
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEG-----GFGL---------SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA 175 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~-----g~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 175 (324)
.+.|.+.|++..|...|++.... +..+ -..++..+.-++.+.+++..|...-......+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 45677888888888888876542 1111 12344455555566666666666666655554 235555
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
.-.-..+|...|+++.|+..|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555555666666666666666666654
No 240
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.71 E-value=0.58 Score=34.71 Aligned_cols=101 Identities=13% Similarity=0.180 Sum_probs=48.4
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 038109 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 124 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 203 (324)
+.++.+.+.+++|+...+..+++.+.+.|++. .+..+.+.++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 44445555666666666666666666666543 33444444544554444433322222 223333333333322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038109 204 LGADARTYDALVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 204 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 234 (324)
=...+..++..+...|++-+|.++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0112444555555666666666665543
No 241
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.71 E-value=0.2 Score=40.51 Aligned_cols=78 Identities=21% Similarity=0.076 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHHH
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD-----DGQSVLYSTYAH 248 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 248 (324)
.++..++..+...|+++.+.+.++++....+- +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45677888888889999999999888887665 888899999999999999999988888765 378888777665
Q ss_pred HHHH
Q 038109 249 VMGA 252 (324)
Q Consensus 249 li~~ 252 (324)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.77 Score=37.88 Aligned_cols=46 Identities=13% Similarity=-0.057 Sum_probs=20.2
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 231 (324)
.+|-+++|++.-++..+-+.. |.-.-.+....+--.|++.++.++.
T Consensus 187 E~g~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HhccchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHH
Confidence 344444444444444433322 3334444444444444444444443
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.59 E-value=0.16 Score=40.44 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcC--CCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRARDC--CFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR----KSAYDTLI 110 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~li 110 (324)
.|+.-+. +.+.|++..|.+.|....+.. -.-.+..+-.|..++...|++++|...|..+.+.+|+ ..++--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3555544 334444666666665555431 1111233344555555555555555555555444432 12444444
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 038109 111 GRLCKLKKIDEALRVVDIMAE 131 (324)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~m~~ 131 (324)
....+.|+.++|-..|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 455555555555555555544
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.55 E-value=1.3 Score=37.58 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc---CHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL---DTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.++..+.+.+-+.|+++.|...+..+...+... ++...-.-+..+-..|+..+|+..+++..+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555555555555554444422111 222222334444444555555555554443
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.51 E-value=0.38 Score=34.48 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=33.9
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038109 80 ENSLSVLSDLCRTLARLDKGFPR----KSAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133 (324)
Q Consensus 80 ~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 133 (324)
..+.|++++|.+.|+.+...+|- ..+--.++.+|.+.+++++|...+++.++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 35566666666666666666542 2245556677777777777777777766643
No 246
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.40 E-value=0.83 Score=34.48 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=46.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
.+..+..-|.+.|+.+.|.+.|.++.+....+. ...+-.+|....-.+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677888888888888888888888887655443 34566777777778888888777776554
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=1.4 Score=40.90 Aligned_cols=246 Identities=9% Similarity=-0.020 Sum_probs=144.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCc--hhhHhhhhchhhhhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA--NTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRL 113 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~li~~~ 113 (324)
....-|....+...++-|..+-+ ..+..++. .......+-+.+.|++++|...+-+.-... | ..+|.-|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-----s~Vi~kf 407 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-----SEVIKKF 407 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-----HHHHHHh
Confidence 35566666677777777776643 33333332 233334455667899999988776654322 3 2456677
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 038109 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193 (324)
Q Consensus 114 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 193 (324)
....+...--.+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777888888899999999886 66667889999999999988877766544 3321 112345667777778788887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC
Q 038109 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 194 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (324)
.+-..... +......+ +-..+++++|++.+..+.-...-+....|...+- ...+++-..++-+.....
T Consensus 484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t~~ili~~~t~~ 551 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEETMKILIELITEL 551 (933)
T ss_pred HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHHHHHHHHHHhhc
Confidence 66554432 33333333 3467889999999987643222233333333221 234455544443333222
Q ss_pred CCcCHhHHHHHH-----HHHhCcCCHHHHHHHHHHHHh
Q 038109 274 IKLDTELFGSLG-----SKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 274 ~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.+++.......+ ....-.+++....-.++.|.+
T Consensus 552 ~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 552 NSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred CCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 222222222222 223445677766666665654
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=1.5 Score=36.25 Aligned_cols=155 Identities=10% Similarity=-0.034 Sum_probs=105.2
Q ss_pred hhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCcHH
Q 038109 80 ENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEG---GFGLSAITFHPILSVLTRGKRME 155 (324)
Q Consensus 80 ~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~~~~~ 155 (324)
....|+..+|...++++.+.+| |..++.-.-.+|...|+.+.-...+++.... +++....+-....-++...|-++
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3456777777788888877777 5668888888999999999988888888764 22222233333344455778999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG---ADARTYDALVLGACRAGRVEEAFVLLR 232 (324)
Q Consensus 156 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 232 (324)
+|++.-++..+.+ +-|...-.+....+...|++.++.+...+-...--. .-..-|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9998888877764 346777777888888889999998776554332111 011223233344566789999999997
Q ss_pred HHH
Q 038109 233 RMV 235 (324)
Q Consensus 233 ~m~ 235 (324)
.-.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 643
No 249
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.11 E-value=1.4 Score=35.61 Aligned_cols=138 Identities=9% Similarity=0.107 Sum_probs=93.7
Q ss_pred cCChhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHH
Q 038109 186 KGNLTATSGVLKKMEE-EKLGADARTYDALVLGACR-AG-RVEEAFVLLRRMVDD-GQSVLYSTYAHVMGALLRLGYYAQ 261 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~ 261 (324)
.....+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+... |..++..+...++..++..+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445667777764332 2234477777777777765 22 223333444444433 456777888889999999999999
Q ss_pred HHHHHHHhCCC-CCCcCHhHHHHHHHHHhCcCCHHHHHHHHHH-----HHhCCCchhHHHHHHHhhhc
Q 038109 262 AVKFVMVCGGR-DIKLDTELFGSLGSKLIGLERFNEANFILKE-----MNKRDLKMGFKLRDYYEINV 323 (324)
Q Consensus 262 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----m~~~~~~~~~~~~~~~~~~v 323 (324)
-.++|...... ++.-|...|..+|+.....|+..-..++.++ +++.|+..++.+...+..+.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99988877665 6667888999999999999998877777764 35667777777666655543
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.08 E-value=0.29 Score=38.98 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=64.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCC-C-CHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFG--LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS-P-DLTAYNYLL 180 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~li 180 (324)
.|+.-+..+ +.|++..|...|....+.... -....+-.|..++...|+++.|..+|..+.+.-.+ | -....--+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566655544 456688888888887775321 12344556778888888888888888877764321 1 135566666
Q ss_pred HHHHhcCChhhHHHHHHHHHHC
Q 038109 181 TAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
.+..+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777788888888888887765
No 251
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.02 E-value=0.81 Score=32.25 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 239 (324)
...++.....|+-++-.+++.++.+ +-.+++.....+..+|.+.|+..++.+++++..+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344444444444444444444433 1223444444444555555555555555554444443
No 252
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.95 E-value=1 Score=34.01 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHH
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD--ARTYDALVLGACRAGRVEEAFVLLRRMVDD---GQSVLYSTYAH 248 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ 248 (324)
..+..+...|++.|+.+.|.+.|.++.+....|. ...+-.+|......+++..+...+.+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566677777777777777777777776644433 344566677777777777777776655432 22222222112
Q ss_pred HHHH--HHhcCCHHHHHHHHHHhC
Q 038109 249 VMGA--LLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 249 li~~--~~~~g~~~~a~~~~~~~~ 270 (324)
+..+ +...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2222 335678888777765543
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.87 E-value=0.13 Score=28.41 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=10.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
.+..+|...|++++|.++|++..+.
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 254
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.72 Score=38.95 Aligned_cols=123 Identities=11% Similarity=0.006 Sum_probs=79.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHC-----CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 038109 181 TAYCFKGNLTATSGVLKKMEEE-----KLG---------ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTY 246 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~-----~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 246 (324)
..|.+.|++..|..-|++.... +.. .-..+++.+.-+|.+.+++.+|++.....+..+. +|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 4667777777777777664321 111 1224567778888888888888888888876542 455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHH-HHHHHHHHH
Q 038109 247 AHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNE-ANFILKEMN 305 (324)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~ 305 (324)
-.=-+++...|+++.|+..|+.+.+..+. |...-+.++..--+..+..+ ..++|..|-
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55567888888999999988888876422 44444445554444444433 367777774
No 255
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.82 E-value=2.4 Score=36.65 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHCCCCcC----HHHHHHHHHH--HHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHH
Q 038109 225 EEAFVLLRRMVDDGQSVL----YSTYAHVMGA--LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298 (324)
Q Consensus 225 ~~a~~~~~~m~~~~~~p~----~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 298 (324)
.+-..+-+-+.+.|+.|- ...-|.|.+| +..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|.
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 333333333445566552 3334444443 5577888888755444443 6789999999999999999999999
Q ss_pred HHHHHHHh
Q 038109 299 FILKEMNK 306 (324)
Q Consensus 299 ~~~~~m~~ 306 (324)
.++..+.-
T Consensus 516 ~~l~~LP~ 523 (549)
T PF07079_consen 516 EYLQKLPP 523 (549)
T ss_pred HHHHhCCC
Confidence 99998765
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.75 E-value=2.1 Score=35.79 Aligned_cols=221 Identities=10% Similarity=0.027 Sum_probs=123.7
Q ss_pred cCCCHHHHHHHHHHHHhc--CCCCCchhhHhhhhchhhhhhHHHHHHHH-HHH---hcCCC---CHHHHHHHHHHHHccC
Q 038109 47 HERDLETVRYLLNKRARD--CCFNTANTFNFITNTENSLSVLSDLCRTL-ARL---DKGFP---RKSAYDTLIGRLCKLK 117 (324)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~---~~~~p---~~~~~~~li~~~~~~~ 117 (324)
...+.++++..|.+-+.+ +...-..++..+..+.++.|.++++...- ..+ .+... -..+|-.+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777665543 11112245666777778888887776542 222 11111 1225556666666666
Q ss_pred CHHHHHHHHHHHHh-CCCCCC---hhhHHHHHHHHHccCcHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC
Q 038109 118 KIDEALRVVDIMAE-GGFGLS---AITFHPILSVLTRGKRMEEAWGLMEVMKEIR-----VSPDLTAYNYLLTAYCFKGN 188 (324)
Q Consensus 118 ~~~~a~~~~~~m~~-~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~ 188 (324)
++.+++.+-..-.. .|..|. -....++-.+..-.+.++++++.|+...+.. ......+|-.+-+.|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 66666655443332 222221 1233345556666677888888887755421 11234567788888888888
Q ss_pred hhhHHHHHHHHH----HCCCCCCHH-HHH-----HHHHHHHhcCCHHHHHHHHHHHHH----CCCCcC-HHHHHHHHHHH
Q 038109 189 LTATSGVLKKME----EEKLGADAR-TYD-----ALVLGACRAGRVEEAFVLLRRMVD----DGQSVL-YSTYAHVMGAL 253 (324)
Q Consensus 189 ~~~a~~~~~~m~----~~~~~~~~~-~~~-----~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~ 253 (324)
+++|.-+..+.. ..++. |.. -|. .|.-++...|+.-.|.+..++..+ .|-+|. ......+.+.|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 888776655433 23333 322 222 234556667777777776665433 344432 34455666777
Q ss_pred HhcCCHHHHHHHHHH
Q 038109 254 LRLGYYAQAVKFVMV 268 (324)
Q Consensus 254 ~~~g~~~~a~~~~~~ 268 (324)
-..|+.+.|+.-|+.
T Consensus 257 R~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccHhHHHHHHHH
Confidence 788888877766543
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.70 E-value=2 Score=37.64 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHH
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGA-DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL--YSTYAHVM 250 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li 250 (324)
..+..++-+.|+.++|.+.|++|.+..... +......|+.++...+.+.++..++.+..+... |. ..+|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHH
Confidence 445566667888888888888887653322 344667788888888888888888887643322 33 34455544
No 258
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.50 E-value=1.4 Score=32.67 Aligned_cols=137 Identities=12% Similarity=0.186 Sum_probs=92.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038109 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 158 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 237 (324)
.+.+..+.+.+++|+...+..+++.+.+.|++.... .+...++-+|.......+-.+.. ....+.++--+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 456677778899999999999999999999876654 45566666776666555543333 233344444444432
Q ss_pred -CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q 038109 238 -GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309 (324)
Q Consensus 238 -~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 309 (324)
+ ..+..+++.+...|++-+|.++.+...... ......++++..+.++...-..+++-..+++.
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~ 151 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEERNL 151 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhH
Confidence 2 135667888999999999999987764432 12234577777788887777777776666553
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.46 E-value=1.7 Score=33.50 Aligned_cols=166 Identities=22% Similarity=0.119 Sum_probs=64.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH-H
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT-A 182 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~ 182 (324)
.+......+...+++..+...+...... ........+......+...++...+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3444444444444444444444444331 111222333333333344444444444444444332221 111111111 4
Q ss_pred HHhcCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038109 183 YCFKGNLTATSGVLKKMEEEKL--GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260 (324)
Q Consensus 183 ~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 260 (324)
+...|+++.|...+.+...... ......+......+...++.+++...+..............+..+-..+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 4445555555555554433111 01122222222333444455555555554443211102333444444444445555
Q ss_pred HHHHHHHHhCC
Q 038109 261 QAVKFVMVCGG 271 (324)
Q Consensus 261 ~a~~~~~~~~~ 271 (324)
.+...+.....
T Consensus 220 ~a~~~~~~~~~ 230 (291)
T COG0457 220 EALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHh
Confidence 55555544444
No 260
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.28 E-value=2.9 Score=35.38 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA---DARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 171 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
....++..+...+.+.|.++.|...+..+...+... +....-.-+..+-..|+.++|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677788888888888888888888887654221 233444445566677888888888887776
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=2.4 Score=33.46 Aligned_cols=92 Identities=16% Similarity=0.040 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHhCCC---CCCcCHhHH
Q 038109 210 TYDALVLGACRAGRVEEAFVLLRRMVDD----GQSVLY-STYAHVMGALLRLGYYAQAVKFVMVCGGR---DIKLDTELF 281 (324)
Q Consensus 210 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~ 281 (324)
.+...-+.+++...+++|-..+.+-... .--|+. ..|...|-.+....++..|++.++.--+. .-.-+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3455556677777777776655443211 111221 23555555666777999999999874432 223367788
Q ss_pred HHHHHHHhCcCCHHHHHHHHH
Q 038109 282 GSLGSKLIGLERFNEANFILK 302 (324)
Q Consensus 282 ~~l~~~~~~~g~~~~a~~~~~ 302 (324)
..|+.+|- .|+.+++.+++.
T Consensus 232 enLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHHc
Confidence 88888885 588888877764
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=2.8 Score=34.12 Aligned_cols=175 Identities=11% Similarity=0.052 Sum_probs=108.4
Q ss_pred hhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHH
Q 038109 77 TNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156 (324)
Q Consensus 77 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 156 (324)
+..+.....-+...++++..... +....+ .-.......|+..+|..+|+........ +...--.+..+|...|+.+.
T Consensus 110 VdgF~G~qPesqlr~~ld~~~~~-~~e~~~-~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~ 186 (304)
T COG3118 110 VDGFQGAQPESQLRQFLDKVLPA-EEEEAL-AEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEA 186 (304)
T ss_pred ccccCCCCcHHHHHHHHHHhcCh-HHHHHH-HHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHH
Confidence 33333333344455555554322 112222 2234566788888888888888875433 45566677888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA-DARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 157 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
|..++..+...--........+-|..+.+.....+...+-.+.-.. | |...-..+...+...|+.++|.+.+-.+.
T Consensus 187 A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 187 AQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998888765432222233334566666777666666666665553 4 67777778888888999998888766655
Q ss_pred HC--CCCcCHHHHHHHHHHHHhcCC
Q 038109 236 DD--GQSVLYSTYAHVMGALLRLGY 258 (324)
Q Consensus 236 ~~--~~~p~~~~~~~li~~~~~~g~ 258 (324)
+. |. -|...=..++..+.-.|.
T Consensus 264 ~~d~~~-~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 264 RRDRGF-EDGEARKTLLELFEAFGP 287 (304)
T ss_pred Hhcccc-cCcHHHHHHHHHHHhcCC
Confidence 43 33 334445556666666663
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.02 E-value=0.17 Score=27.95 Aligned_cols=26 Identities=38% Similarity=0.402 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 211 YDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 211 ~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
+..+...|.+.|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.00 E-value=1.5 Score=30.92 Aligned_cols=92 Identities=17% Similarity=0.038 Sum_probs=58.1
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcC
Q 038109 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA---YNYLLTAYCFKG 187 (324)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~ 187 (324)
-+....|+++.|++.|.+...- .+-....||.-.+++.-.|+.++|++=+++..+..-..+... |..-...|-..|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3556677788888887777654 233567777777777777777777777776655432223222 222334456677
Q ss_pred ChhhHHHHHHHHHHCC
Q 038109 188 NLTATSGVLKKMEEEK 203 (324)
Q Consensus 188 ~~~~a~~~~~~m~~~~ 203 (324)
+-+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777666555
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.93 E-value=3 Score=34.19 Aligned_cols=221 Identities=11% Similarity=0.022 Sum_probs=127.0
Q ss_pred hhhhhhHHHHHHHHHHHhcC----CCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHhC--------CCCCC----
Q 038109 80 ENSLSVLSDLCRTLARLDKG----FPRKS------AYDTLIGRLCKLKKIDEALRVVDIMAEG--------GFGLS---- 137 (324)
Q Consensus 80 ~~~~~~~~~a~~~~~~~~~~----~p~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~~~~---- 137 (324)
..+.|+.+.|...+.+.... .|+.. .|+.-.+.+.+..+++.|...+++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999988542 24332 3555555555444888888777765442 12233
Q ss_pred -hhhHHHHHHHHHccCcHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 038109 138 -AITFHPILSVLTRGKRME---EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213 (324)
Q Consensus 138 -~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 213 (324)
..++..++.++...+..+ +|.++++.+..... -...++-.-+..+.+.++.+.+.+++.+|...-.. ....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHH
Confidence 246677778888777654 45556666654432 23555656677777899999999999999986221 3344555
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHCCCCcCHH-HHH-HHHH---HHHhcCC------HHHHHHHHHHhCC-CCCCcCH
Q 038109 214 LVLGA---CRAGRVEEAFVLLRRMVDDGQSVLYS-TYA-HVMG---ALLRLGY------YAQAVKFVMVCGG-RDIKLDT 278 (324)
Q Consensus 214 li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~-~li~---~~~~~g~------~~~a~~~~~~~~~-~~~~~~~ 278 (324)
++..+ ... ....|...+..+....+.|... ... .++. ...+.++ ++....++....+ .+.+.+.
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 55444 443 3456777777776665556553 111 1111 1112111 4444444443222 1222333
Q ss_pred hHHHHH-------HHHHhCcCCHHHHHHHHHH
Q 038109 279 ELFGSL-------GSKLIGLERFNEANFILKE 303 (324)
Q Consensus 279 ~~~~~l-------~~~~~~~g~~~~a~~~~~~ 303 (324)
.+-..+ ...+.+.+++++|.+.|+-
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 332222 2345567999999999874
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.85 E-value=1.9 Score=31.66 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=27.1
Q ss_pred HccCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 149 TRGKRMEEAWGLMEVMKEIRVS-PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 149 ~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
.+.++.+++..++.-+.-.... |...++.. ..+...|+|.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 3455666666666666553211 12222322 2344666666666666666554
No 267
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.83 Score=37.29 Aligned_cols=98 Identities=14% Similarity=0.081 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 038109 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK---LGAD--ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244 (324)
Q Consensus 170 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 244 (324)
+..+.+...++..-....+++++...+-+++..- ..|+ .++|-.++ -.=++++++.++..=.+.|+-||..
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccchh
Confidence 3344455555555555566666666665555431 1111 22222222 2224556666666656666667777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 245 TYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
+++.+|+.+.+.+++.+|.++...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777776666666554443
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.77 E-value=5.4 Score=36.61 Aligned_cols=254 Identities=13% Similarity=0.094 Sum_probs=131.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhc-CCCCCchhhHhhhhchhhhhhHHHHHHHHHHHh--------------------
Q 038109 39 DDLVNAAGHERDLETVRYLLNKRARD-CCFNTANTFNFITNTENSLSVLSDLCRTLARLD-------------------- 97 (324)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------------------- 97 (324)
...|....+.|++-.+.++++.--.. .-..-...|+.+...+.....+++|.+.+..-.
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~ 843 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEV 843 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHH
Confidence 34556666777776666665431100 001112356666666666666666666655321
Q ss_pred --cCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHH
Q 038109 98 --KGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT 174 (324)
Q Consensus 98 --~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 174 (324)
...| +....-.+.+++.+.|.-++|.+.|-+-. . | -..+..|...+++.+|.++-++..- |.+.
T Consensus 844 la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~ 910 (1189)
T KOG2041|consen 844 LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQ 910 (1189)
T ss_pred HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHH
Confidence 1123 23345556677777777777766653322 1 1 2234566666777777666554321 1211
Q ss_pred HH--------------HHHHHHHHhcCChhhHHHHHHHHHHC----CCCCCHH----HHHH-HHHHHH----------hc
Q 038109 175 AY--------------NYLLTAYCFKGNLTATSGVLKKMEEE----KLGADAR----TYDA-LVLGAC----------RA 221 (324)
Q Consensus 175 ~~--------------~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~----~~~~-li~~~~----------~~ 221 (324)
|. .--|..+.+.|.+-+|-+++.+|.+. +.+|-.. ...+ |+.-+. ..
T Consensus 911 tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~ 990 (1189)
T KOG2041|consen 911 TLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKH 990 (1189)
T ss_pred HHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 11 12345566777777777777777643 3332211 1111 111111 34
Q ss_pred CCHHHHHHHHHHHHHC---CCC------cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC-CCCCcCHhHHHHHHHHHhCc
Q 038109 222 GRVEEAFVLLRRMVDD---GQS------VLYSTYAHVMGALLRLGYYAQAVKFVMVCGG-RDIKLDTELFGSLGSKLIGL 291 (324)
Q Consensus 222 g~~~~a~~~~~~m~~~---~~~------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 291 (324)
|..++|..+++.-.-. .+. .....|-.|.+--...|.++.|...--.+.. ..+-|....|+.+.-+-+..
T Consensus 991 g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 991 GFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred CcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 6666777655543211 110 1234455555666677888888775444444 24567778887776655554
Q ss_pred CCHHHHHHHHHHHH
Q 038109 292 ERFNEANFILKEMN 305 (324)
Q Consensus 292 g~~~~a~~~~~~m~ 305 (324)
..+.-..+.|-++.
T Consensus 1071 raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1071 RAFGTCSKAFMKLE 1084 (1189)
T ss_pred hhhhhhHHHHHHHH
Confidence 44444444444443
No 269
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=2.2 Score=34.95 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=53.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGG---FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 181 (324)
+...++..-....++++++..+-+++... ..|+.. -..+++.+.+ -++++++.++..=.+.|+-||..+++.+|+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D 143 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMD 143 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHH
Confidence 44445544455566666666666665431 122222 2223333333 344566666666666676677777777777
Q ss_pred HHHhcCChhhHHHHHHHHHHC
Q 038109 182 AYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 182 ~~~~~~~~~~a~~~~~~m~~~ 202 (324)
.+.+.+++.+|.++.-.|...
T Consensus 144 ~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 144 SFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHhcccHHHHHHHHHHHHHH
Confidence 777777776666666655543
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.69 E-value=0.18 Score=26.44 Aligned_cols=24 Identities=8% Similarity=0.038 Sum_probs=14.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIM 129 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m 129 (324)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666666666666666666663
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.67 E-value=0.21 Score=26.18 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 210 TYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 210 ~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566677777777777777776643
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.61 E-value=7.7 Score=37.85 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=26.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q 038109 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 215 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (324)
+.+|..+|+|++|+.+..++.....+ -..+--.|+.-+...++.-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 45555666666666665555321100 01111334555556666655555554443
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.48 E-value=2.2 Score=31.29 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=61.3
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLG-ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 259 (324)
..-.+.++.+++..+++.+.-..+. |...++.. ..+.+.|++.+|.++|+++...+ |....-..|+..|.... -
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~-~ 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL-G 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc-C
Confidence 3445677899999999988875332 12333333 34678899999999999987553 33333333444433322 2
Q ss_pred HHHHHHH-HHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHH
Q 038109 260 AQAVKFV-MVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299 (324)
Q Consensus 260 ~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 299 (324)
+-.++.+ +++.+.+..|+.. .+++.+....+...|..
T Consensus 93 D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred ChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 2233333 3445544333332 35555555555444443
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.37 E-value=4.8 Score=39.14 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=70.7
Q ss_pred CCChhhHHHHH----HHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-
Q 038109 135 GLSAITFHPIL----SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR- 209 (324)
Q Consensus 135 ~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~- 209 (324)
.|+...+..+. ..+.....+++|--.|+..-+ ..--+.+|..+|+|.+|+.+-.++... -|..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 34554444433 444556677777666665432 123567788888888888887776542 1222
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q 038109 210 -TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 210 -~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (324)
+--.|+.-+...++.-+|-++..+.... |. ..+..+++...+++|.++.....
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 2356778888888888888888776542 22 23344556667777777654443
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=3.7 Score=33.39 Aligned_cols=181 Identities=14% Similarity=0.068 Sum_probs=118.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 188 (324)
-+++|.....-+...+.+++.... +....+.. .......|+..+|...|+........ +...--.+..+|...|+
T Consensus 109 pVdgF~G~qPesqlr~~ld~~~~~---~~e~~~~~-~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~ 183 (304)
T COG3118 109 PVDGFQGAQPESQLRQFLDKVLPA---EEEEALAE-AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGD 183 (304)
T ss_pred CccccCCCCcHHHHHHHHHHhcCh---HHHHHHHH-hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCC
Confidence 345555544555555555555433 23333322 34466789999999999988776433 45666778899999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV-LYSTYAHVMGALLRLGYYAQAVKFVM 267 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 267 (324)
.+.|..++..+...--.........-|..+.+.....+...+-++.-.. | |...-..+...+...|+.+.|.+.+-
T Consensus 184 ~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll 260 (304)
T COG3118 184 VEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLL 260 (304)
T ss_pred hHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998876533323333334456666666666666666666543 4 55555667788999999999988765
Q ss_pred HhCC--CCCCcCHhHHHHHHHHHhCcCCHHHHH
Q 038109 268 VCGG--RDIKLDTELFGSLGSKLIGLERFNEAN 298 (324)
Q Consensus 268 ~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~ 298 (324)
.+.+ .|.. |...-..+++.+.-.|.-+.+.
T Consensus 261 ~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 261 ALLRRDRGFE-DGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHhccccc-CcHHHHHHHHHHHhcCCCCHHH
Confidence 5543 3444 6666677888887777554443
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.23 E-value=2.6 Score=31.37 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=61.9
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCh
Q 038109 114 CKLKKIDEALRVVDIMAEGGFGLS-AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL---TAYCFKGNL 189 (324)
Q Consensus 114 ~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li---~~~~~~~~~ 189 (324)
.+.+..++|+.-|..+.+.|...= .-.-.-........|+...|...|++.-+....|...-=.+-+ ..+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 345556666666666666544310 0001111123345566666666666665544333322111111 123345666
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 038109 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241 (324)
Q Consensus 190 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 241 (324)
+++....+-+...+-+.-...-..|--+-.+.|++.+|.+.|..+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 6666555555444333334444555555556666666666666665543333
No 277
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.73 E-value=6.6 Score=34.67 Aligned_cols=179 Identities=13% Similarity=0.047 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038109 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181 (324)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 181 (324)
|....-+++..+..+..+.-++.+-.+|...|- +...|..+++.|..+ ..+.-..+|+++.+..+. |++.-.-+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 445566777777777777777777777777543 556677777777776 556667777777776553 4444444444
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHh
Q 038109 182 AYCFKGNLTATSGVLKKMEEEKLGA-----DARTYDALVLGACRAGRVEEAFVLLRRMVDD-GQSVLYSTYAHVMGALLR 255 (324)
Q Consensus 182 ~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~ 255 (324)
-|.+ ++.+.+...|.+....-++. -...|.-++.. -..+.+..+.+...+.+. |..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 77777777777766542221 11234444321 145566666666666543 443444555555566777
Q ss_pred cCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHH
Q 038109 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 288 (324)
..++++|.+++..+.+..- .|...-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 7778888888777776642 3555555565544
No 278
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.72 E-value=1.4 Score=29.04 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 038109 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201 (324)
Q Consensus 153 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 201 (324)
+.-++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+..+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555666666666667777777777777777777777777766653
No 279
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.59 E-value=3.6 Score=31.28 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH--
Q 038109 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA--LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA-- 247 (324)
Q Consensus 172 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-- 247 (324)
-...|..++.... .+.. +.....+.+......-...++.+ +...+...|++++|..-++..... |....+.
T Consensus 53 AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l 127 (207)
T COG2976 53 ASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHH
Confidence 3455666666543 3333 55555666666532212222332 345678899999999998876643 3223333
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 248 ---HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 248 ---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
.|.+.....|.+++|+..++...+.++. ......-.+.+...|+-++|..-|++-.+.+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3456677889999999999888776543 3334445678889999999999999988887
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.54 E-value=3.4 Score=30.83 Aligned_cols=139 Identities=12% Similarity=0.066 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHH--
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART-YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST-YAHV-- 249 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~l-- 249 (324)
..|..-+.. .+.+..++|+.-|..+.+.|..--... --.......+.|+...|...|.+.-...-.|-..- ...|
T Consensus 60 d~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 334433332 344555666666666665544321111 11122334455666666666666554433332220 0111
Q ss_pred HHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhH
Q 038109 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGF 313 (324)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 313 (324)
.-.+...|-++....-.+-+...+-+.....-..|.-+-.+.|++.+|.+.|..+.+..-.|.+
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 1123455666666655555544443333333444545555666666666666666654444433
No 281
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.46 E-value=2.8 Score=29.63 Aligned_cols=89 Identities=16% Similarity=0.022 Sum_probs=64.9
Q ss_pred chhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCChhhHHHH---HHHHHccCc
Q 038109 79 TENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEG-GFGLSAITFHPI---LSVLTRGKR 153 (324)
Q Consensus 79 ~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l---i~~~~~~~~ 153 (324)
+....|+.+.|.+.|.+.....| +..+||.=..++--.|+.++|+.=+++..+- |-. +...+.+. ...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 45778888999988888877666 5668998889999999999999888887763 322 33323222 234666788
Q ss_pred HHHHHHHHHHHHhCC
Q 038109 154 MEEAWGLMEVMKEIR 168 (324)
Q Consensus 154 ~~~a~~~~~~m~~~~ 168 (324)
.+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888777766
No 282
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.44 E-value=2 Score=32.81 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=9.7
Q ss_pred cCHHHHHHHHHHHHhcCCHHHH
Q 038109 241 VLYSTYAHVMGALLRLGYYAQA 262 (324)
Q Consensus 241 p~~~~~~~li~~~~~~g~~~~a 262 (324)
+|+..+..|...+.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444443
No 283
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.41 E-value=6.8 Score=34.02 Aligned_cols=259 Identities=8% Similarity=0.063 Sum_probs=152.5
Q ss_pred CCCccchhHHHHHHHHhhhcCCC-CCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhc--hhhh
Q 038109 8 PTKFLIPQSVLVTRSFTKSGAFP-DEPT-SAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNT--ENSL 83 (324)
Q Consensus 8 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~--~~~~ 83 (324)
...+.+.+|-.++.........+ .... ...-+.+|++|... +.+.....+....+. .| ...|-.+..+ +-+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 34566788888888887766432 2222 23356677777654 566666666666553 22 2233344333 3567
Q ss_pred hhHHHHHHHHHHHhcCC-----C--CHH---------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CChhhHHH
Q 038109 84 SVLSDLCRTLARLDKGF-----P--RKS---------AYDTLIGRLCKLKKIDEALRVVDIMAEGGFG----LSAITFHP 143 (324)
Q Consensus 84 ~~~~~a~~~~~~~~~~~-----p--~~~---------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~ 143 (324)
+.++.|.+.+..-.+.. | |.. -=+..++.+...|++.++..+++++...=++ .+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 88888888887664331 1 111 1256788999999999999999998865333 67888888
Q ss_pred HHHHHHccC---------------cHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHH
Q 038109 144 ILSVLTRGK---------------RMEEAWGLMEVMKEI------RVSPDLTAYNYLLTAYCFKG--NLTATSGVLKKME 200 (324)
Q Consensus 144 li~~~~~~~---------------~~~~a~~~~~~m~~~------~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~ 200 (324)
++-.++++= -++.+.-..++|... .+.|.......++....-.. +..--+++++.-.
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 665554431 123333333333322 23455555555555544332 2223334444444
Q ss_pred HCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 201 EEKLGADAR-TYDALVLGACRAGRVEEAFVLLRRMVDDGQSV----LYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 201 ~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
..-+.|+-. ....++..+.+ +.+++..+.+.+....+.+ -..+|..++....+.++...|.+.+..+...
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 444556533 23344444444 5666666666554433222 2467888999999999999999888776553
No 284
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.27 E-value=1.1 Score=29.94 Aligned_cols=43 Identities=12% Similarity=-0.008 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHH
Q 038109 54 VRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARL 96 (324)
Q Consensus 54 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 96 (324)
..+-++.+....+.|++.+..+.+++|.+..++..|.++|+.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.22 E-value=4.3 Score=31.24 Aligned_cols=222 Identities=18% Similarity=0.047 Sum_probs=149.5
Q ss_pred CCCHHHHHHHHHHHHhcCCC-CCchhhHhhhhchhhhhhHHHHHHHHHHHhc--CC-CCHHHHHHHHHHHHccCCHHHHH
Q 038109 48 ERDLETVRYLLNKRARDCCF-NTANTFNFITNTENSLSVLSDLCRTLARLDK--GF-PRKSAYDTLIGRLCKLKKIDEAL 123 (324)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-p~~~~~~~li~~~~~~~~~~~a~ 123 (324)
.+....+...+......... ............+...+.+..+...+..... .. .....+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666554221 1245666777777888888888888777754 23 34557777778888888889999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHH-HHHccCcHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038109 124 RVVDIMAEGGFGLSAITFHPILS-VLTRGKRMEEAWGLMEVMKEIRV--SPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200 (324)
Q Consensus 124 ~~~~~m~~~g~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 200 (324)
+.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9998888754433 122222333 67888999999999998855321 1234444455555777889999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 201 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
..........+..+...+...++.+.+...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76332246777888888888889999999998887643 33 334444444444677788888888777664
No 286
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.05 E-value=2.3 Score=28.45 Aligned_cols=44 Identities=14% Similarity=-0.026 Sum_probs=20.9
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q 038109 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 227 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (324)
..+-+..+....+.|++....+.+++|-+.+++..|.++++..+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555443
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.95 E-value=0.33 Score=25.12 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 038109 207 DARTYDALVLGACRAGRVEEAF 228 (324)
Q Consensus 207 ~~~~~~~li~~~~~~g~~~~a~ 228 (324)
+...|+.+...|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555555555555555553
No 288
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.78 E-value=6.4 Score=35.47 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=46.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 038109 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 194 (324)
+.|+++.|.++..+.. +..-|..|-++..+.+++..|.+.|..... |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4455555555543332 334455555555555666555555554432 2334444445555554444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLR 232 (324)
Q Consensus 195 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 232 (324)
+-....+.|.. |.-..+|...|+++++.+++.
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44444444432 122233445555555555543
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.62 E-value=0.21 Score=25.90 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=16.9
Q ss_pred cCCC-CHHHHHHHHHHHHccCCHHHHH
Q 038109 98 KGFP-RKSAYDTLIGRLCKLKKIDEAL 123 (324)
Q Consensus 98 ~~~p-~~~~~~~li~~~~~~~~~~~a~ 123 (324)
+..| +..+|+.+...|...|++++|+
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3345 4557777777777777777664
No 290
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.55 E-value=6 Score=31.55 Aligned_cols=185 Identities=10% Similarity=0.060 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCc---hhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH--HHH
Q 038109 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA---NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS--AYD 107 (324)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~ 107 (324)
|-...|+.-+. -.+.|++++|.+.|+.+... .+-++ .+--.++-++-+.++++.|...+++..+.+|+.. .|.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 33445665554 56889999999999999865 23333 4555667788899999999999999988776433 566
Q ss_pred HHHHHHHcc-------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038109 108 TLIGRLCKL-------KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180 (324)
Q Consensus 108 ~li~~~~~~-------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 180 (324)
..|.+++.. +|...+.+.+..+.+ ++.-|=.+.=...|..-...+... =...=..+.
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~Ia 174 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIA 174 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHH
Confidence 666665532 233333333333221 111111111112222222211110 001112456
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGAD---ARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
+.|.+.|.+..|..-+++|.+. ..-+ ....-.+..+|...|-.++|.+.-+-+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 7788888888888888888876 2212 23455566778888888888777665554
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.45 E-value=11 Score=34.43 Aligned_cols=185 Identities=12% Similarity=-0.010 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHH--HH-HHccCcHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC-
Q 038109 119 IDEALRVVDIMAEGGFGLSAITFHPIL--SV-LTRGKRMEEAWGLMEVMKE-------IRVSPDLTAYNYLLTAYCFKG- 187 (324)
Q Consensus 119 ~~~a~~~~~~m~~~g~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~~- 187 (324)
...|...++...+.|.. .......++ .+ ++...+.+.|..+++...+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45566666666665532 111111111 12 3355667777777776655 33 2223444555555532
Q ss_pred ----ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH--hcCCHH
Q 038109 188 ----NLTATSGVLKKMEEEKLGADARTYDALVLGACR-AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL--RLGYYA 260 (324)
Q Consensus 188 ----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~ 260 (324)
+.+.|..++....+.|.. +....-..+.-... ..+...|.++|...-+.|..+ ...+.+++-... ...+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHH
Confidence 445577777666666543 33333222222222 234567777777766666522 222111111111 223566
Q ss_pred HHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCch
Q 038109 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKM 311 (324)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 311 (324)
.|..++....+.| .|...--...+..+.. ++++.+.-.+..+.+.|...
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH
Confidence 6777776666665 2222222222333333 55666655555555554443
No 292
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.43 E-value=1.7 Score=28.76 Aligned_cols=48 Identities=15% Similarity=-0.026 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q 038109 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 223 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (324)
+.-++.+-++.+......|++....+.+++|-+.+++..|.++++..+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555556666666677777777777777777777777777776655
No 293
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.40 E-value=4.1 Score=29.42 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=35.2
Q ss_pred HhhhhchhhhhhHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038109 74 NFITNTENSLSVLSDLCRTLARLDKGF-------PRKSAYDTLIGRLCKLKK-IDEALRVVDIMAEGGFGLSAITFHPIL 145 (324)
Q Consensus 74 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li 145 (324)
+.+++-....+++....++++.+.... .+...|++++.+..+... ---+..+|+-|.+.+.+++..-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444555555555555442211 122244555555544433 233344444444444444555555555
Q ss_pred HHHHcc
Q 038109 146 SVLTRG 151 (324)
Q Consensus 146 ~~~~~~ 151 (324)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 544443
No 294
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.01 E-value=2.5 Score=36.81 Aligned_cols=128 Identities=9% Similarity=0.029 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRAR-DCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLC 114 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~li~~~~ 114 (324)
.-..-|.--...|++..|-+-+...++ ....|+... .........|.++.+...+....+.. ....+-..+++...
T Consensus 291 ~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 291 EITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH 368 (831)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh
Confidence 344445555667777766555444443 333344333 33445578899999988888776655 34557888899999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC
Q 038109 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 167 (324)
+.|+++.|..+-.-|....+. +..+........-..|-++++...|+++...
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred chhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 999999999998888876555 4444444444455567788888888887654
No 295
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.93 E-value=11 Score=33.42 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=108.3
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 038109 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215 (324)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 215 (324)
.|....-+++..++.+....-++.+-.+|...| .+...|-.++.+|... ..++-..+|+++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355556677788888888888888888888765 4667788888888877 667777888888877665 555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCc------CHHHHHHHHHHHHhcCCHHHHHHHHHHhCC-CCCCcCHhHHHHHHHHH
Q 038109 216 LGACRAGRVEEAFVLLRRMVDDGQSV------LYSTYAHVMGALLRLGYYAQAVKFVMVCGG-RDIKLDTELFGSLGSKL 288 (324)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 288 (324)
.-|-+ ++.+.+..+|.+....=+ | -...|.-+.... ..+.+....+...+.. .|...-...+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI-~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFI-PRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55555 777788888877664321 2 122344444321 3566777776666544 34444556666677778
Q ss_pred hCcCCHHHHHHHHHHHHhC
Q 038109 289 IGLERFNEANFILKEMNKR 307 (324)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (324)
....++++|++++..+.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 8888888888888865543
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.89 E-value=3.5 Score=37.04 Aligned_cols=133 Identities=16% Similarity=0.135 Sum_probs=96.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
..+.+++-+.+.|-.++|+++- +|..- -.....+.|+++.|.++..+. .+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 5667777788888888887652 23221 134455779999988877654 25667999999999
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 264 (324)
+.+++..|.+.|....+ |..|+-.+...|+.+....+-....+.|. .|...-++...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 99999999998876543 66778888888888877777776666664 3444566778899999999
Q ss_pred HHHHhC
Q 038109 265 FVMVCG 270 (324)
Q Consensus 265 ~~~~~~ 270 (324)
++..-.
T Consensus 743 lLi~t~ 748 (794)
T KOG0276|consen 743 LLISTQ 748 (794)
T ss_pred HHHhcC
Confidence 876543
No 297
>PRK11906 transcriptional regulator; Provisional
Probab=90.78 E-value=4.6 Score=35.17 Aligned_cols=81 Identities=7% Similarity=-0.129 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 038109 85 VLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163 (324)
Q Consensus 85 ~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 163 (324)
...+|.++.+...+..| |..+...+..+..-.++++.|..+|++...-+.. ...+|...-..+.-.|+.++|.+.+++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444333 3334444444444445555555555555542211 122233333333344555555555555
Q ss_pred HHh
Q 038109 164 MKE 166 (324)
Q Consensus 164 m~~ 166 (324)
..+
T Consensus 398 alr 400 (458)
T PRK11906 398 SLQ 400 (458)
T ss_pred Hhc
Confidence 433
No 298
>PRK11906 transcriptional regulator; Provisional
Probab=90.28 E-value=12 Score=32.78 Aligned_cols=114 Identities=13% Similarity=0.044 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHh---cCCCCH-HHHHHHHHHHHc---------cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 038109 85 VLSDLCRTLARLD---KGFPRK-SAYDTLIGRLCK---------LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151 (324)
Q Consensus 85 ~~~~a~~~~~~~~---~~~p~~-~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 151 (324)
..+.|..+|.+.. ...|+- ..|..+..++.. ..+..+|.++-++..+.+.. |......+.....-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 3556666677665 444532 233333222211 12334444555555544332 444444444444555
Q ss_pred CcHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSPD-LTAYNYLLTAYCFKGNLTATSGVLKKMEE 201 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 201 (324)
++.+.|...|++....+ || ..+|......+.-+|+.++|.+.+++..+
T Consensus 352 ~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55666666666555543 22 22333333333445566666665555443
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.02 E-value=1.1 Score=24.00 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 209 RTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 209 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455666666666666666666666554
No 300
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.87 E-value=4 Score=31.68 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=29.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 165 (324)
-++.+.+.+++.+|+...++-++.... |...-..+++.++-.|++++|..-++-.-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344555555555555555555444222 44445555556666666666555444433
No 301
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.83 E-value=17 Score=33.83 Aligned_cols=135 Identities=8% Similarity=-0.029 Sum_probs=60.9
Q ss_pred CCCCCCCHHHHH-----HHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhh---HHHHHHHHHHHhcC
Q 038109 28 AFPDEPTSAYYD-----DLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV---LSDLCRTLARLDKG 99 (324)
Q Consensus 28 ~~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 99 (324)
..|+..|..-|. .+|+-+...+.+..|.++-..+-..-..- ...|......+.+..+ -+.+..+-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 445555555443 34555566667777777755553221111 3444444444444321 12222222222221
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHccCcHHHHHHHHHH
Q 038109 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG----LSAITFHPILSVLTRGKRMEEAWGLMEV 163 (324)
Q Consensus 100 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~ 163 (324)
.-...+|..+.+-....|+.+.|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllh 571 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLH 571 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHH
Confidence 123335666666666667776666665432221110 1222334444444555555444444433
No 302
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.67 E-value=0.18 Score=36.54 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=27.9
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 038109 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLK 197 (324)
Q Consensus 144 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 197 (324)
+++.+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344455555555555555555554444445555555555555555555555544
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.58 E-value=0.81 Score=24.51 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 279 ELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467777788888888888888887764
No 304
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.50 E-value=4.3 Score=35.47 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=43.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHH
Q 038109 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297 (324)
Q Consensus 218 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 297 (324)
+...|+++.+...+...... +.....+..++++...+.|+++.|...-..|....+. ++.......-..-..|-+|++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 34556666666555444321 2223345555666666666666666666655555444 333332222223334555666
Q ss_pred HHHHHHHH
Q 038109 298 NFILKEMN 305 (324)
Q Consensus 298 ~~~~~~m~ 305 (324)
.-.|+++.
T Consensus 411 ~~~wk~~~ 418 (831)
T PRK15180 411 YHYWKRVL 418 (831)
T ss_pred HHHHHHHh
Confidence 66555553
No 305
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.41 E-value=0.14 Score=37.00 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=46.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038109 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 258 (324)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ... ...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~yd-----~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--NYD-----LDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--SS------CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--ccC-----HHHHHHHHHhcch
Confidence 455556666667777777776665544456666777777777766666666665111 111 1224455555555
Q ss_pred HHHHHHHHHHh
Q 038109 259 YAQAVKFVMVC 269 (324)
Q Consensus 259 ~~~a~~~~~~~ 269 (324)
+++|.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555433
No 306
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.84 E-value=4.7 Score=31.34 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=51.8
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 038109 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK--LGADARTYDALVLG 217 (324)
Q Consensus 140 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~ 217 (324)
|.+..++.+.+.+.+.+++...++-.+.. +.|..+-..+++.+|-.|+|++|..-++-.-... ..+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677778888888888877766653 2356666778888888888888887766554432 22345666666654
No 307
>PRK09687 putative lyase; Provisional
Probab=88.77 E-value=12 Score=30.73 Aligned_cols=121 Identities=7% Similarity=-0.089 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 038109 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG-RVEEAFVLLRRMVDDGQSVLYSTYAHVM 250 (324)
Q Consensus 172 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li 250 (324)
+..+-...+.++++.++ +.+...+-.+.+. +|...-...+.++.+.+ +.+.+...+..+... ++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 44444455555555554 2344444444332 34344444444444432 123444444444432 3444444555
Q ss_pred HHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 251 GALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.++.+.|+. .|...+-...+.+ + .....+.++...|.. +|...+.++.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555555553 3333333333322 1 123455556556653 45555555554
No 308
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.73 E-value=11 Score=30.06 Aligned_cols=206 Identities=14% Similarity=0.071 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038109 36 AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCK 115 (324)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~ 115 (324)
..|.....+|...+++++|...+.+..+. ..-+...| .....++.|.-+..++.+..--...|+.....|..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45777777788889999999887776542 22222222 22333444545555554332223356666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHHhcCChh
Q 038109 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI---R--VSPDLTAYNYLLTAYCFKGNLT 190 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~li~~~~~~~~~~ 190 (324)
+|..+.|-..+++.-+. ..+.++++|++++++.... + ...-...+..+-+.+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 78777776666654431 1223445555555543221 1 0111233444555666666676
Q ss_pred hHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCHHHH
Q 038109 191 ATSGVLKKMEEE----KLGAD-ARTYDALVLGACRAGRVEEAFVLLRRMVDDG---QSVLYSTYAHVMGALLRLGYYAQA 262 (324)
Q Consensus 191 ~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a 262 (324)
+|-..|.+-... .--++ -..|...|-.+....++..|.+.++.-.+-+ -.-+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 665555432211 01112 2346666777777788888888888754332 123456677777775 45777777
Q ss_pred HHHH
Q 038109 263 VKFV 266 (324)
Q Consensus 263 ~~~~ 266 (324)
..++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 6654
No 309
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.49 E-value=8.4 Score=31.19 Aligned_cols=87 Identities=11% Similarity=0.125 Sum_probs=45.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF---- 185 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---- 185 (324)
|.+++..++|.+++...-+--+.--+....+...-|-.|.+.+.+..+.++-....+.--.-+...|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666677777766665544433221122233344444566666666666666655544222233345555555443
Q ss_pred -cCChhhHHHHH
Q 038109 186 -KGNLTATSGVL 196 (324)
Q Consensus 186 -~~~~~~a~~~~ 196 (324)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666555
No 310
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=16 Score=31.41 Aligned_cols=88 Identities=9% Similarity=-0.035 Sum_probs=47.4
Q ss_pred HHccCcHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 038109 148 LTRGKRMEEAWGLMEVMKEIR---VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224 (324)
Q Consensus 148 ~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 224 (324)
..+.|.+..|.+.+.+.+... ..|+...|-.......+.|+.++|+.--++..+.+.. -...|..-..++.-.++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHH
Confidence 345666677777776665542 3445555655556666667777666665555443111 112222223344445666
Q ss_pred HHHHHHHHHHHH
Q 038109 225 EEAFVLLRRMVD 236 (324)
Q Consensus 225 ~~a~~~~~~m~~ 236 (324)
++|.+-|+...+
T Consensus 338 e~AV~d~~~a~q 349 (486)
T KOG0550|consen 338 EEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHh
Confidence 666666665544
No 311
>PHA02875 ankyrin repeat protein; Provisional
Probab=87.79 E-value=15 Score=32.12 Aligned_cols=13 Identities=0% Similarity=-0.059 Sum_probs=5.7
Q ss_pred HHHccCCHHHHHH
Q 038109 112 RLCKLKKIDEALR 124 (324)
Q Consensus 112 ~~~~~~~~~~a~~ 124 (324)
..+..|+.+.+..
T Consensus 74 ~A~~~g~~~~v~~ 86 (413)
T PHA02875 74 DAVEEGDVKAVEE 86 (413)
T ss_pred HHHHCCCHHHHHH
Confidence 3344455544333
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.78 E-value=9.1 Score=29.41 Aligned_cols=81 Identities=16% Similarity=0.031 Sum_probs=57.2
Q ss_pred HHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcC
Q 038109 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE---EKLGADARTYDALVLGACRAG 222 (324)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g 222 (324)
-.+.+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+ .+-.+|+..+.+|++.+.+.|
T Consensus 115 y~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 115 YHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 34555565 567778888877775556666555555555 6678888888776654 344678888889999998888
Q ss_pred CHHHHH
Q 038109 223 RVEEAF 228 (324)
Q Consensus 223 ~~~~a~ 228 (324)
+.+.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 888875
No 313
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.70 E-value=1 Score=24.98 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=23.7
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHHhCCCch
Q 038109 283 SLGSKLIGLERFNEANFILKEMNKRDLKM 311 (324)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 311 (324)
.+..+|...|+.+.|.++++++...|-.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 46788999999999999999998665443
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.53 E-value=1.5 Score=22.25 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 279 ELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4567777888888888888888887664
No 315
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.48 E-value=2.4 Score=21.50 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 210 TYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 210 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666665553
No 316
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=87.34 E-value=16 Score=30.54 Aligned_cols=144 Identities=12% Similarity=0.022 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 154 MEEAWGLMEVMKEIRV----SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229 (324)
Q Consensus 154 ~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 229 (324)
...|.+.|+.....+. ..+......++....+.|+.+.-..+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677788888776422 345566667777777888876666666665544 477888889999999999999899
Q ss_pred HHHHHHHCC-CCcCHHHHHHHHHHHHhcCCH--HHHHHHH----HHhCCCCCCcCHhHHHHHHHHHhC----cCCHHHHH
Q 038109 230 LLRRMVDDG-QSVLYSTYAHVMGALLRLGYY--AQAVKFV----MVCGGRDIKLDTELFGSLGSKLIG----LERFNEAN 298 (324)
Q Consensus 230 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 298 (324)
+++.....+ +++.. . ..++.++...+.. +.++.++ +.+.+. +..+......++..+.. ....++..
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 999888754 54433 3 3355555534433 6676665 334332 22222245556665443 34444444
Q ss_pred HHHHH
Q 038109 299 FILKE 303 (324)
Q Consensus 299 ~~~~~ 303 (324)
+.|+.
T Consensus 300 ~f~~~ 304 (324)
T PF11838_consen 300 EFFED 304 (324)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55543
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.23 E-value=9.4 Score=27.73 Aligned_cols=49 Identities=20% Similarity=0.130 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038109 83 LSVLSDLCRTLARLDKGFPRK---SAYDTLIGRLCKLKKIDEALRVVDIMAEGG 133 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 133 (324)
.++.+++..+++.+.-..|+. .++..+ .+...|++++|.++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 444555555555554333322 233332 2345566666666666665543
No 318
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.22 E-value=18 Score=30.98 Aligned_cols=253 Identities=13% Similarity=0.075 Sum_probs=117.9
Q ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhch--hhhhhHHHHHHHHHHHhcCCCCHH--HHHHHHH
Q 038109 38 YDDLVNAAG--HERDLETVRYLLNKRARDCCFNTANTFNFITNTE--NSLSVLSDLCRTLARLDKGFPRKS--AYDTLIG 111 (324)
Q Consensus 38 ~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~--~~~~li~ 111 (324)
|..|-.++. -.|+-..|.++-.+-.+. +..|....-.++.+- .-.|+.+.|.+-|+.|.+- |... -...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHH
Confidence 444444333 244555555554433221 233333333333322 2346777777777766432 2211 2233333
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHh---
Q 038109 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR-VSPDLTA--YNYLLTAYCF--- 185 (324)
Q Consensus 112 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~--~~~li~~~~~--- 185 (324)
.--+.|+.+.|.+.-++.-..-.. -...+...+...+..|+++.|+++.+.-+... +.+++.- -..|+.+-..
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 344566666666666655543221 24556666777777777777777777654433 3333321 1122222111
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH-
Q 038109 186 KGNLTATSGVLKKMEEEKLGADAR-TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV- 263 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~- 263 (324)
..+...|...-.+..+ +.||-. .-..-..++.+.|+..++-.+++.+-+....| ... .+....+.|+.....
T Consensus 242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia--~lY~~ar~gdta~dRl 315 (531)
T COG3898 242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIA--LLYVRARSGDTALDRL 315 (531)
T ss_pred cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHH--HHHHHhcCCCcHHHHH
Confidence 1233344433333322 344422 22333466777777777777777776554333 332 223344555432211
Q ss_pred HHHHHhCCCCCCc-CHhHHHHHHHHHhCcCCHHHHHHHH
Q 038109 264 KFVMVCGGRDIKL-DTELFGSLGSKLIGLERFNEANFIL 301 (324)
Q Consensus 264 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (324)
+-...+.. .+| +......+.++-...|++..|..--
T Consensus 316 kRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 316 KRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred HHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 00111111 122 3444445566666666666555433
No 319
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.15 E-value=15 Score=30.01 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=87.5
Q ss_pred cCcHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-ChhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038109 151 GKRMEEAWGLMEVMKE-IRVSPDLTAYNYLLTAYCF-KG-NLTATSGVLKKMEE-EKLGADARTYDALVLGACRAGRVEE 226 (324)
Q Consensus 151 ~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~ 226 (324)
+....+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345566666663322 2244566666667766555 22 22223333343332 3456778888888899999999999
Q ss_pred HHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHh-----CCCCCCcCHhHHHHHHHHH
Q 038109 227 AFVLLRRMVDD-GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC-----GGRDIKLDTELFGSLGSKL 288 (324)
Q Consensus 227 a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 288 (324)
-+++++..... +..-|..-|..+|......|+..-..+++.+- .+.++..+...-..+-+.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 88888877655 55567778888999999999988877776543 4455665665555544444
No 320
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.89 E-value=5.1 Score=32.60 Aligned_cols=207 Identities=14% Similarity=0.014 Sum_probs=128.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc------C-----cHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG------K-----RMEEAWGLMEVMKEIRVSPDLTAYNY 178 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~------~-----~~~~a~~~~~~m~~~~~~~~~~~~~~ 178 (324)
++-..+-=..++-.+..++..+.-.+....++...+.+++.. | ...+|.++|.-+..+.-+ .++-+-
T Consensus 94 ~dYl~KPvt~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~ 171 (361)
T COG3947 94 DDYLPKPVTPEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWE 171 (361)
T ss_pred HhhccCCCCHHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhH
Confidence 333333334455555555555433333455666666666521 1 246788888877765432 234445
Q ss_pred HHHHHHhcCChhhHHHHHHH-------HHH-------------------CCCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 038109 179 LLTAYCFKGNLTATSGVLKK-------MEE-------------------EKLGADARTYDALVLGACR-AGRVEEAFVLL 231 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~-------m~~-------------------~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~ 231 (324)
++.++....+..+|...+.. +.. .++..|..-|-..+..... +..++++-++.
T Consensus 172 ~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv 251 (361)
T COG3947 172 AIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELV 251 (361)
T ss_pred HHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHH
Confidence 66666666666666555432 221 1234466666666655443 23466666666
Q ss_pred HHHHHCCCCc-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCH
Q 038109 232 RRMVDDGQSV-----------------LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294 (324)
Q Consensus 232 ~~m~~~~~~p-----------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 294 (324)
..... +.-| -..+++.....|...|.+.+|..+.+...... +.+...+-.++..+...|+-
T Consensus 252 ~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 252 GQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred HHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccc
Confidence 65532 1111 12335556678999999999999999998875 56888899999999999998
Q ss_pred HHHHHHHHHHH-----hCCCchhHHHHHHHh
Q 038109 295 NEANFILKEMN-----KRDLKMGFKLRDYYE 320 (324)
Q Consensus 295 ~~a~~~~~~m~-----~~~~~~~~~~~~~~~ 320 (324)
-.+.+-++++. +.|+..+.++..-|.
T Consensus 330 is~~khyerya~vleaelgi~vddsieewy~ 360 (361)
T COG3947 330 ISAIKHYERYAEVLEAELGIDVDDSIEEWYK 360 (361)
T ss_pred hhhhhHHHHHHHHHHHHhCCCcchhHHHHhh
Confidence 88887777763 458888888776664
No 321
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.73 E-value=9.9 Score=27.52 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHH
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKL-----GADARTYDALVLGACRAGR-VEEAFVLLRRMVDDGQSVLYSTYAHV 249 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l 249 (324)
.|+++.-....+++.....+++.+..... ..+..+|.+++.+.++..- ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555555555555555555432110 1234455555555544443 23345555555555555555556666
Q ss_pred HHHHHhc
Q 038109 250 MGALLRL 256 (324)
Q Consensus 250 i~~~~~~ 256 (324)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6555443
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.36 E-value=1.9 Score=21.73 Aligned_cols=27 Identities=19% Similarity=0.189 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 280 LFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.+..+...+.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455677777788888888888877654
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.22 E-value=0.84 Score=22.90 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=10.9
Q ss_pred hchhhhhhHHHHHHHHHHHhcCCC
Q 038109 78 NTENSLSVLSDLCRTLARLDKGFP 101 (324)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~~~~~~p 101 (324)
.++.+.|+.++|.+.|+++.+.+|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 334444444455444444444433
No 324
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.98 E-value=12 Score=30.43 Aligned_cols=88 Identities=13% Similarity=0.107 Sum_probs=52.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-----H
Q 038109 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA-----L 253 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-----~ 253 (324)
=|.++...++|.++....-.--..--+........-|-.|.+.+++..+.++-..-.+..-.-+...|..++.. +
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 46778888888887765543332211223444555566678888888888877776654211222235555444 4
Q ss_pred HhcCCHHHHHHHH
Q 038109 254 LRLGYYAQAVKFV 266 (324)
Q Consensus 254 ~~~g~~~~a~~~~ 266 (324)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 4568888888776
No 325
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=85.94 E-value=5 Score=27.51 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=10.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 038109 214 LVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 214 li~~~~~~g~~~~a~~~~~~m 234 (324)
++..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444555555555555443
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.52 E-value=1.2 Score=21.27 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=10.2
Q ss_pred HHHHHHhCcCCHHHHHHHHH
Q 038109 283 SLGSKLIGLERFNEANFILK 302 (324)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~ 302 (324)
.+...+...|+.++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 327
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.94 E-value=15 Score=28.05 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=65.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHH-----HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPI-----LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 183 (324)
+...+...+++++|+..++..... |....+..+ .......|..++|+.+++.....+.. ......-.+.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 457788888999998888877653 233333333 34566778889999888888776543 33345566788
Q ss_pred HhcCChhhHHHHHHHHHHCCC
Q 038109 184 CFKGNLTATSGVLKKMEEEKL 204 (324)
Q Consensus 184 ~~~~~~~~a~~~~~~m~~~~~ 204 (324)
...|+-++|..-|+.....+.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHcCchHHHHHHHHHHHHccC
Confidence 888999999998888887753
No 328
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=84.74 E-value=18 Score=28.68 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=30.9
Q ss_pred HhcCCHHHHHHHHHHHHHC-C-----------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcC
Q 038109 219 CRAGRVEEAFVLLRRMVDD-G-----------QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD 277 (324)
Q Consensus 219 ~~~g~~~~a~~~~~~m~~~-~-----------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (324)
...|+..+|+.-++.-... | -.|.+.....++..|.. +++++|.+.+.++-+.|+.|.
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 3456666666555544321 1 13555555555555443 456666666666666666543
No 329
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.73 E-value=1 Score=22.80 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=12.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAE 131 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~ 131 (324)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444455555555555555555443
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.72 E-value=2.6 Score=21.30 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 280 LFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777788888888888876543
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.67 E-value=3.6 Score=22.79 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=9.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 038109 215 VLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 215 i~~~~~~g~~~~a~~~~~~m~ 235 (324)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 332
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.56 E-value=18 Score=28.60 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=16.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC
Q 038109 218 ACRAGRVEEAFVLLRRMVDDGQ 239 (324)
Q Consensus 218 ~~~~g~~~~a~~~~~~m~~~~~ 239 (324)
-+..+++.+|+++|++.....+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566888999999998876544
No 333
>PRK09687 putative lyase; Provisional
Probab=84.40 E-value=21 Score=29.28 Aligned_cols=235 Identities=12% Similarity=0.007 Sum_probs=148.8
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhH----HHHHHHHHHHhcCCCCHHHHH
Q 038109 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL----SDLCRTLARLDKGFPRKSAYD 107 (324)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~p~~~~~~ 107 (324)
.+|.......+.++...|..+ +...+..+.. .+|+..=...+.++...|+. .++...+..+....|+..+-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 456666666777777777543 3333444443 24555445556666666653 456677766644557777777
Q ss_pred HHHHHHHccCCH-----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038109 108 TLIGRLCKLKKI-----DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182 (324)
Q Consensus 108 ~li~~~~~~~~~-----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 182 (324)
..+.+++..+.. ..+...+...... ++..+-...+.++++.++. .+...+-.+.+. +|..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 777777666432 2344444444333 4667777888888888874 455666666553 455666667777
Q ss_pred HHhcC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038109 183 YCFKG-NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261 (324)
Q Consensus 183 ~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 261 (324)
+++.+ +...+...+..+... ++..+-...+.++.+.|+ ..+...+-...+.+. .....+.++...|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-h
Confidence 77653 244666666666643 588888888999999998 456666666655433 234678888999986 6
Q ss_pred HHHHHHHhCCCCCCcCHhHHHHHHHHHh
Q 038109 262 AVKFVMVCGGRDIKLDTELFGSLGSKLI 289 (324)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 289 (324)
|...+..+.+. .||..+-...+.++.
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888777764 247766666666554
No 334
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.12 E-value=9.4 Score=26.79 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 226 EAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 226 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
+..+-+..+....+.|++......+++|-+.+++..|.++++.++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555555556677788888888888888888888888888776553
No 335
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.03 E-value=30 Score=30.71 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=31.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEGGFG-LSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
+..++-+.|+.++|.+.+++|.+.... -...+...|+.++...+.+.++..++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 444555556666666666666543211 1233455566666666666666666665543
No 336
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.50 E-value=38 Score=31.48 Aligned_cols=194 Identities=15% Similarity=0.056 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCC--hhhHHHHHHHHH-ccCcHHHHHHHHHHHHhCCCCCCHH---
Q 038109 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAE-GGFGLS--AITFHPILSVLT-RGKRMEEAWGLMEVMKEIRVSPDLT--- 174 (324)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~~~--~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~--- 174 (324)
+...|..||.. |++.++-+.+ ..++|. ..++--+...+. ...+.+.|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 34467777744 5666666663 333333 334444555544 6678888888888654432222211
Q ss_pred --HHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCcCHH
Q 038109 175 --AYNYLLTAYCFKGNLTATSGVLKKMEEE----KLGADARTYDAL-VLGACRAGRVEEAFVLLRRMVDDG---QSVLYS 244 (324)
Q Consensus 175 --~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~ 244 (324)
....++..+.+.+... |....++..+. +..+-...+..+ +..+...++...|.+.++.+.... ..|...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234566666666655 88877765543 122223333333 333333478888998888776542 335555
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHhCCC---------CCCcCHhHHHHHHHHHh--CcCCHHHHHHHHHHHH
Q 038109 245 TYAHVMGALL--RLGYYAQAVKFVMVCGGR---------DIKLDTELFGSLGSKLI--GLERFNEANFILKEMN 305 (324)
Q Consensus 245 ~~~~li~~~~--~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~ 305 (324)
++..++.+.. +.+..+.+.+.++.+... .-.|-..+|..+++.++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666544 344455565555544211 12345667777766554 5677777777766654
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.71 E-value=4.6 Score=20.30 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 210 TYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 210 ~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
+|..+...|...|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555666666666666665544
No 338
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.13 E-value=30 Score=29.37 Aligned_cols=201 Identities=9% Similarity=-0.022 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHH----HHhCC-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC-CCCC---CHH
Q 038109 104 SAYDTLIGRLCKLKKIDEALRVVDI----MAEGG-FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI-RVSP---DLT 174 (324)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~ 174 (324)
.+|..+..+.++.|.+++++..--. ..+.. -..--..|..+-.++-+.-++.+++.+-+.-... |..| .-.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3677888888888888887654321 11110 0001234555555555555566666555443322 2222 112
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcCHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEE-----KLGADARTYDALVLGACRAGRVEEAFVLLRRMVD----DGQSVLYST 245 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~ 245 (324)
...++-.++...+.++++++.|+...+. +......+|..|-..|.+..++++|.-+..+..+ .++.--..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 3345667788888899999999876543 1222346788899999999999998877665432 233222222
Q ss_pred HH-----HHHHHHHhcCCHHHHHHHHHHhC----CCCCC-cCHhHHHHHHHHHhCcCCHHHHHHHHHHH
Q 038109 246 YA-----HVMGALLRLGYYAQAVKFVMVCG----GRDIK-LDTELFGSLGSKLIGLERFNEANFILKEM 304 (324)
Q Consensus 246 ~~-----~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (324)
|. .+.-++-..|+...|.+.-++.. ..|-. ........+.+.|...|+.+.|+.-+++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33 23345566777766666655443 33322 12344556778888899999888777653
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.06 E-value=44 Score=31.13 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhh
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 83 (324)
.|. +|-.|.+.|+++.|.++....... +......+...+..+...
T Consensus 114 ~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 354 555788999999999998555443 455556666667766554
No 340
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=81.81 E-value=15 Score=25.76 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 156 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
+..+-+..+...++.|+......-+++|-+.+++..|.++|+..+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555666666677777777777777777777777777777776654
No 341
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.41 E-value=24 Score=27.66 Aligned_cols=186 Identities=17% Similarity=0.127 Sum_probs=104.1
Q ss_pred hchhhhhhHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHH
Q 038109 78 NTENSLSVLSDLCRTLARLDKGFPRK-SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEE 156 (324)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 156 (324)
..|-..|.+.-|.--|.+.....|+. .+||-+.--+...|+++.|.+.|+...+-...-+-...|.-|. +.-.|++.-
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 34556677777777777777777864 4889988888999999999999998887543322222222222 334578888
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038109 157 AWGLMEVMKEIR-VSPDLTAYNYLLTAYCFKGNLTATSGVL-KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 157 a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 234 (324)
|.+-+...-+.+ -.|=...|-.++. ..-++.+|..-+ ++... .|..-|..-|-.|.- |++.+ ..++++.
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS~-e~l~~~~ 222 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKISE-ETLMERL 222 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhccH-HHHHHHH
Confidence 877666554443 2232233333322 234555555433 33332 254555554443322 12111 1233333
Q ss_pred HHCCC------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC
Q 038109 235 VDDGQ------SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 235 ~~~~~------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (324)
....- ..-..||--+.+-+...|+.++|..+|+-....+
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 22110 0113566677777888888888888887765543
No 342
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.99 E-value=28 Score=28.48 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=85.9
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHhcCChhhHHHHHHH----HHHCCCCCCHHHH
Q 038109 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY-------NYLLTAYCFKGNLTATSGVLKK----MEEEKLGADARTY 211 (324)
Q Consensus 143 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~li~~~~~~~~~~~a~~~~~~----m~~~~~~~~~~~~ 211 (324)
-+.+-..+.+++++|...+.++...|+..+..+. ..+...|...|++..-.+.... |.+..-.......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 3455667788889999999988888887776554 3456667777777665555443 2222222233445
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHH----HHhCCCCCCcCHhHH
Q 038109 212 DALVLGACRA-GRVEEAFVLLRRMVDDGQSVL-----YSTYAHVMGALLRLGYYAQAVKFV----MVCGGRDIKLDTELF 281 (324)
Q Consensus 212 ~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~ 281 (324)
.++|.-+... ..++..+++.....+...+-. ...=.-++..+.+.|.+.+|..++ .++.+..-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 5555554433 345555555555543322211 111234566667777777777655 333344444444333
Q ss_pred HHH-HHHHhCcCCHHHHHHHHH
Q 038109 282 GSL-GSKLIGLERFNEANFILK 302 (324)
Q Consensus 282 ~~l-~~~~~~~g~~~~a~~~~~ 302 (324)
..+ -..|....++.++..-+.
T Consensus 168 hllESKvyh~irnv~KskaSLT 189 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLT 189 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHH
Confidence 222 234444444444444443
No 343
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.74 E-value=10 Score=31.78 Aligned_cols=53 Identities=8% Similarity=-0.054 Sum_probs=31.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGA-DARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
.-|.+.|.+++|...|..-... .| +.+++..-..+|.+...+..|+.=.....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4566677777777776654443 23 56666666666776666665555444433
No 344
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=80.70 E-value=25 Score=27.52 Aligned_cols=218 Identities=10% Similarity=0.002 Sum_probs=116.6
Q ss_pred CccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHH--HHhcCCCHHHHHHHHHHHHhcCCCCC-chhhHhhhhchhhhhhH
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVN--AAGHERDLETVRYLLNKRARDCCFNT-ANTFNFITNTENSLSVL 86 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~ 86 (324)
.+++.+-+.+.+.-+-....+.+++...--..=+ .|-..|-+..|+-=|.+.+. +.|+ +..||.+.--+...|++
T Consensus 38 qp~lqqEV~iarlsqlL~~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~f 115 (297)
T COG4785 38 QPTLQQEVILARMSQILASRALTDEERAQLLFERGVLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNF 115 (297)
T ss_pred CccHHHHHHHHHHHHHHHhccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccc
Confidence 3445555555444444445556665432111111 13344556666666666555 3444 47888888888889999
Q ss_pred HHHHHHHHHHhcCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCcHHHHHHH-HH
Q 038109 87 SDLCRTLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFG-LSAITFHPILSVLTRGKRMEEAWGL-ME 162 (324)
Q Consensus 87 ~~a~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~-~~ 162 (324)
+.|.+.|+...+..|.-. ..|.-| ++.-.|++..|.+=|...-+.... |-...|--+.. +.-++.+|..- .+
T Consensus 116 daa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~q 191 (297)
T COG4785 116 DAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQ 191 (297)
T ss_pred hHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHH
Confidence 999999998887776422 233333 333467888888877777665332 22222222222 33345555443 33
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG------ADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 163 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
+..+. |..-|...|-.|. .|+.. ...+++++....-. .=..||--+..-+...|+.++|..+|+-...
T Consensus 192 R~~~~----d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 192 RAEKS----DKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHhc----cHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33332 3333333222221 11111 11222333221110 1135788888888899999999999987776
Q ss_pred CCC
Q 038109 237 DGQ 239 (324)
Q Consensus 237 ~~~ 239 (324)
..+
T Consensus 266 nnV 268 (297)
T COG4785 266 NNV 268 (297)
T ss_pred HhH
Confidence 543
No 345
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.57 E-value=21 Score=25.97 Aligned_cols=51 Identities=12% Similarity=0.003 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHHhCC
Q 038109 116 LKKIDEALRVVDIMAEGGFG-LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 168 (324)
.++.+++..+++.|.--... +...++... .+...|++++|.++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 45555555555555432111 122222222 2334555555555555555543
No 346
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.10 E-value=28 Score=30.35 Aligned_cols=206 Identities=12% Similarity=0.020 Sum_probs=103.1
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHccCcHH
Q 038109 80 ENSLSVLSDLCRTLARLDKGFPRKS--AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAI--TFHPILSVLTRGKRME 155 (324)
Q Consensus 80 ~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~~~~~ 155 (324)
.+..|+.+-+..+++. ...|+.. ...+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+
T Consensus 9 A~~~g~~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 9 AILFGELDIARRLLDI--GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HHHhCCHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 3556777766666542 2224332 1234455566777775 445555667655532 1223455666778887
Q ss_pred HHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHH
Q 038109 156 EAWGLMEVMKEIRVSP----DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART--YDALVLGACRAGRVEEAFV 229 (324)
Q Consensus 156 ~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~ 229 (324)
.+..+++ .|... +..-.+ .+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..
T Consensus 83 ~v~~Ll~----~~~~~~~~~~~~g~t-pL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 83 AVEELLD----LGKFADDVFYKDGMT-PLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHHH----cCCcccccccCCCCC-HHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 6655554 33221 111223 334445566654 4555566676665322 1234455567777665444
Q ss_pred HHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhH---HHHHHHHHhCcCCHHHHHHHHHH
Q 038109 230 LLRRMVDDGQSVL---YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL---FGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 230 ~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
++ +.|..++ ..-.+. +...+..|+.+-+..++ +.|..|+... ..+.+...+..|+.+ +.+-
T Consensus 154 Ll----~~g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~Ll----~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~ 220 (413)
T PHA02875 154 LI----DHKACLDIEDCCGCTP-LIIAMAKGDIAICKMLL----DSGANIDYFGKNGCVAALCYAIENNKID----IVRL 220 (413)
T ss_pred HH----hcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----hCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHH
Confidence 44 4454332 222233 33445667776555544 3444443221 123444344556654 4444
Q ss_pred HHhCCCchhH
Q 038109 304 MNKRDLKMGF 313 (324)
Q Consensus 304 m~~~~~~~~~ 313 (324)
+.+.|..++.
T Consensus 221 Ll~~gad~n~ 230 (413)
T PHA02875 221 FIKRGADCNI 230 (413)
T ss_pred HHHCCcCcch
Confidence 5667777753
No 347
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=78.93 E-value=15 Score=23.87 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHH
Q 038109 222 GRVEEAFVLLRRMV 235 (324)
Q Consensus 222 g~~~~a~~~~~~m~ 235 (324)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.71 E-value=6.7 Score=24.90 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=9.4
Q ss_pred HHHHHHHHHHccCCHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALR 124 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~ 124 (324)
++..++.+|+..|++.++++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444443
No 349
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=77.01 E-value=10 Score=21.37 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038109 116 LKKIDEALRVVDIMAEGGFGLSAITFHPIL 145 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 145 (324)
.|-.+++..++++|.+.|+..+...|..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344444444444444444444444444333
No 350
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.25 E-value=75 Score=30.51 Aligned_cols=223 Identities=13% Similarity=0.020 Sum_probs=116.6
Q ss_pred hhhhhHHHHHHHHHHHhcCCC------CHH---HHHHHH-HHHHccCCHHHHHHHHHHHHhC----CCCCChhhHHHHHH
Q 038109 81 NSLSVLSDLCRTLARLDKGFP------RKS---AYDTLI-GRLCKLKKIDEALRVVDIMAEG----GFGLSAITFHPILS 146 (324)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~p------~~~---~~~~li-~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~li~ 146 (324)
...+++++|..+..++....| ... .|+.+- ......|++++|+++-+...+. -..+....++.+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456778888888887754331 111 455543 3345568888888888776653 12234566667777
Q ss_pred HHHccCcHHHHHHHHHHHHhCCCCCCHHHHH---HH--HHHHHhcCCh--hhHHHHHHHHHHC--CCC----CCHHHHHH
Q 038109 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN---YL--LTAYCFKGNL--TATSGVLKKMEEE--KLG----ADARTYDA 213 (324)
Q Consensus 147 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~l--i~~~~~~~~~--~~a~~~~~~m~~~--~~~----~~~~~~~~ 213 (324)
+..-.|++++|..+..+..+..-.-++..+. .+ ...+...|+. .+....|...... +-+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7778899999988887765542222333332 22 2234556633 2333333332221 001 12344555
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHhCCC----CCCcCHhHHHHHHH
Q 038109 214 LVLGACRA-GRVEEAFVLLRRMVDDGQSVLYSTYA--HVMGALLRLGYYAQAVKFVMVCGGR----DIKLDTELFGSLGS 286 (324)
Q Consensus 214 li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 286 (324)
+..++.+. +...++..-+.--......|-..... .|+......|+.++|...++++... +..++-..-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555552 11122222222222222223222222 5677788899999998888766443 22333333222333
Q ss_pred H--HhCcCCHHHHHHHHHH
Q 038109 287 K--LIGLERFNEANFILKE 303 (324)
Q Consensus 287 ~--~~~~g~~~~a~~~~~~ 303 (324)
. ....|+..++...+.+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2356777777766655
No 351
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=76.11 E-value=42 Score=31.10 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=54.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHCCCCcCHHHHHHH
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEE--KLGADARTYDALVLGACRAGRVEE------AFVLLRRMVDDGQSVLYSTYAHV 249 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~~~~p~~~~~~~l 249 (324)
++..+|...|++-.+.++++..... |-+.-...||..|+...+.|.++- |.++++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7899999999999999999887753 334446778888999999987652 33333333 355677888888
Q ss_pred HHHHHh
Q 038109 250 MGALLR 255 (324)
Q Consensus 250 i~~~~~ 255 (324)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776544
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.00 E-value=34 Score=26.46 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=22.3
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
.++.+.+.++.|..--.+..+.++. .......-..+|.+...+++|++=|+.+.+
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444444444444444333333322 122222223344444445555554444443
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.88 E-value=32 Score=26.03 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=13.2
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCC
Q 038109 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168 (324)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 168 (324)
.|+..+|+.-+.... +|-++..++.+.+
T Consensus 110 ~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 110 DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp -TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 455566665555442 3444555554444
No 354
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=75.75 E-value=14 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=19.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAE 131 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~ 131 (324)
|..++..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777777777777777777777766
No 355
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.46 E-value=21 Score=27.27 Aligned_cols=32 Identities=19% Similarity=0.068 Sum_probs=16.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 240 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
.|+..+|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555555555555555555555555544443
No 356
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.45 E-value=31 Score=26.69 Aligned_cols=91 Identities=11% Similarity=0.073 Sum_probs=61.8
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHh
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGAD----ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY-STYAHVMGALLR 255 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~ 255 (324)
.-+.+.|++++|..-|......-+... ...|..-..++.+.+.++.|+.-..+..+.+ |+. .....-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 456788999999999988887633222 2345555567788888888888777766543 321 122222346778
Q ss_pred cCCHHHHHHHHHHhCCCC
Q 038109 256 LGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~ 273 (324)
...++.|+.=|..+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 888889988888887764
No 357
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=74.97 E-value=25 Score=29.53 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038109 86 LSDLCRTLARLDKGFPRKS----AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149 (324)
Q Consensus 86 ~~~a~~~~~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 149 (324)
.+++..+++.+....|+.. -|-+++......|.+++++.+|++.+..|..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566677777777778665 578888999999999999999999999998887776666666644
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.92 E-value=14 Score=22.22 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 246 YAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
...+|.++.+.|++++|.+++..+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333445555555555555444433
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.83 E-value=15 Score=28.17 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=22.6
Q ss_pred CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC
Q 038109 134 FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167 (324)
Q Consensus 134 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 167 (324)
..|+..+|..++..+...|+.++|.+...++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3466666777777777777777777666666653
No 360
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.75 E-value=6.8 Score=23.57 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=14.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 038109 108 TLIGRLCKLKKIDEALRVVDIMAE 131 (324)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~m~~ 131 (324)
.+|.+|...|++++|.+.++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356666666666666666666543
No 361
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.68 E-value=47 Score=27.38 Aligned_cols=71 Identities=20% Similarity=0.176 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhC-----CCCCCcCHhHH
Q 038109 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG-----GRDIKLDTELF 281 (324)
Q Consensus 210 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~ 281 (324)
+++.....|..+|.+.+|.++.++..+.. +.+...+-.+++.+...|+--.|.+-++.+. +.|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34555566777777777777777766543 2455666667777777777555555444432 23555554443
No 362
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.64 E-value=13 Score=20.96 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHH
Q 038109 222 GRVEEAFVLLRRMVDDGQSVLYSTYA 247 (324)
Q Consensus 222 g~~~~a~~~~~~m~~~~~~p~~~~~~ 247 (324)
|-.+++..++++|.+.|+..+...+.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHH
Confidence 33334444444444444433333333
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.41 E-value=11 Score=23.92 Aligned_cols=53 Identities=4% Similarity=0.024 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCC-c-hhhHhhhhchhhhhhHHHHHHHH
Q 038109 40 DLVNAAGHERDLETVRYLLNKRARDCCFNT-A-NTFNFITNTENSLSVLSDLCRTL 93 (324)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~ 93 (324)
.-+..| ..++.++|+..|...++.-..+. . .++..++.+|+..|++.++.++-
T Consensus 12 ~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 12 KGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544 77788999999999887533222 2 46778889999999999887763
No 364
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=73.25 E-value=4.2 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=23.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038109 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 148 (324)
..|.-.+|..+|.+|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345567788899999999988875 56666543
No 365
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.79 E-value=23 Score=23.03 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHH
Q 038109 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298 (324)
Q Consensus 227 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 298 (324)
+.+++..+.+.|+ .+..-...+-.+-...|+.+.|.+++..+. +|. .-|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhhh
Confidence 4566777777775 333333333333335688889999998888 653 36778888888887766554
No 366
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=71.79 E-value=29 Score=25.20 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=18.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038109 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 222 (324)
++......++.-.|.++++.+.+.++..+..|.-.-+..+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444444444444444444444444333333344444433
No 367
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.30 E-value=17 Score=30.53 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=19.9
Q ss_pred HHccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHH
Q 038109 148 LTRGKRMEEAWGLMEVMKEIRVSP-DLTAYNYLLTAYCFKGNLTATS 193 (324)
Q Consensus 148 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~ 193 (324)
|.+.|.+++|...|..-... .| |.+++..-..+|.+...+..|.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHH
Confidence 44445555555555443332 22 4444444444555444444433
No 368
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=70.71 E-value=38 Score=24.61 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=20.3
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC
Q 038109 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD 172 (324)
Q Consensus 127 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 172 (324)
+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 3444445444332 23334444444444555555555555443333
No 369
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=70.70 E-value=31 Score=23.56 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHhCCCCC
Q 038109 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVMVCGGRDI 274 (324)
Q Consensus 211 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~ 274 (324)
...++..|...++.++|.+-+.++..... .......++..+...+ .-+.+..++..+.+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 34566777888888888888887753322 2233344555444443 23344455566655443
No 370
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.27 E-value=23 Score=26.71 Aligned_cols=93 Identities=9% Similarity=0.095 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CCCCCc-hhhHhhhhchhhhhh-----------HHHHHHHHHHHhcC
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRARD-----CCFNTA-NTFNFITNTENSLSV-----------LSDLCRTLARLDKG 99 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~ 99 (324)
-|...+.-+++.....++.+++++.... .+.|+- .++..+.+++...+. ++.|...|++....
T Consensus 30 ~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 30 NWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 3666676676666655665555554432 255665 677777777765544 45566666666666
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 038109 100 FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG 135 (324)
Q Consensus 100 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 135 (324)
.|+...|+.-+.... +|-++..++.+.+..
T Consensus 110 ~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 110 DPNNELYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp -TT-HHHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred CCCcHHHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 799999998887763 466777777666543
No 371
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=70.22 E-value=19 Score=23.27 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=29.3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCc
Q 038109 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291 (324)
Q Consensus 241 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (324)
|.+.....++..+.. ++++++...+..+...|+.++ .....+...+.+.
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSAS-DILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHh
Confidence 445555666666555 588888888877777776643 3445566666555
No 372
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.92 E-value=5.4 Score=28.26 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=10.4
Q ss_pred CChhhHHHHHHHHHHCCCCCC
Q 038109 187 GNLTATSGVLKKMEEEKLGAD 207 (324)
Q Consensus 187 ~~~~~a~~~~~~m~~~~~~~~ 207 (324)
|.-.+|..+|++|.+.|-.||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 334445555555555555444
No 373
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.86 E-value=8.5 Score=18.07 Aligned_cols=23 Identities=30% Similarity=0.231 Sum_probs=10.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 038109 108 TLIGRLCKLKKIDEALRVVDIMA 130 (324)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~m~ 130 (324)
.+...+...++++.|...+++..
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444444444433
No 374
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=69.67 E-value=1e+02 Score=29.16 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=25.7
Q ss_pred hhHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 190 TATSGVLKKM-EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 190 ~~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
++....+... .+.|+..+......++... .|+...++.+++++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 3444444433 3446666666666655443 4777777777766553
No 375
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=67.50 E-value=14 Score=30.29 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038109 212 DALVLGACRAGRVEEAFVLLRRMVDDGQS 240 (324)
Q Consensus 212 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 240 (324)
+..|....+.||+++|+.++++..+.|..
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34555555555555555555555554443
No 376
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=66.76 E-value=11 Score=30.86 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=35.5
Q ss_pred CCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHh
Q 038109 30 PDEPTSA-YYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNF 75 (324)
Q Consensus 30 ~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 75 (324)
.+.|+.. -|+..|....+.||+++|+.++++.++.|+.--..+|-.
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3445554 477999999999999999999999999987554455533
No 377
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.44 E-value=1.1e+02 Score=28.49 Aligned_cols=41 Identities=22% Similarity=0.179 Sum_probs=19.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 151 (324)
|--|.++|++++|.++..+..+. .......+...+..|...
T Consensus 118 Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 118 IYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 44555666666666665333322 333334445555555443
No 378
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.35 E-value=71 Score=26.05 Aligned_cols=200 Identities=10% Similarity=0.024 Sum_probs=103.2
Q ss_pred CCCCCCHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhcCCCCCch---hhHhhhhchhhhhhHHHHHHHHHHHhcC-----
Q 038109 29 FPDEPTSAYYDDLVNAA-GHERDLETVRYLLNKRARDCCFNTAN---TFNFITNTENSLSVLSDLCRTLARLDKG----- 99 (324)
Q Consensus 29 ~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 99 (324)
.+-.||+..=|..-..- .+..++++|+.-|.+.++..-..... ....++..+.+.+++++....+.++..-
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34556665444333222 23446777777777776532222222 3344567777777777777777666321
Q ss_pred --CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CC-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCC---
Q 038109 100 --FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAE----GG-FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV--- 169 (324)
Q Consensus 100 --~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--- 169 (324)
.-+..+.|++++--..+.+.+...+.|+.-.+ .. -..=-.|-.-+-..|...+.+.+..++++++.+.--
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 12333566666655555555544444433221 10 000012334455666666777777777777654311
Q ss_pred -CC-------CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHH
Q 038109 170 -SP-------DLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGA-----CRAGRVEEAFV 229 (324)
Q Consensus 170 -~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~-----~~~g~~~~a~~ 229 (324)
.. -...|..=|.+|....+-.+...+|+....- ..-|.+..... |+-| .+.|++++|-.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHh
Confidence 11 1345666677777776666666666654432 22344444332 3333 35567776643
No 379
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=66.18 E-value=1.3e+02 Score=28.97 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=23.3
Q ss_pred hhHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 190 TATSGVLKKME-EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 190 ~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
++..+.++... ..|+..+......++. ...|+...|+.++++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 34444444433 3455555555544443 23577777777766644
No 380
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=64.94 E-value=57 Score=24.44 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=18.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038109 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222 (324)
Q Consensus 180 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 222 (324)
+......++.-.|.++++.+.+.+..++..|..--+..+.+.|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3333333444445555555554444444443333344444433
No 381
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.92 E-value=40 Score=22.72 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038109 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRR 233 (324)
Q Consensus 154 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 233 (324)
.++|..+-+.+...+-. ...+--+-++.+...|++++|..+.+.+ +.||...|-+|-. .+.|-.+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34555444444443311 2222223334455555666655554443 2455555554432 244444444444444
Q ss_pred HHHCC
Q 038109 234 MVDDG 238 (324)
Q Consensus 234 m~~~~ 238 (324)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 44443
No 382
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.70 E-value=60 Score=24.69 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=11.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 038109 216 LGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~m~~ 236 (324)
..|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 445555555555555555543
No 383
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=64.38 E-value=47 Score=27.56 Aligned_cols=70 Identities=10% Similarity=0.008 Sum_probs=43.1
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCc----------CCHHHH
Q 038109 228 FVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL----------ERFNEA 297 (324)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a 297 (324)
.++++.|.+.++.|.-..|.-+.-.+.+.=.+..+..+|+.+... +.-|..|+..||.. |++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 456667777777777777666555566666777777777776553 22355555555542 555555
Q ss_pred HHHHH
Q 038109 298 NFILK 302 (324)
Q Consensus 298 ~~~~~ 302 (324)
+++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55554
No 384
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.20 E-value=1.3e+02 Score=28.51 Aligned_cols=151 Identities=12% Similarity=0.028 Sum_probs=84.3
Q ss_pred hhchhhhhhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCc
Q 038109 77 TNTENSLSVLSDLCRTLARLDKGFPR---KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153 (324)
Q Consensus 77 ~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 153 (324)
++.+.+.+.+++|..+.+...+..|. ...+...|..+.-.|++++|-...-.|... +..-|...+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 44567778888888887776655553 337888899999999999998888777654 44445555555555544
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhH---HHHHHHH-----------H---HCCCCCCHHHHHHHHH
Q 038109 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT---SGVLKKM-----------E---EEKLGADARTYDALVL 216 (324)
Q Consensus 154 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a---~~~~~~m-----------~---~~~~~~~~~~~~~li~ 216 (324)
...... -+.......+...|..++-.+.. .+...= .+.|..+ . +..-. +...-..|+.
T Consensus 439 l~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVLAH 513 (846)
T ss_pred cchhhc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHHHH
Confidence 432221 11111111234556555555554 111111 1111000 0 00011 2223334778
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 038109 217 GACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 217 ~~~~~g~~~~a~~~~~~m~~ 236 (324)
-|...++++.|++++-..++
T Consensus 514 LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHccChHHHHHHHHhccC
Confidence 88888999999888876653
No 385
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=64.18 E-value=29 Score=20.87 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=14.7
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038109 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 147 (324)
+.|++=+|.++++.+-.....+....+..+|+.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 345555555555555543222333444444443
No 386
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.89 E-value=75 Score=25.46 Aligned_cols=118 Identities=12% Similarity=-0.019 Sum_probs=73.2
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCCchh-hHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCHHHH
Q 038109 45 AGHERDLETVRYLLNKRARDCCFNTANT-FNFITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEA 122 (324)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a 122 (324)
|.....++.|...|.+.+. +.|+..+ |+.-+-++.+..+++.+..--....+..|+.+ .---+..++.....++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 3445567777776655554 4566643 45556667777888877776666666667665 444556677778888888
Q ss_pred HHHHHHHHh----CCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 038109 123 LRVVDIMAE----GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164 (324)
Q Consensus 123 ~~~~~~m~~----~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 164 (324)
+..+.+... ..+++-......|..+=-+.-...+..++.+..
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888887743 334444555566655544444455555555543
No 387
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=62.97 E-value=1.6e+02 Score=29.11 Aligned_cols=27 Identities=30% Similarity=0.552 Sum_probs=16.4
Q ss_pred HHHHHHHHHccC--cHHHHHHHHHHHHhC
Q 038109 141 FHPILSVLTRGK--RMEEAWGLMEVMKEI 167 (324)
Q Consensus 141 ~~~li~~~~~~~--~~~~a~~~~~~m~~~ 167 (324)
+..++.+|++.+ ++++|+....++++.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 345556666665 666666666666654
No 388
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=62.76 E-value=68 Score=24.64 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=52.1
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC--------------
Q 038109 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG-------------- 205 (324)
Q Consensus 140 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------- 205 (324)
.|.....+-++.-+.+++.+.+- ..+--+++..|.+.-+|.+..++++.|.+..+.
T Consensus 109 PFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~a 178 (233)
T PF14669_consen 109 PFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLA 178 (233)
T ss_pred CHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccC
Confidence 35556666666555555443321 112234677788888899999999888765332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 206 ADARTYDALVLGACRAGRVEEAFVLLR 232 (324)
Q Consensus 206 ~~~~~~~~li~~~~~~g~~~~a~~~~~ 232 (324)
+--...|.....+.++|.+|.|+.+++
T Consensus 179 srCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 179 SRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred chhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 223456666677777777777777776
No 389
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.71 E-value=44 Score=22.41 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHH
Q 038109 54 VRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAY 106 (324)
Q Consensus 54 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 106 (324)
..+.+++....+...-+-....|.-.|++.|+.+.+.+-|+.=+..+|...+|
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 33444444444433333334455556666677777766666666666655544
No 390
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=62.40 E-value=60 Score=26.97 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=54.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH----------hcCCHHHH
Q 038109 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL----------RLGYYAQA 262 (324)
Q Consensus 193 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----------~~g~~~~a 262 (324)
.++|+.|.+.++.|.-.++..+...+.+.=.+.+++.+|+.+.....+ |..|+..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 567888999999999999999888899999999999999999865332 666666665 34666666
Q ss_pred HHHHH
Q 038109 263 VKFVM 267 (324)
Q Consensus 263 ~~~~~ 267 (324)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66554
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.21 E-value=48 Score=22.66 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 246 YAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
|..|+.-|...|..++|.+++.....
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666665554
No 392
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=61.54 E-value=47 Score=22.61 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=9.5
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 038109 109 LIGRLCKLKKIDEALRVVDIM 129 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m 129 (324)
++..|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555554443
No 393
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.44 E-value=1e+02 Score=26.11 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=39.9
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhC---CCCCCHHHH--HHHHHHHHhcCChhhHHHHHHHHHH-----CCCCCCHH
Q 038109 143 PILSVLTRGKRMEEAWGLMEVMKEI---RVSPDLTAY--NYLLTAYCFKGNLTATSGVLKKMEE-----EKLGADAR 209 (324)
Q Consensus 143 ~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~ 209 (324)
.++...-+.++.++|.++++++.+. --.|+.+.| +.+.+++...|+..++.+.+++..+ .|++|+++
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3344444556777777777776543 123455554 3445556667777777777777665 46665443
No 394
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.36 E-value=9 Score=22.23 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=13.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 249 VMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
+.-++.+.|+++.|.+..+.+.+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 334556666666666666666553
No 395
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=61.09 E-value=1.2e+02 Score=26.84 Aligned_cols=60 Identities=10% Similarity=-0.119 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHh
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLD 97 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 97 (324)
...+|+-|...|+..+..+.++++-.....|-..-+-.-+..-.+...-+.|-.++..+.
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~ 407 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLH 407 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhh
Confidence 466777888888887777777654332222222112122222233444455555555553
No 396
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=60.89 E-value=14 Score=33.82 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=17.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 165 (324)
-.-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.+.|+...+..+-+.+.
T Consensus 408 ~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 408 AEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445555555555555444433211 12234444444555555544444444333
No 397
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.61 E-value=49 Score=22.31 Aligned_cols=57 Identities=16% Similarity=0.007 Sum_probs=26.5
Q ss_pred HHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHH
Q 038109 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFK 314 (324)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 314 (324)
.+...|++++|..+.+.. ..||...|-.|-. .+.|--+.+..-+.+|..+|-.-...
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~p~lq~ 104 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASGDPRLQT 104 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCCHHHHH
Confidence 345555555555543332 2455555433322 23444455555555555544443333
No 398
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=60.57 E-value=1.4e+02 Score=27.38 Aligned_cols=94 Identities=10% Similarity=0.011 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhch-hhhhhHHHHHHHHHHHhcC----CCCHHHHHHHHHH
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVLSDLCRTLARLDKG----FPRKSAYDTLIGR 112 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~----~p~~~~~~~li~~ 112 (324)
|......=.+.|..+.+.++|++-... ++-+...|...+..+ ...|+.+...+.|+..... +-+...|...|.-
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 344444445667777888888777653 566666665554433 3456677777777776432 2455577777777
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 038109 113 LCKLKKIDEALRVVDIMAEG 132 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~m~~~ 132 (324)
-..++++.....++++..+.
T Consensus 161 en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccccHHHHHHHHHHHHhh
Confidence 77888888888888887764
No 399
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.36 E-value=84 Score=24.89 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=56.9
Q ss_pred hhhhchh--hhhhHHHHHHHHHHHhcCCCCH-HHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 038109 75 FITNTEN--SLSVLSDLCRTLARLDKGFPRK-SAY-DTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150 (324)
Q Consensus 75 ~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~-~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 150 (324)
..+.++. ..+++++|.+.+.. |+. ..+ ..++.++...|+.+.|+.+++.+..... +......++.. ..
T Consensus 81 ~~~~g~W~LD~~~~~~A~~~L~~-----ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La 152 (226)
T PF13934_consen 81 KFIQGFWLLDHGDFEEALELLSH-----PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHhChHhHHHHHHHhCC-----CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HH
Confidence 4455543 34667777666532 222 122 2477777778999999998877543322 22233333444 55
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 151 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
++.+.+|..+-+...+.. ....+..++..+.
T Consensus 153 ~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred cCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 688888887766655421 1345555666655
No 400
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.97 E-value=1.4e+02 Score=27.42 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=91.0
Q ss_pred HhcCCCHHHHHHHHHHHHh-------cCCCCCchhhHhhhhchhhh----h-hHHHHHHHHHHHhc-CCCCHHHHHHHHH
Q 038109 45 AGHERDLETVRYLLNKRAR-------DCCFNTANTFNFITNTENSL----S-VLSDLCRTLARLDK-GFPRKSAYDTLIG 111 (324)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~----~-~~~~a~~~~~~~~~-~~p~~~~~~~li~ 111 (324)
.+..++++.|...++...+ .| .+....-+..+|.+. . +.+.|..++..... +.|+....-..+.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLY 335 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 4467788889888888866 44 223344555555543 2 56678887777644 3455543333332
Q ss_pred HHHc-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038109 112 RLCK-LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT--RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN 188 (324)
Q Consensus 112 ~~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 188 (324)
.... ..+...|.++|...-+.|..+ ..-+..++...+ -..+...|..++++..+.| .|....-...+..+.. +.
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 2222 356788888888888887642 222222222222 3346788888888888887 3332222333344444 77
Q ss_pred hhhHHHHHHHHHHCCCC
Q 038109 189 LTATSGVLKKMEEEKLG 205 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~~ 205 (324)
++.+.-.+..+...|..
T Consensus 413 ~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYE 429 (552)
T ss_pred ccHHHHHHHHHHHhhhh
Confidence 77777777777666554
No 401
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.60 E-value=2.7e+02 Score=30.53 Aligned_cols=150 Identities=11% Similarity=0.098 Sum_probs=94.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHH----HhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038109 108 TLIGRLCKLKKIDEALRVVDIM----AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183 (324)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~m----~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 183 (324)
++..+-.+++.+.+|.-.++.- .+.. ....-|..+...|+..+++|....+...-.. .|+ .+. -|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHH
Confidence 5556777888899999888873 2211 1234455555689999999999888775222 122 233 44456
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHhcCCHHHH
Q 038109 184 CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST-YAHVMGALLRLGYYAQA 262 (324)
Q Consensus 184 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a 262 (324)
...|++..|..-|+.+...+.. ...+++-++......|.++...-..+-..... .+.... ++.=+.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 7789999999999999887543 46677777777777777777766544443321 122222 22223344566777776
Q ss_pred HHHHH
Q 038109 263 VKFVM 267 (324)
Q Consensus 263 ~~~~~ 267 (324)
+....
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66554
No 402
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=59.01 E-value=40 Score=23.08 Aligned_cols=16 Identities=0% Similarity=0.140 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHCCC
Q 038109 189 LTATSGVLKKMEEEKL 204 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~ 204 (324)
.-.|.++++.+.+.+.
T Consensus 16 ~~sa~ei~~~l~~~~~ 31 (116)
T cd07153 16 HLTAEEIYERLRKKGP 31 (116)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 3334444444443333
No 403
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=58.89 E-value=47 Score=21.56 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhc
Q 038109 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDK 98 (324)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 98 (324)
|+...|..-++....... +++ ++|+-....|+..|+..|..++....-.-..+...++++.+..
T Consensus 8 ~~~~~~k~~~~rk~~Ls~-eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSA-EEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred ChHHHHHHHHHHHhccCH-HHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 445556655544333332 222 6777777788888888888888877666667777777776643
No 404
>PRK09857 putative transposase; Provisional
Probab=58.87 E-value=82 Score=26.13 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchh
Q 038109 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMG 312 (324)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 312 (324)
+..++....+.++.++..++++.+.+. .........++.+-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344555545556665555555555443 222333444566666666766777788888888887754
No 405
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.63 E-value=69 Score=25.71 Aligned_cols=58 Identities=14% Similarity=-0.044 Sum_probs=38.1
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 038109 142 HPILSVLTRGKRMEEAWGLMEVMKE----IR-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199 (324)
Q Consensus 142 ~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 199 (324)
-.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--+|
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455667777888888887777642 22 3445666677777777788877776665444
No 406
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=57.56 E-value=64 Score=29.51 Aligned_cols=84 Identities=12% Similarity=-0.003 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHH
Q 038109 83 LSVLSDLCRTLARLDKGFP--RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 160 (324)
.|+...|.+.+.......| ..+..-.|.....+.|..-+|..++.+...-. ...+-++-.+.+++....+.++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 4555555555444433223 11233334444444555555555555444432 12333444445555555555555555
Q ss_pred HHHHHhC
Q 038109 161 MEVMKEI 167 (324)
Q Consensus 161 ~~~m~~~ 167 (324)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 5554443
No 407
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.25 E-value=85 Score=23.95 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 154 MEEAWGLMEVMKEIRVSPDL-------TAYNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 154 ~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
++.|+.+|+.+.+.--.|.. ..--..+-.|.+.|.+++|.+++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 45566666665554322211 11123345677888888888888777663
No 408
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=57.09 E-value=37 Score=23.51 Aligned_cols=45 Identities=11% Similarity=-0.037 Sum_probs=21.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 222 (324)
.++......+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445555555555555555555444433444444433
No 409
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=56.51 E-value=38 Score=20.66 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
++.++..+++-.-.++++..+.+..+.
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~ 37 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQR 37 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333333333333333333
No 410
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.22 E-value=3.2e+02 Score=30.03 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
..+|....+..-..|+++.|...+-...+.+ . +..+--....+-..|+...|+.++++..+.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4667777777778999999988776666654 2 3445567788888999999999999887543
No 411
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=55.15 E-value=78 Score=23.70 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=45.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038109 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260 (324)
Q Consensus 198 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 260 (324)
.+...|+.++.. -..++..+...++.-.|.++++.+.+.+..++..|.-.-+..+.+.|-+.
T Consensus 16 ~L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 16 LCAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 355667774433 34556666666777889999999999887778777777788888888554
No 412
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.09 E-value=1.2e+02 Score=25.06 Aligned_cols=135 Identities=12% Similarity=0.109 Sum_probs=87.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHccCcHHHHHHHHHH----HHhCCCCCCHHHHH
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSA-------ITFHPILSVLTRGKRMEEAWGLMEV----MKEIRVSPDLTAYN 177 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~ 177 (324)
+.+-..+.+++++|+..+.+....|+..+. .+...+...|.+.|+...--+.... |.+-.-+..+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 456677889999999999999999987664 4555677888888888766655543 22222222445566
Q ss_pred HHHHHHHhc-CChhhHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 038109 178 YLLTAYCFK-GNLTATSGVLKKMEEEKLGAD-----ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243 (324)
Q Consensus 178 ~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 243 (324)
+++..+... +.++....+.....+--..-. ...=.-+|..+.+.|.+.+|+.+...+...=-+.|.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD 160 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD 160 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC
Confidence 666665543 456777777776655322211 122344678888889999998888766654333333
No 413
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=54.90 E-value=1.2e+02 Score=25.17 Aligned_cols=109 Identities=12% Similarity=0.017 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 189 LTATSGVLKKMEEEKL----GADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 264 (324)
.+.|.+.|+.....+. .++......++....+.|+.+.-..+++..... ++..--..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5678888888877422 456777777888888888877666666655543 355666778999988999999999
Q ss_pred HHHHhCCCC-CCcCHhHHHHHHHHHhCcCCH--HHHHHHHH
Q 038109 265 FVMVCGGRD-IKLDTELFGSLGSKLIGLERF--NEANFILK 302 (324)
Q Consensus 265 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~ 302 (324)
+++.....+ ++ +.... .++.++...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~-~~d~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVR-SQDIR-YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS--TTTHH-HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccc-cHHHH-HHHHHHhcCChhhHHHHHHHHH
Confidence 998888854 44 33333 445555433333 56665554
No 414
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=54.85 E-value=31 Score=21.06 Aligned_cols=49 Identities=8% Similarity=-0.032 Sum_probs=25.4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhC
Q 038109 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG 290 (324)
Q Consensus 241 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 290 (324)
|....++.++..+++-.-.+.+...+....+.|. .+..+|-.-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4444555566666655555666666655555553 345555555554443
No 415
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.69 E-value=78 Score=22.78 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 207 DARTYDALVLGACRAGR---VEEAFVLLRRMVDDGQSV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 207 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
+..+--.+..++.++.+ ..+.+.++++..+...+- .....--|.-++.+.++++.+.++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 33333334444444433 334555555555421111 1122222334555666666666666555543
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.63 E-value=1.3e+02 Score=25.38 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 213 ALVLGACRAGRVEEAFVLLRRMVDDG-QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 213 ~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
.|.-+..+.|+..+|.+.|+++.+.- +..-......|+.+|....-+..+..++.+.-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444456788888888887766531 111112234566666666666665555544433
No 417
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.43 E-value=1.1e+02 Score=24.68 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----CCC-CcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 213 ALVLGACRAGRVEEAFVLLRRMVD----DGQ-SVLYSTYAHVMGALLRLGYYAQAVKFV 266 (324)
Q Consensus 213 ~li~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~ 266 (324)
.+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 355556666777777766666532 122 233444455555566666666555543
No 418
>PRK13342 recombination factor protein RarA; Reviewed
Probab=54.41 E-value=1.5e+02 Score=26.00 Aligned_cols=36 Identities=19% Similarity=0.082 Sum_probs=18.4
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038109 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 187 (324)
++.+.|..++..|.+.|..|....-..++.++...|
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 455556666666665555555444444444443333
No 419
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=54.33 E-value=50 Score=30.39 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhCCCchhHH
Q 038109 291 LERFNEANFILKEMNKRDLKMGFK 314 (324)
Q Consensus 291 ~g~~~~a~~~~~~m~~~~~~~~~~ 314 (324)
.|++.+|.+.+-.+...+..|..-
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp ------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHH
Confidence 377777777777776666666443
No 420
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=53.87 E-value=1.3e+02 Score=24.96 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=53.2
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038109 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223 (324)
Q Consensus 144 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 223 (324)
++....+.++..+..+.++.+.. ...-...+......|++..|.++..+..+. .. ....|+.+=. -..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~---L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRH---LSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHH---HhHH
Confidence 34444455555555555555432 233344556666778888887777766542 00 0001111000 0112
Q ss_pred HHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038109 224 VEEAFVLLRRMVDD-----GQSVLYSTYAHVMGALLRLGYYAQAV 263 (324)
Q Consensus 224 ~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~ 263 (324)
+++.....+.+.+. -...|+..|..++.||.-.|+...+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 23333333332221 01366777888888888777665544
No 421
>PRK09462 fur ferric uptake regulator; Provisional
Probab=53.62 E-value=84 Score=22.81 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=15.2
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038109 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222 (324)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 222 (324)
..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544444444444333334444333
No 422
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.02 E-value=1.4e+02 Score=25.16 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=14.3
Q ss_pred HHHhcCCHHHHHHHHHHhCCCCC
Q 038109 252 ALLRLGYYAQAVKFVMVCGGRDI 274 (324)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~ 274 (324)
-+.+.|..+.|..+++.+.+.++
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHc
Confidence 34466777777777766665443
No 423
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.00 E-value=1.3e+02 Score=28.24 Aligned_cols=89 Identities=4% Similarity=-0.038 Sum_probs=59.6
Q ss_pred hhhhchhhhhhHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHccCCHH------HHHHHHHHHHhCCCCCChhhHHHH
Q 038109 75 FITNTENSLSVLSDLCRTLARLDKGFP----RKSAYDTLIGRLCKLKKID------EALRVVDIMAEGGFGLSAITFHPI 144 (324)
Q Consensus 75 ~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~~~~~~~~~l 144 (324)
+|..+|...|++-.+.++++.+-.... =...||..|+...+.|.++ .|.+++++.. +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 788899999999999999888754321 2347888888888888753 3334444333 45577888888
Q ss_pred HHHHHccCcHHHHHHHHHHHHh
Q 038109 145 LSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 145 i~~~~~~~~~~~a~~~~~~m~~ 166 (324)
+++....-+-....-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776654444444455555544
No 424
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=52.33 E-value=1.8e+02 Score=26.15 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcC-Chhh
Q 038109 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY----NYLLTAYCFKG-NLTA 191 (324)
Q Consensus 117 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~li~~~~~~~-~~~~ 191 (324)
.++++|++..++..+.+-+.++. -.-.|.++|.++.+.|+.||..|= ...+..|+-.| .+++
T Consensus 208 ~~ldeal~~~~~a~~~~~~~SIg-------------~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee 274 (545)
T TIGR01228 208 DSLDEALARAEEAKAEGKPISIG-------------LLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVED 274 (545)
T ss_pred CCHHHHHHHHHHHHHcCCceEEE-------------eeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHH
Confidence 57788888888888776554432 233466788999999988876542 23344465555 4555
Q ss_pred HHHH
Q 038109 192 TSGV 195 (324)
Q Consensus 192 a~~~ 195 (324)
+.++
T Consensus 275 ~~~l 278 (545)
T TIGR01228 275 ADKL 278 (545)
T ss_pred HHHH
Confidence 5443
No 425
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.16 E-value=1.3e+02 Score=24.96 Aligned_cols=112 Identities=12% Similarity=0.041 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHh
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS-VLYSTYAHVMGALLR 255 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~ 255 (324)
-.++..+.+..+.....+.+..+. ....-...+..+...|++..|++++.+..+.--. .....+..|-.
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~---- 171 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSS---- 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhH----
Confidence 345666667777777777776665 3444556677888999999999999887653000 00111111111
Q ss_pred cCCHHHHHHHHHHhCC-----CCCCcCHhHHHHHHHHHhCcCCHHHHHHH
Q 038109 256 LGYYAQAVKFVMVCGG-----RDIKLDTELFGSLGSKLIGLERFNEANFI 300 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (324)
++.+-......+.+ .-...|+..|..+..+|.-.|+.+.+.+-
T Consensus 172 --~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 172 --QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 12222222211111 01145889999999999999987766533
No 426
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.15 E-value=2.4e+02 Score=27.63 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRAR 63 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 63 (324)
|..|+..|...|..++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66666666666667777766666654
No 427
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=52.10 E-value=1.5e+02 Score=25.23 Aligned_cols=35 Identities=14% Similarity=-0.045 Sum_probs=16.6
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHHH
Q 038109 283 SLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRD 317 (324)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 317 (324)
.+++...+.|.+++++.+|++....|..|-.++.+
T Consensus 145 C~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~ 179 (353)
T PF15297_consen 145 CLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRH 179 (353)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHH
Confidence 33444444455555555555555555555444433
No 428
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=52.10 E-value=1.1e+02 Score=24.01 Aligned_cols=81 Identities=19% Similarity=0.318 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhcC----CC-----CHHHHHHHHHHHHccC---------CHHHHHHHHHHHHhCCCC-CChhhHHHHH
Q 038109 85 VLSDLCRTLARLDKG----FP-----RKSAYDTLIGRLCKLK---------KIDEALRVVDIMAEGGFG-LSAITFHPIL 145 (324)
Q Consensus 85 ~~~~a~~~~~~~~~~----~p-----~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~g~~-~~~~~~~~li 145 (324)
..+.|..++..|... +| ...-|..+..+|.+.| +.+.-.++++...+.|++ .-+..|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 467888888887422 22 4456788888888876 445555666666666654 2234566666
Q ss_pred HHHHccCcHHHHHHHHHHHH
Q 038109 146 SVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~m~ 165 (324)
+--.-.-+++++.+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 54444445666666655543
No 429
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.05 E-value=1.7e+02 Score=25.76 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhC---CC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 038109 119 IDEALRVVDIMAEG---GF-GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG 194 (324)
Q Consensus 119 ~~~a~~~~~~m~~~---g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 194 (324)
.++...+++..... |+ ..+......++..+ .|+...+..+++.....+...+ .+...+
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~ 214 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEE 214 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHH
Confidence 35555555554322 33 44445555554433 5777777777766544311111 112222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC-----HHHHHHHH
Q 038109 195 VLKKMEEEKLGADARTYDALVLGACR---AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY-----YAQAVKFV 266 (324)
Q Consensus 195 ~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~ 266 (324)
++...... ...+...+..++.++.+ ..+.+.|+..+..|.+.|..|....-..++.++...|. ...|...+
T Consensus 215 ~~~~~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~ 293 (413)
T PRK13342 215 ALQKRAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAA 293 (413)
T ss_pred HHhhhhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 22211111 11111223334444443 47888888888888888877775555545555555543 22344445
Q ss_pred HHhCCCCCC
Q 038109 267 MVCGGRDIK 275 (324)
Q Consensus 267 ~~~~~~~~~ 275 (324)
+.....|++
T Consensus 294 ~~~~~~g~p 302 (413)
T PRK13342 294 DAVERIGMP 302 (413)
T ss_pred HHHHHhCCc
Confidence 555555543
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.67 E-value=1.5e+02 Score=25.06 Aligned_cols=20 Identities=5% Similarity=0.154 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 038109 117 KKIDEALRVVDIMAEGGFGL 136 (324)
Q Consensus 117 ~~~~~a~~~~~~m~~~g~~~ 136 (324)
++.+...+++...++.+..|
T Consensus 36 ~~~~~~e~l~~~Ird~~Map 55 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP 55 (393)
T ss_pred cCHHHHHHHHHHHHhcccch
Confidence 56666677777777766544
No 431
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=51.44 E-value=2.1e+02 Score=26.74 Aligned_cols=180 Identities=13% Similarity=0.045 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCC---CC--HHHHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCh-----hhHHHHHHHHHccCcHHH
Q 038109 88 DLCRTLARLDKGF---PR--KSAYDTLIGRLC-KLKKIDEALRVVDIMAEGGFGLSA-----ITFHPILSVLTRGKRMEE 156 (324)
Q Consensus 88 ~a~~~~~~~~~~~---p~--~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~~~~~~ 156 (324)
.|.+.++.+.+.. |. ..++-.+...+. ...+++.|+..+++.....-.++. ..-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3555555554322 32 225556666665 667899999999877543222221 22335566666766665
Q ss_pred HHHHHHHHHhC----CCCCCHHHHHHH-HHHHHhcCChhhHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCCHHH
Q 038109 157 AWGLMEVMKEI----RVSPDLTAYNYL-LTAYCFKGNLTATSGVLKKMEEEK---LGADARTYDALVLGAC--RAGRVEE 226 (324)
Q Consensus 157 a~~~~~~m~~~----~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~g~~~~ 226 (324)
|....++..+. +..+-...|.-+ +..+...+++..|.+.++.+...- ..|...++-.++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88887775543 222333344444 333333479999999988776532 2334455555555544 4565677
Q ss_pred HHHHHHHHHHCC---------CCcCHHHHHHHHHHHH--hcCCHHHHHHHHHH
Q 038109 227 AFVLLRRMVDDG---------QSVLYSTYAHVMGALL--RLGYYAQAVKFVMV 268 (324)
Q Consensus 227 a~~~~~~m~~~~---------~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~ 268 (324)
+.+.++++.... ..|...+|..+++.++ ..|+++.+...++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777664321 2345667777777544 66776666655433
No 432
>PRK09462 fur ferric uptake regulator; Provisional
Probab=50.97 E-value=93 Score=22.57 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=41.2
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcc-CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 038109 127 DIMAEGGFGLSAITFHPILSVLTRG-KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189 (324)
Q Consensus 127 ~~m~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 189 (324)
+.+.+.|+.++.. -..++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-.
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3456677776544 33445555543 45778888999998887666766666667777777754
No 433
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.74 E-value=1.7e+02 Score=25.53 Aligned_cols=62 Identities=11% Similarity=0.007 Sum_probs=29.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFG--LSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
.+.-+.+-|..+|+++.|++.|.+.++.-.. -.+..|-.+|..-.-.|+|..+.....+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3445555555566666666666554432111 1123344444444455555555555555444
No 434
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.49 E-value=1.4e+02 Score=24.45 Aligned_cols=182 Identities=7% Similarity=-0.040 Sum_probs=106.1
Q ss_pred chhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CC--CCCchhhHhhhhchhhhhhHH
Q 038109 13 IPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD---CC--FNTANTFNFITNTENSLSVLS 87 (324)
Q Consensus 13 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~l~~~~~~~~~~~ 87 (324)
...|+.-|.....+......=.-.....+|....+.+++++....+.+++.- .+ .-+....|+++..-....+.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 3455555544444442212222234667889999999999999999988642 11 223455667776666666666
Q ss_pred HHHHHHHHHhcCC---CCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-----------CChhhHHHHHHHHH
Q 038109 88 DLCRTLARLDKGF---PRKS----AYDTLIGRLCKLKKIDEALRVVDIMAEGGFG-----------LSAITFHPILSVLT 149 (324)
Q Consensus 88 ~a~~~~~~~~~~~---p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----------~~~~~~~~li~~~~ 149 (324)
....+++.-.+.. .+.. +-..|...|...+.+.+..+++.++.++--. .-...|..=|+.|.
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT 202 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYT 202 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhh
Confidence 6666655432211 1211 3356777888888888888888887653111 12356777788887
Q ss_pred ccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHH----HHHHhcCChhhHHH
Q 038109 150 RGKRMEEAWGLMEVMKEI-RVSPDLTAYNYLL----TAYCFKGNLTATSG 194 (324)
Q Consensus 150 ~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li----~~~~~~~~~~~a~~ 194 (324)
...+-.+-..++++.... .-.|.+.....+- .++.+.|++++|-.
T Consensus 203 ~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 203 EQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 777777777777764432 2234444333221 22345677776643
No 435
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=50.12 E-value=1.8e+02 Score=25.74 Aligned_cols=75 Identities=13% Similarity=-0.028 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHHHHHhh
Q 038109 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEI 321 (324)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 321 (324)
...|+.-|...|++.+|.+.++++.-- +.-...++.+++.+..+.|+-...+.++++.-..|+...+.+.+.|..
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhh
Confidence 345777788888888888888776432 223567788899999999998888889988888888887777776653
No 436
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.10 E-value=66 Score=21.12 Aligned_cols=17 Identities=6% Similarity=0.128 Sum_probs=8.0
Q ss_pred hhhhhhHHHHHHHHHHH
Q 038109 80 ENSLSVLSDLCRTLARL 96 (324)
Q Consensus 80 ~~~~~~~~~a~~~~~~~ 96 (324)
....|+.++|...+++.
T Consensus 51 ~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 34444455554444444
No 437
>PRK11619 lytic murein transglycosylase; Provisional
Probab=48.97 E-value=2.4e+02 Score=26.66 Aligned_cols=117 Identities=12% Similarity=0.039 Sum_probs=63.0
Q ss_pred cCChhhHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 038109 186 KGNLTATSGVLKKMEEEK-LGAD--ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 262 (324)
..+.+.|...+....... ..+. ...+..+.......+..+++...+....... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 334566777776653332 2111 1233344333333332445555555433221 2333344445555578888888
Q ss_pred HHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
...+..|....-.-....| -+.+++...|+.++|...|++..
T Consensus 332 ~~~i~~L~~~~~~~~rw~Y-W~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRY-WQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHH-HHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888777543222223333 46777777899999988888863
No 438
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.87 E-value=75 Score=20.86 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=13.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 038109 214 LVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 214 li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
+.......|++++|...+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556777777776666543
No 439
>PRK09857 putative transposase; Provisional
Probab=48.36 E-value=1.6e+02 Score=24.47 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=25.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 240 (324)
.++....+.++.++..++++.+.+.. .......-++..-+.+.|.-+++.++.++|...|+.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33333334444444444444444331 112222223334444444444445555555554443
No 440
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.37 E-value=99 Score=21.80 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVM 267 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 267 (324)
++.+.+.|..-... -+..-|-.+--.|++.-+ .+.++|+.|...|+--. +..|......+...|++++|.++++
T Consensus 49 Ler~~~~f~~~~~Y---~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 49 LERCIRKFKDDERY---KNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHTTSGGG---TT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhhhHhh---cCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred H
Q 038109 268 V 268 (324)
Q Consensus 268 ~ 268 (324)
.
T Consensus 124 ~ 124 (126)
T PF08311_consen 124 L 124 (126)
T ss_dssp H
T ss_pred h
No 441
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.22 E-value=2e+02 Score=25.20 Aligned_cols=24 Identities=4% Similarity=-0.003 Sum_probs=12.9
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHH
Q 038109 140 TFHPILSVLTRGKRMEEAWGLMEV 163 (324)
Q Consensus 140 ~~~~li~~~~~~~~~~~a~~~~~~ 163 (324)
.+.-+...|...|+++.|++.|.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhh
Confidence 344445555555555555555555
No 442
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.08 E-value=34 Score=16.39 Aligned_cols=13 Identities=8% Similarity=0.220 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHH
Q 038109 189 LTATSGVLKKMEE 201 (324)
Q Consensus 189 ~~~a~~~~~~m~~ 201 (324)
.+.|..+|+++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 443
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.82 E-value=1.8e+02 Score=24.61 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH----HCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCH----HH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKME----EEKLGADARTYDALVLG-ACRAGRVEEAFVLLRRMVDDGQSVLY----ST 245 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~----~~ 245 (324)
..-.....||+-|+-+.|.+.+++.. ..|.+.|+..+..-+.. |....-+.+-++..+.+.+.|...+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 44455566777777777776665443 33555565555443322 23333344444455555555544332 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhC
Q 038109 246 YAHVMGALLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~ 270 (324)
|-.+- |....++.+|-.+|-+..
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 33222 334556777766664443
No 444
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=46.45 E-value=62 Score=22.15 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038109 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260 (324)
Q Consensus 213 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 260 (324)
.++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 345556666677788999999988877778788777888888888554
No 445
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.21 E-value=3e+02 Score=27.03 Aligned_cols=187 Identities=13% Similarity=0.055 Sum_probs=104.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHccCcH--HHHHHHHHHHHhCCCCCCHHHHH--
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGG---FGLSAITFHPILSVLTRGKRM--EEAWGLMEVMKEIRVSPDLTAYN-- 177 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~-- 177 (324)
-|..|+..|...|+.++|++++.+....- -.--...+--++.-+.+.+.. +-+++.-+...+.........++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48899999999999999999999998732 111122233355555555544 55555444444332111111111
Q ss_pred ----------HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHH-----HHHH
Q 038109 178 ----------YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA--------GRVEEAFVL-----LRRM 234 (324)
Q Consensus 178 ----------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~-----~~~m 234 (324)
.-+-.|......+-+..+++.+....-.++..-.+.++.-|+.. ++-+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 12234566777888888888888766666777777777777642 112233333 1112
Q ss_pred HH--CCCCcC--------HHHHHHHHHHHHhcCCHHHHHHHHHHhCC-------------CCCCcCHhHHHHHHHHHhCc
Q 038109 235 VD--DGQSVL--------YSTYAHVMGALLRLGYYAQAVKFVMVCGG-------------RDIKLDTELFGSLGSKLIGL 291 (324)
Q Consensus 235 ~~--~~~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~ 291 (324)
.+ ....|. ..-|-...-.+.+.|+.++|+.++-.... ....++...|..+++.|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 21 122222 11222122223477888888877644333 12345777888888888765
No 446
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.50 E-value=1.4e+02 Score=23.04 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhCCCC--------------CCcCHhHHHHHHHHHhCcCCHHHHHHHHHH
Q 038109 248 HVMGALLRLGYYAQAVKFVMVCGGRD--------------IKLDTELFGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
+++-.|-+..++.++.++++.|.+.. ..+.-..-|.....+.+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 35556666667777777766653321 223345566777888888888888888873
No 447
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=44.55 E-value=1.5e+02 Score=23.01 Aligned_cols=64 Identities=13% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 243 YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
....+.++..|...|+++.|.+.|.-+.......=...|..=++.+.+.+.-....+.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 448
>PRK10941 hypothetical protein; Provisional
Probab=44.48 E-value=1.8e+02 Score=23.88 Aligned_cols=58 Identities=12% Similarity=-0.058 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
+.+-.+|.+.++++.|.++.+.+....+. +..-+.--.-.|.+.|.+..|..=++...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44444555555555555555555554333 33334433444555555555555444443
No 449
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=43.91 E-value=85 Score=24.56 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCCCC-cCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 262 AVKFVMVCGGRDIK-LDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 262 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
...+++..++.|++ .=++.|+++|+--.-.-+.++..+++..++
T Consensus 191 f~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 191 FEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 33444444444432 234566666665555556666666665543
No 450
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.81 E-value=1e+02 Score=21.09 Aligned_cols=88 Identities=10% Similarity=0.012 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267 (324)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 267 (324)
..++|..+.+-+...+.. ...+--+-+..+.+.|++++| -..-.....||...|.+|- -.+.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A----Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA----LLLPQCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH----HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH----HHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Q ss_pred HhCCCCCCcCHhHHHH
Q 038109 268 VCGGRDIKLDTELFGS 283 (324)
Q Consensus 268 ~~~~~~~~~~~~~~~~ 283 (324)
.+...| .|....|..
T Consensus 94 rla~~g-~~~~q~Fa~ 108 (116)
T PF09477_consen 94 RLASSG-SPELQAFAA 108 (116)
T ss_dssp HHCT-S-SHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHH
No 451
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.49 E-value=2.8e+02 Score=25.99 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=17.5
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 201 EEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 201 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
+.|+..+......++. ...|+...++.++++..
T Consensus 198 ~egi~ie~~AL~~La~--~s~GslR~al~lLdq~i 230 (618)
T PRK14951 198 AENVPAEPQALRLLAR--AARGSMRDALSLTDQAI 230 (618)
T ss_pred HcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 4455555555555444 23466666666655443
No 452
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=43.26 E-value=2.7e+02 Score=25.71 Aligned_cols=246 Identities=11% Similarity=0.058 Sum_probs=120.3
Q ss_pred CCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038109 68 NTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147 (324)
Q Consensus 68 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 147 (324)
+.+..|..|++. .+.-+.+...+++.++.. .+ ...+..++++....|-......+.+.+....+. +...-..+...
T Consensus 308 ~~~~~f~~lv~~-lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~~~ 383 (574)
T smart00638 308 PAAAKFLRLVRL-LRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLAVL 383 (574)
T ss_pred chHHHHHHHHHH-HHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHH
Confidence 344566666665 344456666777777654 33 568888999999999887777777666665554 33333333333
Q ss_pred HH--ccCcHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCh------hhHHHHHHHHHHCCC-CCCHHHH
Q 038109 148 LT--RGKRMEEAWGLMEVMKEIRVSPDL-------TAYNYLLTAYCFKGNL------TATSGVLKKMEEEKL-GADARTY 211 (324)
Q Consensus 148 ~~--~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~-~~~~~~~ 211 (324)
.. +.-..+-...+++-+......+.. .+|.+++.-+|..... ++....+.+...... .-|..--
T Consensus 384 ~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 463 (574)
T smart00638 384 PHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEI 463 (574)
T ss_pred HHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhe
Confidence 32 334444444444434333444443 4455555545544431 233333333222111 1133344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--CCHHHHHHHHHH-hCCCCCCcCHhHHHHHHHHH
Q 038109 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL--GYYAQAVKFVMV-CGGRDIKLDTELFGSLGSKL 288 (324)
Q Consensus 212 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~ 288 (324)
...|.++...|...... .+..........+...-...+.++-+. ...+.+..++-. ....+-.+...+ .....+
T Consensus 464 ~~~LkaLGN~g~~~~i~-~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRi--aA~~~l 540 (574)
T smart00638 464 QLYLKALGNAGHPSSIK-VLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRM--AAVLVL 540 (574)
T ss_pred eeHHHhhhccCChhHHH-HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHH--HHHHHH
Confidence 56678888888755443 344333322223334444555665533 355566554433 333333333222 223333
Q ss_pred hCc-CCHHHHHHHHHHHHhCCCchhHHHHHHHhhhc
Q 038109 289 IGL-ERFNEANFILKEMNKRDLKMGFKLRDYYEINV 323 (324)
Q Consensus 289 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~v 323 (324)
.++ -.......+.+.+ ...|+..+..+....+
T Consensus 541 m~t~P~~~~l~~ia~~l---~~E~~~QV~sfv~S~l 573 (574)
T smart00638 541 METKPSVALLQRIAELL---NKEPNLQVASFVYSHI 573 (574)
T ss_pred HhcCCCHHHHHHHHHHH---hhcCcHHHHHHhHHhh
Confidence 333 2233333333222 2345555555555444
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.05 E-value=2.1e+02 Score=25.05 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCChhhHHHHHH---
Q 038109 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD---------------LTAYNYLLTAYCFKGNLTATSGVLK--- 197 (324)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~--- 197 (324)
|+......+++.+...-+-....+.++..++.+.+.+ -.+.-.+++.++-.||+..|+++++
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred ----HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 198 ----KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 198 ----~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
.+-..-..-.+.+|--+--+|.-.+++.+|.+.|....
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 454
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=42.97 E-value=3.3e+02 Score=26.57 Aligned_cols=195 Identities=17% Similarity=0.069 Sum_probs=107.7
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHH-HHHccCcHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 038109 114 CKLKKIDEALRVVDIMAEGGFGLSAI-------TFHPILS-VLTRGKRMEEAWGLMEVMKEI----RVSPDLTAYNYLLT 181 (324)
Q Consensus 114 ~~~~~~~~a~~~~~~m~~~g~~~~~~-------~~~~li~-~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~ 181 (324)
....++++|..++.++...-..|+.. .++.+-. .....|+++++.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678999999998877543223221 2333222 223558889998887765543 23445677778888
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCH---HHHHHHH--HHHHhcCC--HHHHHHHHHHHHHC--CCC----cCHHHHHH
Q 038109 182 AYCFKGNLTATSGVLKKMEEEKLGADA---RTYDALV--LGACRAGR--VEEAFVLLRRMVDD--GQS----VLYSTYAH 248 (324)
Q Consensus 182 ~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li--~~~~~~g~--~~~a~~~~~~m~~~--~~~----p~~~~~~~ 248 (324)
+..-.|++++|..+.....+..-.-+. ..|..+. ..+...|+ ..+.+..|...... +-+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999887765543212232 3333332 33455663 23333334333221 111 22344555
Q ss_pred HHHHHHhcC-CHHHHHHHHHHhCCCCCCcCHhHH--HHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 249 VMGALLRLG-YYAQAVKFVMVCGGRDIKLDTELF--GSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 249 li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
+..++.+.. ...++...+.-.......|-...+ ..|++.+...|+.++|...++++....
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 666655522 112222222222222222222222 256778888999999999999886543
No 455
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=42.93 E-value=93 Score=20.26 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 124 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
++|+-....|+..|..+|..++....-+=.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5566666666666666666666655555555555555555543
No 456
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.62 E-value=2.1e+02 Score=24.29 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=27.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC---CCCCChhhHH--HHHHHHHccCcHHHHHHHHHHHHh
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEG---GFGLSAITFH--PILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
+...-+.++.++|++.++++.+. --.|+...|. .+...+...|+..++.+++++.+.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444444566666666555542 1123333332 223334445666666666655554
No 457
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.32 E-value=2.2e+02 Score=24.47 Aligned_cols=56 Identities=11% Similarity=-0.040 Sum_probs=30.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHhC
Q 038109 215 VLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL-RLGYYAQAVKFVMVCG 270 (324)
Q Consensus 215 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~ 270 (324)
|..+.+.|.+..|+++.+-+..-...-|+.....+|+.|+ +.++++--.++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3445666667777777666665543334444444555443 5555655555555443
No 458
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=42.07 E-value=1.7e+02 Score=23.40 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=10.9
Q ss_pred HHHhcCChhhHHHHHHHHHH
Q 038109 182 AYCFKGNLTATSGVLKKMEE 201 (324)
Q Consensus 182 ~~~~~~~~~~a~~~~~~m~~ 201 (324)
++.+.++.+.+..+.+-+.+
T Consensus 201 a~l~~~~~~~~~~iv~WL~~ 220 (246)
T PF07678_consen 201 ALLKRGDLEEASPIVRWLIS 220 (246)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 33444666666666655544
No 459
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.85 E-value=2.3e+02 Score=24.56 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=23.4
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCChhhHHHHHHHHHH
Q 038109 150 RGKRMEEAWGLMEVMKEIRVSPDLT--AYNYLLTAYCF--KGNLTATSGVLKKMEE 201 (324)
Q Consensus 150 ~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~--~~~~~~a~~~~~~m~~ 201 (324)
..+++..|.++++.+... ++++.. .+..+..+|.. .-++.+|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555565555555554 333332 23333333332 3344455555554443
No 460
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=41.83 E-value=32 Score=20.85 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHhCCCchhH
Q 038109 293 RFNEANFILKEMNKRDLKMGF 313 (324)
Q Consensus 293 ~~~~a~~~~~~m~~~~~~~~~ 313 (324)
+++.|...|.+++..|-.|..
T Consensus 40 d~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChh
Confidence 455555555555555444443
No 461
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.21 E-value=25 Score=29.50 Aligned_cols=88 Identities=11% Similarity=-0.034 Sum_probs=41.9
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCHHHHHHH
Q 038109 47 HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRV 125 (324)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~ 125 (324)
..|.++.|.+.|...+..+ ++....|..-.+++.+.++...+++-++......||.. .|-.=-.+-.-.|+|++|-+.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3455555555555554432 33444444455555555555555555555544444332 221112222233555555555
Q ss_pred HHHHHhCCCC
Q 038109 126 VDIMAEGGFG 135 (324)
Q Consensus 126 ~~~m~~~g~~ 135 (324)
+....+.+..
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 5555554443
No 462
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=40.92 E-value=66 Score=20.31 Aligned_cols=15 Identities=13% Similarity=-0.013 Sum_probs=6.9
Q ss_pred HhcCCHHHHHHHHHH
Q 038109 254 LRLGYYAQAVKFVMV 268 (324)
Q Consensus 254 ~~~g~~~~a~~~~~~ 268 (324)
=+.|++.+|...+++
T Consensus 17 D~~gr~~eAi~~Y~~ 31 (75)
T cd02682 17 EKEGNAEDAITNYKK 31 (75)
T ss_pred HhcCCHHHHHHHHHH
Confidence 344444444444433
No 463
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.59 E-value=61 Score=22.42 Aligned_cols=49 Identities=12% Similarity=0.037 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038109 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259 (324)
Q Consensus 211 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 259 (324)
-..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 3456666777777778888888888887777777766677777777743
No 464
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.26 E-value=83 Score=18.91 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=4.5
Q ss_pred CCHHHHHHHHHHh
Q 038109 257 GYYAQAVKFVMVC 269 (324)
Q Consensus 257 g~~~~a~~~~~~~ 269 (324)
|++-+|-++++.+
T Consensus 13 g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 13 GDFFEAHEVLEEL 25 (62)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHhHHHHHHH
Confidence 3333333333333
No 465
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.81 E-value=2.3e+02 Score=23.81 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChhhHH
Q 038109 173 LTAYNYLLTAYCFKGNLTATS 193 (324)
Q Consensus 173 ~~~~~~li~~~~~~~~~~~a~ 193 (324)
..+|.-|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345677777777777766543
No 466
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=39.75 E-value=3.5e+02 Score=25.96 Aligned_cols=30 Identities=7% Similarity=0.020 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 038109 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKR 61 (324)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 61 (324)
-+.......+++++...|+++.|.+++..-
T Consensus 429 l~~~~~~~~~l~~LL~~~~f~la~~~~~~~ 458 (715)
T PF08314_consen 429 LSKDEIEEIFLEALLSSGRFSLAKSLYEES 458 (715)
T ss_dssp S-HHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHhcC
Confidence 344456777777777788888777777653
No 467
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.68 E-value=2.2e+02 Score=23.66 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHH
Q 038109 155 EEAWGLMEVMKEIR--------VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK-LGADARTYDALVLGACRAGRVE 225 (324)
Q Consensus 155 ~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~ 225 (324)
+..-.+++-+.+.| ++-|...+|.++.- +..+.++--+-.++..+.+ -.-....+..+...|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHC----CCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCc--CCHHHHH
Q 038109 226 EAFVLLRRMVDD----GQSVLYSTYAHVMGA-LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL--ERFNEAN 298 (324)
Q Consensus 226 ~a~~~~~~m~~~----~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~ 298 (324)
.+.+..++..+. |.+.|...--+-+.. |....-+++-++..+.+.+.|...+..---..-.+-... .++.+|-
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAA 212 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHH
Q 038109 299 FILKEMN 305 (324)
Q Consensus 299 ~~~~~m~ 305 (324)
.++-+..
T Consensus 213 ~Ll~d~l 219 (412)
T COG5187 213 ILLSDIL 219 (412)
T ss_pred HHHHHHh
No 468
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.59 E-value=3e+02 Score=25.12 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=36.9
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C------------cCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 200 EEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ-S------------VLYSTYAHVMGALLRLGYYAQAVKFV 266 (324)
Q Consensus 200 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~------------p~~~~~~~li~~~~~~g~~~~a~~~~ 266 (324)
.+.|+..+......++.. ..|+...|..++++....|- . ++......++.++.. |+.+.+..++
T Consensus 192 ~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 345666666555555443 25777777777766543321 0 122222233333332 5555555555
Q ss_pred HHhCCCCCCc
Q 038109 267 MVCGGRDIKL 276 (324)
Q Consensus 267 ~~~~~~~~~~ 276 (324)
+.+...|..|
T Consensus 269 ~~l~~~g~~~ 278 (509)
T PRK14958 269 TRLVEQGVDF 278 (509)
T ss_pred HHHHHcCCCH
Confidence 5555555443
No 469
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=39.15 E-value=3.1e+02 Score=25.23 Aligned_cols=182 Identities=9% Similarity=-0.040 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 038109 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD--LTAYNYLL 180 (324)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li 180 (324)
..+|+..+.--...|+.+.+.-+|++..-.--. =...|--.+.-....|+.+.|..++..-.+-.++-. .....+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a-- 373 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA-- 373 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH--
Confidence 348899999999999999999999887642111 112333333444444888888888877666544333 333333
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCcCHHHHHHH----HH-
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGADAR-TYDALVLGACRAGRVEEAF---VLLRRMVDDGQSVLYSTYAHV----MG- 251 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~---~~~~~m~~~~~~p~~~~~~~l----i~- 251 (324)
...-..|++..|..+++.....- |+.. .-..=+....+.|+.+.+. +++....... -+..++..+ ..
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHH
Confidence 23345789999999999998763 4432 2233345566778888877 4444333221 121222222 22
Q ss_pred HHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcC
Q 038109 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292 (324)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 292 (324)
.+.-.++.+.|..++.++.+. .+++...|..++......+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 234567889999999999887 5668888888888766554
No 470
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.58 E-value=54 Score=20.95 Aligned_cols=28 Identities=21% Similarity=0.067 Sum_probs=23.0
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHHhCCCc
Q 038109 283 SLGSKLIGLERFNEANFILKEMNKRDLK 310 (324)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 310 (324)
++++.+.++.-.++|+++++-|.++|-.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi 63 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEI 63 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCC
Confidence 4567788889999999999999887754
No 471
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.51 E-value=2.6e+02 Score=24.10 Aligned_cols=200 Identities=13% Similarity=0.021 Sum_probs=102.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCcHHHHHHHHHHH-----HhCCCCCCHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS----AITFHPILSVLTRGKRMEEAWGLMEVM-----KEIRVSPDLTA 175 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m-----~~~~~~~~~~~ 175 (324)
..+.+-.++.+.+......++..+.... +.|. ......++..|.+.+++..++..++.- ...+..|....
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~f 182 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYF 182 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHH
Confidence 3456667777777666655555444432 1111 223344566677777766665544421 11111111221
Q ss_pred HHHHHH---HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHhcCCH--------HHHHHHHHHHHH
Q 038109 176 YNYLLT---AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG--------ACRAGRV--------EEAFVLLRRMVD 236 (324)
Q Consensus 176 ~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--------~~~~g~~--------~~a~~~~~~m~~ 236 (324)
...+.. .|...++++.|..+|+..... |....-...+.+ +.-.|+. ..|.+.++.|..
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~ 259 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSN 259 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCc
Confidence 111111 134567899999999887754 333222222222 3344554 344555544431
Q ss_pred -------CCCCcCHHHHHHHHH----HHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHH----HHHhCcCCHHHHHHHH
Q 038109 237 -------DGQSVLYSTYAHVMG----ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLG----SKLIGLERFNEANFIL 301 (324)
Q Consensus 237 -------~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~ 301 (324)
.-..-...+..+++. .+.+-++..-|..++..+-++.+..-..+|.++- ...+..+..++|.+..
T Consensus 260 pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~I 339 (422)
T KOG2582|consen 260 PYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYI 339 (422)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHH
Confidence 000111122444443 2445667777777777766665555566666653 2333557778888877
Q ss_pred HHHHhCC
Q 038109 302 KEMNKRD 308 (324)
Q Consensus 302 ~~m~~~~ 308 (324)
-+|.+.|
T Consensus 340 lqmie~~ 346 (422)
T KOG2582|consen 340 LQMIEDG 346 (422)
T ss_pred HHHhccC
Confidence 7777654
No 472
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.49 E-value=1.1e+02 Score=19.71 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHCC
Q 038109 224 VEEAFVLLRRMVDDG 238 (324)
Q Consensus 224 ~~~a~~~~~~m~~~~ 238 (324)
.+++.++++.+...|
T Consensus 46 ~~q~~~LLd~L~~RG 60 (84)
T cd08326 46 RDQARQLLIDLETRG 60 (84)
T ss_pred HHHHHHHHHHHHhcC
Confidence 444444444444433
No 473
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=37.49 E-value=2.3e+02 Score=23.18 Aligned_cols=86 Identities=8% Similarity=-0.048 Sum_probs=40.6
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCHHHHHHHH----HHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cC
Q 038109 81 NSLSVLSDLCRTLARLDKGFPRKSAYDTLI----GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR----GK 152 (324)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~ 152 (324)
...+.+..+...+....... +......+. .+-....+...|...|..+-+.|..+ ....+-..+.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~-~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG-DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhcC-ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCccc
Confidence 34556666666666654321 112222222 22223345666666666665555432 22223333322 23
Q ss_pred cHHHHHHHHHHHHhCCCC
Q 038109 153 RMEEAWGLMEVMKEIRVS 170 (324)
Q Consensus 153 ~~~~a~~~~~~m~~~~~~ 170 (324)
+..+|...++...+.|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 128 DLVKALKYYEKAAKLGNV 145 (292)
T ss_pred CHHHHHHHHHHHHHcCCh
Confidence 566666666666666543
No 474
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=37.31 E-value=2.9e+02 Score=24.46 Aligned_cols=94 Identities=6% Similarity=-0.065 Sum_probs=0.0
Q ss_pred HHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhch-------hhhhhHHHHHHHH
Q 038109 21 RSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-------NSLSVLSDLCRTL 93 (324)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-------~~~~~~~~a~~~~ 93 (324)
++-.......+.||..+.|.+-..++..-..+-...+|+-..+.+-+--......++-.- .+...-+++.+++
T Consensus 169 elc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfL 248 (669)
T KOG3636|consen 169 ELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFL 248 (669)
T ss_pred HHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHH
Q ss_pred HHHhcCC--CCHHHHHHHHHHHH
Q 038109 94 ARLDKGF--PRKSAYDTLIGRLC 114 (324)
Q Consensus 94 ~~~~~~~--p~~~~~~~li~~~~ 114 (324)
+.|.... .|+.-+-.|..-|+
T Consensus 249 enmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 249 ENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HcCchhcccccchhHHHHHHHHh
No 475
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.65 E-value=89 Score=20.81 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=29.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCH
Q 038109 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278 (324)
Q Consensus 220 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (324)
+..++..|..+|..+.+.|. ++...+..+..-+...++.+-- ..+..=.+.-+.|++
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGR-CDETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred hccCcCcHHHHHHHHHHcCC-CccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 34555666666666666654 3333333455555555555544 444444444444443
No 476
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.56 E-value=1.5e+02 Score=25.06 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=27.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLS-AITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
.+..+.-+.|+..+|.+.|+++.+.-...+ ......+|.++....-+.++..++.+.-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444455666666666665554311101 12233455555555555555554444433
No 477
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.47 E-value=3e+02 Score=24.30 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=22.4
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC
Q 038109 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171 (324)
Q Consensus 140 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 171 (324)
+....|+.+.|.+++..|-.+-+++.+.+..|
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 45566777788888888888888888765443
No 478
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=36.19 E-value=1.1e+02 Score=19.18 Aligned_cols=14 Identities=21% Similarity=0.017 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHH
Q 038109 292 ERFNEANFILKEMN 305 (324)
Q Consensus 292 g~~~~a~~~~~~m~ 305 (324)
|....|..-|++|.
T Consensus 59 G~L~~aL~ey~~~~ 72 (82)
T PF11123_consen 59 GELAAALEEYKKMV 72 (82)
T ss_pred HHHHHHHHHHHHHc
Confidence 44555555666654
No 479
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=36.11 E-value=2.4e+02 Score=22.95 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 207 DARTYDALVLGACRAGRVEEAFVLL 231 (324)
Q Consensus 207 ~~~~~~~li~~~~~~g~~~~a~~~~ 231 (324)
|......+...|.+.|++.+|..-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455566666666666666666544
No 480
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.59 E-value=5e+02 Score=26.52 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HH
Q 038109 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLG-AD-ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY----ST 245 (324)
Q Consensus 173 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~ 245 (324)
..-|...++.+-+.+..+.+.++-....+. +.. |. ..+++.+.+.....|.+-+|.+.+-.- ||. .+
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdc 1056 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHH
Confidence 345677788888888888888776655543 111 12 345677777777888888777665321 332 33
Q ss_pred HHHHHHHHHhcCCHH------------HHHH-HHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHH
Q 038109 246 YAHVMGALLRLGYYA------------QAVK-FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301 (324)
Q Consensus 246 ~~~li~~~~~~g~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (324)
...++-.++..|+++ +... +++...+..+.-....|+.|...+...+++.+|-.+.
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 455555556666544 3333 2333323323334455665666667778888876553
No 481
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.50 E-value=3.4e+02 Score=24.56 Aligned_cols=44 Identities=7% Similarity=-0.060 Sum_probs=25.0
Q ss_pred HHHHHHHHH-HhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 121 EALRVVDIM-AEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 121 ~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
+..+.++.. ...|+..+......+... ..|+...|+.++++...
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHH
Confidence 333444433 235666666665555443 44778888888877543
No 482
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.23 E-value=2.3e+02 Score=22.48 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 038109 214 LVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 214 li~~~~~~g~~~~a~~~~~~m 234 (324)
++.++...|+.+.|..+++.+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444455555555555443
No 483
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.16 E-value=2.2e+02 Score=22.33 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=13.6
Q ss_pred HHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 284 LGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
+.....+.|+.++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344445556666666666665544
No 484
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.02 E-value=2.3e+02 Score=22.59 Aligned_cols=161 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL-TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF-- 185 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-- 185 (324)
++..+-+.++++++...++++...+...+..--+.+-.+| ...|....+++++..+.+..-.-.......++.-|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC---CCCcCHHH
Q 038109 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR-----------------VEEAFVLLRRMVDD---GQSVLYST 245 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~---~~~p~~~~ 245 (324)
......-..-+-.+.+..+.|...+-.+.+..+--.|+ .+.|.+.|+..... .++|+..+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHH-----hcCCHHHHHHHHHHh
Q 038109 246 YAHVMGALL-----RLGYYAQAVKFVMVC 269 (324)
Q Consensus 246 ~~~li~~~~-----~~g~~~~a~~~~~~~ 269 (324)
+..++--|+ ..|+.++|.++-+..
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHH
No 485
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.00 E-value=2.3e+02 Score=22.49 Aligned_cols=98 Identities=14% Similarity=0.020 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCH
Q 038109 204 LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV-----LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278 (324)
Q Consensus 204 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (324)
+.++..-+|.|+--|.-...+.+|.+.|..-. |+.| +...=..-|......|+++.|......+...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Q ss_pred hHHHHHHHHHh----CcCCHHHHHHHHHH
Q 038109 279 ELFGSLGSKLI----GLERFNEANFILKE 303 (324)
Q Consensus 279 ~~~~~l~~~~~----~~g~~~~a~~~~~~ 303 (324)
..+-.|...-. +.|..++|++..+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 486
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.29 E-value=2.2e+02 Score=22.02 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=13.0
Q ss_pred hcCCHHHHHHHHHHhCC
Q 038109 255 RLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 255 ~~g~~~~a~~~~~~~~~ 271 (324)
+.|+++.|++.++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 67888888888877754
No 487
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.77 E-value=5.4e+02 Score=26.42 Aligned_cols=155 Identities=13% Similarity=0.032 Sum_probs=93.0
Q ss_pred HHHHccCCHHHHHH------HHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHH-------HHhCCCCCCHHHHH
Q 038109 111 GRLCKLKKIDEALR------VVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV-------MKEIRVSPDLTAYN 177 (324)
Q Consensus 111 ~~~~~~~~~~~a~~------~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-------m~~~~~~~~~~~~~ 177 (324)
......|.+.+|.+ ++......--++....|..+-..+.+.++.++|...-.. +....-.-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 34445556665555 555332222334566778888888899999888765443 22222223445566
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC--CcCH
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEE-----KL-GAD-ARTYDALVLGACRAGRVEEAFVLLRRMVDD-----GQ--SVLY 243 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~--~p~~ 243 (324)
.+.-.+..+++...|...+.+.... |. .|. ..+++.+-..+...++.+.|.++.+..... |. -++.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6666666777888888777665432 22 344 334444433444558888888888877643 21 2456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 038109 244 STYAHVMGALLRLGYYAQAVKF 265 (324)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~ 265 (324)
.++..+.+.+...+++..|...
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHH
Confidence 6777777777777777776554
No 488
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.63 E-value=4.4e+02 Score=25.36 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=12.3
Q ss_pred HHHHHHccCcHHHHHHHHHHHH
Q 038109 144 ILSVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 144 li~~~~~~~~~~~a~~~~~~m~ 165 (324)
|...|...+++.+|+.++-..+
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 4455555566666665555544
No 489
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=33.40 E-value=1.8e+02 Score=25.92 Aligned_cols=102 Identities=11% Similarity=-0.015 Sum_probs=51.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCc-hhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCH
Q 038109 42 VNAAGHERDLETVRYLLNKRARDCCFNTA-NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKI 119 (324)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~ 119 (324)
+..+.+.+.++.|..++.+.++. .|+- ..|..-..++.+.+++..|..=+..+.+..|+.. .|-.=..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34455566777777777777664 3433 2333333556666666666665555544444321 232223344444455
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038109 120 DEALRVVDIMAEGGFGLSAITFHPILSV 147 (324)
Q Consensus 120 ~~a~~~~~~m~~~g~~~~~~~~~~li~~ 147 (324)
.+|+..|+.... +.|+..-....+.-
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHH
Confidence 555555554443 34554444444433
No 490
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=33.37 E-value=1.6e+02 Score=20.01 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCC
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG--RVEEAFVLLRRMVDDGQ 239 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~ 239 (324)
...++.-|...+++++|.+-+.++..... .......++..+...+ .-+.+..++..+.+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 34567778888999999998888764321 2333444444444442 33445566666665554
No 491
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=33.18 E-value=2.6e+02 Score=22.57 Aligned_cols=52 Identities=23% Similarity=0.140 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcC
Q 038109 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE----KLGADARTYDALVLGACRAG 222 (324)
Q Consensus 171 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g 222 (324)
|-......++...-+....++...+++.+... |..|+......++.+++..|
T Consensus 9 P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~G 64 (253)
T PF09090_consen 9 PFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIG 64 (253)
T ss_dssp TTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhc
Confidence 34444445555544444445555555544332 12233445555555555444
No 492
>COG5210 GTPase-activating protein [General function prediction only]
Probab=33.08 E-value=3.7e+02 Score=24.35 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 038109 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241 (324)
Q Consensus 193 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 241 (324)
-+++..|...|+.+...++..++..+.+.-..+.+.++++.+--.|..-
T Consensus 362 p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~ 410 (496)
T COG5210 362 PELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSM 410 (496)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHH
Confidence 4566777788888888888888888888888888888888887766543
No 493
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.39 E-value=4e+02 Score=25.08 Aligned_cols=89 Identities=8% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCch------hhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q 038109 42 VNAAGHERDLETVRYLLNKRARDCCFNTAN------TFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLC 114 (324)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~ 114 (324)
..-..+..++..+.+.|..-.+. ++.|.. ....+.-+|....+.|.|.+++++..+..| +..+--.+..+..
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Q ss_pred ccCCHHHHHHHHHHHHh
Q 038109 115 KLKKIDEALRVVDIMAE 131 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~ 131 (324)
..|..++|+.+......
T Consensus 440 ~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKS 456 (872)
T ss_pred HhcchHHHHHHHHHHHh
No 494
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=31.78 E-value=96 Score=19.35 Aligned_cols=35 Identities=29% Similarity=0.202 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038109 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255 (324)
Q Consensus 221 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 255 (324)
.++.+.+.+++++....|..|.......+..+..+
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44555555555555555554444444434444333
No 495
>PHA02798 ankyrin-like protein; Provisional
Probab=31.36 E-value=2.9e+02 Score=24.86 Aligned_cols=153 Identities=8% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCC---hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhhHHHHHH
Q 038109 123 LRVVDIMAEGGFGLS---AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLT--AYNYLLTAYCFKGNLTATSGVLK 197 (324)
Q Consensus 123 ~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~ 197 (324)
.++++.+.+.|..++ ..-.+.+..++..........++.+.+.+.|..++.. .-.+.+...+..+.. .-.++.+
T Consensus 51 ~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~-~~~~iv~ 129 (489)
T PHA02798 51 TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI-NNLEILL 129 (489)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc-ChHHHHH
Q ss_pred HHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 198 KMEEEKLGADARTY--DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS---TYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 198 ~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
.+.+.|..++.... .+.+..+++.|. ..-.++.+.+.+.|..++.. .-...+..+.+.+--..-.++++.+.+.
T Consensus 130 ~Ll~~Gadvn~~d~~g~tpL~~a~~~~~-~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~ 208 (489)
T PHA02798 130 FMIENGADTTLLDKDGFTMLQVYLQSNH-HIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDN 208 (489)
T ss_pred HHHHcCCCccccCCCCCcHHHHHHHcCC-cchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHC
Q ss_pred CCCcC
Q 038109 273 DIKLD 277 (324)
Q Consensus 273 ~~~~~ 277 (324)
|..++
T Consensus 209 Ga~i~ 213 (489)
T PHA02798 209 GFIIN 213 (489)
T ss_pred CCCcc
No 496
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=31.34 E-value=1.6e+02 Score=26.14 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=8.3
Q ss_pred HccCCHHHHHHHHHHHHh
Q 038109 114 CKLKKIDEALRVVDIMAE 131 (324)
Q Consensus 114 ~~~~~~~~a~~~~~~m~~ 131 (324)
.+.++++.|..++.+..+
T Consensus 15 l~~~~fd~avdlysKaI~ 32 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE 32 (476)
T ss_pred cccchHHHHHHHHHHHHh
Confidence 334444444444444444
No 497
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=31.28 E-value=5.4e+02 Score=25.64 Aligned_cols=81 Identities=11% Similarity=-0.004 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC-CCCCcCHhHHHHHHHHHhCcCCHHHHHHHHH
Q 038109 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG-RDIKLDTELFGSLGSKLIGLERFNEANFILK 302 (324)
Q Consensus 224 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (324)
.+.-.+.|.++.+---.-|..++..-...+...|++..|.+++.++.+ .|-.++...|-.++..+...|.- -...+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHh
Confidence 344555555555432223444555555666677788888877766654 44456667777777777766643 4444454
Q ss_pred HHH
Q 038109 303 EMN 305 (324)
Q Consensus 303 ~m~ 305 (324)
.+.
T Consensus 1291 ~~~ 1293 (1304)
T KOG1114|consen 1291 NWM 1293 (1304)
T ss_pred hhe
Confidence 443
No 498
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.26 E-value=4.1e+02 Score=24.26 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHHHCCCCcC
Q 038109 222 GRVEEAFVLLRRMVDDGQSVL 242 (324)
Q Consensus 222 g~~~~a~~~~~~m~~~~~~p~ 242 (324)
++.+.++.++++|...|..|.
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 556666666666666665543
No 499
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.07 E-value=1.7e+02 Score=19.77 Aligned_cols=66 Identities=15% Similarity=0.057 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHHHHHhhhcC
Q 038109 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYEINVK 324 (324)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~vk 324 (324)
+...-++.+++....+....+.....|.-.|.+.|+-+.|.+-|+. .+.-+.-+-.+.+++-+..|
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet-EKalFPES~~fmDFLmk~~k 117 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET-EKALFPESGVFMDFLMKNGK 117 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH-hhhhCccchhHHHHHHHccc
No 500
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.98 E-value=1.6e+02 Score=19.56 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 038109 87 SDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF 134 (324)
Q Consensus 87 ~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 134 (324)
+...+++..-........+++.|+.++...|.-..|.++-+.+...|.
T Consensus 48 eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~~ 95 (96)
T cd08315 48 EQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELISSGK 95 (96)
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcCC
Done!