Query 038109
Match_columns 324
No_of_seqs 437 out of 1470
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 12:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 5.7E-37 2E-41 267.5 22.7 188 104-291 27-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.9E-36 1.7E-40 261.6 22.5 201 120-320 7-217 (501)
3 2xpi_A Anaphase-promoting comp 100.0 2.3E-28 8E-33 219.9 31.9 296 4-309 279-581 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.5E-27 5E-32 214.7 28.2 301 6-312 159-513 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3.1E-22 1.1E-26 170.6 35.2 266 37-308 103-369 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 9.5E-22 3.3E-26 167.6 33.2 268 34-307 66-334 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 6.2E-21 2.1E-25 165.6 32.7 290 7-307 36-358 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 3E-20 1E-24 161.3 29.3 268 33-308 24-325 (450)
9 3spa_A Mtrpol, DNA-directed RN 99.9 2.9E-22 9.8E-27 181.0 13.3 151 137-292 126-286 (1134)
10 3hym_B Cell division cycle pro 99.9 1.6E-19 5.6E-24 149.9 27.9 272 32-308 19-300 (330)
11 1fch_A Peroxisomal targeting s 99.9 4.5E-20 1.5E-24 155.9 23.0 266 34-303 63-355 (368)
12 3ieg_A DNAJ homolog subfamily 99.9 5.3E-18 1.8E-22 142.3 34.4 292 7-308 13-336 (359)
13 3spa_A Mtrpol, DNA-directed RN 99.9 8.7E-22 3E-26 177.9 9.7 149 104-257 128-286 (1134)
14 4eqf_A PEX5-related protein; a 99.8 2.2E-19 7.6E-24 151.6 21.2 267 34-303 64-352 (365)
15 3hym_B Cell division cycle pro 99.8 1.2E-17 4.2E-22 138.5 30.4 278 9-295 34-322 (330)
16 2gw1_A Mitochondrial precursor 99.8 1.5E-18 5.2E-23 152.9 26.2 289 8-307 17-401 (514)
17 3cv0_A Peroxisome targeting si 99.8 2.2E-18 7.5E-23 142.9 24.9 263 36-303 22-311 (327)
18 3ieg_A DNAJ homolog subfamily 99.8 2.7E-17 9.3E-22 137.9 30.6 270 34-308 2-302 (359)
19 2gw1_A Mitochondrial precursor 99.8 1.2E-17 4.2E-22 147.1 25.7 267 36-308 7-368 (514)
20 3mkr_A Coatomer subunit epsilo 99.8 1.4E-17 4.8E-22 136.0 23.5 251 43-307 7-264 (291)
21 1fch_A Peroxisomal targeting s 99.8 1.6E-17 5.6E-22 140.1 22.4 258 46-307 36-314 (368)
22 3fp2_A TPR repeat-containing p 99.8 2.1E-17 7.3E-22 146.5 21.5 288 8-307 36-407 (537)
23 4eqf_A PEX5-related protein; a 99.8 2E-17 6.8E-22 139.6 20.3 236 69-307 64-310 (365)
24 3fp2_A TPR repeat-containing p 99.8 3.1E-16 1.1E-20 139.0 28.6 228 78-309 251-493 (537)
25 1b89_A Protein (clathrin heavy 99.8 4.4E-18 1.5E-22 142.9 14.5 250 10-302 16-267 (449)
26 3cv0_A Peroxisome targeting si 99.8 1.4E-16 4.8E-21 131.9 23.1 254 8-269 32-312 (327)
27 1b89_A Protein (clathrin heavy 99.8 3.3E-18 1.1E-22 143.6 12.9 222 47-307 15-236 (449)
28 3mkr_A Coatomer subunit epsilo 99.7 3.1E-16 1.1E-20 128.0 20.8 267 10-300 12-287 (291)
29 3uq3_A Heat shock protein STI1 99.7 7.2E-16 2.5E-20 123.2 21.4 222 36-271 6-235 (258)
30 2pl2_A Hypothetical conserved 99.7 1.2E-15 4.2E-20 119.0 20.6 194 105-304 7-211 (217)
31 2pl2_A Hypothetical conserved 99.7 9E-16 3.1E-20 119.8 18.7 198 68-270 3-212 (217)
32 3uq3_A Heat shock protein STI1 99.7 1.9E-15 6.4E-20 120.8 19.9 227 70-308 5-237 (258)
33 1ouv_A Conserved hypothetical 99.7 1.1E-13 3.7E-18 111.8 28.9 224 70-309 6-253 (273)
34 1xnf_A Lipoprotein NLPI; TPR, 99.7 8.6E-16 3E-20 124.1 15.6 247 46-301 16-269 (275)
35 2vq2_A PILW, putative fimbrial 99.7 2.7E-14 9.4E-19 111.5 23.0 23 39-61 12-34 (225)
36 3u4t_A TPR repeat-containing p 99.7 1.1E-14 3.8E-19 117.4 21.2 232 38-273 6-251 (272)
37 2ho1_A Type 4 fimbrial biogene 99.7 3.5E-14 1.2E-18 113.2 23.6 196 73-271 40-237 (252)
38 2vq2_A PILW, putative fimbrial 99.7 4.6E-14 1.6E-18 110.2 23.4 203 68-272 6-211 (225)
39 2ho1_A Type 4 fimbrial biogene 99.7 4.9E-14 1.7E-18 112.3 23.4 202 103-308 37-239 (252)
40 1xnf_A Lipoprotein NLPI; TPR, 99.7 5E-14 1.7E-18 113.6 23.2 229 75-309 10-246 (275)
41 2h6f_A Protein farnesyltransfe 99.7 4.1E-14 1.4E-18 119.4 22.8 247 36-289 98-364 (382)
42 3u4t_A TPR repeat-containing p 99.7 2.6E-14 8.8E-19 115.2 20.9 236 70-308 3-251 (272)
43 1ouv_A Conserved hypothetical 99.7 3.3E-13 1.1E-17 109.0 27.2 224 34-273 5-252 (273)
44 2q7f_A YRRB protein; TPR, prot 99.7 1.4E-14 4.8E-19 114.7 18.6 156 77-235 30-186 (243)
45 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-14 6E-19 114.1 18.1 203 32-238 20-223 (243)
46 2h6f_A Protein farnesyltransfe 99.6 1.7E-13 5.8E-18 115.6 22.7 232 71-308 98-349 (382)
47 3sf4_A G-protein-signaling mod 99.6 3.5E-14 1.2E-18 121.1 16.7 275 31-306 5-335 (406)
48 4a1s_A PINS, partner of inscut 99.6 1.9E-14 6.5E-19 123.2 14.9 271 37-308 50-373 (411)
49 2xm6_A Protein corresponding t 99.6 3.1E-11 1.1E-15 105.8 34.6 50 256-308 380-433 (490)
50 2ond_A Cleavage stimulation fa 99.6 5.5E-12 1.9E-16 103.7 27.1 216 52-272 33-270 (308)
51 2xm6_A Protein corresponding t 99.6 5.3E-11 1.8E-15 104.3 34.2 256 34-308 38-326 (490)
52 3ro2_A PINS homolog, G-protein 99.6 3.9E-14 1.3E-18 117.3 13.4 270 37-307 7-332 (338)
53 4abn_A Tetratricopeptide repea 99.6 2.1E-13 7.1E-18 119.0 18.5 217 83-304 81-318 (474)
54 2ooe_A Cleavage stimulation fa 99.6 1.2E-11 4.1E-16 109.6 29.9 155 151-308 292-455 (530)
55 3ulq_A Response regulator aspa 99.5 1.1E-12 3.7E-17 111.4 21.1 297 8-306 23-367 (383)
56 3vtx_A MAMA; tetratricopeptide 99.5 1.5E-12 5.2E-17 98.5 19.7 162 71-235 6-168 (184)
57 2ond_A Cleavage stimulation fa 99.5 4.9E-12 1.7E-16 104.0 24.0 218 87-308 33-271 (308)
58 4g1t_A Interferon-induced prot 99.5 1.6E-11 5.5E-16 106.9 28.5 276 31-311 47-367 (472)
59 3nf1_A KLC 1, kinesin light ch 99.5 5E-14 1.7E-18 115.6 11.7 201 105-306 71-306 (311)
60 3vtx_A MAMA; tetratricopeptide 99.5 4.7E-12 1.6E-16 95.8 20.4 166 102-271 4-169 (184)
61 4abn_A Tetratricopeptide repea 99.5 1.3E-12 4.3E-17 114.1 19.3 213 51-268 84-317 (474)
62 1xi4_A Clathrin heavy chain; a 99.5 2.5E-11 8.4E-16 114.1 28.6 220 47-305 1088-1307(1630)
63 3sf4_A G-protein-signaling mod 99.5 1.2E-13 4.1E-18 117.8 10.8 285 8-294 20-363 (406)
64 1xi4_A Clathrin heavy chain; a 99.5 6.1E-11 2.1E-15 111.5 28.9 236 33-302 1103-1340(1630)
65 4g1t_A Interferon-induced prot 99.5 6.7E-11 2.3E-15 103.0 27.3 295 10-308 64-402 (472)
66 4a1s_A PINS, partner of inscut 99.5 4.9E-13 1.7E-17 114.4 12.8 263 8-272 59-372 (411)
67 3nf1_A KLC 1, kinesin light ch 99.5 1.6E-12 5.5E-17 106.5 15.1 238 33-271 25-306 (311)
68 3ro2_A PINS homolog, G-protein 99.4 2.2E-12 7.4E-17 106.8 14.3 265 8-272 16-332 (338)
69 1hz4_A MALT regulatory protein 99.4 1.2E-10 3.9E-15 98.4 25.1 264 41-305 20-320 (373)
70 3q15_A PSP28, response regulat 99.4 3.1E-11 1.1E-15 102.2 21.4 295 9-306 24-364 (378)
71 3as5_A MAMA; tetratricopeptide 99.4 2.6E-11 8.8E-16 91.3 18.5 158 108-269 13-170 (186)
72 2ooe_A Cleavage stimulation fa 99.4 3.5E-10 1.2E-14 100.2 28.6 217 87-307 255-492 (530)
73 3as5_A MAMA; tetratricopeptide 99.4 3E-11 1E-15 90.9 17.9 166 138-307 8-173 (186)
74 4gyw_A UDP-N-acetylglucosamine 99.4 1.6E-11 5.4E-16 111.7 17.3 162 71-235 10-172 (723)
75 1qqe_A Vesicular transport pro 99.4 1.1E-10 3.9E-15 95.0 20.0 214 85-313 32-273 (292)
76 3ulq_A Response regulator aspa 99.4 1.1E-10 3.8E-15 98.9 20.3 228 41-271 109-367 (383)
77 3edt_B KLC 2, kinesin light ch 99.4 1.5E-11 5.1E-16 99.2 13.8 224 82-306 20-280 (283)
78 4gyw_A UDP-N-acetylglucosamine 99.3 6.5E-11 2.2E-15 107.7 18.7 167 101-271 6-173 (723)
79 4i17_A Hypothetical protein; T 99.3 4.9E-10 1.7E-14 87.7 21.0 195 102-308 6-210 (228)
80 3edt_B KLC 2, kinesin light ch 99.3 4.6E-11 1.6E-15 96.3 15.1 226 45-271 11-280 (283)
81 4i17_A Hypothetical protein; T 99.3 8.2E-10 2.8E-14 86.4 21.3 155 136-294 5-169 (228)
82 3e4b_A ALGK; tetratricopeptide 99.3 8.4E-09 2.9E-13 89.3 27.6 212 86-315 161-395 (452)
83 3q15_A PSP28, response regulat 99.3 8.7E-10 3E-14 93.3 20.8 224 44-271 110-364 (378)
84 3e4b_A ALGK; tetratricopeptide 99.3 2.5E-10 8.4E-15 99.0 16.8 248 41-305 9-314 (452)
85 3mv2_B Coatomer subunit epsilo 99.2 1.1E-09 3.8E-14 88.3 18.9 180 122-308 85-283 (310)
86 1hz4_A MALT regulatory protein 99.2 1.7E-09 5.9E-14 91.1 21.2 232 75-306 19-281 (373)
87 2fo7_A Synthetic consensus TPR 99.2 7.9E-10 2.7E-14 78.3 15.7 128 176-306 4-131 (136)
88 2fo7_A Synthetic consensus TPR 99.2 1.3E-09 4.4E-14 77.2 16.4 129 105-236 3-131 (136)
89 1qqe_A Vesicular transport pro 99.2 8.4E-10 2.9E-14 89.9 15.0 206 50-272 32-269 (292)
90 4ga2_A E3 SUMO-protein ligase 99.1 1.9E-09 6.4E-14 78.5 14.2 145 76-223 3-149 (150)
91 3qky_A Outer membrane assembly 99.1 2.3E-09 7.9E-14 85.7 15.8 60 177-236 152-223 (261)
92 3qky_A Outer membrane assembly 99.1 3.4E-09 1.2E-13 84.7 16.2 183 70-272 15-224 (261)
93 2pzi_A Probable serine/threoni 99.1 3.4E-09 1.2E-13 96.6 18.0 185 114-304 402-602 (681)
94 3urz_A Uncharacterized protein 99.1 1.1E-08 3.8E-13 78.8 18.1 125 144-272 60-186 (208)
95 3mv2_B Coatomer subunit epsilo 99.1 1.3E-08 4.5E-13 82.1 18.4 179 89-273 85-283 (310)
96 2pzi_A Probable serine/threoni 99.1 3.4E-09 1.2E-13 96.5 16.1 173 46-223 402-583 (681)
97 2ifu_A Gamma-SNAP; membrane fu 99.1 1.5E-08 5.1E-13 83.1 18.4 228 47-300 3-254 (307)
98 3urz_A Uncharacterized protein 99.1 1.9E-08 6.6E-13 77.4 17.5 129 176-308 57-187 (208)
99 3rjv_A Putative SEL1 repeat pr 99.0 5.9E-08 2E-12 74.9 19.4 165 138-311 18-201 (212)
100 2vsy_A XCC0866; transferase, g 99.0 1.4E-08 4.9E-13 90.6 17.7 155 48-205 2-160 (568)
101 2r5s_A Uncharacterized protein 99.0 3.1E-09 1.1E-13 79.6 11.1 157 75-234 11-170 (176)
102 2yhc_A BAMD, UPF0169 lipoprote 99.0 7E-08 2.4E-12 75.2 18.9 64 36-101 5-72 (225)
103 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.3E-08 1.5E-12 76.4 17.7 60 249-308 153-214 (225)
104 3qou_A Protein YBBN; thioredox 99.0 6.4E-09 2.2E-13 84.4 13.3 178 85-269 101-281 (287)
105 3rjv_A Putative SEL1 repeat pr 99.0 6.7E-08 2.3E-12 74.6 18.3 163 102-273 17-198 (212)
106 3qou_A Protein YBBN; thioredox 99.0 3E-08 1E-12 80.5 17.0 167 135-305 114-282 (287)
107 3dra_A Protein farnesyltransfe 99.0 2.2E-07 7.4E-12 75.5 21.6 215 52-270 50-285 (306)
108 2r5s_A Uncharacterized protein 99.0 9.4E-09 3.2E-13 76.9 12.7 156 145-304 13-170 (176)
109 3dra_A Protein farnesyltransfe 99.0 3.8E-07 1.3E-11 74.1 22.8 216 87-306 50-286 (306)
110 2vsy_A XCC0866; transferase, g 99.0 1.9E-08 6.6E-13 89.8 16.3 162 116-282 2-166 (568)
111 4ga2_A E3 SUMO-protein ligase 99.0 7E-09 2.4E-13 75.4 10.7 121 112-235 6-127 (150)
112 2ifu_A Gamma-SNAP; membrane fu 98.9 5E-08 1.7E-12 79.9 16.4 223 10-265 4-254 (307)
113 3u3w_A Transcriptional activat 98.9 2.6E-07 8.8E-12 75.1 20.5 161 145-305 82-264 (293)
114 3u3w_A Transcriptional activat 98.9 4.7E-07 1.6E-11 73.5 22.0 160 110-269 82-263 (293)
115 2qfc_A PLCR protein; TPR, HTH, 98.9 1E-06 3.6E-11 71.5 22.9 164 105-268 77-262 (293)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.8E-07 1.3E-11 70.1 18.8 128 106-238 9-151 (213)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.6E-07 1.2E-11 70.3 18.3 130 141-275 9-153 (213)
118 4e6h_A MRNA 3'-END-processing 98.8 6.7E-07 2.3E-11 80.7 20.6 219 87-308 326-571 (679)
119 1a17_A Serine/threonine protei 98.8 2.7E-07 9.4E-12 67.7 15.0 128 174-304 14-143 (166)
120 1a17_A Serine/threonine protei 98.8 4.4E-07 1.5E-11 66.6 15.6 127 105-234 15-143 (166)
121 3gw4_A Uncharacterized protein 98.8 1.7E-07 5.7E-12 71.4 13.7 154 115-269 4-173 (203)
122 4e6h_A MRNA 3'-END-processing 98.8 6.7E-07 2.3E-11 80.7 19.1 248 36-288 303-584 (679)
123 3q7a_A Farnesyltransferase alp 98.8 4.4E-06 1.5E-10 68.7 22.0 170 48-221 67-255 (349)
124 1na0_A Designed protein CTPR3; 98.7 7.2E-07 2.5E-11 61.7 14.9 92 142-235 13-104 (125)
125 1na0_A Designed protein CTPR3; 98.7 4.7E-07 1.6E-11 62.7 13.9 114 173-289 9-122 (125)
126 2qfc_A PLCR protein; TPR, HTH, 98.7 1.5E-06 5E-11 70.6 18.7 167 139-305 76-264 (293)
127 4gco_A Protein STI-1; structur 98.7 6E-07 2.1E-11 62.9 13.8 94 176-271 16-109 (126)
128 2c2l_A CHIP, carboxy terminus 98.7 6.1E-08 2.1E-12 78.3 9.8 193 34-236 3-198 (281)
129 3gw4_A Uncharacterized protein 98.7 2.4E-07 8.3E-12 70.5 12.7 155 82-236 4-175 (203)
130 3q7a_A Farnesyltransferase alp 98.7 1.5E-05 5E-10 65.6 23.7 218 86-307 70-331 (349)
131 2lni_A Stress-induced-phosphop 98.7 4.5E-07 1.5E-11 63.7 13.0 97 173-271 16-112 (133)
132 4f3v_A ESX-1 secretion system 98.7 4.4E-07 1.5E-11 72.3 14.0 128 178-308 107-238 (282)
133 4gco_A Protein STI-1; structur 98.7 8.3E-07 2.9E-11 62.2 14.0 96 105-202 15-110 (126)
134 2c2l_A CHIP, carboxy terminus 98.7 1.1E-07 3.8E-12 76.8 10.4 194 103-306 4-198 (281)
135 2vyi_A SGTA protein; chaperone 98.7 5.7E-07 2E-11 62.8 12.9 115 175-292 14-128 (131)
136 2vyi_A SGTA protein; chaperone 98.7 8.6E-07 2.9E-11 61.9 13.6 115 105-222 14-128 (131)
137 2lni_A Stress-induced-phosphop 98.7 9E-07 3.1E-11 62.1 13.4 96 105-202 18-113 (133)
138 3gyz_A Chaperone protein IPGC; 98.7 8.6E-08 2.9E-12 69.5 7.9 96 105-202 38-133 (151)
139 4f3v_A ESX-1 secretion system 98.6 2.7E-06 9.4E-11 67.7 16.8 187 47-237 18-237 (282)
140 1p5q_A FKBP52, FK506-binding p 98.6 1.4E-06 4.7E-11 72.3 15.6 131 103-235 147-292 (336)
141 3gyz_A Chaperone protein IPGC; 98.6 1.5E-06 5E-11 63.0 13.8 95 140-236 38-132 (151)
142 2e2e_A Formate-dependent nitri 98.6 3.2E-07 1.1E-11 68.4 10.5 121 80-202 20-144 (177)
143 1p5q_A FKBP52, FK506-binding p 98.6 1.1E-06 3.6E-11 73.0 14.5 130 173-304 147-291 (336)
144 2vgx_A Chaperone SYCD; alterna 98.6 2.4E-07 8.2E-12 67.0 8.5 99 172-272 20-118 (148)
145 2e2e_A Formate-dependent nitri 98.6 5.4E-07 1.9E-11 67.1 10.6 123 148-273 20-145 (177)
146 1elw_A TPR1-domain of HOP; HOP 98.6 5.9E-06 2E-10 56.4 15.0 97 174-272 5-101 (118)
147 2fbn_A 70 kDa peptidylprolyl i 98.6 1.4E-07 4.9E-12 71.8 7.2 118 105-224 40-172 (198)
148 2vgx_A Chaperone SYCD; alterna 98.6 1.1E-06 3.8E-11 63.5 11.5 95 140-236 23-117 (148)
149 1elw_A TPR1-domain of HOP; HOP 98.5 7.8E-06 2.7E-10 55.7 14.4 89 145-235 11-99 (118)
150 2uy1_A Cleavage stimulation fa 98.5 0.00047 1.6E-08 60.1 30.3 121 177-305 290-411 (493)
151 4b4t_Q 26S proteasome regulato 98.5 4.1E-05 1.4E-09 65.5 21.8 194 43-236 12-244 (434)
152 4b4t_Q 26S proteasome regulato 98.5 1.6E-05 5.3E-10 68.1 18.8 192 78-269 12-242 (434)
153 3upv_A Heat shock protein STI1 98.5 5E-06 1.7E-10 58.0 12.8 92 142-235 8-99 (126)
154 4gcn_A Protein STI-1; structur 98.5 4.1E-06 1.4E-10 58.7 12.2 96 175-271 10-111 (127)
155 3dss_A Geranylgeranyl transfer 98.5 0.0002 6.8E-09 58.6 23.7 187 47-237 41-267 (331)
156 3upv_A Heat shock protein STI1 98.5 4.4E-06 1.5E-10 58.3 12.3 98 173-272 4-101 (126)
157 2fbn_A 70 kDa peptidylprolyl i 98.4 3.5E-06 1.2E-10 64.0 12.4 131 175-307 40-186 (198)
158 2kck_A TPR repeat; tetratricop 98.4 3E-06 1E-10 57.3 10.8 57 143-200 11-67 (112)
159 2kck_A TPR repeat; tetratricop 98.4 4.2E-06 1.4E-10 56.6 11.3 94 72-166 8-105 (112)
160 3sz7_A HSC70 cochaperone (SGT) 98.4 1E-05 3.5E-10 59.3 14.1 96 139-236 12-107 (164)
161 3q49_B STIP1 homology and U bo 98.4 1E-05 3.4E-10 57.2 13.5 96 138-235 9-104 (137)
162 1elr_A TPR2A-domain of HOP; HO 98.4 5.4E-06 1.8E-10 57.8 11.6 95 176-271 7-107 (131)
163 2xcb_A PCRH, regulatory protei 98.4 4.5E-06 1.6E-10 59.7 11.3 94 176-271 21-114 (142)
164 2xcb_A PCRH, regulatory protei 98.4 6.6E-06 2.3E-10 58.8 12.2 90 144-235 24-113 (142)
165 2dba_A Smooth muscle cell asso 98.4 3.3E-05 1.1E-09 55.1 15.3 98 102-202 27-128 (148)
166 2dba_A Smooth muscle cell asso 98.3 2.5E-05 8.4E-10 55.7 14.2 93 140-235 30-126 (148)
167 3q49_B STIP1 homology and U bo 98.3 2.4E-05 8.2E-10 55.1 13.9 100 171-272 7-106 (137)
168 1elr_A TPR2A-domain of HOP; HO 98.3 6.7E-06 2.3E-10 57.2 10.9 96 141-237 7-108 (131)
169 4gcn_A Protein STI-1; structur 98.3 1.2E-05 4.1E-10 56.3 12.0 59 106-165 11-69 (127)
170 3ro3_A PINS homolog, G-protein 98.3 4.8E-06 1.6E-10 60.4 10.4 131 175-305 11-156 (164)
171 3sz7_A HSC70 cochaperone (SGT) 98.3 1.4E-05 4.7E-10 58.6 12.7 100 172-273 10-109 (164)
172 2uy1_A Cleavage stimulation fa 98.3 0.00023 7.8E-09 62.1 21.9 68 32-99 44-118 (493)
173 1wao_1 Serine/threonine protei 98.3 2E-06 6.7E-11 74.9 8.6 125 71-197 7-134 (477)
174 1wao_1 Serine/threonine protei 98.3 1.6E-05 5.4E-10 69.2 13.9 85 150-236 18-102 (477)
175 3ro3_A PINS homolog, G-protein 98.3 9.9E-06 3.4E-10 58.6 10.9 95 175-269 51-155 (164)
176 3k9i_A BH0479 protein; putativ 98.3 3.1E-06 1.1E-10 58.3 7.6 85 151-236 3-89 (117)
177 3dss_A Geranylgeranyl transfer 98.2 0.0011 3.8E-08 54.2 23.4 221 83-309 42-306 (331)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.1E-05 7.3E-10 68.1 13.9 122 175-298 270-405 (457)
179 1hxi_A PEX5, peroxisome target 98.2 1.6E-05 5.5E-10 55.1 10.7 88 146-235 25-112 (121)
180 1hxi_A PEX5, peroxisome target 98.2 2.1E-05 7.1E-10 54.5 11.1 95 176-272 20-114 (121)
181 2xev_A YBGF; tetratricopeptide 98.2 0.0001 3.4E-09 51.2 14.2 89 146-236 10-104 (129)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 3.5E-05 1.2E-09 66.7 13.6 138 103-263 268-405 (457)
183 2xev_A YBGF; tetratricopeptide 98.2 0.00015 5.1E-09 50.3 14.5 94 108-203 7-106 (129)
184 1ihg_A Cyclophilin 40; ppiase 98.1 4.1E-05 1.4E-09 64.2 12.6 138 105-264 225-362 (370)
185 1ihg_A Cyclophilin 40; ppiase 98.1 3.7E-05 1.3E-09 64.5 11.9 123 174-299 224-362 (370)
186 3k9i_A BH0479 protein; putativ 98.1 8.1E-06 2.8E-10 56.1 6.1 86 116-202 3-90 (117)
187 3rkv_A Putative peptidylprolyl 98.0 0.00015 5.2E-09 52.8 12.7 64 173-237 63-126 (162)
188 3rkv_A Putative peptidylprolyl 98.0 8.7E-05 3E-09 54.1 11.1 99 173-272 11-126 (162)
189 2if4_A ATFKBP42; FKBP-like, al 98.0 4.6E-05 1.6E-09 63.1 10.2 96 210-307 232-328 (338)
190 3n71_A Histone lysine methyltr 98.0 6.6E-05 2.3E-09 65.2 11.4 125 182-306 318-463 (490)
191 1dce_A Protein (RAB geranylger 97.9 0.00061 2.1E-08 60.5 17.3 173 117-294 43-242 (567)
192 1dce_A Protein (RAB geranylger 97.9 0.0008 2.7E-08 59.8 18.0 174 49-226 43-244 (567)
193 1klx_A Cysteine rich protein B 97.9 0.00025 8.4E-09 50.3 11.9 111 118-239 10-128 (138)
194 2if4_A ATFKBP42; FKBP-like, al 97.9 2.3E-05 7.7E-10 65.0 7.3 129 105-237 181-328 (338)
195 2hr2_A Hypothetical protein; a 97.9 0.00022 7.5E-09 51.4 11.4 61 175-236 59-130 (159)
196 3n71_A Histone lysine methyltr 97.9 5.3E-05 1.8E-09 65.8 9.3 97 105-201 353-463 (490)
197 1klx_A Cysteine rich protein B 97.9 0.0011 3.8E-08 46.8 14.5 111 83-203 8-127 (138)
198 2hr2_A Hypothetical protein; a 97.8 0.00024 8.1E-09 51.2 10.5 61 245-305 59-129 (159)
199 2l6j_A TPR repeat-containing p 97.8 3E-05 1E-09 52.3 5.2 63 173-236 4-66 (111)
200 2kat_A Uncharacterized protein 97.7 0.00026 8.9E-09 48.1 9.2 78 157-236 4-81 (115)
201 2kat_A Uncharacterized protein 97.7 0.00022 7.5E-09 48.5 8.7 81 190-272 2-82 (115)
202 1na3_A Designed protein CTPR2; 97.6 0.0012 4.1E-08 42.3 10.9 62 174-236 10-71 (91)
203 2l6j_A TPR repeat-containing p 97.6 0.00034 1.2E-08 46.9 8.3 62 104-166 5-66 (111)
204 3ma5_A Tetratricopeptide repea 97.6 0.00044 1.5E-08 45.8 8.6 63 172-235 6-68 (100)
205 1na3_A Designed protein CTPR2; 97.6 0.001 3.4E-08 42.7 10.1 61 141-202 12-72 (91)
206 1zu2_A Mitochondrial import re 97.5 0.00026 8.8E-09 50.9 6.2 97 47-146 14-132 (158)
207 1zu2_A Mitochondrial import re 97.5 0.0005 1.7E-08 49.4 7.6 100 79-181 11-132 (158)
208 3ma5_A Tetratricopeptide repea 97.3 0.0014 4.8E-08 43.3 7.9 62 103-165 7-68 (100)
209 3mkq_A Coatomer beta'-subunit; 97.2 0.015 5.1E-07 53.9 16.4 133 106-271 632-764 (814)
210 3qww_A SET and MYND domain-con 97.0 0.0014 4.7E-08 56.0 7.1 61 105-165 342-409 (433)
211 3qww_A SET and MYND domain-con 97.0 0.0033 1.1E-07 53.7 9.3 86 220-305 310-409 (433)
212 3qwp_A SET and MYND domain-con 97.0 0.0051 1.7E-07 52.5 10.2 91 215-305 294-398 (429)
213 3ly7_A Transcriptional activat 97.0 0.013 4.5E-07 48.3 12.0 71 207-281 276-346 (372)
214 3qwp_A SET and MYND domain-con 96.9 0.0039 1.3E-07 53.3 8.8 85 81-165 298-398 (429)
215 3mkq_A Coatomer beta'-subunit; 96.9 0.043 1.5E-06 50.9 16.4 153 45-234 609-762 (814)
216 3ly7_A Transcriptional activat 96.9 0.039 1.3E-06 45.5 14.0 74 170-247 274-347 (372)
217 2kc7_A BFR218_protein; tetratr 96.8 0.013 4.5E-07 38.0 9.0 55 181-236 8-63 (99)
218 1wy6_A Hypothetical protein ST 96.6 0.091 3.1E-06 36.3 14.1 140 150-311 19-158 (172)
219 2kc7_A BFR218_protein; tetratr 96.5 0.015 5.2E-07 37.7 7.8 57 146-203 8-65 (99)
220 3mkq_B Coatomer subunit alpha; 96.5 0.15 5.2E-06 37.1 14.1 44 115-164 17-60 (177)
221 3bee_A Putative YFRE protein; 96.4 0.089 3E-06 33.9 10.9 65 172-237 5-72 (93)
222 3mkq_B Coatomer subunit alpha; 96.3 0.12 3.9E-06 37.8 12.1 102 79-199 14-115 (177)
223 1pc2_A Mitochondria fission pr 96.3 0.0094 3.2E-07 42.4 6.2 82 189-272 14-100 (152)
224 1pc2_A Mitochondria fission pr 96.2 0.081 2.8E-06 37.6 10.2 87 152-242 12-103 (152)
225 2v5f_A Prolyl 4-hydroxylase su 96.1 0.08 2.7E-06 34.9 9.6 26 175-200 48-73 (104)
226 3u64_A Protein TP_0956; tetrat 95.9 0.12 4E-06 41.1 11.0 88 83-170 176-272 (301)
227 3bee_A Putative YFRE protein; 95.8 0.096 3.3E-06 33.8 8.7 48 154-202 25-72 (93)
228 2v5f_A Prolyl 4-hydroxylase su 95.6 0.13 4.5E-06 33.8 8.9 64 173-236 5-74 (104)
229 3u64_A Protein TP_0956; tetrat 95.5 0.21 7.2E-06 39.7 11.0 92 154-247 179-281 (301)
230 1nzn_A CGI-135 protein, fissio 95.5 0.084 2.9E-06 36.1 7.6 22 284-305 80-101 (126)
231 2ff4_A Probable regulatory pro 95.3 0.075 2.6E-06 44.6 8.6 76 246-322 174-254 (388)
232 1wy6_A Hypothetical protein ST 94.9 0.6 2.1E-05 32.3 13.5 65 174-239 92-156 (172)
233 2ff4_A Probable regulatory pro 94.6 0.23 7.7E-06 41.7 9.7 70 176-246 174-248 (388)
234 4gns_B Protein CSD3, chitin bi 94.6 0.16 5.4E-06 46.4 9.1 128 177-305 252-398 (754)
235 4h7y_A Dual specificity protei 94.3 0.38 1.3E-05 33.9 8.4 102 172-275 12-126 (161)
236 4h7y_A Dual specificity protei 94.1 1 3.5E-05 31.8 10.7 35 102-137 12-52 (161)
237 1nzn_A CGI-135 protein, fissio 94.0 0.63 2.2E-05 31.8 8.9 67 136-202 33-103 (126)
238 1v54_E Cytochrome C oxidase po 93.7 0.88 3E-05 29.5 8.9 50 153-202 25-74 (109)
239 3eiq_C Programmed cell death p 93.6 2.3 8E-05 35.0 13.4 77 245-322 219-297 (358)
240 1v54_E Cytochrome C oxidase po 93.3 0.54 1.8E-05 30.5 7.1 48 16-63 26-73 (109)
241 4gns_B Protein CSD3, chitin bi 92.3 1.2 4.2E-05 40.7 10.8 53 181-234 345-397 (754)
242 2y69_E Cytochrome C oxidase su 92.2 1.9 6.4E-05 29.7 8.9 62 153-215 68-129 (152)
243 3lvg_A Clathrin heavy chain 1; 91.7 8.3E-05 2.8E-09 62.9 -15.2 240 38-303 57-316 (624)
244 3o48_A Mitochondria fission 1 91.6 1.8 6.2E-05 29.7 8.6 70 203-272 35-107 (134)
245 4fhn_B Nucleoporin NUP120; pro 91.3 3.5 0.00012 40.0 13.4 188 109-304 818-1047(1139)
246 2zu6_B Programmed cell death p 91.1 2.7 9.2E-05 33.8 10.6 76 246-322 169-246 (307)
247 2y69_E Cytochrome C oxidase su 91.1 1.2 4.1E-05 30.6 7.1 82 32-113 49-132 (152)
248 4b4t_P 26S proteasome regulato 90.9 6.9 0.00024 33.4 19.2 257 11-269 30-321 (445)
249 2nsz_A Programmed cell death p 90.4 2.8 9.7E-05 28.7 8.9 71 249-320 13-85 (129)
250 1y8m_A FIS1; mitochondria, unk 89.9 3.6 0.00012 28.6 9.4 68 205-272 36-106 (144)
251 4ady_A RPN2, 26S proteasome re 89.7 10 0.00036 35.6 14.3 150 148-305 500-656 (963)
252 2ion_A PDCD4, programmed cell 88.1 2.9 0.0001 29.6 7.8 25 211-235 12-36 (152)
253 1zbp_A Hypothetical protein VP 87.3 2.7 9.3E-05 32.8 7.6 52 149-201 8-59 (273)
254 3ffl_A Anaphase-promoting comp 86.5 3.6 0.00012 29.5 7.4 119 176-307 23-151 (167)
255 4b4t_P 26S proteasome regulato 86.1 15 0.00052 31.3 22.5 256 49-304 30-321 (445)
256 3lvg_A Clathrin heavy chain 1; 85.6 0.018 6.3E-07 49.1 -5.5 213 69-301 53-285 (624)
257 4fhn_B Nucleoporin NUP120; pro 85.3 25 0.00087 34.1 14.9 186 76-269 818-1047(1139)
258 4b4t_R RPN7, 26S proteasome re 84.3 9.2 0.00031 32.4 10.3 61 140-200 133-195 (429)
259 4a1g_A Mitotic checkpoint seri 83.8 5.9 0.0002 28.0 7.4 59 262-320 84-143 (152)
260 4b4t_R RPN7, 26S proteasome re 83.6 11 0.00038 31.9 10.6 96 105-202 133-237 (429)
261 3txn_A 26S proteasome regulato 82.5 20 0.0007 29.9 16.7 163 37-199 21-207 (394)
262 3esl_A Checkpoint serine/threo 81.5 14 0.00049 27.4 11.7 53 224-276 95-148 (202)
263 1zbp_A Hypothetical protein VP 81.2 6.1 0.00021 30.9 7.2 55 112-167 6-60 (273)
264 3eu9_A Huntingtin-interacting 80.5 2.9 0.0001 31.6 5.5 47 44-94 15-63 (240)
265 2wvi_A Mitotic checkpoint seri 79.5 7.5 0.00026 27.9 6.7 39 280-318 98-136 (164)
266 1k1a_A B-cell lymphoma 3-encod 78.8 7.7 0.00026 29.3 7.4 22 113-134 16-37 (241)
267 1qsa_A Protein (soluble lytic 78.4 37 0.0013 30.4 19.4 222 75-306 77-347 (618)
268 3esl_A Checkpoint serine/threo 78.1 19 0.00064 26.8 10.2 53 189-241 95-148 (202)
269 2p58_C Putative type III secre 77.3 12 0.00042 24.2 8.8 50 218-273 50-99 (116)
270 2d2s_A Exocyst complex compone 76.9 17 0.00059 27.8 8.6 22 179-200 24-45 (235)
271 2d2s_A Exocyst complex compone 76.8 23 0.00079 27.1 10.0 90 40-130 23-118 (235)
272 1k1a_A B-cell lymphoma 3-encod 76.5 7.5 0.00026 29.3 6.7 28 42-69 13-40 (241)
273 2zu6_B Programmed cell death p 75.8 29 0.001 27.8 11.4 26 38-63 6-31 (307)
274 4ady_A RPN2, 26S proteasome re 74.7 59 0.002 30.8 16.3 235 52-293 471-721 (963)
275 1wdy_A 2-5A-dependent ribonucl 74.7 22 0.00074 27.4 9.2 208 76-301 8-239 (285)
276 2wpv_A GET4, UPF0363 protein Y 74.6 32 0.0011 27.7 14.6 183 119-320 13-215 (312)
277 1wdy_A 2-5A-dependent ribonucl 74.3 7.9 0.00027 30.0 6.5 210 40-267 7-240 (285)
278 3kea_A K1L; tropism, ANK repea 73.1 9.1 0.00031 30.1 6.6 47 43-93 36-82 (285)
279 3o48_A Mitochondria fission 1 72.2 21 0.00071 24.5 11.0 68 169-236 36-106 (134)
280 2uwj_G Type III export protein 72.1 17 0.00059 23.5 7.7 18 255-272 80-97 (115)
281 3ffl_A Anaphase-promoting comp 71.5 25 0.00086 25.2 8.9 59 141-199 23-89 (167)
282 2rg8_A Programmed cell death p 71.2 18 0.00062 25.9 7.1 25 211-235 13-37 (165)
283 2wpv_A GET4, UPF0363 protein Y 71.1 39 0.0013 27.2 17.3 112 72-196 35-157 (312)
284 4aez_C MAD3, mitotic spindle c 70.2 12 0.00042 28.3 6.1 50 226-275 132-182 (223)
285 2wvi_A Mitotic checkpoint seri 69.8 25 0.00085 25.2 7.4 51 192-242 79-130 (164)
286 1ug3_A EIF4GI, eukaryotic prot 69.6 41 0.0014 27.3 9.8 25 38-62 14-38 (339)
287 3eiq_C Programmed cell death p 68.0 49 0.0017 27.2 14.9 26 38-63 57-82 (358)
288 3b7b_A Euchromatic histone-lys 66.9 9.7 0.00033 28.7 5.3 54 250-307 181-236 (237)
289 2uwj_G Type III export protein 66.7 23 0.00079 22.9 9.2 91 221-319 19-109 (115)
290 3eu9_A Huntingtin-interacting 66.4 4.6 0.00016 30.4 3.4 209 79-307 15-236 (240)
291 2p58_C Putative type III secre 65.4 25 0.00085 22.8 10.0 91 221-319 20-110 (116)
292 3lpz_A GET4 (YOR164C homolog); 64.6 56 0.0019 26.6 19.8 134 72-222 37-181 (336)
293 1y8m_A FIS1; mitochondria, unk 64.4 33 0.0011 23.9 11.0 21 182-202 86-106 (144)
294 2nsz_A Programmed cell death p 64.4 31 0.001 23.5 7.9 21 179-199 13-33 (129)
295 2xig_A Ferric uptake regulatio 64.2 34 0.0012 23.9 8.5 58 164-222 18-75 (150)
296 1mzb_A Ferric uptake regulatio 62.3 34 0.0012 23.3 7.0 32 188-219 33-64 (136)
297 2ion_A PDCD4, programmed cell 61.9 29 0.001 24.4 6.5 24 142-165 13-36 (152)
298 2rfa_A Transient receptor pote 61.6 33 0.0011 25.5 7.5 51 42-95 7-59 (232)
299 2fe3_A Peroxide operon regulat 60.7 39 0.0013 23.4 8.3 58 164-222 13-70 (145)
300 4aez_C MAD3, mitotic spindle c 60.0 35 0.0012 25.8 6.9 53 190-242 131-184 (223)
301 3eyy_A Putative iron uptake re 59.8 35 0.0012 23.7 6.6 57 164-222 10-66 (145)
302 3lpz_A GET4 (YOR164C homolog); 59.4 70 0.0024 26.0 21.1 168 105-306 37-215 (336)
303 2xig_A Ferric uptake regulatio 59.1 43 0.0015 23.4 7.5 64 196-260 15-78 (150)
304 4a1g_A Mitotic checkpoint seri 58.9 44 0.0015 23.5 9.6 53 190-242 82-135 (152)
305 3aji_A 26S proteasome non-ATPa 58.7 20 0.00069 26.7 5.8 19 42-60 10-28 (231)
306 3l6a_A Eukaryotic translation 58.5 43 0.0015 27.6 7.9 24 211-234 15-38 (364)
307 2fe3_A Peroxide operon regulat 58.5 43 0.0015 23.2 7.0 62 197-259 11-72 (145)
308 2w57_A Ferric uptake regulatio 58.0 41 0.0014 23.4 6.8 32 189-220 33-64 (150)
309 2r9g_A AAA ATPase, central reg 57.3 56 0.0019 24.2 9.9 35 152-187 28-62 (204)
310 1ug3_A EIF4GI, eukaryotic prot 57.1 21 0.00073 29.0 5.9 24 211-234 14-37 (339)
311 3bge_A Predicted ATPase; struc 56.1 59 0.002 24.0 9.0 33 152-184 21-53 (201)
312 4ets_A Ferric uptake regulatio 56.0 37 0.0013 24.1 6.3 45 178-222 37-83 (162)
313 3hra_A Ankyrin repeat family p 56.0 32 0.0011 24.8 6.4 14 113-126 12-25 (201)
314 3ltm_A Alpha-REP4; protein eng 55.6 58 0.002 23.8 15.4 17 172-188 125-141 (211)
315 3kea_A K1L; tropism, ANK repea 55.0 19 0.00064 28.3 5.1 203 76-303 34-243 (285)
316 2fu4_A Ferric uptake regulatio 54.3 34 0.0012 20.7 7.1 32 189-220 33-64 (83)
317 2w57_A Ferric uptake regulatio 54.2 48 0.0016 23.1 6.6 63 127-190 6-69 (150)
318 3t8k_A Uncharacterized protein 54.0 35 0.0012 24.7 6.1 15 227-241 93-107 (186)
319 3jxi_A Vanilloid receptor-rela 53.9 3.6 0.00012 31.7 0.7 29 42-70 9-37 (260)
320 1mzb_A Ferric uptake regulatio 53.0 42 0.0014 22.9 6.0 62 198-260 8-70 (136)
321 2o03_A Probable zinc uptake re 52.4 39 0.0013 22.9 5.8 44 179-222 16-59 (131)
322 3jxi_A Vanilloid receptor-rela 52.3 4.5 0.00015 31.2 1.1 55 110-164 9-72 (260)
323 3ctd_A Putative ATPase, AAA fa 50.1 78 0.0027 23.7 9.8 54 116-169 48-106 (213)
324 1oyz_A Hypothetical protein YI 49.9 86 0.0029 24.1 18.9 122 171-306 140-262 (280)
325 3aji_A 26S proteasome non-ATPa 49.1 37 0.0013 25.1 5.9 171 77-267 10-193 (231)
326 3hra_A Ankyrin repeat family p 49.0 22 0.00076 25.7 4.5 14 45-58 12-25 (201)
327 3mwm_A ZUR, putative metal upt 48.1 37 0.0013 23.3 5.1 41 180-220 20-60 (139)
328 2r9g_A AAA ATPase, central reg 47.7 83 0.0028 23.3 9.3 35 115-150 26-60 (204)
329 4g8k_A 2-5A-dependent ribonucl 47.2 54 0.0018 26.2 6.9 97 159-267 220-322 (337)
330 2b7e_A PRE-mRNA processing pro 46.9 15 0.00051 21.1 2.3 32 225-256 3-35 (59)
331 1zl8_A LIN-7; heterodimer, alp 46.1 31 0.001 18.9 3.3 26 292-317 7-32 (53)
332 1wgl_A TOLL-interacting protei 46.0 16 0.00056 20.9 2.5 22 116-137 36-57 (59)
333 3eyy_A Putative iron uptake re 46.0 46 0.0016 23.1 5.4 61 197-259 8-68 (145)
334 4ets_A Ferric uptake regulatio 45.7 71 0.0024 22.6 6.4 70 120-190 14-86 (162)
335 2fu4_A Ferric uptake regulatio 45.7 48 0.0016 20.0 6.4 62 127-189 6-68 (83)
336 3bge_A Predicted ATPase; struc 44.5 93 0.0032 23.0 8.0 41 108-148 9-52 (201)
337 1bd8_A P19INK4D CDK4/6 inhibit 44.2 24 0.00083 24.2 3.8 19 42-60 6-24 (156)
338 1oai_A Nuclear RNA export fact 43.9 18 0.00063 20.7 2.5 23 292-314 34-56 (59)
339 4gq2_M Nucleoporin NUP120; bet 43.1 1.1E+02 0.0039 29.0 9.1 51 179-234 816-866 (950)
340 3kae_A CDC27, possible protein 41.7 99 0.0034 22.5 7.6 36 274-309 202-239 (242)
341 3ltj_A Alpharep-4; protein eng 41.7 96 0.0033 22.3 16.4 80 136-223 88-167 (201)
342 1n11_A Ankyrin; clathrin, BAND 41.2 69 0.0023 26.7 6.8 14 253-266 252-265 (437)
343 3e3v_A Regulatory protein RECX 40.9 99 0.0034 22.3 11.0 50 155-205 50-99 (177)
344 3ygs_P Procaspase 9; apoptosis 40.0 71 0.0024 20.3 6.8 13 224-236 53-65 (97)
345 4fke_A Aminopeptidase N; zinc 38.9 2.6E+02 0.0088 26.4 18.2 156 142-305 690-858 (909)
346 2ijq_A Hypothetical protein; s 38.2 1.1E+02 0.0036 21.8 7.9 60 106-166 36-103 (161)
347 2rfa_A Transient receptor pote 37.6 68 0.0023 23.7 5.7 14 81-94 11-24 (232)
348 3twr_A Tankyrase-2; ankyrin re 37.4 60 0.002 22.4 5.1 13 254-266 116-128 (165)
349 3f3f_C Nucleoporin NUP85; stru 37.1 66 0.0023 28.3 5.9 86 105-192 481-568 (570)
350 3mwm_A ZUR, putative metal upt 37.1 47 0.0016 22.8 4.2 51 210-260 15-65 (139)
351 3t8k_A Uncharacterized protein 36.7 1.2E+02 0.004 21.8 6.7 28 110-137 42-69 (186)
352 2yru_A Steroid receptor RNA ac 36.7 76 0.0026 21.2 5.0 17 184-200 72-88 (118)
353 3ljn_A Hypothetical protein; a 36.5 1.1E+02 0.0036 24.7 7.1 190 101-311 16-237 (364)
354 3ljn_A Hypothetical protein; a 35.3 1.6E+02 0.0056 23.6 8.1 216 69-302 17-265 (364)
355 2p1h_A APAF-1, apoptotic prote 35.1 82 0.0028 19.7 6.7 33 222-258 50-82 (94)
356 3ctd_A Putative ATPase, AAA fa 35.0 1.4E+02 0.0048 22.3 8.6 65 141-205 35-107 (213)
357 3pvs_A Replication-associated 34.8 2.1E+02 0.0072 24.3 10.6 55 220-274 267-326 (447)
358 3ltm_A Alpha-REP4; protein eng 34.8 1.3E+02 0.0044 21.8 16.6 142 101-258 31-172 (211)
359 3l6a_A Eukaryotic translation 34.3 1.9E+02 0.0066 23.7 11.6 26 73-98 15-40 (364)
360 3txn_A 26S proteasome regulato 34.1 2E+02 0.007 23.9 19.6 261 35-309 58-345 (394)
361 3ygs_P Procaspase 9; apoptosis 33.8 91 0.0031 19.8 6.5 65 229-299 25-89 (97)
362 2o03_A Probable zinc uptake re 33.8 67 0.0023 21.7 4.6 48 212-259 14-61 (131)
363 2yru_A Steroid receptor RNA ac 32.8 1.1E+02 0.0036 20.5 5.2 18 218-235 71-88 (118)
364 3c1d_A Protein ORAA, regulator 32.7 1.3E+02 0.0044 21.2 12.5 50 154-205 46-95 (159)
365 4fke_A Aminopeptidase N; zinc 32.0 3.3E+02 0.011 25.7 16.0 147 106-258 689-846 (909)
366 3m6y_A 4-hydroxy-2-oxoglutarat 31.5 71 0.0024 24.5 4.5 82 85-166 169-269 (275)
367 2etb_A Transient receptor pote 31.2 78 0.0027 23.9 5.2 16 252-267 142-157 (256)
368 3f3f_C Nucleoporin NUP85; stru 31.2 2.4E+02 0.0083 24.8 8.4 75 187-263 495-569 (570)
369 2ijq_A Hypothetical protein; s 30.7 1.4E+02 0.0049 21.1 8.0 52 185-236 44-103 (161)
370 2etb_A Transient receptor pote 30.3 51 0.0017 25.0 4.0 117 109-231 5-156 (256)
371 3rjo_A Endoplasmic reticulum a 29.9 2.4E+02 0.0083 23.5 17.9 90 142-238 201-297 (419)
372 4g8k_A 2-5A-dependent ribonucl 28.9 1.7E+02 0.0057 23.2 7.0 147 147-312 174-328 (337)
373 3pvs_A Replication-associated 28.6 2.7E+02 0.0092 23.6 12.4 55 185-239 267-326 (447)
374 1bd8_A P19INK4D CDK4/6 inhibit 28.2 72 0.0024 21.7 4.1 17 112-128 8-24 (156)
375 1n11_A Ankyrin; clathrin, BAND 28.1 2E+02 0.0068 23.8 7.6 19 250-268 282-300 (437)
376 1jog_A Hypothetical protein HI 28.1 1.1E+02 0.0039 21.2 5.0 40 224-263 54-97 (146)
377 3rjo_A Endoplasmic reticulum a 27.8 2.7E+02 0.0091 23.2 17.0 155 105-268 199-369 (419)
378 3m0z_A Putative aldolase; MCSG 27.5 71 0.0024 24.2 3.9 82 85-166 146-246 (249)
379 2f6m_A Suppressor protein STP2 27.1 99 0.0034 18.1 3.9 25 179-203 8-32 (65)
380 4b4t_S RPN3, 26S proteasome re 27.0 3.2E+02 0.011 23.9 11.5 65 138-202 231-299 (523)
381 2dzn_A Probable 26S proteasome 26.6 1.7E+02 0.0059 21.2 6.4 14 253-266 147-160 (228)
382 3qil_A Clathrin heavy chain 1; 26.6 1E+02 0.0034 20.7 4.1 52 141-195 35-86 (125)
383 2qfz_A TBC1 domain family memb 25.3 1.8E+02 0.0062 23.5 6.6 41 198-238 234-274 (345)
384 3ltj_A Alpharep-4; protein eng 25.1 1.9E+02 0.0065 20.6 17.5 111 101-223 26-136 (201)
385 2xdt_A Endoplasmic reticulum a 24.8 4.4E+02 0.015 24.8 16.2 152 142-303 684-852 (897)
386 2rg8_A Programmed cell death p 24.1 2E+02 0.0067 20.4 7.7 68 175-245 12-81 (165)
387 3qil_A Clathrin heavy chain 1; 23.8 1E+02 0.0036 20.7 3.8 52 211-265 35-86 (125)
388 2crb_A Nuclear receptor bindin 23.3 1E+02 0.0034 19.5 3.4 21 281-301 18-38 (97)
389 3c1d_A Protein ORAA, regulator 22.5 2E+02 0.007 20.1 10.6 52 118-171 45-96 (159)
390 3qye_A TBC1 domain family memb 22.3 3E+02 0.01 22.0 10.1 143 109-258 155-309 (331)
391 2f8y_A Notch homolog 1, transl 21.7 2.3E+02 0.0079 20.4 7.2 18 251-268 163-180 (223)
392 2br9_A 14-3-3E, 14-3-3 protein 21.2 2.8E+02 0.0095 21.1 7.5 62 209-270 6-68 (234)
393 2keb_A DNA polymerase subunit 21.1 1.7E+02 0.0059 18.7 7.1 27 159-185 30-56 (101)
394 1s6c_A KV4 potassium channel-i 20.6 2.2E+02 0.0076 19.8 12.0 46 16-62 20-66 (183)
395 2dzn_A Probable 26S proteasome 20.6 1.2E+02 0.004 22.2 4.3 19 110-128 6-24 (228)
396 2dhy_A CUE domain-containing p 20.4 1.4E+02 0.0049 17.5 4.5 16 116-131 45-60 (67)
397 2qq8_A TBC1 domain family memb 20.3 2.4E+02 0.0082 22.7 6.2 44 195-238 215-258 (334)
398 1oyz_A Hypothetical protein YI 20.2 2.9E+02 0.01 21.0 21.7 217 33-270 35-261 (280)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.7e-37 Score=267.46 Aligned_cols=188 Identities=15% Similarity=0.191 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCc---------HHHHHHHHHHHHhCCCCCCHH
Q 038109 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR---------MEEAWGLMEVMKEIRVSPDLT 174 (324)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~ 174 (324)
..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. .+.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 36888899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 254 (324)
|||++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCc
Q 038109 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL 291 (324)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (324)
+.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998864
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.9e-36 Score=261.58 Aligned_cols=201 Identities=14% Similarity=0.102 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------h
Q 038109 120 DEALRVVDIMAEGGFGLSA-ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN---------L 189 (324)
Q Consensus 120 ~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---------~ 189 (324)
..+..+.+++.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..|||++|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4566677788887776544 46889999999999999999999999999999999999999999998765 6
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 190 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
+.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHHHHHh
Q 038109 270 GGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYE 320 (324)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 320 (324)
.+.|+.||..+|++||.+|++.|++++|.++|++|++.|+.|+..+...+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999888766553
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.3e-28 Score=219.87 Aligned_cols=296 Identities=12% Similarity=-0.030 Sum_probs=261.4
Q ss_pred cccCCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhh
Q 038109 4 LRKLPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSL 83 (324)
Q Consensus 4 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 83 (324)
...+.+.|.+++|..+++.+... .++..+|+.++..+.+.|++++|.++|+++.+.+ +.+..++..++.++.+.
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL-----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHES 352 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG-----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC-----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHh
Confidence 34455666667777666554433 4889999999999999999999999999999764 55778999999999999
Q ss_pred hhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHH
Q 038109 84 SVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLME 162 (324)
Q Consensus 84 ~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 162 (324)
|++++|..+++.+.+..| +..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++..+.+.|++++|.++|+
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999976666 67799999999999999999999999998753 2367899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C
Q 038109 163 VMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD----G 238 (324)
Q Consensus 163 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~ 238 (324)
++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +
T Consensus 432 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 432 TAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 999875 347899999999999999999999999999987554 8899999999999999999999999999876 6
Q ss_pred CCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q 038109 239 QSVL--YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309 (324)
Q Consensus 239 ~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 309 (324)
..|+ ..+|..+..+|.+.|++++|..+++.+.+.+ +.+..+|..+..+|.+.|++++|.++|+++.+.+-
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 6787 7899999999999999999999999998765 34889999999999999999999999999987543
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.5e-27 Score=214.69 Aligned_cols=301 Identities=7% Similarity=-0.053 Sum_probs=254.1
Q ss_pred cCCCCccchhHHHHHHHHhhhc------------CCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchh-
Q 038109 6 KLPTKFLIPQSVLVTRSFTKSG------------AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANT- 72 (324)
Q Consensus 6 ~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~- 72 (324)
.+.+.|++++|..+++...... ..+..++..+|+.++.++.+.|++++|.++|++|.+.+ +.+...
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 3445677777777766211100 11234568899999999999999999999999998753 222222
Q ss_pred -------------------------------------hHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038109 73 -------------------------------------FNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCK 115 (324)
Q Consensus 73 -------------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~ 115 (324)
|+.++..|.+.|++++|.++|+++.+..++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 3444788899999999999999987665788999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 038109 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 195 (324)
.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999998654 378899999999999999999999999998654 45789999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCC
Q 038109 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275 (324)
Q Consensus 196 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (324)
|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.++|+.+.+.. +
T Consensus 396 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 9999886544 78899999999999999999999999998764 3577899999999999999999999999998764 3
Q ss_pred cCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC----CCchh
Q 038109 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKR----DLKMG 312 (324)
Q Consensus 276 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~ 312 (324)
.++.+|..++..|.+.|++++|.++|+++.+. +..|+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 47899999999999999999999999999776 55665
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=3.1e-22 Score=170.61 Aligned_cols=266 Identities=14% Similarity=-0.004 Sum_probs=185.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHc
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCK 115 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~ 115 (324)
.|..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+..| +..+|..+...+..
T Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 181 (388)
T 1w3b_A 103 GYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45555555555555555555555554431 22223444455555555666666666666554444 34466666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 038109 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 195 (324)
.|++++|.+.|+++.+... -+...|..+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|...
T Consensus 182 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666665432 234556666666666666667766666665543 22567788888888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCC
Q 038109 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275 (324)
Q Consensus 196 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (324)
|+++.+.++. +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++.+.+.. +
T Consensus 260 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 336 (388)
T 1w3b_A 260 YRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-P 336 (388)
T ss_dssp HHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-T
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 9988887554 67788888999999999999999999888653 4567888888889999999999999999988764 3
Q ss_pred cCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 276 LDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 276 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
.+..++..+...|.+.|++++|.+.++++.+..
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467788889999999999999999999887643
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=9.5e-22 Score=167.57 Aligned_cols=268 Identities=13% Similarity=0.008 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Q 038109 34 TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGR 112 (324)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~ 112 (324)
+...|..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.++++.+..|+ ...+..+...
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44455555566666666666666666655431 222344555566666666666666666655544443 3345555566
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhH
Q 038109 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 192 (324)
+...|++++|.+.|+++.+... -+..+|..+...+.+.|++++|...|+++.+.+. .+...+..+...+...|++++|
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666665421 2455666666666666777777777766666432 2455666666777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 193 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
...|++.....+. +..++..+..+|.+.|++++|.+.|+++.+... .+..++..+...+.+.|++++|...++.+.+.
T Consensus 223 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 223 VAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777766665433 577888888889999999999999988887532 34667888888899999999999999888776
Q ss_pred CCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 273 DIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 273 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
. +.+..++..+...+.+.|++++|.+.++++.+.
T Consensus 301 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 301 C-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4 457888888999999999999999999988764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=6.2e-21 Score=165.59 Aligned_cols=290 Identities=9% Similarity=-0.006 Sum_probs=239.8
Q ss_pred CCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhH
Q 038109 7 LPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86 (324)
Q Consensus 7 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (324)
+...|++++|...++...... +.+...|..+..++...|++++|.+.++++.+.+ +.+...+..+..++.+.|++
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGD----PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 345677888888888776654 2457789999999999999999999999998864 45567888999999999999
Q ss_pred HHHHHHHHHHhcCCCCH----HHHHHH------------HHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 038109 87 SDLCRTLARLDKGFPRK----SAYDTL------------IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150 (324)
Q Consensus 87 ~~a~~~~~~~~~~~p~~----~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 150 (324)
++|...|+++.+..|+. .++..+ ...+...|++++|+..|+++.+.. +.+..++..+...+.+
T Consensus 111 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 99999999998877754 455555 444889999999999999998753 3377888999999999
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH------------HHHH
Q 038109 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL------------VLGA 218 (324)
Q Consensus 151 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------i~~~ 218 (324)
.|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++...... +...+..+ ...+
T Consensus 190 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~ 267 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEEL 267 (450)
T ss_dssp TTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988764 346889999999999999999999999999876443 45555555 7889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCC
Q 038109 219 CRAGRVEEAFVLLRRMVDDGQSVL-----YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER 293 (324)
Q Consensus 219 ~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 293 (324)
.+.|++++|.+.|+++.+.. |+ ...+..+...+.+.|++++|...++.+.+.. +.+...|..+..+|...|+
T Consensus 268 ~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 268 IRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcC
Confidence 99999999999999998643 44 4477888899999999999999999887653 3368889999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 038109 294 FNEANFILKEMNKR 307 (324)
Q Consensus 294 ~~~a~~~~~~m~~~ 307 (324)
+++|.+.+++..+.
T Consensus 345 ~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 345 YDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=3e-20 Score=161.27 Aligned_cols=268 Identities=12% Similarity=-0.021 Sum_probs=227.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHH
Q 038109 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIG 111 (324)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~ 111 (324)
.+...+..+...+.+.|++++|.++|+.+.+. .+.+..++..+..++...|++++|...++++.+..| +..+|..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 45677899999999999999999999999875 356678999999999999999999999999977666 5679999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCh---hhHHHHH------------HHHHccCcHHHHHHHHHHHHhCCCCCCHHHH
Q 038109 112 RLCKLKKIDEALRVVDIMAEGGFGLSA---ITFHPIL------------SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAY 176 (324)
Q Consensus 112 ~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 176 (324)
.|.+.|++++|.+.|+++.+.... +. ..+..+. ..+.+.|++++|...++++.+.. +.+..++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999999985322 33 5555553 44889999999999999998864 3478889
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHH------
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL-YSTYAHV------ 249 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l------ 249 (324)
..+..+|.+.|++++|...|+++.+.... +..+|..+...|...|++++|...|+++.... |+ ...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHH
Confidence 99999999999999999999999876544 78999999999999999999999999998653 43 3334333
Q ss_pred ------HHHHHhcCCHHHHHHHHHHhCCCCCCcC-----HhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 250 ------MGALLRLGYYAQAVKFVMVCGGRDIKLD-----TELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 250 ------i~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
...+...|++++|..+++.+.+.. |+ ...|..+...+.+.|++++|...++++.+..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 788999999999999999987753 33 4578889999999999999999999987653
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=180.98 Aligned_cols=151 Identities=16% Similarity=0.093 Sum_probs=118.3
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 038109 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKE---IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDA 213 (324)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 213 (324)
-..||+++|++|++.|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999887764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcC------HhHHHHHHH
Q 038109 214 LVLGACRAGR-VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD------TELFGSLGS 286 (324)
Q Consensus 214 li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 286 (324)
+|.++++.|+ .++|.++|++|.+.|+.||..||++++.++.+.+ +++.++.+ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 4788899999998899999999998887766553 33334444 2334443 445555666
Q ss_pred HHhCcC
Q 038109 287 KLIGLE 292 (324)
Q Consensus 287 ~~~~~g 292 (324)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 776654
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.6e-19 Score=149.90 Aligned_cols=272 Identities=10% Similarity=-0.027 Sum_probs=231.3
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHH
Q 038109 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLI 110 (324)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li 110 (324)
..+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|...++++.+..| +..+|..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3444557888888999999999999999998763 45566777788999999999999999999977666 566899999
Q ss_pred HHHHccC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 038109 111 GRLCKLK-KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189 (324)
Q Consensus 111 ~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 189 (324)
..+...| ++++|.+.|++..+... .+...|..+...+...|++++|...+++..+... .+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 9999999 99999999999988643 3577889999999999999999999999988653 3456777799999999999
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCcCHHHHHHHHHHHHhcCCHHH
Q 038109 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG--------QSVLYSTYAHVMGALLRLGYYAQ 261 (324)
Q Consensus 190 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 261 (324)
++|...+++..+.... +...+..+...+...|++++|...+++..+.. ...+..++..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999987654 78899999999999999999999999887631 12345788889999999999999
Q ss_pred HHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
|...++...+... .+...+..+...|.+.|++++|.+.+++..+..
T Consensus 255 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 255 ALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999887643 367888999999999999999999999887554
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=4.5e-20 Score=155.87 Aligned_cols=266 Identities=14% Similarity=0.042 Sum_probs=221.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 038109 34 TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGR 112 (324)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~ 112 (324)
+...+..+...+.+.|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+..| +..++..+...
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557888889999999999999999999863 55678899999999999999999999999977666 67799999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChhhHHH---------------HHHHHHccCcHHHHHHHHHHHHhCCCCC-CHHHH
Q 038109 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHP---------------ILSVLTRGKRMEEAWGLMEVMKEIRVSP-DLTAY 176 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~ 176 (324)
+...|++++|.+.++++.+.... +...+.. .+..+...|++++|...++++.+..... +..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999999986433 2222221 2344448899999999999998864321 57889
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 256 (324)
..+...|...|++++|...|++..+.... +..+|..+...+...|++++|...|++..+.. +.+..++..+...+.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 99999999999999999999999887544 68899999999999999999999999988753 24567888899999999
Q ss_pred CCHHHHHHHHHHhCCCCCCc----------CHhHHHHHHHHHhCcCCHHHHHHHHHH
Q 038109 257 GYYAQAVKFVMVCGGRDIKL----------DTELFGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 257 g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
|++++|...++...+..... ...+|..+..+|.+.|+.++|..++++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999998886643221 268899999999999999999988763
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=5.3e-18 Score=142.28 Aligned_cols=292 Identities=10% Similarity=0.007 Sum_probs=242.3
Q ss_pred CCCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhH
Q 038109 7 LPTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL 86 (324)
Q Consensus 7 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (324)
+...|++++|...++....... .+...|..+...+...|++++|...++.+.+.. +.+...+..+..++...|++
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGDP----DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHhhCc----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCCh
Confidence 3456788899998888776552 346789999999999999999999999998763 44668899999999999999
Q ss_pred HHHHHHHHHHhcCCC---CHH-HHHHH------------HHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 038109 87 SDLCRTLARLDKGFP---RKS-AYDTL------------IGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150 (324)
Q Consensus 87 ~~a~~~~~~~~~~~p---~~~-~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 150 (324)
++|...++++.+..| +.. .+..+ ...+...|++++|.+.++++.+... .+..++..+...+..
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 999999999988888 433 45444 5889999999999999999988643 467889999999999
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHH------------HHHHHH
Q 038109 151 GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD------------ALVLGA 218 (324)
Q Consensus 151 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------~li~~~ 218 (324)
.|++++|...+++..+.. +.+..++..+...+...|++++|...|++..+.... +...+. .+...+
T Consensus 167 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998874 347889999999999999999999999999876544 444443 236678
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCH
Q 038109 219 CRAGRVEEAFVLLRRMVDDGQSVLY----STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294 (324)
Q Consensus 219 ~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 294 (324)
.+.|++++|...+++..+.... +. ..+..+...+...|++++|...++...+.. +.+...+..+...|.+.|++
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 322 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMY 322 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCH
Confidence 9999999999999998875322 22 234557788999999999999999988764 33788999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 038109 295 NEANFILKEMNKRD 308 (324)
Q Consensus 295 ~~a~~~~~~m~~~~ 308 (324)
++|.+.|++..+.+
T Consensus 323 ~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 323 DEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998654
No 13
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=8.7e-22 Score=177.88 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038109 104 SAYDTLIGRLCKLKKIDEALRVVDIMAE---GGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180 (324)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 180 (324)
.+||++|++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||.+|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3899999999999999999999988764 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCh-hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC------HHHHHHHHHHH
Q 038109 181 TAYCFKGNL-TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL------YSTYAHVMGAL 253 (324)
Q Consensus 181 ~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~ 253 (324)
.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..+..|+ ..|...|.+.|
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHHH
Confidence 999999985 78999999999999999999999998766553 344444444 2344443 34444455555
Q ss_pred HhcC
Q 038109 254 LRLG 257 (324)
Q Consensus 254 ~~~g 257 (324)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5443
No 14
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2.2e-19 Score=151.58 Aligned_cols=267 Identities=12% Similarity=0.003 Sum_probs=216.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 038109 34 TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGR 112 (324)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~ 112 (324)
+...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++...|++++|...|+++.+..| +..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34458888889999999999999999998863 56678999999999999999999999999977666 57799999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCC---------CChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 038109 113 LCKLKKIDEALRVVDIMAEGGFG---------LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS-PDLTAYNYLLTA 182 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~m~~~g~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~ 182 (324)
|...|++++|++.|+++.+.... .....+..+...+.+.|++++|...++++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999999874311 01223344578889999999999999999886432 268899999999
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 038109 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262 (324)
Q Consensus 183 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 262 (324)
|...|++++|...|++..+.... +..+|..+..+|.+.|++++|.+.|++..+.. +.+..++..+...|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999887554 78899999999999999999999999988753 23477888899999999999999
Q ss_pred HHHHHHhCCCCCC-----------cCHhHHHHHHHHHhCcCCHHHHHHHHHH
Q 038109 263 VKFVMVCGGRDIK-----------LDTELFGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 263 ~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
...++.+.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999888653211 1367889999999999999988877654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.2e-17 Score=138.51 Aligned_cols=278 Identities=12% Similarity=-0.030 Sum_probs=231.4
Q ss_pred CCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhh-hHH
Q 038109 9 TKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS-VLS 87 (324)
Q Consensus 9 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~ 87 (324)
..|++++|...++........ +...+..++..+...|++++|..+++++.+.. +.+...+..+...+...| +++
T Consensus 34 ~~g~~~~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 108 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVMEKDPF----HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNE 108 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT----CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHH
T ss_pred HcCCHHHHHHHHHHHHHcCCC----ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHH
Confidence 457889999988887766532 22346777788899999999999999998863 556788999999999999 999
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 88 DLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 88 ~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
+|...+++..+..| +..+|..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|...+++..+
T Consensus 109 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999988777 4668999999999999999999999999886432 566777889999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038109 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK--------LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238 (324)
Q Consensus 167 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 238 (324)
.. +.+..++..+...+...|++++|...+++..+.. ...+..++..+...+...|++++|.+.+++..+..
T Consensus 188 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 188 IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 75 3467889999999999999999999999887642 13346789999999999999999999999988754
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHH-hCcCCHH
Q 038109 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL-IGLERFN 295 (324)
Q Consensus 239 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 295 (324)
. .+...+..+...+...|++++|...++...+... .+...+..+..++ ...|+.+
T Consensus 267 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 267 P-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp T-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred c-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence 2 3567888899999999999999999999988753 3677888888877 4566654
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.5e-18 Score=152.91 Aligned_cols=289 Identities=10% Similarity=-0.070 Sum_probs=239.7
Q ss_pred CCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHH
Q 038109 8 PTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87 (324)
Q Consensus 8 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (324)
...|.+++|...++...... |+...|..+..++.+.|++++|.+.++.+.+.+ +.+...+..+..++...|+++
T Consensus 17 ~~~g~~~~A~~~~~~al~~~-----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHhccHHHHHHHHHHHHhcC-----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 34678888988888887766 788999999999999999999999999998864 455678999999999999999
Q ss_pred HHHHHHHHHhcCCCC-----------------------------------------------------------------
Q 038109 88 DLCRTLARLDKGFPR----------------------------------------------------------------- 102 (324)
Q Consensus 88 ~a~~~~~~~~~~~p~----------------------------------------------------------------- 102 (324)
+|...|+++....|.
T Consensus 91 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 999999988544331
Q ss_pred ---------------HHHHHHHHHHHHc---cCCHHHHHHHHHHHHh-----CCCC--------CChhhHHHHHHHHHcc
Q 038109 103 ---------------KSAYDTLIGRLCK---LKKIDEALRVVDIMAE-----GGFG--------LSAITFHPILSVLTRG 151 (324)
Q Consensus 103 ---------------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~~--------~~~~~~~~li~~~~~~ 151 (324)
...+......+.. .|++++|...|+++.+ ..-. .+..++..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 2233333333443 8999999999999987 3111 2356788888899999
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 231 (324)
|++++|...+++..+... +..++..+..++...|++++|...++++.+.... +...+..+...+...|++++|...+
T Consensus 251 ~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999988653 3888999999999999999999999999887554 6788999999999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 232 RRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 232 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
++..+... .+..++..+...+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 328 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 328 DKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99987643 356778888999999999999999999987754 336778889999999999999999999988653
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=2.2e-18 Score=142.88 Aligned_cols=263 Identities=11% Similarity=0.005 Sum_probs=219.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q 038109 36 AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLC 114 (324)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~ 114 (324)
..+-.+...+...|++++|.++++++.+.. +.+...+..+..++...|++++|...++++.+..| +..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 346777788999999999999999998763 45678888999999999999999999999977666 5678999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038109 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPI--------------LS-VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 179 (324)
..|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.+... .+..++..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence 999999999999999986432 33334333 22 37788999999999999988653 378889999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038109 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259 (324)
Q Consensus 180 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 259 (324)
...|...|++++|...++++.+.... +..++..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999887544 68899999999999999999999999988753 24577888899999999999
Q ss_pred HHHHHHHHHhCCCCCCc-----------CHhHHHHHHHHHhCcCCHHHHHHHHHH
Q 038109 260 AQAVKFVMVCGGRDIKL-----------DTELFGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 260 ~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
++|...++......... +...|..+..++.+.|+.++|..++++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999998886653221 477889999999999999999999874
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=2.7e-17 Score=137.92 Aligned_cols=270 Identities=12% Similarity=-0.031 Sum_probs=222.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 038109 34 TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGR 112 (324)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~ 112 (324)
++..+..+...+...|++++|.+.|+.+.+.. +.+..++..+..++...|++++|...++++.+..| +...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34567888889999999999999999998863 55678899999999999999999999999977677 56789999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCC--CChhhHHHH------------HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038109 113 LCKLKKIDEALRVVDIMAEGGFG--LSAITFHPI------------LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 178 (324)
+...|++++|...|++..+.... .+...+..+ ...+...|++++|...++++.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999999875320 134444444 578889999999999999998864 347788999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-----------
Q 038109 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA----------- 247 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~----------- 247 (324)
+..++...|++++|...+++..+..+. +..++..+...+...|++++|.+.|++..+... .+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHH
Confidence 999999999999999999999987554 789999999999999999999999999886532 2222222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhCCCCCCcCH----hHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 248 -HVMGALLRLGYYAQAVKFVMVCGGRDIKLDT----ELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 248 -~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
.+...+.+.|++++|...++...+.... +. ..+..+...+.+.|++++|.+.+++..+.+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2356688999999999999988775432 33 335567889999999999999999998754
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.2e-17 Score=147.12 Aligned_cols=267 Identities=12% Similarity=-0.033 Sum_probs=222.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q 038109 36 AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLC 114 (324)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~ 114 (324)
..|...-..+.+.|++++|.+.|+++.+.+ |+..++..+..++...|++++|...++++.+..| +..+|..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 456777788999999999999999999864 7899999999999999999999999999977777 4669999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC---------------------------------------------------------
Q 038109 115 KLKKIDEALRVVDIMAEGGFGLS--------------------------------------------------------- 137 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~~g~~~~--------------------------------------------------------- 137 (324)
+.|++++|...|+++.+.+...+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999999999877542110
Q ss_pred ---------------------hhhHHHHHHHHH---ccCcHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHH
Q 038109 138 ---------------------AITFHPILSVLT---RGKRMEEAWGLMEVMKE-----IRV--------SPDLTAYNYLL 180 (324)
Q Consensus 138 ---------------------~~~~~~li~~~~---~~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~li 180 (324)
...+......+. +.|++++|...++++.+ ..- +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 222222223233 38999999999999887 311 22356788899
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 260 (324)
..+...|++++|...|+++.+.... ...+..+...+...|++++|.+.+++..... +.+..++..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999887544 8889999999999999999999999998653 245678888999999999999
Q ss_pred HHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 261 QAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
+|...++...+.... +...+..+...+.+.|++++|.++++++.+..
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 999999998776533 67788899999999999999999999987653
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.4e-17 Score=135.97 Aligned_cols=251 Identities=13% Similarity=0.057 Sum_probs=168.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCCc--hhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHH
Q 038109 43 NAAGHERDLETVRYLLNKRARDCCFNTA--NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKID 120 (324)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 120 (324)
+-....|++..|+...+..... .|+. .....+.++|...|+++.|...++.. ..|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHH
Confidence 3445677787777777665432 2332 23445667778888887777655431 2245557777777888888888
Q ss_pred HHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 038109 121 EALRVVDIMAEGGFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199 (324)
Q Consensus 121 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 199 (324)
+|++.++++...+..| +...+..+...+...|++++|.+.+++ +.+...+..+...+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888877766444 344555556777788888888887776 356677777778888888888888888887
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc
Q 038109 200 EEEKLGADARTY---DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276 (324)
Q Consensus 200 ~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (324)
.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++.....+ -
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 7664 332211 22233344557788888888887765 335667777777788888888888888877766543 3
Q ss_pred CHhHHHHHHHHHhCcCCHHH-HHHHHHHHHhC
Q 038109 277 DTELFGSLGSKLIGLERFNE-ANFILKEMNKR 307 (324)
Q Consensus 277 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 307 (324)
++.++..++..+...|+.++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 66777777777777777765 46777776643
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.6e-17 Score=140.11 Aligned_cols=258 Identities=10% Similarity=-0.091 Sum_probs=204.3
Q ss_pred hcCCCHHHHHH-HHHHHHhcCC-CC--CchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHH
Q 038109 46 GHERDLETVRY-LLNKRARDCC-FN--TANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKID 120 (324)
Q Consensus 46 ~~~~~~~~a~~-~~~~m~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~ 120 (324)
.-.|++++|.+ .+++.....- .| +...+..+...+...|++++|...++++.+..| +..+|..+...+...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34578888888 7776554311 11 356678889999999999999999999987776 5668999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHh
Q 038109 121 EALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY---------------LLTAYCF 185 (324)
Q Consensus 121 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~ 185 (324)
+|.+.|+++.+... .+..++..+...+...|++++|...++++.+.... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999988643 37888999999999999999999999999886532 2222221 2344448
Q ss_pred cCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 186 KGNLTATSGVLKKMEEEKLGA-DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 264 (324)
.|++++|...|+++.+..... +..++..+...|.+.|++++|...|++..... +.+..++..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998864432 58899999999999999999999999988753 2456788999999999999999999
Q ss_pred HHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 265 FVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
.++.+.+.. +.+...+..+...|.+.|++++|...|++..+.
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999987764 346788999999999999999999999988653
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.78 E-value=2.1e-17 Score=146.48 Aligned_cols=288 Identities=12% Similarity=-0.000 Sum_probs=219.5
Q ss_pred CCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHH
Q 038109 8 PTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87 (324)
Q Consensus 8 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (324)
...|++++|...++....... .++..|..+..++.+.|++++|.+.++++.+.+ +.+...+..+..++...|+++
T Consensus 36 ~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIELDP----NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhccHHHHHHHHHHHHhhCC----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHH
Confidence 345777888888877776652 356778888888888999999999998888753 455677888888888899999
Q ss_pred HHHHHHHHHhcCCCCHH---------------------------------------------------------------
Q 038109 88 DLCRTLARLDKGFPRKS--------------------------------------------------------------- 104 (324)
Q Consensus 88 ~a~~~~~~~~~~~p~~~--------------------------------------------------------------- 104 (324)
+|...|+.+. ..|+..
T Consensus 111 ~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 111 DAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 9998886442 222211
Q ss_pred ------HHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCC-------hhhHHHHHHHHHccCcHHHHHHHHHH
Q 038109 105 ------AYDTLIGRLCK--------LKKIDEALRVVDIMAEGGFGLS-------AITFHPILSVLTRGKRMEEAWGLMEV 163 (324)
Q Consensus 105 ------~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~ 163 (324)
....+...+.. .|++++|..+++++.+.... + ..++..+...+...|++++|...++.
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 01111111111 13678888888888765322 2 23466666778889999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 038109 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY 243 (324)
Q Consensus 164 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 243 (324)
..+.. |+..++..+...+...|++++|...|++..+.... +..+|..+...+...|++++|.+.|++..+... .+.
T Consensus 269 ~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~ 344 (537)
T 3fp2_A 269 SINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENV 344 (537)
T ss_dssp HHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCS
T ss_pred HHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCH
Confidence 98864 56888889999999999999999999999887554 788899999999999999999999999887542 345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 244 STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.+++..+.
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 778888999999999999999999888764 336778889999999999999999999987653
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=2e-17 Score=139.61 Aligned_cols=236 Identities=10% Similarity=-0.089 Sum_probs=194.3
Q ss_pred CchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038109 69 TANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147 (324)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 147 (324)
+...+..+...+.+.|++++|...|+++.+..| +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 445688889999999999999999999977666 57799999999999999999999999998864 2367889999999
Q ss_pred HHccCcHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 038109 148 LTRGKRMEEAWGLMEVMKEIRVS---------PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG-ADARTYDALVLG 217 (324)
Q Consensus 148 ~~~~~~~~~a~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~ 217 (324)
+...|++++|...++++.+.... .....+..+...+...|++++|...|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999998875311 01233445688899999999999999999887543 268899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHH
Q 038109 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297 (324)
Q Consensus 218 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 297 (324)
|...|++++|.+.|++..+.. +.+..++..+..+|...|++++|...++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998753 3457889999999999999999999999988764 33588899999999999999999
Q ss_pred HHHHHHHHhC
Q 038109 298 NFILKEMNKR 307 (324)
Q Consensus 298 ~~~~~~m~~~ 307 (324)
...|++..+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998653
No 24
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.78 E-value=3.1e-16 Score=138.95 Aligned_cols=228 Identities=11% Similarity=-0.015 Sum_probs=118.9
Q ss_pred hchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHH
Q 038109 78 NTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA 157 (324)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 157 (324)
..+...|++++|...++.+.+..|+..+|..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHH
Confidence 333444444555555554444444444445555555555555555555555544321 1344455555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038109 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 158 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 237 (324)
...+++..+... .+...+..+..++...|++++|...++++.+.... +...+..+...+...|++++|.+.|++..+.
T Consensus 330 ~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 555555554321 13344555555555555555555555555544322 3445555555555556666665555554432
Q ss_pred C-----CCcCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHH
Q 038109 238 G-----QSVLYSTYAHVMGALLRL----------GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILK 302 (324)
Q Consensus 238 ~-----~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (324)
. .......+......+... |++++|...++...+.. +.+...+..+...|.+.|++++|.+.|+
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1 001111122233444455 66666666666655543 2356677777777888888888888888
Q ss_pred HHHhCCC
Q 038109 303 EMNKRDL 309 (324)
Q Consensus 303 ~m~~~~~ 309 (324)
+..+..-
T Consensus 487 ~al~~~~ 493 (537)
T 3fp2_A 487 DSAILAR 493 (537)
T ss_dssp HHHHHC-
T ss_pred HHHHhCC
Confidence 7765543
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.4e-18 Score=142.88 Aligned_cols=250 Identities=12% Similarity=0.123 Sum_probs=109.4
Q ss_pred CccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHH
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 89 (324)
.|++++|.+.++.. +++.+|..+..++.+.|++++|.+.|.+ .+|..+|..++..+...|++++|
T Consensus 16 ~~~ld~A~~fae~~---------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 16 IGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHH
Confidence 34466666655544 2234799999999999999999999964 25777899999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCC
Q 038109 90 CRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169 (324)
Q Consensus 90 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 169 (324)
.+.++...+..++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 81 i~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 81 VKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 99888777666677788899999999999999888874 267779999999999999999999999966
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 038109 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249 (324)
Q Consensus 170 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 249 (324)
..|..+..++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|......+. ..|+ -...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHH
Confidence 37899999999999999999999988 278999999999999999999966554322 2343 34568
Q ss_pred HHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCc--CCHHHHHHHHH
Q 038109 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL--ERFNEANFILK 302 (324)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 302 (324)
+..|.+.|++++|..+++...... .-....|+-+...|++- ++..+.++.|.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888999999999999999888765 44667777777777653 45555555443
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.4e-16 Score=131.93 Aligned_cols=254 Identities=9% Similarity=-0.051 Sum_probs=209.1
Q ss_pred CCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHH
Q 038109 8 PTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87 (324)
Q Consensus 8 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (324)
...|++++|...++....... .+...|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|+++
T Consensus 32 ~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQAAP----EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHH
Confidence 345777888888877766542 366778899999999999999999999998863 456788899999999999999
Q ss_pred HHHHHHHHHhcCCCCHH-HHHHH--------------HH-HHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 038109 88 DLCRTLARLDKGFPRKS-AYDTL--------------IG-RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151 (324)
Q Consensus 88 ~a~~~~~~~~~~~p~~~-~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 151 (324)
+|.+.++++.+..|+.. .+..+ .. .+...|++++|.+.++++.+... .+..++..+...+...
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHh
Confidence 99999999977666433 33332 22 37888999999999999988643 3678899999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLL 231 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 231 (324)
|++++|...+++..+.. +.+..++..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|.+.+
T Consensus 186 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999988764 346788999999999999999999999999887544 7889999999999999999999999
Q ss_pred HHHHHCCCCc-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 232 RRMVDDGQSV-----------LYSTYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 232 ~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
++..+..... +..++..+..++...|++++|..+++..
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9987653221 4678888999999999999999987643
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=3.3e-18 Score=143.64 Aligned_cols=222 Identities=11% Similarity=0.088 Sum_probs=95.4
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038109 47 HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126 (324)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 126 (324)
+.|++++|.++++++ +++.+|..++.++.+.|++++|.+.|.+. +|..+|..++.++...|++++|++.+
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 667899999999887 23458999999999999999999999764 67779999999999999999999988
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 038109 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206 (324)
Q Consensus 127 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 206 (324)
+..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 777764 3467889999999999999999998885 377789999999999999999999999977
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHH
Q 038109 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286 (324)
Q Consensus 207 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (324)
..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHH
Confidence 36999999999999999999999988 2678999999999999999999665433 3334555667999
Q ss_pred HHhCcCCHHHHHHHHHHHHhC
Q 038109 287 KLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~~ 307 (324)
.|.+.|++++|..+++.....
T Consensus 216 ~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHCCCHHHHHHHHHHHhCC
Confidence 999999999999999987543
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=3.1e-16 Score=127.97 Aligned_cols=267 Identities=13% Similarity=0.027 Sum_probs=203.4
Q ss_pred CccchhHHHHHHHHhhhcCCCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHH
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPDEPTS--AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLS 87 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (324)
.|+..+|+...+.+.. ..|+. ...-.+..++...|+++.|...++. .-+|+..++..+...+...++.+
T Consensus 12 ~g~y~~ai~~~~~~~~-----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKP-----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp TTCHHHHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHhccc-----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 4555666655443322 33443 3456678899999999999986644 23567788888999999999999
Q ss_pred HHHHHHHHHhcC--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 038109 88 DLCRTLARLDKG--FP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164 (324)
Q Consensus 88 ~a~~~~~~~~~~--~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 164 (324)
+|.+.++++... .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|...++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999997543 47 455778888999999999999999987 457889999999999999999999999999
Q ss_pred HhCCCCCCHHHH---HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 038109 165 KEIRVSPDLTAY---NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241 (324)
Q Consensus 165 ~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 241 (324)
.+.. |+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|.+.|++..... +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 8864 443211 2233444556899999999999998744 489999999999999999999999999988653 23
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHH
Q 038109 242 LYSTYAHVMGALLRLGYYAQ-AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300 (324)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (324)
+..++..++..+...|+.++ +.++++.+.+.. |+... +.+...+.+.++++..-
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 57788889999999999875 678888887753 33332 23445555666665543
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.2e-16 Score=123.16 Aligned_cols=222 Identities=13% Similarity=0.065 Sum_probs=154.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC----C----HHHHH
Q 038109 36 AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP----R----KSAYD 107 (324)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~----~~~~~ 107 (324)
..|..+...+...|++++|.+.+++..+.. .+...+..+..++...|++++|...+++..+..| + ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 457777778888888888888888888765 6777888888888888888888888887754333 2 35777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038109 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187 (324)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 187 (324)
.+...+...|++++|...|++..+.. |+. ..+.+.|++++|...++...... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 78888888888888888888877632 332 33455567777777777776653 224556666777777777
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267 (324)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 267 (324)
++++|...|++..+.... +...|..+...|.+.|++++|.+.+++..+.. +.+..++..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777777777665443 56667777777777777777777777766543 2235556666666666677666666666
Q ss_pred HhCC
Q 038109 268 VCGG 271 (324)
Q Consensus 268 ~~~~ 271 (324)
...+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.2e-15 Score=119.05 Aligned_cols=194 Identities=16% Similarity=0.003 Sum_probs=101.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
.+..+...+.+.|++++|...|++..+... .+...+..+...+.+.|++++|...+++..+... .+...+..+..++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 444444444455555555555554444321 1344444444445555555555555554444321 13344444444555
Q ss_pred hc-----------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038109 185 FK-----------GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253 (324)
Q Consensus 185 ~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 253 (324)
.. |++++|...|++..+..+. +...+..+..++...|++++|...|++..+.. .+...+..+..++
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 54 6666777666666665443 55666666666667777777777776666555 4556666666666
Q ss_pred HhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHH
Q 038109 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEM 304 (324)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 304 (324)
...|++++|...++...+..+ .+...+..+...+.+.|++++|...+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777766665432 25566666667777777777777666654
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=9e-16 Score=119.79 Aligned_cols=198 Identities=14% Similarity=0.031 Sum_probs=99.9
Q ss_pred CCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038109 68 NTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146 (324)
Q Consensus 68 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 146 (324)
+++..+..+...+.+.|++++|...|++..+..| +...|..+...+.+.|++++|+..|++..+... -+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 3444444555555555555555555555544444 334555555555555555555555555554321 13444555555
Q ss_pred HHHcc-----------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 038109 147 VLTRG-----------KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215 (324)
Q Consensus 147 ~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 215 (324)
.+... |++++|...+++..+... -+...+..+..++...|++++|...|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 666666666666555432 244555566666666666666666666666555 3566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q 038109 216 LGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (324)
.+|...|++++|...|++..+.. +.+...+..+...+...|++++|...++...
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66666666666666666665432 1234455555566666666666666655443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.9e-15 Score=120.75 Aligned_cols=227 Identities=9% Similarity=-0.025 Sum_probs=192.0
Q ss_pred chhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CC----hhhHHH
Q 038109 70 ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG--LS----AITFHP 143 (324)
Q Consensus 70 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~----~~~~~~ 143 (324)
...+..+...+...|++++|...+++..+..++..+|..+...+...|++++|++.+++..+.... ++ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 356778888999999999999999988543377789999999999999999999999998874321 12 578889
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038109 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223 (324)
Q Consensus 144 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 223 (324)
+...+...|++++|...+++..+.. |+. ..+...|++++|...++.+...... +...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998853 443 4566778899999999999887544 67788899999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHH
Q 038109 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 224 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
+++|...+++..+.. +.+..++..+...+...|++++|...++...+.. +.+...|..+...+.+.|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999998754 2457888889999999999999999999988764 33688899999999999999999999999
Q ss_pred HHhCC
Q 038109 304 MNKRD 308 (324)
Q Consensus 304 m~~~~ 308 (324)
..+.+
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 87544
No 33
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=1.1e-13 Score=111.84 Aligned_cols=224 Identities=8% Similarity=-0.051 Sum_probs=158.2
Q ss_pred chhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038109 70 ANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCK----LKKIDEALRVVDIMAEGGFGLSAITFHPIL 145 (324)
Q Consensus 70 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 145 (324)
+.++..+...+...|++++|...|++..+ ..+..++..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 34455556666666667777666666654 1234566667777777 777777777777777764 556667777
Q ss_pred HHHHc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038109 146 SVLTR----GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF----KGNLTATSGVLKKMEEEKLGADARTYDALVLG 217 (324)
Q Consensus 146 ~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 217 (324)
..+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 77777 778888888887777764 56677777777777 788888888888777764 55666677777
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHh
Q 038109 218 ACR----AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR----LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289 (324)
Q Consensus 218 ~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 289 (324)
|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+++...+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 776 778888888888777654 33556667777777 788888888887776654 2556667777777
Q ss_pred C----cCCHHHHHHHHHHHHhCCC
Q 038109 290 G----LERFNEANFILKEMNKRDL 309 (324)
Q Consensus 290 ~----~g~~~~a~~~~~~m~~~~~ 309 (324)
+ .+++++|.+.|++..+.|.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCcccCHHHHHHHHHHHHHcCC
Confidence 7 7888888888887776653
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=8.6e-16 Score=124.05 Aligned_cols=247 Identities=15% Similarity=-0.008 Sum_probs=162.0
Q ss_pred hcCCCHHHHHHHHHHHHhcCC---CCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHH
Q 038109 46 GHERDLETVRYLLNKRARDCC---FNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDE 121 (324)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~ 121 (324)
...|++++|.+.++++.+... +.+..++..+...+...|++++|...|+++.+..| +..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345677888888887776521 12345677777777888888888888877766555 46677778888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 038109 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201 (324)
Q Consensus 122 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 201 (324)
|.+.|++..+... .+..++..+...+.+.|++++|...++++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888888777432 256677777778888888888888888877643 4444444444555666788888888876665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCH
Q 038109 202 EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS--V-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDT 278 (324)
Q Consensus 202 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (324)
... ++...+. ++..+...++.++|.+.++........ | +..++..+...+...|++++|...++...... |+.
T Consensus 173 ~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 432 2333333 566667777777888877776543211 1 14666777777888888888888888777653 321
Q ss_pred hHHHHHHHHHhCcCCHHHHHHHH
Q 038109 279 ELFGSLGSKLIGLERFNEANFIL 301 (324)
Q Consensus 279 ~~~~~l~~~~~~~g~~~~a~~~~ 301 (324)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 223345566677777776655
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=2.7e-14 Score=111.47 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=8.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH
Q 038109 39 DDLVNAAGHERDLETVRYLLNKR 61 (324)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m 61 (324)
..+...+...|++++|.+.++.+
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~ 34 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDA 34 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333334444444443333
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.1e-14 Score=117.39 Aligned_cols=232 Identities=10% Similarity=-0.050 Sum_probs=149.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC----HHHHHHHHHHH
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPR----KSAYDTLIGRL 113 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~li~~~ 113 (324)
+......+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+++..+..++ ..+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4455566777888888888888777652 334456777777777777777777777777552221 22467777777
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 038109 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193 (324)
Q Consensus 114 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 193 (324)
...|++++|++.|++..+... .+..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776432 245667777777777777777777777766652 234555555552333445777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHC-CCCcC------HHHHHHHHHHHHhcCCHHHHH
Q 038109 194 GVLKKMEEEKLGADARTYDALVLGACRAGR---VEEAFVLLRRMVDD-GQSVL------YSTYAHVMGALLRLGYYAQAV 263 (324)
Q Consensus 194 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~-~~~p~------~~~~~~li~~~~~~g~~~~a~ 263 (324)
..|++..+.... +...+..+..++...|+ .++|...+++..+. .-.|+ ..+|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777765433 45666666666666666 66677766665543 11122 145555666667777777777
Q ss_pred HHHHHhCCCC
Q 038109 264 KFVMVCGGRD 273 (324)
Q Consensus 264 ~~~~~~~~~~ 273 (324)
..++...+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 7776666543
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=3.5e-14 Score=113.16 Aligned_cols=196 Identities=9% Similarity=-0.096 Sum_probs=96.0
Q ss_pred hHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 038109 73 FNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151 (324)
Q Consensus 73 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 151 (324)
+..+...+...|++++|...++++.+..| +..+|..+...+...|++++|.+.++++.+... .+..++..+...+...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333 333445555555555555555555555544321 1344445555555555
Q ss_pred CcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSP-DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL 230 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 230 (324)
|++++|...++++.+.+..| +...+..+..++...|++++|...|++..+.... +...+..+...+...|++++|...
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555554422222 3344455555555555555555555555544322 445555555555555555555555
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 231 LRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 231 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
+++..+.. +.+...+..+...+...|+.++|.++++.+.+
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 198 YDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55554322 12344444555555555555555555555544
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=4.6e-14 Score=110.17 Aligned_cols=203 Identities=12% Similarity=-0.033 Sum_probs=173.9
Q ss_pred CCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038109 68 NTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILS 146 (324)
Q Consensus 68 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 146 (324)
.++..+..+...+...|++++|.+.++++.+..| +..+|..+...+...|++++|.+.++++.+... .+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 3456788889999999999999999999877666 567899999999999999999999999988633 36788899999
Q ss_pred HHHcc-CcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 038109 147 VLTRG-KRMEEAWGLMEVMKEIRVSP-DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224 (324)
Q Consensus 147 ~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 224 (324)
.+... |++++|...++++.+.+..| +...+..+..++...|++++|...|+++.+.... +...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998843333 3678889999999999999999999999887544 688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 225 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
++|.+.+++..+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999887542245667777888889999999999999988754
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=4.9e-14 Score=112.32 Aligned_cols=202 Identities=11% Similarity=-0.050 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038109 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182 (324)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 182 (324)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...+++..+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 3478889999999999999999999998763 33678889999999999999999999999887643 367889999999
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038109 183 YCFKGNLTATSGVLKKMEEEKLGA-DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261 (324)
Q Consensus 183 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 261 (324)
|...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998833344 56788889999999999999999999988754 2357788889999999999999
Q ss_pred HHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 262 AVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
|..+++.+.+.. +.+...+..+...+.+.|+.++|.++++++.+.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999998764 3477788889999999999999999999998754
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=5e-14 Score=113.62 Aligned_cols=229 Identities=10% Similarity=-0.042 Sum_probs=185.7
Q ss_pred hhhhchhhhhhHHHHHHHHHHHhcCC----C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038109 75 FITNTENSLSVLSDLCRTLARLDKGF----P-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149 (324)
Q Consensus 75 ~l~~~~~~~~~~~~a~~~~~~~~~~~----p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 149 (324)
.+.......|++++|...++++.+.. | +..+|..+...+...|++++|...|+++.+... .+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 10 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLT 88 (275)
T ss_dssp GSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_pred ceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHH
Confidence 34445677899999999999997653 2 345889999999999999999999999998643 36888999999999
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229 (324)
Q Consensus 150 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 229 (324)
..|++++|...+++..+.. +.+..++..+..+|...|++++|...|+++.+.. |+.......+..+...|++++|..
T Consensus 89 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999998864 2367889999999999999999999999998864 444444445556677899999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc---CHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL---DTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 230 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.+++..... +++...+ .+...+...++.++|...+.......... +...+..+...|.+.|++++|...|++..+
T Consensus 166 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 166 VLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 998877653 2333343 47777888899999999999988764321 257888899999999999999999999987
Q ss_pred CCC
Q 038109 307 RDL 309 (324)
Q Consensus 307 ~~~ 309 (324)
.+.
T Consensus 244 ~~p 246 (275)
T 1xnf_A 244 NNV 246 (275)
T ss_dssp TCC
T ss_pred CCc
Confidence 653
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=4.1e-14 Score=119.44 Aligned_cols=247 Identities=11% Similarity=0.041 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhh-HHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q 038109 36 AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV-LSDLCRTLARLDKGFP-RKSAYDTLIGRL 113 (324)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~p-~~~~~~~li~~~ 113 (324)
..|..+-..+...|++++|++.+++.++.. +-+...|..+..++...|+ +++|...++++.+..| +..+|..+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 457777777888889999999999888753 4455778888888888886 9999999988877777 566888888888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhhH
Q 038109 114 CKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF-KGNLTAT 192 (324)
Q Consensus 114 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a 192 (324)
...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..++++.+... -+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 8889999999999888875433 677888888888888889999999988888653 367788888888888 5555777
Q ss_pred -----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--------
Q 038109 193 -----SGVLKKMEEEKLGADARTYDALVLGACRAG--RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG-------- 257 (324)
Q Consensus 193 -----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-------- 257 (324)
...|++.....+. +...|+.+...+...| ++++|++.++++ + ....+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 4778777776554 6778888888888877 578888888877 2 23345667777777887764
Q ss_pred -CHHHHHHHHHHh-CCCCCCcCHhHHHHHHHHHh
Q 038109 258 -YYAQAVKFVMVC-GGRDIKLDTELFGSLGSKLI 289 (324)
Q Consensus 258 -~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 289 (324)
.+++|..+++.+ .+... .....|..+...+.
T Consensus 332 ~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDT-IRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence 257888888888 55432 23445555554443
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=2.6e-14 Score=115.24 Aligned_cols=236 Identities=11% Similarity=-0.029 Sum_probs=187.7
Q ss_pred chhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHH
Q 038109 70 ANTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--AITFHPILS 146 (324)
Q Consensus 70 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~ 146 (324)
+..+......+...|++++|...+++..+..|+ ..++..+...|...|++++|++.+++..+.+..|+ ..+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344556677889999999999999999887774 44888999999999999999999999998432222 234888999
Q ss_pred HHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038109 147 VLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226 (324)
Q Consensus 147 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 226 (324)
.+...|++++|...+++..+... .+..++..+...|...|++++|...|++..+.... +...|..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988643 36688999999999999999999999998887443 67778877734445569999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHhCCCC-CCcC------HhHHHHHHHHHhCcCCHHH
Q 038109 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY---YAQAVKFVMVCGGRD-IKLD------TELFGSLGSKLIGLERFNE 296 (324)
Q Consensus 227 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~ 296 (324)
|.+.|++..+... .+...+..+...+...|+ +++|...++...+.. -.|+ ...|..+...|.+.|++++
T Consensus 161 A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999987532 335677777888888888 777888776665431 1123 2578888999999999999
Q ss_pred HHHHHHHHHhCC
Q 038109 297 ANFILKEMNKRD 308 (324)
Q Consensus 297 a~~~~~~m~~~~ 308 (324)
|.+.+++..+.+
T Consensus 240 A~~~~~~al~~~ 251 (272)
T 3u4t_A 240 ADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999998655
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=3.3e-13 Score=109.01 Aligned_cols=224 Identities=10% Similarity=-0.046 Sum_probs=194.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhh----hhhHHHHHHHHHHHhcCCCCHHHHHHH
Q 038109 34 TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENS----LSVLSDLCRTLARLDKGFPRKSAYDTL 109 (324)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~l 109 (324)
++..+..+-..+...|++++|.+.|++..+. .+...+..+...+.. .+++++|...|++..+.. +..++..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 4556777888889999999999999999883 345678888888998 999999999999986653 67788999
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038109 110 IGRLCK----LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR----GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181 (324)
Q Consensus 110 i~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 181 (324)
...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 999999 999999999999999875 67788888899988 999999999999999876 5677888888
Q ss_pred HHHh----cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038109 182 AYCF----KGNLTATSGVLKKMEEEKLGADARTYDALVLGACR----AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253 (324)
Q Consensus 182 ~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 253 (324)
.|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+. ...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Confidence 8888 999999999999998874 56788889999999 9999999999999988753 45667788888
Q ss_pred Hh----cCCHHHHHHHHHHhCCCC
Q 038109 254 LR----LGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 254 ~~----~g~~~~a~~~~~~~~~~~ 273 (324)
.. .+++++|..+++...+.|
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 88 899999999999988775
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=1.4e-14 Score=114.68 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=55.2
Q ss_pred hhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHH
Q 038109 77 TNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME 155 (324)
Q Consensus 77 ~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 155 (324)
...+...|++++|...++++.+..| +..++..+...+...|++++|++.++++.+... .+..++..+...+...|+++
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp ------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHhccHH
Confidence 3333333444444444433333322 233333444444444444444444444433211 12333333334444444444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 156 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
+|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..
T Consensus 109 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 109 EAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444433322 112333333444444444444444444443333221 33333444444444444444444444333
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=1.8e-14 Score=114.10 Aligned_cols=203 Identities=14% Similarity=0.057 Sum_probs=159.3
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHH
Q 038109 32 EPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLI 110 (324)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li 110 (324)
..+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..| +..++..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 3455668888888999999999999999998853 55678888999999999999999999999877666 567899999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 038109 111 GRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190 (324)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 190 (324)
..+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999988643 367788899999999999999999999988764 346788999999999999999
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038109 191 ATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238 (324)
Q Consensus 191 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 238 (324)
+|...|++..+.... +..++..+...|...|++++|.+.+++..+..
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999887544 68899999999999999999999999988653
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.7e-13 Score=115.64 Aligned_cols=232 Identities=9% Similarity=0.030 Sum_probs=194.9
Q ss_pred hhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038109 71 NTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKK-IDEALRVVDIMAEGGFGLSAITFHPILSVL 148 (324)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 148 (324)
..|..+..++...|++++|...++++.+..| +..+|+.+...+...|+ +++|+..|++..+.... +...|..+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4677778888899999999999999988777 46799999999999997 99999999999986443 678899999999
Q ss_pred HccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHH
Q 038109 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR-AGRVEEA 227 (324)
Q Consensus 149 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a 227 (324)
...|++++|...|++..+... -+...|..+..++.+.|++++|+..|+++.+..+. +...|+.+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999998753 37889999999999999999999999999998776 88999999999999 6665777
Q ss_pred -----HHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcC--------
Q 038109 228 -----FVLLRRMVDDGQSVLYSTYAHVMGALLRLG--YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE-------- 292 (324)
Q Consensus 228 -----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 292 (324)
++.|++...... -+...|..+...+...| ++++|...+..+ +.. +.+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchH
Confidence 478888776431 24567777788888888 689999999888 443 346788888999998874
Q ss_pred -CHHHHHHHHHHH-HhCC
Q 038109 293 -RFNEANFILKEM-NKRD 308 (324)
Q Consensus 293 -~~~~a~~~~~~m-~~~~ 308 (324)
..++|.++++++ .+.+
T Consensus 332 ~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 358999999998 5443
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=3.5e-14 Score=121.07 Aligned_cols=275 Identities=12% Similarity=0.001 Sum_probs=209.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC----chhhHhhhhchhhhhhHHHHHHHHHHHhcC---C---
Q 038109 31 DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNT----ANTFNFITNTENSLSVLSDLCRTLARLDKG---F--- 100 (324)
Q Consensus 31 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--- 100 (324)
..+....+...-..+...|++++|...+++..+.+ +.+ ...+..+...+...|++++|...+++.... .
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 34566667778888999999999999999998763 223 256788889999999999999999886322 1
Q ss_pred C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHccCc--------------------H
Q 038109 101 P-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFG-LS----AITFHPILSVLTRGKR--------------------M 154 (324)
Q Consensus 101 p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~~~--------------------~ 154 (324)
| ...++..+...|...|++++|...+++..+.... ++ ..++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 2 2337888999999999999999999988753110 11 4478888888999999 9
Q ss_pred HHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCH
Q 038109 155 EEAWGLMEVMKEI----RVS-PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG-AD----ARTYDALVLGACRAGRV 224 (324)
Q Consensus 155 ~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~ 224 (324)
++|...+++..+. +.. ....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999998876542 211 12457888899999999999999999987643111 12 34788889999999999
Q ss_pred HHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCC-----CcCHhHHHHHHHHHhCcCCH
Q 038109 225 EEAFVLLRRMVDD----GQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI-----KLDTELFGSLGSKLIGLERF 294 (324)
Q Consensus 225 ~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~ 294 (324)
++|...+++.... +..+. ..++..+...+...|++++|...++...+... .....++..+...|.+.|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 9999999987643 21111 56778888899999999999999987754311 11256788889999999999
Q ss_pred HHHHHHHHHHHh
Q 038109 295 NEANFILKEMNK 306 (324)
Q Consensus 295 ~~a~~~~~~m~~ 306 (324)
++|.+.+++..+
T Consensus 324 ~~A~~~~~~al~ 335 (406)
T 3sf4_A 324 DQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=1.9e-14 Score=123.21 Aligned_cols=271 Identities=11% Similarity=-0.020 Sum_probs=207.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCc----hhhHhhhhchhhhhhHHHHHHHHHHHhcC------CC-CHHH
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRARDCCFNTA----NTFNFITNTENSLSVLSDLCRTLARLDKG------FP-RKSA 105 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p-~~~~ 105 (324)
.+..+-..+...|++++|.+.|++..+.+ +.+. ..+..+...+...|++++|...+++..+. .| ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34556667889999999999999998863 2232 46888899999999999999999887432 12 2347
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCCChhhHHHHHHHHHccCc-----------------HHHHHHHHHH
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAEG----G-FGLSAITFHPILSVLTRGKR-----------------MEEAWGLMEV 163 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~ 163 (324)
+..+...|...|++++|...+++..+. + .+....++..+...+...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 889999999999999999999987753 1 11234578888889999999 9999999887
Q ss_pred HHhC----CC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038109 164 MKEI----RV-SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG-AD----ARTYDALVLGACRAGRVEEAFVLLRR 233 (324)
Q Consensus 164 m~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 233 (324)
..+. +. .....++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 11 122457888899999999999999999987653111 12 33788899999999999999999998
Q ss_pred HHHC----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCC-----CcCHhHHHHHHHHHhCcCCHHHHHHHHHH
Q 038109 234 MVDD----GQS-VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI-----KLDTELFGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 234 m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
.... +.. ....++..+...+...|++++|...++....... .....++..+...|.+.|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7653 111 1256778888899999999999999987755311 11245788889999999999999999998
Q ss_pred HHhCC
Q 038109 304 MNKRD 308 (324)
Q Consensus 304 m~~~~ 308 (324)
..+..
T Consensus 369 al~~~ 373 (411)
T 4a1s_A 369 HLQLA 373 (411)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 76543
No 49
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.58 E-value=3.1e-11 Score=105.81 Aligned_cols=50 Identities=12% Similarity=-0.019 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhC----cCCHHHHHHHHHHHHhCC
Q 038109 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG----LERFNEANFILKEMNKRD 308 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 308 (324)
.+++++|..+++...+.+ ++..+..+...|.+ .++.++|...|++..+.+
T Consensus 380 ~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 344444444444444332 23333444444443 444444444444444443
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=5.5e-12 Score=103.74 Aligned_cols=216 Identities=7% Similarity=-0.044 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHhhhhchhh-------hhhH-------HHHHHHHHHHhc-CCC-CHHHHHHHHHHHHc
Q 038109 52 ETVRYLLNKRARDCCFNTANTFNFITNTENS-------LSVL-------SDLCRTLARLDK-GFP-RKSAYDTLIGRLCK 115 (324)
Q Consensus 52 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~-~~p-~~~~~~~li~~~~~ 115 (324)
++|..+|++.... .+.++..|..++..+.. .|++ ++|...|++..+ ..| +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6788888888775 35566777777776653 3554 889999998887 467 45588888889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-hh-hHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChhhH
Q 038109 116 LKKIDEALRVVDIMAEGGFGLS-AI-TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC-FKGNLTAT 192 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~a 192 (324)
.|++++|.++|++..+. .|+ .. +|..+...+.+.|++++|..+|++..+... ++...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998874 343 33 788888888888999999999998887643 34445544433322 36889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG-QSV--LYSTYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 193 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
..+|++..+..+. +...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..+++.+
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888776443 67888888888888999999999999888753 344 3567777788888889999998888887
Q ss_pred CCC
Q 038109 270 GGR 272 (324)
Q Consensus 270 ~~~ 272 (324)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 51
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.56 E-value=5.3e-11 Score=104.35 Aligned_cols=256 Identities=10% Similarity=-0.059 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhh----hhhHHHHHHHHHHHhcCCCCHHH
Q 038109 34 TSAYYDDLVNAAGH----ERDLETVRYLLNKRARDCCFNTANTFNFITNTENS----LSVLSDLCRTLARLDKGFPRKSA 105 (324)
Q Consensus 34 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~ 105 (324)
++..+..+-..+.. .+++++|.+.|++..+.| ++..+..|...|.. .++.++|.+.|++..+. .+...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHH
Confidence 34445555555555 677777777777766653 34555566666666 67777777777766443 24455
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 038109 106 YDTLIGRLCK----LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR----GKRMEEAWGLMEVMKEIRVSPDLTAYN 177 (324)
Q Consensus 106 ~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 177 (324)
+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|...|++..+.| +...+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566666666 667777777777776654 34555555555554 566777777777766654 455666
Q ss_pred HHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 038109 178 YLLTAYCF----KGNLTATSGVLKKMEEEKLGADARTYDALVLGACR----AGRVEEAFVLLRRMVDDGQSVLYSTYAHV 249 (324)
Q Consensus 178 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 249 (324)
.+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.|. ...+..+
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~l 261 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SIAQFRL 261 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 66666666 667777777777666553 44555556666654 5666677776666655432 2333444
Q ss_pred HHHHHh----cCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCc-----CCHHHHHHHHHHHHhCC
Q 038109 250 MGALLR----LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL-----ERFNEANFILKEMNKRD 308 (324)
Q Consensus 250 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~ 308 (324)
-..+.. .++.++|..+++...+.| ++..+..+...|... ++.++|...+++..+.|
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 444555 566666666666665544 334444555555554 66666666666655544
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=3.9e-14 Score=117.34 Aligned_cols=270 Identities=13% Similarity=-0.010 Sum_probs=204.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC----chhhHhhhhchhhhhhHHHHHHHHHHHhcCC------C-CHHH
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRARDCCFNT----ANTFNFITNTENSLSVLSDLCRTLARLDKGF------P-RKSA 105 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p-~~~~ 105 (324)
.+...-..+...|++++|...++++.+.. +.+ ...+..+...+...|++++|...+++..... | ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667788999999999999998863 223 3567788899999999999999998864321 2 2347
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHccCc--------------------HHHHHHH
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFG-LS----AITFHPILSVLTRGKR--------------------MEEAWGL 160 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 160 (324)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 888999999999999999999987652111 12 3477888888999999 9999998
Q ss_pred HHHHHhC----CC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHH
Q 038109 161 MEVMKEI----RV-SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG-AD----ARTYDALVLGACRAGRVEEAFVL 230 (324)
Q Consensus 161 ~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~ 230 (324)
+++.... +. .....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876542 11 112457888889999999999999999987643110 12 34788889999999999999999
Q ss_pred HHHHHHC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC-----CCcCHhHHHHHHHHHhCcCCHHHHHHH
Q 038109 231 LRRMVDD----GQSV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD-----IKLDTELFGSLGSKLIGLERFNEANFI 300 (324)
Q Consensus 231 ~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (324)
+++.... +..+ ...++..+...+...|++++|...++...... ......++..+...|.+.|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9987643 2111 15567778889999999999999998775431 111245777889999999999999999
Q ss_pred HHHHHhC
Q 038109 301 LKEMNKR 307 (324)
Q Consensus 301 ~~~m~~~ 307 (324)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9988754
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=2.1e-13 Score=118.99 Aligned_cols=217 Identities=9% Similarity=-0.115 Sum_probs=181.9
Q ss_pred hhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHH
Q 038109 83 LSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKI-DEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGL 160 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 160 (324)
...++++...++......| +...|..+...+...|++ ++|++.|++..+... -+...|..+...|.+.|++++|...
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456777777777766666 677899999999999999 999999999987543 2578899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc---------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CC
Q 038109 161 MEVMKEIRVSPDLTAYNYLLTAYCFK---------GNLTATSGVLKKMEEEKLGADARTYDALVLGACRA--------GR 223 (324)
Q Consensus 161 ~~~m~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~ 223 (324)
|++..+.. |+...+..+..++... |++++|...|++..+.... +...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 99998864 6678889999999999 9999999999999887655 788999999999988 99
Q ss_pred HHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHH
Q 038109 224 VEEAFVLLRRMVDDGQS--VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301 (324)
Q Consensus 224 ~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (324)
+++|.+.|++..+.... -+...|..+..+|...|++++|...++...+.... +...+..+...+...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998875311 36788888999999999999999999998776433 6677888889999999999998766
Q ss_pred HHH
Q 038109 302 KEM 304 (324)
Q Consensus 302 ~~m 304 (324)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 543
No 54
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=1.2e-11 Score=109.56 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=111.7
Q ss_pred cCcHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 038109 151 GKRME-------EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD-ARTYDALVLGACRAG 222 (324)
Q Consensus 151 ~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g 222 (324)
.|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|++..+.... + ...|...+..+.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhc
Confidence 56665 77788887775222335777888888888888888888888888875332 3 357888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHH
Q 038109 223 RVEEAFVLLRRMVDDGQSVLYSTYAHVMGA-LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFIL 301 (324)
Q Consensus 223 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 301 (324)
++++|.++|++..+... .+...|...... +...|+.++|..+|+...+.. +-++..|..++..+.+.|+.++|..+|
T Consensus 371 ~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 88888888888876421 122333222222 335889999999998877653 236788888999999999999999999
Q ss_pred HHHHhCC
Q 038109 302 KEMNKRD 308 (324)
Q Consensus 302 ~~m~~~~ 308 (324)
++....+
T Consensus 449 ~~al~~~ 455 (530)
T 2ooe_A 449 ERVLTSG 455 (530)
T ss_dssp HHHHHSC
T ss_pred HHHHhcc
Confidence 9988764
No 55
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=1.1e-12 Score=111.38 Aligned_cols=297 Identities=10% Similarity=-0.001 Sum_probs=208.5
Q ss_pred CCCccchhHHHHHHHHhhhcCC-CCCCCHHHHHHHHHHHh--cCCCHHHHH-----------HHHHHHHhcCCCCCc---
Q 038109 8 PTKFLIPQSVLVTRSFTKSGAF-PDEPTSAYYDDLVNAAG--HERDLETVR-----------YLLNKRARDCCFNTA--- 70 (324)
Q Consensus 8 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~--~~~~~~~a~-----------~~~~~m~~~~~~~~~--- 70 (324)
...+++++|..+++.+...... ...++...|-.++..-. ..++++.+. +.++.+.....+.+.
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 3467788999988888775522 12344444455443321 122333333 555555432111111
Q ss_pred -hhhHhhhhchhhhhhHHHHHHHHHHHhcC---CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--C---C-C
Q 038109 71 -NTFNFITNTENSLSVLSDLCRTLARLDKG---FPR----KSAYDTLIGRLCKLKKIDEALRVVDIMAEGG--F---G-L 136 (324)
Q Consensus 71 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~---~-~ 136 (324)
..+......+...|++++|...+++..+. .++ ..+|..+...|...|++++|+..+++..+.- . . .
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 11222566778899999999999998654 243 2378899999999999999999999887521 1 1 1
Q ss_pred ChhhHHHHHHHHHccCcHHHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHH-----CCCCC
Q 038109 137 SAITFHPILSVLTRGKRMEEAWGLMEVMKEIR----VS-PDLTAYNYLLTAYCFKGNLTATSGVLKKMEE-----EKLGA 206 (324)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~ 206 (324)
...+++.+...|...|++++|...+++..+.. -. ....++..+..+|...|++++|...|++..+ .....
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 24578888899999999999999999876531 11 1135788899999999999999999998876 33133
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHhCCCCCCcCHh
Q 038109 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQSVLYSTYAHVMGALLRLGY---YAQAVKFVMVCGGRDIKLDTE 279 (324)
Q Consensus 207 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~ 279 (324)
...++..+...|.+.|++++|.+.+++..+. +.+.....+..+...+...|+ +++|..+++.... ......
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~ 340 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHH
Confidence 4678899999999999999999999987643 222223345667777888888 8888888877632 223455
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 280 LFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.+..+...|.+.|++++|.+.+++..+
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777889999999999999999998754
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=1.5e-12 Score=98.47 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=75.8
Q ss_pred hhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038109 71 NTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149 (324)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 149 (324)
.+|..+...+...|++++|.+.|++..+..| +..+|..+...|.+.|++++|...+.+....... +...+..+...+.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHH
Confidence 3444444444444555555554444443333 2334444555555555555555555544443221 3334444444444
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229 (324)
Q Consensus 150 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 229 (324)
..++++.+...+.+..+.. +.+...+..+..+|.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|++++|.+
T Consensus 85 ~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555554444432 123444444445555555555555555554444332 44445555555555555555555
Q ss_pred HHHHHH
Q 038109 230 LLRRMV 235 (324)
Q Consensus 230 ~~~~m~ 235 (324)
.|++..
T Consensus 163 ~~~~al 168 (184)
T 3vtx_A 163 YFKKAL 168 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=4.9e-12 Score=104.03 Aligned_cols=218 Identities=9% Similarity=-0.018 Sum_probs=174.2
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHc-------cCCH-------HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 038109 87 SDLCRTLARLDKGFP-RKSAYDTLIGRLCK-------LKKI-------DEALRVVDIMAEGGFGLSAITFHPILSVLTRG 151 (324)
Q Consensus 87 ~~a~~~~~~~~~~~p-~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 151 (324)
++|...|++.....| +...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..+...+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 678888888876666 56688888877763 5886 99999999999841222566899999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSPD-LT-AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC-RAGRVEEAF 228 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~ 228 (324)
|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.+.. +...|........ ..|+.++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999985 343 33 8999999999999999999999999987543 4555554443322 379999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC-CCc--CHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD-IKL--DTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
++|++..+.. +-+...+..++..+.+.|++++|..+|+...... +.| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987652 2356778888999999999999999999998753 344 46788888999999999999999999987
Q ss_pred hCC
Q 038109 306 KRD 308 (324)
Q Consensus 306 ~~~ 308 (324)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 643
No 58
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=1.6e-11 Score=106.92 Aligned_cols=276 Identities=11% Similarity=-0.044 Sum_probs=179.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----C---CCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcC---
Q 038109 31 DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD-----C---CFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--- 99 (324)
Q Consensus 31 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 99 (324)
.......||.+-..+...|++++|++.|++.++- + .+....+|+.+..+|...|++++|...+++..+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 4455677999999999999999999999887541 1 1223467889999999999999999998876321
Q ss_pred -----CC-CHHHHHHHHHHHHcc--CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH---HHccCcHHHHHHHHHHHHhCC
Q 038109 100 -----FP-RKSAYDTLIGRLCKL--KKIDEALRVVDIMAEGGFGLSAITFHPILSV---LTRGKRMEEAWGLMEVMKEIR 168 (324)
Q Consensus 100 -----~p-~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~ 168 (324)
.+ ...++.....++... +++++|++.|++..+.... +...+..+... +...++.++|.+.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 12 345676666555544 5799999999999875322 34444444433 345577778888888777654
Q ss_pred CCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 038109 169 VSPDLTAYNYLLTAYCF----KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYS 244 (324)
Q Consensus 169 ~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 244 (324)
. .+..++..+...+.. .|++++|.+.+++....... +...+..+...|...|++++|...+++..+... -+..
T Consensus 206 p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 282 (472)
T 4g1t_A 206 P-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAY 282 (472)
T ss_dssp S-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHH
T ss_pred C-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHH
Confidence 2 245555555544444 45678888888888776554 677888888889999999999998888775431 2234
Q ss_pred HHHHHHHHHHh-------------------cCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 245 TYAHVMGALLR-------------------LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 245 ~~~~li~~~~~-------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
++..+...|.. .+..+.|...++...+... .+...+..+...|...|++++|.+.|++..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 44444333321 1224455555555544332 244556667777777777777777777766
Q ss_pred hCCCch
Q 038109 306 KRDLKM 311 (324)
Q Consensus 306 ~~~~~~ 311 (324)
+....+
T Consensus 362 ~~~~~~ 367 (472)
T 4g1t_A 362 SKELTP 367 (472)
T ss_dssp HSCCCH
T ss_pred hcCCCC
Confidence 655544
No 59
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=5e-14 Score=115.64 Aligned_cols=201 Identities=13% Similarity=0.060 Sum_probs=102.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC------CC-C
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEG------GF-GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI------RV-S 170 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~ 170 (324)
++..+...|...|++++|...+++..+. +- +....++..+...+...|++++|...+++..+. +. +
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 4444555555555555555555554432 11 112344555555555666666666655555432 11 1
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 038109 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE------KLGA-DARTYDALVLGACRAGRVEEAFVLLRRMVDD------ 237 (324)
Q Consensus 171 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------ 237 (324)
.....+..+...+...|++++|...|++..+. +..| ...++..+...|...|++++|.+.+++..+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 22345566666677777777777777666543 1111 2345666777777777777777777766542
Q ss_pred -CCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 238 -GQSVLY-------STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 238 -~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
...+.. ..+..+...+...+.+.++...+....... +.+..++..+...|.+.|++++|.+++++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111111 112222222333344444444555444432 33567778888888888999999988887653
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=4.7e-12 Score=95.76 Aligned_cols=166 Identities=14% Similarity=0.062 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038109 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181 (324)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 181 (324)
+..+|..+...|...|++++|++.|++..+.... +..++..+...+.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 3445555666666666666666666665553221 445555555555555666666555555544432 23444445555
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038109 182 AYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ 261 (324)
Q Consensus 182 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 261 (324)
.+...++++.|...+.+....... +...+..+...|.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 555555555555555555544333 44555555555555555555555555554432 1233444445555555555555
Q ss_pred HHHHHHHhCC
Q 038109 262 AVKFVMVCGG 271 (324)
Q Consensus 262 a~~~~~~~~~ 271 (324)
|...+++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.3e-12 Score=114.07 Aligned_cols=213 Identities=10% Similarity=-0.038 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhH-HHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038109 51 LETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL-SDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDI 128 (324)
Q Consensus 51 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~ 128 (324)
++++.+.++..... .+.+...+..+...+...|++ ++|.+.|++..+..| +..+|..+...|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55666667665543 244678888999999999999 999999999977777 477999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHcc---------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CChhh
Q 038109 129 MAEGGFGLSAITFHPILSVLTRG---------KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK--------GNLTA 191 (324)
Q Consensus 129 m~~~g~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~~~~~ 191 (324)
..+.. |+...+..+...+... |++++|...+++..+... .+...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 99864 6678889999999999 999999999999988653 3678899999999998 99999
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038109 192 TSGVLKKMEEEKLG--ADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMV 268 (324)
Q Consensus 192 a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (324)
|...|++..+.... -+...|..+..+|...|++++|.+.|++..+... -+...+..+...+...|++++|...+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999886541 2889999999999999999999999999886532 3456778888889999999998875533
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.51 E-value=2.5e-11 Score=114.12 Aligned_cols=220 Identities=11% Similarity=0.094 Sum_probs=159.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038109 47 HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126 (324)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 126 (324)
..+++++|.++.++. .++.+|..+..++...|++++|.+.|.+. .+...|..++..+.+.|++++|.+.|
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556677777766533 34667778888888888888888887664 45667777888888888888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 038109 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206 (324)
Q Consensus 127 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 206 (324)
...++.. ++....+.+..+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1158 QMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 7766643 23333345777788887777544332 2 245566667888888888888888888774
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHH
Q 038109 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGS 286 (324)
Q Consensus 207 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (324)
..|..+..+|++.|++++|.+.+++. -+..+|..+-.+|...|++..|...... +..++..+..++.
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN 1288 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHH
Confidence 36888888888888888888888765 2346777777778888888777765432 3346677778888
Q ss_pred HHhCcCCHHHHHHHHHHHH
Q 038109 287 KLIGLERFNEANFILKEMN 305 (324)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~ 305 (324)
.|.+.|.+++|+.+++.-.
T Consensus 1289 yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 8999999999999987654
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=117.75 Aligned_cols=285 Identities=16% Similarity=-0.040 Sum_probs=210.7
Q ss_pred CCCccchhHHHHHHHHhhhcCCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CCCC-CchhhHhhhhch
Q 038109 8 PTKFLIPQSVLVTRSFTKSGAFPDEPT--SAYYDDLVNAAGHERDLETVRYLLNKRARD----CCFN-TANTFNFITNTE 80 (324)
Q Consensus 8 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~ 80 (324)
...|.+++|...++........ .|. ...|..+...+...|++++|...+++.... +..| ...++..+...+
T Consensus 20 ~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVGTE--DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3457788888888877776421 121 357888889999999999999999987542 2122 245778888999
Q ss_pred hhhhhHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHHccCC--------------------HHHHHHHHHHHHhC-
Q 038109 81 NSLSVLSDLCRTLARLDKGF---PR----KSAYDTLIGRLCKLKK--------------------IDEALRVVDIMAEG- 132 (324)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~---p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~~- 132 (324)
...|++++|...+++..+.. ++ ..++..+...|...|+ +++|.+.+++..+.
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998875432 22 3378889999999999 99999999887542
Q ss_pred ---CCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 038109 133 ---GFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV-SPD----LTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 133 ---g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 203 (324)
+..| ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+..
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 2111 245678888899999999999999998765321 112 3478889999999999999999999876431
Q ss_pred CC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC-
Q 038109 204 LG-AD----ARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQSV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGR- 272 (324)
Q Consensus 204 ~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 272 (324)
.. ++ ..++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...++...+.
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 11 567888999999999999999999987653 2111 1557778888999999999999998776542
Q ss_pred ---CC-CcCHhHHHHHHHHHhCcCCH
Q 038109 273 ---DI-KLDTELFGSLGSKLIGLERF 294 (324)
Q Consensus 273 ---~~-~~~~~~~~~l~~~~~~~g~~ 294 (324)
+. .....++..+...+...|+.
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 21 12355667777778777765
No 64
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.48 E-value=6.1e-11 Score=111.50 Aligned_cols=236 Identities=13% Similarity=0.135 Sum_probs=174.9
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038109 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGR 112 (324)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~ 112 (324)
-++.+|..+-.++...|++++|.+.|.+. .|...|..++.++.+.|++++|.+.+....+..++....+.++.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 33567999999999999999999999653 567778889999999999999999999887655555445568899
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhH
Q 038109 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 192 (324)
|++.+++++..... + .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|
T Consensus 1177 YAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 99998888644332 2 245667777889999999999999999974 4788999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 193 SGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 193 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
.+.+++.. +..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.....
T Consensus 1241 IEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1241 VDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 99888662 667787777778888887777766543 2344556667777788888888888887776654
Q ss_pred CCCcCHhHHHHHHHHHhC--cCCHHHHHHHHH
Q 038109 273 DIKLDTELFGSLGSKLIG--LERFNEANFILK 302 (324)
Q Consensus 273 ~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~ 302 (324)
. .-....|+-+...|++ -++..++.++|.
T Consensus 1310 e-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1310 E-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3 2234455555555543 344555555544
No 65
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=6.7e-11 Score=103.00 Aligned_cols=295 Identities=12% Similarity=-0.035 Sum_probs=201.9
Q ss_pred CccchhHHHHHHHH----hhhcCCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----C-CC-CCchhhHhhh
Q 038109 10 KFLIPQSVLVTRSF----TKSGAFP-DEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD-----C-CF-NTANTFNFIT 77 (324)
Q Consensus 10 ~~~~~~a~~~~~~~----~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~-~~~~~~~~l~ 77 (324)
.|+.++|+..+..- ....... ......+|+.+..++...|++++|...+++..+- + .. ..+.++....
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 46677777655433 2222211 2334568999999999999999999999887642 1 11 1234555554
Q ss_pred hchhh--hhhHHHHHHHHHHHhcCCCC-HHHHHHHHHH---HHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-
Q 038109 78 NTENS--LSVLSDLCRTLARLDKGFPR-KSAYDTLIGR---LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR- 150 (324)
Q Consensus 78 ~~~~~--~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~- 150 (324)
.++.. .+++++|...|++..+..|+ ...+..+... +...++.++|++.+++..+... .+..++..+...+..
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~ 222 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKM 222 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHC
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHH
Confidence 44444 45799999999999877775 4455544444 4556788899999998887532 245556555544443
Q ss_pred ---cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 038109 151 ---GKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA------ 221 (324)
Q Consensus 151 ---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~------ 221 (324)
.++.++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..++..+..+|...
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~ 300 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMN 300 (472)
T ss_dssp C------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhh
Confidence 467889999999887764 346778899999999999999999999999887554 677777776665432
Q ss_pred -------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHh--HHHHHHH
Q 038109 222 -------------GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTE--LFGSLGS 286 (324)
Q Consensus 222 -------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~ 286 (324)
+..++|...++...+... .+..++..+...+...|++++|...|+...+....+... .+..+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 301 LRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN 379 (472)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 235677777877765432 344567778889999999999999999887654433221 2233332
Q ss_pred -HHhCcCCHHHHHHHHHHHHhCC
Q 038109 287 -KLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 287 -~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
.+...|+.++|+..+++..+.+
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC
Confidence 3457899999999999877544
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=4.9e-13 Score=114.40 Aligned_cols=263 Identities=13% Similarity=-0.034 Sum_probs=198.6
Q ss_pred CCCccchhHHHHHHHHhhhcCCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----C-CCCCchhhHhhhhch
Q 038109 8 PTKFLIPQSVLVTRSFTKSGAFPDEPT--SAYYDDLVNAAGHERDLETVRYLLNKRARD----C-CFNTANTFNFITNTE 80 (324)
Q Consensus 8 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~l~~~~ 80 (324)
...|++++|...++........ .|. ...|..+...+...|++++|.+.+++..+. + .+.....+..+...+
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 136 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGTE--DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhccc--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 3457788888888877776421 111 246888888999999999999999988653 1 123346788889999
Q ss_pred hhhhhHHHHHHHHHHHhcCC------C-CHHHHHHHHHHHHccCC-----------------HHHHHHHHHHHHhC----
Q 038109 81 NSLSVLSDLCRTLARLDKGF------P-RKSAYDTLIGRLCKLKK-----------------IDEALRVVDIMAEG---- 132 (324)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~------p-~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~---- 132 (324)
...|++++|...+++..+.. | ...++..+...|...|+ +++|++.+++..+.
T Consensus 137 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 216 (411)
T 4a1s_A 137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL 216 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999998874431 2 23378889999999999 99999999887542
Q ss_pred CCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-
Q 038109 133 GFG-LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS-PD----LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG- 205 (324)
Q Consensus 133 g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 205 (324)
+.. ....++..+...+...|++++|...+++..+.... ++ ..++..+..+|...|++++|...+++.......
T Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 217 GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 111 12357788888999999999999999987653211 11 337888999999999999999999987653211
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 206 ----ADARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQS-VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 206 ----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
....++..+...|...|++++|.+.+++.... +.. ....++..+...|...|++++|...++...+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 297 GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 12567888999999999999999999987653 111 12457778888999999999999998877553
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.6e-12 Score=106.55 Aligned_cols=238 Identities=14% Similarity=0.042 Sum_probs=170.1
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-------CCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcC------
Q 038109 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARD-------CCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG------ 99 (324)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 99 (324)
.+...+..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34567888999999999999999999998863 23344567888999999999999999999887533
Q ss_pred --CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHhC--
Q 038109 100 --FP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEG------GFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEI-- 167 (324)
Q Consensus 100 --~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 167 (324)
.| ...++..+...|...|++++|.+.+++..+. +..| ...++..+...+...|++++|...+++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 12 2447889999999999999999999998764 2222 3567888889999999999999999998764
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHhcCCHHHHH
Q 038109 168 ----RVSP-DLTAYNYLLTAYCFKGNLTATSGVLKKMEEE-------KLGAD-------ARTYDALVLGACRAGRVEEAF 228 (324)
Q Consensus 168 ----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~-------~~~~~~li~~~~~~g~~~~a~ 228 (324)
+..| ...++..+..+|...|++++|...+++..+. ...+. ...+..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2122 3567888999999999999999999988753 11111 122223333344455566666
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
..++..... ...+..++..+...|.+.|++++|..+++...+
T Consensus 265 ~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666543 234567788899999999999999999987654
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=2.2e-12 Score=106.75 Aligned_cols=265 Identities=17% Similarity=-0.034 Sum_probs=197.4
Q ss_pred CCCccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CCCC-CchhhHhhhhchhh
Q 038109 8 PTKFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARD----CCFN-TANTFNFITNTENS 82 (324)
Q Consensus 8 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~ 82 (324)
...|.+++|...++................|..+...+...|++++|.+.+++..+. +..| ...++..+...+..
T Consensus 16 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 346788889888888777642111001467888899999999999999999987642 2122 24577888899999
Q ss_pred hhhHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHHccCC--------------------HHHHHHHHHHHHhC---
Q 038109 83 LSVLSDLCRTLARLDKGF---PR----KSAYDTLIGRLCKLKK--------------------IDEALRVVDIMAEG--- 132 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~---p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~~--- 132 (324)
.|++++|...+++..+.. ++ ..++..+...+...|+ +++|.+.+++..+.
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998874322 23 2378889999999999 99999999887542
Q ss_pred -CCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 038109 133 -GFG-LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR----V-SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205 (324)
Q Consensus 133 -g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 205 (324)
+.. ....++..+...+...|++++|...+++..+.. . .....++..+...+...|++++|...+++..+....
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 111 124567788888999999999999999876531 1 112347888899999999999999999987643111
Q ss_pred -CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 206 -AD----ARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQS-VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 206 -~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
++ ..++..+...+...|++++|...+++.... +.. ....++..+...+...|++++|...++...+.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 12 567888899999999999999999987643 211 12456778889999999999999999887653
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=1.2e-10 Score=98.38 Aligned_cols=264 Identities=12% Similarity=0.015 Sum_probs=184.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCCc-h----hhHhhhhchhhhhhHHHHHHHHHHHhcCC---CCH----HHHHH
Q 038109 41 LVNAAGHERDLETVRYLLNKRARDCCFNTA-N----TFNFITNTENSLSVLSDLCRTLARLDKGF---PRK----SAYDT 108 (324)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~~~~ 108 (324)
....+...|+++.|...+++..... +++. . .+..+...+...|++++|...+++..... ++. .++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3345567899999999999887653 2222 1 45666777888999999999988874322 222 24667
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCC----CCHHHHH
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEG----GFG--L-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS----PDLTAYN 177 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~ 177 (324)
+...+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++....... ....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 788899999999999999887652 222 2 2345666778888999999999999987654321 1245677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHH
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGAD-ARTYD-----ALVLGACRAGRVEEAFVLLRRMVDDGQSV---LYSTYAH 248 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ 248 (324)
.+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 888889999999999999998765321111 11121 23344778999999999998876543211 1234566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCC----CCCcCH-hHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 249 VMGALLRLGYYAQAVKFVMVCGGR----DIKLDT-ELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 778889999999999988776432 222222 366667788889999999999988764
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=3.1e-11 Score=102.21 Aligned_cols=295 Identities=11% Similarity=0.047 Sum_probs=203.2
Q ss_pred CCccchhHHHHHHHHhhhcC-CCCCCCHHHHHHHHHHHh--cCCCH---------HHHHHHHHHHHhcCCCCCc----hh
Q 038109 9 TKFLIPQSVLVTRSFTKSGA-FPDEPTSAYYDDLVNAAG--HERDL---------ETVRYLLNKRARDCCFNTA----NT 72 (324)
Q Consensus 9 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~--~~~~~---------~~a~~~~~~m~~~~~~~~~----~~ 72 (324)
...++++|..+++.+..... ....++...|-.++..-. ..+.+ +...+.++.+.....+.+. ..
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~ 103 (378)
T 3q15_A 24 RQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYS 103 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHH
Confidence 45667888888887665442 112344444555554311 01111 1222555555432111111 12
Q ss_pred hHhhhhchhhhhhHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CC-Chh
Q 038109 73 FNFITNTENSLSVLSDLCRTLARLDKGF---PR----KSAYDTLIGRLCKLKKIDEALRVVDIMAEG----GF-GL-SAI 139 (324)
Q Consensus 73 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~-~~~ 139 (324)
+......+...|++++|...+++..+.. ++ ..++..+...|...|+++.|...+++..+. +- .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 2334556678999999999999986542 33 237888999999999999999999988752 11 11 245
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHH-----CCCCCCHH
Q 038109 140 TFHPILSVLTRGKRMEEAWGLMEVMKEI----RVS-PDLTAYNYLLTAYCFKGNLTATSGVLKKMEE-----EKLGADAR 209 (324)
Q Consensus 140 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~ 209 (324)
+++.+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|...|++..+ .... ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 7788889999999999999999887653 211 1245788899999999999999999998876 4333 377
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHhCCCCCCcCHhHHH
Q 038109 210 TYDALVLGACRAGRVEEAFVLLRRMVDDG----QSVLYSTYAHVMGALLRLGY---YAQAVKFVMVCGGRDIKLDTELFG 282 (324)
Q Consensus 210 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~ 282 (324)
++..+...|.+.|++++|...+++..+.. .+.....+..+-..+...++ +.+|...++.... .......+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~ 340 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHH
Confidence 88899999999999999999999987642 22223445555566777788 8888888877432 222345667
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 283 SLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 283 ~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.+...|.+.|++++|.+.|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999999998754
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=2.6e-11 Score=91.29 Aligned_cols=158 Identities=10% Similarity=0.000 Sum_probs=64.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038109 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187 (324)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 187 (324)
.+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhc
Confidence 33334444444444444444333321 1123333344444444444444444444433321 123333444444444444
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 188 NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267 (324)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 267 (324)
++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|...++
T Consensus 91 ~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444433221 33444444444444444444444444443322 1223344444444444444444444444
Q ss_pred Hh
Q 038109 268 VC 269 (324)
Q Consensus 268 ~~ 269 (324)
..
T Consensus 169 ~~ 170 (186)
T 3as5_A 169 KA 170 (186)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 72
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=3.5e-10 Score=100.17 Aligned_cols=217 Identities=8% Similarity=-0.030 Sum_probs=169.6
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 038109 87 SDLCRTLARLDKGFP-RKSAYDTLIGRLCK-------LKKID-------EALRVVDIMAEGGFGLSAITFHPILSVLTRG 151 (324)
Q Consensus 87 ~~a~~~~~~~~~~~p-~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 151 (324)
..+..+|++.....| +...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 466778888766666 56688888888775 78987 8999999998732334678889999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSPD--LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG-ACRAGRVEEAF 228 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~ 228 (324)
|++++|..+|++..+. .|+ ...|..++..+.+.|++++|..+|++..+.... +...|...... +...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999985 343 358999999999999999999999999876332 33333332222 34689999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCC-Cc--CHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDI-KL--DTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
.+|+...+.. +-+...+..++..+.+.|+.++|..+|+.....+. .| ....|...+....+.|+.+.+.++++++.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887652 23467888899999999999999999999877532 22 24478888888888999999999999886
Q ss_pred hC
Q 038109 306 KR 307 (324)
Q Consensus 306 ~~ 307 (324)
+.
T Consensus 491 ~~ 492 (530)
T 2ooe_A 491 TA 492 (530)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=3e-11 Score=90.88 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=143.0
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038109 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217 (324)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 217 (324)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.... +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3456777888899999999999999987754 346788999999999999999999999999887543 78889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHH
Q 038109 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA 297 (324)
Q Consensus 218 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 297 (324)
+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988753 3466788888899999999999999999987764 34678899999999999999999
Q ss_pred HHHHHHHHhC
Q 038109 298 NFILKEMNKR 307 (324)
Q Consensus 298 ~~~~~~m~~~ 307 (324)
.+.+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999988654
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=1.6e-11 Score=111.71 Aligned_cols=162 Identities=15% Similarity=0.064 Sum_probs=95.9
Q ss_pred hhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038109 71 NTFNFITNTENSLSVLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149 (324)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 149 (324)
..++.+..++.+.|++++|.+.|++..+..|+ ..+|..+...|.+.|++++|++.|++..+.... +...|..+...+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 45555555566666666666666555554443 445666666666666666666666666553221 3455666666666
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229 (324)
Q Consensus 150 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 229 (324)
+.|++++|.+.|++..+... -+...|+.+..+|...|++++|.+.|++..+.... +...|..+..++...|++++|.+
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHH
Confidence 66666666666666555431 24556666666666666666666666666655433 45666666666666666666666
Q ss_pred HHHHHH
Q 038109 230 LLRRMV 235 (324)
Q Consensus 230 ~~~~m~ 235 (324)
.+++..
T Consensus 167 ~~~kal 172 (723)
T 4gyw_A 167 RMKKLV 172 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.37 E-value=1.1e-10 Score=95.04 Aligned_cols=214 Identities=11% Similarity=-0.041 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHccCcHHHHHH
Q 038109 85 VLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEG----GFGLS-AITFHPILSVLTRGKRMEEAWG 159 (324)
Q Consensus 85 ~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~~~~~~a~~ 159 (324)
++++|...+.+. ...|...|++++|...|++..+. |-+++ ..+|+.+...|.+.|++++|..
T Consensus 32 ~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 32 KFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 467766665554 34566677777777777766542 22111 4567777777777778877777
Q ss_pred HHHHHHhCCC---CC--CHHHHHHHHHHHHhc-CChhhHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHH
Q 038109 160 LMEVMKEIRV---SP--DLTAYNYLLTAYCFK-GNLTATSGVLKKMEEEKLGA-D----ARTYDALVLGACRAGRVEEAF 228 (324)
Q Consensus 160 ~~~~m~~~~~---~~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~ 228 (324)
.+++..+... .+ -..+++.+...|... |++++|...|++..+..... + ..+++.+...+.+.|++++|.
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 7776554211 11 134677777888885 88888888888766532110 1 346777788888888888888
Q ss_pred HHHHHHHHCCCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc-C---HhHHHHHHHHHh--CcCCHHH
Q 038109 229 VLLRRMVDDGQSVLY------STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL-D---TELFGSLGSKLI--GLERFNE 296 (324)
Q Consensus 229 ~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~g~~~~ 296 (324)
..|++..+....... .+|..+..++...|++++|...++...+..+.. + ...+..++..+. ..+++++
T Consensus 179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 258 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSE 258 (292)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888887765322211 145666677788888888888888877642211 1 112344555554 4567777
Q ss_pred HHHHHHHHHhCCCchhH
Q 038109 297 ANFILKEMNKRDLKMGF 313 (324)
Q Consensus 297 a~~~~~~m~~~~~~~~~ 313 (324)
|.+.|+++. .+.|+.
T Consensus 259 A~~~~~~~~--~l~~~~ 273 (292)
T 1qqe_A 259 HCKEFDNFM--RLDKWK 273 (292)
T ss_dssp HHHHHTTSS--CCCHHH
T ss_pred HHHHhccCC--ccHHHH
Confidence 777776554 344443
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=1.1e-10 Score=98.89 Aligned_cols=228 Identities=9% Similarity=-0.076 Sum_probs=173.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhc----CCCC-CchhhHhhhhchhhhhhHHHHHHHHHHHhcC---CCC-----HHHHH
Q 038109 41 LVNAAGHERDLETVRYLLNKRARD----CCFN-TANTFNFITNTENSLSVLSDLCRTLARLDKG---FPR-----KSAYD 107 (324)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-----~~~~~ 107 (324)
.-..+...|++++|.+.+++..+. +-.+ ...++..+...+...|+++.|...+.+..+. .++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344567899999999999998763 1111 2367888999999999999999999887432 222 23788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 038109 108 TLIGRLCKLKKIDEALRVVDIMAEG----GFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEI----RV-SPDLTAYN 177 (324)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~ 177 (324)
.+...|...|++++|++.+++..+. +-.+ ...++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988753 1111 1247888899999999999999999987762 22 34567889
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcC-HHHHHHH
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEE----KLGADARTYDALVLGACRAGR---VEEAFVLLRRMVDDGQSVL-YSTYAHV 249 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l 249 (324)
.+...|.+.|++++|...+++..+. +-......+..+...+...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999987643 111123346778888889999 77777777665 33333 4567778
Q ss_pred HHHHHhcCCHHHHHHHHHHhCC
Q 038109 250 MGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~ 271 (324)
...|...|++++|...++...+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999977643
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=1.5e-11 Score=99.18 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=156.2
Q ss_pred hhhhHHHHHHHHHHHhcCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CCC-CChhhHHHHHHHHHccC
Q 038109 82 SLSVLSDLCRTLARLDKGF-P-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEG------GFG-LSAITFHPILSVLTRGK 152 (324)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~~-p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~-~~~~~~~~li~~~~~~~ 152 (324)
....+++|.+++....... | ...++..+...|...|++++|+..+++..+. +-. ....++..+...+...|
T Consensus 20 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 99 (283)
T 3edt_B 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99 (283)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence 3445666666666665433 3 3448899999999999999999999998864 222 24567888999999999
Q ss_pred cHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC------CCCC-CHHHHHHHHHHH
Q 038109 153 RMEEAWGLMEVMKEI------R-VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE------KLGA-DARTYDALVLGA 218 (324)
Q Consensus 153 ~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~ 218 (324)
++++|...+++..+. . .+....++..+...|...|++++|...+++..+. +..| ...++..+...|
T Consensus 100 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999988764 1 1234677889999999999999999999988764 1122 356788899999
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCcCH-HHHHHHHHHHHhcCC------HHHHHHHHHHhCCCCCCcCHhHHHHH
Q 038109 219 CRAGRVEEAFVLLRRMVDD-------GQSVLY-STYAHVMGALLRLGY------YAQAVKFVMVCGGRDIKLDTELFGSL 284 (324)
Q Consensus 219 ~~~g~~~~a~~~~~~m~~~-------~~~p~~-~~~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (324)
...|++++|.+.+++..+. ...+.. ..+..+.......+. +..+...+...... .+....++..+
T Consensus 180 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 258 (283)
T 3edt_B 180 LKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSL 258 (283)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 9999999999999988753 112222 223333333332222 33333333332222 22345678889
Q ss_pred HHHHhCcCCHHHHHHHHHHHHh
Q 038109 285 GSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 285 ~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
...|.+.|++++|.+++++..+
T Consensus 259 a~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 259 GALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=6.5e-11 Score=107.71 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=118.5
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038109 101 PR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYL 179 (324)
Q Consensus 101 p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 179 (324)
|+ ..+|+.+...|.+.|++++|++.|++..+.... +..+|..+...+.+.|++++|...|++..+... -+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 53 447788888888888888888888887764322 466777777777888888888888877776532 246677777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038109 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259 (324)
Q Consensus 180 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 259 (324)
..+|...|++++|.+.|++..+.... +...|+.+..+|.+.|++++|++.|++..+... -+...+..+...+...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccH
Confidence 77777788888888887777766544 567777777777777777777777777765421 2355666677777777777
Q ss_pred HHHHHHHHHhCC
Q 038109 260 AQAVKFVMVCGG 271 (324)
Q Consensus 260 ~~a~~~~~~~~~ 271 (324)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666544
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=4.9e-10 Score=87.66 Aligned_cols=195 Identities=14% Similarity=-0.032 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038109 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181 (324)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 181 (324)
+...|......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 44566667777777777777777777777654435666666677777777777777777777776542 24566777777
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHH
Q 038109 182 AYCFKGNLTATSGVLKKMEEEKLGADA-------RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL---YSTYAHVMG 251 (324)
Q Consensus 182 ~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~ 251 (324)
+|...|++++|...|++..+..+. +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 777788888888887777765433 34 44666677777788888888888877654 343 345555555
Q ss_pred HHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 252 ALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
.+...|+ ..++.+...+ ..+...|..... ...+.+++|...+++..+.+
T Consensus 162 ~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 5544433 3344444432 223444443332 23466788888888776543
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=4.6e-11 Score=96.26 Aligned_cols=226 Identities=13% Similarity=0.017 Sum_probs=157.8
Q ss_pred HhcCCCHHHHHHHHHHHHhc-------CCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcC--------CC-CHHHHHH
Q 038109 45 AGHERDLETVRYLLNKRARD-------CCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG--------FP-RKSAYDT 108 (324)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p-~~~~~~~ 108 (324)
....|++++|...+++..+. ..+....++..+...+...|++++|...+++..+. .| ...+|..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45677888888887776652 22334567888999999999999999999987533 23 2348899
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC------CCCC-CHH
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEG------G-FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI------RVSP-DLT 174 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~ 174 (324)
+...|...|++++|.+.+++..+. . .+....++..+...+...|++++|...+++..+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998764 1 1224677888999999999999999999998765 1122 356
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCC
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEE-------KLGAD-ARTYDALVLGACRAGRVE------EAFVLLRRMVDDGQS 240 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~-~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~ 240 (324)
++..+..+|...|++++|...+++..+. ...+. ...|..+...+...+... ++...++.... ...
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 7889999999999999999999988753 11122 223333333333333322 22222221111 112
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 241 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
....++..+...|...|++++|..+++...+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2356678888999999999999999988755
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=8.2e-10 Score=86.38 Aligned_cols=155 Identities=9% Similarity=-0.088 Sum_probs=129.4
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 038109 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215 (324)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 215 (324)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|...|++..+..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567788888899999999999999999998765467788888999999999999999999999987655 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcC---HhHHHHHH
Q 038109 216 LGACRAGRVEEAFVLLRRMVDDGQSVLY-------STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD---TELFGSLG 285 (324)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 285 (324)
.+|...|++++|.+.+++..+... .+. ..|..+-..+...|++++|...++...+.. |+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 999999999999999999886532 223 457777788899999999999999998863 43 56777788
Q ss_pred HHHhCcCCH
Q 038109 286 SKLIGLERF 294 (324)
Q Consensus 286 ~~~~~~g~~ 294 (324)
..|...|+.
T Consensus 161 ~~~~~~~~~ 169 (228)
T 4i17_A 161 VLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888766554
No 82
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.28 E-value=8.4e-09 Score=89.33 Aligned_cols=212 Identities=14% Similarity=0.031 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----CcHHHHH
Q 038109 86 LSDLCRTLARLDKGFPRKSAYDTLIGRLCKLK---KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG----KRMEEAW 158 (324)
Q Consensus 86 ~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----~~~~~a~ 158 (324)
.+.+..++.......|+ ++..+...|...| +.++|++.|++..+.|.. +...+..+...|... ++.++|.
T Consensus 161 ~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 161 LDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp HHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 34444455555555555 7777888888888 889999999988887653 555445666666554 6889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 038109 159 GLMEVMKEIRVSPDLTAYNYLLTA-Y--CFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG-----RVEEAFVL 230 (324)
Q Consensus 159 ~~~~~m~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~ 230 (324)
..|+... .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++++|.+.
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9998877 33 44556666665 3 45788999999999888775 6677777777776 45 88999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhC----cCCHHHHHHHHH
Q 038109 231 LRRMVDDGQSVLYSTYAHVMGALLR----LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIG----LERFNEANFILK 302 (324)
Q Consensus 231 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 302 (324)
|++.. .| +...+..|-..|.. ..++++|..+++...+.|. +.....|...|.. ..+.++|...|+
T Consensus 310 ~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 98776 33 34455555555554 3388999999988888763 3445566666664 458888998888
Q ss_pred HHHhCCCchhHHH
Q 038109 303 EMNKRDLKMGFKL 315 (324)
Q Consensus 303 ~m~~~~~~~~~~~ 315 (324)
...+.|.......
T Consensus 383 ~A~~~g~~~a~~~ 395 (452)
T 3e4b_A 383 LAKAQDTPEANDL 395 (452)
T ss_dssp HHHTTCCHHHHHH
T ss_pred HHHHCCCHHHHHH
Confidence 8877776554433
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=8.7e-10 Score=93.27 Aligned_cols=224 Identities=9% Similarity=-0.022 Sum_probs=170.2
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCC-CCC----chhhHhhhhchhhhhhHHHHHHHHHHHhcC---CCC-----HHHHHHHH
Q 038109 44 AAGHERDLETVRYLLNKRARDCC-FNT----ANTFNFITNTENSLSVLSDLCRTLARLDKG---FPR-----KSAYDTLI 110 (324)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-----~~~~~~li 110 (324)
.+...|++++|...+++..+.-. .++ ..++..+..+|...|+++.|...+++..+. .++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 45688999999999999876311 122 357788899999999999999999887432 222 33788999
Q ss_pred HHHHccCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHccCcHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 038109 111 GRLCKLKKIDEALRVVDIMAEG----GFG-LSAITFHPILSVLTRGKRMEEAWGLMEVMKE-----IRVSPDLTAYNYLL 180 (324)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~li 180 (324)
..|...|++++|.+.|++..+. +.. ....++..+...+...|++++|...+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 9999999999999999988752 211 1235778888899999999999999998876 33 23477888999
Q ss_pred HHHHhcCChhhHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcC-HHHHHHHHHH
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEK----LGADARTYDALVLGACRAGR---VEEAFVLLRRMVDDGQSVL-YSTYAHVMGA 252 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~ 252 (324)
..|.+.|++++|...+++..+.. -......+..+...+...++ +++|+..+++ .+..|+ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 99999999999999999887642 22224456667777778888 7777777765 333333 3456678889
Q ss_pred HHhcCCHHHHHHHHHHhCC
Q 038109 253 LLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~ 271 (324)
|...|++++|...++...+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999877643
No 84
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.26 E-value=2.5e-10 Score=98.98 Aligned_cols=248 Identities=15% Similarity=0.032 Sum_probs=122.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038109 41 LVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL---SDLCRTLARLDKGFPRKSAYDTLIGRLCKLK 117 (324)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~ 117 (324)
+...+.+.|++++|.++|++..+.| ++..+..+...|...|+. ++|...|++..+. +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCC
Confidence 4455566777777777777776654 344455566666666666 6777777766544 4444555555344443
Q ss_pred -----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHH---HHHHHHHHHHhCC---------------------
Q 038109 118 -----KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME---EAWGLMEVMKEIR--------------------- 168 (324)
Q Consensus 118 -----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~--------------------- 168 (324)
+.++|++.|++..+.|.. ..+..+...|...+..+ ++.+.+......|
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 667777777777765532 23444444444333211 1122222221111
Q ss_pred -----------CCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHH
Q 038109 169 -----------VSPDLTAYNYLLTAYCFKG---NLTATSGVLKKMEEEKLGADARTYDALVLGACRA----GRVEEAFVL 230 (324)
Q Consensus 169 -----------~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~ 230 (324)
...+...+..+...|...| +.++|.+.|++..+.|.. +...+..+...|... +++++|.+.
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 1112225566666666666 667777777777666554 455445555555443 567777777
Q ss_pred HHHHHHCCCCcCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcC-----CHHHHHHHHH
Q 038109 231 LRRMVDDGQSVLYSTYAHVMGA-L--LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE-----RFNEANFILK 302 (324)
Q Consensus 231 ~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~ 302 (324)
|++.. .| +...+..+-.. + ...+++++|..+++...+.| ++..+..|...|. .| ++++|.+.|+
T Consensus 240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 77665 32 22333334333 2 34667777777777766655 4455555666665 34 7777777776
Q ss_pred HHH
Q 038109 303 EMN 305 (324)
Q Consensus 303 ~m~ 305 (324)
+..
T Consensus 312 ~Aa 314 (452)
T 3e4b_A 312 KAV 314 (452)
T ss_dssp TTT
T ss_pred HHh
Confidence 655
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=1.1e-09 Score=88.27 Aligned_cols=180 Identities=7% Similarity=0.005 Sum_probs=114.9
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038109 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV-SPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200 (324)
Q Consensus 122 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 200 (324)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 34555555677777778888888888887766543 1256667777788888888888888888887
Q ss_pred HCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Q 038109 201 EEKLGA-----DARTYDALVLGAC--RAG--RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 201 ~~~~~~-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
+. .| +..+...++.++. ..| +.++|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 34 2455555555522 223 788888888887543 34433334444577788888888888776554
Q ss_pred CC---------CCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 272 RD---------IKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 272 ~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
.- -+-++.+...+|......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 31 02255666455554444565 6777777777544
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=1.7e-09 Score=91.13 Aligned_cols=232 Identities=12% Similarity=0.023 Sum_probs=167.5
Q ss_pred hhhhchhhhhhHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----hhhHHH
Q 038109 75 FITNTENSLSVLSDLCRTLARLDKGFP--RKS----AYDTLIGRLCKLKKIDEALRVVDIMAEGGFG-LS----AITFHP 143 (324)
Q Consensus 75 ~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~ 143 (324)
.....+...|++++|...+++.....| +.. +++.+...+...|++++|.+.+++..+.... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344556778999999999998765544 222 5667778899999999999999987752111 12 233566
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC----CCHHHHH
Q 038109 144 ILSVLTRGKRMEEAWGLMEVMKEI----RVS--P-DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG----ADARTYD 212 (324)
Q Consensus 144 li~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~ 212 (324)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888999999999999987643 222 2 2456677888999999999999999987754221 1245778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHH----HHHHHHHhcCCHHHHHHHHHHhCCCCCCc---CHhHHHH
Q 038109 213 ALVLGACRAGRVEEAFVLLRRMVDDGQSVL--YSTYA----HVMGALLRLGYYAQAVKFVMVCGGRDIKL---DTELFGS 283 (324)
Q Consensus 213 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~ 283 (324)
.+...+...|++++|...+++.......++ ..... .....+...|++++|..+++........+ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 888999999999999999998765311111 11111 23344779999999999999987754321 1234667
Q ss_pred HHHHHhCcCCHHHHHHHHHHHHh
Q 038109 284 LGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
+...+...|++++|...+++..+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 78889999999999999998753
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=7.9e-10 Score=78.27 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 255 (324)
+..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 445555666666666666666666554332 45556666666666666666666666665443 1234455556666666
Q ss_pred cCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.|++++|..+++.+.... +.+...+..+...+.+.|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666655543 22455666666677777777777777766654
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=1.3e-09 Score=77.15 Aligned_cols=129 Identities=19% Similarity=0.142 Sum_probs=74.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
+|..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 345555666666666666666666655422 244555555566666666666666666655543 224455555666666
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
..|++++|...++++.+.... +...+..+...+.+.|++++|.+.++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666554332 455555666666666666666666665543
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=8.4e-10 Score=89.89 Aligned_cols=206 Identities=10% Similarity=-0.026 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcC-----CCC--HHHHHHHHHHHHccCCHHHH
Q 038109 50 DLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG-----FPR--KSAYDTLIGRLCKLKKIDEA 122 (324)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~--~~~~~~li~~~~~~~~~~~a 122 (324)
++++|.+.|++. ...|...|++++|...|.+.... .|. ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477887777765 23456678888888877766332 121 34788888889899999999
Q ss_pred HHHHHHHHhC----CCCC-ChhhHHHHHHHHHcc-CcHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCChhh
Q 038109 123 LRVVDIMAEG----GFGL-SAITFHPILSVLTRG-KRMEEAWGLMEVMKEIRVSP-D----LTAYNYLLTAYCFKGNLTA 191 (324)
Q Consensus 123 ~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~~~~~~ 191 (324)
+..+++..+. |-.. -..++..+...|... |++++|...|++..+..... + ..+++.+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888887652 1111 135778888888885 99999999998876532110 1 3568888899999999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHH--hcC
Q 038109 192 TSGVLKKMEEEKLGADA------RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLY------STYAHVMGALL--RLG 257 (324)
Q Consensus 192 a~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~--~~g 257 (324)
|...|++..+....... ..|..+..++...|++++|...|++..+. .|+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999998876544322 25677788888999999999999887643 2321 23444566664 456
Q ss_pred CHHHHHHHHHHhCCC
Q 038109 258 YYAQAVKFVMVCGGR 272 (324)
Q Consensus 258 ~~~~a~~~~~~~~~~ 272 (324)
++++|...++.+...
T Consensus 255 ~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRL 269 (292)
T ss_dssp THHHHHHHHTTSSCC
T ss_pred HHHHHHHHhccCCcc
Confidence 788888888776653
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=1.9e-09 Score=78.52 Aligned_cols=145 Identities=8% Similarity=-0.045 Sum_probs=102.3
Q ss_pred hhhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcH
Q 038109 76 ITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRM 154 (324)
Q Consensus 76 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 154 (324)
|...+...|++++|...+.......|+.. .+-.+...|.+.|++++|++.|++..+.... +..+|..+...+.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 45567778888888888888766555433 5667788888888888888888888775332 677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038109 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV-LKKMEEEKLGADARTYDALVLGACRAGR 223 (324)
Q Consensus 155 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~~li~~~~~~g~ 223 (324)
++|...|++..+... -+..++..+...|.+.|++++|.+. +++..+..+. +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 888888888777542 2567777888888888888766554 4666665443 56667766666665554
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=2.3e-09 Score=85.69 Aligned_cols=60 Identities=10% Similarity=-0.000 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHH
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGA--DARTYDALVLGACRA----------GRVEEAFVLLRRMVD 236 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~ 236 (324)
..+...|.+.|++++|...|++..+..+.. ....+..+..+|... |++++|...|++..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 344555666666666666666665542221 123445555555544 556666666666554
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=3.4e-09 Score=84.68 Aligned_cols=183 Identities=10% Similarity=-0.106 Sum_probs=99.9
Q ss_pred chhhHhhhhchhhhhhHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CC-ChhhHHH
Q 038109 70 ANTFNFITNTENSLSVLSDLCRTLARLDKGFPR----KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF-GL-SAITFHP 143 (324)
Q Consensus 70 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~-~~~~~~~ 143 (324)
+..+..+...+.+.|++++|...|+.+.+..|+ ..++..+..+|.+.|++++|+..|++..+... .| ...++..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 344445555556666666666666666554443 33555555666666666666666666555321 11 1233444
Q ss_pred HHHHHHc--------cCcHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 038109 144 ILSVLTR--------GKRMEEAWGLMEVMKEIRVSPDL-TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214 (324)
Q Consensus 144 li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 214 (324)
+..++.. .|++++|...|++..+.. |+. .....+.. +..+... ....+..+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHHHHHH
Confidence 4445555 555666666655555432 211 11111100 0000000 01113556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-c-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHhCCC
Q 038109 215 VLGACRAGRVEEAFVLLRRMVDDGQS-V-LYSTYAHVMGALLRL----------GYYAQAVKFVMVCGGR 272 (324)
Q Consensus 215 i~~~~~~g~~~~a~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 272 (324)
...|.+.|++++|...|++..+.... | ....+..+..+|... |++++|...++.+.+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 77888899999999999888765321 1 234566677777755 8888888888887765
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=3.4e-09 Score=96.57 Aligned_cols=185 Identities=14% Similarity=-0.001 Sum_probs=147.5
Q ss_pred HccCCHHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038109 114 CKLKKIDEALRVVDIMA--------EGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185 (324)
Q Consensus 114 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 185 (324)
...|++++|++.+++.. +. .+.+...+..+...+...|++++|...+++..+... .+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 78899999999999998 32 233567788888999999999999999999887642 367888999999999
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038109 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 265 (324)
.|++++|...|++..+.... +...|..+..++.+.|++++ .+.|++..+... -+...+..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887655 67888999999999999999 999999886532 3467788889999999999999999
Q ss_pred HHHhCCCCCCcCHhHHHHHHHHHhCcCC--------HHHHHHHHHHH
Q 038109 266 VMVCGGRDIKLDTELFGSLGSKLIGLER--------FNEANFILKEM 304 (324)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~m 304 (324)
++...+.... +...+..+..++...|+ +++|.+.+..+
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999886532 46677778888876554 45555554433
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.11 E-value=1.1e-08 Score=78.82 Aligned_cols=125 Identities=6% Similarity=-0.044 Sum_probs=71.8
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038109 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223 (324)
Q Consensus 144 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 223 (324)
+...+.+.|++++|...+++..+... -+...+..+..++...|++++|...|++..+..+. +..+|..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 56666677777777777777666532 25666667777777777777777777777665444 56666666666654443
Q ss_pred --HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 224 --VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 224 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
.+.+...++... ...|....+...-.++...|++++|...|++..+.
T Consensus 138 ~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 138 QEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 233444444432 11222222233334455566777777777777664
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=1.3e-08 Score=82.08 Aligned_cols=179 Identities=12% Similarity=-0.021 Sum_probs=131.1
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 89 LCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGF-GLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 89 a~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
+...|+++... .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66777776544 35666667888999999999999999998877654 23667788889999999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHH--HHhcC--ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038109 167 IRVSP-----DLTAYNYLLTA--YCFKG--NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 167 ~~~~~-----~~~~~~~li~~--~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 237 (324)
. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 45 34555556555 33334 899999999998765 345444455555889999999999999876542
Q ss_pred -----C----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC
Q 038109 238 -----G----QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 238 -----~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (324)
. -+-+..++..+|......|+ .|.+++.++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 0 12355666566666666776 8888998888754
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=3.4e-09 Score=96.55 Aligned_cols=173 Identities=9% Similarity=-0.088 Sum_probs=126.6
Q ss_pred hcCCCHHHHHHHHHHHH--------hcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHcc
Q 038109 46 GHERDLETVRYLLNKRA--------RDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKL 116 (324)
Q Consensus 46 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~ 116 (324)
...|++++|.+.+++.. +. .+.+...+..+..++...|++++|...++++.+..| +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 32 244556777778888888888888888888876666 556788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 038109 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVL 196 (324)
Q Consensus 117 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 196 (324)
|++++|++.|++..+.... +...|..+...+.+.|++++ ...|++..+... .+...|..+..++.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888775322 56677778888888888888 888888777542 35677788888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038109 197 KKMEEEKLGADARTYDALVLGACRAGR 223 (324)
Q Consensus 197 ~~m~~~~~~~~~~~~~~li~~~~~~g~ 223 (324)
++..+.+.. +...+..+..++...++
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 877765433 35667667777666554
No 97
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.07 E-value=1.5e-08 Score=83.11 Aligned_cols=228 Identities=12% Similarity=-0.010 Sum_probs=150.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038109 47 HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVV 126 (324)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 126 (324)
..|++++|.+++++..+.. +.. + +...++++.|...|.+. ...|...|++++|...|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHH
Confidence 3577888888888776541 111 1 11146677777665543 55777888999998888
Q ss_pred HHHHhC----CCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHH
Q 038109 127 DIMAEG----GFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEI----RVSP-DLTAYNYLLTAYCFKGNLTATSGVL 196 (324)
Q Consensus 127 ~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 196 (324)
.+..+. |-.+ -..+|+.+...|.+.|++++|...+++..+. |-.. ...+++.+...|.. |++++|...|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 877652 1111 1357778888888889999998888876543 2111 24567788888888 9999999998
Q ss_pred HHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 197 KKMEEEKLGA-----DARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQSVL-YSTYAHVMGALLRLGYYAQAVKFV 266 (324)
Q Consensus 197 ~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 266 (324)
++..+..... ...+++.+...|.+.|++++|++.|++.... +..+. ..++..+...+...|++++|...+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8766431111 1457788888999999999999999887653 22222 225666666777789999999999
Q ss_pred HHhCCCCCCc-C---HhHHHHHHHHHhCcCCHHHHHHH
Q 038109 267 MVCGGRDIKL-D---TELFGSLGSKLIGLERFNEANFI 300 (324)
Q Consensus 267 ~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~a~~~ 300 (324)
+... ..... + ......++..+ ..|+.+.+.++
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8887 42211 1 12344455555 45776666553
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.06 E-value=1.9e-08 Score=77.44 Aligned_cols=129 Identities=10% Similarity=-0.052 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 255 (324)
.+.+..+|.+.|++++|...|++..+..+. +...+..+..++...|++++|...|++..+... -+..++..+...+..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 344888999999999999999999988665 789999999999999999999999999987532 346677777777766
Q ss_pred cCCH--HHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 256 LGYY--AQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 256 ~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
.|+. ..+...+..... ..|....+.....++...|++++|...|++..+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 6543 344555544432 23333334445666777899999999999987544
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=5.9e-08 Score=74.91 Aligned_cols=165 Identities=11% Similarity=-0.079 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHCCCCCCHHHHHH
Q 038109 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG----NLTATSGVLKKMEEEKLGADARTYDA 213 (324)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~ 213 (324)
...+..+-..|...+++++|...|++..+.| +...+..+-..|.. + ++++|.+.|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444444444444444444444433 23333344444443 3 4455555555444432 3344444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHHHHhCCCCCCcCHhHHHHH
Q 038109 214 LVLGACR----AGRVEEAFVLLRRMVDDGQS-VLYSTYAHVMGALLR----LGYYAQAVKFVMVCGGRDIKLDTELFGSL 284 (324)
Q Consensus 214 li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (324)
|...|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .+++++|..+++...+.+ .+...+..|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHH
Confidence 4444444 44555555555554443321 013334444444444 445555555555554431 122334444
Q ss_pred HHHHhCc-C-----CHHHHHHHHHHHHhCCCch
Q 038109 285 GSKLIGL-E-----RFNEANFILKEMNKRDLKM 311 (324)
Q Consensus 285 ~~~~~~~-g-----~~~~a~~~~~~m~~~~~~~ 311 (324)
...|... | +.++|...|++..+.|...
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 4444322 1 5555555555555554433
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=1.4e-08 Score=90.58 Aligned_cols=155 Identities=12% Similarity=-0.037 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHH
Q 038109 48 ERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVV 126 (324)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 126 (324)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+..| +...|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467788888888776642 34457777788888888888888888888877666 4567788888888888888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHHCC
Q 038109 127 DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK---GNLTATSGVLKKMEEEK 203 (324)
Q Consensus 127 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~ 203 (324)
++..+... .+...+..+...+.+.|++++|.+.+++..+... .+...+..+..++... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88877532 2566777778888888888888888888776542 3566777778888888 88888888888877765
Q ss_pred CC
Q 038109 204 LG 205 (324)
Q Consensus 204 ~~ 205 (324)
..
T Consensus 159 p~ 160 (568)
T 2vsy_A 159 VG 160 (568)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=3.1e-09 Score=79.57 Aligned_cols=157 Identities=12% Similarity=0.015 Sum_probs=78.0
Q ss_pred hhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccC
Q 038109 75 FITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV-LTRGK 152 (324)
Q Consensus 75 ~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~~ 152 (324)
.....+...|++++|...+++..+..| +...+..+...+...|++++|+..+++..+.. |+...+...... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 344445555666666666555544334 34455666666666666666666665554422 222222111111 11111
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA-DARTYDALVLGACRAGRVEEAFVLL 231 (324)
Q Consensus 153 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~ 231 (324)
+...|...+++..+.. +.+...+..+..++...|++++|...|++..+..+.+ +...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1223455555554432 1135555555666666666666666666655554332 2345555566666666666666655
Q ss_pred HHH
Q 038109 232 RRM 234 (324)
Q Consensus 232 ~~m 234 (324)
++.
T Consensus 168 ~~a 170 (176)
T 2r5s_A 168 RRQ 170 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.00 E-value=7e-08 Score=75.25 Aligned_cols=64 Identities=6% Similarity=-0.137 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC----chhhHhhhhchhhhhhHHHHHHHHHHHhcCCC
Q 038109 36 AYYDDLVNAAGHERDLETVRYLLNKRARDCCFNT----ANTFNFITNTENSLSVLSDLCRTLARLDKGFP 101 (324)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 101 (324)
..+..+...+.+.|++++|...|+.+.+.. |+ ...+..+..++.+.|++++|...|+++.+..|
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P 72 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 72 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 334445555666677777777777766532 22 23455566666666777777776666655444
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.00 E-value=4.3e-08 Score=76.43 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=35.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCCCCCc--CHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 249 VMGALLRLGYYAQAVKFVMVCGGRDIKL--DTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
+...+.+.|++++|...++.+.+..+.. ....+..+..+|.+.|+.++|.+.++.+...+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 3455666667777766666665542211 12345566666667777777777766665543
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=6.4e-09 Score=84.41 Aligned_cols=178 Identities=16% Similarity=0.039 Sum_probs=139.5
Q ss_pred hHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHH
Q 038109 85 VLSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEV 163 (324)
Q Consensus 85 ~~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 163 (324)
..+.....+.... |+ ...+..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...+++
T Consensus 101 ~~~~l~~~l~~~l---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 101 PEEAIRALLDXVL---PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp CHHHHHHHHHHHS---CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHc---CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3444444444443 54 447788889999999999999999999885432 677888999999999999999999998
Q ss_pred HHhCCCCCCHHHHHH-HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-c
Q 038109 164 MKEIRVSPDLTAYNY-LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS-V 241 (324)
Q Consensus 164 m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p 241 (324)
..... |+...... ....+...++.++|...+++.....+. +...+..+...+...|++++|...|++..+.... .
T Consensus 177 ~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 177 IPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp SCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred Cchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 87653 45443332 233466788889999999998887655 7889999999999999999999999999876432 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 242 LYSTYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
+...+..+...+...|+.++|...++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3567888999999999999998887654
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=6.7e-08 Score=74.62 Aligned_cols=163 Identities=11% Similarity=-0.049 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC----cHHHHHHHHHHHHhCCCCCCHHHHH
Q 038109 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK----RMEEAWGLMEVMKEIRVSPDLTAYN 177 (324)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~ 177 (324)
+..++..+...|...+++++|++.|++..+.| +...+..+-..|.. + +.++|...|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555555555666666666666665543 33444455555554 4 5666666666655543 344455
Q ss_pred HHHHHHHh----cCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 038109 178 YLLTAYCF----KGNLTATSGVLKKMEEEKLG-ADARTYDALVLGACR----AGRVEEAFVLLRRMVDDGQSVLYSTYAH 248 (324)
Q Consensus 178 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 248 (324)
.+...|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .++.++|.+.|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 55555554 55666666666665554321 014555555555555 556666666666665541 12223344
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHhCCCC
Q 038109 249 VMGALLRL-G-----YYAQAVKFVMVCGGRD 273 (324)
Q Consensus 249 li~~~~~~-g-----~~~~a~~~~~~~~~~~ 273 (324)
|-..|... | +.++|..+++...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44444432 2 5666666666555554
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=3e-08 Score=80.47 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=132.8
Q ss_pred CCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHH-H
Q 038109 135 GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYD-A 213 (324)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ 213 (324)
+.+...+..+...+...|++++|...+++..+... -+...+..+...+...|++++|...+++..... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 34556677788888999999999999999888643 367788899999999999999999999887653 4444333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc-CHhHHHHHHHHHhCcC
Q 038109 214 LVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL-DTELFGSLGSKLIGLE 292 (324)
Q Consensus 214 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 292 (324)
....+.+.++.++|.+.+++..... +.+...+..+...+...|++++|...+..+.+..... +...+..++..|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3344677888888999999887654 2456778888999999999999999999988764331 3678889999999999
Q ss_pred CHHHHHHHHHHHH
Q 038109 293 RFNEANFILKEMN 305 (324)
Q Consensus 293 ~~~~a~~~~~~m~ 305 (324)
+.++|...+++-.
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999998888754
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=2.2e-07 Score=75.53 Aligned_cols=215 Identities=8% Similarity=-0.047 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHhhhhchhhhh--hHHHHHHHHHHHhcCCC-CHHHHHHHHHHH----Hcc---CCHHH
Q 038109 52 ETVRYLLNKRARDCCFNTANTFNFITNTENSLS--VLSDLCRTLARLDKGFP-RKSAYDTLIGRL----CKL---KKIDE 121 (324)
Q Consensus 52 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p-~~~~~~~li~~~----~~~---~~~~~ 121 (324)
++|+++++.++..+ +-+...|+.--.++...+ +++++.++++.+....| +..+|+.--..+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 46666666666532 222234455444555555 56666666666554444 233443222222 222 45555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------hhhHH
Q 038109 122 ALRVVDIMAEGGFGLSAITFHPILSVLTRGKRME--EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN------LTATS 193 (324)
Q Consensus 122 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------~~~a~ 193 (324)
++++++++.+.... +..+|+--...+.+.|.++ ++++.++.+.+.... |-..|+.......+.+. +++++
T Consensus 129 EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 55555555554322 4444444444444445444 555555555554332 44444444444444443 45555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q 038109 194 GVLKKMEEEKLGADARTYDALVLGACRAGRVEE-AFVLLRRMVDDG--QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCG 270 (324)
Q Consensus 194 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (324)
+.++++....+. |...|+-+-..+.+.|+..+ +..+..+....+ -..+...+..+...+.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 555555554444 55555555555544444222 223333333211 11233444444444444555555555554443
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=9.4e-09 Score=76.92 Aligned_cols=156 Identities=9% Similarity=0.001 Sum_probs=66.1
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC
Q 038109 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG-ACRAGR 223 (324)
Q Consensus 145 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~ 223 (324)
...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...|++...... +...+..+... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcc
Confidence 334444444444444444433321 11334444444444445555555544444433221 22221111111 111112
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc-CHhHHHHHHHHHhCcCCHHHHHHHHH
Q 038109 224 VEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL-DTELFGSLGSKLIGLERFNEANFILK 302 (324)
Q Consensus 224 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (324)
..+|...+++..+.. +-+...+..+...+...|++++|...++.+.+..+.+ +...+..+...+...|+.++|...|+
T Consensus 90 ~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 223444444444321 1123444445555555555555555555555443221 23345555555555555555555555
Q ss_pred HH
Q 038109 303 EM 304 (324)
Q Consensus 303 ~m 304 (324)
+.
T Consensus 169 ~a 170 (176)
T 2r5s_A 169 RQ 170 (176)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=3.8e-07 Score=74.09 Aligned_cols=216 Identities=8% Similarity=0.029 Sum_probs=170.0
Q ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----Hcc---CcHHH
Q 038109 87 SDLCRTLARLDKGFPR-KSAYDTLIGRLCKLK--KIDEALRVVDIMAEGGFGLSAITFHPILSVL----TRG---KRMEE 156 (324)
Q Consensus 87 ~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---~~~~~ 156 (324)
++|..+.+.+....|+ ..+|+.--..+...+ +++++++.++.+...... +..+|+.--..+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 5788888888777785 557888888888888 999999999999986443 445555444444 444 78999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHHH
Q 038109 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT--ATSGVLKKMEEEKLGADARTYDALVLGACRAGR------VEEAF 228 (324)
Q Consensus 157 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~------~~~a~ 228 (324)
++.+++.+.+... -+-.+|+.-.....+.|.++ ++++.++++.+..+. |...|+.-...+.+.+. +++++
T Consensus 129 EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 9999999998754 37888888888888899998 999999999998877 89999888777777776 89999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHhCCCC--CCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQ-AVKFVMVCGGRD--IKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
+.++.+..... -|...|+.+-..+.+.|+... +..+...+...+ -..++..+..+...|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99998887543 466777777777888887444 555666655543 13377888899999999999999999999986
Q ss_pred h
Q 038109 306 K 306 (324)
Q Consensus 306 ~ 306 (324)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.97 E-value=1.9e-08 Score=89.75 Aligned_cols=162 Identities=10% Similarity=-0.092 Sum_probs=119.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 038109 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 195 (324)
.|++++|++.+++..+... -+...+..+...+...|++++|...+++..+... .+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887532 3578888999999999999999999999988643 3678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHhCCC
Q 038109 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL---GYYAQAVKFVMVCGGR 272 (324)
Q Consensus 196 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 272 (324)
|++..+.... +...+..+..+|.+.|++++|.+.|++..+... .+...+..+...+... |+.++|...+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999887554 688999999999999999999999999887532 3467788888899999 9999999999998876
Q ss_pred CCCcCHhHHH
Q 038109 273 DIKLDTELFG 282 (324)
Q Consensus 273 ~~~~~~~~~~ 282 (324)
+.. +...|.
T Consensus 158 ~p~-~~~~~~ 166 (568)
T 2vsy_A 158 GVG-AVEPFA 166 (568)
T ss_dssp TCC-CSCHHH
T ss_pred CCc-ccChHH
Confidence 533 333443
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.95 E-value=7e-09 Score=75.45 Aligned_cols=121 Identities=10% Similarity=0.023 Sum_probs=63.9
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh
Q 038109 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTA 191 (324)
Q Consensus 112 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 191 (324)
.+...|++++|++.++...... +-+...+..+...|.+.|++++|...|++..+... -+..+|..+..+|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHH
Confidence 3344455566666655554321 11233444555556666666666666666555432 245555666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHH
Q 038109 192 TSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVL-LRRMV 235 (324)
Q Consensus 192 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~ 235 (324)
|...|++..+..+. +...|..+...|.+.|+.++|.+. +++..
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66666665554333 455555566666666665544433 34444
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=5e-08 Score=79.94 Aligned_cols=223 Identities=10% Similarity=-0.012 Sum_probs=146.9
Q ss_pred CccchhHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHH
Q 038109 10 KFLIPQSVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDL 89 (324)
Q Consensus 10 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 89 (324)
.|++.+|..+++.-......+ .+...++++.|...|... ...|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-------------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-------------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-------------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-------------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 456667777776655543211 011146777777777654 3355667777887
Q ss_pred HHHHHHHhcCC---CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCcHHHH
Q 038109 90 CRTLARLDKGF---PR----KSAYDTLIGRLCKLKKIDEALRVVDIMAEG----GFGL-SAITFHPILSVLTRGKRMEEA 157 (324)
Q Consensus 90 ~~~~~~~~~~~---p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a 157 (324)
...+.+..... .+ ..+|+.+...|...|++++|+..|++..+. |-.. ...++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 77777663321 12 237788888888999999999988877642 2111 13567777788888 999999
Q ss_pred HHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 038109 158 WGLMEVMKEIRVS---P--DLTAYNYLLTAYCFKGNLTATSGVLKKMEEE----KLGAD-ARTYDALVLGACRAGRVEEA 227 (324)
Q Consensus 158 ~~~~~~m~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a 227 (324)
...+++..+.... + ...+++.+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998886653211 1 1467888889999999999999999987753 21111 23566677778888999999
Q ss_pred HHHHHHHHHCCCCcC------HHHHHHHHHHHHhcCCHHHHHHH
Q 038109 228 FVLLRRMVDDGQSVL------YSTYAHVMGALLRLGYYAQAVKF 265 (324)
Q Consensus 228 ~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~~ 265 (324)
...|++.. . .|+ ......++.++ ..|+.+.+..+
T Consensus 215 ~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999887 3 232 12344455555 56777766663
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=2.6e-07 Score=75.10 Aligned_cols=161 Identities=16% Similarity=0.088 Sum_probs=103.0
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CC----HHHHHHH
Q 038109 145 LSVLTRGKRMEEAWGLMEVMKEIR-VSPDL----TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG-AD----ARTYDAL 214 (324)
Q Consensus 145 i~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l 214 (324)
+..+...|++++|..++++..+.. ..|+. ..+..+...+...+++++|...|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 556667777777777777766532 12221 13334555666667778888888777763221 12 2357777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHhCCC----CCCc-CHhHHHH
Q 038109 215 VLGACRAGRVEEAFVLLRRMVDD-----GQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGR----DIKL-DTELFGS 283 (324)
Q Consensus 215 i~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ 283 (324)
..+|...|++++|...|++..+. +..+. ..++..+...|.+.|++++|...++...+. +..+ -..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77888888888888888776631 22222 236677777888888888888877665432 1111 2567777
Q ss_pred HHHHHhCcCC-HHHHHHHHHHHH
Q 038109 284 LGSKLIGLER-FNEANFILKEMN 305 (324)
Q Consensus 284 l~~~~~~~g~-~~~a~~~~~~m~ 305 (324)
+..+|.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 8888888884 588888877654
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=4.7e-07 Score=73.54 Aligned_cols=160 Identities=13% Similarity=0.019 Sum_probs=75.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCC-CCCh----hhHHHHHHHHHccCcHHHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEGGF-GLSA----ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS-PD----LTAYNYL 179 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l 179 (324)
+..+...|++++|.+++++..+... .|+. ..+..+...+...+++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445555555555555555554211 1111 12223444444455555555555555542211 11 2245555
Q ss_pred HHHHHhcCChhhHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHH
Q 038109 180 LTAYCFKGNLTATSGVLKKMEE----E-KLGAD-ARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQSVL-YSTYAH 248 (324)
Q Consensus 180 i~~~~~~~~~~~a~~~~~~m~~----~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ 248 (324)
..+|...|++++|...|++..+ . +..+. ..++..+...|.+.|++++|.+.+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5556666666666665555542 1 11111 234555555666666666666655554421 11111 345555
Q ss_pred HHHHHHhcC-CHHHHHHHHHHh
Q 038109 249 VMGALLRLG-YYAQAVKFVMVC 269 (324)
Q Consensus 249 li~~~~~~g-~~~~a~~~~~~~ 269 (324)
+..++.+.| ++++|...++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 555566666 345555555443
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.90 E-value=1e-06 Score=71.48 Aligned_cols=164 Identities=12% Similarity=0.040 Sum_probs=99.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-h----hhHHHHHHHHHccCcHHHHHHHHHHHHhCCC---CCC--HH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS-A----ITFHPILSVLTRGKRMEEAWGLMEVMKEIRV---SPD--LT 174 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~ 174 (324)
.+...+..+...|++++|.+.+++..+...... . ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 455567777888888888888877776432211 1 1233344555666778888877777664321 111 34
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEE---EKLG-A--DARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQSV-LY 243 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~ 243 (324)
+++.+...|...|++++|...|++..+ .... + ...+++.+...|.+.|++++|.+.+++..+. +..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677777777777888877777776652 1111 1 1246677777777777777777777765532 1111 14
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHH
Q 038109 244 STYAHVMGALLRLGYYAQA-VKFVMV 268 (324)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a-~~~~~~ 268 (324)
.+|..+...|...|++++| ...++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5566666677777777777 554544
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.88 E-value=3.8e-07 Score=70.14 Aligned_cols=128 Identities=13% Similarity=-0.085 Sum_probs=94.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 185 (324)
+..+...+...|++++|++.|++.. .|+..++..+...+.+.|++++|...+++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455667777888888888887663 4567777778888888888888888888777654 3356777778888888
Q ss_pred cCChhhHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038109 186 KGNLTATSGVLKKMEEEKLG--------------A-DARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 238 (324)
.|++++|...|++..+.... | ....+..+..+|.+.|++++|.+.|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888887765332 1 12677778888888888888888888877543
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.87 E-value=3.6e-07 Score=70.25 Aligned_cols=130 Identities=8% Similarity=0.004 Sum_probs=108.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038109 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220 (324)
Q Consensus 141 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 220 (324)
+..+...+...|++++|...+++.. .|+...+..+..+|...|++++|...|++..+.... +...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 4556677888999999999998763 568889999999999999999999999998887544 78899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCC--------------Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCC
Q 038109 221 AGRVEEAFVLLRRMVDDGQ--------------SV-LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275 (324)
Q Consensus 221 ~g~~~~a~~~~~~m~~~~~--------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (324)
.|++++|.+.|++..+... .| ....+..+..++...|++++|...++...+....
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 9999999999999887421 12 2366777888999999999999999998886543
No 118
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.82 E-value=6.7e-07 Score=80.71 Aligned_cols=219 Identities=8% Similarity=-0.030 Sum_probs=163.2
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 038109 87 SDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEAL-RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164 (324)
Q Consensus 87 ~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 164 (324)
+.+..+|++.....| ....|-..+.-+...|+.++|. ++|++.... ++.+...|...+...-+.|+++.|..+|+.+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566777665556 5668888888888889999997 999999874 4456666777888888999999999999998
Q ss_pred HhCCC---------CCC------------HHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-
Q 038109 165 KEIRV---------SPD------------LTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDALVLGACRA- 221 (324)
Q Consensus 165 ~~~~~---------~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~- 221 (324)
..... .|+ ..+|...+....+.|+.+.|..+|....+. +.. ....|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhC
Confidence 76410 132 346788888888899999999999999876 322 333443333222333
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc--CHhHHHHHHHHHhCcCCHHHHHH
Q 038109 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL--DTELFGSLGSKLIGLERFNEANF 299 (324)
Q Consensus 222 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 299 (324)
++.+.|.++|+...+. .+-+...+...+......|+.+.|..+|+........+ ....|...+..-.+.|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5589999999998875 32344555677777788999999999999998875422 35678888888888999999999
Q ss_pred HHHHHHhCC
Q 038109 300 ILKEMNKRD 308 (324)
Q Consensus 300 ~~~~m~~~~ 308 (324)
+.+++.+.-
T Consensus 563 v~~R~~~~~ 571 (679)
T 4e6h_A 563 LEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999997654
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.81 E-value=2.7e-07 Score=67.69 Aligned_cols=128 Identities=13% Similarity=0.018 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 253 (324)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34455555666666666666666666554333 45666666666666666666666666665432 12345555666666
Q ss_pred HhcCCHHHHHHHHHHhCCCCCCcCHhHHHH--HHHHHhCcCCHHHHHHHHHHH
Q 038109 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGS--LGSKLIGLERFNEANFILKEM 304 (324)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m 304 (324)
...|++++|...++...+.... +...+.. ....+.+.|++++|.+.+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666777766666666554321 3333322 233355667777777666654
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=4.4e-07 Score=66.58 Aligned_cols=127 Identities=14% Similarity=0.012 Sum_probs=76.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
.|..+...+...|++++|...|++..+... .+..++..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 455666667777777777777777665422 245566666666666777777777776666543 234556666666666
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGADARTYDA--LVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m 234 (324)
..|++++|...|++..+.... +...+.. ....+...|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777666655333 3334422 223355566666666666544
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.79 E-value=1.7e-07 Score=71.44 Aligned_cols=154 Identities=10% Similarity=-0.006 Sum_probs=71.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCh
Q 038109 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI----RVS-PDLTAYNYLLTAYCFKGNL 189 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~ 189 (324)
..|++++|.++++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644333321 1123445555555666666666666666554431 111 1234455555555666666
Q ss_pred hhHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCC
Q 038109 190 TATSGVLKKMEEE----KLGA--DARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQSV-LYSTYAHVMGALLRLGY 258 (324)
Q Consensus 190 ~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~ 258 (324)
++|...+++..+. +..| ....+..+...+...|++++|...+++.... +..+ ...++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666655544332 1011 1233445555555556666665555554321 1100 11223444444555555
Q ss_pred HHHHHHHHHHh
Q 038109 259 YAQAVKFVMVC 269 (324)
Q Consensus 259 ~~~a~~~~~~~ 269 (324)
+++|...+++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 122
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.77 E-value=6.7e-07 Score=80.69 Aligned_cols=248 Identities=8% Similarity=0.015 Sum_probs=177.4
Q ss_pred HHHHHHHHHHhcCC-------CHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHH-HHHHHHhcCCC-CHHHH
Q 038109 36 AYYDDLVNAAGHER-------DLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLC-RTLARLDKGFP-RKSAY 106 (324)
Q Consensus 36 ~~~~~ll~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~p-~~~~~ 106 (324)
..|...+..--..+ ..+++..+|++.+.. ++..+..|-..+..+...|+.++|. +++++.....| +...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 45666665443332 134566788888775 4667788888888888888888886 99998876667 45567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCC---------CCC------------hhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 038109 107 DTLIGRLCKLKKIDEALRVVDIMAEGGF---------GLS------------AITFHPILSVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~ 165 (324)
-..+...-+.|++++|.++|+++.+... .|+ ..+|...+....+.|+.+.|..+|.+..
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888999999999999999886410 132 2367777787788899999999999988
Q ss_pred hC-CCCCCHHHHHHHHHHHHhc-CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--
Q 038109 166 EI-RVSPDLTAYNYLLTAYCFK-GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV-- 241 (324)
Q Consensus 166 ~~-~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-- 241 (324)
+. +. +....|......-.+. ++.+.|.++|+...+.- .-+...|...+......|+.+.|..+|++.......+
T Consensus 462 ~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 462 RLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 76 21 1233343333333344 45899999999888762 2366777788888888999999999999988654321
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHH
Q 038109 242 LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288 (324)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 288 (324)
....|...+.--.+.|+.+.+.++.+.+.+.- |+......+++-|
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 34567777777778899999999999887753 3433444444444
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=4.4e-06 Score=68.73 Aligned_cols=170 Identities=9% Similarity=-0.053 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhh-hHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHcc-C-CHHHHH
Q 038109 48 ERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLS-VLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKL-K-KIDEAL 123 (324)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~-~-~~~~a~ 123 (324)
.+..++|+++++.++..+ +-+..+|+.--.++...+ .++++..+++.+....| +..+|+.-...+.+. + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 334456666666666542 223344555555555555 36666666666655555 344555444344333 4 556666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCcHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------
Q 038109 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRME--------EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN------- 188 (324)
Q Consensus 124 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------- 188 (324)
++++++.+.... +..+|+--...+.+.|.++ ++++.++++.+... -|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHH
Confidence 666666654322 4444443333333333333 45555555554432 244445444444444443
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038109 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRA 221 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 221 (324)
++++++.+++.....+. |...|+-+-..+.+.
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 34445555444444333 445554444444333
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=7.2e-07 Score=61.72 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038109 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221 (324)
Q Consensus 142 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 221 (324)
..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+.... +..++..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHh
Confidence 333333444444444444444433321 112334444444444444444444444444433221 344444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 038109 222 GRVEEAFVLLRRMV 235 (324)
Q Consensus 222 g~~~~a~~~~~~m~ 235 (324)
|++++|...++++.
T Consensus 91 ~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 91 GDYDEAIEYYQKAL 104 (125)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444444
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=4.7e-07 Score=62.70 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 038109 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252 (324)
Q Consensus 173 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 252 (324)
...+..+...+...|++++|.+.|+++.+.... +...+..+...+.+.|++++|...++++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 456777778888888888888888888766433 67777888888888888888888888877643 2355667777777
Q ss_pred HHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHh
Q 038109 253 LLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLI 289 (324)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 289 (324)
+...|++++|...++.+.+... .+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 8888888888888877766532 24444544444443
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=1.5e-06 Score=70.62 Aligned_cols=167 Identities=16% Similarity=0.046 Sum_probs=124.7
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC---CCC--H
Q 038109 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD-----LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKL---GAD--A 208 (324)
Q Consensus 139 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~ 208 (324)
..+...+..+...|++++|.+.++...+.....+ ...+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567788899999999999998777542211 12344566677888999999999998875322 222 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC----CC-cC
Q 038109 209 RTYDALVLGACRAGRVEEAFVLLRRMVDD----GQSV--LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD----IK-LD 277 (324)
Q Consensus 209 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-~~ 277 (324)
.+|+.+...|...|++++|...|++..+. +..+ ...++..+...|...|++++|...++...+.. .. .-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58899999999999999999999988732 1112 22578889999999999999999998765431 11 12
Q ss_pred HhHHHHHHHHHhCcCCHHHH-HHHHHHHH
Q 038109 278 TELFGSLGSKLIGLERFNEA-NFILKEMN 305 (324)
Q Consensus 278 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 305 (324)
..+|..+...|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67788899999999999999 77777653
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=6e-07 Score=62.92 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 255 (324)
+......|.+.|++++|.+.|++..+..+. +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 344444455555555555555554444332 44445555555555555555555555444322 1223344444444555
Q ss_pred cCCHHHHHHHHHHhCC
Q 038109 256 LGYYAQAVKFVMVCGG 271 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~ 271 (324)
.|++++|...|+...+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555544444
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=6.1e-08 Score=78.34 Aligned_cols=193 Identities=9% Similarity=-0.047 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 038109 34 TSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGR 112 (324)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~ 112 (324)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+..| +...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45567778888889999999999999988752 44667888888999999999999999999887777 46688888999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhH
Q 038109 113 LCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTAT 192 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 192 (324)
|...|++++|+..|++..+.... +...+...+....+ ..++. -+..........+......+... ..|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 99999999999999887763211 11111112222111 11111 22223333344444443333222 36788888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 038109 193 SGVLKKMEEEKLGAD-ARTYDALVLGACRA-GRVEEAFVLLRRMVD 236 (324)
Q Consensus 193 ~~~~~~m~~~~~~~~-~~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 236 (324)
.+.++...+. .|+ ......+-..+.+. +.+++|.++|....+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888776655 344 33334444444444 667788888887654
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.72 E-value=2.4e-07 Score=70.52 Aligned_cols=155 Identities=16% Similarity=-0.015 Sum_probs=95.7
Q ss_pred hhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCC-CChhhHHHHHHHHHccCcHH
Q 038109 82 SLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAE----GGFG-LSAITFHPILSVLTRGKRME 155 (324)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~-~~~~~~~~li~~~~~~~~~~ 155 (324)
..|++++|.+.++.+....+ ...++..+...+...|++++|...+++..+ .+.. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 45566666664433332221 233666777777777777777777776654 1111 12455666677777788888
Q ss_pred HHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCH
Q 038109 156 EAWGLMEVMKEI----RVSP--DLTAYNYLLTAYCFKGNLTATSGVLKKMEEE----KLG-ADARTYDALVLGACRAGRV 224 (324)
Q Consensus 156 ~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~ 224 (324)
+|...+++..+. +-.| ....+..+...+...|++++|...+++..+. +.. .-..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888777765543 2111 2345677778888888888888888776532 111 0123457777888888999
Q ss_pred HHHHHHHHHHHH
Q 038109 225 EEAFVLLRRMVD 236 (324)
Q Consensus 225 ~~a~~~~~~m~~ 236 (324)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
No 130
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1.5e-05 Score=65.65 Aligned_cols=218 Identities=11% Similarity=0.070 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-C-cHHHHHHHH
Q 038109 86 LSDLCRTLARLDKGFPR-KSAYDTLIGRLCKLK-KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG-K-RMEEAWGLM 161 (324)
Q Consensus 86 ~~~a~~~~~~~~~~~p~-~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~-~~~~a~~~~ 161 (324)
.++|.++++.+....|+ ..+|+.--..+...| +++++++.++.+.....+ +..+|+.--..+.+. + ++++++.++
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 35788888888777774 557887777777777 599999999999987554 667777766666665 6 889999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChh--------hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHH
Q 038109 162 EVMKEIRVSPDLTAYNYLLTAYCFKGNLT--------ATSGVLKKMEEEKLGADARTYDALVLGACRAGR-------VEE 226 (324)
Q Consensus 162 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~ 226 (324)
+.+.+... -|-.+|+.......+.|.++ ++++.++++.+..+. |...|+.....+.+.++ +++
T Consensus 149 ~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 99998754 37778877777766666676 899999999998776 99999998888888876 688
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHhCCCC-----CCcCHhHH
Q 038109 227 AFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY--------------------AQAVKFVMVCGGRD-----IKLDTELF 281 (324)
Q Consensus 227 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~ 281 (324)
+++.+++..... +-|...|+-+-..+.+.|+. .........+...+ -.+.+...
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 899988887643 23556666555555555543 23333333333322 13577888
Q ss_pred HHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 282 GSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 282 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
..+++.|...|+.++|.++++.+.++
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 88999999999999999999998543
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.71 E-value=4.5e-07 Score=63.73 Aligned_cols=97 Identities=11% Similarity=0.030 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 038109 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252 (324)
Q Consensus 173 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 252 (324)
...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344444445555555555555555554443222 34445555555555555555555555544332 1233444444445
Q ss_pred HHhcCCHHHHHHHHHHhCC
Q 038109 253 LLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~ 271 (324)
+...|++++|...++...+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555544443
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=4.4e-07 Score=72.26 Aligned_cols=128 Identities=9% Similarity=-0.073 Sum_probs=65.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHh
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL--YSTYAHVMGALLR 255 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~ 255 (324)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++.+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34455556666666666666555443 222244444445566666666666665332211 110 1234445555666
Q ss_pred cCCHHHHHHHHHHhCCCCCCcC--HhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 256 LGYYAQAVKFVMVCGGRDIKLD--TELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666666666666543222132 2233445555556666666666666665443
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=8.3e-07 Score=62.20 Aligned_cols=96 Identities=9% Similarity=-0.006 Sum_probs=49.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
.+......|.+.|++++|++.|++..+... .+..+|..+..++.+.|++++|...+++..+... .+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 444555555555555555555555554321 2444555555555555555555555555544321 23445555555555
Q ss_pred hcCChhhHHHHHHHHHHC
Q 038109 185 FKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~ 202 (324)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 555555555555555544
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=1.1e-07 Score=76.80 Aligned_cols=194 Identities=9% Similarity=-0.038 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038109 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182 (324)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 182 (324)
...+..+...+.+.|++++|+..|++..+... -+...|..+...+.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34556666677777777777777777666422 255666666777777777777777777766653 2345666677777
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 038109 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262 (324)
Q Consensus 183 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 262 (324)
|...|++++|...|++..+.+.. +...+...+....+. .++.. +..........+...... +..+ ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~-l~~l-~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSY-LTRL-IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHH-HHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHH-HHHH-HHHHHHHH
Confidence 77777777777777766543211 000111111111111 11111 111222223333333222 2222 25677777
Q ss_pred HHHHHHhCCCCCCcCHhHHHHHHHHHhCc-CCHHHHHHHHHHHHh
Q 038109 263 VKFVMVCGGRDIKLDTELFGSLGSKLIGL-ERFNEANFILKEMNK 306 (324)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 306 (324)
.+.++...+... .+......+...+.+. +.+++|.++|.+..+
T Consensus 155 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777666655431 1233333333334333 556777777776643
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=5.7e-07 Score=62.84 Aligned_cols=115 Identities=15% Similarity=-0.005 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALL 254 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 254 (324)
.+..+...+...|++++|...|++....... +...+..+...+...|++++|.+.+++..... +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444444455555555555544443222 34444444455555555555555555444321 112334444444455
Q ss_pred hcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcC
Q 038109 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE 292 (324)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 292 (324)
..|++++|...++...+... .+...+..+...+.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence 55555555555544444321 13334444444444433
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=8.6e-07 Score=61.90 Aligned_cols=115 Identities=14% Similarity=0.008 Sum_probs=55.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 44455555555555555555555555432 1234444445555555555555555555544432 123444444555555
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038109 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 222 (324)
..|++++|...|++..+.... +...+..+..++.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 555555555555554443222 3444444444444433
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.66 E-value=9e-07 Score=62.13 Aligned_cols=96 Identities=10% Similarity=-0.028 Sum_probs=50.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
.|..+...+...|++++|.+.|++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 555555556666666666666665554321 234455555555555555555555555554432 123444555555555
Q ss_pred hcCChhhHHHHHHHHHHC
Q 038109 185 FKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~ 202 (324)
..|++++|...|++..+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 555555555555555443
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=8.6e-08 Score=69.55 Aligned_cols=96 Identities=9% Similarity=-0.013 Sum_probs=50.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
.+..+...+.+.|++++|+..|++..+... -+...|..+..++...|++++|...|++..+... .+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH
Confidence 445555555555555555555555554322 1444555555555555555555555555555432 13445555555555
Q ss_pred hcCChhhHHHHHHHHHHC
Q 038109 185 FKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~ 202 (324)
..|++++|...|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555543
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=2.7e-06 Score=67.69 Aligned_cols=187 Identities=9% Similarity=-0.090 Sum_probs=104.4
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCchhhHhh-------hhchhhhhhHHHHHHHHHHHhcCCCC-----------------
Q 038109 47 HERDLETVRYLLNKRARDCCFNTANTFNFI-------TNTENSLSVLSDLCRTLARLDKGFPR----------------- 102 (324)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~p~----------------- 102 (324)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..++...+..-.+..|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777642 2233556555 34444444444443333332221111
Q ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC--HHH
Q 038109 103 -----KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD--LTA 175 (324)
Q Consensus 103 -----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~ 175 (324)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1233445666677777777777776666543 332244444456667777777777776443321 111 234
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD--ARTYDALVLGACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 237 (324)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55666677777777777777776664322133 234555566666777777777777777654
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.63 E-value=1.4e-06 Score=72.31 Aligned_cols=131 Identities=11% Similarity=-0.074 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHccCcHHHHHHHHHHHHhCC
Q 038109 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS--------------AITFHPILSVLTRGKRMEEAWGLMEVMKEIR 168 (324)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 168 (324)
...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44788889999999999999999999887532211 3566667777777777777777777766653
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 038109 169 VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEA-FVLLRRMV 235 (324)
Q Consensus 169 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 235 (324)
+.+...+..+..+|...|++++|...|++..+..+. +...+..+..++.+.|+.++| ...|+.|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235666677777777777777777777777665443 566666677777777777666 33444443
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=1.5e-06 Score=63.02 Aligned_cols=95 Identities=11% Similarity=-0.056 Sum_probs=45.4
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038109 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219 (324)
Q Consensus 140 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 219 (324)
.+..+...+.+.|++++|...|++..+... .+...|..+..+|...|++++|...|++..+..+. +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 344444444455555555555555444321 23444444555555555555555555554444333 3444444555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 038109 220 RAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 220 ~~g~~~~a~~~~~~m~~ 236 (324)
+.|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=3.2e-07 Score=68.41 Aligned_cols=121 Identities=10% Similarity=0.041 Sum_probs=59.8
Q ss_pred hhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCcH--H
Q 038109 80 ENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV-LTRGKRM--E 155 (324)
Q Consensus 80 ~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~~~~--~ 155 (324)
+...|++++|...++...+..| +...|..+...|...|++++|...|++..+... .+...+..+... +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 4555666666666665544444 344566666666666666666666666554321 133444444444 4445554 5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 156 EAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 156 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
+|...++...+... .+...+..+..+|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555555544321 13444444555555555555555555555443
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=1.1e-06 Score=72.98 Aligned_cols=130 Identities=12% Similarity=-0.097 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038109 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD--------------ARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238 (324)
Q Consensus 173 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 238 (324)
...+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34555556666666666666666666555433311 4566666666777777777777776666542
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHH-HHHHHHH
Q 038109 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEA-NFILKEM 304 (324)
Q Consensus 239 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 304 (324)
+.+...+..+..++...|++++|...|+...+... -+...+..+..++.+.|+.++| ..++++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12455666666667777777777777766665432 2455666666666666766666 3344444
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=2.4e-07 Score=67.03 Aligned_cols=99 Identities=15% Similarity=0.002 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 038109 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251 (324)
Q Consensus 172 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 251 (324)
+...+..+...+...|++++|...|+......+. +...|..+..+|...|++++|...|++...... .+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 4456666777788888888888888887776554 677788888888888888888888888776432 24566666777
Q ss_pred HHHhcCCHHHHHHHHHHhCCC
Q 038109 252 ALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~ 272 (324)
++...|++++|...++...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888777654
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.57 E-value=5.4e-07 Score=67.14 Aligned_cols=123 Identities=10% Similarity=0.086 Sum_probs=92.3
Q ss_pred HHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--
Q 038109 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG-ACRAGRV-- 224 (324)
Q Consensus 148 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~-- 224 (324)
+...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 356688888888888877654 346778888888899999999999999988876544 67777778887 7788888
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC
Q 038109 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 225 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (324)
++|...+++..+... -+...+..+...+...|++++|...++...+..
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999988876532 345667778888889999999999888877653
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.56 E-value=5.9e-06 Score=56.36 Aligned_cols=97 Identities=12% Similarity=-0.010 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 253 (324)
..+..+...+...|++++|...|++....... +...+..+...+...|++++|...+++..+... .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 33444455555555555555555555444322 444555555555555555555555555544321 2334444455555
Q ss_pred HhcCCHHHHHHHHHHhCCC
Q 038109 254 LRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~ 272 (324)
...|++++|...++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555443
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=1.4e-07 Score=71.82 Aligned_cols=118 Identities=13% Similarity=0.017 Sum_probs=57.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC--------------hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCC
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFG-LS--------------AITFHPILSVLTRGKRMEEAWGLMEVMKEIRV 169 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 169 (324)
.+..+...+...|++++|+..|++..+.... |+ ...+..+..++.+.|++++|...++...+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 5666777778888888888888887764211 11 1334444444444444444444444444332
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 038109 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224 (324)
Q Consensus 170 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 224 (324)
+.+...+..+..+|...|++++|...|++..+.... +...+..+..++...++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHH
Confidence 123344444444444444444444444444433222 333344444333333333
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=1.1e-06 Score=63.46 Aligned_cols=95 Identities=11% Similarity=-0.054 Sum_probs=51.7
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038109 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC 219 (324)
Q Consensus 140 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 219 (324)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|++.....+. +...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 34444445555555555555555555432 124455555555556666666666666655554333 4455555556666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 038109 220 RAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 220 ~~g~~~~a~~~~~~m~~ 236 (324)
..|++++|.+.|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666655543
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=7.8e-06 Score=55.72 Aligned_cols=89 Identities=15% Similarity=0.022 Sum_probs=36.4
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 038109 145 LSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRV 224 (324)
Q Consensus 145 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 224 (324)
...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.... +...+..+..++...|++
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 88 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhH
Confidence 333334444444444444433321 113333444444444444444444444444433222 334444444444444444
Q ss_pred HHHHHHHHHHH
Q 038109 225 EEAFVLLRRMV 235 (324)
Q Consensus 225 ~~a~~~~~~m~ 235 (324)
++|.+.+++..
T Consensus 89 ~~A~~~~~~~~ 99 (118)
T 1elw_A 89 EEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 150
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.50 E-value=0.00047 Score=60.14 Aligned_cols=121 Identities=9% Similarity=-0.002 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038109 177 NYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGAC-RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255 (324)
Q Consensus 177 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 255 (324)
...+....+.++.+.|..+|+.. .. ...+...|......-. ..++.+.|..+|+...+.- .-+...+...++-..+
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 33334444556677788888777 22 1224444432222211 2235788888888776542 1123334455666667
Q ss_pred cCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 256 LGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
.|+.+.|..+|+.+.+ ....|...+..-.+.|+.+.+.+++++..
T Consensus 367 ~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 367 IGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7888888888877632 45667777766666788888888777765
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=4.1e-05 Score=65.49 Aligned_cols=194 Identities=9% Similarity=0.027 Sum_probs=136.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCC-c---------------hhhHhhhhchhhhhhHHHHHHHHHHHhc---CCCCH
Q 038109 43 NAAGHERDLETVRYLLNKRARDCCFNT-A---------------NTFNFITNTENSLSVLSDLCRTLARLDK---GFPRK 103 (324)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~~-~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~ 103 (324)
..+.+.|++++|.+.|....+..-... . ..+..+...|...|++++|.+.+..+.+ ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 446678999999999998876422111 1 1256778889999999999999887743 22322
Q ss_pred H----HHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-hhhHHHHHHHHHccCcHHHHHHHHHHHHhC--CC--C
Q 038109 104 S----AYDTLIGRLCKLKKIDEALRVVDIMAE----GGFGLS-AITFHPILSVLTRGKRMEEAWGLMEVMKEI--RV--S 170 (324)
Q Consensus 104 ~----~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~--~ 170 (324)
. +.+.+-..+...|+.+.|..++++... .+..+. ..++..+...+...|++++|..++++.... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 344445555667899999999887754 232222 456778888999999999999999886542 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC---CCCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 171 P-DLTAYNYLLTAYCFKGNLTATSGVLKKMEEE---KLGA-D--ARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 171 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~-~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
+ ...++..++..|...|++++|...+++.... ...| . ...+..+...+...|++++|...|.+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2567888899999999999999999876542 1112 1 34566677778888999999888877653
No 152
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.6e-05 Score=68.15 Aligned_cols=192 Identities=8% Similarity=-0.130 Sum_probs=94.9
Q ss_pred hchhhhhhHHHHHHHHHHHhcCCCCH------------------HHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCh
Q 038109 78 NTENSLSVLSDLCRTLARLDKGFPRK------------------SAYDTLIGRLCKLKKIDEALRVVDIMAEGG-FGLSA 138 (324)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~~~~~~p~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~ 138 (324)
..+.+.|++++|.+.+..+.+..|+. .++..+...|...|++++|.+.+.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 44556667777777776664433211 135556666666666666666666654311 11111
Q ss_pred ----hhHHHHHHHHHccCcHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC--CC--C
Q 038109 139 ----ITFHPILSVLTRGKRMEEAWGLMEVMKE----IRVSP-DLTAYNYLLTAYCFKGNLTATSGVLKKMEEE--KL--G 205 (324)
Q Consensus 139 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~--~ 205 (324)
.+.+.+-..+...|+.+++..+++.... .+..+ -..++..+...|...|++++|..++++.... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1122222233344566666666655432 12111 1345555666666666666666666655431 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 206 A-DARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQSVL--YSTYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 206 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
+ ....+..++..|...|++++|..++++.... +..|. ...+..+...+...|+++.|...+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 1345555666666666666666666554422 11111 223344444455556666666555444
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=5e-06 Score=57.96 Aligned_cols=92 Identities=12% Similarity=-0.053 Sum_probs=43.2
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038109 142 HPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA 221 (324)
Q Consensus 142 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 221 (324)
......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+..+. +...|..+..++...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 333344444444444444444444432 123444444555555555555555555554444332 344444555555555
Q ss_pred CCHHHHHHHHHHHH
Q 038109 222 GRVEEAFVLLRRMV 235 (324)
Q Consensus 222 g~~~~a~~~~~~m~ 235 (324)
|++++|.+.|++..
T Consensus 86 ~~~~~A~~~~~~al 99 (126)
T 3upv_A 86 KEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHH
Confidence 55555555555444
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=4.1e-06 Score=58.68 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcC----HHHHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG--QSVL----YSTYAH 248 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~~ 248 (324)
.+..+...+.+.|++++|...|++..+..+. +...|+.+..+|.+.|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3445555666666666666666665554433 45556666666666666666666666554321 0011 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCC
Q 038109 249 VMGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~ 271 (324)
+-.++...|++++|...++....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555554443
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.46 E-value=0.0002 Score=58.61 Aligned_cols=187 Identities=10% Similarity=0.001 Sum_probs=117.1
Q ss_pred cCCCHH-HHHHHHHHHHhcCCCCCchhhHhhhhchhhhhh----------HHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q 038109 47 HERDLE-TVRYLLNKRARDCCFNTANTFNFITNTENSLSV----------LSDLCRTLARLDKGFP-RKSAYDTLIGRLC 114 (324)
Q Consensus 47 ~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p-~~~~~~~li~~~~ 114 (324)
+.|.++ +|+++++.++..+ +-+...|+.--.++...+. ++++..+++.+....| +..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 455554 7888888887743 2333455554444444433 5677777777766666 5557766555555
Q ss_pred ccC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCc-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 038109 115 KLK--KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR-MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK----- 186 (324)
Q Consensus 115 ~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----- 186 (324)
+.+ ++++++.+++++.+.... |..+|+--...+...|. ++++++.++.+.+..+. |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccc
Confidence 556 478888888888876443 66666666566666676 57788888887776543 666666665555544
Q ss_pred ---------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHC
Q 038109 187 ---------GNLTATSGVLKKMEEEKLGADARTYDALVLGACRA-----------GRVEEAFVLLRRMVDD 237 (324)
Q Consensus 187 ---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~ 237 (324)
+.++++++.++......+. |...|+-+-..+.+. +.++++++.++++.+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777777766555 677776554444443 3355666666666643
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=4.4e-06 Score=58.26 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 038109 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGA 252 (324)
Q Consensus 173 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 252 (324)
...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...+++..+... .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 345566667777777777777777777766443 667777777777777777777777777765431 235566666677
Q ss_pred HHhcCCHHHHHHHHHHhCCC
Q 038109 253 LLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~ 272 (324)
+...|++++|...++...+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777666554
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=3.5e-06 Score=63.98 Aligned_cols=131 Identities=8% Similarity=-0.015 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD---------------ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 239 (324)
.+..+...+...|++++|...|++..+....-. ...|..+..+|.+.|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344445555555566666655555554322100 2556666666677777777777777666542
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHH-HHHHHHHhC
Q 038109 240 SVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN-FILKEMNKR 307 (324)
Q Consensus 240 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 307 (324)
+.+...+..+..++...|++++|...++...+... -+...+..+..++...++.+++. ..+..|...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23455566666667777777777777766655432 24555666666666666665555 444444433
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.44 E-value=3e-06 Score=57.29 Aligned_cols=57 Identities=7% Similarity=-0.084 Sum_probs=21.9
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038109 143 PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200 (324)
Q Consensus 143 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 200 (324)
.+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333444444444444444433322 1123333333334444444444444444333
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.43 E-value=4.2e-06 Score=56.57 Aligned_cols=94 Identities=10% Similarity=-0.067 Sum_probs=40.6
Q ss_pred hhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHH
Q 038109 72 TFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILSVL 148 (324)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~ 148 (324)
.+..+...+...|++++|...+++..+..| +..+|..+...+...|++++|.+.+++..+.. +. +...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 333444444444444444444444433332 23344444444444444444444444444431 11 233444444444
Q ss_pred Hcc-CcHHHHHHHHHHHHh
Q 038109 149 TRG-KRMEEAWGLMEVMKE 166 (324)
Q Consensus 149 ~~~-~~~~~a~~~~~~m~~ 166 (324)
.+. |++++|.+.++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 444 444444444444443
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.43 E-value=1e-05 Score=59.32 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038109 139 ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGA 218 (324)
Q Consensus 139 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 218 (324)
..+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.... +...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444455555555555555555554432 124455555555666666666666666655554333 455556666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 038109 219 CRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 219 ~~~g~~~~a~~~~~~m~~ 236 (324)
...|++++|.+.|++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 666666666666665554
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.42 E-value=1e-05 Score=57.15 Aligned_cols=96 Identities=14% Similarity=-0.046 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038109 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG 217 (324)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 217 (324)
...+..+...+...|++++|...|+...+... .+...+..+..++...|++++|...+++..+.... +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 33444444444444555555555544444321 23444444555555555555555555554444322 34445555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 038109 218 ACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 218 ~~~~g~~~~a~~~~~~m~ 235 (324)
+...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555444
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=5.4e-06 Score=57.78 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHHHH
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ--SVL----YSTYAHV 249 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~l 249 (324)
+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++...... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 344444444555555555555544443222 344444445555555555555555554443210 011 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHhCC
Q 038109 250 MGALLRLGYYAQAVKFVMVCGG 271 (324)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~ 271 (324)
...+...|++++|...++...+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555555555544444
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=4.5e-06 Score=59.66 Aligned_cols=94 Identities=15% Similarity=-0.055 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 255 (324)
+..+...+.+.|++++|...|+......+. +...|..+..+|.+.|++++|...|++...... .+...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 333444455555555555555555544332 444555555555555555555555555544321 223344444455555
Q ss_pred cCCHHHHHHHHHHhCC
Q 038109 256 LGYYAQAVKFVMVCGG 271 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~ 271 (324)
.|++++|...++...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554443
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=6.6e-06 Score=58.80 Aligned_cols=90 Identities=8% Similarity=-0.102 Sum_probs=43.5
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038109 144 ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223 (324)
Q Consensus 144 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 223 (324)
+...+.+.|++++|...|+....... .+...|..+..+|...|++++|...|++.....+. +...+..+..+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 33444444555555555554444321 23444444555555555555555555555444332 34444445555555555
Q ss_pred HHHHHHHHHHHH
Q 038109 224 VEEAFVLLRRMV 235 (324)
Q Consensus 224 ~~~a~~~~~~m~ 235 (324)
+++|.+.|+...
T Consensus 102 ~~~A~~~~~~al 113 (142)
T 2xcb_A 102 LDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=3.3e-05 Score=55.07 Aligned_cols=98 Identities=13% Similarity=-0.058 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 038109 102 RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS----AITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177 (324)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 177 (324)
+...+..+...+...|++++|.+.|++..+.. |+ ...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34455566666666666666666666665532 33 3445555555555556666655555555432 12344555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555544
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.5e-05 Score=55.74 Aligned_cols=93 Identities=13% Similarity=0.030 Sum_probs=39.2
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 038109 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD----LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215 (324)
Q Consensus 140 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 215 (324)
.+..+...+...|++++|...|++..+.. |+ ...+..+..+|...|++++|...+++..+.... +...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHH
Confidence 33444444444444444444444444322 22 333444444444444444444444444333221 333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 038109 216 LGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~m~ 235 (324)
.++...|++++|...|++..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444443
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=2.4e-05 Score=55.14 Aligned_cols=100 Identities=11% Similarity=0.006 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 038109 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVM 250 (324)
Q Consensus 171 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 250 (324)
.+...+..+...+...|++++|...|+........ +...|..+..++...|++++|...+++..+... .+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 45677778888888888888888888887776544 677888888888888888888888888776532 3456677777
Q ss_pred HHHHhcCCHHHHHHHHHHhCCC
Q 038109 251 GALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
.++...|++++|...+....+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7888888888888888776553
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=6.7e-06 Score=57.25 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=48.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC--CC----HHHHHHH
Q 038109 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG--AD----ARTYDAL 214 (324)
Q Consensus 141 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~~~~l 214 (324)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.... ++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444445555555555555544432 123444555555555555555555555554443211 11 4455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 038109 215 VLGACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 215 i~~~~~~g~~~~a~~~~~~m~~~ 237 (324)
..++...|++++|.+.|++..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 56666666666666666665543
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1.2e-05 Score=56.28 Aligned_cols=59 Identities=17% Similarity=0.033 Sum_probs=28.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 165 (324)
+..+...+.+.|++++|++.|++..+... -+...|..+..+|.+.|++++|...+++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444555555555555555555544321 133444444444555555555555444443
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.34 E-value=4.8e-06 Score=60.39 Aligned_cols=131 Identities=14% Similarity=0.036 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLG-AD----ARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQSV-LYS 244 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 244 (324)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++.... +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555544322100 01 124455555555566666666555554322 1111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCCC----CC-CcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 245 TYAHVMGALLRLGYYAQAVKFVMVCGGR----DI-KLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
++..+...+...|++++|...++...+. +. ......+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444555566666666666655544321 10 1123445566666677777777777776654
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=1.4e-05 Score=58.61 Aligned_cols=100 Identities=7% Similarity=-0.091 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 038109 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMG 251 (324)
Q Consensus 172 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 251 (324)
+...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|+..|++..+... -+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4667888889999999999999999999887654 788999999999999999999999999887542 34778888899
Q ss_pred HHHhcCCHHHHHHHHHHhCCCC
Q 038109 252 ALLRLGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~ 273 (324)
++...|++++|...++...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999998887754
No 172
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.31 E-value=0.00023 Score=62.12 Aligned_cols=68 Identities=3% Similarity=-0.059 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-CC-CCCchhhHhhhhchh----hhhhHHHHHHHHHHHhcC
Q 038109 32 EPTSAYYDDLVNAAGHERD-LETVRYLLNKRARD-CC-FNTANTFNFITNTEN----SLSVLSDLCRTLARLDKG 99 (324)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~ 99 (324)
.|++..|...+....+.++ .+....+|+..... |. +.+...|...+..+. ..++++.+.++|++....
T Consensus 44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 3788888888887777663 45567777777654 32 335567777666543 457888888888888664
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=2e-06 Score=74.93 Aligned_cols=125 Identities=8% Similarity=-0.114 Sum_probs=96.5
Q ss_pred hhhHhhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038109 71 NTFNFITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLT 149 (324)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 149 (324)
..+..+...+.+.|++++|.+.+++..+..| +..+|..+..+|.+.|++++|++.+++..+... -+..++..+..++.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 85 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 4456677788889999999999998877666 467899999999999999999999999988643 36778888899999
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhhHHHHHH
Q 038109 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA--YCFKGNLTATSGVLK 197 (324)
Q Consensus 150 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 197 (324)
+.|++++|...+++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999887542 133445455445 788899999999988
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=1.6e-05 Score=69.23 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=39.5
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229 (324)
Q Consensus 150 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 229 (324)
+.|++++|...+++..+.. +.+..++..+..+|.+.|++++|...+++..+.... +...|..+..+|.+.|++++|.+
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444444444432 113444444444555555555555555544444322 34444444555555555555555
Q ss_pred HHHHHHH
Q 038109 230 LLRRMVD 236 (324)
Q Consensus 230 ~~~~m~~ 236 (324)
.|++..+
T Consensus 96 ~~~~al~ 102 (477)
T 1wao_1 96 DYETVVK 102 (477)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=9.9e-06 Score=58.64 Aligned_cols=95 Identities=22% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEK----LGA-DARTYDALVLGACRAGRVEEAFVLLRRMVDD----GQSV-LYS 244 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 244 (324)
++..+...+...|++++|...+++..+.. ..+ ....+..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444445555555555555554433210 000 1234445555555666666666655554422 1111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 245 TYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
++..+...+...|++++|...+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4555555666666666666666544
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.27 E-value=3.1e-06 Score=58.26 Aligned_cols=85 Identities=14% Similarity=0.015 Sum_probs=43.9
Q ss_pred cCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038109 151 GKRMEEAWGLMEVMKEIR--VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAF 228 (324)
Q Consensus 151 ~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 228 (324)
.|++++|...|++..+.+ -+.+...+..+..+|...|++++|...|++..+..+. +...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555542 1123344555555555666666666666655554433 4555555555566666666666
Q ss_pred HHHHHHHH
Q 038109 229 VLLRRMVD 236 (324)
Q Consensus 229 ~~~~~m~~ 236 (324)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=0.0011 Score=54.18 Aligned_cols=221 Identities=9% Similarity=-0.029 Sum_probs=153.4
Q ss_pred hhhH-HHHHHHHHHHhcCCCC-HHHHHH---HHHHHHccC-------CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 038109 83 LSVL-SDLCRTLARLDKGFPR-KSAYDT---LIGRLCKLK-------KIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150 (324)
Q Consensus 83 ~~~~-~~a~~~~~~~~~~~p~-~~~~~~---li~~~~~~~-------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 150 (324)
.|.+ ++|..+.+.+....|+ ..+|+. ++....+.. .+++++.+++.+...... +..+|+.-...+.+
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~ 120 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 120 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhc
Confidence 3444 4788999999888885 446664 333333221 268899999999886443 67777776666777
Q ss_pred cC--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 038109 151 GK--RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGN-LTATSGVLKKMEEEKLGADARTYDALVLGACRA------ 221 (324)
Q Consensus 151 ~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~------ 221 (324)
.+ .+++++.+++.+.+... -|-..|+.-.......|. ++++++.++.+.+..+. |...|+.....+.+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC--
T ss_pred cCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc
Confidence 77 48999999999998764 378888888888888888 58999999999998777 889998877776655
Q ss_pred --------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhCCCCCCcCH-hHH
Q 038109 222 --------GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL-----------GYYAQAVKFVMVCGGRDIKLDT-ELF 281 (324)
Q Consensus 222 --------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~-~~~ 281 (324)
+.++++++.++...... +-|...|+-+-..+.+. +.++++++.++++.+.. ||. ..+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~~w~l 275 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PENKWCL 275 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--cccchHH
Confidence 45788899888887643 23444554333333333 35778888888888753 442 332
Q ss_pred HHHH---HHHhCcCCHHHHHHHHHHHHhCCC
Q 038109 282 GSLG---SKLIGLERFNEANFILKEMNKRDL 309 (324)
Q Consensus 282 ~~l~---~~~~~~g~~~~a~~~~~~m~~~~~ 309 (324)
-.++ ......|..+++...+.++++-+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 2222 222356788889999998875443
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.24 E-value=2.1e-05 Score=68.05 Aligned_cols=122 Identities=9% Similarity=-0.111 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD--------------ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQS 240 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 240 (324)
.+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS- 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Confidence 344444555555555555555555444322111 34555555555555555555555555554321
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHH
Q 038109 241 VLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298 (324)
Q Consensus 241 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 298 (324)
.+...|..+..+|...|++++|...|+...+.... +...+..+..++.+.|+.+++.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 23444555555555555555555555555554321 3444555555555555555443
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.24 E-value=1.6e-05 Score=55.08 Aligned_cols=88 Identities=14% Similarity=0.001 Sum_probs=38.7
Q ss_pred HHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 038109 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVE 225 (324)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 225 (324)
..+.+.|++++|...+++..+... .+...+..+..++...|++++|...|++..+..+. +...+..+..++.+.|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 334444444444444444444321 13344444444444444444444444444443322 3344444444444444444
Q ss_pred HHHHHHHHHH
Q 038109 226 EAFVLLRRMV 235 (324)
Q Consensus 226 ~a~~~~~~m~ 235 (324)
+|...+++..
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=2.1e-05 Score=54.49 Aligned_cols=95 Identities=8% Similarity=-0.121 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLR 255 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 255 (324)
+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..|++..+... -+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 344555666777777777777777765444 666777777777777777777777777665431 234556666667777
Q ss_pred cCCHHHHHHHHHHhCCC
Q 038109 256 LGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 256 ~g~~~~a~~~~~~~~~~ 272 (324)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766554
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.19 E-value=0.0001 Score=51.24 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=41.3
Q ss_pred HHHHccCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 038109 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDL---TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD---ARTYDALVLGAC 219 (324)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~ 219 (324)
..+...|++++|...|+...+.... +. ..+..+..++...|++++|...|++..+..+. + ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHH
Confidence 3444445555555555554443211 11 23444444555555555555555555443222 1 334444455555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 038109 220 RAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 220 ~~g~~~~a~~~~~~m~~ 236 (324)
+.|++++|...|+...+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=3.5e-05 Score=66.71 Aligned_cols=138 Identities=9% Similarity=-0.121 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038109 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182 (324)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 182 (324)
...|..+...+.+.|++++|+..|++..+.. |+...+ . .+... +... .....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~----~~~~----~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK----ASES----FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH----HHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH----HHHH----HHHHHHHHHHHH
Confidence 3467888889999999999999999888632 221000 0 00000 0000 012344555555
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 038109 183 YCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262 (324)
Q Consensus 183 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 262 (324)
|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+... -+...+..+..++.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554333 455555555555555555555555555553311 1233444444555555555544
Q ss_pred H
Q 038109 263 V 263 (324)
Q Consensus 263 ~ 263 (324)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=0.00015 Score=50.33 Aligned_cols=94 Identities=11% Similarity=-0.077 Sum_probs=60.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 038109 108 TLIGRLCKLKKIDEALRVVDIMAEGGFGLSA---ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPD---LTAYNYLLT 181 (324)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~ 181 (324)
.+...+...|++++|...|++..+.... +. ..+..+..++.+.|++++|...++...+.... + ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 3445666677777777777777664221 22 35566666777777777777777776664321 2 455666677
Q ss_pred HHHhcCChhhHHHHHHHHHHCC
Q 038109 182 AYCFKGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 182 ~~~~~~~~~~a~~~~~~m~~~~ 203 (324)
++...|++++|...|+...+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 7777777777777777776653
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.11 E-value=4.1e-05 Score=64.23 Aligned_cols=138 Identities=7% Similarity=-0.052 Sum_probs=80.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
.|..+...+.+.|++++|++.|++..+.- +.. ..... .+...+. -+.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~-~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKL-QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHH-HHHHHHHHHHHHHHHH
Confidence 46777888888899999988888877520 000 00000 0111111 0113455666666677
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVK 264 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 264 (324)
+.|++++|...+++..+.... +...|..+..+|...|++++|.+.|++..+... -+...+..+...+...++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766665433 566666667777777777777777776665421 234455555555666666655543
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=3.7e-05 Score=64.53 Aligned_cols=123 Identities=7% Similarity=-0.096 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH----------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEE----------------EKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 237 (324)
..+..+...+.+.|++++|...|++..+ ... .+...|..+..+|.+.|++++|.+.+++..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 3466777888889999999998887775 211 14678888999999999999999999998865
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHH
Q 038109 238 GQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299 (324)
Q Consensus 238 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 299 (324)
. +-+...+..+..+|...|++++|...++...+... -+...+..+...+.+.++.+++.+
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 23567788888899999999999999998877643 266777777777777777777654
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=8.1e-06 Score=56.15 Aligned_cols=86 Identities=12% Similarity=-0.013 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 038109 116 LKKIDEALRVVDIMAEGGF--GLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATS 193 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 193 (324)
.|++++|+..|++..+.+. +-+...+..+...+...|++++|...+++..+... -+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 3455555555555555321 11234455555555555555555555555555432 23445555555555666666666
Q ss_pred HHHHHHHHC
Q 038109 194 GVLKKMEEE 202 (324)
Q Consensus 194 ~~~~~m~~~ 202 (324)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 655555443
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=0.00015 Score=52.80 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038109 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 173 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 237 (324)
...|..+..+|.+.|++++|...++...+..+. +...|..+..+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 456667777777777777777777777766443 5677777777777777777777777776654
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=8.7e-05 Score=54.11 Aligned_cols=99 Identities=8% Similarity=-0.048 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHC--------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEE--------KL---------GADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 173 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
...+......+.+.|++++|...|.+.... .. +.+...|..+..+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677778888888888888888877654 10 1124567777778888888888888888777
Q ss_pred HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 236 DDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 236 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
+.. +.+...|..+..++...|++++|...++.....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 643 234566777777788888888888888777665
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.97 E-value=4.6e-05 Score=63.13 Aligned_cols=96 Identities=11% Similarity=-0.043 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHH-H
Q 038109 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSK-L 288 (324)
Q Consensus 210 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 288 (324)
.|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|+...+.... +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 67788888899999999999998887653 235677888888899999999999999988876432 44555555544 2
Q ss_pred hCcCCHHHHHHHHHHHHhC
Q 038109 289 IGLERFNEANFILKEMNKR 307 (324)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (324)
...+..+++..+|.+|...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 3456677788888887643
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.97 E-value=6.6e-05 Score=65.20 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=92.5
Q ss_pred HHHhcCChhhHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-Cc-CHHHHH
Q 038109 182 AYCFKGNLTATSGVLKKMEEE---KLGA----DARTYDALVLGACRAGRVEEAFVLLRRMVDD-----GQ-SV-LYSTYA 247 (324)
Q Consensus 182 ~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p-~~~~~~ 247 (324)
.+...|++++|..++++..+. -..| ...+++.|..+|...|++++|..++++...- |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999876642 1222 2467899999999999999999999886542 21 23 356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhCC-----CC--CCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 248 HVMGALLRLGYYAQAVKFVMVCGG-----RD--IKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
.|...|..+|++++|+.++++..+ .| .+....+.+.+-.++...|.+++|..++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988866543 22 222344556667788888999999999999875
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.94 E-value=0.00061 Score=60.51 Aligned_cols=173 Identities=12% Similarity=0.039 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCc----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038109 117 KKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR----------MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK 186 (324)
Q Consensus 117 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 186 (324)
...++|++.++++.+.... +..+|+.--..+.+.|+ ++++...++.+.+...+ +..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3446677777777764332 34455544444444444 77777778777775533 666777777777777
Q ss_pred C--ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-------
Q 038109 187 G--NLTATSGVLKKMEEEKLGADARTYDALVLGACRAG-RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL------- 256 (324)
Q Consensus 187 ~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------- 256 (324)
+ +++++.+.++++.+.... +...|+.-..++.+.| .++++++.++++.+... -+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccc
Confidence 7 568888888888877665 7777777777777777 77778877777765432 3455566555555542
Q ss_pred -------CCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCH
Q 038109 257 -------GYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF 294 (324)
Q Consensus 257 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 294 (324)
+.++++.+.++......+. |...|.-+-..+.+.++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 4567777777777665433 666776666666666653
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=0.0008 Score=59.75 Aligned_cols=174 Identities=11% Similarity=-0.014 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhh----------HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccC
Q 038109 49 RDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV----------LSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLK 117 (324)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~ 117 (324)
..-++|++.++.+...+ +-+...|+.--.++...++ ++++.+.++.+.+..| +..+|+.-.-.+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 34567899999998853 3444677777777777777 8999999999987777 5668888777788888
Q ss_pred --CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------
Q 038109 118 --KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGK-RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFK-------- 186 (324)
Q Consensus 118 --~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-------- 186 (324)
+++++++.++++.+.... +..+|+--...+.+.| ..+++.+.++++.+..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 779999999999987554 7777887777777888 889999999998887643 778888777776663
Q ss_pred ------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038109 187 ------GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEE 226 (324)
Q Consensus 187 ------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 226 (324)
+.++++.+.+++.....+. |...|+-+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578889999888877665 78889888888877776443
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.92 E-value=0.00025 Score=50.27 Aligned_cols=111 Identities=12% Similarity=0.020 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHH
Q 038109 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF----KGNLTATS 193 (324)
Q Consensus 118 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 193 (324)
++++|++.|++..+.|.+ +.. +-..|...+..++|.+.|++..+.| +...+..+-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 455666666666665521 222 4444445555566666666665553 44555555555555 55666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 038109 194 GVLKKMEEEKLGADARTYDALVLGACR----AGRVEEAFVLLRRMVDDGQ 239 (324)
Q Consensus 194 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 239 (324)
+.|++..+.| +...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 6666665552 44555555555655 5666666666666655543
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=2.3e-05 Score=65.00 Aligned_cols=129 Identities=14% Similarity=0.049 Sum_probs=71.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh------------------hhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA------------------ITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
.+..+...+.+.|++++|+..|++..+.. |+. ..|..+..++.+.|++++|...+++..+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46666677777777777777777766531 222 2677788888888999999998888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 038109 167 IRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG-ACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 167 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~ 237 (324)
.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+++...|+.|...
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 54 236778888888899999999999998887765433 44555555544 33456677788888887643
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.91 E-value=0.00022 Score=51.38 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC-------CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEE-------KLGADARTY----DALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
.|+.+..++.+.|++++|+..+++..+. .+. +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6667777777777777777777766654 332 34566 6777777777777777777777653
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=5.3e-05 Score=65.78 Aligned_cols=97 Identities=11% Similarity=-0.013 Sum_probs=57.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-CCC-hhhHHHHHHHHHccCcHHHHHHHHHHHHh-----CCC-CC
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAE-----GGF-GLS-AITFHPILSVLTRGKRMEEAWGLMEVMKE-----IRV-SP 171 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~~ 171 (324)
+++.|...|...|++++|+.++++..+ .|. .|+ ..+++.|...|...|++++|+.++++..+ .|. .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 566666666666776666666666543 111 122 34566666666677777777666665442 231 12
Q ss_pred -CHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 038109 172 -DLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201 (324)
Q Consensus 172 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 201 (324)
...+.+.+-.++...+.+++|..+|..+++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445566666677777777777777665
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.86 E-value=0.0011 Score=46.79 Aligned_cols=111 Identities=9% Similarity=-0.133 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCcHHHH
Q 038109 83 LSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR----GKRMEEA 157 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a 157 (324)
.+++++|.+.|++..+. .|+.. +...|...+.+++|.+.|++..+.| +...+..+-..|.. .++.++|
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 44555555555555332 22222 4445555555566666666665553 34445555555554 5566666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHCC
Q 038109 158 WGLMEVMKEIRVSPDLTAYNYLLTAYCF----KGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 158 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 203 (324)
...|++..+.| +...+..+-..|.. .+++++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666554 34455556666665 566666666666666554
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.83 E-value=0.00024 Score=51.22 Aligned_cols=61 Identities=23% Similarity=0.123 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCCC-----CCCc-CHhHH----HHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 245 TYAHVMGALLRLGYYAQAVKFVMVCGGR-----DIKL-DTELF----GSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
.|..+-.++.+.|++++|+..++...+. .+.| +...| .....++...|++++|+..|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444455555555555555555444432 0122 34455 667777777777777777777664
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=3e-05 Score=52.29 Aligned_cols=63 Identities=6% Similarity=0.067 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 173 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
...+..+...+...|++++|...|++..+.... +...|..+..++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344455555555556666666655555554332 455555555555566666666665555553
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.73 E-value=0.00026 Score=48.12 Aligned_cols=78 Identities=12% Similarity=-0.056 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 157 AWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 157 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
|...+++..+.. +.+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455444432 124455555555666666666666666655554332 455555556666666666666666655543
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.72 E-value=0.00022 Score=48.51 Aligned_cols=81 Identities=15% Similarity=-0.012 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038109 190 TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVC 269 (324)
Q Consensus 190 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (324)
+.|...|++..+.... +...+..+...|...|++++|...|++..+... .+...+..+..++...|++++|...++..
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677788888776554 788888899999999999999999999886532 34667778888899999999999998877
Q ss_pred CCC
Q 038109 270 GGR 272 (324)
Q Consensus 270 ~~~ 272 (324)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.63 E-value=0.0012 Score=42.26 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
..+..+...+...|++++|...|++..+.... +...+..+..++.+.|++++|.+.+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444445555555555555555555443322 344455555555555555555555555443
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00034 Score=46.89 Aligned_cols=62 Identities=11% Similarity=0.007 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHh
Q 038109 104 SAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 166 (324)
..|..+...+...|++++|++.|++..+... .+...+..+..++.+.|++++|...+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444455555555555555555555544321 1344444444555555555555555555444
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.61 E-value=0.00044 Score=45.76 Aligned_cols=63 Identities=16% Similarity=0.048 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 172 DLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 172 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
+...+..+..+|...|++++|...|++..+..+. +...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455556666666666666666666666655433 45556666666666666666666666554
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.59 E-value=0.001 Score=42.66 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=27.1
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 141 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3333344444444444444444443332 113344444444555555555555555544443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.47 E-value=0.00026 Score=50.93 Aligned_cols=97 Identities=10% Similarity=-0.024 Sum_probs=59.5
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhH----------HHHHHHHHHHhcCCCC-HHHHHHHHHHHHc
Q 038109 47 HERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVL----------SDLCRTLARLDKGFPR-KSAYDTLIGRLCK 115 (324)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~p~-~~~~~~li~~~~~ 115 (324)
+.+.+++|.+.++...+.. +.++..|..+..++...+++ ++|+..|++..+..|+ ..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4445677777777776653 44556666666666666554 4777777776666663 4467777777766
Q ss_pred cC-----------CHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038109 116 LK-----------KIDEALRVVDIMAEGGFGLSAITFHPILS 146 (324)
Q Consensus 116 ~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 146 (324)
.| ++++|++.|++..+ +.|+...|...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 53 66666666666665 3345444444333
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=0.0005 Score=49.44 Aligned_cols=100 Identities=15% Similarity=0.068 Sum_probs=70.1
Q ss_pred chhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCH----------HHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038109 79 TENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKI----------DEALRVVDIMAEGGFGLSAITFHPILSV 147 (324)
Q Consensus 79 ~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~g~~~~~~~~~~li~~ 147 (324)
-..+.+.+++|.+.++...+..| +...|..+..++...+++ ++|+..|++..+.... +..+|..+-.+
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34677889999999999877777 567888888888877764 5788888887775332 45677777777
Q ss_pred HHccC-----------cHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038109 148 LTRGK-----------RMEEAWGLMEVMKEIRVSPDLTAYNYLLT 181 (324)
Q Consensus 148 ~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 181 (324)
|...| ++++|...|++..+. .|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 77654 677777777776663 455544444333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.29 E-value=0.0014 Score=43.26 Aligned_cols=62 Identities=15% Similarity=0.030 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 038109 103 KSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 165 (324)
...|..+...|...|++++|+..|++..+.... +...|..+..++...|++++|...+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555566666666666555553221 34455555555555566666655555544
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.19 E-value=0.015 Score=53.89 Aligned_cols=133 Identities=13% Similarity=0.080 Sum_probs=78.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCF 185 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 185 (324)
...++..+.+.|.+++|+++.+.- ..-+......|+++.|.++.+.+ .+...|..+...+.+
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHH
Confidence 366666677777777777654211 11123345567777777765432 356778888888888
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038109 186 KGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 265 (324)
.++++.|.+.|..+.+ |..+...+...|+.+...++-+.....|. ++....+|.+.|++++|.++
T Consensus 694 ~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp TTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHH
Confidence 8888888888877643 33444445556666665555554444432 23334445556666666666
Q ss_pred HHHhCC
Q 038109 266 VMVCGG 271 (324)
Q Consensus 266 ~~~~~~ 271 (324)
+.++.+
T Consensus 759 ~~~~~~ 764 (814)
T 3mkq_A 759 LIKSQR 764 (814)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 655443
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.03 E-value=0.0014 Score=56.02 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=37.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-CCC-hhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAE-----GGF-GLS-AITFHPILSVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 165 (324)
+++.+..+|...|++++|+.++++..+ .|. .|+ ..+++.|...|...|++++|+.++++..
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 566667777777777777776666553 121 122 3456666666777777777776666544
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.01 E-value=0.0033 Score=53.68 Aligned_cols=86 Identities=16% Similarity=0.088 Sum_probs=63.0
Q ss_pred hcCCHHHHHHHHHHHHHC---CCC---c-CHHHHHHHHHHHHhcCCHHHHHHHHHHhCC-------CCCCcCHhHHHHHH
Q 038109 220 RAGRVEEAFVLLRRMVDD---GQS---V-LYSTYAHVMGALLRLGYYAQAVKFVMVCGG-------RDIKLDTELFGSLG 285 (324)
Q Consensus 220 ~~g~~~~a~~~~~~m~~~---~~~---p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~ 285 (324)
..|++++|+.++++..+. -+. | ...+++.|..+|...|++++|+.++++... ...+-...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999988876642 111 2 256788888999999999999888866543 22222356688889
Q ss_pred HHHhCcCCHHHHHHHHHHHH
Q 038109 286 SKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m~ 305 (324)
..|...|++++|..++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999988764
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.98 E-value=0.0051 Score=52.52 Aligned_cols=91 Identities=11% Similarity=0.040 Sum_probs=58.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHhCC-------CCCCcCHhH
Q 038109 215 VLGACRAGRVEEAFVLLRRMVDDG---QSV----LYSTYAHVMGALLRLGYYAQAVKFVMVCGG-------RDIKLDTEL 280 (324)
Q Consensus 215 i~~~~~~g~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~ 280 (324)
+..+.+.|++++|+.++++..... ..| ...+++.+..+|...|++++|+.++++... ...+-...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888877776431 111 245677777778888888887777755432 111223456
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 281 FGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7777778888888888887777653
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.97 E-value=0.013 Score=48.34 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHH
Q 038109 207 DARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELF 281 (324)
Q Consensus 207 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (324)
+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+.+.... .|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 45555555555555566666666666666543 55555555555566666666666666555553 2344444
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.90 E-value=0.0039 Score=53.27 Aligned_cols=85 Identities=8% Similarity=-0.062 Sum_probs=47.0
Q ss_pred hhhhhHHHHHHHHHHHhcC----C-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-CCCC-hhhHHHH
Q 038109 81 NSLSVLSDLCRTLARLDKG----F-PR----KSAYDTLIGRLCKLKKIDEALRVVDIMAE-----GG-FGLS-AITFHPI 144 (324)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~----~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g-~~~~-~~~~~~l 144 (324)
.+.|++++|...+++..+. . |+ ..+++.+...|...|++++|+.++++..+ .| -.|+ ..+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3445566666666555321 1 21 12566666666666777666666666553 11 1122 3456666
Q ss_pred HHHHHccCcHHHHHHHHHHHH
Q 038109 145 LSVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 145 i~~~~~~~~~~~a~~~~~~m~ 165 (324)
...|...|++++|+.++++..
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 666666677776666666544
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.87 E-value=0.043 Score=50.86 Aligned_cols=153 Identities=10% Similarity=0.028 Sum_probs=78.6
Q ss_pred HhcCCCHHHHHH-HHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHH
Q 038109 45 AGHERDLETVRY-LLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEAL 123 (324)
Q Consensus 45 ~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 123 (324)
....++++.|.+ ++.. + ++......++..+.+.|..+.|.++.+ +.. .-.......|+++.|.
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~-------~~~---~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISP-------DQD---QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCC-------CHH---HHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCC-------Ccc---hheehhhhcCCHHHHH
Confidence 345677777766 4311 1 101112455555666666666655432 111 1122345567777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 038109 124 RVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 124 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 203 (324)
++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...|...|+.+...++-+.....|
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 664332 2556677777777777777777777776643 3334444444555555444444444332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038109 204 LGADARTYDALVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 204 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 234 (324)
. ++....+|.+.|++++|.+++.++
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 222333344455555555555443
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.86 E-value=0.039 Score=45.52 Aligned_cols=74 Identities=12% Similarity=-0.097 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 038109 170 SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247 (324)
Q Consensus 170 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 247 (324)
+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++.... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4567777777666666788888888888887765 67777777777778888888888888776654 45656654
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.77 E-value=0.013 Score=38.04 Aligned_cols=55 Identities=9% Similarity=0.116 Sum_probs=28.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGADAR-TYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
..+.+.|++++|...|++..+.... +.. .+..+..+|...|++++|.+.|++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555544332 344 555555555555555555555555544
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.61 E-value=0.091 Score=36.26 Aligned_cols=140 Identities=11% Similarity=0.052 Sum_probs=91.4
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038109 150 RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFV 229 (324)
Q Consensus 150 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 229 (324)
-.|..++..++..+.... .+..-||-+|--....-+-+...++++..-+. .|. ...|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 346666666666666553 24555555555555555555555555544332 121 23344444444
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q 038109 230 LLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309 (324)
Q Consensus 230 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 309 (324)
.+-.+ + .+...+...+..+..+|.-++-.+++..+... -+|++...-.+..+|.+.|+..+|.+++.+.-++|+
T Consensus 83 C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 43322 1 24456777888999999999999999997554 467888888899999999999999999999999888
Q ss_pred ch
Q 038109 310 KM 311 (324)
Q Consensus 310 ~~ 311 (324)
+-
T Consensus 157 kE 158 (172)
T 1wy6_A 157 KE 158 (172)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.50 E-value=0.015 Score=37.72 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=33.3
Q ss_pred HHHHccCcHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 038109 146 SVLTRGKRMEEAWGLMEVMKEIRVSPDLT-AYNYLLTAYCFKGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 203 (324)
..+.+.|++++|...+++..+... .+.. .+..+..+|...|++++|...|++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344555666666666666555431 2344 55666666666666666666666666553
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.15 Score=37.14 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=20.2
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHH
Q 038109 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVM 164 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 164 (324)
..|+++.|.++.+++ -+...|..|.....+.|+++-|++.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444333 13444444444444444444444444433
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.43 E-value=0.089 Score=33.94 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038109 172 DLTAYNYLLTAYCFKGN---LTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDD 237 (324)
Q Consensus 172 ~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 237 (324)
|...+..+..++...++ .++|..++++..+..+. +......+...+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444455555443333 45666666665555444 4555555555566666666666666665543
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.12 Score=37.78 Aligned_cols=102 Identities=8% Similarity=0.067 Sum_probs=59.8
Q ss_pred chhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHH
Q 038109 79 TENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAW 158 (324)
Q Consensus 79 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 158 (324)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.++..
T Consensus 14 LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 345566666666666555 3455677777777777777777777766543 344444455556666655
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 038109 159 GLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKM 199 (324)
Q Consensus 159 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 199 (324)
++-+.....|- ++....++.-.|+++++.++|.+.
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55444444431 333444555667777777766443
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.35 E-value=0.0094 Score=42.37 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHH
Q 038109 189 LTATSGVLKKMEEEKLGADARTYDALVLGACRAG---RVEEAFVLLRRMVDDGQSV--LYSTYAHVMGALLRLGYYAQAV 263 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~ 263 (324)
...+.+-|.+..+.|. ++..+.-.+..++++++ +.+++..+++...+.. .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666776666655 57777777888888887 5668888888887764 24 2344444556678888888888
Q ss_pred HHHHHhCCC
Q 038109 264 KFVMVCGGR 272 (324)
Q Consensus 264 ~~~~~~~~~ 272 (324)
++++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888775
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.16 E-value=0.081 Score=37.56 Aligned_cols=87 Identities=9% Similarity=0.006 Sum_probs=63.0
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG---NLTATSGVLKKMEEEKLGA--DARTYDALVLGACRAGRVEE 226 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~ 226 (324)
.....+.+-|.+..+.|. ++..+...+..++++.+ +.+++..+|++..+.+ .| +...+-.+.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 345667777777766654 67777777888888887 5668888888888764 23 24445556677789999999
Q ss_pred HHHHHHHHHHCCCCcC
Q 038109 227 AFVLLRRMVDDGQSVL 242 (324)
Q Consensus 227 a~~~~~~m~~~~~~p~ 242 (324)
|.+.++.+.+. .|+
T Consensus 90 A~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 90 ALKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHhc--CCC
Confidence 99999888864 464
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.09 E-value=0.08 Score=34.91 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKME 200 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~ 200 (324)
.+..+..++.+.|+++.|...+++..
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.89 E-value=0.12 Score=41.08 Aligned_cols=88 Identities=8% Similarity=-0.028 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-Cc
Q 038109 83 LSVLSDLCRTLARLDKGFPR---KSAYDTLIGRLCK-----LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRG-KR 153 (324)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~p~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~~ 153 (324)
.+....|...+++..+..|+ ...|..+...|.+ .|+.++|.+.|++..+-+..-+..++......+++. |+
T Consensus 176 l~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 176 PDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34455555666665555555 3356666666666 366666666666666633221245555555666553 66
Q ss_pred HHHHHHHHHHHHhCCCC
Q 038109 154 MEEAWGLMEVMKEIRVS 170 (324)
Q Consensus 154 ~~~a~~~~~~m~~~~~~ 170 (324)
.+++.+.+++..+....
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 66666666666665544
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.80 E-value=0.096 Score=33.78 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 154 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
.++|...+++..+... -++.....+...+.+.|++++|...|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455555555444321 13344444444555555555555555555443
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.56 E-value=0.13 Score=33.85 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 173 LTAYNYLLTAYCFKGNLTATSGVLKKMEEEK------LGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 173 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
...+-.+...+.+.++++.|...|+...+.- -.+....+..+..++.+.|++++|...+++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455555666666666666665544320 112345555566666666666666666665554
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.50 E-value=0.21 Score=39.68 Aligned_cols=92 Identities=12% Similarity=0.076 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 038109 154 MEEAWGLMEVMKEIRVSPD---LTAYNYLLTAYCFK-----GNLTATSGVLKKMEEEKLGADARTYDALVLGACRA-GRV 224 (324)
Q Consensus 154 ~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 224 (324)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56777777777774 455 56788888889884 99999999999999875543477888888888884 999
Q ss_pred HHHHHHHHHHHHCCCC--cCHHHHH
Q 038109 225 EEAFVLLRRMVDDGQS--VLYSTYA 247 (324)
Q Consensus 225 ~~a~~~~~~m~~~~~~--p~~~~~~ 247 (324)
+++.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9999999999987665 6654433
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.46 E-value=0.084 Score=36.09 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=10.4
Q ss_pred HHHHHhCcCCHHHHHHHHHHHH
Q 038109 284 LGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 284 l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
|.-++.+.|++++|.++++.+.
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444455555555444444
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.32 E-value=0.075 Score=44.64 Aligned_cols=76 Identities=13% Similarity=0.016 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh-----CCCchhHHHHHHHh
Q 038109 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK-----RDLKMGFKLRDYYE 320 (324)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~~~ 320 (324)
...++.++...|++++|...+..+.... +.+...|..++.+|.+.|+..+|.+.|++..+ .|+.|+.++..+|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3445666777788887777777665543 34667777788888888888888877777643 48888887777776
Q ss_pred hh
Q 038109 321 IN 322 (324)
Q Consensus 321 ~~ 322 (324)
..
T Consensus 253 ~i 254 (388)
T 2ff4_A 253 RI 254 (388)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.87 E-value=0.6 Score=32.29 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038109 174 TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQ 239 (324)
Q Consensus 174 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 239 (324)
...+..++.....|+-++-.+++.++.. +..|+....-.+..+|.+.|+..+|.+++.+..+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444455555555555555555322 2234455555555555555555555555555555554
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.63 E-value=0.23 Score=41.74 Aligned_cols=70 Identities=16% Similarity=0.020 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHH
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD-----DGQSVLYSTY 246 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 246 (324)
...++.++...|+++++...++.+....+- +...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 445677888899999999988888776544 888999999999999999999999988654 3888987763
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.16 Score=46.36 Aligned_cols=128 Identities=16% Similarity=0.061 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCC-hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHC------CCCcCH-----
Q 038109 177 NYLLTAYCFKGN-LTATSGVLKKMEEEKLGADARTYDALVLGACRAGR-VEEAFVLLRRMVDD------GQSVLY----- 243 (324)
Q Consensus 177 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~------~~~p~~----- 243 (324)
..++..+...++ .+.|..+|+++......-+......++..+.+.++ --+|.+++.+..+. ...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555666 47788888888876443222223334443333332 22455555444321 111110
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 244 ------STYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 244 ------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
.....=.+-|...|+++.|+.+-+...... +-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111111234667889999999888887763 3368889999999999999999998888773
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.29 E-value=0.38 Score=33.94 Aligned_cols=102 Identities=10% Similarity=0.005 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHCCCCCCH----HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCC
Q 038109 172 DLTAYNYLLTAYCFKGNL------TATSGVLKKMEEEKLGADA----RTYDALVLGA---CRAGRVEEAFVLLRRMVDDG 238 (324)
Q Consensus 172 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~----~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~ 238 (324)
|..+|-..+....+.|+. +...++|++.... ++|+. ..|--+.--| ...++.++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555666 5555666655443 23321 1122221111 12345555555555554332
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCC
Q 038109 239 QSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275 (324)
Q Consensus 239 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (324)
-+. ...|....+--.++|++..|.+++......+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 222 333333333344555555555555555554433
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.14 E-value=1 Score=31.80 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHccCCH------HHHHHHHHHHHhCCCCCC
Q 038109 102 RKSAYDTLIGRLCKLKKI------DEALRVVDIMAEGGFGLS 137 (324)
Q Consensus 102 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~~~ 137 (324)
|..+|-..+...-+.|+. ++..++|++.... ++|+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 444555555555555666 6666666666553 4443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.96 E-value=0.63 Score=31.75 Aligned_cols=67 Identities=12% Similarity=0.022 Sum_probs=29.6
Q ss_pred CChhhHHHHHHHHHccCcHHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 136 LSAITFHPILSVLTRGKRMEE---AWGLMEVMKEIRVS-PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
|+..+-..+..+++++.+... +..+++.+.+.+.+ -.....-.+.-++.+.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444444445555544333 44555554443211 01112222333455555555555555555543
No 238
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.67 E-value=0.88 Score=29.49 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 153 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
+.-+..+-++.+....+.|++....+.+++|-+.+++..|.++|+..+.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44556666666666667777777777777777777777777777766644
No 239
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=93.64 E-value=2.3 Score=34.96 Aligned_cols=77 Identities=13% Similarity=0.034 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcC--CHHHHHHHHHHHHhCCCchhHHHHHHHhhh
Q 038109 245 TYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE--RFNEANFILKEMNKRDLKMGFKLRDYYEIN 322 (324)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 322 (324)
....++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.+ ..+...+++..+...|+.+.+.+...+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577888899999999999999999754332 3445566666777654 346688999999999999888887776543
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.28 E-value=0.54 Score=30.47 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=26.3
Q ss_pred HHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038109 16 SVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR 63 (324)
Q Consensus 16 a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 63 (324)
.+++-+-|+.......-|++....+.+++|.+.+++..|.++++-.+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444555556666666666666666666666666555543
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.27 E-value=1.2 Score=40.65 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 234 (324)
+.+...|+++-|+++-++....-+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4455677888888887777665333 5677888888888888888888777765
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.18 E-value=1.9 Score=29.69 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 038109 153 RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215 (324)
Q Consensus 153 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 215 (324)
|.-+..+-++.+...++.|+.....+.+++|-+.+++..|.++|+..+.+- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 444566666666677777777777777777777777777777777766542 22333455444
No 243
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.75 E-value=8.3e-05 Score=62.88 Aligned_cols=240 Identities=10% Similarity=0.052 Sum_probs=122.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLK 117 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~ 117 (324)
|..|-.+....+++.+|.+-| .+ ..|+..|..++.+..+.|.+++..+.+...++...+..+=+.|+-+|++.+
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsy---Ik---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSY---IK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSS---CC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred HHHHHHHHHccCchHHHHHHH---Hh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 555555555555554444432 11 124444555666666666666666655555444333333345555666665
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCC--------------------CCCCHHHHH
Q 038109 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIR--------------------VSPDLTAYN 177 (324)
Q Consensus 118 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------~~~~~~~~~ 177 (324)
++.+..+.+ -.|+..-...+.+-|...|.++.|.-+|..+.... -..++.||-
T Consensus 131 rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 131 RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 554433222 12444444555555556666665555555442211 012345555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLG 257 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 257 (324)
.+-.+|...+.+.-|.-.--.+.- .......++..|-..|.+++.+.+++.-... -+....+|+-|.-.|++-
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-
T ss_pred HHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-
Confidence 555566666655555433333332 2222334455566667777777766655421 135566777776666665
Q ss_pred CHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHH
Q 038109 258 YYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
++++..+.++..-. +.|.. .+|++|.+..-|.++.-++..
T Consensus 277 ~PeKlmEHlklf~s---riNip---KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 277 KPQKMREHLELFWS---RVNIP---KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp CTTHHHHHHTTSSS---SSCCT---TTHHHHTTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH---hccHH---HHHHHHHHHhhHHHHHHHHhc
Confidence 34444433333222 22222 367888888888777766653
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.63 E-value=1.8 Score=29.71 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 203 KLGADARTYDALVLGACRAGRV---EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 203 ~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
+..|+..+--....+++++.+. .+++.+++++.+.+..-....+-.+.-++.+.|+++.|.++.+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4445666555566666666554 356777777766542112344444556777778888888877777764
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.28 E-value=3.5 Score=40.04 Aligned_cols=188 Identities=13% Similarity=0.098 Sum_probs=112.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCC-------------------
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRV------------------- 169 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------- 169 (324)
++..+...+..+.+.++..-. +-+...--.+..++...|++++|...|++... |+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 444455555555554433221 22333334555677788889999888875421 11
Q ss_pred ----CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 038109 170 ----SPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD----ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241 (324)
Q Consensus 170 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 241 (324)
..-..-|.-++..+.+.+.++.+.++-....+....-+ ...|..++..+...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 01124577788888899999988887765554322112 236888999999999999999999888765443
Q ss_pred CHHHHHHHHHHHHhcCCHHH------------HHHHHHHhCC-C-CCCcCHhHHHHHHHHHhCcCCHHHHHH-HHHHH
Q 038109 242 LYSTYAHVMGALLRLGYYAQ------------AVKFVMVCGG-R-DIKLDTELFGSLGSKLIGLERFNEANF-ILKEM 304 (324)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~------------a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m 304 (324)
...+..|+..++..|..+. ..+++....+ . .+...+.-|..|-..+...|++.+|-. +++..
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 3566777777776665543 3333322111 1 111122346666666677788777644 34444
No 246
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=91.12 E-value=2.7 Score=33.81 Aligned_cols=76 Identities=13% Similarity=0.040 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCC--HHHHHHHHHHHHhCCCchhHHHHHHHhhh
Q 038109 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLER--FNEANFILKEMNKRDLKMGFKLRDYYEIN 322 (324)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 322 (324)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+.+.|+.+.+.+..++...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 456788888889999999999988753332 33455566666766533 45677889999888888888877766543
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.12 E-value=1.2 Score=30.64 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcC-CCCHHHHHHH
Q 038109 32 EPTSAYYDDLVNAAGHER-DLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTLARLDKG-FPRKSAYDTL 109 (324)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~l 109 (324)
.++...-......|-+.. +.-+..+-++.+...++.|++......+++|.+..++..|.++|+-++.. .+...+|..+
T Consensus 49 Et~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 49 ETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp CCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred CcHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 444444444444455555 66677888888888888999999999999999999999999999988543 2444567777
Q ss_pred HHHH
Q 038109 110 IGRL 113 (324)
Q Consensus 110 i~~~ 113 (324)
++-.
T Consensus 129 lqEl 132 (152)
T 2y69_E 129 IQEL 132 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.91 E-value=6.9 Score=33.38 Aligned_cols=257 Identities=11% Similarity=0.026 Sum_probs=153.7
Q ss_pred ccchhHHHHHHHHhhhc--CCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCCCCchhhHhhhhchh----hh
Q 038109 11 FLIPQSVLVTRSFTKSG--AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRAR-DCCFNTANTFNFITNTEN----SL 83 (324)
Q Consensus 11 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~----~~ 83 (324)
+.+.+|++.+..+.... ......+......++..|...++++...+.+.-+.+ +|..+.. ...+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 55677887776666533 444566778899999999999999999888876654 3433322 223333221 12
Q ss_pred h--hHHHHHHHHHHHhc---C--CCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHH
Q 038109 84 S--VLSDLCRTLARLDK---G--FPR---KSAYDTLIGRLCKLKKIDEALRVVDIMAEG--GFGLS---AITFHPILSVL 148 (324)
Q Consensus 84 ~--~~~~a~~~~~~~~~---~--~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~ 148 (324)
. +.+.-..+.+.+.. + +-. ......|...+...|++.+|.+++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 22222223332211 1 121 124467889999999999999999998753 22211 35677788899
Q ss_pred HccCcHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCCHHHHHH----HHHH
Q 038109 149 TRGKRMEEAWGLMEVMKE----IRVSPD--LTAYNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADARTYDA----LVLG 217 (324)
Q Consensus 149 ~~~~~~~~a~~~~~~m~~----~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~----li~~ 217 (324)
...+++..|..++..... ....|+ ...|...+..+...+++.+|.+.|.+.... ...-|...+.. ++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999999887642 222232 346677888888999999998888776542 11113222221 1112
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--CCHHHHHHHHHHh
Q 038109 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL--GYYAQAVKFVMVC 269 (324)
Q Consensus 218 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~ 269 (324)
..-.+....-..+.........-++...|..++.+|... .+++.+...+...
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 222222222223333333333336677888899998765 3566666665443
No 249
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=90.39 E-value=2.8 Score=28.71 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=28.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcC--CHHHHHHHHHHHHhCCCchhHHHHHHHh
Q 038109 249 VMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLE--RFNEANFILKEMNKRDLKMGFKLRDYYE 320 (324)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 320 (324)
++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.+ ..+.+.+++..+...|+.+...+..++.
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~ 85 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 85 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 444444445555555544444321111 1222233333333332 1233444444444445444444444433
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.95 E-value=3.6 Score=28.64 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 038109 205 GADARTYDALVLGACRAGRV---EEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 205 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (324)
.|+..+--....++.++.+. .+++.+++.+.+.+..-.....-.|.-++.+.|+++.|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45555555566666666553 356667766665432112333333455677777777777777777664
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.73 E-value=10 Score=35.61 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=88.3
Q ss_pred HHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCChhhHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHhc
Q 038109 148 LTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLT--AYCFKGNLTATSGVLKKMEEEKLGADAR-TYD---ALVLGACRA 221 (324)
Q Consensus 148 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~---~li~~~~~~ 221 (324)
+.-.|+.+....++..+.... +..+...+.- ++...|+.+.+..+.+.+... .+.. -|. ++..+|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence 446677777777777766542 2333333333 344678889998888888764 2322 222 344567788
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCH-HHHHHH
Q 038109 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERF-NEANFI 300 (324)
Q Consensus 222 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~ 300 (324)
|+.....++++.+.... ..+......+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|+. .++.++
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99887777888887652 2233322223334445666666677766555543 44554444444555555443 567777
Q ss_pred HHHHH
Q 038109 301 LKEMN 305 (324)
Q Consensus 301 ~~~m~ 305 (324)
+..+.
T Consensus 652 L~~L~ 656 (963)
T 4ady_A 652 LDPLT 656 (963)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77774
No 252
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=88.12 E-value=2.9 Score=29.59 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 211 YDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 211 ~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
...++.-|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4445555555566666666655553
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.26 E-value=2.7 Score=32.85 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=24.1
Q ss_pred HccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 038109 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEE 201 (324)
Q Consensus 149 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 201 (324)
.+.|++++++.....-.+.. +.|...-..++..+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555554444444432 22444444455555555555555544444443
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.50 E-value=3.6 Score=29.52 Aligned_cols=119 Identities=10% Similarity=-0.047 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHH-H
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEE-KLGADA-------RTYDALVLGACRAGRVEEAFVLLRRMVDD-GQSVLYS-T 245 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~-~ 245 (324)
+-.-+..+...|.++.|.-+.+.+... +..|+. .++..+.+++...|++..|...|++..+. ..-|... +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334466677778888887777665432 112331 24566667777888888888888775432 1111111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 246 YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
...+ . ....... ......+...--.+..+|.+.|++++|+.+++.+..+
T Consensus 103 ~~~~-~---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPST-G---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccc-c---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1101 0 0000000 0011224445455788888999999999998876443
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.10 E-value=15 Score=31.29 Aligned_cols=256 Identities=13% Similarity=0.050 Sum_probs=141.7
Q ss_pred CCHHHHHHHHHHHHhc-----CCCCCchhhHhhhhchhhhhhHHHHHHHHHHHhcCC-CCHHHHHHH----HHHHHccCC
Q 038109 49 RDLETVRYLLNKRARD-----CCFNTANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTL----IGRLCKLKK 118 (324)
Q Consensus 49 ~~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~l----i~~~~~~~~ 118 (324)
++++.|.+.+..+.+. +...+......++..|...++++...+.+..+.+.. .-..+...+ +........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888877666542 233445567778889999999999888777664322 122222333 333333333
Q ss_pred HHH--HHHHHHHHHh--CC-CCC---ChhhHHHHHHHHHccCcHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHh
Q 038109 119 IDE--ALRVVDIMAE--GG-FGL---SAITFHPILSVLTRGKRMEEAWGLMEVMKEI--RVSPD---LTAYNYLLTAYCF 185 (324)
Q Consensus 119 ~~~--a~~~~~~m~~--~g-~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~~~~~ 185 (324)
.+. -..+.+.... .| +-. .......|...+...|++.+|.+++..+... |..+. ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 322 2222222111 11 111 1223356778888899999999999987642 22211 4567788899999
Q ss_pred cCChhhHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHH----HHHH
Q 038109 186 KGNLTATSGVLKKMEE----EKLGAD--ARTYDALVLGACRAGRVEEAFVLLRRMVDD-GQSVLYSTYAHVM----GALL 254 (324)
Q Consensus 186 ~~~~~~a~~~~~~m~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li----~~~~ 254 (324)
.+++..|..++.+... ....|+ ..-+...+..+...+++.+|.+.|.+.... ...-+...+..++ ....
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999988642 222222 245667777788899999998888776542 1111222111111 1111
Q ss_pred hcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCc--CCHHHHHHHHHHH
Q 038109 255 RLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGL--ERFNEANFILKEM 304 (324)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m 304 (324)
-.+....-..++.........++...|..++.+|... .+++.+.+.|...
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 1111111111111111111124667788888888643 5566666666543
No 256
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=85.61 E-value=0.018 Score=49.05 Aligned_cols=213 Identities=8% Similarity=0.109 Sum_probs=122.7
Q ss_pred CchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038109 69 TANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148 (324)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 148 (324)
.+..|..|..+..+.+.+.+|.+.|-+. .|...|..+|.+..+.|.+++-.+.+...++..-.| ..=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHH
Confidence 3455667777777777666665543322 233456677777777777777777776655543323 3335677777
Q ss_pred HccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--------------------CCCCH
Q 038109 149 TRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEK--------------------LGADA 208 (324)
Q Consensus 149 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------~~~~~ 208 (324)
++.++..+.++++. .||..-...+.+-|...|.++.|.-+|..+.... -.-++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77777655443332 2555555566666666666666665554432111 01255
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHH
Q 038109 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKL 288 (324)
Q Consensus 209 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 288 (324)
.||-.+-.+|...+++.-|.-.--.+.-. |+ -...++..|...|.+++-..+++...... ......|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 67777777777777776665544443321 11 12235566777777777777777666432 34566777777777
Q ss_pred hCcCCHHHHHHHH
Q 038109 289 IGLERFNEANFIL 301 (324)
Q Consensus 289 ~~~g~~~~a~~~~ 301 (324)
++- +.++.++.+
T Consensus 274 sKY-~PeKlmEHl 285 (624)
T 3lvg_A 274 SKF-KPQKMREHL 285 (624)
T ss_dssp HSS-CTTHHHHHH
T ss_pred Hhc-CHHHHHHHH
Confidence 653 344444443
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.28 E-value=25 Score=34.13 Aligned_cols=186 Identities=12% Similarity=0.058 Sum_probs=109.9
Q ss_pred hhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-------------------
Q 038109 76 ITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGL------------------- 136 (324)
Q Consensus 76 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~------------------- 136 (324)
++..+...+..+.+.++..... .+...--.+..+|...|++++|.+.|++... |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~---~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN---SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC---CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc---CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 3444444555555544333221 1333334566788889999999999976521 1111
Q ss_pred ----ChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCC--CC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH
Q 038109 137 ----SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVS--PD--LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA 208 (324)
Q Consensus 137 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 208 (324)
-..=|.-++..+-+.+.++.+.++-....+.... ++ ...|..+.+++...|++++|...+-.+..... -.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KK 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HH
Confidence 1123566777788888888888777665543221 11 23578899999999999999999988876543 34
Q ss_pred HHHHHHHHHHHhcCCHH------------HHHHHHHHHHHC----CCCcCHHHHHHHHHHHHhcCCHHHH-HHHHHHh
Q 038109 209 RTYDALVLGACRAGRVE------------EAFVLLRRMVDD----GQSVLYSTYAHVMGALLRLGYYAQA-VKFVMVC 269 (324)
Q Consensus 209 ~~~~~li~~~~~~g~~~------------~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 269 (324)
.....|+..+|..|..+ +..+++....+. ...| .-|..|-.-+...|++..| .-+|+.+
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p--~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQP--CWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCST--HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCC--CHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 56667777777666544 444444332211 1122 2345455556667777654 4444444
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.30 E-value=9.2 Score=32.43 Aligned_cols=61 Identities=5% Similarity=-0.059 Sum_probs=31.9
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038109 140 TFHPILSVLTRGKRMEEAWGLMEVMKEIR--VSPDLTAYNYLLTAYCFKGNLTATSGVLKKME 200 (324)
Q Consensus 140 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 200 (324)
+...+...|.+.|++++|.+.+.++...- ...-...+-.+++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44455555556666666666665555421 12223445555555555566665555555443
No 259
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=83.81 E-value=5.9 Score=27.96 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCCCCc-CHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHHHHHh
Q 038109 262 AVKFVMVCGGRDIKL-DTELFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDYYE 320 (324)
Q Consensus 262 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 320 (324)
+..+|..|...|+-. -...|......+...|++.+|.++|+.-.+++-.|-..+...|.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~ 143 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYR 143 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 667777776666543 35566777777778888888888888888888888777766554
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.59 E-value=11 Score=31.89 Aligned_cols=96 Identities=9% Similarity=-0.065 Sum_probs=70.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCcHHHHHHHHHHHHh---CCCCCCHH----H
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFG--LSAITFHPILSVLTRGKRMEEAWGLMEVMKE---IRVSPDLT----A 175 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~----~ 175 (324)
+...+...|.+.|+++.|.+.|.++...... --...+-.+++.+...+++..+...+.+... .+..|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 6678899999999999999999999874333 2356778888999999999999999888653 23333322 2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 176 YNYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 176 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
|.. ..+...+++..|...|-+....
T Consensus 213 ~~g--l~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYG--IHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHH--HGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHhChHHHHHHHHHHHhcc
Confidence 222 2234578899998888776543
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.51 E-value=20 Score=29.90 Aligned_cols=163 Identities=7% Similarity=-0.117 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCCCc---hhhHhhhhchhhh-hhHHHHHHH----HHHHhcCCCCH---H
Q 038109 37 YYDDLVNAAGHERDLETVRYLLNKRARD-CCFNTA---NTFNFITNTENSL-SVLSDLCRT----LARLDKGFPRK---S 104 (324)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~---~~~~~l~~~~~~~-~~~~~a~~~----~~~~~~~~p~~---~ 104 (324)
....|...+.+.|+.++..+++.....- +..|-+ .....++..+... +..+.-.++ ++......... .
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777665431 111111 1233334433332 111111111 12111110100 0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHccCcHHHHHHHHHHHHhC--CCCCCHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLS-----AITFHPILSVLTRGKRMEEAWGLMEVMKEI--RVSPDLTAYN 177 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~ 177 (324)
.=..++..|...|++.+|.+++.++.+.=-..| ..+|..-++.|...++..++...+...... .+.+++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 112456666677777777666666665211111 233444555566666666666666654432 1222322221
Q ss_pred H----HHHHHH-hcCChhhHHHHHHHH
Q 038109 178 Y----LLTAYC-FKGNLTATSGVLKKM 199 (324)
Q Consensus 178 ~----li~~~~-~~~~~~~a~~~~~~m 199 (324)
. -...+. ..++|..|...|-+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1 112233 566666666655443
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.45 E-value=14 Score=27.41 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCc
Q 038109 224 VEEAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKL 276 (324)
Q Consensus 224 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (324)
..++.++|..|...|+--. ..-|......+...|++.+|..+|+...+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555554443221 2334444444445555555555555544444333
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.23 E-value=6.1 Score=30.93 Aligned_cols=55 Identities=11% Similarity=0.014 Sum_probs=31.7
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC
Q 038109 112 RLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI 167 (324)
Q Consensus 112 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 167 (324)
...+.|++++|++....-++... -|...-..+++.+|-.|+++.|..-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34455666666666655555432 25555556666666666666666666555543
No 264
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=80.55 E-value=2.9 Score=31.57 Aligned_cols=47 Identities=9% Similarity=-0.144 Sum_probs=21.6
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCCch--hhHhhhhchhhhhhHHHHHHHHH
Q 038109 44 AAGHERDLETVRYLLNKRARDCCFNTAN--TFNFITNTENSLSVLSDLCRTLA 94 (324)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 94 (324)
..++.|+++.+..++ +.|..++.. .-...+...+..|+.+-+..+++
T Consensus 15 ~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 15 KATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 345666665554444 344433321 11223444455566555544444
No 265
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=79.48 E-value=7.5 Score=27.86 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHhCCCchhHHHHHH
Q 038109 280 LFGSLGSKLIGLERFNEANFILKEMNKRDLKMGFKLRDY 318 (324)
Q Consensus 280 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 318 (324)
.|......+...|++.+|.++|+.-.+.+-.|-..+...
T Consensus 98 fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~ 136 (164)
T 2wvi_A 98 FYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQ 136 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 344444444444555555555555555555554444333
No 266
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=78.82 E-value=7.7 Score=29.28 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=10.7
Q ss_pred HHccCCHHHHHHHHHHHHhCCC
Q 038109 113 LCKLKKIDEALRVVDIMAEGGF 134 (324)
Q Consensus 113 ~~~~~~~~~a~~~~~~m~~~g~ 134 (324)
.+..|+.+.+..+++.+.+.|.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCC
Confidence 3444555555555554444443
No 267
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.36 E-value=37 Score=30.36 Aligned_cols=222 Identities=9% Similarity=-0.012 Sum_probs=127.3
Q ss_pred hhhhchhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCc
Q 038109 75 FITNTENSLSVLSDLCRTLARLDKGFP-RKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR 153 (324)
Q Consensus 75 ~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 153 (324)
..+..+.+.+++.....++.. .| +...-.....+....|+..+|......+-..|-. ....+..++..+.+.|.
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCC
Confidence 334555666666655553332 24 4455566778888899998999988888887754 56678889998887664
Q ss_pred HHHH--HHHHHHHHhCC-----------CCCCH----------------------------HH---HHHHHHHHHhcCCh
Q 038109 154 MEEA--WGLMEVMKEIR-----------VSPDL----------------------------TA---YNYLLTAYCFKGNL 189 (324)
Q Consensus 154 ~~~a--~~~~~~m~~~~-----------~~~~~----------------------------~~---~~~li~~~~~~~~~ 189 (324)
.... ..=++.+...| +.++. .. +...+.-..+ .+.
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~ 230 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDA 230 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCH
Confidence 3221 11111111110 11111 00 0111112222 266
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038109 190 TATSGVLKKMEEEKLGADARTYD----ALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265 (324)
Q Consensus 190 ~~a~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 265 (324)
+.|...|....+... .+..... .+...+...+...++...+....... ++.....-.+....+.|+++.|...
T Consensus 231 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 231 ENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777754332 2333322 23333334453456666666644332 3333333344555678999999999
Q ss_pred HHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 266 VMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
|..|......-+...| -+.+++...|+.++|..+|+++..
T Consensus 308 ~~~l~~~~~~~~r~~Y-W~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRY-WQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHSCTTGGGSHHHHH-HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHccccccccHhHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9998775333233334 467788889999999999998864
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.12 E-value=19 Score=26.79 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 038109 189 LTATSGVLKKMEEEKLGAD-ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSV 241 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 241 (324)
..++.++|..|...|+.-. ..-|......+...|++.+|.++|+.-.+.+-+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555554444322 3334444444445555555555555554444444
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.33 E-value=12 Score=24.21 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=21.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCC
Q 038109 218 ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRD 273 (324)
Q Consensus 218 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (324)
+...|++++|..+.+.+. .||...+.+|. -.+.|..+++...+..+...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 344455555554443322 34444443332 224444444444444444443
No 270
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=76.91 E-value=17 Score=27.82 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=12.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHH
Q 038109 179 LLTAYCFKGNLTATSGVLKKME 200 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~m~ 200 (324)
-++.+....++++|..++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3455555666666666655444
No 271
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=76.78 E-value=23 Score=27.11 Aligned_cols=90 Identities=7% Similarity=-0.120 Sum_probs=47.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhc--CCCC----CchhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038109 40 DLVNAAGHERDLETVRYLLNKRARD--CCFN----TANTFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRL 113 (324)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~ 113 (324)
--++.+...+++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+.+.. .++...-...+..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 3467788888999999998876542 2221 111222223333333333334444444433 34444455555666
Q ss_pred HccCCHHHHHHHHHHHH
Q 038109 114 CKLKKIDEALRVVDIMA 130 (324)
Q Consensus 114 ~~~~~~~~a~~~~~~m~ 130 (324)
.+.|+.++|.++|-+.+
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 66677777666665443
No 272
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=76.47 E-value=7.5 Score=29.34 Aligned_cols=28 Identities=18% Similarity=0.039 Sum_probs=17.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCC
Q 038109 42 VNAAGHERDLETVRYLLNKRARDCCFNT 69 (324)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~~ 69 (324)
+...++.|+.+.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 4445666777777777766655554444
No 273
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=75.80 E-value=29 Score=27.81 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRAR 63 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 63 (324)
...+|.-|...|+.++|...++++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 46778888888999999988887643
No 274
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.67 E-value=59 Score=30.78 Aligned_cols=235 Identities=11% Similarity=-0.011 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCCCCCc--hhhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 038109 52 ETVRYLLNKRARDCCFNTA--NTFNFITNTENSLSVLSDLCRTLARLDKGFPRKS-AYDTLIGRLCKLKKIDEALRVVDI 128 (324)
Q Consensus 52 ~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~ 128 (324)
+++.+.+..+....- +.. ..--.+...+.-.|+-+....++..+.+...+.. -...+.-++...|+.+.+..+++.
T Consensus 471 eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~ 549 (963)
T 4ady_A 471 IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITK 549 (963)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHH
Confidence 355555555554321 111 1222344455667777777777777654333222 223344455578898989888888
Q ss_pred HHhCCCCCChhhHH--HHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 038109 129 MAEGGFGLSAITFH--PILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGA 206 (324)
Q Consensus 129 m~~~g~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 206 (324)
+... ..|...--. ++.-+|+..|+.....++++.+.... ..++.....+.-+....|+.+.+.++++.+.+.+ .|
T Consensus 550 L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~ 626 (963)
T 4ady_A 550 MLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NA 626 (963)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CH
T ss_pred HHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CH
Confidence 8764 222222211 23346778889888888998888652 2233333333334445777788888887766653 34
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHH--hcC-------CHHHHHHHHHHh-CCCCCC
Q 038109 207 DARTYDALVLGACRAGRV-EEAFVLLRRMVDDGQSVLYSTYAHVMGALL--RLG-------YYAQAVKFVMVC-GGRDIK 275 (324)
Q Consensus 207 ~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g-------~~~~a~~~~~~~-~~~~~~ 275 (324)
.+.--..+.-+....|.. .++..++..+... +|..+-...+-++. -.| ++...++.+... .+..-.
T Consensus 627 ~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d 703 (963)
T 4ady_A 627 HVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQE 703 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccccc
Confidence 444444444455545443 6788888888754 33333322333333 222 344444433332 222223
Q ss_pred cCHhHHHHHHHHHhCcCC
Q 038109 276 LDTELFGSLGSKLIGLER 293 (324)
Q Consensus 276 ~~~~~~~~l~~~~~~~g~ 293 (324)
++...-..+..+....|.
T Consensus 704 ~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 704 GLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 455666666677776654
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.65 E-value=22 Score=27.40 Aligned_cols=208 Identities=10% Similarity=0.038 Sum_probs=87.2
Q ss_pred hhhchhhhhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHcc
Q 038109 76 ITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA---ITFHPILSVLTRG 151 (324)
Q Consensus 76 l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~ 151 (324)
.+...++.|+.+.+..+++.-.... .+...-.+.+...+..|+.+ +++.+.+.|..++. ...+. +...+..
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~ 82 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATP-FLLAAIA 82 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCH-HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCH-HHHHHHc
Confidence 3444566777776666555321111 10111123344445566654 34444455654432 22222 3334445
Q ss_pred CcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH------------HHHHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSPDL---TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART------------YDALVL 216 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------------~~~li~ 216 (324)
|+.+ +++.+.+.|..++. ..++.+ ...+..|+.+ +++.+.+.|..++... -.+.+.
T Consensus 83 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~ 153 (285)
T 1wdy_A 83 GSVK----LLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153 (285)
T ss_dssp TCHH----HHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred CCHH----HHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence 5544 44444455544432 222333 3334556544 3444455555443210 112344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhH--HHHHHHHHhCc
Q 038109 217 GACRAGRVEEAFVLLRRMVDDGQSVL---YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTEL--FGSLGSKLIGL 291 (324)
Q Consensus 217 ~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 291 (324)
..+..|+.+-+..+++. .|..++ ..-.+.+.. .+..++......+++.+.+.|..++... -.+.+...++.
T Consensus 154 ~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 44556665544444332 143332 222233333 3344553333344444444554443221 12234444455
Q ss_pred CCHHHHHHHH
Q 038109 292 ERFNEANFIL 301 (324)
Q Consensus 292 g~~~~a~~~~ 301 (324)
|+.+-+..++
T Consensus 230 ~~~~~v~~Ll 239 (285)
T 1wdy_A 230 KHLGLVQRLL 239 (285)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6655444333
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.57 E-value=32 Score=27.66 Aligned_cols=183 Identities=11% Similarity=0.045 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH---
Q 038109 119 IDEALRVVDIMAEGGFGL-SAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSG--- 194 (324)
Q Consensus 119 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~--- 194 (324)
+++.+.-++.-.+.|--- -...|.++..-|.+.+++++|.+++..-. ..+.+.|+...|.+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHH
Confidence 445555555544444111 23577777788888888888877765432 24456788766555
Q ss_pred -HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHH----HCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038109 195 -VLKKMEEEKLGADARTYDALVLGACRAGRVE-EAFVLLRRMV----DDGQ--SVLYSTYAHVMGALLRLGYYAQAVKFV 266 (324)
Q Consensus 195 -~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~----~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~ 266 (324)
+.+-..+.+++++......++..+..-..-+ .=.++++++. +.|- .-++..+..+...|.+.|++.+|+..|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4666777899999998888888876643211 2233444443 2322 235677788888999999999999876
Q ss_pred HHhCCCCCCcCHhHHHHHHHHHhCc---CCHHHHHH-----HHHHHHhCCCchhHHHHHHHh
Q 038109 267 MVCGGRDIKLDTELFGSLGSKLIGL---ERFNEANF-----ILKEMNKRDLKMGFKLRDYYE 320 (324)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~-----~~~~m~~~~~~~~~~~~~~~~ 320 (324)
-. |-.-+...+..++.-+... |...++-- ++.-+.-.++..-+.+.+.|.
T Consensus 158 i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 158 ML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred Hh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 41 1111355555555544444 66555433 344333345544445544443
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.27 E-value=7.9 Score=30.02 Aligned_cols=210 Identities=11% Similarity=0.031 Sum_probs=97.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCCch---hhHhhhhchhhhhhHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Q 038109 40 DLVNAAGHERDLETVRYLLNKRARDCCFNTAN---TFNFITNTENSLSVLSDLCRTLARLDKG-FPRKSAYDTLIGRLCK 115 (324)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~li~~~~~ 115 (324)
..+...++.|+++.+..++ +.|..++.. .-...+...+..|+.+-+..+++.=... .++..-. +.+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA-TPFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC-CHHHHHHH
Confidence 3455566777776555544 344333321 1123444456667766555554431110 0111111 22233344
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHH------------HHHHH
Q 038109 116 LKKIDEALRVVDIMAEGGFGLSA---ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTA------------YNYLL 180 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------------~~~li 180 (324)
.|+.+ +++.+.+.|..++. ..++. +...+..|+.+ +++.+.+.|..++... -.+.+
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 55554 44455556655442 22223 33445556654 4444455554443210 11233
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHh
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGAD---ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYST--YAHVMGALLR 255 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~ 255 (324)
...+..|+.+-+..+++. .|..++ ....+.+. ..+..++.+...++++.+.+.|..++... -...+...++
T Consensus 153 ~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 228 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228 (285)
T ss_dssp HHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 444556666554444432 143332 22223333 33445665555667777777776554311 1123445566
Q ss_pred cCCHHHHHHHHH
Q 038109 256 LGYYAQAVKFVM 267 (324)
Q Consensus 256 ~g~~~~a~~~~~ 267 (324)
.|+.+-+..+++
T Consensus 229 ~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 229 KKHLGLVQRLLE 240 (285)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHh
Confidence 788877776665
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=73.14 E-value=9.1 Score=30.12 Aligned_cols=47 Identities=15% Similarity=0.026 Sum_probs=19.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhhHHHHHHHH
Q 038109 43 NAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSVLSDLCRTL 93 (324)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 93 (324)
...+..|+.+.+..++ +.|..++...-...+...+..|+.+-+..++
T Consensus 36 ~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 36 YYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp HHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3444566665444443 3344333322122333334445544443333
No 279
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.25 E-value=21 Score=24.51 Aligned_cols=68 Identities=9% Similarity=0.068 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038109 169 VSPDLTAYNYLLTAYCFKGNL---TATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 169 ~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 236 (324)
..|+..+--.+..++.++.+. ..+..+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+.+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344555555555555555543 34566666666554321234444455666677777777777766664
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.06 E-value=17 Score=23.49 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=7.8
Q ss_pred hcCCHHHHHHHHHHhCCC
Q 038109 255 RLGYYAQAVKFVMVCGGR 272 (324)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~ 272 (324)
+.|..+++...+..+...
T Consensus 80 rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HTTCHHHHHHHHHHHHTC
T ss_pred hcccHHHHHHHHHHHHhC
Confidence 344444444444444333
No 281
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.51 E-value=25 Score=25.18 Aligned_cols=59 Identities=5% Similarity=0.014 Sum_probs=32.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 038109 141 FHPILSVLTRGKRMEEAWGLMEVMKEIR-VSPD-------LTAYNYLLTAYCFKGNLTATSGVLKKM 199 (324)
Q Consensus 141 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m 199 (324)
+-.-+..+...+.++.|+-+.+.+.... ..|+ ..++..+.+++...+++..|...|++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3344455566666666665555543221 1222 124455666777777777777777764
No 282
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=71.23 E-value=18 Score=25.89 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038109 211 YDALVLGACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 211 ~~~li~~~~~~g~~~~a~~~~~~m~ 235 (324)
...++.-|...|+.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556777777788888877777765
No 283
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.07 E-value=39 Score=27.16 Aligned_cols=112 Identities=8% Similarity=-0.014 Sum_probs=63.4
Q ss_pred hhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHH----HHHHHHHhCCCCCChhhHHHHHHH
Q 038109 72 TFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEAL----RVVDIMAEGGFGLSAITFHPILSV 147 (324)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~----~~~~~m~~~g~~~~~~~~~~li~~ 147 (324)
+|.++.+-|.+.+++++|.+++..- ...+.+.|+...|- -+++...+.+.+++......++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444555566667777776664432 22334445544433 345566667777787777777776
Q ss_pred HHccCc-----HHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhhHHHHH
Q 038109 148 LTRGKR-----MEEAWGLMEVMKEIRV--SPDLTAYNYLLTAYCFKGNLTATSGVL 196 (324)
Q Consensus 148 ~~~~~~-----~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 196 (324)
+..... ..-..+....-.+.|- .-+......+...|.+.|++.+|...|
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 655331 1222223333333322 225666777888888888888887755
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.20 E-value=12 Score=28.25 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCC
Q 038109 226 EAFVLLRRMVDDGQSVL-YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIK 275 (324)
Q Consensus 226 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (324)
++.++|..|...|+--. ...|......+...|++.+|..+|+...+.+-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44445555554443221 233444444444555555555555444444333
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.79 E-value=25 Score=25.16 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 038109 192 TSGVLKKMEEEKLGAD-ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242 (324)
Q Consensus 192 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 242 (324)
+.++|..|...|+.-. ..-|..-...+...|++.+|.++|+.-.+.+-+|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4455555555554322 33444445555555666666666655555555553
No 286
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=69.65 E-value=41 Score=27.33 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRA 62 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~ 62 (324)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 5677888888899999988888775
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=68.03 E-value=49 Score=27.17 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038109 38 YDDLVNAAGHERDLETVRYLLNKRAR 63 (324)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 63 (324)
...+|.-|...++.++|...++++..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 56677778888888888888877643
No 288
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=66.88 E-value=9.7 Score=28.66 Aligned_cols=54 Identities=15% Similarity=-0.010 Sum_probs=31.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhCCCCCCcCHh--HHHHHHHHHhCcCCHHHHHHHHHHHHhC
Q 038109 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTE--LFGSLGSKLIGLERFNEANFILKEMNKR 307 (324)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 307 (324)
+...++.|+.+-+.-+++ .|..++.. .-.+-+...+..|+.+.+.++.+.+.+.
T Consensus 181 L~~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 181 LHIAARENRYDCVVLFLS----RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp HHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHhHHHHHHH----cCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444566777766555543 33333211 1123445566778888888888887653
No 289
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.71 E-value=23 Score=22.90 Aligned_cols=91 Identities=15% Similarity=-0.015 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHH
Q 038109 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300 (324)
Q Consensus 221 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (324)
.-..++|..+-+.+...+. ....--+=+..+...|++++|..+.+.. ..||...|-.|.. .+.|--+++..-
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 3456788888887776654 2222222334688999999999865443 3788888766544 467888889988
Q ss_pred HHHHHhCCCchhHHHHHHH
Q 038109 301 LKEMNKRDLKMGFKLRDYY 319 (324)
Q Consensus 301 ~~~m~~~~~~~~~~~~~~~ 319 (324)
+.++..+|-.-...+...+
T Consensus 91 L~~la~sg~p~~q~Fa~g~ 109 (115)
T 2uwj_G 91 LAGLGGSSDPALADFAAGM 109 (115)
T ss_dssp HHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 8899888876666655444
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=66.37 E-value=4.6 Score=30.42 Aligned_cols=209 Identities=12% Similarity=0.023 Sum_probs=93.7
Q ss_pred chhhhhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHccCcH
Q 038109 79 TENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAIT---FHPILSVLTRGKRM 154 (324)
Q Consensus 79 ~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~~~~ 154 (324)
..++.|+.+....+++.-.... ++.. -.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|+.
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~ 89 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQPDKE-NVTLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred HHHHcCChHHHHHHHHcCCCcCCCCCC-CCCHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence 3466777777766665321111 1211 12344555667776544 44445554333211 12234445556665
Q ss_pred HHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 038109 155 EEAWGLMEVMKEIRVSPDL---TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADA---RTYDALVLGACRAGRVEEAF 228 (324)
Q Consensus 155 ~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~ 228 (324)
+- ++.+.+.|..++. ...+. +...+..|+.+- ++.+.+.|..++. ...+.+..+..+ +...+..
T Consensus 90 ~~----v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~----~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~ 159 (240)
T 3eu9_A 90 SM----VVQLMKYGADPSLIDGEGCSC-IHLAAQFGHTSI----VAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPT 159 (240)
T ss_dssp HH----HHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTH
T ss_pred HH----HHHHHHcCCCCcccCCCCCCH-HHHHHHcCHHHH----HHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHH
Confidence 54 4444555654432 22233 344455666553 4444455554432 223334444333 3333333
Q ss_pred HHHHHHHHCCCCcCHHH---HHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 038109 229 VLLRRMVDDGQSVLYST---YAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMN 305 (324)
Q Consensus 229 ~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 305 (324)
+++ .+.|..++... -...+...+..|+.+-+..+++.-..... .+..-. +.+....+.|+.+-+.-+++...
T Consensus 160 ~~L---~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 160 RLL---LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA-QNIKGE-SALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHH---HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-BCTTSC-BHHHHHHHTTCHHHHHHHHHHC-
T ss_pred HHH---HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCC-CHHHHHHHcCcHHHHHHHHHhhh
Confidence 333 33443332211 11234555677888877766655322211 121111 23444455677766655555443
Q ss_pred hC
Q 038109 306 KR 307 (324)
Q Consensus 306 ~~ 307 (324)
+.
T Consensus 235 ~~ 236 (240)
T 3eu9_A 235 AK 236 (240)
T ss_dssp --
T ss_pred cc
Confidence 33
No 291
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.41 E-value=25 Score=22.80 Aligned_cols=91 Identities=15% Similarity=0.005 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHH
Q 038109 221 AGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFI 300 (324)
Q Consensus 221 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 300 (324)
.-..++|..+-+.+...+. ....--+=+..+...|++++|..+.+.. ..||...|-.|.. .+.|--+++..-
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 3457888888888776654 2222222334688999999999876554 3688888766554 467888888888
Q ss_pred HHHHHhCCCchhHHHHHHH
Q 038109 301 LKEMNKRDLKMGFKLRDYY 319 (324)
Q Consensus 301 ~~~m~~~~~~~~~~~~~~~ 319 (324)
+.++..+|-.-...+...+
T Consensus 92 L~~la~sg~p~~q~Fa~g~ 110 (116)
T 2p58_C 92 LNRLARSQDPRIQTFVNGM 110 (116)
T ss_dssp HHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 8888888776666655444
No 292
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.63 E-value=56 Score=26.55 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=74.5
Q ss_pred hhHhhhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHH
Q 038109 72 TFNFITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDE----ALRVVDIMAEGGFGLSAITFHPILSV 147 (324)
Q Consensus 72 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~ 147 (324)
+|.++.+-|.+.+++++|.+++..- ...+.+.|+... +.-+++...+.++++|......++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4445556677777888777765432 223333444433 33344555667777777777777777
Q ss_pred HHccCcHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038109 148 LTRGKRME-EAWGLMEVMK----EIR--VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220 (324)
Q Consensus 148 ~~~~~~~~-~a~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 220 (324)
+.....-+ .=..+.+++. +.| ..-|......+...|.+.+++.+|...|- .|-.+....|..++.-+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH
Confidence 66554311 1122222222 222 22345666778888889999888887762 2333334566555544444
Q ss_pred cC
Q 038109 221 AG 222 (324)
Q Consensus 221 ~g 222 (324)
.+
T Consensus 180 ~~ 181 (336)
T 3lpz_A 180 QD 181 (336)
T ss_dssp TS
T ss_pred hc
Confidence 43
No 293
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=64.45 E-value=33 Score=23.86 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=9.7
Q ss_pred HHHhcCChhhHHHHHHHHHHC
Q 038109 182 AYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 182 ~~~~~~~~~~a~~~~~~m~~~ 202 (324)
++.+.|++++|.+..+.+.+.
T Consensus 86 g~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 86 GCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHHHhc
Confidence 444444444444444444443
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.40 E-value=31 Score=23.46 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=8.7
Q ss_pred HHHHHHhcCChhhHHHHHHHH
Q 038109 179 LLTAYCFKGNLTATSGVLKKM 199 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~m 199 (324)
++.-|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 333344444444444444443
No 295
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=64.22 E-value=34 Score=23.91 Aligned_cols=58 Identities=3% Similarity=0.040 Sum_probs=26.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038109 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222 (324)
Q Consensus 164 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 222 (324)
+.+.|+.++ .--..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444454422 2233344444444445555555555555544444444444444444443
No 296
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=62.34 E-value=34 Score=23.35 Aligned_cols=32 Identities=13% Similarity=-0.008 Sum_probs=13.1
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038109 188 NLTATSGVLKKMEEEKLGADARTYDALVLGAC 219 (324)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 219 (324)
..-.|.++++.+.+.+...+..|..--+..+.
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 64 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFE 64 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 34444444444444443334333333333333
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=61.91 E-value=29 Score=24.39 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=12.4
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHH
Q 038109 142 HPILSVLTRGKRMEEAWGLMEVMK 165 (324)
Q Consensus 142 ~~li~~~~~~~~~~~a~~~~~~m~ 165 (324)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344455555555555555555543
No 298
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=61.58 E-value=33 Score=25.49 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=23.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCch--hhHhhhhchhhhhhHHHHHHHHHH
Q 038109 42 VNAAGHERDLETVRYLLNKRARDCCFNTAN--TFNFITNTENSLSVLSDLCRTLAR 95 (324)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 95 (324)
+...++.|+.+.+..+++. .|..++.. .-...+...+..|+.+-+..+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3445566666555554432 13333321 111233334555666555555543
No 299
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=60.66 E-value=39 Score=23.40 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=25.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038109 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222 (324)
Q Consensus 164 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 222 (324)
+.+.|+.++. .-..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3444444332 222333444444444455555555555444444444444444444433
No 300
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=60.01 E-value=35 Score=25.79 Aligned_cols=53 Identities=8% Similarity=0.058 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 038109 190 TATSGVLKKMEEEKLGAD-ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242 (324)
Q Consensus 190 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 242 (324)
+++..+|..|...|+.-. ..-|......+...|++.+|.++|+.-.+.+-+|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 456666666666655433 44455566666666777777777766666665553
No 301
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=59.83 E-value=35 Score=23.68 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=24.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038109 164 MKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222 (324)
Q Consensus 164 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 222 (324)
+.+.|+.++.. -..++..+...+ .-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34444443322 223333333333 4455555555555544444444444444444433
No 302
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=59.45 E-value=70 Score=25.98 Aligned_cols=168 Identities=12% Similarity=0.000 Sum_probs=100.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHH----HHHHHHHHhCCCCCCHHHHHHHH
Q 038109 105 AYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEA----WGLMEVMKEIRVSPDLTAYNYLL 180 (324)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~m~~~~~~~~~~~~~~li 180 (324)
.|.++..=|.+.+++++|++++..-. ..+.+.|+...| .-+.+-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45666777888999999998864322 223344554433 33446666777888888777777
Q ss_pred HHHHhcCChhh-HHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038109 181 TAYCFKGNLTA-TSGVLKKME----EEK--LGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGAL 253 (324)
Q Consensus 181 ~~~~~~~~~~~-a~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 253 (324)
..+.....-+- =.++.+++. +.| ..-|......+...|.+.+++.+|..-|- .|-.++...|..++--+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 77766554221 122233322 222 33467777888889999999999887762 24455556776666555
Q ss_pred HhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 254 LRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
...+.. ..+|...-..++ .|...+++..|..+++...+
T Consensus 178 ~~~~~~--------------~e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDES--------------HTAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCG--------------GGHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCC--------------ccHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 444431 122333333333 35556788888887766543
No 303
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=59.13 E-value=43 Score=23.39 Aligned_cols=64 Identities=9% Similarity=0.141 Sum_probs=45.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038109 196 LKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260 (324)
Q Consensus 196 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 260 (324)
-+.+.+.|.. ...--..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 15 ~~~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 15 RMSIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3456677877 444555667777777778889999999988776677777777788888877543
No 304
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.89 E-value=44 Score=23.50 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 038109 190 TATSGVLKKMEEEKLGAD-ARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVL 242 (324)
Q Consensus 190 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 242 (324)
+++.++|..|...|+.-. ..-|..-...+...|++.+|.++|+.-.+.+-+|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 346666666666655432 44455555666666666666666666666665553
No 305
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=58.73 E-value=20 Score=26.67 Aligned_cols=19 Identities=5% Similarity=0.062 Sum_probs=10.6
Q ss_pred HHHHhcCCCHHHHHHHHHH
Q 038109 42 VNAAGHERDLETVRYLLNK 60 (324)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~ 60 (324)
+...++.|+++....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445556666666655544
No 306
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=58.54 E-value=43 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 038109 211 YDALVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 211 ~~~li~~~~~~g~~~~a~~~~~~m 234 (324)
...+|.-|...|+.++|.+.++++
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 344555555556666665555555
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=58.49 E-value=43 Score=23.19 Aligned_cols=62 Identities=8% Similarity=0.005 Sum_probs=41.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038109 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259 (324)
Q Consensus 197 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 259 (324)
+.+.+.|..++. .-..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 11 ~~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 446677777553 33445555656666777888888888776666777766677777777744
No 308
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=57.96 E-value=41 Score=23.45 Aligned_cols=32 Identities=9% Similarity=-0.087 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038109 189 LTATSGVLKKMEEEKLGADARTYDALVLGACR 220 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 220 (324)
.-.|.++++.+.+.+...+..|..--+..+..
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 64 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDD 64 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33444444444444333333333333333333
No 309
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=57.33 E-value=56 Score=24.20 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=17.2
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038109 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKG 187 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 187 (324)
.+.+.|+-.+.+|.+.| .|.-..-..++.+....|
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 45555555555555555 444444444444444444
No 310
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=57.11 E-value=21 Score=29.05 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 038109 211 YDALVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 211 ~~~li~~~~~~g~~~~a~~~~~~m 234 (324)
...++.-|...|+.++|.+.++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 445556666666666666666555
No 311
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=56.10 E-value=59 Score=24.04 Aligned_cols=33 Identities=15% Similarity=-0.053 Sum_probs=14.1
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYC 184 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 184 (324)
.+.+.|+-.+.+|.+.|-.|.-..-..++.+..
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 444444444444444444443333333333333
No 312
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=56.03 E-value=37 Score=24.13 Aligned_cols=45 Identities=11% Similarity=0.038 Sum_probs=20.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEE--KLGADARTYDALVLGACRAG 222 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g 222 (324)
.++..+...+..-.|.++++.+.+. +...+..|.---+..+...|
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444455555555555544 44444444333344444443
No 313
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=56.01 E-value=32 Score=24.79 Aligned_cols=14 Identities=0% Similarity=0.147 Sum_probs=7.3
Q ss_pred HHccCCHHHHHHHH
Q 038109 113 LCKLKKIDEALRVV 126 (324)
Q Consensus 113 ~~~~~~~~~a~~~~ 126 (324)
.+..|+.+....++
T Consensus 12 A~~~g~~~~v~~ll 25 (201)
T 3hra_A 12 AANQRDTKKVKEIL 25 (201)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHH
Confidence 34456665555544
No 314
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.55 E-value=58 Score=23.79 Aligned_cols=17 Identities=18% Similarity=-0.121 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHhcCC
Q 038109 172 DLTAYNYLLTAYCFKGN 188 (324)
Q Consensus 172 ~~~~~~~li~~~~~~~~ 188 (324)
+..+-...+.++.+.|+
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33333334444444433
No 315
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.95 E-value=19 Score=28.26 Aligned_cols=203 Identities=9% Similarity=0.003 Sum_probs=102.0
Q ss_pred hhhchhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccC
Q 038109 76 ITNTENSLSVLSDLCRTLARLDKGFPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA---ITFHPILSVLTRGK 152 (324)
Q Consensus 76 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~ 152 (324)
.+...+..|+.+-+..+++.=.. ++...-.+.+...+..|+.+-+ +.+.+.|..++. .-++. +...+..|
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g 106 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGAL--KNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTA-LYYAVDSG 106 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGG--GSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcH-HHHHHHcC
Confidence 34455667888777666654211 1111113345555667776544 444556665543 22333 34455667
Q ss_pred cHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 038109 153 RMEEAWGLMEVMKEIRVSPDLT---AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADAR-TYDALVLGACRAGRVEEAF 228 (324)
Q Consensus 153 ~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~ 228 (324)
+.+-+..+++ .|..++.. -+.+.+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+-+.
T Consensus 107 ~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 107 NMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp CHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence 7665544444 35444322 223445555667776544 4444555443211 2334455566788887766
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHH
Q 038109 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKE 303 (324)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 303 (324)
-+++.-..-.. .+..-.+..+...+..|+.+ +.+.+.+.|..++.... .-+..|+.+-+.-+++.
T Consensus 179 ~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 179 LLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHH
T ss_pred HHHHcCCCCCc-ccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHc
Confidence 66655332222 12122222344445567754 44456677777666542 12445666555555543
No 316
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=54.31 E-value=34 Score=20.73 Aligned_cols=32 Identities=6% Similarity=-0.068 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038109 189 LTATSGVLKKMEEEKLGADARTYDALVLGACR 220 (324)
Q Consensus 189 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 220 (324)
.-.+.++++.+.+.+...+..|..-.+..+.+
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 33444444444444333344444333444333
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=54.16 E-value=48 Score=23.14 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=44.9
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 038109 127 DIMAEGGFGLSAITFHPILSVLTRGK-RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLT 190 (324)
Q Consensus 127 ~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 190 (324)
+.+.+.|+.++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-..
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 45677888876543 34556666665 67789999999988876667777777777888777543
No 318
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=53.99 E-value=35 Score=24.72 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=6.7
Q ss_pred HHHHHHHHHHCCCCc
Q 038109 227 AFVLLRRMVDDGQSV 241 (324)
Q Consensus 227 a~~~~~~m~~~~~~p 241 (324)
..++.+.+.+.|..+
T Consensus 93 ~~~iv~~Ll~~Gadi 107 (186)
T 3t8k_A 93 TTELCKIFLEKGADI 107 (186)
T ss_dssp HHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHCCCCC
Confidence 344444444444433
No 319
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.93 E-value=3.6 Score=31.75 Aligned_cols=29 Identities=10% Similarity=-0.177 Sum_probs=20.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCc
Q 038109 42 VNAAGHERDLETVRYLLNKRARDCCFNTA 70 (324)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 70 (324)
+...++.|+.+....+++.+.+.|..++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~ 37 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTD 37 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcch
Confidence 44556778888888888877776655553
No 320
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=53.02 E-value=42 Score=22.91 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=44.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038109 198 KMEEEKLGADARTYDALVLGACRAG-RVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260 (324)
Q Consensus 198 ~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 260 (324)
.+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 466778875543 444566666666 67789999999998877777777777788888777543
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=52.38 E-value=39 Score=22.86 Aligned_cols=44 Identities=7% Similarity=0.037 Sum_probs=22.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038109 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG 222 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 222 (324)
++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44444444455555555555555554445444444444444444
No 322
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=52.29 E-value=4.5 Score=31.18 Aligned_cols=55 Identities=9% Similarity=-0.015 Sum_probs=31.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHHHHH--ccCcHHHHHHHHHHH
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEGGFGLSAI-------TFHPILSVLT--RGKRMEEAWGLMEVM 164 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-------~~~~li~~~~--~~~~~~~a~~~~~~m 164 (324)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334456677777777777666666554422 2334443332 557776666666554
No 323
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=50.08 E-value=78 Score=23.66 Aligned_cols=54 Identities=13% Similarity=0.012 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCc-----HHHHHHHHHHHHhCCC
Q 038109 116 LKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKR-----MEEAWGLMEVMKEIRV 169 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~ 169 (324)
..+.+.|+-.+-+|.+.|-.|.-..-..++-+.-.-|. ...|...++.....|.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 35677777777777777665554444444444333332 2334444444444443
No 324
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=49.94 E-value=86 Score=24.13 Aligned_cols=122 Identities=7% Similarity=-0.085 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 038109 171 PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG-RVEEAFVLLRRMVDDGQSVLYSTYAHV 249 (324)
Q Consensus 171 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l 249 (324)
++..+-...+.+....|+.+ +...+..+.+. ++...-...+.++.+.| ....+...+..+.+. ++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLKD---PNGDVRNWAAFAININKYDNSDIRDCFVEMLQD---KNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC---SCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC---CCHHHHHHH
Confidence 45555555666666666533 33333333332 35444444555555544 123444444444432 444455556
Q ss_pred HHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHh
Q 038109 250 MGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNK 306 (324)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 306 (324)
+.++.+.|+......+...+... + .-...+.++.+.|. .++...+.++.+
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~d~----~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELKKN----T--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHTSS----S--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHHhCCHhhHHHHHHHhcCc----c--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 66666666544444444444331 2 12234555555555 345555555544
No 325
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=49.11 E-value=37 Score=25.14 Aligned_cols=171 Identities=10% Similarity=0.058 Sum_probs=74.4
Q ss_pred hhchhhhhhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHcc
Q 038109 77 TNTENSLSVLSDLCRTLARLDKG--FPRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA---ITFHPILSVLTRG 151 (324)
Q Consensus 77 ~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~ 151 (324)
+...+..|+.+....+++.-... .++..-++ .+...+..|+.+ +++.+.+.|..++. ..++.+ ...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPL-HIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHH-HHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHH-HHHHHc
Confidence 45556778888777777653221 12222222 233344556654 34444455554432 222233 334445
Q ss_pred CcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHH
Q 038109 152 KRMEEAWGLMEVMKEIRVSPDL---TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART--YDALVLGACRAGRVEE 226 (324)
Q Consensus 152 ~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~ 226 (324)
|+.+ +++.+.+.|..++. .-.+.+ ...+..|+.+-+. .+.+.|..++... -.+.+...+..|+.+-
T Consensus 84 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 154 (231)
T 3aji_A 84 GXDE----IVKALLVKGAHVNAVNQNGCTPL-HYAASKNRHEIAV----MLLEGGANPDAKDHYDATAMHRAAAKGNLKM 154 (231)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred CHHH----HHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 5554 34444455544332 222233 3334556555433 3334454433211 1122333345555543
Q ss_pred HHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 227 AFVLLRRMVDDGQSVLY---STYAHVMGALLRLGYYAQAVKFVM 267 (324)
Q Consensus 227 a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~ 267 (324)
+.. +.+.|..++. .-.+ .+...+..|+.+-+.-+++
T Consensus 155 v~~----Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 155 VHI----LLFYKASTNIQDTEGNT-PLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp HHH----HHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHHH
T ss_pred HHH----HHhcCCCccccCCCCCC-HHHHHHHCCCHHHHHHHHH
Confidence 333 3334444332 1112 3344455666655554443
No 326
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.05 E-value=22 Score=25.71 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=7.3
Q ss_pred HhcCCCHHHHHHHH
Q 038109 45 AGHERDLETVRYLL 58 (324)
Q Consensus 45 ~~~~~~~~~a~~~~ 58 (324)
.+..|+.+....++
T Consensus 12 A~~~g~~~~v~~ll 25 (201)
T 3hra_A 12 AANQRDTKKVKEIL 25 (201)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHH
Confidence 34455655555554
No 327
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=48.06 E-value=37 Score=23.33 Aligned_cols=41 Identities=5% Similarity=-0.070 Sum_probs=16.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038109 180 LTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACR 220 (324)
Q Consensus 180 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 220 (324)
+..+...+..-.|.++++.+.+.+...+..|..--+..+..
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33333333344444444444444443343333333333333
No 328
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=47.68 E-value=83 Score=23.31 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=21.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 038109 115 KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTR 150 (324)
Q Consensus 115 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 150 (324)
+..+.+.|+-.+-+|.+.| .|....-..++-+.-.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 3467788888888888877 5554444444444333
No 329
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=47.25 E-value=54 Score=26.18 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 159 GLMEVMKEIRVSPDL---TAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGAD---ARTYDALVLGACRAGRVEEAFVLLR 232 (324)
Q Consensus 159 ~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~ 232 (324)
.+.+.+.+.|..++. .-.+. +...+..|..+.+..+++. .|..++ ..-.+.|. ..++.|+.+- .+
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~-L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~i----v~ 290 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKKI----AE 290 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCH-HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHHH----HH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCH-HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHHH----HH
Confidence 344445566654432 22223 3344556666655444321 232222 22222333 2345566543 33
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038109 233 RMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVM 267 (324)
Q Consensus 233 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 267 (324)
.+.+.|..|+..+ .+...++.|+.+-+.-+++
T Consensus 291 ~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 291 LLCKRGASTDCGD---LVMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp HHHTTSCSSTTCC---HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCCCCC---HHHHHHHcCCHHHHHHHHH
Confidence 4455676666554 3344456677665544443
No 330
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=46.95 E-value=15 Score=21.06 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHH-Hhc
Q 038109 225 EEAFVLLRRMVDDGQSVLYSTYAHVMGAL-LRL 256 (324)
Q Consensus 225 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~ 256 (324)
++|.+.|.+|++..-.++.-||...++.+ ++-
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 56777777776553334445677777766 443
No 331
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=46.09 E-value=31 Score=18.85 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHH
Q 038109 292 ERFNEANFILKEMNKRDLKMGFKLRD 317 (324)
Q Consensus 292 g~~~~a~~~~~~m~~~~~~~~~~~~~ 317 (324)
.++..|+++++.+...|-.|+..+..
T Consensus 7 RDv~RaiELle~lq~sgevp~~KL~a 32 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAKLAS 32 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 35667777777777777777666543
No 332
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=46.05 E-value=16 Score=20.87 Aligned_cols=22 Identities=27% Similarity=0.157 Sum_probs=12.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC
Q 038109 116 LKKIDEALRVVDIMAEGGFGLS 137 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~~g~~~~ 137 (324)
.|+.+.|+..+-.|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4566666666666655554443
No 333
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.02 E-value=46 Score=23.06 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=41.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038109 197 KKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259 (324)
Q Consensus 197 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 259 (324)
+.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3556677776543 334455555556 668889999988777667777766677777777754
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=45.66 E-value=71 Score=22.61 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=47.3
Q ss_pred HHHHHHH-HHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChh
Q 038109 120 DEALRVV-DIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEI--RVSPDLTAYNYLLTAYCFKGNLT 190 (324)
Q Consensus 120 ~~a~~~~-~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~ 190 (324)
+.+++-+ +.+.+.|+.++.. -..++..+...+.+-.|.++++.+.+. +...+..|.-.-++.+...|-..
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3444434 3455678876654 455667777777888899999999877 65666666666677777777544
No 335
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=45.65 E-value=48 Score=19.99 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=41.2
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 038109 127 DIMAEGGFGLSAITFHPILSVLTRGK-RMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL 189 (324)
Q Consensus 127 ~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 189 (324)
+.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-.
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34667787766544 44556666554 5667778888888776656667776777777776643
No 336
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=44.51 E-value=93 Score=22.98 Aligned_cols=41 Identities=17% Similarity=0.019 Sum_probs=27.4
Q ss_pred HHHHHHH---ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038109 108 TLIGRLC---KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVL 148 (324)
Q Consensus 108 ~li~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 148 (324)
-+|+++. +..+.+.|+-.+-+|.+.|-.|....-..++-+.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455554 4478999999999999988776655444444443
No 337
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=44.20 E-value=24 Score=24.22 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=11.1
Q ss_pred HHHHhcCCCHHHHHHHHHH
Q 038109 42 VNAAGHERDLETVRYLLNK 60 (324)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~ 60 (324)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3445556666666666554
No 338
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=43.91 E-value=18 Score=20.67 Aligned_cols=23 Identities=0% Similarity=-0.013 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHhCCCchhHH
Q 038109 292 ERFNEANFILKEMNKRDLKMGFK 314 (324)
Q Consensus 292 g~~~~a~~~~~~m~~~~~~~~~~ 314 (324)
-+++.|...|.++...|-.|..+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 45666666666666555555443
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.06 E-value=1.1e+02 Score=28.96 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=29.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038109 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRM 234 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 234 (324)
++..+...|.++-|.++..-+ +.+...--.+..+|...|++++|.+.|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555566665554432221 123333344667777888888888888764
No 340
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=41.68 E-value=99 Score=22.46 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=26.0
Q ss_pred CCcCHhHHHH--HHHHHhCcCCHHHHHHHHHHHHhCCC
Q 038109 274 IKLDTELFGS--LGSKLIGLERFNEANFILKEMNKRDL 309 (324)
Q Consensus 274 ~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~~~~ 309 (324)
..|...+|-. ....|...|-.++...+|..++..+.
T Consensus 202 ~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 202 HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 4566666643 34566778999999999998876653
No 341
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.66 E-value=96 Score=22.31 Aligned_cols=80 Identities=10% Similarity=-0.093 Sum_probs=33.7
Q ss_pred CChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 038109 136 LSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALV 215 (324)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 215 (324)
++..+-...+.++.+.++.+.. ..+..+.. .++..+-...+.+..+.++.+ +...+..+... ++...-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHH
Confidence 3444444555555555543322 22222222 234444444555555555432 22223333222 3444444445
Q ss_pred HHHHhcCC
Q 038109 216 LGACRAGR 223 (324)
Q Consensus 216 ~~~~~~g~ 223 (324)
.++.+.|.
T Consensus 160 ~aL~~~~~ 167 (201)
T 3ltj_A 160 DALGEIGG 167 (201)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCc
Confidence 55555544
No 342
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.21 E-value=69 Score=26.70 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=6.8
Q ss_pred HHhcCCHHHHHHHH
Q 038109 253 LLRLGYYAQAVKFV 266 (324)
Q Consensus 253 ~~~~g~~~~a~~~~ 266 (324)
.+..|+.+-+..++
T Consensus 252 A~~~g~~~~v~~Ll 265 (437)
T 1n11_A 252 AAQEGHAEMVALLL 265 (437)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHH
Confidence 34555555444443
No 343
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=40.92 E-value=99 Score=22.27 Aligned_cols=50 Identities=2% Similarity=0.037 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 038109 155 EEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205 (324)
Q Consensus 155 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 205 (324)
+.+..+++.+.+.|...|...-...+....+.|.+ ....+-.++...|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 44556666667776665555555556555554433 234455566666664
No 344
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.99 E-value=71 Score=20.29 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 038109 224 VEEAFVLLRRMVD 236 (324)
Q Consensus 224 ~~~a~~~~~~m~~ 236 (324)
.+.|.++++.+.+
T Consensus 53 ~~~ar~Lld~L~~ 65 (97)
T 3ygs_P 53 RDQARQLIIDLET 65 (97)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 345
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=38.90 E-value=2.6e+02 Score=26.44 Aligned_cols=156 Identities=10% Similarity=-0.063 Sum_probs=87.9
Q ss_pred HHHHHHHHccCc---HHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 038109 142 HPILSVLTRGKR---MEEAWGLMEVMKEIR----VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214 (324)
Q Consensus 142 ~~li~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 214 (324)
..++...|+.|. .+.|.+.|+.....+ ++||.. ..+...-.+.|.-++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 345666777765 457777888766532 556543 22333344567766666777777665 345556778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcC-CHHHHHHHHHH----hCCCCCCcCHhHHHHHHHHH
Q 038109 215 VLGACRAGRVEEAFVLLRRMVDDG-QSVLYSTYAHVMGALLRLG-YYAQAVKFVMV----CGGRDIKLDTELFGSLGSKL 288 (324)
Q Consensus 215 i~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~ 288 (324)
+.+++...+.+...++++...... +++... .. ++.+..... ..+.|.+++.. +.+. +......+..++...
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~-~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~-~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDA-TS-TINSIASNVIGQPLAWDFVQSNWKKLFQD-YGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGH-HH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTS-SSSCCCCHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhH-HH-HHHHHhcChHHHHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHH
Confidence 888888888888888888776543 444332 22 344444332 23556665533 2221 223344566677666
Q ss_pred hCcCCHHHHHHHHHHHH
Q 038109 289 IGLERFNEANFILKEMN 305 (324)
Q Consensus 289 ~~~g~~~~a~~~~~~m~ 305 (324)
...-.-++-.+-+++..
T Consensus 842 ~~~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFK 858 (909)
T ss_dssp HTTCCSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 55433333344444443
No 346
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.22 E-value=1.1e+02 Score=21.82 Aligned_cols=60 Identities=5% Similarity=-0.157 Sum_probs=39.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHH-HH-----HccCcHHHHHHHHHHHHh
Q 038109 106 YDTLIGRLCKLKKIDEALRVVDIMAEGGFGL--SAITFHPILS-VL-----TRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~-~~-----~~~~~~~~a~~~~~~m~~ 166 (324)
|..-+..|-. |++=+|.++++..-.....+ ....|..||+ .. .+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444444 88888888888888765555 4556666666 22 346778888877776544
No 347
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=37.61 E-value=68 Score=23.67 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=6.6
Q ss_pred hhhhhHHHHHHHHH
Q 038109 81 NSLSVLSDLCRTLA 94 (324)
Q Consensus 81 ~~~~~~~~a~~~~~ 94 (324)
++.|+.+.+..+++
T Consensus 11 ~~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 11 AKENDVQALSKLLK 24 (232)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHcCCHHHHHHHHH
Confidence 44455554444443
No 348
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=37.40 E-value=60 Score=22.40 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=5.7
Q ss_pred HhcCCHHHHHHHH
Q 038109 254 LRLGYYAQAVKFV 266 (324)
Q Consensus 254 ~~~g~~~~a~~~~ 266 (324)
+..|+.+-+..++
T Consensus 116 ~~~~~~~~v~~Ll 128 (165)
T 3twr_A 116 AAKGKYEICKLLL 128 (165)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445544444433
No 349
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=37.12 E-value=66 Score=28.27 Aligned_cols=86 Identities=10% Similarity=0.009 Sum_probs=40.3
Q ss_pred HHHHHHHHHH--ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038109 105 AYDTLIGRLC--KLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTA 182 (324)
Q Consensus 105 ~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 182 (324)
-|..-|..+. ...+.......+.++..+=..-+..-..-++..|.+.|-.+.|.++++.+-..-+. +...| .-+..
T Consensus 481 LW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~ 558 (570)
T 3f3f_C 481 LWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIAN 558 (570)
T ss_dssp THHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------
T ss_pred chhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHH
Confidence 3444444444 33455666677777766422224455677888888888888898888887766443 44455 55567
Q ss_pred HHhcCChhhH
Q 038109 183 YCFKGNLTAT 192 (324)
Q Consensus 183 ~~~~~~~~~a 192 (324)
|.++|+++.+
T Consensus 559 f~rA~~~~~V 568 (570)
T 3f3f_C 559 FSRAGKYELV 568 (570)
T ss_dssp ----------
T ss_pred HHHcCChhhc
Confidence 7888887765
No 350
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=37.09 E-value=47 Score=22.79 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038109 210 TYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYA 260 (324)
Q Consensus 210 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 260 (324)
.-..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 15 qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 15 QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345566777777777889999999988877778788777888888888543
No 351
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=36.73 E-value=1.2e+02 Score=21.83 Aligned_cols=28 Identities=4% Similarity=0.125 Sum_probs=14.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 038109 110 IGRLCKLKKIDEALRVVDIMAEGGFGLS 137 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~m~~~g~~~~ 137 (324)
+...+..|+.+.-.++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3344445555544555555666665544
No 352
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.72 E-value=76 Score=21.17 Aligned_cols=17 Identities=6% Similarity=0.161 Sum_probs=7.5
Q ss_pred HhcCChhhHHHHHHHHH
Q 038109 184 CFKGNLTATSGVLKKME 200 (324)
Q Consensus 184 ~~~~~~~~a~~~~~~m~ 200 (324)
...++++.|..+...+.
T Consensus 72 l~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 72 LLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34444444444444443
No 353
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.47 E-value=1.1e+02 Score=24.71 Aligned_cols=190 Identities=9% Similarity=0.018 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 038109 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSA---ITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177 (324)
Q Consensus 101 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 177 (324)
.|..-++.| ...+..|+.+-+..+ .+.|..++. .-.+ .+...+..|+.+-+..+ .+.|..++...-.
T Consensus 16 ~d~~g~t~L-~~Aa~~g~~~~v~~L----l~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~ 85 (364)
T 3ljn_A 16 SDDENMEKI-HVAARKGQTDEVRRL----IETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYL----ASVGEVHSLWHGQ 85 (364)
T ss_dssp CCHHHHHHH-HHHHHHTCHHHHHHH----HHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHH----HHHCCCCCCBTTB
T ss_pred cCCCCCCHH-HHHHHcCCHHHHHHH----HHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHH----HHCCCCccccCCC
Confidence 344444444 445566777555544 455655543 2233 34555566776554444 4444434332222
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--------------------HHHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADA--------------------RTYDALVLGACRAG--RVEEAFVLLRRMV 235 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~m~ 235 (324)
+.+...+..|+.+-+..+++.....|..|+. ...+. +...+..| +.+-+..++
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~~~v~~Ll---- 160 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYLEMIKILV---- 160 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGHHHHHHHH----
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchHHHHHHHH----
Confidence 3444556778888888777776665665443 11333 34445556 554444443
Q ss_pred HCCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHhCC-CCCC---cCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCC
Q 038109 236 DDGQSVLY---STYAHVMGALLRLGYYAQAVKFVMVCGG-RDIK---LDTELFGSLGSKLIGLERFNEANFILKEMNKRD 308 (324)
Q Consensus 236 ~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 308 (324)
+.|..++. .-.+ .+...+..|+.+-+..+++.... .+.. .|..-.+. +...+..|+.+-+. .+.+.|
T Consensus 161 ~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~g 234 (364)
T 3ljn_A 161 QLGASPTAKDKADET-PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWEDVAM----RFVEMG 234 (364)
T ss_dssp HHTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHHHHH----HHHTTT
T ss_pred HcCCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHHHHH----HHHHcC
Confidence 33554432 2233 34445677888877777776544 1111 23344444 44455667765443 344555
Q ss_pred Cch
Q 038109 309 LKM 311 (324)
Q Consensus 309 ~~~ 311 (324)
..+
T Consensus 235 ad~ 237 (364)
T 3ljn_A 235 IDV 237 (364)
T ss_dssp CCT
T ss_pred CCC
Confidence 544
No 354
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.25 E-value=1.6e+02 Score=23.56 Aligned_cols=216 Identities=12% Similarity=0.025 Sum_probs=107.9
Q ss_pred CchhhHhhhhchhhhhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038109 69 TANTFNFITNTENSLSVLSDLCRTLARLDKGF-PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSV 147 (324)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 147 (324)
|..-. ..+...+..|+.+.+..+++.=.... .+..-+ +.+...+..|+.+-+. .+.+.|..++...-...+..
T Consensus 17 d~~g~-t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~-t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 17 DDENM-EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTAK----YLASVGEVHSLWHGQKPIHL 90 (364)
T ss_dssp CHHHH-HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBCHHHH
T ss_pred CCCCC-CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC-cHHHHHHHcCCHHHHH----HHHHCCCCccccCCCCHHHH
Confidence 33334 34455577788887777765411111 222222 3444555667775444 44454544444222334555
Q ss_pred HHccCcHHHHHHHHHHHHhCCCCCCH--------------------HHHHHHHHHHHhcC--ChhhHHHHHHHHHHCCCC
Q 038109 148 LTRGKRMEEAWGLMEVMKEIRVSPDL--------------------TAYNYLLTAYCFKG--NLTATSGVLKKMEEEKLG 205 (324)
Q Consensus 148 ~~~~~~~~~a~~~~~~m~~~~~~~~~--------------------~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~ 205 (324)
.+..|+.+-+..+++.....|..++. .-.+.|. ..+..| +.+-+. .+.+.|..
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~v~----~Ll~~ga~ 165 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLEMIK----ILVQLGAS 165 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHHHHH----HHHHHTCC
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHHHHH----HHHHcCCC
Confidence 66778888888887777666766654 1133444 445566 444443 34444555
Q ss_pred CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcC-
Q 038109 206 ADA---RTYDALVLGACRAGRVEEAFVLLRRMVD-DGQSV---LYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLD- 277 (324)
Q Consensus 206 ~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~- 277 (324)
++. .-.+. +...+..|+.+-+..+++.-.. .+..+ +..-.+ .+...+..|+.+-+.-+++ .|..++
T Consensus 166 ~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~gad~~~ 239 (364)
T 3ljn_A 166 PTAKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWEDVAMRFVE----MGIDVNM 239 (364)
T ss_dssp TTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHHHHHHHHT----TTCCTTC
T ss_pred CcccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHHHHHHHHH----cCCCCCC
Confidence 443 22333 4445577887665555543221 01102 222223 3344567788776655544 444433
Q ss_pred --HhHHHHHHHHHhCcCCHHHHHHHHH
Q 038109 278 --TELFGSLGSKLIGLERFNEANFILK 302 (324)
Q Consensus 278 --~~~~~~l~~~~~~~g~~~~a~~~~~ 302 (324)
..-.+. +...++.|+.+-+..+++
T Consensus 240 ~d~~g~tp-L~~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 240 EDNEHTVP-LYLSVRAAMVLLTKELLQ 265 (364)
T ss_dssp CCTTSCCH-HHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCH-HHHHHHhChHHHHHHHHH
Confidence 222222 333445577665555554
No 355
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=35.12 E-value=82 Score=19.66 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038109 222 GRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258 (324)
Q Consensus 222 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 258 (324)
...++|.++++.+...| ...|..++.++...+.
T Consensus 50 t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGY 82 (94)
T ss_dssp SHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCH
Confidence 33444444444443332 1334444444444443
No 356
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.99 E-value=1.4e+02 Score=22.30 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=44.0
Q ss_pred HHHHHHHHH---ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-----hhHHHHHHHHHHCCCC
Q 038109 141 FHPILSVLT---RGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNL-----TATSGVLKKMEEEKLG 205 (324)
Q Consensus 141 ~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~m~~~~~~ 205 (324)
+--+|+++. +..+.+.|+-.+.+|.+.|-.|.-..-..++.+....|.- ..|...++.....|.+
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334455554 4588999999999999999887777777777777666642 3445555555555653
No 357
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=34.85 E-value=2.1e+02 Score=24.25 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=36.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC-----HHHHHHHHHHhCCCCC
Q 038109 220 RAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY-----YAQAVKFVMVCGGRDI 274 (324)
Q Consensus 220 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~ 274 (324)
+.++.+.|+..+.+|.+.|..|....=..+..+....|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 467899999999999998887776555555556655554 2244455555555553
No 358
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.84 E-value=1.3e+02 Score=21.80 Aligned_cols=142 Identities=13% Similarity=-0.080 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038109 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180 (324)
Q Consensus 101 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 180 (324)
++...-...+..+.+.+..+ +...+.++... ++..+-...+.++.+.++.+.. ..+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 55555555566666666532 33333333332 3555555555666665553332 22333322 24555555666
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGY 258 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 258 (324)
.+..+.++.+.. ..+..+.+ .++...-...+.++.+.|..+ +...+..+.+ .++...-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 666666654333 33333332 245555555566666655532 3333333332 2444444455555555554
No 359
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.27 E-value=1.9e+02 Score=23.70 Aligned_cols=26 Identities=0% Similarity=-0.056 Sum_probs=17.0
Q ss_pred hHhhhhchhhhhhHHHHHHHHHHHhc
Q 038109 73 FNFITNTENSLSVLSDLCRTLARLDK 98 (324)
Q Consensus 73 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 98 (324)
...++.=|...|+.++|.+.++++..
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~ 40 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRA 40 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 34556666677777777777777643
No 360
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=34.07 E-value=2e+02 Score=23.90 Aligned_cols=261 Identities=11% Similarity=0.016 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCCCCchhh------HhhhhchhhhhhHHHHHHHHHHHhcCC---C-C-
Q 038109 35 SAYYDDLVNAAGHER-DLETVRYLLNKRARDCCFNTANTF------NFITNTENSLSVLSDLCRTLARLDKGF---P-R- 102 (324)
Q Consensus 35 ~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~---p-~- 102 (324)
......+++.+.... ..+.-.++..+..+.. ...-.+| .-++..|...|++.+|.+++..+.+.. . .
T Consensus 58 ~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~ 136 (394)
T 3txn_A 58 AKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKN 136 (394)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch
Confidence 344566777776543 3344344443333211 0111223 257888999999999999888874321 1 1
Q ss_pred --HHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCChhhHHHHHH-----HHH-ccCcHHHHHHHHHHHHhCCCCCC
Q 038109 103 --KSAYDTLIGRLCKLKKIDEALRVVDIMAEG--GFGLSAITFHPILS-----VLT-RGKRMEEAWGLMEVMKEIRVSPD 172 (324)
Q Consensus 103 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~-----~~~-~~~~~~~a~~~~~~m~~~~~~~~ 172 (324)
..+|-.-+..|...+++.++...+...... .+.+++.+- ..+. .+. ..+++..|...|-+..+.--..+
T Consensus 137 ~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~ 215 (394)
T 3txn_A 137 LLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD 215 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc
Confidence 226778889999999999999999887642 222333332 2222 234 67899999888776542100111
Q ss_pred HH----HHHHHHHHHHhcCChhhHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 038109 173 LT----AYNYLLTAYCFKGNLTATSGVLK-KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYA 247 (324)
Q Consensus 173 ~~----~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 247 (324)
.. ..-.++-+..-.++..+...++. .....-..|+...+..++.+| +.+++.+...+++.... .+..|.....
T Consensus 216 ~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~ 293 (394)
T 3txn_A 216 SVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQA 293 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHH
Confidence 11 11111222223344444444332 211111345566666666665 55677777777665432 3444443221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHHHHHHHHhCCC
Q 038109 248 HVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANFILKEMNKRDL 309 (324)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 309 (324)
.+ ..+.+ .=...+ +..+.+ +-...++..+...+.- ..++++..+-+|...|.
T Consensus 294 h~-~~L~~-~Ir~~~---L~~i~~---pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 294 HL-GTLYD-TMLEQN---LCRIIE---PYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HH-HHHHH-HHHHHH---HHHHHT---TCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HH-HHHHH-HHHHHH---HHHHhH---hhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 11 11110 001111 111221 1244666667666643 67899999999987764
No 361
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.82 E-value=91 Score=19.76 Aligned_cols=65 Identities=12% Similarity=-0.051 Sum_probs=42.3
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHHH
Q 038109 229 VLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEANF 299 (324)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 299 (324)
.++..+.+.|+ .+..-...+ .+.....+.++|.++++.+...|. ..|..++.++...|...-|..
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I-~~~~~~t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDI-QRAGSGSRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHH-HTSTTCCHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHH-HhccCCChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHHH
Confidence 36667777775 333333222 221112578999999999998874 478899999988777655543
No 362
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.78 E-value=67 Score=21.67 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038109 212 DALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYY 259 (324)
Q Consensus 212 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 259 (324)
..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 345666666777788999999998887667777777778888877754
No 363
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.83 E-value=1.1e+02 Score=20.48 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=7.9
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 038109 218 ACRAGRVEEAFVLLRRMV 235 (324)
Q Consensus 218 ~~~~g~~~~a~~~~~~m~ 235 (324)
+...++++.|.++...+.
T Consensus 71 al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 334444444444444443
No 364
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.68 E-value=1.3e+02 Score=21.15 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 038109 154 MEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLG 205 (324)
Q Consensus 154 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 205 (324)
.+.+..+++.+.+.|...|...-...+....+.| .....+-.++...|+.
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 3455566666666666555554455555555433 2344555666666664
No 365
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=32.01 E-value=3.3e+02 Score=25.69 Aligned_cols=147 Identities=7% Similarity=-0.077 Sum_probs=83.8
Q ss_pred HHHHHHHHHccCCH---HHHHHHHHHHHhCC----CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038109 106 YDTLIGRLCKLKKI---DEALRVVDIMAEGG----FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNY 178 (324)
Q Consensus 106 ~~~li~~~~~~~~~---~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 178 (324)
-..++...|..|.. +.|.+.|+.....+ ++||. -..+...-.+.|..++-..+++...... +..--..
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ 763 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADK 763 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHH
Confidence 34567777877764 56778888776542 44553 3334444456677777677777777753 4445567
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHH
Q 038109 179 LLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAG-RVEEAFVLLRRMVD---DGQSVLYSTYAHVMGALL 254 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~ 254 (324)
++.+++...+.....++++.....+......... ++.+...+. ..+.|++.++.=-+ .........+..++...+
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 8888888888888888887766543222222222 333333332 23445555543111 122233345667777766
Q ss_pred hcCC
Q 038109 255 RLGY 258 (324)
Q Consensus 255 ~~g~ 258 (324)
..-.
T Consensus 843 ~~~~ 846 (909)
T 4fke_A 843 RRFS 846 (909)
T ss_dssp TTCC
T ss_pred HhcC
Confidence 5443
No 366
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=31.47 E-value=71 Score=24.51 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHhcC----CC-----CHHHHHHHHHHHHccC---------CHHHHHHHHHHHHhCCCC-CChhhHHHHH
Q 038109 85 VLSDLCRTLARLDKG----FP-----RKSAYDTLIGRLCKLK---------KIDEALRVVDIMAEGGFG-LSAITFHPIL 145 (324)
Q Consensus 85 ~~~~a~~~~~~~~~~----~p-----~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~g~~-~~~~~~~~li 145 (324)
..+.|..++..|... +| ...-|..+..+|.+.| +.+.-.++++...+.|++ .-+..|+++|
T Consensus 169 ~vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSII 248 (275)
T 3m6y_A 169 PIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSII 248 (275)
T ss_dssp EHHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGB
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceec
Confidence 478899999998422 23 4567889999999887 556677777888888765 2346677777
Q ss_pred HHHHccCcHHHHHHHHHHHHh
Q 038109 146 SVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~m~~ 166 (324)
+--.-.-+++++.+++..+++
T Consensus 249 Dk~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 249 DKETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp CTTTCCBCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 654445567888877777665
No 367
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.22 E-value=78 Score=23.86 Aligned_cols=16 Identities=0% Similarity=-0.159 Sum_probs=8.5
Q ss_pred HHHhcCCHHHHHHHHH
Q 038109 252 ALLRLGYYAQAVKFVM 267 (324)
Q Consensus 252 ~~~~~g~~~~a~~~~~ 267 (324)
..+..|+.+-+..+++
T Consensus 142 ~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 142 LAACTKQWDVVTYLLE 157 (256)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3345566665555544
No 368
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=31.18 E-value=2.4e+02 Score=24.82 Aligned_cols=75 Identities=11% Similarity=-0.003 Sum_probs=33.2
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038109 187 GNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAV 263 (324)
Q Consensus 187 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 263 (324)
.+.+.......++...=+--+..-...++..|.+.|-.+.|.++++.+-..-+ -+...+ ..+..|++.|+++.+.
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHHHHHHHcCChhhcc
Confidence 34445555566655543333566677778888888888888888887754432 222344 5566677888776543
No 369
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.72 E-value=1.4e+02 Score=21.13 Aligned_cols=52 Identities=8% Similarity=0.048 Sum_probs=34.5
Q ss_pred hcCChhhHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 038109 185 FKGNLTATSGVLKKMEEEKLGA--DARTYDALVL-G-----ACRAGRVEEAFVLLRRMVD 236 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 236 (324)
..|++-+|-++|+..=.....+ ....|..||. . ..+.|+...|..++++...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888776654444 4555666666 2 2356888888888777654
No 370
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.31 E-value=51 Score=24.96 Aligned_cols=117 Identities=10% Similarity=-0.046 Sum_probs=61.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHcc---CcHHHHHHHHHHHHhCCCC--------
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEGGFGLSA-------ITFHPILSVLTRG---KRMEEAWGLMEVMKEIRVS-------- 170 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~-------- 170 (324)
.+...+..|+.+.+..+++.+.+.|..++. .-.+.|..+ +.. |+.+-+..+++.-...+..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 344556778888777788777776655443 333444443 444 7777776666654443211
Q ss_pred --CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH---------------HHHHHHHHHhcCCHHHHHHHH
Q 038109 171 --PDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART---------------YDALVLGACRAGRVEEAFVLL 231 (324)
Q Consensus 171 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---------------~~~li~~~~~~g~~~~a~~~~ 231 (324)
.|..-.+.|. ..+..|+.+-+. .+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 84 ~~~d~~g~t~L~-~A~~~g~~~~v~----~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 156 (256)
T 2etb_A 84 TDEFYQGHSALH-IAIEKRSLQCVK----LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156 (256)
T ss_dssp CSTTTTTCCHHH-HHHHTTCHHHHH----HHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred ccccccCCCHHH-HHHHcCCHHHHH----HHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 1122333444 345567665444 4445565544321 123344455667765544444
No 371
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=29.89 E-value=2.4e+02 Score=23.49 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=49.4
Q ss_pred HHHHHHHHccCc---HHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 038109 142 HPILSVLTRGKR---MEEAWGLMEVMKEIR----VSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214 (324)
Q Consensus 142 ~~li~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 214 (324)
..++...|..|+ .+.|.+.|+.....+ ++||.... +. +.+ .+.-++-..+++..... .+..--..+
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy-~~~-~~~~~~~~~l~~~y~~s---~~~~ek~~l 273 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA--VF-AVG-AQSTEGWDFLYSKYQFS---LSSTEKSQI 273 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH--HH-HHH-TTSHHHHHHHHHHHHHC---CCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee--EE-eee-eCCHHHHHHHHHHHhcC---CCHHHHHHH
Confidence 345556666665 456667777665432 45554321 11 111 11233334444444443 355556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 038109 215 VLGACRAGRVEEAFVLLRRMVDDG 238 (324)
Q Consensus 215 i~~~~~~g~~~~a~~~~~~m~~~~ 238 (324)
+.+++...+.+...++++......
T Consensus 274 l~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 274 EFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCC
Confidence 777777777777777777766554
No 372
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=28.91 E-value=1.7e+02 Score=23.16 Aligned_cols=147 Identities=12% Similarity=0.027 Sum_probs=71.0
Q ss_pred HHHccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhc
Q 038109 147 VLTRGKRMEEAWGLMEVMKEIRVSPD---LTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADART--YDALVLGACRA 221 (324)
Q Consensus 147 ~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~ 221 (324)
..++.|+.+-+..+++ +.|..++ ....+.+..+.. .+.......+.+.+.+.|..++... -.+.+...+..
T Consensus 174 ~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~-~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~ 249 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 249 (337)
T ss_dssp HHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHH-HSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHH-HcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence 3455677665544443 2344333 222233333332 2333344455556677776654321 12234455677
Q ss_pred CCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCcCHhHHHHHHHHHhCcCCHHHHH
Q 038109 222 GRVEEAFVLLRRMVDDGQSVL---YSTYAHVMGALLRLGYYAQAVKFVMVCGGRDIKLDTELFGSLGSKLIGLERFNEAN 298 (324)
Q Consensus 222 g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 298 (324)
|..+.+..+++. .|..++ ..-.+.|. ..++.|+.+-+.-+ .+.|..++..+ .+...++.|+.+
T Consensus 250 ~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~iv~~L----l~~GAd~n~~~---~L~~A~~~~~~~--- 315 (337)
T 4g8k_A 250 KHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKKIAELL----CKRGASTDCGD---LVMTARRNYDHS--- 315 (337)
T ss_dssp TCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHHHHHHH----HTTSCSSTTCC---HHHHHHHTTCHH---
T ss_pred hhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHHHHHHH----HHCCCCCCCCC---HHHHHHHcCCHH---
Confidence 887766655432 233222 22222333 34567877655444 45666666554 233344556654
Q ss_pred HHHHHHHhCCCchh
Q 038109 299 FILKEMNKRDLKMG 312 (324)
Q Consensus 299 ~~~~~m~~~~~~~~ 312 (324)
+.+-+.+.|-.|+
T Consensus 316 -iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 316 -LVKVLLSHGAKED 328 (337)
T ss_dssp -HHHHHHHTTCCC-
T ss_pred -HHHHHHHCcCCCC
Confidence 3444566665554
No 373
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.62 E-value=2.7e+02 Score=23.58 Aligned_cols=55 Identities=9% Similarity=-0.040 Sum_probs=36.5
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 038109 185 FKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR-----VEEAFVLLRRMVDDGQ 239 (324)
Q Consensus 185 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~ 239 (324)
+.++.+.|+.++.+|.+.|..|....-..++.+.-.-|. ...|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 457899999999999999887766666666666655554 2234445555545554
No 374
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.16 E-value=72 Score=21.66 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=8.6
Q ss_pred HHHccCCHHHHHHHHHH
Q 038109 112 RLCKLKKIDEALRVVDI 128 (324)
Q Consensus 112 ~~~~~~~~~~a~~~~~~ 128 (324)
..+..|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34445555555555544
No 375
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.12 E-value=2e+02 Score=23.78 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=11.7
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 038109 250 MGALLRLGYYAQAVKFVMV 268 (324)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~ 268 (324)
+...+..|+.+-+..+++.
T Consensus 282 L~~A~~~~~~~~~~~Ll~~ 300 (437)
T 1n11_A 282 LHLVAQEGHVPVADVLIKH 300 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3444567777766666654
No 376
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=28.05 E-value=1.1e+02 Score=21.16 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHH-CCCCc---CHHHHHHHHHHHHhcCCHHHHH
Q 038109 224 VEEAFVLLRRMVD-DGQSV---LYSTYAHVMGALLRLGYYAQAV 263 (324)
Q Consensus 224 ~~~a~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~ 263 (324)
++.++++.+...+ .|..| ++.++.-++....+.|-++...
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~~ 97 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMS 97 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCHH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcHH
Confidence 4555555555443 25543 2556667777777777665553
No 377
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=27.75 E-value=2.7e+02 Score=23.25 Aligned_cols=155 Identities=14% Similarity=0.023 Sum_probs=87.4
Q ss_pred HHHHHHHHHHccCC---HHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 038109 105 AYDTLIGRLCKLKK---IDEALRVVDIMAEGG----FGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYN 177 (324)
Q Consensus 105 ~~~~li~~~~~~~~---~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 177 (324)
....++...|..|+ .+.|.+.|+.....+ ++||.. ..+...-.+ ..++-..+++..... .+..--.
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr--~~Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~ 271 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVT--LAVFAVGAQ--STEGWDFLYSKYQFS---LSSTEKS 271 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGH--HHHHHHHTT--SHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcc--eeEEeeeeC--CHHHHHHHHHHHhcC---CCHHHHH
Confidence 44567778888886 567888888877543 455533 222222222 234445566666664 3555677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH----HHHCCCCcCHHHHHHHHHH
Q 038109 178 YLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRA-GRVEEAFVLLRR----MVDDGQSVLYSTYAHVMGA 252 (324)
Q Consensus 178 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~----m~~~~~~p~~~~~~~li~~ 252 (324)
.++.+++...+.....++++......+.+...... ++.+.+.+ --.+.|++.+++ +.+. ..++...+..++.+
T Consensus 272 ~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~ 349 (419)
T 3rjo_A 272 QIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMG 349 (419)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHH
Confidence 88999988999999999998887655322333333 33344433 234556666543 2221 12333566667766
Q ss_pred HHhc----CCHHHHHHHHHH
Q 038109 253 LLRL----GYYAQAVKFVMV 268 (324)
Q Consensus 253 ~~~~----g~~~~a~~~~~~ 268 (324)
.... .+.++...+++.
T Consensus 350 ~~~~~~t~~~l~e~~~Ff~~ 369 (419)
T 3rjo_A 350 TTNQFSTRTRLEEVKGFFSS 369 (419)
T ss_dssp TTTTCCSHHHHHHHHHHHHT
T ss_pred HhhcCCCHHHHHHHHHHHHh
Confidence 5443 234445555543
No 378
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=27.47 E-value=71 Score=24.20 Aligned_cols=82 Identities=13% Similarity=0.312 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhcC----CC-----CHHHHHHHHHHHHccC---------CHHHHHHHHHHHHhCCCC-CChhhHHHHH
Q 038109 85 VLSDLCRTLARLDKG----FP-----RKSAYDTLIGRLCKLK---------KIDEALRVVDIMAEGGFG-LSAITFHPIL 145 (324)
Q Consensus 85 ~~~~a~~~~~~~~~~----~p-----~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~g~~-~~~~~~~~li 145 (324)
..+.|..++..|... +| ...-|..+..+|.+.| +.+.-.++++...+.|++ .-+..|+++|
T Consensus 146 ~vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssII 225 (249)
T 3m0z_A 146 PLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSII 225 (249)
T ss_dssp EHHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGB
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceec
Confidence 378899999888422 23 4567888999999887 456667777777777754 2345677777
Q ss_pred HHHHccCcHHHHHHHHHHHHh
Q 038109 146 SVLTRGKRMEEAWGLMEVMKE 166 (324)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~m~~ 166 (324)
+--.-.-+++++.+++..+++
T Consensus 226 Dk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 226 DKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp CTTTCCBCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 654445567888888777664
No 379
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.05 E-value=99 Score=18.06 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=9.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCC
Q 038109 179 LLTAYCFKGNLTATSGVLKKMEEEK 203 (324)
Q Consensus 179 li~~~~~~~~~~~a~~~~~~m~~~~ 203 (324)
++..++...-.+++...+++..+.|
T Consensus 8 ll~l~Aed~AieDaiy~L~~aL~~g 32 (65)
T 2f6m_A 8 LYNLVAQDYALTDTIEALSRMLHRG 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333344444444444433
No 380
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.02 E-value=3.2e+02 Score=23.85 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHccCcHHHHHHHHHHHHhCCC-CCCH--HHH-HHHHHHHHhcCChhhHHHHHHHHHHC
Q 038109 138 AITFHPILSVLTRGKRMEEAWGLMEVMKEIRV-SPDL--TAY-NYLLTAYCFKGNLTATSGVLKKMEEE 202 (324)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~-~~li~~~~~~~~~~~a~~~~~~m~~~ 202 (324)
...++.+++.|...+.++.|..+.....---. .++. .+| -.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45677888888888888888888887642100 0111 222 23345566778888888888776654
No 381
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=26.61 E-value=1.7e+02 Score=21.20 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=6.6
Q ss_pred HHhcCCHHHHHHHH
Q 038109 253 LLRLGYYAQAVKFV 266 (324)
Q Consensus 253 ~~~~g~~~~a~~~~ 266 (324)
.+..|+.+-+..++
T Consensus 147 A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 147 AASVGSLKLIELLC 160 (228)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 34455555444433
No 382
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=26.55 E-value=1e+02 Score=20.74 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=31.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 038109 141 FHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAYCFKGNLTATSGV 195 (324)
Q Consensus 141 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 195 (324)
|--.|...+.+++.+-|+++++-..+.| +...|.+++..|...=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4445566666666666666666666655 455566666666655555555543
No 383
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=25.35 E-value=1.8e+02 Score=23.46 Aligned_cols=41 Identities=5% Similarity=-0.034 Sum_probs=20.4
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038109 198 KMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238 (324)
Q Consensus 198 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 238 (324)
.+.+.|+.|...++..++..+.+.=.++.+.++++.+...|
T Consensus 234 hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g 274 (345)
T 2qfz_A 234 HLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP 274 (345)
T ss_dssp HHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred HHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence 33444454444455555555554444555555555555444
No 384
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.15 E-value=1.9e+02 Score=20.64 Aligned_cols=111 Identities=11% Similarity=-0.100 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038109 101 PRKSAYDTLIGRLCKLKKIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180 (324)
Q Consensus 101 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 180 (324)
++...-...+.++.+.+..+.. ..+.++... ++..+-...+.++.+.++.+... .+..+.. .++..+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~-~~L~~~l~~---~~~~vr~~a~~~L~~~~~~~~~~-~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAV-EPLIKALKD---EDAWVRRAAADALGQIGDERAVE-PLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGHH-HHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHH-HHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHH-HHHHHHc---CCCHHHHHHHH
Confidence 4444444455555555543222 222222221 34444444444555444433222 2222222 23444445555
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR 223 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 223 (324)
.+..+.++.+....+. .+.. .++...-...+.++.+.++
T Consensus 98 ~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 98 VALGQIGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCC
Confidence 5555555433222222 2222 1344444444444444444
No 385
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=24.76 E-value=4.4e+02 Score=24.80 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=76.1
Q ss_pred HHHHHHHHccCc---HHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 038109 142 HPILSVLTRGKR---MEEAWGLMEVMKEI----RVSPDLTAYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDAL 214 (324)
Q Consensus 142 ~~li~~~~~~~~---~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 214 (324)
..++...|+.|. .+.|.+.|+..... .++||.... +-+.+- |.-++-..+++...+. .+..--..+
T Consensus 684 ~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~---vy~~~~-g~~~~~~~l~~~y~~~---~~~~ek~~l 756 (897)
T 2xdt_A 684 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA---VFAVGA-QSTEGWDFLYSKYQFS---LSSTEKSQI 756 (897)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHH---HHHHHT-TSHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhh---EEEEec-CCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 345556666665 46677777776554 244444321 111111 5544444455555443 245556778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhc-CCHHHHHHHHH----HhCCCCCCcCHhHHHHHHHHH
Q 038109 215 VLGACRAGRVEEAFVLLRRMVDD-GQSVLYSTYAHVMGALLRL-GYYAQAVKFVM----VCGGRDIKLDTELFGSLGSKL 288 (324)
Q Consensus 215 i~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~ 288 (324)
+.+++...+.....++++..... .+++.. .. .++.+.+.. ...+.|.+++. .+.+. +.++..++..++...
T Consensus 757 l~aL~c~~~~~~l~~~L~~~~~~~~i~~qd-~~-~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~i~~~ 833 (897)
T 2xdt_A 757 EFALCRTQNKEKLQWLLDESFKGDKIKTQE-FP-QILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGT 833 (897)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSSSCGGG-HH-HHHHHHHTSTTTHHHHHHHHHHTHHHHHHH-HCTTCHHHHHHHHHT
T ss_pred HHHhccCCCHHHHHHHHHHHhCCCCCcHHH-HH-HHHHHHHcChhhHHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHH
Confidence 88888888888888888877753 343332 22 233343322 23344555442 22111 112233455566654
Q ss_pred hCc----CCHHHHHHHHHH
Q 038109 289 IGL----ERFNEANFILKE 303 (324)
Q Consensus 289 ~~~----g~~~~a~~~~~~ 303 (324)
... .+.++..+.|+.
T Consensus 834 ~~~~~t~~~~~~~~~f~~~ 852 (897)
T 2xdt_A 834 TNQFSTRTRLEEVKGFFSS 852 (897)
T ss_dssp TTTCCSHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHh
Confidence 432 334444444444
No 386
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.09 E-value=2e+02 Score=20.44 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCcCHHH
Q 038109 175 AYNYLLTAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLGACRAGR--VEEAFVLLRRMVDDGQSVLYST 245 (324)
Q Consensus 175 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~ 245 (324)
....++.-|...++.++|...++++...... ......+|..-...++ -+.+-.++..+.. ++-+....
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~--~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i 81 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMK--SGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDV 81 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGG--GHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHH
Confidence 4567888899999999999999998743222 2222333333333332 2345677777744 55443333
No 387
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=23.76 E-value=1e+02 Score=20.67 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038109 211 YDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQAVKF 265 (324)
Q Consensus 211 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 265 (324)
|--.|...+.+++.+-|.++++-..+.| +...|.+.+-.|...=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3445566666777777777777766654 445666666666666666666553
No 388
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.28 E-value=1e+02 Score=19.54 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=10.1
Q ss_pred HHHHHHHHhCcCCHHHHHHHH
Q 038109 281 FGSLGSKLIGLERFNEANFIL 301 (324)
Q Consensus 281 ~~~l~~~~~~~g~~~~a~~~~ 301 (324)
+..-.+.+.+.|++++|++..
T Consensus 18 ~~RrAe~ll~~gkydeAIech 38 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCH 38 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHH
Confidence 333444455555555554433
No 389
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.48 E-value=2e+02 Score=20.08 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC
Q 038109 118 KIDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSP 171 (324)
Q Consensus 118 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 171 (324)
..+.+..+++.+.+.|..-|..--...+....+.| .....+-.++.+.|+.+
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 44566677777777777644443344555554433 23446677777888754
No 390
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.33 E-value=3e+02 Score=21.96 Aligned_cols=143 Identities=13% Similarity=0.144 Sum_probs=85.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCC-----CCCChhhHHH---HHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038109 109 LIGRLCKLKKIDEALRVVDIMAEGG-----FGLSAITFHP---ILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLL 180 (324)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~m~~~g-----~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 180 (324)
++..+.-.-+-++|..+|..+...- ..|+...... .+..+.+.-+ -++++.+.+.|+.|...++.-++
T Consensus 155 i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l 230 (331)
T 3qye_A 155 VAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFL 230 (331)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHH
Confidence 3333333346778999998887542 2233322211 1222222222 35778888999999989999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 038109 181 TAYCFKGNLTATSGVLKKMEEEKLGADARTYDALVLG----ACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL 256 (324)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 256 (324)
..+.+.=.++.+.++|+.+...|...-....-+++.. ..+..+.++..++++..... .+......+++-....
T Consensus 231 ~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~l 307 (331)
T 3qye_A 231 TMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFEM 307 (331)
T ss_dssp STTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHC
T ss_pred HHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhC
Confidence 9998888899999999999887754222222223322 22345788888887764321 2334455566554444
Q ss_pred CC
Q 038109 257 GY 258 (324)
Q Consensus 257 g~ 258 (324)
.-
T Consensus 308 ~~ 309 (331)
T 3qye_A 308 DI 309 (331)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 391
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=21.71 E-value=2.3e+02 Score=20.41 Aligned_cols=18 Identities=22% Similarity=0.065 Sum_probs=9.7
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 038109 251 GALLRLGYYAQAVKFVMV 268 (324)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~ 268 (324)
...+..|+.+-+..+++.
T Consensus 163 ~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 163 FLAAREGSYETAKVLLDH 180 (223)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334556666655555544
No 392
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=21.21 E-value=2.8e+02 Score=21.13 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHhC
Q 038109 209 RTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRL-GYYAQAVKFVMVCG 270 (324)
Q Consensus 209 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~ 270 (324)
.....++....+.++++++.+.++.+.+.+...+..--+.|-.+|-.. |....+++++..+.
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissie 68 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 68 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344455666778899999999999888777677777666565565432 44455666665543
No 393
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.15 E-value=1.7e+02 Score=18.73 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=11.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038109 159 GLMEVMKEIRVSPDLTAYNYLLTAYCF 185 (324)
Q Consensus 159 ~~~~~m~~~~~~~~~~~~~~li~~~~~ 185 (324)
++.+++..-|+.|+..+..-++..|..
T Consensus 30 ~L~eEfdefGi~~~d~VldKc~ELC~~ 56 (101)
T 2keb_A 30 QLAEELQIFGLDCEEALIEKLVELCVQ 56 (101)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 394
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=20.64 E-value=2.2e+02 Score=19.78 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHH
Q 038109 16 SVLVTRSFTKSGAFPDEPTSAYYDDLVNAAGHE-RDLETVRYLLNKRA 62 (324)
Q Consensus 16 a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~ 62 (324)
...+++.|..... ....+..-+..++..+... .....+..+|..+-
T Consensus 20 i~~l~~~fd~~d~-~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D 66 (183)
T 1s6c_A 20 LQVLYRGFKNEXP-SGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFD 66 (183)
T ss_dssp HHHHHHHHHHHCT-TSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC-CCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhC
Confidence 3344455544321 2234444455555544433 23444455555443
No 395
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=20.58 E-value=1.2e+02 Score=22.20 Aligned_cols=19 Identities=5% Similarity=0.174 Sum_probs=10.3
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 038109 110 IGRLCKLKKIDEALRVVDI 128 (324)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~ 128 (324)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhc
Confidence 3444556666655555543
No 396
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.39 E-value=1.4e+02 Score=17.48 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=9.2
Q ss_pred cCCHHHHHHHHHHHHh
Q 038109 116 LKKIDEALRVVDIMAE 131 (324)
Q Consensus 116 ~~~~~~a~~~~~~m~~ 131 (324)
.|+++.|++.+-.|..
T Consensus 45 ~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 45 SGAVDATIDQLLQMNL 60 (67)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCC
Confidence 4566666666555554
No 397
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=20.27 E-value=2.4e+02 Score=22.68 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=33.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038109 195 VLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDG 238 (324)
Q Consensus 195 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 238 (324)
+++.+.+.|+.|...++..++..+.+.=.++.+.++++.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 45566677888877788888887877777888888888877766
No 398
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.16 E-value=2.9e+02 Score=20.98 Aligned_cols=217 Identities=10% Similarity=-0.012 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCchhhHhhhhchhhhhh----HHHHHHHHHHHhcCCCCHHHHHH
Q 038109 33 PTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTENSLSV----LSDLCRTLARLDKGFPRKSAYDT 108 (324)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~p~~~~~~~ 108 (324)
++...=...+.++.+.+.. .+...+..+... ++...-...+.++...+. ......++.......++..+-..
T Consensus 35 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~ 110 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ-DAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRAT 110 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH-HHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCc-hHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHH
Confidence 4544444555556665543 344444444442 344333333444444332 33333444322122356666566
Q ss_pred HHHHHHccCC-----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038109 109 LIGRLCKLKK-----IDEALRVVDIMAEGGFGLSAITFHPILSVLTRGKRMEEAWGLMEVMKEIRVSPDLTAYNYLLTAY 183 (324)
Q Consensus 109 li~~~~~~~~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 183 (324)
.+.++.+.+. ...+...+..+... ++..+-...+.++...++.+ +...+..+.+ .++..+-...+.+.
T Consensus 111 a~~aL~~l~~~~~~~~~~~~~~L~~~l~d---~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 183 (280)
T 1oyz_A 111 AIESTAQRCKKNPIYSPKIVEQSQITAFD---KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAI 183 (280)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTTC---SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhhC---CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 6666666542 34555555555443 57777777788888887744 3444444444 35666666666776
Q ss_pred HhcC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 038109 184 CFKG-NLTATSGVLKKMEEEKLGADARTYDALVLGACRAGRVEEAFVLLRRMVDDGQSVLYSTYAHVMGALLRLGYYAQA 262 (324)
Q Consensus 184 ~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 262 (324)
...+ ....+...+..+.+. ++..+-...+.++.+.|+..-.-.+.. +.+. |+ .-...+.++.+.|.. .+
T Consensus 184 ~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~~~~~~~~L~~-~l~d---~~--vr~~a~~aL~~i~~~-~~ 253 (280)
T 1oyz_A 184 NINKYDNSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRKDKRVLSVLCD-ELKK---NT--VYDDIIEAAGELGDK-TL 253 (280)
T ss_dssp HHHTCCCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHTTCGGGHHHHHH-HHTS---SS--CCHHHHHHHHHHCCG-GG
T ss_pred HhhccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCHhhHHHHHH-HhcC---cc--HHHHHHHHHHhcCch-hh
Confidence 6665 234455555555443 577777777888888886544433444 3332 22 223345566666653 34
Q ss_pred HHHHHHhC
Q 038109 263 VKFVMVCG 270 (324)
Q Consensus 263 ~~~~~~~~ 270 (324)
...+..+.
T Consensus 254 ~~~L~~~l 261 (280)
T 1oyz_A 254 LPVLDTML 261 (280)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 44444433
Done!