Query 038110
Match_columns 667
No_of_seqs 453 out of 3384
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.7E-73 1.9E-77 640.0 43.8 626 2-663 1-732 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.2E-43 1.6E-47 417.3 37.3 409 158-583 183-714 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.6E-34 1E-38 293.2 13.4 224 164-388 1-284 (287)
4 KOG0472 Leucine-rich repeat pr 99.6 1.2E-16 2.5E-21 158.6 0.1 210 442-660 220-540 (565)
5 KOG0444 Cytoskeletal regulator 99.6 1E-16 2.3E-21 166.5 -2.8 202 447-662 52-259 (1255)
6 KOG0444 Cytoskeletal regulator 99.6 2.2E-16 4.8E-21 164.1 -0.7 210 444-659 97-327 (1255)
7 PLN00113 leucine-rich repeat r 99.6 1.5E-14 3.3E-19 173.5 13.6 125 449-582 117-245 (968)
8 PLN00113 leucine-rich repeat r 99.5 6.5E-14 1.4E-18 168.0 12.0 201 447-660 161-368 (968)
9 KOG0617 Ras suppressor protein 99.5 3.6E-15 7.8E-20 131.6 -2.1 164 465-642 26-192 (264)
10 PLN03210 Resistant to P. syrin 99.4 6.1E-12 1.3E-16 151.8 16.1 79 449-530 633-713 (1153)
11 KOG0472 Leucine-rich repeat pr 99.3 1E-14 2.3E-19 144.9 -9.8 202 447-659 88-308 (565)
12 KOG4194 Membrane glycoprotein 99.3 7.5E-13 1.6E-17 137.5 3.1 195 451-659 150-352 (873)
13 KOG0617 Ras suppressor protein 99.3 5.6E-14 1.2E-18 124.2 -4.5 138 444-584 27-184 (264)
14 KOG4194 Membrane glycoprotein 99.3 2.3E-12 5.1E-17 133.9 5.1 207 449-659 172-403 (873)
15 PRK15370 E3 ubiquitin-protein 99.3 6.2E-11 1.3E-15 134.2 15.5 115 449-582 198-313 (754)
16 PRK15387 E3 ubiquitin-protein 99.3 1.7E-10 3.7E-15 129.9 18.4 190 449-661 241-458 (788)
17 KOG0618 Serine/threonine phosp 99.2 5.1E-12 1.1E-16 138.2 -0.1 207 447-663 238-491 (1081)
18 PRK15370 E3 ubiquitin-protein 99.1 2.2E-10 4.7E-15 129.8 11.3 115 451-584 179-294 (754)
19 KOG4658 Apoptotic ATPase [Sign 99.0 1.2E-09 2.5E-14 125.9 9.1 109 444-561 539-653 (889)
20 KOG0532 Leucine-rich repeat (L 99.0 4.2E-11 9E-16 124.7 -2.7 169 448-630 73-244 (722)
21 PRK15387 E3 ubiquitin-protein 98.9 5.8E-09 1.3E-13 117.8 11.0 171 449-658 221-392 (788)
22 KOG4237 Extracellular matrix p 98.9 4.9E-10 1.1E-14 112.0 1.7 126 447-580 64-195 (498)
23 KOG0618 Serine/threonine phosp 98.9 1.8E-10 3.9E-15 126.4 -2.1 172 449-630 218-417 (1081)
24 KOG0532 Leucine-rich repeat (L 98.8 1.5E-10 3.3E-15 120.5 -5.3 189 454-660 54-246 (722)
25 PF14580 LRR_9: Leucine-rich r 98.8 4.6E-09 9.9E-14 97.4 3.8 127 444-579 13-146 (175)
26 COG4886 Leucine-rich repeat (L 98.7 8.6E-09 1.9E-13 110.8 4.1 175 470-661 114-290 (394)
27 cd00116 LRR_RI Leucine-rich re 98.7 2.3E-08 5.1E-13 104.1 5.9 127 449-583 80-231 (319)
28 PF14580 LRR_9: Leucine-rich r 98.6 3.8E-08 8.3E-13 91.3 5.5 111 459-581 6-121 (175)
29 KOG4237 Extracellular matrix p 98.5 8.5E-09 1.8E-13 103.3 -1.8 84 446-530 87-173 (498)
30 cd00116 LRR_RI Leucine-rich re 98.5 4.6E-08 9.9E-13 101.9 2.8 180 470-660 79-290 (319)
31 KOG1259 Nischarin, modulator o 98.5 3.2E-08 7E-13 95.6 0.9 79 495-581 281-360 (490)
32 COG4886 Leucine-rich repeat (L 98.5 8.4E-08 1.8E-12 103.2 3.9 171 448-630 114-287 (394)
33 KOG1259 Nischarin, modulator o 98.4 2E-08 4.4E-13 97.0 -1.7 131 447-589 281-415 (490)
34 PF13855 LRR_8: Leucine rich r 98.3 4.8E-07 1E-11 68.7 3.3 55 473-529 2-57 (61)
35 PLN03150 hypothetical protein; 98.3 1.9E-06 4.2E-11 97.4 8.9 103 473-584 419-526 (623)
36 PF13855 LRR_8: Leucine rich r 98.2 7.6E-07 1.6E-11 67.6 2.9 59 498-562 1-61 (61)
37 TIGR03015 pepcterm_ATPase puta 98.2 0.0001 2.2E-09 74.7 18.2 168 176-346 53-266 (269)
38 KOG3207 Beta-tubulin folding c 98.1 2.6E-07 5.5E-12 94.1 -1.7 84 447-530 118-206 (505)
39 PLN03150 hypothetical protein; 98.1 6.7E-06 1.4E-10 93.1 9.3 102 451-561 419-526 (623)
40 KOG0531 Protein phosphatase 1, 98.0 7.4E-07 1.6E-11 96.2 -2.3 193 450-661 72-268 (414)
41 PRK15386 type III secretion pr 97.9 2.7E-05 5.9E-10 81.2 7.4 58 471-536 51-111 (426)
42 PRK04841 transcriptional regul 97.8 0.00018 3.9E-09 86.2 14.8 186 177-368 43-277 (903)
43 KOG3665 ZYG-1-like serine/thre 97.8 7.9E-06 1.7E-10 92.3 1.7 126 449-581 121-258 (699)
44 PF12799 LRR_4: Leucine Rich r 97.8 2E-05 4.3E-10 55.0 3.1 32 499-530 2-33 (44)
45 PF05729 NACHT: NACHT domain 97.8 0.0001 2.3E-09 68.4 9.0 131 176-310 10-160 (166)
46 KOG3207 Beta-tubulin folding c 97.7 5.8E-06 1.2E-10 84.5 -0.7 182 469-661 118-314 (505)
47 PRK15386 type III secretion pr 97.7 0.00014 3.1E-09 75.9 9.0 113 448-581 50-185 (426)
48 PRK00411 cdc6 cell division co 97.6 0.0022 4.8E-08 68.9 17.2 204 158-362 29-302 (394)
49 PF12799 LRR_4: Leucine Rich r 97.6 8.8E-05 1.9E-09 51.7 3.8 41 472-515 1-41 (44)
50 KOG4579 Leucine-rich repeat (L 97.5 9.2E-06 2E-10 70.1 -1.8 90 470-568 51-141 (177)
51 KOG1859 Leucine-rich repeat pr 97.5 6.2E-06 1.3E-10 89.1 -5.0 122 502-659 168-290 (1096)
52 PF01637 Arch_ATPase: Archaeal 97.4 0.00047 1E-08 68.0 8.2 161 161-325 1-232 (234)
53 KOG0531 Protein phosphatase 1, 97.4 2.9E-05 6.3E-10 83.8 -1.2 173 470-662 70-246 (414)
54 KOG3665 ZYG-1-like serine/thre 97.4 5.6E-05 1.2E-09 85.5 0.9 34 546-580 169-202 (699)
55 KOG4579 Leucine-rich repeat (L 97.3 2.3E-05 5.1E-10 67.6 -2.4 99 474-580 29-130 (177)
56 KOG1859 Leucine-rich repeat pr 97.1 9.1E-06 2E-10 87.9 -8.0 125 448-584 162-290 (1096)
57 KOG2982 Uncharacterized conser 97.1 0.00011 2.4E-09 71.6 -0.5 104 451-561 46-157 (418)
58 cd01128 rho_factor Transcripti 97.1 0.00084 1.8E-08 66.5 5.5 80 176-256 26-115 (249)
59 TIGR00635 ruvB Holliday juncti 96.9 0.16 3.6E-06 52.3 21.7 188 159-360 4-242 (305)
60 PRK09376 rho transcription ter 96.9 0.0019 4.2E-08 67.0 7.0 80 176-256 179-268 (416)
61 KOG1909 Ran GTPase-activating 96.9 0.00041 8.8E-09 69.4 1.7 213 447-660 27-282 (382)
62 KOG1644 U2-associated snRNP A' 96.9 0.0016 3.4E-08 60.5 5.0 104 451-559 43-149 (233)
63 KOG1909 Ran GTPase-activating 96.8 0.0006 1.3E-08 68.3 2.0 181 469-659 27-252 (382)
64 TIGR02928 orc1/cdc6 family rep 96.8 0.058 1.3E-06 57.2 17.0 152 159-310 15-209 (365)
65 PRK00080 ruvB Holliday junctio 96.7 0.43 9.4E-06 49.7 23.1 160 157-329 23-224 (328)
66 PRK06893 DNA replication initi 96.7 0.0054 1.2E-07 60.3 8.0 142 176-346 49-207 (229)
67 PRK05564 DNA polymerase III su 96.6 0.027 5.8E-07 58.4 13.1 151 160-325 5-188 (313)
68 PF00560 LRR_1: Leucine Rich R 96.5 0.00096 2.1E-08 38.8 0.7 22 499-520 1-22 (22)
69 PF13173 AAA_14: AAA domain 96.4 0.006 1.3E-07 54.0 5.4 110 176-305 12-127 (128)
70 KOG2120 SCF ubiquitin ligase, 96.3 0.00018 3.8E-09 70.3 -4.9 40 617-660 335-375 (419)
71 KOG2120 SCF ubiquitin ligase, 96.3 0.00022 4.7E-09 69.7 -4.7 160 472-661 185-351 (419)
72 TIGR00767 rho transcription te 96.1 0.02 4.3E-07 59.9 8.2 80 176-256 178-267 (415)
73 KOG1644 U2-associated snRNP A' 96.1 0.0094 2E-07 55.4 5.1 103 470-581 40-148 (233)
74 COG2909 MalT ATP-dependent tra 95.9 0.27 5.9E-06 55.6 16.5 188 178-368 49-283 (894)
75 KOG2739 Leucine-rich acidic nu 95.9 0.0041 8.9E-08 60.2 2.1 80 448-530 41-125 (260)
76 TIGR02903 spore_lon_C ATP-depe 95.6 0.12 2.6E-06 58.5 12.4 152 159-311 154-364 (615)
77 COG5238 RNA1 Ran GTPase-activa 95.5 0.013 2.7E-07 57.0 3.7 213 448-660 28-284 (388)
78 KOG2982 Uncharacterized conser 95.5 0.0058 1.3E-07 60.0 1.3 81 493-583 66-156 (418)
79 PF13401 AAA_22: AAA domain; P 95.5 0.031 6.6E-07 49.4 6.0 104 176-281 14-125 (131)
80 COG2256 MGS1 ATPase related to 95.4 0.1 2.3E-06 53.8 10.0 120 177-321 59-184 (436)
81 PF05659 RPW8: Arabidopsis bro 95.4 0.11 2.4E-06 46.8 9.0 105 3-114 8-113 (147)
82 KOG2739 Leucine-rich acidic nu 95.3 0.0081 1.8E-07 58.2 1.5 103 470-584 41-154 (260)
83 PF12061 DUF3542: Protein of u 94.9 0.073 1.6E-06 52.7 7.0 103 5-112 297-401 (402)
84 PF13504 LRR_7: Leucine rich r 94.6 0.021 4.5E-07 30.8 1.3 17 498-514 1-17 (17)
85 PF00560 LRR_1: Leucine Rich R 94.4 0.011 2.4E-07 34.2 0.1 20 551-570 1-20 (22)
86 KOG2123 Uncharacterized conser 94.2 0.0036 7.7E-08 60.9 -3.7 79 473-561 20-99 (388)
87 PRK13342 recombination factor 93.9 0.62 1.3E-05 50.3 12.1 66 243-311 91-162 (413)
88 PF13504 LRR_7: Leucine rich r 93.8 0.036 7.9E-07 29.8 1.2 17 550-566 1-17 (17)
89 KOG2123 Uncharacterized conser 93.4 0.0039 8.5E-08 60.6 -5.1 78 449-530 18-97 (388)
90 PRK07003 DNA polymerase III su 93.4 0.95 2.1E-05 51.4 12.5 84 243-326 118-220 (830)
91 PRK14961 DNA polymerase III su 93.3 1.6 3.6E-05 46.1 13.9 68 243-310 118-188 (363)
92 PRK06645 DNA polymerase III su 93.2 1.3 2.9E-05 48.6 13.3 68 243-310 127-197 (507)
93 PRK14949 DNA polymerase III su 93.1 0.74 1.6E-05 53.3 11.4 83 243-325 118-218 (944)
94 PRK12323 DNA polymerase III su 93.0 0.72 1.6E-05 51.6 10.8 85 243-327 123-225 (700)
95 TIGR03420 DnaA_homol_Hda DnaA 92.6 0.29 6.2E-06 47.9 6.6 141 177-345 49-204 (226)
96 PRK12402 replication factor C 92.6 1.5 3.3E-05 45.7 12.5 67 244-310 125-194 (337)
97 cd00009 AAA The AAA+ (ATPases 92.5 0.58 1.3E-05 41.6 8.0 94 177-283 30-131 (151)
98 TIGR00678 holB DNA polymerase 92.4 1.5 3.2E-05 41.5 11.1 68 243-310 95-165 (188)
99 TIGR01242 26Sp45 26S proteasom 92.4 1.3 2.9E-05 46.9 11.7 146 156-321 119-328 (364)
100 PF13306 LRR_5: Leucine rich r 92.2 0.31 6.7E-06 42.7 5.7 62 470-535 33-95 (129)
101 COG5238 RNA1 Ran GTPase-activa 92.1 0.32 6.9E-06 47.6 5.8 184 470-659 28-253 (388)
102 PRK14960 DNA polymerase III su 91.9 1.5 3.3E-05 49.2 11.5 83 243-325 117-217 (702)
103 PRK04195 replication factor C 91.8 1.9 4E-05 47.6 12.4 148 157-325 12-200 (482)
104 PTZ00112 origin recognition co 91.7 10 0.00022 44.1 17.8 150 158-310 754-946 (1164)
105 PRK14963 DNA polymerase III su 91.6 0.25 5.3E-06 54.5 5.2 155 158-322 13-212 (504)
106 TIGR02397 dnaX_nterm DNA polym 91.3 4.3 9.3E-05 42.7 14.2 68 243-310 116-186 (355)
107 PRK08727 hypothetical protein; 91.3 1.1 2.5E-05 44.0 9.1 128 177-332 52-192 (233)
108 PRK00440 rfc replication facto 91.3 3.3 7.3E-05 42.7 13.2 137 158-310 16-171 (319)
109 smart00370 LRR Leucine-rich re 91.2 0.17 3.7E-06 30.5 2.0 22 497-518 1-22 (26)
110 smart00369 LRR_TYP Leucine-ric 91.2 0.17 3.7E-06 30.5 2.0 22 497-518 1-22 (26)
111 smart00369 LRR_TYP Leucine-ric 91.0 0.14 3E-06 30.9 1.5 21 549-569 1-21 (26)
112 smart00370 LRR Leucine-rich re 91.0 0.14 3E-06 30.9 1.5 21 549-569 1-21 (26)
113 COG1474 CDC6 Cdc6-related prot 90.6 1.9 4E-05 45.5 10.4 95 161-256 19-135 (366)
114 PRK14957 DNA polymerase III su 90.6 2.6 5.7E-05 46.7 11.9 68 243-310 118-188 (546)
115 PRK14962 DNA polymerase III su 90.5 6.1 0.00013 43.2 14.6 88 243-330 116-222 (472)
116 KOG0473 Leucine-rich repeat pr 90.4 0.01 2.2E-07 56.3 -5.9 78 450-530 42-120 (326)
117 PLN03025 replication factor C 90.2 3.3 7.1E-05 43.0 11.8 139 158-310 12-168 (319)
118 KOG2543 Origin recognition com 90.2 1.2 2.7E-05 45.9 8.1 145 161-310 8-190 (438)
119 PRK14951 DNA polymerase III su 90.1 3.5 7.5E-05 46.5 12.4 81 243-323 123-221 (618)
120 PF14516 AAA_35: AAA-like doma 90.0 17 0.00036 37.9 16.9 172 161-334 13-246 (331)
121 PF13306 LRR_5: Leucine rich r 89.9 0.57 1.2E-05 41.0 5.1 99 470-580 10-110 (129)
122 PRK07994 DNA polymerase III su 89.3 2.5 5.4E-05 47.8 10.6 82 243-324 118-217 (647)
123 PRK07471 DNA polymerase III su 89.1 1.2 2.6E-05 46.9 7.5 85 243-327 140-238 (365)
124 PHA02544 44 clamp loader, smal 89.0 6.4 0.00014 40.7 13.0 155 157-332 19-197 (316)
125 PRK05896 DNA polymerase III su 88.6 3.9 8.4E-05 45.7 11.3 67 244-310 119-188 (605)
126 PRK14956 DNA polymerase III su 88.4 3.5 7.6E-05 44.7 10.5 79 243-321 120-216 (484)
127 PF13191 AAA_16: AAA ATPase do 88.2 0.87 1.9E-05 42.7 5.4 33 161-193 2-51 (185)
128 COG1373 Predicted ATPase (AAA+ 88.2 8.4 0.00018 41.2 13.3 133 244-380 94-246 (398)
129 PRK14958 DNA polymerase III su 88.1 3.9 8.6E-05 45.2 11.0 137 157-309 14-187 (509)
130 PRK07764 DNA polymerase III su 87.5 6.4 0.00014 46.1 12.7 79 243-321 119-215 (824)
131 PRK07940 DNA polymerase III su 87.5 8.5 0.00018 41.1 12.7 85 243-327 116-213 (394)
132 KOG2028 ATPase related to the 87.3 2.9 6.3E-05 42.9 8.4 117 177-314 173-295 (554)
133 PTZ00202 tuzin; Provisional 87.1 4.4 9.5E-05 43.2 9.9 144 156-309 259-430 (550)
134 PRK03992 proteasome-activating 86.5 4.2 9E-05 43.5 9.9 134 157-310 129-312 (389)
135 PRK08691 DNA polymerase III su 86.4 4.9 0.00011 45.6 10.5 82 243-324 118-217 (709)
136 PRK08116 hypothetical protein; 86.3 0.96 2.1E-05 45.5 4.6 93 176-282 124-221 (268)
137 KOG2227 Pre-initiation complex 86.2 6.5 0.00014 41.9 10.6 156 155-310 146-335 (529)
138 PRK08084 DNA replication initi 85.8 4.5 9.7E-05 39.9 9.0 142 177-346 56-213 (235)
139 PRK14964 DNA polymerase III su 85.7 8.2 0.00018 42.3 11.6 68 243-310 115-185 (491)
140 PRK14959 DNA polymerase III su 85.5 8.4 0.00018 43.4 11.8 89 243-331 118-225 (624)
141 TIGR02880 cbbX_cfxQ probable R 85.3 3.9 8.4E-05 41.6 8.5 127 176-317 68-212 (284)
142 PRK13341 recombination factor 85.2 3.6 7.8E-05 47.4 9.0 66 243-311 108-179 (725)
143 PRK04132 replication factor C 84.9 16 0.00034 42.8 14.0 127 180-321 580-725 (846)
144 PRK14971 DNA polymerase III su 84.9 15 0.00033 41.6 13.7 81 243-323 120-218 (614)
145 PF00308 Bac_DnaA: Bacterial d 84.7 4.1 8.9E-05 39.6 8.1 154 176-346 44-212 (219)
146 PRK09112 DNA polymerase III su 84.1 15 0.00032 38.6 12.4 167 158-327 22-240 (351)
147 PRK09111 DNA polymerase III su 83.8 11 0.00023 42.6 11.8 83 243-325 131-231 (598)
148 PRK14087 dnaA chromosomal repl 83.3 7.3 0.00016 42.4 10.1 124 178-314 153-289 (450)
149 TIGR03689 pup_AAA proteasome A 83.0 8.8 0.00019 42.3 10.4 147 154-312 177-377 (512)
150 KOG0473 Leucine-rich repeat pr 82.9 0.053 1.1E-06 51.6 -5.6 83 470-562 40-123 (326)
151 PRK14970 DNA polymerase III su 82.6 21 0.00045 37.8 13.1 68 243-310 107-177 (367)
152 PRK14954 DNA polymerase III su 82.6 16 0.00034 41.5 12.5 79 243-321 126-222 (620)
153 PRK05642 DNA replication initi 82.5 7 0.00015 38.4 8.8 142 177-346 56-212 (234)
154 PRK14955 DNA polymerase III su 82.5 8.4 0.00018 41.3 10.1 80 243-322 126-223 (397)
155 PRK14950 DNA polymerase III su 81.9 25 0.00055 39.8 14.1 162 158-325 15-219 (585)
156 PRK07133 DNA polymerase III su 81.9 18 0.00039 41.5 12.7 80 243-322 117-214 (725)
157 COG3899 Predicted ATPase [Gene 81.3 14 0.00031 43.7 12.1 88 290-377 209-330 (849)
158 PRK05707 DNA polymerase III su 81.2 17 0.00037 37.7 11.4 84 244-327 106-203 (328)
159 PF05621 TniB: Bacterial TniB 81.2 14 0.00031 37.4 10.4 80 177-256 72-157 (302)
160 PRK14969 DNA polymerase III su 80.6 15 0.00033 40.9 11.5 68 243-310 118-188 (527)
161 KOG4341 F-box protein containi 80.3 0.11 2.4E-06 53.8 -4.9 110 548-661 318-439 (483)
162 PRK08451 DNA polymerase III su 80.1 31 0.00066 38.4 13.4 80 243-322 116-213 (535)
163 PRK14952 DNA polymerase III su 79.6 24 0.00051 39.8 12.5 79 243-321 117-213 (584)
164 cd01133 F1-ATPase_beta F1 ATP 79.3 9.2 0.0002 38.4 8.3 79 176-256 79-175 (274)
165 PRK11331 5-methylcytosine-spec 79.2 5.6 0.00012 42.8 7.1 95 160-256 176-284 (459)
166 PRK14965 DNA polymerase III su 79.2 26 0.00057 39.5 12.9 85 243-327 118-221 (576)
167 PRK12608 transcription termina 78.3 11 0.00024 39.5 8.9 78 178-256 145-232 (380)
168 smart00364 LRR_BAC Leucine-ric 77.3 1.5 3.3E-05 26.4 1.3 18 498-515 2-19 (26)
169 PRK06647 DNA polymerase III su 75.2 49 0.0011 37.2 13.5 68 243-310 118-188 (563)
170 PRK14953 DNA polymerase III su 75.2 57 0.0012 35.9 13.8 68 243-310 118-188 (486)
171 PRK14086 dnaA chromosomal repl 75.0 24 0.00052 39.7 10.8 151 178-345 326-491 (617)
172 CHL00181 cbbX CbbX; Provisiona 73.8 11 0.00025 38.2 7.5 119 177-310 70-206 (287)
173 TIGR02639 ClpA ATP-dependent C 73.0 28 0.0006 40.7 11.4 138 156-310 179-355 (731)
174 PTZ00454 26S protease regulato 72.7 31 0.00068 36.9 10.8 68 243-310 237-326 (398)
175 PRK06305 DNA polymerase III su 72.4 46 0.001 36.3 12.2 68 243-310 120-190 (451)
176 PRK08903 DnaA regulatory inact 71.9 13 0.00029 36.2 7.3 99 246-346 92-203 (227)
177 COG1222 RPT1 ATP-dependent 26S 71.6 1.1E+02 0.0024 31.9 13.5 159 154-332 146-372 (406)
178 COG3903 Predicted ATPase [Gene 71.1 3.6 7.8E-05 43.1 3.1 157 174-339 22-201 (414)
179 PRK14948 DNA polymerase III su 71.0 84 0.0018 35.8 14.2 83 243-325 120-220 (620)
180 TIGR00362 DnaA chromosomal rep 71.0 25 0.00054 37.8 9.8 120 178-312 148-280 (405)
181 PRK08118 topology modulation p 70.8 1.1 2.3E-05 41.7 -0.7 27 175-201 10-37 (167)
182 PRK07399 DNA polymerase III su 70.4 95 0.0021 32.0 13.4 84 243-326 123-220 (314)
183 PTZ00361 26 proteosome regulat 69.6 24 0.00052 38.2 9.1 39 272-310 322-364 (438)
184 CHL00095 clpC Clp protease ATP 68.7 61 0.0013 38.5 13.1 139 158-310 178-351 (821)
185 PRK05563 DNA polymerase III su 67.8 96 0.0021 34.9 13.7 68 243-310 118-188 (559)
186 smart00365 LRR_SD22 Leucine-ri 67.0 4.4 9.6E-05 24.5 1.7 17 497-513 1-17 (26)
187 smart00382 AAA ATPases associa 66.9 14 0.0003 32.0 5.9 81 176-259 12-93 (148)
188 PRK09087 hypothetical protein; 66.5 25 0.00054 34.3 7.9 61 247-310 90-163 (226)
189 PRK14088 dnaA chromosomal repl 66.4 48 0.001 36.0 10.8 119 177-310 141-273 (440)
190 PF04665 Pox_A32: Poxvirus A32 66.2 11 0.00024 37.1 5.2 27 176-204 23-49 (241)
191 PRK12422 chromosomal replicati 65.6 40 0.00086 36.7 9.9 135 178-331 153-300 (445)
192 TIGR03345 VI_ClpV1 type VI sec 63.8 74 0.0016 37.9 12.3 134 156-310 184-360 (852)
193 PRK11034 clpA ATP-dependent Cl 63.5 27 0.00059 40.7 8.5 141 156-310 183-359 (758)
194 PRK00149 dnaA chromosomal repl 63.0 36 0.00078 37.2 9.2 116 178-310 160-290 (450)
195 PF05496 RuvB_N: Holliday junc 62.1 1.1E+02 0.0024 29.8 11.0 53 273-326 151-220 (233)
196 PF13177 DNA_pol3_delta2: DNA 61.1 31 0.00068 31.6 7.1 59 243-301 101-162 (162)
197 PF15237 PTRF_SDPR: PTRF/SDPR 59.6 1.7E+02 0.0036 28.5 11.4 106 3-126 4-110 (246)
198 PRK08058 DNA polymerase III su 59.5 1.6E+02 0.0035 30.5 12.9 68 243-310 109-179 (329)
199 TIGR03346 chaperone_ClpB ATP-d 58.7 68 0.0015 38.3 11.0 139 157-310 171-346 (852)
200 TIGR02881 spore_V_K stage V sp 58.4 22 0.00047 35.6 6.0 65 246-310 107-188 (261)
201 COG3267 ExeA Type II secretory 57.0 2E+02 0.0042 28.6 11.7 150 175-329 60-247 (269)
202 PRK10865 protein disaggregatio 56.5 98 0.0021 36.9 11.8 36 156-191 175-224 (857)
203 PF13516 LRR_6: Leucine Rich r 54.5 6.3 0.00014 23.0 0.8 15 497-511 1-15 (24)
204 smart00368 LRR_RI Leucine rich 53.2 10 0.00023 23.2 1.7 14 498-511 2-15 (28)
205 KOG1947 Leucine rich repeat pr 53.0 4.9 0.00011 44.0 0.3 14 548-561 241-254 (482)
206 PRK06090 DNA polymerase III su 50.0 3.1E+02 0.0068 28.3 13.0 85 243-327 107-201 (319)
207 PF05673 DUF815: Protein of un 49.8 56 0.0012 32.2 6.9 102 157-285 25-154 (249)
208 smart00367 LRR_CC Leucine-rich 48.6 11 0.00023 22.5 1.2 14 648-661 2-15 (26)
209 TIGR01243 CDC48 AAA family ATP 48.2 1.4E+02 0.0029 35.1 11.2 75 236-310 538-632 (733)
210 KOG0741 AAA+-type ATPase [Post 47.9 1.6E+02 0.0034 32.5 10.3 67 243-310 597-683 (744)
211 TIGR01241 FtsH_fam ATP-depende 47.3 2.2E+02 0.0048 31.5 12.2 39 272-310 193-235 (495)
212 KOG3864 Uncharacterized conser 44.8 5.5 0.00012 37.6 -0.8 34 497-530 150-185 (221)
213 CHL00176 ftsH cell division pr 42.8 2.4E+02 0.0052 32.4 11.6 68 243-310 274-363 (638)
214 PRK08181 transposase; Validate 42.1 22 0.00047 35.8 2.9 63 177-256 117-179 (269)
215 PRK06964 DNA polymerase III su 42.0 71 0.0015 33.4 6.8 85 243-327 131-225 (342)
216 cd01135 V_A-ATPase_B V/A-type 41.9 1.3E+02 0.0027 30.4 8.2 81 176-256 79-178 (276)
217 TIGR01243 CDC48 AAA family ATP 41.3 1.6E+02 0.0034 34.5 10.3 36 156-191 175-237 (733)
218 PRK08939 primosomal protein Dn 41.0 23 0.00049 36.4 2.9 89 176-281 166-260 (306)
219 KOG0728 26S proteasome regulat 40.3 3.7E+02 0.0079 26.6 10.5 41 270-310 284-328 (404)
220 PRK10536 hypothetical protein; 38.7 73 0.0016 31.7 5.9 38 246-284 178-215 (262)
221 PRK06620 hypothetical protein; 38.7 1E+02 0.0022 29.7 7.0 97 246-346 87-193 (214)
222 KOG3864 Uncharacterized conser 38.6 15 0.00033 34.7 1.1 39 618-660 149-188 (221)
223 PRK08769 DNA polymerase III su 37.4 73 0.0016 32.9 6.0 85 243-327 112-208 (319)
224 cd01123 Rad51_DMC1_radA Rad51_ 37.0 91 0.002 30.3 6.5 45 176-221 29-77 (235)
225 TIGR03305 alt_F1F0_F1_bet alte 35.8 1.4E+02 0.0031 32.3 8.0 79 177-256 149-244 (449)
226 TIGR02639 ClpA ATP-dependent C 35.4 95 0.0021 36.3 7.2 86 161-256 456-565 (731)
227 KOG4341 F-box protein containi 34.9 13 0.00029 39.0 0.1 151 495-656 291-460 (483)
228 PTZ00185 ATPase alpha subunit; 34.4 2.1E+02 0.0046 31.7 8.9 80 177-256 200-301 (574)
229 KOG0735 AAA+-type ATPase [Post 33.6 1.1E+02 0.0024 34.9 6.8 62 177-255 442-505 (952)
230 PF10157 DUF2365: Uncharacteri 33.6 3.6E+02 0.0079 24.3 10.8 22 93-114 124-145 (149)
231 COG2607 Predicted ATPase (AAA+ 33.5 1.7E+02 0.0038 28.8 7.2 100 157-282 58-183 (287)
232 PF00006 ATP-synt_ab: ATP synt 33.3 75 0.0016 30.7 5.0 75 177-255 26-116 (215)
233 PRK12597 F0F1 ATP synthase sub 32.4 1.6E+02 0.0036 32.1 7.8 79 177-256 154-249 (461)
234 TIGR01040 V-ATPase_V1_B V-type 31.6 1.8E+02 0.0039 31.6 7.9 80 177-256 152-259 (466)
235 COG2812 DnaX DNA polymerase II 31.5 2.7E+02 0.0058 30.9 9.3 146 158-310 15-188 (515)
236 PRK08972 fliI flagellum-specif 31.4 1.1E+02 0.0023 33.2 6.1 76 177-256 173-264 (444)
237 PRK12377 putative replication 31.4 1.1E+02 0.0024 30.4 5.9 64 177-256 112-175 (248)
238 KOG1947 Leucine rich repeat pr 31.2 37 0.0008 37.0 2.9 12 549-560 294-305 (482)
239 PRK07261 topology modulation p 31.2 90 0.0019 28.8 5.0 28 174-201 8-36 (171)
240 PRK06526 transposase; Provisio 31.0 41 0.00089 33.5 2.9 64 176-256 108-171 (254)
241 PF00004 AAA: ATPase family as 30.9 69 0.0015 27.5 4.1 16 176-191 8-23 (132)
242 COG1579 Zn-ribbon protein, pos 29.7 5.5E+02 0.012 25.2 11.3 58 23-80 54-120 (239)
243 PRK08927 fliI flagellum-specif 29.6 1.6E+02 0.0034 31.9 7.1 76 177-256 169-260 (442)
244 TIGR03345 VI_ClpV1 type VI sec 29.5 95 0.0021 37.0 5.9 46 236-281 660-718 (852)
245 PRK09280 F0F1 ATP synthase sub 29.0 2.4E+02 0.0051 30.8 8.3 79 177-256 155-250 (463)
246 PF12297 EVC2_like: Ellis van 28.3 7.6E+02 0.016 26.4 11.4 87 25-114 285-380 (429)
247 TIGR01041 ATP_syn_B_arch ATP s 27.2 2.3E+02 0.0049 31.0 7.8 80 177-256 152-250 (458)
248 PF06103 DUF948: Bacterial pro 27.0 3.3E+02 0.0073 21.9 7.9 13 62-74 53-65 (90)
249 PF12732 YtxH: YtxH-like prote 27.0 2.3E+02 0.0049 22.0 5.9 25 18-42 23-47 (74)
250 CHL00095 clpC Clp protease ATP 26.8 1.6E+02 0.0034 35.1 7.2 47 236-282 603-662 (821)
251 PF03670 UPF0184: Uncharacteri 26.6 3.4E+02 0.0073 21.8 6.7 36 27-62 25-60 (83)
252 KOG0989 Replication factor C, 26.6 64 0.0014 32.8 3.2 154 157-320 34-223 (346)
253 PF02463 SMC_N: RecF/RecN/SMC 26.4 25 0.00054 34.0 0.4 44 243-286 157-203 (220)
254 PRK04196 V-type ATP synthase s 26.3 2.5E+02 0.0053 30.7 8.0 79 177-256 154-252 (460)
255 PRK11020 hypothetical protein; 26.3 4.1E+02 0.0088 22.6 7.5 50 26-77 3-52 (118)
256 TIGR03346 chaperone_ClpB ATP-d 26.2 1.1E+02 0.0024 36.4 5.9 46 236-281 659-717 (852)
257 KOG2669 Regulator of nuclear m 26.1 2.7E+02 0.0059 28.6 7.6 54 25-79 8-70 (325)
258 PRK06871 DNA polymerase III su 26.1 1.9E+02 0.0041 30.0 6.7 82 243-324 106-200 (325)
259 PRK07952 DNA replication prote 25.6 1.8E+02 0.0039 28.8 6.3 69 177-260 110-180 (244)
260 PRK06921 hypothetical protein; 25.6 1.9E+02 0.0041 29.0 6.6 59 177-253 128-186 (266)
261 cd01393 recA_like RecA is a b 25.5 3.1E+02 0.0068 26.2 8.1 42 176-220 29-76 (226)
262 PRK10865 protein disaggregatio 25.2 1E+02 0.0023 36.7 5.3 80 178-264 610-692 (857)
263 TIGR02237 recomb_radB DNA repa 24.9 2E+02 0.0044 27.2 6.5 37 176-215 22-58 (209)
264 PF10168 Nup88: Nuclear pore c 24.6 9.9E+02 0.021 27.9 12.8 26 23-48 560-585 (717)
265 PF05508 Ran-binding: RanGTP-b 24.3 3.9E+02 0.0084 27.2 8.2 19 96-114 119-137 (302)
266 PRK08149 ATP synthase SpaL; Va 24.0 2.5E+02 0.0053 30.4 7.3 77 176-256 161-253 (428)
267 KOG0736 Peroxisome assembly fa 23.9 9.5E+02 0.021 28.2 11.8 147 154-319 667-877 (953)
268 CHL00195 ycf46 Ycf46; Provisio 23.5 4E+02 0.0088 29.4 9.1 68 243-310 317-402 (489)
269 PRK09361 radB DNA repair and r 23.3 2.2E+02 0.0047 27.4 6.5 35 176-213 33-67 (225)
270 PRK06936 type III secretion sy 23.3 2.5E+02 0.0054 30.5 7.1 76 177-256 173-264 (439)
271 KOG0991 Replication factor C, 22.7 4.9E+02 0.011 25.6 8.1 42 311-352 228-270 (333)
272 COG0542 clpA ATP-binding subun 22.6 4E+02 0.0088 31.1 9.0 203 29-279 402-641 (786)
273 cd01132 F1_ATPase_alpha F1 ATP 22.6 4.8E+02 0.01 26.3 8.6 83 176-262 79-180 (274)
274 COG0593 DnaA ATPase involved i 22.3 81 0.0018 33.7 3.2 119 177-311 124-255 (408)
275 TIGR01039 atpD ATP synthase, F 22.1 3.6E+02 0.0078 29.4 8.1 79 177-256 154-249 (461)
276 TIGR00602 rad24 checkpoint pro 21.9 2.6E+02 0.0056 32.0 7.3 36 156-191 81-135 (637)
277 PRK09183 transposase/IS protei 21.8 99 0.0021 30.9 3.7 64 176-256 112-176 (259)
278 PF05055 DUF677: Protein of un 21.7 4.9E+02 0.011 27.1 8.7 62 24-86 260-321 (336)
279 PF00154 RecA: recA bacterial 21.4 2.6E+02 0.0056 28.9 6.6 73 177-256 64-143 (322)
280 PF01695 IstB_IS21: IstB-like 21.3 32 0.0007 32.1 0.1 89 177-283 58-151 (178)
281 PRK05541 adenylylsulfate kinas 20.7 1.4E+02 0.003 27.5 4.3 25 176-202 17-41 (176)
282 COG3074 Uncharacterized protei 20.2 3.8E+02 0.0083 20.5 5.4 49 26-74 30-78 (79)
283 COG0468 RecA RecA/RadA recombi 20.1 4.9E+02 0.011 26.3 8.1 39 176-216 70-108 (279)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-73 Score=640.00 Aligned_cols=626 Identities=23% Similarity=0.334 Sum_probs=479.4
Q ss_pred cccccchhhHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 038110 2 VKCLAPPTERQF-SYLRSYNNNIENLKAEVGKLKDGTESIQHAVDEAKRKGEEIEKKVEKLLDSGNNAIVEAEKFVGDEA 80 (667)
Q Consensus 2 a~~~~~~v~~~~-~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~l~~~ayd~ed~ld~~~ 80 (667)
|++.++..++++ .++......+.+.++.+..|++.|..++.+++++++++. ....+..|.+.+++++|++||.++.+.
T Consensus 1 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred CCeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777754 466777788999999999999999999999999999874 478899999999999999999998765
Q ss_pred Hhh-----------------hhhccccc-cchHHHhHhhhhHHHHHHHHHHHHHcCCCCeeecCCCCCccccCCCCCCCC
Q 038110 81 AAN-----------------KQCFKGLC-ANLKIRIQHSTEAPRQLEAIVKLREAGRFDRISYRPLPEDIFCDNKNRSSS 142 (667)
Q Consensus 81 ~~~-----------------~~~~~~~~-~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (667)
... +-|+.+.+ .+...-+.+++++-++...++.+..++.|..+.....+.. .+++
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~------~~e~- 152 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPRE------KVET- 152 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchh------hccc-
Confidence 321 11221222 1222233444444444444454444444443322110000 0111
Q ss_pred CCCCccccccccCCCcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhc-cCCCCCEEEEEEeCCC
Q 038110 143 SSFDPQNLTLMSNKDYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAE-NDKLFDQAVFAEVSQS 207 (667)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~-~~~~F~~~~wv~vs~~ 207 (667)
.|...... +|.+..++++++.|.+ ||||||+.|||+.. ++.+||.++||+||+.
T Consensus 153 ----------~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~ 221 (889)
T KOG4658|consen 153 ----------RPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKE 221 (889)
T ss_pred ----------CCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccc
Confidence 11122222 7999999999998865 35999999999998 9999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCh---hHHHH-HHHHHhcCCeEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChh
Q 038110 208 HDIRKIQGEIADKLGLTFHEESE---SGRAS-LCNQLKKNKTILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSED 283 (667)
Q Consensus 208 ~~~~~i~~~i~~~l~~~~~~~~~---~~~~~-l~~~L~~~kr~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~ 283 (667)
|+..+++++|++.++.......+ ...+. |.+.|+ +|||+|||||||+..+|+.++.|+|...+||||++|||++.
T Consensus 222 f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~ 300 (889)
T KOG4658|consen 222 FTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEE 300 (889)
T ss_pred ccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHh
Confidence 99999999999998874433322 23334 999998 89999999999999999999999999999999999999999
Q ss_pred hhhhccCCcceEecCCCCHHHHHHHHH------------------HHHHHHhCCcchHHHHHHHHHccC-ChHHHHHHHH
Q 038110 284 TLSRKMDSKQNFSVGILKEEEAWSGEF------------------KWVAKECAGLPVSIVTVSRALRNK-SLFEWKDALQ 344 (667)
Q Consensus 284 va~~~~~~~~~~~l~~L~~~~s~~Lf~------------------~~i~~~c~GlPLai~~~g~~L~~k-~~~~W~~~l~ 344 (667)
|+..+|++...+++++|+++|||.||+ ++|+++|+|+|||++++|++|+.| +.++|+++.+
T Consensus 301 V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~ 380 (889)
T KOG4658|consen 301 VCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALN 380 (889)
T ss_pred hhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHc
Confidence 986668888999999999999999999 899999999999999999999988 8889999999
Q ss_pred HhcCC------------------CCcCchHHHHHHHHHHhhh---hcccHHHHHHHHhHcCCCCCcccHHHHHHHHHHHH
Q 038110 345 QLRRP------------------ISTNFKDELKQIFLLIGYT---YVAFIDDLIWYSIGLGLFQGIKNMEEARAGVRTLV 403 (667)
Q Consensus 345 ~l~~~------------------~~~~l~~~lk~cfly~s~f---~~i~~~~Li~~Wiaeg~i~~~~~~e~~~~~~~~li 403 (667)
.+.+. +|+++|+++|.||+|||+| |.|+++.||.+||||||+++....+.+++.+.+++
T Consensus 381 ~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i 460 (889)
T KOG4658|consen 381 VLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYI 460 (889)
T ss_pred cccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHH
Confidence 76543 5677899999999999999 99999999999999999988666666778888888
Q ss_pred HHHHHccccccCC--------------cchhhhhcc-----ccccEEEeecccccCcCCCccccccceeEEEEeccCccc
Q 038110 404 NKLKASCMLLDDD--------------ENISISIAS-----REQNVFTATDELVNGWEWSDESRVRHCTSIVILDVKTYV 464 (667)
Q Consensus 404 ~~L~~~~l~~~~~--------------~dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~ 464 (667)
.+|+++||++... .|+|.++++ +++ .++.++ ....+.|....+..+|++++.+|.+..
T Consensus 461 ~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~-~~~~~~~~~~~~~~~rr~s~~~~~~~~ 537 (889)
T KOG4658|consen 461 EELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDG-VGLSEIPQVKSWNSVRRMSLMNNKIEH 537 (889)
T ss_pred HHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc--eEEECC-cCccccccccchhheeEEEEeccchhh
Confidence 8888899998865 178889987 565 233322 112245677778899999999999999
Q ss_pred cCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCC-CCccCCccccCCCcccEEecCC-cccccCCCCccC
Q 038110 465 LPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDM-NLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNAS 542 (667)
Q Consensus 465 l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~-~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~ 542 (667)
++....+++|++|.+.+|...+..++..+|..|++||+|||++| .+.+||++|++|.|||||+|++ .+.+||
T Consensus 538 ~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP------ 611 (889)
T KOG4658|consen 538 IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP------ 611 (889)
T ss_pred ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc------
Confidence 99888899999999999873127889998999999999999988 6889999999999999999999 999999
Q ss_pred hhhhcCCCCCCeEEeecCC-CCCCCCCCcCCCCCCeeEEEecC-ccCCCcccc--cccccceEEeecCccccchH---HH
Q 038110 543 LEELKHFPNLTSLELEVND-ANTLPRGGLFFEKPERYKILTGH-RWSRGFYRS--SNKSYRSFRIDLDANVRLKD---RL 615 (667)
Q Consensus 543 ~~~l~~L~~L~~L~l~~~~-l~~lP~~~~~l~~L~~l~~~~~~-~~~~~~~~~--~~~~l~~l~l~~~~~~~~~~---~~ 615 (667)
.++++|.+|.+|++..+. +..+|.....|++|+.|.+.... ......+.. ....++.+.+..... ...+ ..
T Consensus 612 -~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~ 689 (889)
T KOG4658|consen 612 -SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGM 689 (889)
T ss_pred -hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhh
Confidence 999999999999999986 44454444569999999887543 111111122 122233333322111 1111 11
Q ss_pred HHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCCee
Q 038110 616 VVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGPQF 663 (667)
Q Consensus 616 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~ 663 (667)
..+.+..+.+.+.++ .....+..+ ..+.+|+.|.|.+|...+.
T Consensus 690 ~~L~~~~~~l~~~~~---~~~~~~~~~--~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGC---SKRTLISSL--GSLGNLEELSILDCGISEI 732 (889)
T ss_pred HHHHHHhHhhhhccc---ccceeeccc--ccccCcceEEEEcCCCchh
Confidence 122234445555444 444566677 8899999999999998654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.2e-43 Score=417.35 Aligned_cols=409 Identities=16% Similarity=0.195 Sum_probs=287.1
Q ss_pred cccccchHHHHHHHHHhcC----------------CCCcHHHHHHHHHhccCCCCCEEEEEEe---CCC-----------
Q 038110 158 YEAFESRMSTLNDILGALK----------------NPDTTLAKEVAWKAENDKLFDQAVFAEV---SQS----------- 207 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~----------------~~~TtLa~~vy~~~~~~~~F~~~~wv~v---s~~----------- 207 (667)
..+++|++..++++..+|. .||||||+++|+... .+|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccccc
Confidence 4567899999998887763 367999999999766 77999888742 211
Q ss_pred CC-HHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhhhh
Q 038110 208 HD-IRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDTLS 286 (667)
Q Consensus 208 ~~-~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~va~ 286 (667)
++ ...++++++.++........ .....++++|+ +||+||||||||+..+|+.+.....+.++||+||||||+++++.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~-~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~ 338 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKI-YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLR 338 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCccc-CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHH
Confidence 11 23455666666543321110 11123888898 89999999999999999999887777789999999999999974
Q ss_pred hccCCcceEecCCCCHHHHHHHHH-----------------HHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHhcC-
Q 038110 287 RKMDSKQNFSVGILKEEEAWSGEF-----------------KWVAKECAGLPVSIVTVSRALRNKSLFEWKDALQQLRR- 348 (667)
Q Consensus 287 ~~~~~~~~~~l~~L~~~~s~~Lf~-----------------~~i~~~c~GlPLai~~~g~~L~~k~~~~W~~~l~~l~~- 348 (667)
.++...+|+++.|++++||+||+ ++|+++|+|+|||++++|+.|++++..+|+.+++++.+
T Consensus 339 -~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~ 417 (1153)
T PLN03210 339 -AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNG 417 (1153)
T ss_pred -hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Confidence 46677899999999999999998 77999999999999999999999999999999988764
Q ss_pred ----------CCCcCchH-HHHHHHHHHhhhhcccHHHHHHHHhHcCCCCCcccHHH-----------HHHHHHHHHHHH
Q 038110 349 ----------PISTNFKD-ELKQIFLLIGYTYVAFIDDLIWYSIGLGLFQGIKNMEE-----------ARAGVRTLVNKL 406 (667)
Q Consensus 349 ----------~~~~~l~~-~lk~cfly~s~f~~i~~~~Li~~Wiaeg~i~~~~~~e~-----------~~~~~~~li~~L 406 (667)
.+|+++++ ..|.||+|||+|+.-...+.+..|.|.+.+......+. ....||++++++
T Consensus 418 ~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~ 497 (1153)
T PLN03210 418 LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEM 497 (1153)
T ss_pred ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHH
Confidence 36778865 59999999999932233345777888765543222211 123588888887
Q ss_pred HHccccccC----Cc-------chhh---hhcc--ccccEEE---------ee-cccc---cC-----------------
Q 038110 407 KASCMLLDD----DE-------NISI---SIAS--REQNVFT---------AT-DELV---NG----------------- 440 (667)
Q Consensus 407 ~~~~l~~~~----~~-------dl~~---~~~~--~~~~~~~---------~~-~~~~---~~----------------- 440 (667)
++.-..++. .+ |... .... ....+.. +. +.+. .+
T Consensus 498 ~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~ 577 (1153)
T PLN03210 498 GKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVR 577 (1153)
T ss_pred HHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccce
Confidence 643322211 10 1000 0000 0000000 00 0000 00
Q ss_pred cCCCc--cccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCC-CCccCCccc
Q 038110 441 WEWSD--ESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDM-NLLSLPSSI 517 (667)
Q Consensus 441 ~~~~~--~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~-~i~~lP~si 517 (667)
-.+|. ...+.++|.|.+.++.+..+|....+.+|+.|.+.++.. ..+|.++ ..+++|++|+|+++ .+..+|. +
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l--~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-l 653 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKL--EKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-L 653 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccc--ccccccc-ccCCCCCEEECCCCCCcCcCCc-c
Confidence 00010 012346777888777777777777778888888888765 6677776 78888888888877 4667774 7
Q ss_pred cCCCcccEEecCC--cccccCCCCccChhhhcCCCCCCeEEeecCC-CCCCCCCCcCCCCCCeeEEEec
Q 038110 518 GLLTNLHTLCLYG--GVGVVDGVKNASLEELKHFPNLTSLELEVND-ANTLPRGGLFFEKPERYKILTG 583 (667)
Q Consensus 518 ~~L~~L~~L~L~~--~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~-l~~lP~~~~~l~~L~~l~~~~~ 583 (667)
+.+++|++|+|++ .+..+| ..+++|++|++|++++|. ++.+|.++ ++++|+.|.+..+
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp-------~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELP-------SSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred ccCCcccEEEecCCCCccccc-------hhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 8888888888887 678888 888999999999998874 88888874 6778888876543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.6e-34 Score=293.23 Aligned_cols=224 Identities=25% Similarity=0.385 Sum_probs=175.3
Q ss_pred hHHHHHHHHHhcCC----------------CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 038110 164 RMSTLNDILGALKN----------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHE 227 (667)
Q Consensus 164 r~~~~~~i~~~l~~----------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 227 (667)
||.++++|.++|.. ||||||+.+|++..++.+|+.++||.+++.++...+++.|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 46666666666654 56999999999977789999999999999999999999999999987432
Q ss_pred C----ChhHHHH-HHHHHhcCCeEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhhhhhccCCcceEecCCCCH
Q 038110 228 E----SESGRAS-LCNQLKKNKTILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDTLSRKMDSKQNFSVGILKE 302 (667)
Q Consensus 228 ~----~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~va~~~~~~~~~~~l~~L~~ 302 (667)
. ....... +++.|. ++++||||||||+...|+.+...++....||+||||||+..++.........|++++|++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 2223334 999998 789999999999999999998888888889999999999999743333367999999999
Q ss_pred HHHHHHHH------------------HHHHHHhCCcchHHHHHHHHHccC-ChHHHHHHHHHhcCC--------------
Q 038110 303 EEAWSGEF------------------KWVAKECAGLPVSIVTVSRALRNK-SLFEWKDALQQLRRP-------------- 349 (667)
Q Consensus 303 ~~s~~Lf~------------------~~i~~~c~GlPLai~~~g~~L~~k-~~~~W~~~l~~l~~~-------------- 349 (667)
++|++||. ++|+++|+|+|||++++|++|+.+ +..+|+.+++++.+.
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999 789999999999999999999755 889999999875422
Q ss_pred ---CCcCchHHHHHHHHHHhhh---hcccHHHHHHHHhHcCCCCC
Q 038110 350 ---ISTNFKDELKQIFLLIGYT---YVAFIDDLIWYSIGLGLFQG 388 (667)
Q Consensus 350 ---~~~~l~~~lk~cfly~s~f---~~i~~~~Li~~Wiaeg~i~~ 388 (667)
+|+.+|+++|.||+|||+| +.|+++.|+++|+|+|||+.
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 2455689999999999999 78999999999999999975
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=1.2e-16 Score=158.57 Aligned_cols=210 Identities=17% Similarity=0.164 Sum_probs=151.5
Q ss_pred CCCccccccceeEEEEeccCccccCCCC--CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccC
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPEVM--ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGL 519 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~ 519 (667)
..|.......+..+.+..|.++.+|... .++++.+|++.+|.. .++|+++ +.+++|.+||+|+|.|+.+|.++|+
T Consensus 220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl--ke~Pde~-clLrsL~rLDlSNN~is~Lp~sLgn 296 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL--KEVPDEI-CLLRSLERLDLSNNDISSLPYSLGN 296 (565)
T ss_pred cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc--ccCchHH-HHhhhhhhhcccCCccccCCccccc
Confidence 3455555556666666666666666543 677888888888877 7888887 7888888888888888888888888
Q ss_pred CCcccEEecCC-cccccC--------------------------------------------------------------
Q 038110 520 LTNLHTLCLYG-GVGVVD-------------------------------------------------------------- 536 (667)
Q Consensus 520 L~~L~~L~L~~-~l~~LP-------------------------------------------------------------- 536 (667)
| ||+.|-+.+ .++.+-
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 8 888888766 111110
Q ss_pred ---------------------C-------------------------CCccChhhhcCCCCCCeEEeecCCCCCCCCCCc
Q 038110 537 ---------------------G-------------------------VKNASLEELKHFPNLTSLELEVNDANTLPRGGL 570 (667)
Q Consensus 537 ---------------------~-------------------------~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~ 570 (667)
+ .....+..++.+++|..|++++|-+..+|..++
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~ 455 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMG 455 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhh
Confidence 0 011224566788999999999998999999888
Q ss_pred CCCCCCeeEEEecCccCCCcccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCc
Q 038110 571 FFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQL 650 (667)
Q Consensus 571 ~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L 650 (667)
.+..|+.++++.+....+++.-.....++.+-.+.+.+....+.-..++++|..|+|.+| .+..+|+.+ +++.||
T Consensus 456 ~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN---dlq~IPp~L--gnmtnL 530 (565)
T KOG0472|consen 456 SLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN---DLQQIPPIL--GNMTNL 530 (565)
T ss_pred hhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC---chhhCChhh--ccccce
Confidence 888999999987754445443333333433334434444555554567799999999999 888899999 999999
Q ss_pred cEEEeecCCC
Q 038110 651 KYLQIEGYRG 660 (667)
Q Consensus 651 ~~L~l~~~~~ 660 (667)
++|.|+|||-
T Consensus 531 ~hLeL~gNpf 540 (565)
T KOG0472|consen 531 RHLELDGNPF 540 (565)
T ss_pred eEEEecCCcc
Confidence 9999999985
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=1e-16 Score=166.53 Aligned_cols=202 Identities=15% Similarity=0.208 Sum_probs=165.2
Q ss_pred ccccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHT 525 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~ 525 (667)
..+.++.||++.+|++..+-... .++.||++.+..|......+|+.+ -+|.-|.+||||.|++++.|..+..-.++-.
T Consensus 52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh-cccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 46678999999999887665544 799999999999887657899999 5899999999999999999999999999999
Q ss_pred EecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecC--ccCCCcccccccccceEE
Q 038110 526 LCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGH--RWSRGFYRSSNKSYRSFR 602 (667)
Q Consensus 526 L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~--~~~~~~~~~~~~~l~~l~ 602 (667)
|+|++ +|..+|. .-+-+|+-|-+||+++|.+..+|+.+..|.+|+.|.++.+. .+.+..++.+ .+++.|.
T Consensus 131 LNLS~N~IetIPn------~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm-tsL~vLh 203 (1255)
T KOG0444|consen 131 LNLSYNNIETIPN------SLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM-TSLSVLH 203 (1255)
T ss_pred EEcccCccccCCc------hHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc-hhhhhhh
Confidence 99999 8999994 45678999999999999999999998889999999888665 3344445544 4566777
Q ss_pred eec-Ccccc-chHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCCe
Q 038110 603 IDL-DANVR-LKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGPQ 662 (667)
Q Consensus 603 l~~-~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~ 662 (667)
+++ +.... .+.++ ..+.+|..++|+.| .+..+|+.+ -.+++|+.|+|++|...+
T Consensus 204 ms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N---~Lp~vPecl--y~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSL-DDLHNLRDVDLSEN---NLPIVPECL--YKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred cccccchhhcCCCch-hhhhhhhhcccccc---CCCcchHHH--hhhhhhheeccCcCceee
Confidence 777 33322 34444 34579999999999 777799999 899999999999997653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=2.2e-16 Score=164.14 Aligned_cols=210 Identities=16% Similarity=0.188 Sum_probs=166.2
Q ss_pred CccccccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCc
Q 038110 444 SDESRVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTN 522 (667)
Q Consensus 444 ~~~~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~ 522 (667)
+.+-.+..+..|++++|.+.+.|... ..+++-+|.+++|.+ ..||..+|-+|+-|-+||||+|++..||+.+..|.+
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I--etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI--ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc--ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 34556788999999999999999877 789999999999988 899999999999999999999999999999999999
Q ss_pred ccEEecCC------cccccCC--------------CCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEe
Q 038110 523 LHTLCLYG------GVGVVDG--------------VKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILT 582 (667)
Q Consensus 523 L~~L~L~~------~l~~LP~--------------~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~ 582 (667)
|++|.|++ .++.||. .....|.++..|.||+.+|++.|++..+|..+.++.+|..|+++.
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc
Confidence 99999998 6777883 122345677788888999999988888888888888888888875
Q ss_pred cCccCCCcccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCC
Q 038110 583 GHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 583 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
+....+.--.+.-..+..|+++.|.....+.++- .+++|+.|++.+|. -..+.+|+.+ +.+.+|+.+...+|.
T Consensus 255 N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avc-KL~kL~kLy~n~Nk-L~FeGiPSGI--GKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 255 NKITELNMTEGEWENLETLNLSRNQLTVLPDAVC-KLTKLTKLYANNNK-LTFEGIPSGI--GKLIQLEVFHAANNK 327 (1255)
T ss_pred CceeeeeccHHHHhhhhhhccccchhccchHHHh-hhHHHHHHHhccCc-ccccCCccch--hhhhhhHHHHhhccc
Confidence 5533333223334456667777666555555554 44788888887771 1345689888 888999988887763
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=1.5e-14 Score=173.46 Aligned_cols=125 Identities=21% Similarity=0.223 Sum_probs=68.6
Q ss_pred ccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCccccCCCcccEEe
Q 038110 449 VRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLC 527 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~si~~L~~L~~L~ 527 (667)
+.++++|++++|++....+...+++|++|++++|... ..+|..+ +++++|++|+|++|.+. .+|.+++++++|++|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~-~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLS-GEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCccc-ccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 3455555555554432212224555666666655553 4555554 66666666666666654 5566666666666666
Q ss_pred cCC-c-ccccCCCCccChhhhcCCCCCCeEEeecCCCC-CCCCCCcCCCCCCeeEEEe
Q 038110 528 LYG-G-VGVVDGVKNASLEELKHFPNLTSLELEVNDAN-TLPRGGLFFEKPERYKILT 582 (667)
Q Consensus 528 L~~-~-l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~-~lP~~~~~l~~L~~l~~~~ 582 (667)
|++ . ...+| ..++++++|++|++++|.+. .+|..+..+++|+.|++..
T Consensus 195 L~~n~l~~~~p-------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 195 LASNQLVGQIP-------RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred ccCCCCcCcCC-------hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 665 2 23455 55555555555555555543 3455555555555555543
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.50 E-value=6.5e-14 Score=168.03 Aligned_cols=201 Identities=16% Similarity=0.122 Sum_probs=129.6
Q ss_pred ccccceeEEEEeccCcc-ccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCccccCCCcc
Q 038110 447 SRVRHCTSIVILDVKTY-VLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPSSIGLLTNL 523 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~si~~L~~L 523 (667)
..+.+++.|++.+|.+. .+|... .+++|++|++++|... ..+|..+ +++++|++|+|++|.+. .+|..++++++|
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-GQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc-CcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 44566777777766653 344332 5667777777776654 5566655 77777777777777665 567777777777
Q ss_pred cEEecCC-cc-cccCCCCccChhhhcCCCCCCeEEeecCCCC-CCCCCCcCCCCCCeeEEEecCcc-CCCcccccccccc
Q 038110 524 HTLCLYG-GV-GVVDGVKNASLEELKHFPNLTSLELEVNDAN-TLPRGGLFFEKPERYKILTGHRW-SRGFYRSSNKSYR 599 (667)
Q Consensus 524 ~~L~L~~-~l-~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~-~lP~~~~~l~~L~~l~~~~~~~~-~~~~~~~~~~~l~ 599 (667)
++|++++ .+ ..+| ..++++++|++|++++|.+. .+|..+.++++|+.|++..+... .++........++
T Consensus 239 ~~L~L~~n~l~~~~p-------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 239 NHLDLVYNNLTGPIP-------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred CEEECcCceeccccC-------hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 7777766 33 3566 67777777777777777653 46666667777777776644311 2222223344566
Q ss_pred eEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 600 SFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 600 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
.+.+..+......+.....+++|+.|+|++| ...+.+|..+ ..+++|+.|++++|..
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~l--~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSN--KFSGEIPKNL--GKHNNLTVLDLSTNNL 368 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCC--CCcCcCChHH--hCCCCCcEEECCCCee
Confidence 6667665444433333445678888888888 4455678778 7888899998888754
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=3.6e-15 Score=131.62 Aligned_cols=164 Identities=19% Similarity=0.278 Sum_probs=93.6
Q ss_pred cCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccCh
Q 038110 465 LPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASL 543 (667)
Q Consensus 465 l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~ 543 (667)
+|....+++...|.+++|.. ..+|+++ ..+++|.+|++++|+++++|.+|+.|+.|+.|+++- .+..+|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl--~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lp------- 95 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKL--TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILP------- 95 (264)
T ss_pred cccccchhhhhhhhcccCce--eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCc-------
Confidence 33334455555555555555 4556665 666666666666666666666666666666666665 566666
Q ss_pred hhhcCCCCCCeEEeecCCCC--CCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeecCccccchHHHHHHhhh
Q 038110 544 EELKHFPNLTSLELEVNDAN--TLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRG 621 (667)
Q Consensus 544 ~~l~~L~~L~~L~l~~~~l~--~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~ 621 (667)
..||.++-|+.||+++|++. .+|..+..++.|..|+++.++..-++.-.+....++.+.+..+...+.+..+.. +..
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~-lt~ 174 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGD-LTR 174 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHH-HHH
Confidence 66666666666666666543 355555555666666555333222322222233334444444445555555543 468
Q ss_pred cceeeccccccccccccchhh
Q 038110 622 IEELSLAGLLDQDIKNFVNEL 642 (667)
Q Consensus 622 L~~L~L~~~~~~~~~~~~~~l 642 (667)
|++|++++| .+.-+|+.+
T Consensus 175 lrelhiqgn---rl~vlppel 192 (264)
T KOG0617|consen 175 LRELHIQGN---RLTVLPPEL 192 (264)
T ss_pred HHHHhcccc---eeeecChhh
Confidence 888888888 555567666
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.36 E-value=6.1e-12 Score=151.77 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=42.3
Q ss_pred ccceeEEEEecc-CccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCC-CCccCCccccCCCcccEE
Q 038110 449 VRHCTSIVILDV-KTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDM-NLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 449 ~~~lr~L~l~~~-~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~-~i~~lP~si~~L~~L~~L 526 (667)
+.+++.|++.++ .+..+|....+++|++|++.+|... ..+|..+ +++++|++|++++| .++.+|..+ ++.+|++|
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L 709 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL 709 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence 344444444433 2334444334555666666555443 5566655 66666666666665 455666554 45555555
Q ss_pred ecCC
Q 038110 527 CLYG 530 (667)
Q Consensus 527 ~L~~ 530 (667)
++++
T Consensus 710 ~Lsg 713 (1153)
T PLN03210 710 NLSG 713 (1153)
T ss_pred eCCC
Confidence 5544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.31 E-value=1e-14 Score=144.88 Aligned_cols=202 Identities=21% Similarity=0.203 Sum_probs=104.6
Q ss_pred ccccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHT 525 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~ 525 (667)
.....+.++.+++|++..+|... .+.+|+.|+.+.|.. ..+|+++ +.+..|..|+..+|++.++|+.++++..|..
T Consensus 88 g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~--~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~ 164 (565)
T KOG0472|consen 88 GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL--KELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSK 164 (565)
T ss_pred HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce--eecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHH
Confidence 33444455555555555554433 444555555555544 3444444 4444444444444444445544444444444
Q ss_pred EecCC-cccccCC----------------CCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCC
Q 038110 526 LCLYG-GVGVVDG----------------VKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSR 588 (667)
Q Consensus 526 L~L~~-~l~~LP~----------------~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~ 588 (667)
|++.+ .+..+|. .....|++++.|.+|..||+..|++..+| .|.....|..|+++.+....+
T Consensus 165 l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 165 LDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEML 243 (565)
T ss_pred hhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhh
Confidence 44444 3444430 00000156666666666666666666666 335555566665543332222
Q ss_pred Cc-ccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCC
Q 038110 589 GF-YRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 589 ~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
+. .....+.+..+.+..+...+.+..+ ..+++|+.|++++| .+..+|..+ +++ .|+.|-+.|||
T Consensus 244 pae~~~~L~~l~vLDLRdNklke~Pde~-clLrsL~rLDlSNN---~is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLKEVPDEI-CLLRSLERLDLSNN---DISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhcccccceeeeccccccccCchHH-HHhhhhhhhcccCC---ccccCCccc--ccc-eeeehhhcCCc
Confidence 21 1112233444444444444444444 34577888888877 666677777 777 78888888876
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.31 E-value=7.5e-13 Score=137.54 Aligned_cols=195 Identities=20% Similarity=0.239 Sum_probs=93.0
Q ss_pred ceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcccEEe
Q 038110 451 HCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHTLC 527 (667)
Q Consensus 451 ~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~~L~ 527 (667)
.+|.|+++.|.+.+++.. +.-.++..|++.+|.+ ..+..+-|.++.+|-.|.|+.|+++.||.- |.+|++|+.|+
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I--t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI--TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc--cccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 444444444444443321 1233455555555544 334333345555555555555555555442 33355555555
Q ss_pred cCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCc-ccccccccceEEee
Q 038110 528 LYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGF-YRSSNKSYRSFRID 604 (667)
Q Consensus 528 L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~l~~l~l~ 604 (667)
|.. .++..-+ ..|..|++|+.|.+..|++..+..| +..+.++++|++..++-..+.+ ..-....++.|.++
T Consensus 228 LnrN~irive~------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 228 LNRNRIRIVEG------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred ccccceeeehh------hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 544 3332211 2345555555555555555555555 3355666666655444222211 01112334455555
Q ss_pred cCccccch-HHHHHHhhhcceeeccccccccccccch-hhhhccCCCccEEEeecCC
Q 038110 605 LDANVRLK-DRLVVQLRGIEELSLAGLLDQDIKNFVN-ELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 605 ~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~~~l~~L~~L~l~~~~ 659 (667)
.|.+.... .++ ...++|+.|+|++| .+..+++ .+ ..++.|++|.|+.|.
T Consensus 302 ~NaI~rih~d~W-sftqkL~~LdLs~N---~i~~l~~~sf--~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 302 YNAIQRIHIDSW-SFTQKLKELDLSSN---RITRLDEGSF--RVLSQLEELNLSHNS 352 (873)
T ss_pred hhhhheeecchh-hhcccceeEecccc---ccccCChhHH--HHHHHhhhhcccccc
Confidence 54433322 122 12257777777777 4444443 34 566777777777764
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=5.6e-14 Score=124.15 Aligned_cols=138 Identities=20% Similarity=0.242 Sum_probs=81.2
Q ss_pred CccccccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCc
Q 038110 444 SDESRVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTN 522 (667)
Q Consensus 444 ~~~~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~ 522 (667)
+..-.+..+++|.+++|.+..+|+.. .+.+|.+|.+++|.. .++|.++ +.++.||.|+++-|++.-+|..||.++-
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhh-hhchhhhheecchhhhhcCccccCCCch
Confidence 33344455566666666665555544 555666666665554 5556555 5566666666665555555666666666
Q ss_pred ccEEecCC---cccccCC----------------CCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEec
Q 038110 523 LHTLCLYG---GVGVVDG----------------VKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTG 583 (667)
Q Consensus 523 L~~L~L~~---~l~~LP~----------------~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~ 583 (667)
|+.|||.. .-..||+ .-.-.|.++++|++|+.|.++.|.+-++|..++.|..|+.|++..+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 66665554 2223441 0001127777777777777777777777777777777777776644
Q ss_pred C
Q 038110 584 H 584 (667)
Q Consensus 584 ~ 584 (667)
.
T Consensus 184 r 184 (264)
T KOG0617|consen 184 R 184 (264)
T ss_pred e
Confidence 3
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.28 E-value=2.3e-12 Score=133.91 Aligned_cols=207 Identities=14% Similarity=0.127 Sum_probs=127.3
Q ss_pred ccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-CccccCCCcccE
Q 038110 449 VRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHT 525 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L~~ 525 (667)
..++.+|.+.+|.|+.+... ..+.+|.+|.++.|.. ..+|...|.+|++|+.|+|..|.|... --.|..|.+|+.
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri--ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI--TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccCcc--cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 35788888888888766543 3677888888888887 678888888888888888888887755 445777777777
Q ss_pred EecCC-cccccCCC-------------Ccc-----ChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCc
Q 038110 526 LCLYG-GVGVVDGV-------------KNA-----SLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHR 585 (667)
Q Consensus 526 L~L~~-~l~~LP~~-------------~~~-----~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~ 585 (667)
|.|.. .+..|.+. ... .-..+-+|+.|+.|++++|.|..+... ....++|+.|.++.+..
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 77766 45555420 000 002344555666666666655554332 23445666666655544
Q ss_pred cCCCc-ccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchh-hhhccCCCccEEEeecCC
Q 038110 586 WSRGF-YRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNE-LVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 586 ~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-l~~~~l~~L~~L~l~~~~ 659 (667)
..+++ .......++.|.|+.|.+.+..+.....+++|++|+|++| .....+-+. -.+.+++.|+.|.+.||.
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N--~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN--ELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC--eEEEEEecchhhhccchhhhheeecCce
Confidence 44332 1122334555666666666666666666678888888777 221111111 012568888999988874
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=6.2e-11 Score=134.25 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=81.0
Q ss_pred ccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEec
Q 038110 449 VRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCL 528 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L 528 (667)
+..++.|.+.+|++..+|... +++|++|++++|.. ..+|..++ .+|+.|+|++|.+..+|.++. .+|++|++
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L--tsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL--TSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc--ccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 457888888888888777644 36888888888776 57777652 368888888888888887765 47888888
Q ss_pred CC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEe
Q 038110 529 YG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILT 582 (667)
Q Consensus 529 ~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~ 582 (667)
++ .+..+| ..+. ++|++|++++|+++.+|..+. .+|+.|++..
T Consensus 270 s~N~L~~LP-------~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 270 FHNKISCLP-------ENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred cCCccCccc-------cccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC
Confidence 87 677777 4443 477888888877777776532 2445554443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=1.7e-10 Score=129.92 Aligned_cols=190 Identities=15% Similarity=0.112 Sum_probs=109.8
Q ss_pred ccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEec
Q 038110 449 VRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCL 528 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L 528 (667)
+++++.|.+.+|++..+|.. .++|++|++++|.. ..+|. .+..|+.|++++|+++.+|.. +++|++|+|
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L--~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdL 309 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPL--THLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSV 309 (788)
T ss_pred CCCCcEEEecCCccCcccCc--ccccceeeccCCch--hhhhh----chhhcCEEECcCCcccccccc---ccccceeEC
Confidence 46777777777777766642 35666666666654 34443 123455666666666666642 355677777
Q ss_pred CC-cccccCCC---------CccChhhhcCC-CCCCeEEeecCCCCCCCCCCcCC-----------------CCCCeeEE
Q 038110 529 YG-GVGVVDGV---------KNASLEELKHF-PNLTSLELEVNDANTLPRGGLFF-----------------EKPERYKI 580 (667)
Q Consensus 529 ~~-~l~~LP~~---------~~~~~~~l~~L-~~L~~L~l~~~~l~~lP~~~~~l-----------------~~L~~l~~ 580 (667)
++ .+..+|.. ....+..+..+ .+|++|++++|+++.+|....++ .+|+.|++
T Consensus 310 S~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdL 389 (788)
T PRK15387 310 SDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIV 389 (788)
T ss_pred CCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEe
Confidence 66 44444410 00001111112 36788888888877777532111 23444444
Q ss_pred EecCccCCCcccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 581 LTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 581 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
..+. +..++.....++.|.++++.....+. ...+|+.|++++| .+..+|+.+ ..+++|+.|+|++|+-
T Consensus 390 s~N~---Lt~LP~l~s~L~~LdLS~N~LssIP~----l~~~L~~L~Ls~N---qLt~LP~sl--~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 390 SGNR---LTSLPVLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN---QLTRLPESL--IHLSSETTVNLEGNPL 457 (788)
T ss_pred cCCc---ccCCCCcccCCCEEEccCCcCCCCCc----chhhhhhhhhccC---cccccChHH--hhccCCCeEECCCCCC
Confidence 4322 22233333455666666654443332 2246788888888 667799988 8899999999999975
Q ss_pred C
Q 038110 661 P 661 (667)
Q Consensus 661 l 661 (667)
.
T Consensus 458 s 458 (788)
T PRK15387 458 S 458 (788)
T ss_pred C
Confidence 4
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=5.1e-12 Score=138.23 Aligned_cols=207 Identities=19% Similarity=0.215 Sum_probs=152.4
Q ss_pred ccccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHT 525 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~ 525 (667)
..+.++.++++++|++..+|... .+.+|..|....|.. ..+|..+ ..+..|++|+...|.++.+|...+.+.+|++
T Consensus 238 p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l--~~lp~ri-~~~~~L~~l~~~~nel~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL--VALPLRI-SRITSLVSLSAAYNELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred cccccceeeecchhhhhcchHHHHhcccceEecccchhH--HhhHHHH-hhhhhHHHHHhhhhhhhhCCCcccccceeee
Confidence 45678899999999998888443 788999999988877 6788887 6788888888888888888888888889999
Q ss_pred EecCC-cccccCC-------------------------------------------CCccChhhhcCCCCCCeEEeecCC
Q 038110 526 LCLYG-GVGVVDG-------------------------------------------VKNASLEELKHFPNLTSLELEVND 561 (667)
Q Consensus 526 L~L~~-~l~~LP~-------------------------------------------~~~~~~~~l~~L~~L~~L~l~~~~ 561 (667)
|+|.. .+..+|. -...+..-+.+..+|+.|++++|+
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 99887 6666661 012234556778999999999999
Q ss_pred CCCCCCC-CcCCCCCCeeEEEecCccCCCcccccccccceEEeecCccccchHHHHHHhhhcceeecccccccccc-ccc
Q 038110 562 ANTLPRG-GLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIK-NFV 639 (667)
Q Consensus 562 l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~ 639 (667)
+..+|.. +.+|..|++|+++.+.-..++.-......++.|....|.....+ -.+.++.|+.+++++| +... .+|
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N--~L~~~~l~ 470 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCN--NLSEVTLP 470 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccc--hhhhhhhh
Confidence 9999987 45888889998885554444433333344555554445554444 3345689999999999 3222 234
Q ss_pred hhhhhccCCCccEEEeecCCCCee
Q 038110 640 NELVKVGSSQLKYLQIEGYRGPQF 663 (667)
Q Consensus 640 ~~l~~~~l~~L~~L~l~~~~~l~~ 663 (667)
..+ +.++|++|+++||..+.|
T Consensus 471 ~~~---p~p~LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 471 EAL---PSPNLKYLDLSGNTRLVF 491 (1081)
T ss_pred hhC---CCcccceeeccCCccccc
Confidence 443 449999999999986543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.12 E-value=2.2e-10 Score=129.83 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=94.2
Q ss_pred ceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC
Q 038110 451 HCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG 530 (667)
Q Consensus 451 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~ 530 (667)
+...|.+.++++..+|... .++|+.|++++|.. ..+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L--tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNEL--KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC--CcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 3456777777888887643 46899999999987 68998774 589999999999999998775 4799999999
Q ss_pred -cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecC
Q 038110 531 -GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGH 584 (667)
Q Consensus 531 -~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~ 584 (667)
.+..+| ..+. .+|+.|++++|++..+|..+. .+|+.|.++.+.
T Consensus 251 N~L~~LP-------~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 251 NRITELP-------ERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred CccCcCC-------hhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc
Confidence 888999 6664 589999999999999998753 578888887554
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=1.2e-09 Score=125.92 Aligned_cols=109 Identities=19% Similarity=0.306 Sum_probs=92.3
Q ss_pred CccccccceeEEEEeccC--ccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccC
Q 038110 444 SDESRVRHCTSIVILDVK--TYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGL 519 (667)
Q Consensus 444 ~~~~~~~~lr~L~l~~~~--~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~ 519 (667)
+.....++++.|-+..|. +..++. ...++.||+|++++|... ..+|.++ ++|.+||||+|+++.+..||.++++
T Consensus 539 ~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~ 616 (889)
T KOG4658|consen 539 AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSI-GELVHLRYLDLSDTGISHLPSGLGN 616 (889)
T ss_pred cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHH-hhhhhhhcccccCCCccccchHHHH
Confidence 333444579999999986 566665 447999999999998766 8999999 9999999999999999999999999
Q ss_pred CCcccEEecCC--cccccCCCCccChhhhcCCCCCCeEEeecCC
Q 038110 520 LTNLHTLCLYG--GVGVVDGVKNASLEELKHFPNLTSLELEVND 561 (667)
Q Consensus 520 L~~L~~L~L~~--~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~ 561 (667)
|..|.||++.. .+..+| ..+..|++|++|.+....
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~-------~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIP-------GILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHhhheecccccccccccc-------chhhhcccccEEEeeccc
Confidence 99999999998 566667 667779999999987654
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=4.2e-11 Score=124.66 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=113.6
Q ss_pred cccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEE
Q 038110 448 RVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L 526 (667)
.+.......++.|.+.++|... .|-.|..|.+..|.+ ..+|..+ +++..|.||||+.|++..+|..+|.|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccc--eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeE
Confidence 3444555666777777776654 466677777777766 6777777 788888888888888888888888776 7788
Q ss_pred ecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeec
Q 038110 527 CLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDL 605 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~ 605 (667)
-+++ ++..+| .+++.+..|.+||.+.|.+..+|..++.|.+|+.|.+..+.-..++ .....+....|+.
T Consensus 149 i~sNNkl~~lp-------~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp---~El~~LpLi~lDf 218 (722)
T KOG0532|consen 149 IVSNNKLTSLP-------EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLP---EELCSLPLIRLDF 218 (722)
T ss_pred EEecCccccCC-------cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCC---HHHhCCceeeeec
Confidence 7777 788888 7888777888888888888888887777777777755533322332 2222333444444
Q ss_pred -CccccchHHHHHHhhhcceeecccc
Q 038110 606 -DANVRLKDRLVVQLRGIEELSLAGL 630 (667)
Q Consensus 606 -~~~~~~~~~~~~~l~~L~~L~L~~~ 630 (667)
+|.+...+..+..|++|+.|.|.+|
T Consensus 219 ScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 219 SCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ccCceeecchhhhhhhhheeeeeccC
Confidence 3333444444455677777777777
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.90 E-value=5.8e-09 Score=117.78 Aligned_cols=171 Identities=18% Similarity=0.185 Sum_probs=122.1
Q ss_pred ccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEec
Q 038110 449 VRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCL 528 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L 528 (667)
..+++.|++.+|++..+|.. +++|++|++++|.. ..+|. ..++|+.|+|++|.+..+|... .+|+.|++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~L--tsLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQL--TSLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKLWI 289 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCcc--CcccC----cccccceeeccCCchhhhhhch---hhcCEEEC
Confidence 45899999999999998864 68999999999977 57775 2468999999999999998743 56889999
Q ss_pred CC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeecCc
Q 038110 529 YG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDA 607 (667)
Q Consensus 529 ~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 607 (667)
++ .+..+| .. +++|+.|++++|++..+|... .+|+.|.+..+. +..++.....++.|.|++|.
T Consensus 290 s~N~Lt~LP-------~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~---L~~LP~lp~~Lq~LdLS~N~ 353 (788)
T PRK15387 290 FGNQLTSLP-------VL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ---LTSLPTLPSGLQELSVSDNQ 353 (788)
T ss_pred cCCcccccc-------cc---ccccceeECCCCccccCCCCc---ccccccccccCc---cccccccccccceEecCCCc
Confidence 98 888888 42 478999999999999998742 346666665433 33344444567788888765
Q ss_pred cccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecC
Q 038110 608 NVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGY 658 (667)
Q Consensus 608 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~ 658 (667)
....+. ...+|+.|++++| .+..+|.. +++|+.|++++|
T Consensus 354 Ls~LP~----lp~~L~~L~Ls~N---~L~~LP~l-----~~~L~~LdLs~N 392 (788)
T PRK15387 354 LASLPT----LPSELYKLWAYNN---RLTSLPAL-----PSGLKELIVSGN 392 (788)
T ss_pred cCCCCC----CCcccceehhhcc---ccccCccc-----ccccceEEecCC
Confidence 554432 1246777777777 34444432 234555555554
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.89 E-value=4.9e-10 Score=111.97 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=88.6
Q ss_pred ccccceeEEEEeccCccccCCCC--CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCC-CCCccCCcc-ccCCCc
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVM--ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTD-MNLLSLPSS-IGLLTN 522 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~-~~i~~lP~s-i~~L~~ 522 (667)
..+.....|.+..|.|..+|+.. .+++||.|++++|.+ ..|-+..|.++..|-.|-+-+ |+|+.+|+. |++|..
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 44567777888888888888654 788888888888877 456666668888877665555 788888875 778888
Q ss_pred ccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEE
Q 038110 523 LHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKI 580 (667)
Q Consensus 523 L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~ 580 (667)
|+-|.+.. .+.-++. ..|..|++|..|.+..|.+..++.+ +..+..++.+++
T Consensus 142 lqrLllNan~i~Cir~------~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQ------DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred HHHHhcChhhhcchhH------HHHHHhhhcchhcccchhhhhhccccccchhccchHhh
Confidence 88888776 4544442 5667777777777777777777764 334555555443
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.87 E-value=1.8e-10 Score=126.39 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=127.2
Q ss_pred ccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEec
Q 038110 449 VRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCL 528 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L 528 (667)
..++++|...+|.+..+-......+|.+++++.+.. ..+|+.+ +.+.+|..|+...|.+..+|..|...++|++|.+
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l--~~lp~wi-~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL--SNLPEWI-GACANLEALNANHNRLVALPLRISRITSLVSLSA 294 (1081)
T ss_pred CcchheeeeccCcceeeccccccccceeeecchhhh--hcchHHH-HhcccceEecccchhHHhhHHHHhhhhhHHHHHh
Confidence 357889999998877554455678999999999988 6899666 9999999999999999999999999999999999
Q ss_pred CC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCc-CCC-CCCeeEEEecC---------------------
Q 038110 529 YG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGL-FFE-KPERYKILTGH--------------------- 584 (667)
Q Consensus 529 ~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~-~l~-~L~~l~~~~~~--------------------- 584 (667)
.. .++.+| .....+++|++|++..|++..+|..+. .+. .|..|+.+.+.
T Consensus 295 ~~nel~yip-------~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 295 AYNELEYIP-------PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred hhhhhhhCC-------CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 88 899999 888899999999999999999887522 111 12222221111
Q ss_pred ccCC----CcccccccccceEEeecCccccchHHHHHHhhhcceeecccc
Q 038110 585 RWSR----GFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGL 630 (667)
Q Consensus 585 ~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 630 (667)
++.+ -........++.|.|+.|.....+.+....+..|++|+|++|
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence 0111 111223344666667666555666666677778888888887
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=1.5e-10 Score=120.54 Aligned_cols=189 Identities=15% Similarity=0.158 Sum_probs=130.5
Q ss_pred EEEEeccCccccCCC---CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC
Q 038110 454 SIVILDVKTYVLPEV---MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG 530 (667)
Q Consensus 454 ~L~l~~~~~~~l~~~---~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~ 530 (667)
+|.+++..+..+|.. ..+..-...+++.|.+ ..+|..+ +.+..|..|.|..|.+..+|..+++|..|.||+|+.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~--~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF--SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccccc--ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence 344554455555432 2445555667777776 6778776 778888888888888888888888888888888887
Q ss_pred -cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeecCccc
Q 038110 531 -GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDANV 609 (667)
Q Consensus 531 -~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 609 (667)
.+..+| ..++.|+ |+.|-+++|+++.+|..++.+++|..|.++.|+...++........++.+.+..++..
T Consensus 131 NqlS~lp-------~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 131 NQLSHLP-------DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred chhhcCC-------hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh
Confidence 788888 7777775 7888888888888888877777777777776655544433333333444444445555
Q ss_pred cchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 610 RLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 610 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
..++... .+ .|..|++++| .+..+|-.+ ..+..|++|.|.+||-
T Consensus 203 ~lp~El~-~L-pLi~lDfScN---kis~iPv~f--r~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 203 DLPEELC-SL-PLIRLDFSCN---KISYLPVDF--RKMRHLQVLQLENNPL 246 (722)
T ss_pred hCCHHHh-CC-ceeeeecccC---ceeecchhh--hhhhhheeeeeccCCC
Confidence 5555554 22 6788888887 666678777 7888888888888774
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=4.6e-09 Score=97.40 Aligned_cols=127 Identities=15% Similarity=0.197 Sum_probs=51.7
Q ss_pred CccccccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccc-cCCC
Q 038110 444 SDESRVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSI-GLLT 521 (667)
Q Consensus 444 ~~~~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si-~~L~ 521 (667)
+....+.+++.|++.+|.+..+.... .+.+|++|++++|.. ..++. +..++.|+.|++++|.|+++++.+ ..++
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I--~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI--TKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-T
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCCC--ccccC--ccChhhhhhcccCCCCCCccccchHHhCC
Confidence 33444557899999999998876544 578999999999987 56654 488999999999999999997765 3689
Q ss_pred cccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC----CcCCCCCCeeE
Q 038110 522 NLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG----GLFFEKPERYK 579 (667)
Q Consensus 522 ~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~----~~~l~~L~~l~ 579 (667)
+|+.|+|++ .+..+- .+..+..+++|+.|++.+|.+...+.. +..+++|+.|+
T Consensus 89 ~L~~L~L~~N~I~~l~-----~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 89 NLQELYLSNNKISDLN-----ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp T--EEE-TTS---SCC-----CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCEEECcCCcCCChH-----HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 999999998 454443 124678899999999999988776653 44788888874
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=8.6e-09 Score=110.82 Aligned_cols=175 Identities=22% Similarity=0.239 Sum_probs=104.4
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCC-CCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccChhhhc
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSML-QVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELK 547 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~-~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~ 547 (667)
.++.+..|.+.++.. ..+|+.. ..+. +|+.|++++|.+..+|..++.+++|+.|+++. .+..+| ...+
T Consensus 114 ~~~~l~~L~l~~n~i--~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~-------~~~~ 183 (394)
T COG4886 114 ELTNLTSLDLDNNNI--TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP-------KLLS 183 (394)
T ss_pred cccceeEEecCCccc--ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhh-------hhhh
Confidence 456677777766665 5666655 5553 77777777777777776777777777777777 677777 5555
Q ss_pred CCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeecCccccchHHHHHHhhhcceeec
Q 038110 548 HFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSL 627 (667)
Q Consensus 548 ~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L 627 (667)
.+++|+.|++++|++..+|..+..+..|+.+.+..+..............+..+.+..+..... ......+.+++.|++
T Consensus 184 ~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~ 262 (394)
T COG4886 184 NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDL 262 (394)
T ss_pred hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhccccccceecc
Confidence 6777777777777777777654445556666555442122111111111111122222221111 233344567888888
Q ss_pred cccccccccccchhhhhccCCCccEEEeecCCCC
Q 038110 628 AGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 628 ~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
++| ....++. + .++.+|+.|+++++...
T Consensus 263 s~n---~i~~i~~-~--~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 263 SNN---QISSISS-L--GSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccc---ccccccc-c--cccCccCEEeccCcccc
Confidence 888 5555555 6 78888888888887654
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.67 E-value=2.3e-08 Score=104.10 Aligned_cols=127 Identities=17% Similarity=0.108 Sum_probs=69.8
Q ss_pred ccceeEEEEeccCccc-cCCCC-CC---CCccEEEccCCCCcc---ccccHHHHhCC-CCCcEEEcCCCCCc-----cCC
Q 038110 449 VRHCTSIVILDVKTYV-LPEVM-EC---PQLKLFSMPAEKNSF---FAIPHNLFRSM-LQVRVLDLTDMNLL-----SLP 514 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~-l~~~~-~~---~~Lr~L~l~~~~~~~---~~lp~~~~~~l-~~Lr~L~L~~~~i~-----~lP 514 (667)
..+++.|++.+|.+.. .+... .+ ++|+.|++++|.... ..+...+ ..+ ++|+.|+|++|.++ .++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-KDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH-HhCCCCceEEEcCCCcCCchHHHHHH
Confidence 4567777777665532 11110 11 447777777665420 0122222 455 67777777777665 344
Q ss_pred ccccCCCcccEEecCC-ccc-----ccCCCCccChhhhcCCCCCCeEEeecCCCCCC-----CCCCcCCCCCCeeEEEec
Q 038110 515 SSIGLLTNLHTLCLYG-GVG-----VVDGVKNASLEELKHFPNLTSLELEVNDANTL-----PRGGLFFEKPERYKILTG 583 (667)
Q Consensus 515 ~si~~L~~L~~L~L~~-~l~-----~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~l-----P~~~~~l~~L~~l~~~~~ 583 (667)
..+..+.+|++|++++ .+. .++ ..+..+++|++|++++|.+... +..+..+++|+.|+++.+
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~-------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALA-------EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHH-------HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 4556666777777766 232 334 4555566777777777765422 222335566777766543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.63 E-value=3.8e-08 Score=91.27 Aligned_cols=111 Identities=23% Similarity=0.239 Sum_probs=35.8
Q ss_pred ccCccccCCCCCCCCccEEEccCCCCccccccHHHHh-CCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccC
Q 038110 459 DVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFR-SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVD 536 (667)
Q Consensus 459 ~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~-~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP 536 (667)
.+.+...+...+..+++.|++.||.. ..+. .+ + .+.+|+.|+|++|.|+.++ .+..|.+|++|++++ .+..++
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I--~~Ie-~L-~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQI--STIE-NL-GATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ---------------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C
T ss_pred cccccccccccccccccccccccccc--cccc-ch-hhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc
Confidence 34555666666677889999999887 4443 33 4 5789999999999999886 477899999999998 788887
Q ss_pred CCCccChhhh-cCCCCCCeEEeecCCCCCCCCC--CcCCCCCCeeEEE
Q 038110 537 GVKNASLEEL-KHFPNLTSLELEVNDANTLPRG--GLFFEKPERYKIL 581 (667)
Q Consensus 537 ~~~~~~~~~l-~~L~~L~~L~l~~~~l~~lP~~--~~~l~~L~~l~~~ 581 (667)
..+ ..+++|++|++++|++..+-.- +..+++|+.|.+.
T Consensus 81 -------~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 81 -------EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp -------HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred -------cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence 656 4689999999999988776542 3456677777554
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.53 E-value=8.5e-09 Score=103.28 Aligned_cols=84 Identities=12% Similarity=0.151 Sum_probs=60.4
Q ss_pred cccccceeEEEEeccCccccCCCC--CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCC-ccccCCCc
Q 038110 446 ESRVRHCTSIVILDVKTYVLPEVM--ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLP-SSIGLLTN 522 (667)
Q Consensus 446 ~~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP-~si~~L~~ 522 (667)
....+++|+|++++|+|+.+.+.. .+++|-+|.+.+++.. ..+|.+.|++|..|+-|.+.-|.+..++ ..+..|++
T Consensus 87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 356789999999999998886543 7888888888774333 7888888888887777777777666543 34555666
Q ss_pred ccEEecCC
Q 038110 523 LHTLCLYG 530 (667)
Q Consensus 523 L~~L~L~~ 530 (667)
|..|.+..
T Consensus 166 l~lLslyD 173 (498)
T KOG4237|consen 166 LSLLSLYD 173 (498)
T ss_pred cchhcccc
Confidence 65555544
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.51 E-value=4.6e-08 Score=101.92 Aligned_cols=180 Identities=18% Similarity=0.087 Sum_probs=85.7
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCC---CcEEEcCCCCCc-----cCCccccCC-CcccEEecCC-ccc-----c
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQ---VRVLDLTDMNLL-----SLPSSIGLL-TNLHTLCLYG-GVG-----V 534 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~---Lr~L~L~~~~i~-----~lP~si~~L-~~L~~L~L~~-~l~-----~ 534 (667)
.+++|+.|++++|... ...+.. |..+.. |++|++++|.+. .++.++..+ ++|+.|++++ .+. .
T Consensus 79 ~~~~L~~L~l~~~~~~-~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 79 KGCGLQELDLSDNALG-PDGCGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred hcCceeEEEccCCCCC-hhHHHH-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 3556666666666553 222222 244443 666666666654 233445555 6666666666 222 2
Q ss_pred cCCCCccChhhhcCCCCCCeEEeecCCCCC-----CCCCCcCCCCCCeeEEEecCccC-----CCcccccccccceEEee
Q 038110 535 VDGVKNASLEELKHFPNLTSLELEVNDANT-----LPRGGLFFEKPERYKILTGHRWS-----RGFYRSSNKSYRSFRID 604 (667)
Q Consensus 535 LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~-----lP~~~~~l~~L~~l~~~~~~~~~-----~~~~~~~~~~l~~l~l~ 604 (667)
++ ..+..+++|++|++++|.+.. ++..+..+++|+.|++..+.... +.........++.+.++
T Consensus 157 ~~-------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 157 LA-------KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HH-------HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence 33 455556666666666666542 22222334566666655332110 00111122345555555
Q ss_pred cCcccc-chHHHHHHh----hhcceeeccccccc--cccccchhhhhccCCCccEEEeecCCC
Q 038110 605 LDANVR-LKDRLVVQL----RGIEELSLAGLLDQ--DIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 605 ~~~~~~-~~~~~~~~l----~~L~~L~L~~~~~~--~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
++.... ....+...+ +.|++|++++|.-. +...+...+ ..+++|+.|++++|.-
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~--~~~~~L~~l~l~~N~l 290 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL--AEKESLLELDLRGNKF 290 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH--hcCCCccEEECCCCCC
Confidence 533322 111111221 46666666666110 122334444 4456666666666643
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=3.2e-08 Score=95.59 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=60.4
Q ss_pred hCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCC
Q 038110 495 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFE 573 (667)
Q Consensus 495 ~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~ 573 (667)
...+.|..||||+|.|+.+-+|+.-++.++.|++++ .+..+. ++..|++|++||+++|.+.++-.+-..|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--------nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--------NLAELPQLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--------hhhhcccceEeecccchhHhhhhhHhhhc
Confidence 455678889999999999988988889999999998 666664 57888899999999988776655433455
Q ss_pred CCCeeEEE
Q 038110 574 KPERYKIL 581 (667)
Q Consensus 574 ~L~~l~~~ 581 (667)
+.+.|.+.
T Consensus 353 NIKtL~La 360 (490)
T KOG1259|consen 353 NIKTLKLA 360 (490)
T ss_pred CEeeeehh
Confidence 55555444
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=8.4e-08 Score=103.17 Aligned_cols=171 Identities=19% Similarity=0.226 Sum_probs=127.9
Q ss_pred cccceeEEEEeccCccccCCCCCCC--CccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccE
Q 038110 448 RVRHCTSIVILDVKTYVLPEVMECP--QLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHT 525 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~ 525 (667)
..+.+..+.+.+|.+..++...... +|+.|++++|.. ..+|..+ ..++.|+.|++++|.+..+|...+.+.+|+.
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI--ESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccch--hhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 3467899999999999998877554 899999999987 6787666 8999999999999999999998889999999
Q ss_pred EecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEee
Q 038110 526 LCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRID 604 (667)
Q Consensus 526 L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~ 604 (667)
|++++ .+..+| ..+..+.+|+.|.+++|.+..+|..+..+..+..+.+..+....+.........++.+.++
T Consensus 191 L~ls~N~i~~l~-------~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 191 LDLSGNKISDLP-------PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred eeccCCccccCc-------hhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence 99999 899999 6767777799999988876667776667777776654433322222333333445566666
Q ss_pred cCccccchHHHHHHhhhcceeecccc
Q 038110 605 LDANVRLKDRLVVQLRGIEELSLAGL 630 (667)
Q Consensus 605 ~~~~~~~~~~~~~~l~~L~~L~L~~~ 630 (667)
.+....... ...+.+++.|+++++
T Consensus 264 ~n~i~~i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 264 NNQISSISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccccc--ccccCccCEEeccCc
Confidence 554444433 344578888888887
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=2e-08 Score=96.96 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=108.3
Q ss_pred ccccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHT 525 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~ 525 (667)
+-++.+..+++++|.+..+..+. -.|.+|.|+++.|.. ..+.. + ..+.+|..||||+|.+.++-.+=.+|-|.++
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i--~~v~n-L-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI--RTVQN-L-AELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccce--eeehh-h-hhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 45678899999999998887666 579999999999987 34433 4 8999999999999999988777778889999
Q ss_pred EecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCC--CCcCCCCCCeeEEEecCccCCC
Q 038110 526 LCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPR--GGLFFEKPERYKILTGHRWSRG 589 (667)
Q Consensus 526 L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~--~~~~l~~L~~l~~~~~~~~~~~ 589 (667)
|.|.+ .++.|. .+++|.+|..||+++|++..+.. +|++|+.|+++.+..+.-..++
T Consensus 357 L~La~N~iE~LS--------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 357 LKLAQNKIETLS--------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eehhhhhHhhhh--------hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99998 677774 79999999999999999988765 5889999999987755544433
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=4.8e-07 Score=68.72 Aligned_cols=55 Identities=31% Similarity=0.465 Sum_probs=25.7
Q ss_pred CccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccEEecC
Q 038110 473 QLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLY 529 (667)
Q Consensus 473 ~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~ 529 (667)
+|++|++.+|.. ..+|+..|.++++|++|++++|.++.+|+ .+..+++|++|+++
T Consensus 2 ~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 2 NLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp TESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred cCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence 444555554433 34444444555555555555555544432 34444444444443
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.9e-06 Score=97.39 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=82.6
Q ss_pred CccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCccccCCCcccEEecCC-cc-cccCCCCccChhhhcCC
Q 038110 473 QLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYG-GV-GVVDGVKNASLEELKHF 549 (667)
Q Consensus 473 ~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~si~~L~~L~~L~L~~-~l-~~LP~~~~~~~~~l~~L 549 (667)
.++.|++.+|... ..+|..+ +++++|++|+|++|.+. .+|.+++.|.+|++|+|++ .+ ..+| ..+++|
T Consensus 419 ~v~~L~L~~n~L~-g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-------~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLR-GFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-------ESLGQL 489 (623)
T ss_pred EEEEEECCCCCcc-ccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-------hHHhcC
Confidence 4778888888876 7888886 89999999999999987 7899999999999999998 44 4678 889999
Q ss_pred CCCCeEEeecCCCC-CCCCCCcCC-CCCCeeEEEecC
Q 038110 550 PNLTSLELEVNDAN-TLPRGGLFF-EKPERYKILTGH 584 (667)
Q Consensus 550 ~~L~~L~l~~~~l~-~lP~~~~~l-~~L~~l~~~~~~ 584 (667)
++|++|++++|.+. .+|..+..+ .++..+.+..+.
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 99999999999865 678775532 355566655443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=7.6e-07 Score=67.64 Aligned_cols=59 Identities=31% Similarity=0.468 Sum_probs=47.4
Q ss_pred CCCcEEEcCCCCCccCCc-cccCCCcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCC
Q 038110 498 LQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDA 562 (667)
Q Consensus 498 ~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l 562 (667)
++|++|++++|+++.+|. .+..+++|++|++++ .+..+|. ..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~------~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP------DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET------TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH------HHHcCCCCCCEEeCcCCcC
Confidence 468888888888888875 577888888888888 7777773 5678888888888888763
No 37
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.18 E-value=0.0001 Score=74.65 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=103.5
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHH-HH----HHHhcCCeEEEEE
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRAS-LC----NQLKKNKTILMIL 250 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~-l~----~~L~~~kr~LlVL 250 (667)
+.||||+++.+++..... .+ ..+|+. ....+..++++.|...++.+........... +. .....+++++||+
T Consensus 53 G~GKTtl~~~l~~~l~~~-~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vlii 129 (269)
T TIGR03015 53 GAGKTTLIRNLLKRLDQE-RV-VAAKLV-NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALLVV 129 (269)
T ss_pred CCCHHHHHHHHHHhcCCC-Ce-EEeeee-CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 347899999999986632 11 233433 3456788999999999876544332222222 33 3333478899999
Q ss_pred eCCCCc--ccccccCCCc---CCCCCCcEEEEecCChhhhh--------hccCCcceEecCCCCHHHHHHHHH-------
Q 038110 251 DNIWEN--LDLLAIGIPH---GNDHKGCKILLTARSEDTLS--------RKMDSKQNFSVGILKEEEAWSGEF------- 310 (667)
Q Consensus 251 Ddvw~~--~~~~~l~~~~---~~~~~gs~iivTTr~~~va~--------~~~~~~~~~~l~~L~~~~s~~Lf~------- 310 (667)
||+|.. ..++.+.... .+......|++|....-... ........+++++++.+|..+++.
T Consensus 130 De~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g 209 (269)
T TIGR03015 130 DEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAG 209 (269)
T ss_pred ECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 999985 3455443211 11122234455554321100 001113467899999999988765
Q ss_pred ------------HHHHHHhCCcchHHHHHHHHHc------cC---ChHHHHHHHHHh
Q 038110 311 ------------KWVAKECAGLPVSIVTVSRALR------NK---SLFEWKDALQQL 346 (667)
Q Consensus 311 ------------~~i~~~c~GlPLai~~~g~~L~------~k---~~~~W~~~l~~l 346 (667)
+.|++.|+|.|..|..++..+- ++ +.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 210 NRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 7889999999999999988872 11 666666666554
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.6e-07 Score=94.14 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=48.3
Q ss_pred ccccceeEEEEeccCccccCC---CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc--ccCCC
Q 038110 447 SRVRHCTSIVILDVKTYVLPE---VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS--IGLLT 521 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s--i~~L~ 521 (667)
...+++|.+++.++.+...+. ...|++++.|++++|-+.-....-.+...|++|+.|+|+.|++...-++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345567777777665554442 2257777777777765431112233446777777777777765533222 23456
Q ss_pred cccEEecCC
Q 038110 522 NLHTLCLYG 530 (667)
Q Consensus 522 ~L~~L~L~~ 530 (667)
||+.|.|+.
T Consensus 198 ~lK~L~l~~ 206 (505)
T KOG3207|consen 198 HLKQLVLNS 206 (505)
T ss_pred hhheEEecc
Confidence 677777765
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=6.7e-06 Score=93.06 Aligned_cols=102 Identities=25% Similarity=0.295 Sum_probs=86.6
Q ss_pred ceeEEEEeccCcc-ccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCccccCCCcccEEe
Q 038110 451 HCTSIVILDVKTY-VLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLC 527 (667)
Q Consensus 451 ~lr~L~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~si~~L~~L~~L~ 527 (667)
.++.|.+.+|.+. .+|... .+++|+.|++++|... +.+|..+ +.+++|++|+|++|.+. .+|+++++|.+|++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-GNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-CcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 4788999988874 455433 7899999999999886 7899886 99999999999999998 7899999999999999
Q ss_pred cCC--cccccCCCCccChhhhcCC-CCCCeEEeecCC
Q 038110 528 LYG--GVGVVDGVKNASLEELKHF-PNLTSLELEVND 561 (667)
Q Consensus 528 L~~--~l~~LP~~~~~~~~~l~~L-~~L~~L~l~~~~ 561 (667)
|++ ....+| ..++.+ .++..+++.+|.
T Consensus 497 Ls~N~l~g~iP-------~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVP-------AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCC-------hHHhhccccCceEEecCCc
Confidence 998 445788 778764 577899999885
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=7.4e-07 Score=96.17 Aligned_cols=193 Identities=18% Similarity=0.125 Sum_probs=106.3
Q ss_pred cceeEEEEeccCccccCC-CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEec
Q 038110 450 RHCTSIVILDVKTYVLPE-VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCL 528 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L 528 (667)
..+..+++..|.+..+.. ...+++|..|++.+|.. ..+...+ ..+.+|++|+|++|.|+.+. .+..|..|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i--~~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI--EKIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccch--hhcccch-hhhhcchheecccccccccc-chhhccchhhhee
Confidence 444455556665554222 33567777777777765 4444433 67778888888888777764 3566666777777
Q ss_pred CC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCcccccccccceEEeecC
Q 038110 529 YG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLD 606 (667)
Q Consensus 529 ~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 606 (667)
.+ .+..++ .+..+++|+.+++++|.+..++.. ...+.+|+.+.+..+....+..+... ..+..+.+..+
T Consensus 148 ~~N~i~~~~--------~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~-~~l~~~~l~~n 218 (414)
T KOG0531|consen 148 SGNLISDIS--------GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLL-KKLVLLSLLDN 218 (414)
T ss_pred ccCcchhcc--------CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHH-HHHHHhhcccc
Confidence 77 555554 455577777888877777766662 23556666665553332222111111 11111111111
Q ss_pred ccccchHHHHHH-hhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCC
Q 038110 607 ANVRLKDRLVVQ-LRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 607 ~~~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
..... ...... ..+|+.|++.+| +...++..+ ..+.++..|++.++...
T Consensus 219 ~i~~~-~~l~~~~~~~L~~l~l~~n---~i~~~~~~~--~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 219 KISKL-EGLNELVMLHLRELYLSGN---RISRSPEGL--ENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cceec-cCcccchhHHHHHHhcccC---ccccccccc--cccccccccchhhcccc
Confidence 11111 111111 014778888887 444444555 66777777777766543
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=2.7e-05 Score=81.17 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=27.6
Q ss_pred CCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCC-CCccCCccccCCCcccEEecCC--cccccC
Q 038110 471 CPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDM-NLLSLPSSIGLLTNLHTLCLYG--GVGVVD 536 (667)
Q Consensus 471 ~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~-~i~~lP~si~~L~~L~~L~L~~--~l~~LP 536 (667)
+.+++.|++++|.. ..+|. + ..+|+.|.+++| .++.+|..+. .+|++|++++ .+..+|
T Consensus 51 ~~~l~~L~Is~c~L--~sLP~-L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDI--ESLPV-L---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCC--cccCC-C---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 45555555555532 44441 1 224555555553 3445554442 3555555554 344444
No 42
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.85 E-value=0.00018 Score=86.24 Aligned_cols=186 Identities=12% Similarity=0.120 Sum_probs=114.6
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCC-------------Ch-hHHHH-HHHHH
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQ-SHDIRKIQGEIADKLGLTFHEE-------------SE-SGRAS-LCNQL 240 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~-------------~~-~~~~~-l~~~L 240 (667)
-||||++...... ++.++|+++.. .-+...+...++..+....... .. ..... +...+
T Consensus 43 ~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (903)
T PRK04841 43 YGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIEL 116 (903)
T ss_pred CCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHH
Confidence 3789999998752 23699999964 4566777788877774211110 00 11111 33333
Q ss_pred hc-CCeEEEEEeCCCCcc--c-ccccCCCcCCCCCCcEEEEecCChhhhh--hccCCcceEecC----CCCHHHHHHHHH
Q 038110 241 KK-NKTILMILDNIWENL--D-LLAIGIPHGNDHKGCKILLTARSEDTLS--RKMDSKQNFSVG----ILKEEEAWSGEF 310 (667)
Q Consensus 241 ~~-~kr~LlVLDdvw~~~--~-~~~l~~~~~~~~~gs~iivTTr~~~va~--~~~~~~~~~~l~----~L~~~~s~~Lf~ 310 (667)
.. +.+++|||||+.... . .+.+..-+.....+-++|||||...-.. ..........+. +|+.+|+.++|.
T Consensus 117 ~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~ 196 (903)
T PRK04841 117 ADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFD 196 (903)
T ss_pred hcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHH
Confidence 32 578999999997642 1 1222222222345668889999843210 000112245555 999999999996
Q ss_pred ------------HHHHHHhCCcchHHHHHHHHHccCC--hH--HH-------HHHHHHhcCCCCcCchHHHHHHHHHHhh
Q 038110 311 ------------KWVAKECAGLPVSIVTVSRALRNKS--LF--EW-------KDALQQLRRPISTNFKDELKQIFLLIGY 367 (667)
Q Consensus 311 ------------~~i~~~c~GlPLai~~~g~~L~~k~--~~--~W-------~~~l~~l~~~~~~~l~~~lk~cfly~s~ 367 (667)
..+.+.|+|.|+++..++..++... .. .| ..+.+.+....+..+|+..+..+...|+
T Consensus 197 ~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~ 276 (903)
T PRK04841 197 QRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSV 276 (903)
T ss_pred hccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 7899999999999999888776331 11 11 1122222333355679999999999999
Q ss_pred h
Q 038110 368 T 368 (667)
Q Consensus 368 f 368 (667)
+
T Consensus 277 ~ 277 (903)
T PRK04841 277 L 277 (903)
T ss_pred c
Confidence 8
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=7.9e-06 Score=92.31 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=87.8
Q ss_pred ccceeEEEEeccCcc--ccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCccc
Q 038110 449 VRHCTSIVILDVKTY--VLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLH 524 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~--~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~ 524 (667)
..++++|++.+...- ..|. ...+|.|++|.+.|-.....++ ..++.++++|+.||+|+++++.+ ..|++|+||+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhH-HHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 357888888774321 1111 1268999999998866532222 34568999999999999999988 7899999999
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-------CcCCCCCCeeEEE
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-------GLFFEKPERYKIL 581 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-------~~~l~~L~~l~~~ 581 (667)
.|.+++ .+..- ..+.++-+|++|++||+|......-|.- -..|+.|+.|+.+
T Consensus 199 ~L~mrnLe~e~~-----~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 199 VLSMRNLEFESY-----QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HHhccCCCCCch-----hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 999988 33321 2235778899999999998764444421 1247777777766
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2e-05 Score=55.02 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=14.3
Q ss_pred CCcEEEcCCCCCccCCccccCCCcccEEecCC
Q 038110 499 QVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG 530 (667)
Q Consensus 499 ~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~ 530 (667)
+|++|++++|+|+.+|..+++|++|++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 34444455444444444444444444444444
No 45
>PF05729 NACHT: NACHT domain
Probab=97.79 E-value=0.0001 Score=68.38 Aligned_cols=131 Identities=21% Similarity=0.249 Sum_probs=78.7
Q ss_pred CCCCcHHHHHHHHHhccCCC----CCEEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEE
Q 038110 176 KNPDTTLAKEVAWKAENDKL----FDQAVFAEVSQSHDIR---KIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILM 248 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~Ll 248 (667)
+.||||+++.++.+...... +...+|++.+...+.. .+...|..+........ ...+...+...++++|
T Consensus 10 G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~ll 85 (166)
T PF05729_consen 10 GSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI----EELLQELLEKNKRVLL 85 (166)
T ss_pred CCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh----HHHHHHHHHcCCceEE
Confidence 45899999999988664433 4456677665533322 33333333332211111 0013333334789999
Q ss_pred EEeCCCCccc---------ccc-cCCCcCC-CCCCcEEEEecCChhhh--hhccCCcceEecCCCCHHHHHHHHH
Q 038110 249 ILDNIWENLD---------LLA-IGIPHGN-DHKGCKILLTARSEDTL--SRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 249 VLDdvw~~~~---------~~~-l~~~~~~-~~~gs~iivTTr~~~va--~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
|||++++... +.. +..-++. ...+.+++||||..... .........+++.+|++++..+++.
T Consensus 86 ilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 86 ILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred EEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 9999987632 111 2112222 24689999999998772 2223444689999999999988764
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=5.8e-06 Score=84.53 Aligned_cols=182 Identities=15% Similarity=0.057 Sum_probs=123.5
Q ss_pred CCCCCccEEEccCCCCccccccH-HHHhCCCCCcEEEcCCCCCcc---CCccccCCCcccEEecCCcccccCCCCccChh
Q 038110 469 MECPQLKLFSMPAEKNSFFAIPH-NLFRSMLQVRVLDLTDMNLLS---LPSSIGLLTNLHTLCLYGGVGVVDGVKNASLE 544 (667)
Q Consensus 469 ~~~~~Lr~L~l~~~~~~~~~lp~-~~~~~l~~Lr~L~L~~~~i~~---lP~si~~L~~L~~L~L~~~l~~LP~~~~~~~~ 544 (667)
.++++||...+.++.. ...+. +....++++|-|||+.|-+.. +-.-+..|++|+.|+|+.+--..|. ++ .
T Consensus 118 sn~kkL~~IsLdn~~V--~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~---~s-~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV--EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI---SS-N 191 (505)
T ss_pred hhHHhhhheeecCccc--cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc---cc-c
Confidence 3688999999988765 33332 234899999999999997654 3344568999999999982112220 00 1
Q ss_pred hhcCCCCCCeEEeecCCCCC--CCCCCcCCCCCCeeEEEecCccCCCc-ccccccccceEEeecCccccchH-HHHHHhh
Q 038110 545 ELKHFPNLTSLELEVNDANT--LPRGGLFFEKPERYKILTGHRWSRGF-YRSSNKSYRSFRIDLDANVRLKD-RLVVQLR 620 (667)
Q Consensus 545 ~l~~L~~L~~L~l~~~~l~~--lP~~~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~-~~~~~l~ 620 (667)
.-.-+++|+.|.++.|++.. +-.-...+++|+.|++..+++..+.. ....+..++.|.|++++...... .....++
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 11357899999999998762 11112378899999888775332222 23445678888898876666542 3445678
Q ss_pred hcceeeccccccccccc--cchh-----hhhccCCCccEEEeecCCCC
Q 038110 621 GIEELSLAGLLDQDIKN--FVNE-----LVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 621 ~L~~L~L~~~~~~~~~~--~~~~-----l~~~~l~~L~~L~l~~~~~l 661 (667)
.|..|.++.| ++.+ .|+. . ..+++|++|++..|+..
T Consensus 272 ~L~~Lnls~t---gi~si~~~d~~s~~kt--~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 272 GLNQLNLSST---GIASIAEPDVESLDKT--HTFPKLEYLNISENNIR 314 (505)
T ss_pred chhhhhcccc---CcchhcCCCccchhhh--cccccceeeecccCccc
Confidence 9999999888 4332 3433 3 57999999999999873
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00014 Score=75.93 Aligned_cols=113 Identities=20% Similarity=0.255 Sum_probs=75.4
Q ss_pred cccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCC-CCccCCccccCCCcccEE
Q 038110 448 RVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDM-NLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~-~i~~lP~si~~L~~L~~L 526 (667)
.+.++++|++++|.+..+|. -.++|++|.+.++... ..+|..+ ..+|++|++++| .+..+|.+ |+.|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nL-tsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--LPNELTEITIENCNNL-TTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCc-ccCCchh---hhhhhheEccCcccccccccc------cceE
Confidence 34678899999888888873 2346999999886654 6777655 257899999988 77788875 4445
Q ss_pred ecCC----cccccCCCCccChhhhcCC------------------CCCCeEEeecCCCCCCCCCCcCCCCCCeeEEE
Q 038110 527 CLYG----GVGVVDGVKNASLEELKHF------------------PNLTSLELEVNDANTLPRGGLFFEKPERYKIL 581 (667)
Q Consensus 527 ~L~~----~l~~LP~~~~~~~~~l~~L------------------~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~ 581 (667)
++.. .+..|| .++..| ++|++|++++|....+|..+. .+|+.|.+.
T Consensus 118 ~L~~n~~~~L~~LP-------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 118 EIKGSATDSIKNVP-------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLH 185 (426)
T ss_pred EeCCCCCcccccCc-------chHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence 5544 467777 333322 367777777776555555422 356666654
No 48
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.61 E-value=0.0022 Score=68.87 Aligned_cols=204 Identities=16% Similarity=0.082 Sum_probs=120.8
Q ss_pred cccccchHHHHHHHHHhcC------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 038110 158 YEAFESRMSTLNDILGALK------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIAD 219 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 219 (667)
+..+.||++++++|...+. .|||++++.++++.......-..++|+.....+...++.+|++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 3458899999999888762 2469999999998763322234666766666788899999999
Q ss_pred HhCCCC-C--CCChhHHHH-HHHHHhc-CCeEEEEEeCCCCcc------cccccCCCcCCCCCCcE--EEEecCChhhhh
Q 038110 220 KLGLTF-H--EESESGRAS-LCNQLKK-NKTILMILDNIWENL------DLLAIGIPHGNDHKGCK--ILLTARSEDTLS 286 (667)
Q Consensus 220 ~l~~~~-~--~~~~~~~~~-l~~~L~~-~kr~LlVLDdvw~~~------~~~~l~~~~~~~~~gs~--iivTTr~~~va~ 286 (667)
++.... . .....+... +.+.+.. ++..+||||+++.-. .+..+...+. ...+++ +|.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhh
Confidence 997622 1 111222233 6666652 456899999998742 1222222221 123433 566666554321
Q ss_pred hc------cCCcceEecCCCCHHHHHHHHH-----------------HHHHHHh----CCcchHHHHHHHHHc-----c-
Q 038110 287 RK------MDSKQNFSVGILKEEEAWSGEF-----------------KWVAKEC----AGLPVSIVTVSRALR-----N- 333 (667)
Q Consensus 287 ~~------~~~~~~~~l~~L~~~~s~~Lf~-----------------~~i~~~c----~GlPLai~~~g~~L~-----~- 333 (667)
.. .-....+.+++++.++..+++. ..|++.+ |..+.|+..+-.+.. +
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 10 0012467899999999888876 3344444 346666666544321 1
Q ss_pred -C-ChHHHHHHHHHhcCC----CCcCchHHHHHHH
Q 038110 334 -K-SLFEWKDALQQLRRP----ISTNFKDELKQIF 362 (667)
Q Consensus 334 -k-~~~~W~~~l~~l~~~----~~~~l~~~lk~cf 362 (667)
+ +.++...+++.+... ....+|.+.|.-+
T Consensus 268 ~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L 302 (394)
T PRK00411 268 RKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLL 302 (394)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1 667777776665221 2345566655433
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.58 E-value=8.8e-05 Score=51.74 Aligned_cols=41 Identities=12% Similarity=0.318 Sum_probs=34.1
Q ss_pred CCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc
Q 038110 472 PQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS 515 (667)
Q Consensus 472 ~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~ 515 (667)
++|++|++++|.. ..+|+.+ ++|++|++|++++|+++.+|.
T Consensus 1 ~~L~~L~l~~N~i--~~l~~~l-~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQI--TDLPPEL-SNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS---SSHGGHG-TTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCC--cccCchH-hCCCCCCEEEecCCCCCCCcC
Confidence 5789999999987 6888876 999999999999999987753
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=9.2e-06 Score=70.11 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=57.2
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccChhhhcC
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKH 548 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~ 548 (667)
....|....+++|.+ ..+|+.+-.+++-+..|+|++|.|..+|..+..++.|+.|+++. .+...| +-+..
T Consensus 51 ~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p-------~vi~~ 121 (177)
T KOG4579|consen 51 KGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEP-------RVIAP 121 (177)
T ss_pred CCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccch-------HHHHH
Confidence 344555566666665 56666665555566666666666666666666666666666666 566666 66666
Q ss_pred CCCCCeEEeecCCCCCCCCC
Q 038110 549 FPNLTSLELEVNDANTLPRG 568 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~lP~~ 568 (667)
|.+|-.|+..+|.+..+|-.
T Consensus 122 L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 122 LIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HHhHHHhcCCCCccccCcHH
Confidence 66666666666666666544
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.45 E-value=6.2e-06 Score=89.11 Aligned_cols=122 Identities=21% Similarity=0.245 Sum_probs=58.7
Q ss_pred EEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEE
Q 038110 502 VLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKI 580 (667)
Q Consensus 502 ~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~ 580 (667)
+.+.++|.+..+-.++.-|++|+.|+|++ ++... ..+..|++|+||||++|.+..+|.-
T Consensus 168 ~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--------~~Lr~l~~LkhLDlsyN~L~~vp~l------------ 227 (1096)
T KOG1859|consen 168 TASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--------DNLRRLPKLKHLDLSYNCLRHVPQL------------ 227 (1096)
T ss_pred hhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--------HHHHhcccccccccccchhcccccc------------
Confidence 33444444444445555555555555555 23222 2344455555555555555555543
Q ss_pred EecCccCCCcccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCC
Q 038110 581 LTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 581 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
......++.|.|.+|...+ .-.+ .++++|+.|+++.|--.+..+ ++.| ..+..|+.|.|.|||
T Consensus 228 -----------~~~gc~L~~L~lrnN~l~t-L~gi-e~LksL~~LDlsyNll~~hse-L~pL--wsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 228 -----------SMVGCKLQLLNLRNNALTT-LRGI-ENLKSLYGLDLSYNLLSEHSE-LEPL--WSLSSLIVLWLEGNP 290 (1096)
T ss_pred -----------chhhhhheeeeecccHHHh-hhhH-HhhhhhhccchhHhhhhcchh-hhHH--HHHHHHHHHhhcCCc
Confidence 2222223344444332222 2222 345778888887771111111 1122 346677777777776
No 52
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.41 E-value=0.00047 Score=67.97 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=79.5
Q ss_pred ccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH---------
Q 038110 161 FESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEI--------- 217 (667)
Q Consensus 161 ~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i--------- 217 (667)
|+||++++++|.+++.. |||+|++.+.+..+.. .+ ..+|+...+..... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 57999999999998753 4699999999977421 11 34444444433222 22222
Q ss_pred -----HHHhCCCCC--------CCChhHHHHHHHHHh-cCCeEEEEEeCCCCcc-ccc-------ccCCCc---CCCCCC
Q 038110 218 -----ADKLGLTFH--------EESESGRASLCNQLK-KNKTILMILDNIWENL-DLL-------AIGIPH---GNDHKG 272 (667)
Q Consensus 218 -----~~~l~~~~~--------~~~~~~~~~l~~~L~-~~kr~LlVLDdvw~~~-~~~-------~l~~~~---~~~~~g 272 (667)
...+..... .........+.+.+. .+++++||+||+.... ... .+...+ ....+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111111110 001111122444443 2456999999997765 111 111111 122333
Q ss_pred cEEEEecCChhhhhh-------ccCCcceEecCCCCHHHHHHHHH----------------HHHHHHhCCcchHHH
Q 038110 273 CKILLTARSEDTLSR-------KMDSKQNFSVGILKEEEAWSGEF----------------KWVAKECAGLPVSIV 325 (667)
Q Consensus 273 s~iivTTr~~~va~~-------~~~~~~~~~l~~L~~~~s~~Lf~----------------~~i~~~c~GlPLai~ 325 (667)
+ +|+++....+... ..+....+.+++|+.+++++++. ++|...+||.|..|.
T Consensus 158 ~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 158 S-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp E-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHH
T ss_pred e-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHh
Confidence 4 4444444433321 12333469999999999999877 567778888887664
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.37 E-value=2.9e-05 Score=83.84 Aligned_cols=173 Identities=18% Similarity=0.112 Sum_probs=110.9
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccChhhhcC
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKH 548 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~ 548 (667)
.+..+..+.+..|.. ..+-..+ +.+++|.+|++.+|.|..+...+..+.+|++|++++ .|..+. .+..
T Consensus 70 ~l~~l~~l~l~~n~i--~~~~~~l-~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--------~l~~ 138 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLI--AKILNHL-SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--------GLST 138 (414)
T ss_pred HhHhHHhhccchhhh--hhhhccc-ccccceeeeeccccchhhcccchhhhhcchheecccccccccc--------chhh
Confidence 355666666666655 3333334 889999999999999999987789999999999999 788875 5788
Q ss_pred CCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcc-cccccccceEEeecCccccchHHHHHHhhhcceeec
Q 038110 549 FPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFY-RSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSL 627 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L 627 (667)
|+.|+.|++++|.+..++.. ..+..|+.+.+..+....+... ......+..+.+.++.... .+... .+..+..+.+
T Consensus 139 l~~L~~L~l~~N~i~~~~~~-~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~-i~~~~-~~~~l~~~~l 215 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDISGL-ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE-IEGLD-LLKKLVLLSL 215 (414)
T ss_pred ccchhhheeccCcchhccCC-ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc-ccchH-HHHHHHHhhc
Confidence 88899999999999888764 4577777777765554433321 1222233334444433322 22221 1235555566
Q ss_pred cccccccccccchhhhhccCCC--ccEEEeecCCCCe
Q 038110 628 AGLLDQDIKNFVNELVKVGSSQ--LKYLQIEGYRGPQ 662 (667)
Q Consensus 628 ~~~~~~~~~~~~~~l~~~~l~~--L~~L~l~~~~~l~ 662 (667)
..| .+. ....+ ..+.. |+.+++.+|+..+
T Consensus 216 ~~n---~i~-~~~~l--~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 216 LDN---KIS-KLEGL--NELVMLHLRELYLSGNRISR 246 (414)
T ss_pred ccc---cce-eccCc--ccchhHHHHHHhcccCcccc
Confidence 666 221 12222 22333 7888888887654
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=5.6e-05 Score=85.54 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=18.1
Q ss_pred hcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEE
Q 038110 546 LKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKI 580 (667)
Q Consensus 546 l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~ 580 (667)
..+++||..||+|+++++.+ .|+++|++|+.|.+
T Consensus 169 c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSM 202 (699)
T ss_pred hhccCccceeecCCCCccCc-HHHhccccHHHHhc
Confidence 34555555556655555555 44455555555533
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=2.3e-05 Score=67.65 Aligned_cols=99 Identities=22% Similarity=0.225 Sum_probs=77.5
Q ss_pred ccEEEccCCCCc-cccccHHHHhCCCCCcEEEcCCCCCccCCccccCCC-cccEEecCC-cccccCCCCccChhhhcCCC
Q 038110 474 LKLFSMPAEKNS-FFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLT-NLHTLCLYG-GVGVVDGVKNASLEELKHFP 550 (667)
Q Consensus 474 Lr~L~l~~~~~~-~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~-~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~ 550 (667)
+..+++++|... +...+..+ .+..+|...+|++|.++++|+.+.... -+.+|+|.+ .+..+| .++..++
T Consensus 29 ~h~ldLssc~lm~i~davy~l-~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP-------eE~Aam~ 100 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYML-SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP-------EELAAMP 100 (177)
T ss_pred hhhcccccchhhHHHHHHHHH-hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch-------HHHhhhH
Confidence 344455555431 12233344 788889999999999999999987654 799999999 999999 9999999
Q ss_pred CCCeEEeecCCCCCCCCCCcCCCCCCeeEE
Q 038110 551 NLTSLELEVNDANTLPRGGLFFEKPERYKI 580 (667)
Q Consensus 551 ~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~ 580 (667)
.|+.|+++.|.+...|.-+..|.+|-.|..
T Consensus 101 aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 101 ALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred HhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 999999999999999998776666666643
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.13 E-value=9.1e-06 Score=87.86 Aligned_cols=125 Identities=15% Similarity=0.119 Sum_probs=83.1
Q ss_pred cccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEE
Q 038110 448 RVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L 526 (667)
.+.++...++..|.+..+.... -++.|++|++++|.. .... .+ ..+++|+.|||++|.+..+|.--..=.+|+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~--~~v~-~L-r~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF--TKVD-NL-RRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh--hhhH-HH-Hhcccccccccccchhccccccchhhhhheee
Confidence 4456777777777766554444 467888888888876 3333 44 88888888888888888777521111248888
Q ss_pred ecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC--CcCCCCCCeeEEEecC
Q 038110 527 CLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG--GLFFEKPERYKILTGH 584 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~--~~~l~~L~~l~~~~~~ 584 (667)
.+++ .+..| .++.+|.+|+.||+++|-+.....- ++.|..|..|++..|.
T Consensus 238 ~lrnN~l~tL--------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNALTTL--------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccHHHhh--------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888 56666 3678888888888888865443321 2355666666665444
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.00011 Score=71.62 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=67.2
Q ss_pred ceeEEEEeccCccccCCC----CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccc-cCCCcccE
Q 038110 451 HCTSIVILDVKTYVLPEV----MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLHT 525 (667)
Q Consensus 451 ~lr~L~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si-~~L~~L~~ 525 (667)
.+.-+.+.++.+...... ..++.++.|++.+|..+-.+--..++.+|++|++|+|+.|.+..--.+. -.+.+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 334555666555443322 2678899999999987522223456789999999999999765322222 35678999
Q ss_pred EecCC---cccccCCCCccChhhhcCCCCCCeEEeecCC
Q 038110 526 LCLYG---GVGVVDGVKNASLEELKHFPNLTSLELEVND 561 (667)
Q Consensus 526 L~L~~---~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~ 561 (667)
|-|.+ .-..+. ..+..||.++.|+++.|+
T Consensus 126 lVLNgT~L~w~~~~-------s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 126 LVLNGTGLSWTQST-------SSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEEcCCCCChhhhh-------hhhhcchhhhhhhhccch
Confidence 99988 222233 445666677777777664
No 58
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.06 E-value=0.00084 Score=66.45 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=54.7
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCChhHH------HH--HHHHHhcCCe
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQS--HDIRKIQGEIADKLGLTFHEESESGR------AS--LCNQLKKNKT 245 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~------~~--l~~~L~~~kr 245 (667)
+.|||||++.+|++.... +|+.++||++++. +++.++++.|...+-....+.+.... .. .......+++
T Consensus 26 G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 104 (249)
T cd01128 26 KAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKD 104 (249)
T ss_pred CCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 457899999999988754 8999999998776 89999999994332221111111111 11 2222234899
Q ss_pred EEEEEeCCCCc
Q 038110 246 ILMILDNIWEN 256 (667)
Q Consensus 246 ~LlVLDdvw~~ 256 (667)
.++++|++..-
T Consensus 105 vll~iDei~r~ 115 (249)
T cd01128 105 VVILLDSITRL 115 (249)
T ss_pred EEEEEECHHHh
Confidence 99999999764
No 59
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.94 E-value=0.16 Score=52.28 Aligned_cols=188 Identities=12% Similarity=-0.049 Sum_probs=106.7
Q ss_pred ccccchHHHHHHHHHhcC-------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 038110 159 EAFESRMSTLNDILGALK-------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIAD 219 (667)
Q Consensus 159 ~~~~gr~~~~~~i~~~l~-------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 219 (667)
..|+|++..++.+..++. .|||+||+.+.+..... | ..+..+..... ..+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~-~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKP-GDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCc-hhHHHHHH
Confidence 468899998888776653 25699999999876532 2 11222111112 22223333
Q ss_pred HhCCCCC------CCChhHHHH-HHHHHhcCCeEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhhhhhc-cCC
Q 038110 220 KLGLTFH------EESESGRAS-LCNQLKKNKTILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDTLSRK-MDS 291 (667)
Q Consensus 220 ~l~~~~~------~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~va~~~-~~~ 291 (667)
.+....- +........ +...+. +.+..+|+|+......|.. +++ +.+-|..||+...+.... ...
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhhc
Confidence 4332210 001111223 666666 5677788888766655542 221 245666778776553211 112
Q ss_pred cceEecCCCCHHHHHHHHH---------------HHHHHHhCCcchHHHHHHHHHc------c---CChHHHHHHHHHhc
Q 038110 292 KQNFSVGILKEEEAWSGEF---------------KWVAKECAGLPVSIVTVSRALR------N---KSLFEWKDALQQLR 347 (667)
Q Consensus 292 ~~~~~l~~L~~~~s~~Lf~---------------~~i~~~c~GlPLai~~~g~~L~------~---k~~~~W~~~l~~l~ 347 (667)
...+++++++.++..+++. ..|++.|+|.|-.+..++..+. + .+.+..+.++..+
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l- 229 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEML- 229 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh-
Confidence 3468999999999999988 7899999999966555544331 1 1555555565553
Q ss_pred CCCCcCchHHHHH
Q 038110 348 RPISTNFKDELKQ 360 (667)
Q Consensus 348 ~~~~~~l~~~lk~ 360 (667)
...+..++++.+.
T Consensus 230 ~~~~~~l~~~~~~ 242 (305)
T TIGR00635 230 MIDELGLDEIDRK 242 (305)
T ss_pred CCCCCCCCHHHHH
Confidence 2234445555444
No 60
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.93 E-value=0.0019 Score=66.99 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=54.8
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCChhHH------HH-HHHHH-hcCCe
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSH--DIRKIQGEIADKLGLTFHEESESGR------AS-LCNQL-KKNKT 245 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~~------~~-l~~~L-~~~kr 245 (667)
+.||||||+.||++...+ ||++++||.+++.+ ++.++++.|.-.+-....+...... .. ..+++ ..|++
T Consensus 179 GvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~d 257 (416)
T PRK09376 179 KAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKD 257 (416)
T ss_pred CCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 447899999999998865 89999999999988 8888888887322111111111111 11 33333 24899
Q ss_pred EEEEEeCCCCc
Q 038110 246 ILMILDNIWEN 256 (667)
Q Consensus 246 ~LlVLDdvw~~ 256 (667)
++|++|++..-
T Consensus 258 VlL~iDsItR~ 268 (416)
T PRK09376 258 VVILLDSITRL 268 (416)
T ss_pred EEEEEEChHHH
Confidence 99999999754
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.90 E-value=0.00041 Score=69.43 Aligned_cols=213 Identities=16% Similarity=0.111 Sum_probs=113.0
Q ss_pred ccccceeEEEEeccCccc-----cCCC-CCCCCccEEEccCCCC--ccccccHHH------HhCCCCCcEEEcCCCCCc-
Q 038110 447 SRVRHCTSIVILDVKTYV-----LPEV-MECPQLKLFSMPAEKN--SFFAIPHNL------FRSMLQVRVLDLTDMNLL- 511 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~~--~~~~lp~~~------~~~l~~Lr~L~L~~~~i~- 511 (667)
.....+..|.+++|.+.. +... ...++|+.-++++-.. ....+|+.+ +-+.++|++||||.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 455678888888886632 1111 1445777777654321 113344332 345668888888888554
Q ss_pred cCC----ccccCCCcccEEecCC-cccccCC-------CCccChhhhcCCCCCCeEEeecCCCCCCCCC-----CcCCCC
Q 038110 512 SLP----SSIGLLTNLHTLCLYG-GVGVVDG-------VKNASLEELKHFPNLTSLELEVNDANTLPRG-----GLFFEK 574 (667)
Q Consensus 512 ~lP----~si~~L~~L~~L~L~~-~l~~LP~-------~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-----~~~l~~ 574 (667)
.-| +-|.+++.|+.|.|.+ .++..-+ ..+.....+++-++|+.++..+|.+..-|.. +...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 222 2355677888888876 2221110 0000113345567888888888877766653 224567
Q ss_pred CCeeEEEecCccCCC-----cccccccccceEEeecCccccchH-HHH---HHhhhcceeeccccc--cccccccchhhh
Q 038110 575 PERYKILTGHRWSRG-----FYRSSNKSYRSFRIDLDANVRLKD-RLV---VQLRGIEELSLAGLL--DQDIKNFVNELV 643 (667)
Q Consensus 575 L~~l~~~~~~~~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~-~~~---~~l~~L~~L~L~~~~--~~~~~~~~~~l~ 643 (667)
|+.+++..+....-. +...-.+.++.|.|..|.....-. .+. ..+++|+.|+++.|. +.|...+...+.
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 777777654422110 011123345555555433322111 111 223578888887772 234445566664
Q ss_pred hccCCCccEEEeecCCC
Q 038110 644 KVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 644 ~~~l~~L~~L~l~~~~~ 660 (667)
...|+|+.|.+.+|..
T Consensus 267 -~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 267 -ESAPSLEVLELAGNEI 282 (382)
T ss_pred -ccCCCCceeccCcchh
Confidence 3477777777777753
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.85 E-value=0.0016 Score=60.46 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=66.0
Q ss_pred ceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc--cccCCCcccEEec
Q 038110 451 HCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS--SIGLLTNLHTLCL 528 (667)
Q Consensus 451 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~--si~~L~~L~~L~L 528 (667)
..-.+++.+|.+..++....+++|.+|.+.+|.+ ..+.+.+-.-+++|..|.|.+|.|.++-+ .+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI--t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI--TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcc--eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4455677777777777666778888888877776 56666665566678888888887765522 2445567777776
Q ss_pred CC-cccccCCCCccChhhhcCCCCCCeEEeec
Q 038110 529 YG-GVGVVDGVKNASLEELKHFPNLTSLELEV 559 (667)
Q Consensus 529 ~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~ 559 (667)
-+ .+...+. --.--+.++++|++||++.
T Consensus 121 l~Npv~~k~~---YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKN---YRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccC---ceeEEEEecCcceEeehhh
Confidence 55 3332220 0001256677888888764
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.80 E-value=0.0006 Score=68.26 Aligned_cols=181 Identities=16% Similarity=0.098 Sum_probs=111.3
Q ss_pred CCCCCccEEEccCCCCcc---ccccHHHHhCCCCCcEEEcCCCC----CccCCccc-------cCCCcccEEecCC----
Q 038110 469 MECPQLKLFSMPAEKNSF---FAIPHNLFRSMLQVRVLDLTDMN----LLSLPSSI-------GLLTNLHTLCLYG---- 530 (667)
Q Consensus 469 ~~~~~Lr~L~l~~~~~~~---~~lp~~~~~~l~~Lr~L~L~~~~----i~~lP~si-------~~L~~L~~L~L~~---- 530 (667)
.....+..|+++||.+.. ..+-+. +.+.+.||.-+++.-. ..++|+.+ -..++|++|+|+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~-L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKV-LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHH-HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 367889999999998741 123344 4888899999999862 23566643 3446999999998
Q ss_pred --cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC--------------CcCCCCCCeeEEEecCccCCC-----
Q 038110 531 --GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG--------------GLFFEKPERYKILTGHRWSRG----- 589 (667)
Q Consensus 531 --~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~--------------~~~l~~L~~l~~~~~~~~~~~----- 589 (667)
.+..+- .-|.+.+.|++|++.+|.+...-.+ +.+-..|+.|....|.-..-+
T Consensus 106 ~~g~~~l~-------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 106 PKGIRGLE-------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred ccchHHHH-------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 222232 4456789999999999987643222 124456666655544322111
Q ss_pred cccccccccceEEeecCccccc----hHHHHHHhhhcceeecccccc--ccccccchhhhhccCCCccEEEeecCC
Q 038110 590 FYRSSNKSYRSFRIDLDANVRL----KDRLVVQLRGIEELSLAGLLD--QDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 590 ~~~~~~~~l~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~--~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
......+.++.+.+..+.+... ........++|+.|+|..|.- .+...+-..+ ..+++|++|++++|.
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL--~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL--SSWPHLRELNLGDCL 252 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh--cccchheeecccccc
Confidence 1112234566666665433221 111123347999999999921 1222344555 678899999999985
No 64
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.76 E-value=0.058 Score=57.25 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=89.7
Q ss_pred ccccchHHHHHHHHHhcC------------------CCCcHHHHHHHHHhccC-CCC---CEEEEEEeCCCCCHHHHHHH
Q 038110 159 EAFESRMSTLNDILGALK------------------NPDTTLAKEVAWKAEND-KLF---DQAVFAEVSQSHDIRKIQGE 216 (667)
Q Consensus 159 ~~~~gr~~~~~~i~~~l~------------------~~~TtLa~~vy~~~~~~-~~F---~~~~wv~vs~~~~~~~i~~~ 216 (667)
..++||++++++|..++. .|||++++.++++.... ... -..+||......+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 457899999999998873 14699999999875411 111 13567777776678899999
Q ss_pred HHHHhC---CCCC--CCChhHHHH-HHHHHh-cCCeEEEEEeCCCCcc-c----ccccCCCc-CCCCCCc--EEEEecCC
Q 038110 217 IADKLG---LTFH--EESESGRAS-LCNQLK-KNKTILMILDNIWENL-D----LLAIGIPH-GNDHKGC--KILLTARS 281 (667)
Q Consensus 217 i~~~l~---~~~~--~~~~~~~~~-l~~~L~-~~kr~LlVLDdvw~~~-~----~~~l~~~~-~~~~~gs--~iivTTr~ 281 (667)
|++++. .... ..+..+... +.+.+. .+++++||||+++.-. . ...+.... .....++ .+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999984 2211 111222223 556663 2567999999998761 1 11221110 1111222 34445544
Q ss_pred hhhhhh----cc-C-CcceEecCCCCHHHHHHHHH
Q 038110 282 EDTLSR----KM-D-SKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 282 ~~va~~----~~-~-~~~~~~l~~L~~~~s~~Lf~ 310 (667)
...... .. . ....+.+++.+.++..+++.
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~ 209 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILE 209 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHH
Confidence 332110 00 1 12468899999998888876
No 65
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.75 E-value=0.43 Score=49.74 Aligned_cols=160 Identities=12% Similarity=-0.056 Sum_probs=91.6
Q ss_pred CcccccchHHHHHHHHHhcC-------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 038110 157 DYEAFESRMSTLNDILGALK-------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEI 217 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~-------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 217 (667)
....|+|+++.++.+..++. .||||||+.+.+..... | .++..+ ......-+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecc-cccChHHHHHH
Confidence 45678999999888765542 24699999999987632 2 112211 12222233444
Q ss_pred HHHhCCCCC------CCChhHHHH-HHHHHhcCCeEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhhhhhc-c
Q 038110 218 ADKLGLTFH------EESESGRAS-LCNQLKKNKTILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDTLSRK-M 289 (667)
Q Consensus 218 ~~~l~~~~~------~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~va~~~-~ 289 (667)
+..+....- +........ +...+. +.+..+|+|+..+...+.. .++ +.+-|..||+...+.... .
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHH
Confidence 444432110 000111222 555555 5567777777655433221 111 245566777765543211 1
Q ss_pred CCcceEecCCCCHHHHHHHHH---------------HHHHHHhCCcchHHHHHHH
Q 038110 290 DSKQNFSVGILKEEEAWSGEF---------------KWVAKECAGLPVSIVTVSR 329 (667)
Q Consensus 290 ~~~~~~~l~~L~~~~s~~Lf~---------------~~i~~~c~GlPLai~~~g~ 329 (667)
.....+++++++.++..+++. ..|++.|+|.|-.+..+..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 123478999999999999988 7899999999965544444
No 66
>PRK06893 DNA replication initiation factor; Validated
Probab=96.70 E-value=0.0054 Score=60.34 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=81.4
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCC
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWE 255 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~ 255 (667)
+.|||+||+.+.+....+ .....++++... ..... .+.+.+. +.-+|||||+|.
T Consensus 49 G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~---~~~~~-------------------~~~~~~~--~~dlLilDDi~~ 102 (229)
T PRK06893 49 SSGKSHLLKAVSNHYLLN--QRTAIYIPLSKS---QYFSP-------------------AVLENLE--QQDLVCLDDLQA 102 (229)
T ss_pred CCCHHHHHHHHHHHHHHc--CCCeEEeeHHHh---hhhhH-------------------HHHhhcc--cCCEEEEeChhh
Confidence 347899999999986532 334567765311 00000 1222232 235899999997
Q ss_pred c---ccccc-cCCCcCCC-CCCcEEEEecCCh----------hhhhhccCCcceEecCCCCHHHHHHHHHHHHHHHhCCc
Q 038110 256 N---LDLLA-IGIPHGND-HKGCKILLTARSE----------DTLSRKMDSKQNFSVGILKEEEAWSGEFKWVAKECAGL 320 (667)
Q Consensus 256 ~---~~~~~-l~~~~~~~-~~gs~iivTTr~~----------~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~i~~~c~Gl 320 (667)
. .+|+. +...+... ..|+.+||+|.+. +++.+ +.....++++++++++.++++.+.+.++ |+
T Consensus 103 ~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sR-l~~g~~~~l~~pd~e~~~~iL~~~a~~~--~l 179 (229)
T PRK06893 103 VIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASR-LTWGEIYQLNDLTDEQKIIVLQRNAYQR--GI 179 (229)
T ss_pred hcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHH-HhcCCeeeCCCCCHHHHHHHHHHHHHHc--CC
Confidence 4 45542 22222211 2356665554443 44332 3445689999999999999998555543 66
Q ss_pred chHHHHHHHHHcc--CChHHHHHHHHHh
Q 038110 321 PVSIVTVSRALRN--KSLFEWKDALQQL 346 (667)
Q Consensus 321 PLai~~~g~~L~~--k~~~~W~~~l~~l 346 (667)
++.-.++--+++. .+...-..+++.+
T Consensus 180 ~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 180 ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6665555555542 2555555555554
No 67
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.027 Score=58.36 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=94.5
Q ss_pred cccchHHHHHHHHHhcCC---------------CCcHHHHHHHHHh----ccCCCCCEEEEEE-eCCCCCHHHHHHHHHH
Q 038110 160 AFESRMSTLNDILGALKN---------------PDTTLAKEVAWKA----ENDKLFDQAVFAE-VSQSHDIRKIQGEIAD 219 (667)
Q Consensus 160 ~~~gr~~~~~~i~~~l~~---------------~~TtLa~~vy~~~----~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~ 219 (667)
.++|.+..++.+..++.. ||||+|+.++... ....|+|...|.. -+....+.+ .+++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHH
Confidence 456777777777776643 4599999998853 2336778777765 234444444 334444
Q ss_pred HhCCCCCCCChhHHHHHHHHHhcCCeEEEEEe-CCCCcccccccCCCcCCCCCCcEEEEecCChhhh-hhccCCcceEec
Q 038110 220 KLGLTFHEESESGRASLCNQLKKNKTILMILD-NIWENLDLLAIGIPHGNDHKGCKILLTARSEDTL-SRKMDSKQNFSV 297 (667)
Q Consensus 220 ~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLD-dvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~va-~~~~~~~~~~~l 297 (667)
.+..... ..++|++||=| |..+...++.+...+.....++.+|++|.+.+.. .+.......+++
T Consensus 84 ~~~~~p~--------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~ 149 (313)
T PRK05564 84 EVNKKPY--------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKL 149 (313)
T ss_pred HHhcCcc--------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeC
Confidence 4432111 12455555544 4455577888877777767788888888665432 222233468999
Q ss_pred CCCCHHHHHHHHH-----------HHHHHHhCCcchHHH
Q 038110 298 GILKEEEAWSGEF-----------KWVAKECAGLPVSIV 325 (667)
Q Consensus 298 ~~L~~~~s~~Lf~-----------~~i~~~c~GlPLai~ 325 (667)
.++++++....+. ..++..++|.|.-+.
T Consensus 150 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 150 NRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred CCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHH
Confidence 9999999876654 346777888775443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.49 E-value=0.00096 Score=38.76 Aligned_cols=22 Identities=45% Similarity=0.603 Sum_probs=18.1
Q ss_pred CCcEEEcCCCCCccCCccccCC
Q 038110 499 QVRVLDLTDMNLLSLPSSIGLL 520 (667)
Q Consensus 499 ~Lr~L~L~~~~i~~lP~si~~L 520 (667)
+|++|||++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5889999999999999887764
No 69
>PF13173 AAA_14: AAA domain
Probab=96.38 E-value=0.006 Score=53.98 Aligned_cols=110 Identities=18% Similarity=0.086 Sum_probs=70.8
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCC
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIW 254 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw 254 (667)
..||||++++++.+.. .....++++............+ ... +.+... .+..+|+||++.
T Consensus 12 ~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~~~~i~iDEiq 71 (128)
T PF13173_consen 12 GVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIK-PGKKYIFIDEIQ 71 (128)
T ss_pred CCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhc-cCCcEEEEehhh
Confidence 4588999999998765 2345667765543221100000 112 333333 356889999999
Q ss_pred CcccccccCCCcCCCCCCcEEEEecCChhhhhh-----ccCCcceEecCCCCHHHH
Q 038110 255 ENLDLLAIGIPHGNDHKGCKILLTARSEDTLSR-----KMDSKQNFSVGILKEEEA 305 (667)
Q Consensus 255 ~~~~~~~l~~~~~~~~~gs~iivTTr~~~va~~-----~~~~~~~~~l~~L~~~~s 305 (667)
...+|......+.+.....+|++|+........ ..|....++|.||+-.|.
T Consensus 72 ~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 72 YLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 998888776666665567899999998776521 123345789999998763
No 70
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.00018 Score=70.34 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=28.2
Q ss_pred HHhhhcceeeccccccccccccchhh-hhccCCCccEEEeecCCC
Q 038110 617 VQLRGIEELSLAGLLDQDIKNFVNEL-VKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 617 ~~l~~L~~L~L~~~~~~~~~~~~~~l-~~~~l~~L~~L~l~~~~~ 660 (667)
..++.|++|.|+.| +++ .|+.+ .....|.|.+|++.||-.
T Consensus 335 ~kf~~L~~lSlsRC--Y~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRC--YDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred Hhcchheeeehhhh--cCC--ChHHeeeeccCcceEEEEeccccC
Confidence 34579999999999 553 34332 226789999999988743
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.00022 Score=69.74 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=97.8
Q ss_pred CCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCccccCCCcccEEecCC--cccccCCCCccChhhhcC
Q 038110 472 PQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYG--GVGVVDGVKNASLEELKH 548 (667)
Q Consensus 472 ~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~si~~L~~L~~L~L~~--~l~~LP~~~~~~~~~l~~ 548 (667)
+.|+.|+++..... ..--..+++.+.+|+-|.|.|+.+. .+-..|.+=.+|+.|+|+. .+.+-. .-.-+.+
T Consensus 185 sRlq~lDLS~s~it-~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-----~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNSVIT-VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-----LQLLLSS 258 (419)
T ss_pred hhhHHhhcchhhee-HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH-----HHHHHHh
Confidence 45888888876654 2223445688888999999998877 4556677778888888887 332211 0033567
Q ss_pred CCCCCeEEeecCCCCC-C-CCCCcCC-CCCCeeEEEecCccCCCcccccccccceEEeecCccccchHHHHHHhhhccee
Q 038110 549 FPNLTSLELEVNDANT-L-PRGGLFF-EKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEEL 625 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~-l-P~~~~~l-~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 625 (667)
++.|..|++++|.+.. . .-.+.+. .+|..|+++.... +...+..+.+....++|.+|
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr--------------------nl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR--------------------NLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh--------------------hhhhhHHHHHHHhCCceeee
Confidence 7888888888886421 1 0001111 1333333331110 11222334444556899999
Q ss_pred ecccccccccc-ccchhhhhccCCCccEEEeecCCCC
Q 038110 626 SLAGLLDQDIK-NFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 626 ~L~~~~~~~~~-~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
+|+.| .-+. .+...+ ..|+.|++|.++.|.++
T Consensus 319 DLSD~--v~l~~~~~~~~--~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 319 DLSDS--VMLKNDCFQEF--FKFNYLQHLSLSRCYDI 351 (419)
T ss_pred ccccc--cccCchHHHHH--HhcchheeeehhhhcCC
Confidence 99998 3222 344555 67999999999999886
No 72
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.10 E-value=0.02 Score=59.92 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=54.9
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCChhHH------HH--HHHHHhcCCe
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQS--HDIRKIQGEIADKLGLTFHEESESGR------AS--LCNQLKKNKT 245 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~------~~--l~~~L~~~kr 245 (667)
+.|||||++.+++....+ ||+..+||.+++. +++.++++.|+..+-....+...... .. .......|++
T Consensus 178 g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~Gkd 256 (415)
T TIGR00767 178 KAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD 256 (415)
T ss_pred CCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 457899999999988754 8999999999865 79999999996543322222111111 11 2222234899
Q ss_pred EEEEEeCCCCc
Q 038110 246 ILMILDNIWEN 256 (667)
Q Consensus 246 ~LlVLDdvw~~ 256 (667)
.+|++|.+..-
T Consensus 257 VVLlIDEitR~ 267 (415)
T TIGR00767 257 VVILLDSITRL 267 (415)
T ss_pred eEEEEEChhHH
Confidence 99999999754
No 73
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.09 E-value=0.0094 Score=55.45 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=76.8
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcccc-CCCcccEEecCC-cccccCCCCccChhhhc
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIG-LLTNLHTLCLYG-GVGVVDGVKNASLEELK 547 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~-~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~ 547 (667)
-..+...+++.+|.. ..++. |..++.|..|.|++|+|+.+-+.++ .+++|..|.|.+ .+.+|-+ +..+.
T Consensus 40 ~~d~~d~iDLtdNdl--~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-----l~pLa 110 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDL--RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-----LDPLA 110 (233)
T ss_pred cccccceecccccch--hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh-----cchhc
Confidence 355778889998876 44443 5899999999999999999866665 456799999988 4444420 13467
Q ss_pred CCCCCCeEEeecCCCCCCCCC----CcCCCCCCeeEEE
Q 038110 548 HFPNLTSLELEVNDANTLPRG----GLFFEKPERYKIL 581 (667)
Q Consensus 548 ~L~~L~~L~l~~~~l~~lP~~----~~~l~~L~~l~~~ 581 (667)
.++.|++|.+-+|.++.-+.. +..+++|+.|+..
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 788999999999988777654 3477788877654
No 74
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.94 E-value=0.27 Score=55.60 Aligned_cols=188 Identities=18% Similarity=0.147 Sum_probs=117.2
Q ss_pred CCcHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCChhH-----------HHH----HHHHHh
Q 038110 178 PDTTLAKEVAWKAENDKLFDQAVFAEVSQ-SHDIRKIQGEIADKLGLTFHEESESG-----------RAS----LCNQLK 241 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~-----------~~~----l~~~L~ 241 (667)
|||||+-....... .=..++|.+... .-+...+...++..++.-.++..+.- ... +...|.
T Consensus 49 GKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela 125 (894)
T COG2909 49 GKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELA 125 (894)
T ss_pred cHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 67999999986322 124599999966 55789999999988874322211111 011 222222
Q ss_pred -cCCeEEEEEeCCCCcc--cc-cccCCCcCCCCCCcEEEEecCChhhhhhc-cC-CcceEecC----CCCHHHHHHHHH-
Q 038110 242 -KNKTILMILDNIWENL--DL-LAIGIPHGNDHKGCKILLTARSEDTLSRK-MD-SKQNFSVG----ILKEEEAWSGEF- 310 (667)
Q Consensus 242 -~~kr~LlVLDdvw~~~--~~-~~l~~~~~~~~~gs~iivTTr~~~va~~~-~~-~~~~~~l~----~L~~~~s~~Lf~- 310 (667)
-.+...+||||..-.. .. ..+..-+.....+=..|||||+..-.... +. .....+++ .++.+|+-++|.
T Consensus 126 ~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~ 205 (894)
T COG2909 126 SYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLND 205 (894)
T ss_pred hhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHH
Confidence 1457899999986541 12 12222233344567899999997532100 00 11122222 378899999998
Q ss_pred -----------HHHHHHhCCcchHHHHHHHHHccC-ChHHHHH--------HHHHhcCCCCcCchHHHHHHHHHHhhh
Q 038110 311 -----------KWVAKECAGLPVSIVTVSRALRNK-SLFEWKD--------ALQQLRRPISTNFKDELKQIFLLIGYT 368 (667)
Q Consensus 311 -----------~~i~~~c~GlPLai~~~g~~L~~k-~~~~W~~--------~l~~l~~~~~~~l~~~lk~cfly~s~f 368 (667)
+.+.+...|.+-|+..++=.+++. +.+.--. +.+.+-....+.+|+.++.-++-||++
T Consensus 206 ~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl 283 (894)
T COG2909 206 RGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVL 283 (894)
T ss_pred cCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Confidence 888999999999998888888733 3332222 222233444566799999999999998
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.92 E-value=0.0041 Score=60.21 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=52.5
Q ss_pred cccceeEEEEeccCccccCCCCCCCCccEEEccCC--CCccccccHHHHhCCCCCcEEEcCCCCCccCCcc---ccCCCc
Q 038110 448 RVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAE--KNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS---IGLLTN 522 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~--~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s---i~~L~~ 522 (667)
....+..+++.+..++.+...+.+++|+.|.++.| ... ..++--+ .++++|++|+|++|+|+- +++ ...|.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~-e~~P~l~~l~ls~Nki~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVS-GGLEVLA-EKAPNLKVLNLSGNKIKD-LSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCccccc-ccceehh-hhCCceeEEeecCCcccc-ccccchhhhhcc
Confidence 34566677777666666666677888888888888 333 4444444 566888888888887764 222 344555
Q ss_pred ccEEecCC
Q 038110 523 LHTLCLYG 530 (667)
Q Consensus 523 L~~L~L~~ 530 (667)
|..|++..
T Consensus 118 L~~Ldl~n 125 (260)
T KOG2739|consen 118 LKSLDLFN 125 (260)
T ss_pred hhhhhccc
Confidence 55666655
No 76
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=95.59 E-value=0.12 Score=58.50 Aligned_cols=152 Identities=15% Similarity=0.073 Sum_probs=88.9
Q ss_pred ccccchHHHHHHHHHhcC--------------CCCcHHHHHHHHHhccCCCCC---EEEEEEeCC---CCCHHHHHHHH-
Q 038110 159 EAFESRMSTLNDILGALK--------------NPDTTLAKEVAWKAENDKLFD---QAVFAEVSQ---SHDIRKIQGEI- 217 (667)
Q Consensus 159 ~~~~gr~~~~~~i~~~l~--------------~~~TtLa~~vy~~~~~~~~F~---~~~wv~vs~---~~~~~~i~~~i- 217 (667)
..++|++..+..+...+. .||||+|+.+++..+....+. ...||.+.. ..+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ll 233 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLL 233 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhc
Confidence 346677777777665543 256999999998765444442 245665532 22333322211
Q ss_pred --------------HHHhCCC------------------CCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCc--cccccc
Q 038110 218 --------------ADKLGLT------------------FHEESESGRAS-LCNQLKKNKTILMILDNIWEN--LDLLAI 262 (667)
Q Consensus 218 --------------~~~l~~~------------------~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~--~~~~~l 262 (667)
+...+.. .-+..+..... +.+.++ +++++++-|+.|.. ..|+.+
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccchhh
Confidence 1111110 00111222333 888888 78899998877765 568888
Q ss_pred CCCcCCCCCCcEEEE--ecCChhhhhhc-cCCcceEecCCCCHHHHHHHHHH
Q 038110 263 GIPHGNDHKGCKILL--TARSEDTLSRK-MDSKQNFSVGILKEEEAWSGEFK 311 (667)
Q Consensus 263 ~~~~~~~~~gs~iiv--TTr~~~va~~~-~~~~~~~~l~~L~~~~s~~Lf~~ 311 (667)
...+....+...|++ ||++....... ......+.+.+++.+|.+.++.+
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~ 364 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLN 364 (615)
T ss_pred hhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHH
Confidence 777766666665666 66654322111 11224678999999999999864
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.54 E-value=0.013 Score=57.01 Aligned_cols=213 Identities=15% Similarity=0.128 Sum_probs=101.6
Q ss_pred cccceeEEEEeccCccc-----cCCCC-CCCCccEEEccCCCCc--cccccHHH------HhCCCCCcEEEcCCCCCc-c
Q 038110 448 RVRHCTSIVILDVKTYV-----LPEVM-ECPQLKLFSMPAEKNS--FFAIPHNL------FRSMLQVRVLDLTDMNLL-S 512 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~--~~~lp~~~------~~~l~~Lr~L~L~~~~i~-~ 512 (667)
.+..+..+.+++|.++. +.... .-.+|+...++.-... ...+|+++ +-++++|+..+||.|-+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35677788888876632 11111 3455666655543210 02233222 356777888888887654 3
Q ss_pred CCcc----ccCCCcccEEecCC-cccccCCCC-c------cChhhhcCCCCCCeEEeecCCCCCCCCCCc-----CCCCC
Q 038110 513 LPSS----IGLLTNLHTLCLYG-GVGVVDGVK-N------ASLEELKHFPNLTSLELEVNDANTLPRGGL-----FFEKP 575 (667)
Q Consensus 513 lP~s----i~~L~~L~~L~L~~-~l~~LP~~~-~------~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~-----~l~~L 575 (667)
.|+. |.+-++|..|.|++ .++.+.+.. . .-.....+-|.|++.+...|++..-|...+ +=..|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 4443 45556677777766 333222100 0 000223445677777777777666665321 11355
Q ss_pred CeeEEEecCccCC--Cc--cccc--ccccceEEeecCccccchHHHH-HHh---hhcceeecccc--ccccccccchhhh
Q 038110 576 ERYKILTGHRWSR--GF--YRSS--NKSYRSFRIDLDANVRLKDRLV-VQL---RGIEELSLAGL--LDQDIKNFVNELV 643 (667)
Q Consensus 576 ~~l~~~~~~~~~~--~~--~~~~--~~~l~~l~l~~~~~~~~~~~~~-~~l---~~L~~L~L~~~--~~~~~~~~~~~l~ 643 (667)
+.+.+..+....- .. +.++ ...+..|.|..|.......... ..+ +.|++|.+..| ++.|..++...+.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 5565553331110 00 0111 2334444444433322221111 111 35666766666 1234445555554
Q ss_pred hccCCCccEEEeecCCC
Q 038110 644 KVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 644 ~~~l~~L~~L~l~~~~~ 660 (667)
..-.|+|..|...+|..
T Consensus 268 e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 268 EKFVPNLMPLPGDYNER 284 (388)
T ss_pred hhcCCCccccccchhhh
Confidence 44567777777666543
No 78
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.0058 Score=60.02 Aligned_cols=81 Identities=20% Similarity=0.124 Sum_probs=57.2
Q ss_pred HHhCCCCCcEEEcCCCCCcc---CCccccCCCcccEEecCC-----cccccCCCCccChhhhcCCCCCCeEEeecCCCC-
Q 038110 493 LFRSMLQVRVLDLTDMNLLS---LPSSIGLLTNLHTLCLYG-----GVGVVDGVKNASLEELKHFPNLTSLELEVNDAN- 563 (667)
Q Consensus 493 ~~~~l~~Lr~L~L~~~~i~~---lP~si~~L~~L~~L~L~~-----~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~- 563 (667)
+=....+++.|||.+|.|.. +-.-..+|++|++|+|+. .|+.+| ..+.+|+.|-+.++.+.
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----------~p~~nl~~lVLNgT~L~w 135 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----------LPLKNLRVLVLNGTGLSW 135 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----------ccccceEEEEEcCCCCCh
Confidence 33567899999999998873 333456899999999998 455555 23568999999988643
Q ss_pred -CCCCCCcCCCCCCeeEEEec
Q 038110 564 -TLPRGGLFFEKPERYKILTG 583 (667)
Q Consensus 564 -~lP~~~~~l~~L~~l~~~~~ 583 (667)
........++.++.|+++.+
T Consensus 136 ~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 136 TQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhcchhhhhhhhccc
Confidence 22333346677777766655
No 79
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.49 E-value=0.031 Score=49.43 Aligned_cols=104 Identities=21% Similarity=0.298 Sum_probs=69.0
Q ss_pred CCCCcHHHHHHHHHhccC---CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CChhHHHH-HHHHHhcCCeEEEEE
Q 038110 176 KNPDTTLAKEVAWKAEND---KLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHE-ESESGRAS-LCNQLKKNKTILMIL 250 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~---~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~-l~~~L~~~kr~LlVL 250 (667)
+.|||++++.+.++.... ..-...+|+.++...+...+...|+.+++..... ....+... +.+.+...+..+||+
T Consensus 14 G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lvi 93 (131)
T PF13401_consen 14 GSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLVI 93 (131)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEEE
T ss_pred CCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 458899999999875411 0123477999988879999999999999987665 23333334 777777566679999
Q ss_pred eCCCCc---ccccccCCCcCCCCCCcEEEEecCC
Q 038110 251 DNIWEN---LDLLAIGIPHGNDHKGCKILLTARS 281 (667)
Q Consensus 251 Ddvw~~---~~~~~l~~~~~~~~~gs~iivTTr~ 281 (667)
|++..- ..++.+.... + ..+.+||+..+.
T Consensus 94 De~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 94 DEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp ETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred eChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 999764 2233332222 2 455666665544
No 80
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.40 E-value=0.1 Score=53.85 Aligned_cols=120 Identities=20% Similarity=0.151 Sum_probs=77.6
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.||||||+.+..... ..| ..+|-..+-.+=++++++.. ++....|+|.+|.+|.|..-
T Consensus 59 ~GKTTlA~liA~~~~--~~f-----~~~sAv~~gvkdlr~i~e~a---------------~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 59 TGKTTLARLIAGTTN--AAF-----EALSAVTSGVKDLREIIEEA---------------RKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred CCHHHHHHHHHHhhC--Cce-----EEeccccccHHHHHHHHHHH---------------HHHHhcCCceEEEEehhhhc
Confidence 367999999998665 334 34444333333333333322 11222378999999999764
Q ss_pred --ccccccCCCcCCCCCCcEEEE--ecCChhhh--hhccCCcceEecCCCCHHHHHHHHHHHHHHHhCCcc
Q 038110 257 --LDLLAIGIPHGNDHKGCKILL--TARSEDTL--SRKMDSKQNFSVGILKEEEAWSGEFKWVAKECAGLP 321 (667)
Q Consensus 257 --~~~~~l~~~~~~~~~gs~iiv--TTr~~~va--~~~~~~~~~~~l~~L~~~~s~~Lf~~~i~~~c~GlP 321 (667)
.+=+.+ +|.-.+|.-|+| ||-+..-. ........++.+++|+.++-..++.+-+...+.|++
T Consensus 117 nK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~ 184 (436)
T COG2256 117 NKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLG 184 (436)
T ss_pred Chhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCC
Confidence 333333 344567887777 77666532 112234569999999999999999988888888888
No 81
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.36 E-value=0.11 Score=46.79 Aligned_cols=105 Identities=10% Similarity=0.111 Sum_probs=78.0
Q ss_pred ccccchhhHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 038110 3 KCLAPPTERQF-SYLRSYNNNIENLKAEVGKLKDGTESIQHAVDEAKRKGEEIEKKVEKLLDSGNNAIVEAEKFVGDEAA 81 (667)
Q Consensus 3 ~~~~~~v~~~~-~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~l~~~ayd~ed~ld~~~~ 81 (667)
|+++|.+...+ ..+.+..+.....+.-++.|.++++.|..++++.+..+...|..-+.=++++.+...+++++++.+..
T Consensus 8 gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk 87 (147)
T PF05659_consen 8 GAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSK 87 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444443 45566666677788899999999999999999998766555555577789999999999999977643
Q ss_pred hhhhhccccccchHHHhHhhhhHHHHHHHHHHH
Q 038110 82 ANKQCFKGLCANLKIRIQHSTEAPRQLEAIVKL 114 (667)
Q Consensus 82 ~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i 114 (667)
-. +.++...++.+++|+++.+.+...
T Consensus 88 ~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 88 VR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred cc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 22 345667778899999888888765
No 82
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.28 E-value=0.0081 Score=58.20 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=70.8
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCC--CCc-cCCccccCCCcccEEecCC-c---ccccCCCCccC
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDM--NLL-SLPSSIGLLTNLHTLCLYG-G---VGVVDGVKNAS 542 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~--~i~-~lP~si~~L~~L~~L~L~~-~---l~~LP~~~~~~ 542 (667)
.+..|..|.+.+... ..+-. |..|++|+.|+++.| .+. .++-...++++|++|++++ . +..++
T Consensus 41 ~~~~le~ls~~n~gl--tt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~------ 110 (260)
T KOG2739|consen 41 EFVELELLSVINVGL--TTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR------ 110 (260)
T ss_pred cccchhhhhhhccce--eeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc------
Confidence 455666666655544 22222 478899999999999 555 6777677779999999998 3 44443
Q ss_pred hhhhcCCCCCCeEEeecCCCCCCCCC----CcCCCCCCeeEEEecC
Q 038110 543 LEELKHFPNLTSLELEVNDANTLPRG----GLFFEKPERYKILTGH 584 (667)
Q Consensus 543 ~~~l~~L~~L~~L~l~~~~l~~lP~~----~~~l~~L~~l~~~~~~ 584 (667)
.+.+|.||..|++..|....+-.. +.-+++|+.|+.....
T Consensus 111 --pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 111 --PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred --hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 577888999999999876665432 2356777777554333
No 83
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.94 E-value=0.073 Score=52.70 Aligned_cols=103 Identities=12% Similarity=0.062 Sum_probs=69.5
Q ss_pred ccchhhHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 038110 5 LAPPTERQFSYLRSYN-NNIENLKAEVGKLKDGTESIQHAVDEA-KRKGEEIEKKVEKLLDSGNNAIVEAEKFVGDEAAA 82 (667)
Q Consensus 5 ~~~~v~~~~~~l~~~~-~~~~~~~~~~~~L~~~l~~i~~~l~~a-e~~~~~~~~~~~~Wl~~l~~~ayd~ed~ld~~~~~ 82 (667)
.+..+++.+.-+...| ..+.-++.+++-++.+++++|.||++. +.....++. ...+..++.+.||++|.++|-.-..
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDaCi~k 375 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYVVDACISK 375 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeeeeehhhcC
Confidence 4556666666554433 567889999999999999999999987 443444444 9999999999999999999874321
Q ss_pred hhhhccccccchHHHhHhhhhHHHHHHHHH
Q 038110 83 NKQCFKGLCANLKIRIQHSTEAPRQLEAIV 112 (667)
Q Consensus 83 ~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~ 112 (667)
. ...|| ....-..+..+|+-++++++
T Consensus 376 ~---~P~Wc-l~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 376 S---VPHWC-LERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred C---CcHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 1 11111 12233455556666555543
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.59 E-value=0.021 Score=30.76 Aligned_cols=17 Identities=47% Similarity=0.704 Sum_probs=10.5
Q ss_pred CCCcEEEcCCCCCccCC
Q 038110 498 LQVRVLDLTDMNLLSLP 514 (667)
Q Consensus 498 ~~Lr~L~L~~~~i~~lP 514 (667)
++|+.|+|++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46888888888888776
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.45 E-value=0.011 Score=34.22 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=15.4
Q ss_pred CCCeEEeecCCCCCCCCCCc
Q 038110 551 NLTSLELEVNDANTLPRGGL 570 (667)
Q Consensus 551 ~L~~L~l~~~~l~~lP~~~~ 570 (667)
+|++||+++|+++.+|+++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 57888888888888887744
No 86
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.0036 Score=60.88 Aligned_cols=79 Identities=28% Similarity=0.287 Sum_probs=41.1
Q ss_pred CccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccChhhhcCCCC
Q 038110 473 QLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPN 551 (667)
Q Consensus 473 ~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~ 551 (667)
+.+.|.+.|+.. ..| ++..+|+.|.||.|+-|.|+.|- .+..+++|+.|.|+. .|..|-. +.-+.+|++
T Consensus 20 ~vkKLNcwg~~L--~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldE-----L~YLknlps 89 (388)
T KOG2123|consen 20 NVKKLNCWGCGL--DDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDE-----LEYLKNLPS 89 (388)
T ss_pred HhhhhcccCCCc--cHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHH-----HHHHhcCch
Confidence 444444444443 222 23456666666666666666552 345556666666655 2222210 023456666
Q ss_pred CCeEEeecCC
Q 038110 552 LTSLELEVND 561 (667)
Q Consensus 552 L~~L~l~~~~ 561 (667)
|+.|.|..|.
T Consensus 90 Lr~LWL~ENP 99 (388)
T KOG2123|consen 90 LRTLWLDENP 99 (388)
T ss_pred hhhHhhccCC
Confidence 6666666664
No 87
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.87 E-value=0.62 Score=50.25 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=41.4
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEE--ecCChhhh--hhccCCcceEecCCCCHHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILL--TARSEDTL--SRKMDSKQNFSVGILKEEEAWSGEFK 311 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iiv--TTr~~~va--~~~~~~~~~~~l~~L~~~~s~~Lf~~ 311 (667)
+++.+|++|+++.. .+.+.+...+. .|..+++ ||.+.... .........+.+.+++.++.+.++.+
T Consensus 91 g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~ 162 (413)
T PRK13342 91 GRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKR 162 (413)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHH
Confidence 67899999999875 34444433332 3555555 34443211 11122336899999999999999874
No 88
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.77 E-value=0.036 Score=29.79 Aligned_cols=17 Identities=47% Similarity=0.810 Sum_probs=11.1
Q ss_pred CCCCeEEeecCCCCCCC
Q 038110 550 PNLTSLELEVNDANTLP 566 (667)
Q Consensus 550 ~~L~~L~l~~~~l~~lP 566 (667)
++|+.|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47899999999888877
No 89
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=0.0039 Score=60.61 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=47.9
Q ss_pred ccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc--cccCCCcccEE
Q 038110 449 VRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS--SIGLLTNLHTL 526 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~--si~~L~~L~~L 526 (667)
+.+++.|++.++.+..+.-..+++.|.+|.|+-|.+ ..+.+ |..++.|+.|.|..|.|..+-+ -+.+|++|++|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkI--ssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKI--SSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeecccc--ccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 345666666666666655555667777777776665 33433 3667777777777776665533 35566666666
Q ss_pred ecCC
Q 038110 527 CLYG 530 (667)
Q Consensus 527 ~L~~ 530 (667)
.|..
T Consensus 94 WL~E 97 (388)
T KOG2123|consen 94 WLDE 97 (388)
T ss_pred hhcc
Confidence 6644
No 90
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.36 E-value=0.95 Score=51.45 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=55.3
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
++.-++|||++... ..|+.+...+..-....++|+||.+. .+..........+++..++.++..+.+.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 44557889999876 44777655554444566777766664 3332223334689999999999877665
Q ss_pred ------HHHHHHhCCcc-hHHHH
Q 038110 311 ------KWVAKECAGLP-VSIVT 326 (667)
Q Consensus 311 ------~~i~~~c~GlP-Lai~~ 326 (667)
..|++.++|.. -|+..
T Consensus 198 id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 198 FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 57778888754 34433
No 91
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.28 E-value=1.6 Score=46.08 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=43.3
Q ss_pred CCeEEEEEeCCCCcc--cccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWENL--DLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~~--~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+++-++|+|++.... .++.+...+.......++|++|.+. .+.....+....+++.+++.++..+.+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~ 188 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLK 188 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHH
Confidence 455689999998763 4666655554444566677666543 3322223334689999999998776553
No 92
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.21 E-value=1.3 Score=48.62 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=46.1
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEE-EecCChhhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKIL-LTARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~ii-vTTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+++-++|+|+++.. ..|+.+...+......+++| +||+...+..........+++.+++.++....+.
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~ 197 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLE 197 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHH
Confidence 56778999999875 55777765555444455555 4555555543223344679999999999888776
No 93
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.11 E-value=0.74 Score=53.31 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=54.8
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEe-cCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLT-ARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivT-Tr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|||++... ...+.+...+-.-....++|++ |....+..........|++.+|+.++....+.
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~ 197 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP 197 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 67789999999875 4556655544433345555554 44454442223334689999999999887665
Q ss_pred ------HHHHHHhCCcchHHH
Q 038110 311 ------KWVAKECAGLPVSIV 325 (667)
Q Consensus 311 ------~~i~~~c~GlPLai~ 325 (667)
..|++.++|.|--+.
T Consensus 198 ~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 198 FEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 678888999775333
No 94
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.04 E-value=0.72 Score=51.56 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=55.8
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcE-EEEecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCK-ILLTARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~-iivTTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
++.-++|+|++... ..++.+...+..-....+ |++||....+..........+.+..++.++..+.+.
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC
Confidence 56678999999875 456666555544334445 555665555543333334689999999998877654
Q ss_pred ------HHHHHHhCCcchHHHHH
Q 038110 311 ------KWVAKECAGLPVSIVTV 327 (667)
Q Consensus 311 ------~~i~~~c~GlPLai~~~ 327 (667)
+.|++.++|.|.-+..+
T Consensus 203 ~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 203 HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 45788888888544443
No 95
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.61 E-value=0.29 Score=47.91 Aligned_cols=141 Identities=15% Similarity=0.148 Sum_probs=74.1
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.|||+||+.+++... ......++++++.-. ... ..+.+.++ + .-+|||||+...
T Consensus 49 ~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~------~~~----------------~~~~~~~~-~-~~lLvIDdi~~l 102 (226)
T TIGR03420 49 SGKSHLLQAACAAAE--ERGKSAIYLPLAELA------QAD----------------PEVLEGLE-Q-ADLVCLDDVEAI 102 (226)
T ss_pred CCHHHHHHHHHHHHH--hcCCcEEEEeHHHHH------HhH----------------HHHHhhcc-c-CCEEEEeChhhh
Confidence 467999999998765 223345566543321 110 01122233 2 238999999865
Q ss_pred c---ccc-ccCCCcCC-CCCCcEEEEecCChhhh--------hhccCCcceEecCCCCHHHHHHHHHHHHHHHhCCcchH
Q 038110 257 L---DLL-AIGIPHGN-DHKGCKILLTARSEDTL--------SRKMDSKQNFSVGILKEEEAWSGEFKWVAKECAGLPVS 323 (667)
Q Consensus 257 ~---~~~-~l~~~~~~-~~~gs~iivTTr~~~va--------~~~~~~~~~~~l~~L~~~~s~~Lf~~~i~~~c~GlPLa 323 (667)
. .|. .+...+.. ...+.+||+||+..... .........+++.++++++-..++...+ .+ .|+++.
T Consensus 103 ~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~-~~-~~~~~~ 180 (226)
T TIGR03420 103 AGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA-AR-RGLQLP 180 (226)
T ss_pred cCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH-HH-cCCCCC
Confidence 3 332 23222211 12345788888753211 1112223578999999988888875322 22 356655
Q ss_pred HHHHHHHHcc--CChHHHHHHHHH
Q 038110 324 IVTVSRALRN--KSLFEWKDALQQ 345 (667)
Q Consensus 324 i~~~g~~L~~--k~~~~W~~~l~~ 345 (667)
-.++..+... -+..+-..+++.
T Consensus 181 ~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 181 DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Confidence 5555444431 244444444444
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.59 E-value=1.5 Score=45.73 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=38.6
Q ss_pred CeEEEEEeCCCCcc--cccccCCCcCCCCCCcEEEEecCChh-hhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 244 KTILMILDNIWENL--DLLAIGIPHGNDHKGCKILLTARSED-TLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 244 kr~LlVLDdvw~~~--~~~~l~~~~~~~~~gs~iivTTr~~~-va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
.+-+||+||+.... ..+.+...+......+++|+||.... +..........+.+.+++.++....+.
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~ 194 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLE 194 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHH
Confidence 34589999996542 23333333333334567777775432 211112233578899999988777665
No 97
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.47 E-value=0.58 Score=41.56 Aligned_cols=94 Identities=14% Similarity=0.009 Sum_probs=48.2
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.||||+|+.+++..... -...+++..++..........+... ........... .+.-+||+||++..
T Consensus 30 ~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~lilDe~~~~ 96 (151)
T cd00009 30 TGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF----------LVRLLFELAEK-AKPGVLFIDEIDSL 96 (151)
T ss_pred CCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh----------hHhHHHHhhcc-CCCeEEEEeChhhh
Confidence 36799999999987521 2346666655543322222111100 00000111222 56789999999853
Q ss_pred -----ccccccCCCcCCC---CCCcEEEEecCChh
Q 038110 257 -----LDLLAIGIPHGND---HKGCKILLTARSED 283 (667)
Q Consensus 257 -----~~~~~l~~~~~~~---~~gs~iivTTr~~~ 283 (667)
..+..+...+... ..+..||+||....
T Consensus 97 ~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 97 SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 2222222222211 35778888887654
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.45 E-value=1.5 Score=41.54 Aligned_cols=68 Identities=13% Similarity=0.005 Sum_probs=42.6
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+.+-++|+|++... ..++.+...+......+.+|++|++. .+..........+++.+++.++..+.+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~ 165 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLI 165 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHH
Confidence 45668899998764 34555555554444456666666543 3322222234689999999998777665
No 99
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=92.38 E-value=1.3 Score=46.86 Aligned_cols=146 Identities=17% Similarity=0.177 Sum_probs=80.6
Q ss_pred CCcccccchHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCC
Q 038110 156 KDYEAFESRMSTLNDILGALK---------------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSH 208 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~---------------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~ 208 (667)
..+..+.|+++.+++|.+.+. .|||++|+.+++... ..| +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecch--
Confidence 345567899998888876541 256999999999765 333 22211
Q ss_pred CHHHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCcc----------------cccccCCCcC--CC
Q 038110 209 DIRKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWENL----------------DLLAIGIPHG--ND 269 (667)
Q Consensus 209 ~~~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~----------------~~~~l~~~~~--~~ 269 (667)
..+.... ++ ....... +.+..+.....+|+|||++... .+..+...+. ..
T Consensus 190 --~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 --SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred --HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111110 00 0011111 3333332456899999997531 1111111111 11
Q ss_pred CCCcEEEEecCChhhhhhc----cCCcceEecCCCCHHHHHHHHH--------------HHHHHHhCCcc
Q 038110 270 HKGCKILLTARSEDTLSRK----MDSKQNFSVGILKEEEAWSGEF--------------KWVAKECAGLP 321 (667)
Q Consensus 270 ~~gs~iivTTr~~~va~~~----~~~~~~~~l~~L~~~~s~~Lf~--------------~~i~~~c~GlP 321 (667)
..+.+||.||......... ......+.+...+.++..++|. ..+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCC
Confidence 2356788888764332111 1224578999999999999987 56666666654
No 100
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.23 E-value=0.31 Score=42.73 Aligned_cols=62 Identities=21% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcccEEecCCccccc
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHTLCLYGGVGVV 535 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~~L~L~~~l~~L 535 (667)
.+++|+.+.+.++ . ..++...|.++..|+.+.+.. .+..++.. +..+.+|+.+.+...+..+
T Consensus 33 ~~~~l~~i~~~~~-~--~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~~~~i 95 (129)
T PF13306_consen 33 NCTSLKSINFPNN-L--TSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSNITEI 95 (129)
T ss_dssp T-TT-SEEEESST-T--SCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT-BEE
T ss_pred ccccccccccccc-c--cccceeeeecccccccccccc-cccccccccccccccccccccCccccEE
Confidence 3444555555442 1 344444445554555555543 33333332 3334555555554333333
No 101
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.08 E-value=0.32 Score=47.62 Aligned_cols=184 Identities=13% Similarity=0.035 Sum_probs=107.2
Q ss_pred CCCCccEEEccCCCCcc---ccccHHHHhCCCCCcEEEcCCCCC----ccCCc-------cccCCCcccEEecCC--ccc
Q 038110 470 ECPQLKLFSMPAEKNSF---FAIPHNLFRSMLQVRVLDLTDMNL----LSLPS-------SIGLLTNLHTLCLYG--GVG 533 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~---~~lp~~~~~~l~~Lr~L~L~~~~i----~~lP~-------si~~L~~L~~L~L~~--~l~ 533 (667)
.+..+..++++||.+.. ..+...+ .+-++|++.+++.-.. .++|+ .+-++++|+..+|+. .-.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~i-a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVI-ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHH-hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 46788899999998741 2344444 7788999999887531 14444 456789999999998 222
Q ss_pred ccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-Cc-------------CCCCCCeeEEEecCccCCCc-----cccc
Q 038110 534 VVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GL-------------FFEKPERYKILTGHRWSRGF-----YRSS 594 (667)
Q Consensus 534 ~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~-------------~l~~L~~l~~~~~~~~~~~~-----~~~~ 594 (667)
..| .....-|.+-+.|.||.+++|.+..+..+ |+ +-+.|+.+....+.-.+.+. ....
T Consensus 107 ~~~---e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 107 EFP---EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred ccc---hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 233 00013457778999999999988765443 22 44556666544333222211 1112
Q ss_pred ccccceEEeecCccccch-H--HHH--HHhhhcceeecccccc--ccccccchhhhhccCCCccEEEeecCC
Q 038110 595 NKSYRSFRIDLDANVRLK-D--RLV--VQLRGIEELSLAGLLD--QDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 595 ~~~l~~l~l~~~~~~~~~-~--~~~--~~l~~L~~L~L~~~~~--~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
...++.+.+..|.+..-- . ... ...++|+.|+|+.|.- .+...+-..+ ...++|++|.+.+|-
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al--~~W~~lrEL~lnDCl 253 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL--CEWNLLRELRLNDCL 253 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh--cccchhhhccccchh
Confidence 234555555543322110 0 111 2236999999999821 1222233344 566779999998884
No 102
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.86 E-value=1.5 Score=49.22 Aligned_cols=83 Identities=11% Similarity=0.038 Sum_probs=53.6
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|+|++... ...+.+...+.....+.++|++|.+. .+..........+++.+++.++....+.
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 56678999999865 34555554444434456777766553 3322222344689999999998877665
Q ss_pred ------HHHHHHhCCcchHHH
Q 038110 311 ------KWVAKECAGLPVSIV 325 (667)
Q Consensus 311 ------~~i~~~c~GlPLai~ 325 (667)
..|++.++|.+-.+.
T Consensus 197 id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 197 ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 568888888764443
No 103
>PRK04195 replication factor C large subunit; Provisional
Probab=91.77 E-value=1.9 Score=47.63 Aligned_cols=148 Identities=14% Similarity=0.033 Sum_probs=82.4
Q ss_pred CcccccchHHHHHHHHHhcC------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 038110 157 DYEAFESRMSTLNDILGALK------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIA 218 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 218 (667)
....++|.++.++.+.+|+. .||||+|+.+.++.. |+ .+-++.+...+. .....++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 34567899988888887763 246999999999764 33 223344433222 2233333
Q ss_pred HHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCccc------ccccCCCcCCCCCCcEEEEecCChh-hhh-hccC
Q 038110 219 DKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENLD------LLAIGIPHGNDHKGCKILLTARSED-TLS-RKMD 290 (667)
Q Consensus 219 ~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~~------~~~l~~~~~~~~~gs~iivTTr~~~-va~-~~~~ 290 (667)
....... .+...++-+||+|+++.... +..+...+. ..+..||+|+.+.. +.. ....
T Consensus 86 ~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 86 GEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred HHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhc
Confidence 2221110 01112568999999986422 333333332 22344666664432 211 1122
Q ss_pred CcceEecCCCCHHHHHHHHH---------------HHHHHHhCCcchHHH
Q 038110 291 SKQNFSVGILKEEEAWSGEF---------------KWVAKECAGLPVSIV 325 (667)
Q Consensus 291 ~~~~~~l~~L~~~~s~~Lf~---------------~~i~~~c~GlPLai~ 325 (667)
....+.+.+++.++....+. ..|++.++|-.-.+.
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 34578999999988776665 677777777654443
No 104
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.72 E-value=10 Score=44.08 Aligned_cols=150 Identities=15% Similarity=0.046 Sum_probs=84.9
Q ss_pred cccccchHHHHHHHHHhcCC-------------------CCcHHHHHHHHHhcc---CCCCC--EEEEEEeCCCCCHHHH
Q 038110 158 YEAFESRMSTLNDILGALKN-------------------PDTTLAKEVAWKAEN---DKLFD--QAVFAEVSQSHDIRKI 213 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~-------------------~~TtLa~~vy~~~~~---~~~F~--~~~wv~vs~~~~~~~i 213 (667)
+..+.||++++++|...|.. |||+.++.|.+.... +.... ..++|....-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45678999999999876632 459999999876531 12222 2556665665678889
Q ss_pred HHHHHHHhCCCCCCC--ChhHHHH-HHHHHhc--CCeEEEEEeCCCCcc-----cccccCCCcCCCCCCcEEEE--ecCC
Q 038110 214 QGEIADKLGLTFHEE--SESGRAS-LCNQLKK--NKTILMILDNIWENL-----DLLAIGIPHGNDHKGCKILL--TARS 281 (667)
Q Consensus 214 ~~~i~~~l~~~~~~~--~~~~~~~-l~~~L~~--~kr~LlVLDdvw~~~-----~~~~l~~~~~~~~~gs~iiv--TTr~ 281 (667)
+..|.+++....... ....... +...+.. +...+||||+|..-. .+-.+... + ...+++|+| +|..
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecCc
Confidence 999999985443221 1122222 4544421 223589999997542 11111111 1 124556554 3332
Q ss_pred hhhhh-------hccCCcceEecCCCCHHHHHHHHH
Q 038110 282 EDTLS-------RKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 282 ~~va~-------~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
.+... ..++ ...+...+.+.++-.+++.
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk 946 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIK 946 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHH
Confidence 22111 0111 1235668899999888887
No 105
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.61 E-value=0.25 Score=54.45 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=85.8
Q ss_pred cccccchHHHHHHHHHhcCC---------------CCcHHHHHHHHHhccCCCCCEEEEEEeCC-------CCCHHHHHH
Q 038110 158 YEAFESRMSTLNDILGALKN---------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQ-------SHDIRKIQG 215 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~---------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~-------~~~~~~i~~ 215 (667)
...++|.+..++.+..++.. ||||+|+.+.+.......+...+|+|.+- ..|+..+
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el-- 90 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI-- 90 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe--
Confidence 44577877777777665432 46999999998765333333344443321 1111000
Q ss_pred HHHHHhCCCCCCCChhHHHH-HHHHHh----cCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecC-Chhhhhh
Q 038110 216 EIADKLGLTFHEESESGRAS-LCNQLK----KNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTAR-SEDTLSR 287 (667)
Q Consensus 216 ~i~~~l~~~~~~~~~~~~~~-l~~~L~----~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr-~~~va~~ 287 (667)
... .....+... +.+.+. .+++-++|+|+++.. ..++.+...+........+|++|. ...+...
T Consensus 91 ------~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 91 ------DAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred ------ccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 000 001111111 322221 145678999999865 446666555544444555555554 4444322
Q ss_pred ccCCcceEecCCCCHHHHHHHHH---------------HHHHHHhCCcch
Q 038110 288 KMDSKQNFSVGILKEEEAWSGEF---------------KWVAKECAGLPV 322 (667)
Q Consensus 288 ~~~~~~~~~l~~L~~~~s~~Lf~---------------~~i~~~c~GlPL 322 (667)
.......+++.+++.++....+. ..|++.++|.+-
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR 212 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMR 212 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 23334689999999999988775 567777777663
No 106
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.28 E-value=4.3 Score=42.69 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=40.0
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChh-hhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSED-TLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~-va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+++-++|+|++... ...+.+...+......+.+|++|.+.. +..........+++.++++++....+.
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~ 186 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLK 186 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHH
Confidence 34458889998654 345555444443344566666665443 222222233578889999888766654
No 107
>PRK08727 hypothetical protein; Validated
Probab=91.28 E-value=1.1 Score=44.00 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=70.8
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.|||+|++.+++...- +....+++++.+ ....+. ...+.+. +--+|||||+...
T Consensus 52 ~GKThL~~a~~~~~~~--~~~~~~y~~~~~------~~~~~~----------------~~~~~l~--~~dlLiIDDi~~l 105 (233)
T PRK08727 52 TGKTHLALALCAAAEQ--AGRSSAYLPLQA------AAGRLR----------------DALEALE--GRSLVALDGLESI 105 (233)
T ss_pred CCHHHHHHHHHHHHHH--cCCcEEEEeHHH------hhhhHH----------------HHHHHHh--cCCEEEEeCcccc
Confidence 4789999999987652 233556665322 111111 1222333 3469999999754
Q ss_pred c---cccc-cCCCcCC-CCCCcEEEEecCChhhh--------hhccCCcceEecCCCCHHHHHHHHHHHHHHHhCCcchH
Q 038110 257 L---DLLA-IGIPHGN-DHKGCKILLTARSEDTL--------SRKMDSKQNFSVGILKEEEAWSGEFKWVAKECAGLPVS 323 (667)
Q Consensus 257 ~---~~~~-l~~~~~~-~~~gs~iivTTr~~~va--------~~~~~~~~~~~l~~L~~~~s~~Lf~~~i~~~c~GlPLa 323 (667)
. .|.. +...+.. ..+|..||+|++...-. .........+++++++.++-..++.+.... .|+++.
T Consensus 106 ~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~--~~l~l~ 183 (233)
T PRK08727 106 AGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR--RGLALD 183 (233)
T ss_pred cCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH--cCCCCC
Confidence 2 2322 1111111 12466799999863221 011223458899999999988887643333 366665
Q ss_pred HHHHHHHHc
Q 038110 324 IVTVSRALR 332 (667)
Q Consensus 324 i~~~g~~L~ 332 (667)
-.++.-+..
T Consensus 184 ~e~~~~La~ 192 (233)
T PRK08727 184 EAAIDWLLT 192 (233)
T ss_pred HHHHHHHHH
Confidence 555555444
No 108
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.27 E-value=3.3 Score=42.72 Aligned_cols=137 Identities=13% Similarity=0.096 Sum_probs=70.3
Q ss_pred cccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCCCCCEEEEEEe--CCCCCHHHHHHHHHHHh
Q 038110 158 YEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDKLFDQAVFAEV--SQSHDIRKIQGEIADKL 221 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~l 221 (667)
...++|+++.++.+..++.. ||||+|+.+.+...... +.. .++.+ +...... ...+.+.++
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~~-~~~~~i~~~ 92 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGID-VIRNKIKEF 92 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccchH-HHHHHHHHH
Confidence 44577888888888887643 45999999988754221 211 22222 2222222 122222221
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecC
Q 038110 222 GLTFHEESESGRASLCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVG 298 (667)
Q Consensus 222 ~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~ 298 (667)
....+ .....+-+|++|++... ...+.+...+......+++|+++... .+..........+++.
T Consensus 93 ~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 93 ARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred HhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 11000 00123568999998654 22334433333333456677766432 2211111223468999
Q ss_pred CCCHHHHHHHHH
Q 038110 299 ILKEEEAWSGEF 310 (667)
Q Consensus 299 ~L~~~~s~~Lf~ 310 (667)
+++.++....+.
T Consensus 160 ~l~~~ei~~~l~ 171 (319)
T PRK00440 160 PLKKEAVAERLR 171 (319)
T ss_pred CCCHHHHHHHHH
Confidence 999988766655
No 109
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.19 E-value=0.17 Score=30.49 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=17.3
Q ss_pred CCCCcEEEcCCCCCccCCcccc
Q 038110 497 MLQVRVLDLTDMNLLSLPSSIG 518 (667)
Q Consensus 497 l~~Lr~L~L~~~~i~~lP~si~ 518 (667)
|++|++|+|++|.++.+|..+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888888888888887643
No 110
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.19 E-value=0.17 Score=30.49 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=17.3
Q ss_pred CCCCcEEEcCCCCCccCCcccc
Q 038110 497 MLQVRVLDLTDMNLLSLPSSIG 518 (667)
Q Consensus 497 l~~Lr~L~L~~~~i~~lP~si~ 518 (667)
|++|++|+|++|.++.+|..+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888888888888887643
No 111
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.00 E-value=0.14 Score=30.92 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=18.4
Q ss_pred CCCCCeEEeecCCCCCCCCCC
Q 038110 549 FPNLTSLELEVNDANTLPRGG 569 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~lP~~~ 569 (667)
|++|++|++++|++..+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999999873
No 112
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.00 E-value=0.14 Score=30.92 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=18.4
Q ss_pred CCCCCeEEeecCCCCCCCCCC
Q 038110 549 FPNLTSLELEVNDANTLPRGG 569 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~lP~~~ 569 (667)
|++|++|++++|++..+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999999873
No 113
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=1.9 Score=45.51 Aligned_cols=95 Identities=22% Similarity=0.249 Sum_probs=69.6
Q ss_pred ccchHHHHHHHHHhcC------------------CCCcHHHHHHHHHhccCC-CCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 038110 161 FESRMSTLNDILGALK------------------NPDTTLAKEVAWKAENDK-LFDQAVFAEVSQSHDIRKIQGEIADKL 221 (667)
Q Consensus 161 ~~gr~~~~~~i~~~l~------------------~~~TtLa~~vy~~~~~~~-~F~~~~wv~vs~~~~~~~i~~~i~~~l 221 (667)
+.+|+++.+++...|. .|||+.++.|........ ..+ .+.|..-......+++.+|++++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHc
Confidence 7799999999987663 357999999999766331 122 78888888889999999999999
Q ss_pred CCCCC-CCChhHHHH-HHHHHhc-CCeEEEEEeCCCCc
Q 038110 222 GLTFH-EESESGRAS-LCNQLKK-NKTILMILDNIWEN 256 (667)
Q Consensus 222 ~~~~~-~~~~~~~~~-l~~~L~~-~kr~LlVLDdvw~~ 256 (667)
+.... +.+..+... +.+.+.. ++.++||||++..-
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 74332 233333333 7777742 68899999999765
No 114
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.59 E-value=2.6 Score=46.75 Aligned_cols=68 Identities=6% Similarity=-0.014 Sum_probs=42.7
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEE-EecCChhhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKIL-LTARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~ii-vTTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+++-++|+|++... ..++.+...+.......++| +||....+..........+++.+++.++....+.
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~ 188 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLK 188 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHH
Confidence 56679999999764 44566655554444455555 4555444442223335689999999988765544
No 115
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.52 E-value=6.1 Score=43.23 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=51.2
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEE-ecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILL-TARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iiv-TTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|+|++..- ...+.+...+........+|+ ||....+..........+++.+++.++....+.
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 45679999999754 344555444433333344444 443344433223344689999999998777665
Q ss_pred ------HHHHHHhCC-cchHHHHHHHH
Q 038110 311 ------KWVAKECAG-LPVSIVTVSRA 330 (667)
Q Consensus 311 ------~~i~~~c~G-lPLai~~~g~~ 330 (667)
..|++.++| ++.|+..+-.+
T Consensus 196 i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 196 IDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 556666644 35555555443
No 116
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.44 E-value=0.01 Score=56.33 Aligned_cols=78 Identities=9% Similarity=-0.021 Sum_probs=39.1
Q ss_pred cceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEec
Q 038110 450 RHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCL 528 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L 528 (667)
...+.|+++.|.+..+-... .+..|..|+++.|.. ..+|.++ +.+..++.+++.+|..+.+|.|+++++|++++++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~--~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQI--KFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhH--hhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 44455555554433322211 234444455554443 4455554 5555555555555555555555555555555555
Q ss_pred CC
Q 038110 529 YG 530 (667)
Q Consensus 529 ~~ 530 (667)
.+
T Consensus 119 k~ 120 (326)
T KOG0473|consen 119 KK 120 (326)
T ss_pred cc
Confidence 54
No 117
>PLN03025 replication factor C subunit; Provisional
Probab=90.21 E-value=3.3 Score=42.96 Aligned_cols=139 Identities=9% Similarity=0.040 Sum_probs=71.3
Q ss_pred cccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCCCCCE-EEEEEeCCCCCHHHHHHHHHHHhC
Q 038110 158 YEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDKLFDQ-AVFAEVSQSHDIRKIQGEIADKLG 222 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~ 222 (667)
...++|.++.++.+..++.. ||||+|+.+.+...- ..|.. .+-+..+...+.. ..+++++...
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHH-HHHHHHHHHH
Confidence 44566777777766665432 569999999887531 12321 2222333332222 2233322221
Q ss_pred CCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecCC
Q 038110 223 LTFHEESESGRASLCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVGI 299 (667)
Q Consensus 223 ~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~~ 299 (667)
..... +..++.-+++||++... ..-+.+...+......+++|++|... .+..........+++.+
T Consensus 90 ~~~~~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~ 157 (319)
T PLN03025 90 QKKVT------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSR 157 (319)
T ss_pred hcccc------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCC
Confidence 10000 00145678999999875 22233333332234456777766543 22111111235789999
Q ss_pred CCHHHHHHHHH
Q 038110 300 LKEEEAWSGEF 310 (667)
Q Consensus 300 L~~~~s~~Lf~ 310 (667)
+++++....+.
T Consensus 158 l~~~~l~~~L~ 168 (319)
T PLN03025 158 LSDQEILGRLM 168 (319)
T ss_pred CCHHHHHHHHH
Confidence 99998877664
No 118
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.19 E-value=1.2 Score=45.86 Aligned_cols=145 Identities=16% Similarity=0.106 Sum_probs=85.4
Q ss_pred ccchHHHHHHHHHhcCC-----------------CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 038110 161 FESRMSTLNDILGALKN-----------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGL 223 (667)
Q Consensus 161 ~~gr~~~~~~i~~~l~~-----------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 223 (667)
+.+|+.....+...++. |||.+.+.+++.... ..+|+++-..|+.+.++..|+.+++.
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~~ 82 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQL 82 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhcc
Confidence 44777777777766643 569999999998852 26899999999999999999999852
Q ss_pred -CCC-CCChh--HHHH-HHHHH------h-cCCeEEEEEeCCCCcccccccCCCc----CC-CCCCcEEEEecCChhhhh
Q 038110 224 -TFH-EESES--GRAS-LCNQL------K-KNKTILMILDNIWENLDLLAIGIPH----GN-DHKGCKILLTARSEDTLS 286 (667)
Q Consensus 224 -~~~-~~~~~--~~~~-l~~~L------~-~~kr~LlVLDdvw~~~~~~~l~~~~----~~-~~~gs~iivTTr~~~va~ 286 (667)
+.. ...+. +... ....+ . .++.++||||++..-.+.+.+.-+. .. .....-+|+++--..-..
T Consensus 83 ~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 83 ADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQ 162 (438)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHH
Confidence 222 11222 1111 11111 1 1468999999998765554431110 00 111123344433322221
Q ss_pred hc--cCCc--ceEecCCCCHHHHHHHHH
Q 038110 287 RK--MDSK--QNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 287 ~~--~~~~--~~~~l~~L~~~~s~~Lf~ 310 (667)
.. +|+. .++....-+.+|-..++.
T Consensus 163 y~~n~g~~~i~~l~fP~Ys~~e~~~Il~ 190 (438)
T KOG2543|consen 163 YLINTGTLEIVVLHFPQYSVEETQVILS 190 (438)
T ss_pred hhcccCCCCceEEecCCCCHHHHHHHHh
Confidence 11 3333 356677778888777765
No 119
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.09 E-value=3.5 Score=46.52 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=50.7
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEE-ecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILL-TARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iiv-TTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
++.=++|||+|... ..++.+...+..-....++|+ ||....+..........+++..++.++....+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568899999875 456666555544334455554 444444442233345689999999998776664
Q ss_pred ------HHHHHHhCCcchH
Q 038110 311 ------KWVAKECAGLPVS 323 (667)
Q Consensus 311 ------~~i~~~c~GlPLa 323 (667)
..|++.++|.+--
T Consensus 203 ie~~AL~~La~~s~GslR~ 221 (618)
T PRK14951 203 AEPQALRLLARAARGSMRD 221 (618)
T ss_pred CCHHHHHHHHHHcCCCHHH
Confidence 4566666665533
No 120
>PF14516 AAA_35: AAA-like domain
Probab=90.03 E-value=17 Score=37.92 Aligned_cols=172 Identities=14% Similarity=0.100 Sum_probs=97.4
Q ss_pred ccchHHHHHHHHHhcCC-------------CCcHHHHHHHHHhccCCCCCEEEEEEeCC----C-CCHHHHHHHHHHH--
Q 038110 161 FESRMSTLNDILGALKN-------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQ----S-HDIRKIQGEIADK-- 220 (667)
Q Consensus 161 ~~gr~~~~~~i~~~l~~-------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~----~-~~~~~i~~~i~~~-- 220 (667)
.++|...-+++.+.+.. |||+|...+.+..+.. .+ .+++++... . .+..++++.+...
T Consensus 13 Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~ 90 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEIS 90 (331)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHHHHHH
Confidence 44666444555555443 5699999999887643 33 466776644 2 2566556555544
Q ss_pred --hCCCCCC--------CChhHHHH-HHHHH-h-cCCeEEEEEeCCCCccc--------ccccCCCcC------CCCCCc
Q 038110 221 --LGLTFHE--------ESESGRAS-LCNQL-K-KNKTILMILDNIWENLD--------LLAIGIPHG------NDHKGC 273 (667)
Q Consensus 221 --l~~~~~~--------~~~~~~~~-l~~~L-~-~~kr~LlVLDdvw~~~~--------~~~l~~~~~------~~~~gs 273 (667)
++.+..- ........ +.+.+ . .+++.+|++|+|..... +..++.-.. ...+=+
T Consensus 91 ~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~ 170 (331)
T PF14516_consen 91 RQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLR 170 (331)
T ss_pred HHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEE
Confidence 4433210 01111112 44443 2 26789999999976421 111111000 001111
Q ss_pred EEEEe-cCChhhh---hhccCCcceEecCCCCHHHHHHHHH-----------HHHHHHhCCcchHHHHHHHHHccC
Q 038110 274 KILLT-ARSEDTL---SRKMDSKQNFSVGILKEEEAWSGEF-----------KWVAKECAGLPVSIVTVSRALRNK 334 (667)
Q Consensus 274 ~iivT-Tr~~~va---~~~~~~~~~~~l~~L~~~~s~~Lf~-----------~~i~~~c~GlPLai~~~g~~L~~k 334 (667)
=|++. |...... ....+....++|++++.+|...|.. +.|...++|.|--+..++..+...
T Consensus 171 li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 171 LILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred EEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 12222 2111111 1123344589999999999999988 888999999999999999999753
No 121
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.87 E-value=0.57 Score=41.00 Aligned_cols=99 Identities=13% Similarity=0.279 Sum_probs=52.5
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccEEecCCcccccCCCCccChhhhcC
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYGGVGVVDGVKNASLEELKH 548 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~~l~~LP~~~~~~~~~l~~ 548 (667)
.+++|+.+.+.. .. ..++...|.++..|+.+.+..+ +..++. .+..+.+|+++.+...+..++. ..+..
T Consensus 10 ~~~~l~~i~~~~-~~--~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~------~~F~~ 79 (129)
T PF13306_consen 10 NCSNLESITFPN-TI--KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGD------NAFSN 79 (129)
T ss_dssp T-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-T------TTTTT
T ss_pred CCCCCCEEEECC-Ce--eEeChhhccccccccccccccc-ccccceeeeeccccccccccccccccccc------ccccc
Confidence 456777777764 22 5677777788888888888775 666655 3556667888888665555552 44666
Q ss_pred CCCCCeEEeecCCCCCCCCCC-cCCCCCCeeEE
Q 038110 549 FPNLTSLELEVNDANTLPRGG-LFFEKPERYKI 580 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~lP~~~-~~l~~L~~l~~ 580 (667)
+++|+.+++..+ +..++... .+. .|+.+.+
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence 778888887654 55666652 233 6666543
No 122
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.31 E-value=2.5 Score=47.81 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=53.0
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEE-EecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKIL-LTARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~ii-vTTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|+|++... ...+.+...+-.-....++| +||....+..........|++.+++.++....+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~ 197 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP 197 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 66779999999865 44555544443333344444 4555555542223335689999999998877664
Q ss_pred ------HHHHHHhCCcchHH
Q 038110 311 ------KWVAKECAGLPVSI 324 (667)
Q Consensus 311 ------~~i~~~c~GlPLai 324 (667)
..|++.++|.+--+
T Consensus 198 ~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 198 FEPRALQLLARAADGSMRDA 217 (647)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 56888888877533
No 123
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.07 E-value=1.2 Score=46.94 Aligned_cols=85 Identities=13% Similarity=-0.004 Sum_probs=57.4
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+.+-++|+||+... ...+.+...+..-..++.+|++|.+. .+..........+.+.+++.++..+++.
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~~ 219 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDD 219 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCHH
Confidence 56678999999765 34455544443333456666666665 3332233445689999999999998887
Q ss_pred --HHHHHHhCCcchHHHHH
Q 038110 311 --KWVAKECAGLPVSIVTV 327 (667)
Q Consensus 311 --~~i~~~c~GlPLai~~~ 327 (667)
..++..++|.|..+..+
T Consensus 220 ~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 220 PRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 26788899999766544
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.02 E-value=6.4 Score=40.65 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=81.7
Q ss_pred CcccccchHHHHHHHHHhcCC---------------CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 038110 157 DYEAFESRMSTLNDILGALKN---------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKL 221 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~~---------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 221 (667)
....++|.+..++.+.+++.. ||||+|+.+++... .. ...++.+. ..+. ..++.+...
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~~---~~~i~~~~-~~~~-~i~~~l~~~ 91 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--AE---VLFVNGSD-CRID-FVRNRLTRF 91 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--cc---ceEeccCc-ccHH-HHHHHHHHH
Confidence 345677888888888877633 45999999988653 11 22333333 1211 111111111
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc---ccccccCCCcCCCCCCcEEEEecCChhhh-hhccCCcceEec
Q 038110 222 GLTFHEESESGRASLCNQLKKNKTILMILDNIWEN---LDLLAIGIPHGNDHKGCKILLTARSEDTL-SRKMDSKQNFSV 297 (667)
Q Consensus 222 ~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~---~~~~~l~~~~~~~~~gs~iivTTr~~~va-~~~~~~~~~~~l 297 (667)
... ..+. +.+-+||+||+... ...+.+...+.....++++|+||....-. .........+.+
T Consensus 92 ~~~-------------~~~~-~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 92 AST-------------VSLT-GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDF 157 (316)
T ss_pred HHh-------------hccc-CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEe
Confidence 000 0011 23457889999754 11222322233334567888888654322 111222346778
Q ss_pred CCCCHHHHHHHHH---HHHHH--HhCCcchHHHHHHHHHc
Q 038110 298 GILKEEEAWSGEF---KWVAK--ECAGLPVSIVTVSRALR 332 (667)
Q Consensus 298 ~~L~~~~s~~Lf~---~~i~~--~c~GlPLai~~~g~~L~ 332 (667)
+..+.++...++. ..+.. +..|.|+.-.++..+..
T Consensus 158 ~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~ 197 (316)
T PHA02544 158 GVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVK 197 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 7888888776665 22222 23688876555555554
No 125
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.64 E-value=3.9 Score=45.72 Aligned_cols=67 Identities=13% Similarity=-0.005 Sum_probs=39.9
Q ss_pred CeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEE-ecCChhhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 244 KTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILL-TARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 244 kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iiv-TTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
++=++|+|++... ..++.+...+........+|+ |+....+..........+++.+++.++....+.
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~ 188 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLK 188 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHH
Confidence 3346999999764 456665554443334455554 444444432223334588999999998776554
No 126
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.42 E-value=3.5 Score=44.75 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=50.6
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEE-EecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKIL-LTARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~ii-vTTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
++.-++|+|++... ..++.+...+.........| .||....+..........|.+.+++.++..+.+.
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~ 199 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ 199 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC
Confidence 56679999999875 55777655554333344444 4555555543333344679999999988776665
Q ss_pred ------HHHHHHhCCcc
Q 038110 311 ------KWVAKECAGLP 321 (667)
Q Consensus 311 ------~~i~~~c~GlP 321 (667)
..|++.++|.+
T Consensus 200 ~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 200 YDQEGLFWIAKKGDGSV 216 (484)
T ss_pred CCHHHHHHHHHHcCChH
Confidence 55666666665
No 127
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=88.20 E-value=0.87 Score=42.68 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=25.8
Q ss_pred ccchHHHHHHHHHhcC-----------------CCCcHHHHHHHHHhccC
Q 038110 161 FESRMSTLNDILGALK-----------------NPDTTLAKEVAWKAEND 193 (667)
Q Consensus 161 ~~gr~~~~~~i~~~l~-----------------~~~TtLa~~vy~~~~~~ 193 (667)
|+||+++.+++...+. .|||+|++.++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999981 24699999999887754
No 128
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=88.15 E-value=8.4 Score=41.23 Aligned_cols=133 Identities=15% Similarity=0.015 Sum_probs=81.5
Q ss_pred CeEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhhh-----hhccCCcceEecCCCCHHHHHHHHH--------
Q 038110 244 KTILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDTL-----SRKMDSKQNFSVGILKEEEAWSGEF-------- 310 (667)
Q Consensus 244 kr~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~va-----~~~~~~~~~~~l~~L~~~~s~~Lf~-------- 310 (667)
++..|+||.|.....|+.....+.+.++. +|++|+-+.... ....|....+.+-||+..|...+-.
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~~~~~ 172 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIEPSKL 172 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccchhHH
Confidence 66899999999999999887777776666 899988887654 2223455689999999999876410
Q ss_pred ---HHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHH-hcC-CCCcCchHHHHHHHHHHhhh--hcccHHHHHHHH
Q 038110 311 ---KWVAKECAGLPVSIVTVSRALRNKSLFEWKDALQQ-LRR-PISTNFKDELKQIFLLIGYT--YVAFIDDLIWYS 380 (667)
Q Consensus 311 ---~~i~~~c~GlPLai~~~g~~L~~k~~~~W~~~l~~-l~~-~~~~~l~~~lk~cfly~s~f--~~i~~~~Li~~W 380 (667)
-+---..||.|-++..-...-+ ..+.-..++.. +.. ....+ +..+|..+.+++.. ..+....+-+.+
T Consensus 173 ~~~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~~Di~~~~~~~~-~~~~k~i~~~l~~~~g~~~s~~~la~~l 246 (398)
T COG1373 173 ELLFEKYLETGGFPESVKADLSEKK--LKEYLDTILKRDIIERGKIEN-ADLMKRILRFLASNIGSPISYSSLAREL 246 (398)
T ss_pred HHHHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHHHHHHHHcCccc-HHHHHHHHHHHHhhcCCccCHHHHHHHH
Confidence 1112357999977654322111 01111122211 111 11112 35677777777666 666666666655
No 129
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.08 E-value=3.9 Score=45.20 Aligned_cols=137 Identities=11% Similarity=0.098 Sum_probs=74.3
Q ss_pred CcccccchHHHHHHHHHhcCC---------------CCcHHHHHHHHHhccCCCC-------------------CEEEEE
Q 038110 157 DYEAFESRMSTLNDILGALKN---------------PDTTLAKEVAWKAENDKLF-------------------DQAVFA 202 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~~---------------~~TtLa~~vy~~~~~~~~F-------------------~~~~wv 202 (667)
.+..++|-+..++.+.+++.. ||||+|+.+.+...-...+ .-.+.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 345677888888888877743 4699999998865422211 112223
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEe-c
Q 038110 203 EVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLT-A 279 (667)
Q Consensus 203 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivT-T 279 (667)
..+....+.++ +++++.+.-.. ..++.-++|+|++... ...+.+...+..-....++|++ |
T Consensus 94 daas~~~v~~i-R~l~~~~~~~p---------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPYAP---------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred cccccCCHHHH-HHHHHHHhhcc---------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 22222222222 22333221110 0256678899999875 4455554444433345655554 4
Q ss_pred CChhhhhhccCCcceEecCCCCHHHHHHHH
Q 038110 280 RSEDTLSRKMDSKQNFSVGILKEEEAWSGE 309 (667)
Q Consensus 280 r~~~va~~~~~~~~~~~l~~L~~~~s~~Lf 309 (667)
....+..........+++.+++.++....+
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l 187 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHC 187 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHH
Confidence 444443222233457889999988765543
No 130
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=87.54 E-value=6.4 Score=46.15 Aligned_cols=79 Identities=10% Similarity=0.084 Sum_probs=49.1
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEE-ecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILL-TARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iiv-TTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|||++... ..++.|...+..-...+.+|+ ||....+..........|++..++.++....+.
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45557889999875 445555555544444555554 544445543333445689999999988766554
Q ss_pred ------HHHHHHhCCcc
Q 038110 311 ------KWVAKECAGLP 321 (667)
Q Consensus 311 ------~~i~~~c~GlP 321 (667)
..|++.++|.+
T Consensus 199 id~eal~lLa~~sgGdl 215 (824)
T PRK07764 199 VEPGVLPLVIRAGGGSV 215 (824)
T ss_pred CCHHHHHHHHHHcCCCH
Confidence 34666777765
No 131
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=87.50 E-value=8.5 Score=41.06 Aligned_cols=85 Identities=13% Similarity=0.011 Sum_probs=53.6
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCC-hhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARS-EDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~-~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++++|++... ...+.+...+.....+..+|++|.+ ..+..........+.+.+++.++....+.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~~~~ 195 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVDPET 195 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCCHHH
Confidence 44557888999875 3344444444333445656665555 44432223334689999999999988775
Q ss_pred -HHHHHHhCCcchHHHHH
Q 038110 311 -KWVAKECAGLPVSIVTV 327 (667)
Q Consensus 311 -~~i~~~c~GlPLai~~~ 327 (667)
..++..++|.|..+..+
T Consensus 196 a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 196 ARRAARASQGHIGRARRL 213 (394)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 35777888888655333
No 132
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=87.28 E-value=2.9 Score=42.86 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=73.3
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.||||||+.+.+..+... ..||..|-.-.-..=.++|+++-... ..+. ++|-.|.+|.|..-
T Consensus 173 ~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~-------------~~l~-krkTilFiDEiHRF 234 (554)
T KOG2028|consen 173 TGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE-------------KSLT-KRKTILFIDEIHRF 234 (554)
T ss_pred CchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH-------------Hhhh-cceeEEEeHHhhhh
Confidence 367999999999877443 44666665443334444555443211 1223 68899999999754
Q ss_pred --ccccccCCCcCCCCCCcEEEE--ecCChhhh--hhccCCcceEecCCCCHHHHHHHHHHHHH
Q 038110 257 --LDLLAIGIPHGNDHKGCKILL--TARSEDTL--SRKMDSKQNFSVGILKEEEAWSGEFKWVA 314 (667)
Q Consensus 257 --~~~~~l~~~~~~~~~gs~iiv--TTr~~~va--~~~~~~~~~~~l~~L~~~~s~~Lf~~~i~ 314 (667)
.+-+. .+|.-.+|+-++| ||.+.+.- ........++-++.|..++-..++.+.|.
T Consensus 235 NksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 235 NKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 23232 3455667887777 77776532 11233456899999999988888774333
No 133
>PTZ00202 tuzin; Provisional
Probab=87.15 E-value=4.4 Score=43.23 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=84.2
Q ss_pred CCcccccchHHHHHHHHHhcCC-----------------CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 038110 156 KDYEAFESRMSTLNDILGALKN-----------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIA 218 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~~-----------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 218 (667)
.+..+|+||+.+...+...|.. |||||++.+..... + .+++.-+. +..++++.|+
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr~LL 330 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLRSVV 330 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHHHHH
Confidence 3456799999999999887742 46999999996543 1 13332223 6799999999
Q ss_pred HHhCCCCCCCChhHHHH-HHHHH----hc-CCeEEEEEeCCCCccccccc---CCCcCCCCCCcEEEEecCChhhh--hh
Q 038110 219 DKLGLTFHEESESGRAS-LCNQL----KK-NKTILMILDNIWENLDLLAI---GIPHGNDHKGCKILLTARSEDTL--SR 287 (667)
Q Consensus 219 ~~l~~~~~~~~~~~~~~-l~~~L----~~-~kr~LlVLDdvw~~~~~~~l---~~~~~~~~~gs~iivTTr~~~va--~~ 287 (667)
.+|+.+.... ..+... |.+.| .. |++.+||+-== +-..+..+ ...+.....-|.|++.--.+.+. ..
T Consensus 331 ~ALGV~p~~~-k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 331 KALGVPNVEA-CGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HHcCCCCccc-HHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcc
Confidence 9999743222 222222 44433 22 67777777522 21222111 01233344456677655544432 11
Q ss_pred ccCCcceEecCCCCHHHHHHHH
Q 038110 288 KMDSKQNFSVGILKEEEAWSGE 309 (667)
Q Consensus 288 ~~~~~~~~~l~~L~~~~s~~Lf 309 (667)
....-.-|.++.++.++|...-
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~ 430 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYT 430 (550)
T ss_pred cCccceeEecCCCCHHHHHHHH
Confidence 1223357888889988887753
No 134
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.50 E-value=4.2 Score=43.47 Aligned_cols=134 Identities=18% Similarity=0.179 Sum_probs=71.7
Q ss_pred CcccccchHHHHHHHHHhc---------------------------CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCC
Q 038110 157 DYEAFESRMSTLNDILGAL---------------------------KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHD 209 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l---------------------------~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~ 209 (667)
.+..+.|+++.++++.+.+ +.|||++|+++.+... .. |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh---
Confidence 3456789999888887643 1256999999998765 22 333321
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCcc------------c----ccccCCCcCC--CC
Q 038110 210 IRKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWENL------------D----LLAIGIPHGN--DH 270 (667)
Q Consensus 210 ~~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~------------~----~~~l~~~~~~--~~ 270 (667)
..+. ....+ . ...... +.+........+|+|||+.... . ...+...+.. ..
T Consensus 199 -~~l~----~~~~g----~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SELV----QKFIG----E-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHHh----Hhhcc----c-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111 11100 0 111111 3333332456899999997531 0 1111111111 12
Q ss_pred CCcEEEEecCChhhhhhcc----CCcceEecCCCCHHHHHHHHH
Q 038110 271 KGCKILLTARSEDTLSRKM----DSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 271 ~gs~iivTTr~~~va~~~~----~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
.+.+||.||........+. .-...+.++..+.++-.++|+
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~ 312 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILK 312 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHH
Confidence 3456777887654332111 123578999999998888875
No 135
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=86.42 E-value=4.9 Score=45.62 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=49.5
Q ss_pred CCeEEEEEeCCCCcc--cccccCCCcCCCCCCcEEEEecCC-hhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWENL--DLLAIGIPHGNDHKGCKILLTARS-EDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~~--~~~~l~~~~~~~~~gs~iivTTr~-~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|+|++.... ..+.+...+..-....++|++|.+ ..+.....+....+.+..++.++....+.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 556789999997642 234443334332334566665544 33332222333578888999998777665
Q ss_pred ------HHHHHHhCCcchHH
Q 038110 311 ------KWVAKECAGLPVSI 324 (667)
Q Consensus 311 ------~~i~~~c~GlPLai 324 (667)
..|++.++|.+--+
T Consensus 198 id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 198 YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred cCHHHHHHHHHHhCCCHHHH
Confidence 67888888877433
No 136
>PRK08116 hypothetical protein; Validated
Probab=86.27 E-value=0.96 Score=45.54 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=51.5
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCC
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWE 255 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~ 255 (667)
+.|||.||.++++....+ -..+++++ ..+++..|........ ......+.+.+. +- =||||||+..
T Consensus 124 GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~----~~~~~~~~~~l~-~~-dlLviDDlg~ 189 (268)
T PRK08116 124 GTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG----KEDENEIIRSLV-NA-DLLILDDLGA 189 (268)
T ss_pred CCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc----cccHHHHHHHhc-CC-CEEEEecccC
Confidence 347899999999987633 33456665 4456666655443211 111222455555 33 3899999953
Q ss_pred --cccccc--cCCCcCC-CCCCcEEEEecCCh
Q 038110 256 --NLDLLA--IGIPHGN-DHKGCKILLTARSE 282 (667)
Q Consensus 256 --~~~~~~--l~~~~~~-~~~gs~iivTTr~~ 282 (667)
..+|.. +..-+.. ...|..+|+||...
T Consensus 190 e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 190 ERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 344532 2111111 12456689998654
No 137
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.20 E-value=6.5 Score=41.88 Aligned_cols=156 Identities=10% Similarity=0.015 Sum_probs=87.1
Q ss_pred CCCcccccchHHHHHHHHHhcCC------------------CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 038110 155 NKDYEAFESRMSTLNDILGALKN------------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGE 216 (667)
Q Consensus 155 ~~~~~~~~gr~~~~~~i~~~l~~------------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 216 (667)
...+....||+.++..+-+|+.. |+|.+...|+.+..-...=-+++.+.--.--....++..
T Consensus 146 t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 146 TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 34456688999999999988743 358889989987652111113344433322356778888
Q ss_pred HHHHhCC-CCCCCChhHHHH-HHHHHhcCC-eEEEEEeCCCCcc--cccccCCCcCCC-CCCcEEEEecCC--hhhh---
Q 038110 217 IADKLGL-TFHEESESGRAS-LCNQLKKNK-TILMILDNIWENL--DLLAIGIPHGND-HKGCKILLTARS--EDTL--- 285 (667)
Q Consensus 217 i~~~l~~-~~~~~~~~~~~~-l~~~L~~~k-r~LlVLDdvw~~~--~~~~l~~~~~~~-~~gs~iivTTr~--~~va--- 285 (667)
|...+.. ........+... +.++.++.+ -||+|||.++.-. .-..+...|-|. -.+||+|+.--- -+..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8877722 112222233333 666665334 6999999987541 112222222222 245665543211 1111
Q ss_pred ----hh-ccCCcceEecCCCCHHHHHHHHH
Q 038110 286 ----SR-KMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 286 ----~~-~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
.. ..-....+...+-+.++-.++|.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~ 335 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQ 335 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHH
Confidence 00 01123467788889999999888
No 138
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.80 E-value=4.5 Score=39.86 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=79.8
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.|||+|++.+++..... -..+.++++..... ....+.+.+. . --+|++||+...
T Consensus 56 ~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~----------------------~~~~~~~~~~-~-~dlliiDdi~~~ 109 (235)
T PRK08084 56 AGRSHLLHAACAELSQR--GRAVGYVPLDKRAW----------------------FVPEVLEGME-Q-LSLVCIDNIECI 109 (235)
T ss_pred CCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh----------------------hhHHHHHHhh-h-CCEEEEeChhhh
Confidence 46799999999876522 23456666532100 0011223332 1 247899999653
Q ss_pred ---ccccccC-CCcCC-CCCC-cEEEEecCChhhh--------hhccCCcceEecCCCCHHHHHHHHHHHHHHHhCCcch
Q 038110 257 ---LDLLAIG-IPHGN-DHKG-CKILLTARSEDTL--------SRKMDSKQNFSVGILKEEEAWSGEFKWVAKECAGLPV 322 (667)
Q Consensus 257 ---~~~~~l~-~~~~~-~~~g-s~iivTTr~~~va--------~~~~~~~~~~~l~~L~~~~s~~Lf~~~i~~~c~GlPL 322 (667)
..|+.-. ..+.. ...| .++|+||+...-. ..-+....+++++++++++-.+++.+....+ |+.+
T Consensus 110 ~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~--~~~l 187 (235)
T PRK08084 110 AGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR--GFEL 187 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc--CCCC
Confidence 3443211 11111 1123 3689998855221 0113344689999999999888876544443 6776
Q ss_pred HHHHHHHHHcc--CChHHHHHHHHHh
Q 038110 323 SIVTVSRALRN--KSLFEWKDALQQL 346 (667)
Q Consensus 323 ai~~~g~~L~~--k~~~~W~~~l~~l 346 (667)
.=.++.-+++. .+...-..+++.+
T Consensus 188 ~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 188 PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 66666666653 3666666666654
No 139
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.69 E-value=8.2 Score=42.30 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=42.2
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEec-CChhhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTA-RSEDTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTT-r~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+++=++|+|++... ...+.+...+..-....++|++| ....+..........+++.+++.++....+.
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~ 185 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLV 185 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHH
Confidence 45568999999764 34555544444434456655544 4455543333445688999999988776655
No 140
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.48 E-value=8.4 Score=43.38 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=54.6
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCC-hhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARS-EDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~-~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-+||+|++... ..++.+...+..-.....+|++|.+ ..+..........+++.+++.++....+.
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~ 197 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD 197 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 56678999999765 4455555444333334555555544 44432222334578999999998876664
Q ss_pred ------HHHHHHhCCcc-hHHHHHHHHH
Q 038110 311 ------KWVAKECAGLP-VSIVTVSRAL 331 (667)
Q Consensus 311 ------~~i~~~c~GlP-Lai~~~g~~L 331 (667)
..|++.++|.+ -|+..+..++
T Consensus 198 id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 198 YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56777777744 5666665544
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=85.28 E-value=3.9 Score=41.58 Aligned_cols=127 Identities=10% Similarity=0.003 Sum_probs=64.4
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCC
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWE 255 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~ 255 (667)
+.||||+|+.+..............|+.++. .+ ++..+.+. +... +.+.++.-..-+|+||++..
T Consensus 68 GTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~----~~~~---~~~~~~~a~~gvL~iDEi~~ 132 (284)
T TIGR02880 68 GTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH----TAPK---TKEILKRAMGGVLFIDEAYY 132 (284)
T ss_pred CCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc----chHH---HHHHHHHccCcEEEEechhh
Confidence 3478999988877554222222224565552 12 22222211 1111 22222212235889999962
Q ss_pred c-----------ccccccCCCcCCCCCCcEEEEecCChhhhh-hcc------CCcceEecCCCCHHHHHHHHHHHHHHHh
Q 038110 256 N-----------LDLLAIGIPHGNDHKGCKILLTARSEDTLS-RKM------DSKQNFSVGILKEEEAWSGEFKWVAKEC 317 (667)
Q Consensus 256 ~-----------~~~~~l~~~~~~~~~gs~iivTTr~~~va~-~~~------~~~~~~~l~~L~~~~s~~Lf~~~i~~~c 317 (667)
. +.++.+...+.....+-+||.+|.....-. ... .....+++++++.+|-..++...+.+.+
T Consensus 133 L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 133 LYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred hccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 2 122333334433444556777665432211 001 1135789999999999999875444433
No 142
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=85.17 E-value=3.6 Score=47.45 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=40.6
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEE--ecCChh--hhhhccCCcceEecCCCCHHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILL--TARSED--TLSRKMDSKQNFSVGILKEEEAWSGEFK 311 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iiv--TTr~~~--va~~~~~~~~~~~l~~L~~~~s~~Lf~~ 311 (667)
+++.+|+|||++.- ..++.+...+ ..|+.+++ ||.+.. +..........+.+++|+.++...++.+
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~ 179 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKR 179 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHH
Confidence 46689999999754 4455554333 34665665 344432 2111122245799999999999998873
No 143
>PRK04132 replication factor C small subunit; Provisional
Probab=84.93 E-value=16 Score=42.85 Aligned_cols=127 Identities=13% Similarity=0.010 Sum_probs=70.3
Q ss_pred cHHHHHHHHHhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc--
Q 038110 180 TTLAKEVAWKAENDKLFD-QAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN-- 256 (667)
Q Consensus 180 TtLa~~vy~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~-- 256 (667)
||+|..+.++.-- +.++ ..+-++.|....+.. .++++..+..... +...+.-++|||++...
T Consensus 580 TT~A~ala~~l~g-~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~-------------~~~~~~KVvIIDEaD~Lt~ 644 (846)
T PRK04132 580 TTAALALARELFG-ENWRHNFLELNASDERGINV-IREKVKEFARTKP-------------IGGASFKIIFLDEADALTQ 644 (846)
T ss_pred HHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC-------------cCCCCCEEEEEECcccCCH
Confidence 8888888876521 1222 256666666444443 3333332211100 00124579999999876
Q ss_pred ccccccCCCcCCCCCCcEEEEecCC-hhhhhhccCCcceEecCCCCHHHHHHHHH---------------HHHHHHhCCc
Q 038110 257 LDLLAIGIPHGNDHKGCKILLTARS-EDTLSRKMDSKQNFSVGILKEEEAWSGEF---------------KWVAKECAGL 320 (667)
Q Consensus 257 ~~~~~l~~~~~~~~~gs~iivTTr~-~~va~~~~~~~~~~~l~~L~~~~s~~Lf~---------------~~i~~~c~Gl 320 (667)
...+.+...+.......++|.+|.+ ..+..........+.+.+++.++-...+. ..|++.|+|.
T Consensus 645 ~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GD 724 (846)
T PRK04132 645 DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGD 724 (846)
T ss_pred HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCC
Confidence 3555555555433345566665554 34432223345689999999887765543 4566666665
Q ss_pred c
Q 038110 321 P 321 (667)
Q Consensus 321 P 321 (667)
+
T Consensus 725 l 725 (846)
T PRK04132 725 M 725 (846)
T ss_pred H
Confidence 5
No 144
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.85 E-value=15 Score=41.65 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=51.6
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEE-ecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILL-TARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iiv-TTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++=++|+|++... ..++.+...+..-..++.+|+ ||+...+..........+++.+++.++....+.
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 44557899998765 445666555544444556554 555555543333445689999999998876664
Q ss_pred ------HHHHHHhCCcchH
Q 038110 311 ------KWVAKECAGLPVS 323 (667)
Q Consensus 311 ------~~i~~~c~GlPLa 323 (667)
..|+..++|-.--
T Consensus 200 i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 200 AEPEALNVIAQKADGGMRD 218 (614)
T ss_pred CCHHHHHHHHHHcCCCHHH
Confidence 5677888886543
No 145
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=84.74 E-value=4.1 Score=39.63 Aligned_cols=154 Identities=17% Similarity=0.133 Sum_probs=82.7
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCC
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWE 255 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~ 255 (667)
+.|||.|.+++++.......=..+++++ ..++...+...+.... ...+.+.+. + -=+|++||+..
T Consensus 44 G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~~-------~~~~~~~~~-~-~DlL~iDDi~~ 108 (219)
T PF00308_consen 44 GLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDGE-------IEEFKDRLR-S-ADLLIIDDIQF 108 (219)
T ss_dssp TSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTTS-------HHHHHHHHC-T-SSEEEEETGGG
T ss_pred CCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHccc-------chhhhhhhh-c-CCEEEEecchh
Confidence 3478999999999865321112355553 5667777776664311 122666665 3 45888999976
Q ss_pred c---ccccc-cCCCcCC-CCCCcEEEEecCChhhh-h-------hccCCcceEecCCCCHHHHHHHHHHHHHHHhCCcch
Q 038110 256 N---LDLLA-IGIPHGN-DHKGCKILLTARSEDTL-S-------RKMDSKQNFSVGILKEEEAWSGEFKWVAKECAGLPV 322 (667)
Q Consensus 256 ~---~~~~~-l~~~~~~-~~~gs~iivTTr~~~va-~-------~~~~~~~~~~l~~L~~~~s~~Lf~~~i~~~c~GlPL 322 (667)
. ..|.. +..-+.. ...|-+||+|+....-. . .......++++++++.++-..++.+...+ .|+++
T Consensus 109 l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~--~~~~l 186 (219)
T PF00308_consen 109 LAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE--RGIEL 186 (219)
T ss_dssp GTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH--TT--S
T ss_pred hcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH--hCCCC
Confidence 5 22322 1111111 13466899999664321 0 11234458999999999988887644443 46666
Q ss_pred HHHHHHHHHcc--CChHHHHHHHHHh
Q 038110 323 SIVTVSRALRN--KSLFEWKDALQQL 346 (667)
Q Consensus 323 ai~~~g~~L~~--k~~~~W~~~l~~l 346 (667)
.-.++--+... .+..+-..+++++
T Consensus 187 ~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 187 PEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp -HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 55555555542 3556655555543
No 146
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=84.08 E-value=15 Score=38.56 Aligned_cols=167 Identities=13% Similarity=0.017 Sum_probs=90.0
Q ss_pred cccccchHHHHHHHHHhcCC---------------CCcHHHHHHHHHhccCC--CCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038110 158 YEAFESRMSTLNDILGALKN---------------PDTTLAKEVAWKAENDK--LFDQAVFAEVSQSHDIRKIQGEIADK 220 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~---------------~~TtLa~~vy~~~~~~~--~F~~~~wv~vs~~~~~~~i~~~i~~~ 220 (667)
...++|.+.....+...+.. ||||+|..+....-... .+... ....++.--...+.|...
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQG 98 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcC
Confidence 44577988888888877643 45999998887654211 01111 011111111222333221
Q ss_pred -------hCCC--CC-----CCChhHHHH-HHHHHh----cCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcE-EEEe
Q 038110 221 -------LGLT--FH-----EESESGRAS-LCNQLK----KNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCK-ILLT 278 (667)
Q Consensus 221 -------l~~~--~~-----~~~~~~~~~-l~~~L~----~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~-iivT 278 (667)
+... .. .....+... +.+++. .+++-++|+|++... ...+.+...+.....+.. |++|
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 1000 00 011122222 455543 256779999999865 334444433333223344 4555
Q ss_pred cCChhhhhhccCCcceEecCCCCHHHHHHHHH-------------HHHHHHhCCcchHHHHH
Q 038110 279 ARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF-------------KWVAKECAGLPVSIVTV 327 (667)
Q Consensus 279 Tr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~-------------~~i~~~c~GlPLai~~~ 327 (667)
++-..+..........+++.+++.++....+. ..++..++|.|..+..+
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55444432222334689999999999988776 36788899999766543
No 147
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=83.84 E-value=11 Score=42.65 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=50.4
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEE-ecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILL-TARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iiv-TTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++=++|+|++... ...+.+...+..-...+++|+ ||....+..........+++..++.++....+.
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 34557899999765 335555444444344566555 544444442223334689999999988776665
Q ss_pred ------HHHHHHhCCcchHHH
Q 038110 311 ------KWVAKECAGLPVSIV 325 (667)
Q Consensus 311 ------~~i~~~c~GlPLai~ 325 (667)
..|++.++|-+.-+.
T Consensus 211 i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 211 VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 456777777664443
No 148
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=83.31 E-value=7.3 Score=42.45 Aligned_cols=124 Identities=12% Similarity=0.035 Sum_probs=68.7
Q ss_pred CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc-
Q 038110 178 PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN- 256 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~- 256 (667)
|||+|++++.+.......=-.+++++ ..++..++...+.... .......+.+. +.-+|||||+...
T Consensus 153 GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-----~~~~~~~~~~~--~~dvLiIDDiq~l~ 219 (450)
T PRK14087 153 GKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-----KEIEQFKNEIC--QNDVLIIDDVQFLS 219 (450)
T ss_pred cHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-----hHHHHHHHHhc--cCCEEEEecccccc
Confidence 56999999999654211112344443 4567777777664311 11112555554 3458999999654
Q ss_pred --ccc-cccCCCcCC-CCCCcEEEEecCChhhh--------hhccCCcceEecCCCCHHHHHHHHHHHHH
Q 038110 257 --LDL-LAIGIPHGN-DHKGCKILLTARSEDTL--------SRKMDSKQNFSVGILKEEEAWSGEFKWVA 314 (667)
Q Consensus 257 --~~~-~~l~~~~~~-~~~gs~iivTTr~~~va--------~~~~~~~~~~~l~~L~~~~s~~Lf~~~i~ 314 (667)
..+ +.+..-+.. ...|..||+|+....-. ..-....-++.+++++.++-..++.+.+.
T Consensus 220 ~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 220 YKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHH
Confidence 122 222222211 12345688887643211 01123345788999999999998874443
No 149
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=82.97 E-value=8.8 Score=42.27 Aligned_cols=147 Identities=15% Similarity=0.172 Sum_probs=77.3
Q ss_pred cCCCcccccchHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHhccCC---CCCEEEEEE
Q 038110 154 SNKDYEAFESRMSTLNDILGALK---------------------------NPDTTLAKEVAWKAENDK---LFDQAVFAE 203 (667)
Q Consensus 154 ~~~~~~~~~gr~~~~~~i~~~l~---------------------------~~~TtLa~~vy~~~~~~~---~F~~~~wv~ 203 (667)
|...+..+.|.+..+++|.+.+. .|||++|+++++.....- .+....|+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 33445667788888888776541 256999999999865221 122344555
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHH----hcCCeEEEEEeCCCCcc---------cc-----cccCCC
Q 038110 204 VSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQL----KKNKTILMILDNIWENL---------DL-----LAIGIP 265 (667)
Q Consensus 204 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L----~~~kr~LlVLDdvw~~~---------~~-----~~l~~~ 265 (667)
++.. +++.. ..+........+.+.. ..++.++|++|+++... +. ..+...
T Consensus 257 v~~~--------eLl~k----yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 257 IKGP--------ELLNK----YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred ccch--------hhccc----ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 4431 11111 0001111111122222 22578999999997531 11 122222
Q ss_pred cCC--CCCCcEEEEecCChhhhhhcc----CCcceEecCCCCHHHHHHHHHHH
Q 038110 266 HGN--DHKGCKILLTARSEDTLSRKM----DSKQNFSVGILKEEEAWSGEFKW 312 (667)
Q Consensus 266 ~~~--~~~gs~iivTTr~~~va~~~~----~~~~~~~l~~L~~~~s~~Lf~~~ 312 (667)
+.. ...+..||.||........+. .-...++++..+.++..++|...
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~ 377 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKY 377 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHH
Confidence 221 113445666776654432111 22346899999999999998643
No 150
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.91 E-value=0.053 Score=51.64 Aligned_cols=83 Identities=11% Similarity=0.117 Sum_probs=72.4
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccChhhhcC
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKH 548 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~ 548 (667)
.+.....|+++.|.. ..+-..+ +.++.|..||++.|.+..+|+.++.+..++.+++.. ..+.+| .++++
T Consensus 40 ~~kr~tvld~~s~r~--vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p-------~s~~k 109 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRL--VNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP-------KSQKK 109 (326)
T ss_pred ccceeeeehhhhhHH--Hhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC-------ccccc
Confidence 678899999998876 4555554 888899999999999999999999999999998887 889999 89999
Q ss_pred CCCCCeEEeecCCC
Q 038110 549 FPNLTSLELEVNDA 562 (667)
Q Consensus 549 L~~L~~L~l~~~~l 562 (667)
++++++++...|.+
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 99999999998864
No 151
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.62 E-value=21 Score=37.79 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEec-CChhhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTA-RSEDTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTT-r~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+++-++++|++... ..++.+...+......+.+|++| ....+..........++..++++++....+.
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLA 177 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHH
Confidence 34557999998654 33555543333323344555544 3333322222334578999999888776654
No 152
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.56 E-value=16 Score=41.48 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=48.0
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEE-ecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILL-TARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iiv-TTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|+|++... ...+.+...+..-...+.+|+ |++...+..........+++.+++.++....+.
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 44567899998765 335555444443334455444 544445433233445689999999988765443
Q ss_pred ------HHHHHHhCCcc
Q 038110 311 ------KWVAKECAGLP 321 (667)
Q Consensus 311 ------~~i~~~c~GlP 321 (667)
..++..++|..
T Consensus 206 I~~eal~~La~~s~Gdl 222 (620)
T PRK14954 206 IDADALQLIARKAQGSM 222 (620)
T ss_pred CCHHHHHHHHHHhCCCH
Confidence 56777777744
No 153
>PRK05642 DNA replication initiation factor; Validated
Probab=82.50 E-value=7 Score=38.43 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=80.4
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.|||.|++.+.+....+ -..+++++..+ +... ...+.+.+. +- =+||+||+...
T Consensus 56 ~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~----------------~~~~~~~~~-~~-d~LiiDDi~~~ 109 (234)
T PRK05642 56 VGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR----------------GPELLDNLE-QY-ELVCLDDLDVI 109 (234)
T ss_pred CCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh----------------hHHHHHhhh-hC-CEEEEechhhh
Confidence 47899999998865422 23466776432 2211 012444444 22 26788999743
Q ss_pred ---ccccc-cCCCcCC-CCCCcEEEEecCChhhhhh--------ccCCcceEecCCCCHHHHHHHHHHHHHHHhCCcchH
Q 038110 257 ---LDLLA-IGIPHGN-DHKGCKILLTARSEDTLSR--------KMDSKQNFSVGILKEEEAWSGEFKWVAKECAGLPVS 323 (667)
Q Consensus 257 ---~~~~~-l~~~~~~-~~~gs~iivTTr~~~va~~--------~~~~~~~~~l~~L~~~~s~~Lf~~~i~~~c~GlPLa 323 (667)
..|+. +...+.. ...|..||+|++...-.-. -.....++++++++.++-..+..++...+ |+++.
T Consensus 110 ~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~--~~~l~ 187 (234)
T PRK05642 110 AGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR--GLHLT 187 (234)
T ss_pred cCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc--CCCCC
Confidence 34533 2222211 1246678888876432110 01223578999999999999887544433 66665
Q ss_pred HHHHHHHHc--cCChHHHHHHHHHh
Q 038110 324 IVTVSRALR--NKSLFEWKDALQQL 346 (667)
Q Consensus 324 i~~~g~~L~--~k~~~~W~~~l~~l 346 (667)
-.++--+++ ..+...-..+++.+
T Consensus 188 ~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 188 DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 555555554 23666666666655
No 154
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.49 E-value=8.4 Score=41.31 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=49.8
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEec-CChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTA-RSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTT-r~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|+|++... ..++.+...+.+....+.+|++| +...+..........+++.++++++....+.
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568899999765 45666655555444566665554 4444432112223578899999888765544
Q ss_pred ------HHHHHHhCCcch
Q 038110 311 ------KWVAKECAGLPV 322 (667)
Q Consensus 311 ------~~i~~~c~GlPL 322 (667)
..++..++|.+-
T Consensus 206 i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 206 VDADALQLIGRKAQGSMR 223 (397)
T ss_pred CCHHHHHHHHHHcCCCHH
Confidence 566777777653
No 155
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.92 E-value=25 Score=39.78 Aligned_cols=162 Identities=9% Similarity=0.062 Sum_probs=83.0
Q ss_pred cccccchHHHHHHHHHhcCC---------------CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 038110 158 YEAFESRMSTLNDILGALKN---------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLG 222 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~---------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 222 (667)
...++|.+..++.+..++.. ||||+|+.+.+.......+. ....++.-...+.|.....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 44577888888777766543 46999999987654211100 0112222233333332211
Q ss_pred CCC---C--CCChhHHHH-HHHHHh----cCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCC-hhhhhhcc
Q 038110 223 LTF---H--EESESGRAS-LCNQLK----KNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARS-EDTLSRKM 289 (667)
Q Consensus 223 ~~~---~--~~~~~~~~~-l~~~L~----~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~-~~va~~~~ 289 (667)
.+. . .....+... +.+.+. .+++-++|+|++... ...+.+...+......+.+|++|.+ ..+.....
T Consensus 89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 110 0 011111111 222221 145678999998754 3455554444333345566655533 33332222
Q ss_pred CCcceEecCCCCHHHHHHHHH---------------HHHHHHhCCcchHHH
Q 038110 290 DSKQNFSVGILKEEEAWSGEF---------------KWVAKECAGLPVSIV 325 (667)
Q Consensus 290 ~~~~~~~l~~L~~~~s~~Lf~---------------~~i~~~c~GlPLai~ 325 (667)
.....+.+..++.++....+. ..+++.++|.+-.+.
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAE 219 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 334578888898887665554 567777877775443
No 156
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=81.88 E-value=18 Score=41.50 Aligned_cols=80 Identities=21% Similarity=0.125 Sum_probs=49.7
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcE-EEEecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCK-ILLTARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~-iivTTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|+|++... ..++.+...+........ |++||+...+..........+++.+++.++....+.
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 55668899999764 456555544433333444 445555555543223334689999999998776554
Q ss_pred ------HHHHHHhCCcch
Q 038110 311 ------KWVAKECAGLPV 322 (667)
Q Consensus 311 ------~~i~~~c~GlPL 322 (667)
..+++.++|-+-
T Consensus 197 id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 197 YEKNALKLIAKLSSGSLR 214 (725)
T ss_pred CCHHHHHHHHHHcCCCHH
Confidence 457777777553
No 157
>COG3899 Predicted ATPase [General function prediction only]
Probab=81.32 E-value=14 Score=43.73 Aligned_cols=88 Identities=11% Similarity=0.099 Sum_probs=63.1
Q ss_pred CCcceEecCCCCHHHHHHHHH--------------HHHHHHhCCcchHHHHHHHHHcc-------CChHHHHHHHHHhcC
Q 038110 290 DSKQNFSVGILKEEEAWSGEF--------------KWVAKECAGLPVSIVTVSRALRN-------KSLFEWKDALQQLRR 348 (667)
Q Consensus 290 ~~~~~~~l~~L~~~~s~~Lf~--------------~~i~~~c~GlPLai~~~g~~L~~-------k~~~~W~~~l~~l~~ 348 (667)
.....+.+.||+..+.-.+.. ..|++|-.|.|+-+.-+-..|.. -+...|..=..++..
T Consensus 209 ~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~ 288 (849)
T COG3899 209 TNITTITLAPLSRADTNQLVAATLGCTKLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI 288 (849)
T ss_pred CceeEEecCcCchhhHHHHHHHHhCCcccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC
Confidence 344689999999999998877 89999999999999888887763 145556544333332
Q ss_pred CC------------CcCchHHHHHHHHHHhhh-hcccHHHHH
Q 038110 349 PI------------STNFKDELKQIFLLIGYT-YVAFIDDLI 377 (667)
Q Consensus 349 ~~------------~~~l~~~lk~cfly~s~f-~~i~~~~Li 377 (667)
.+ .+.+|...+.-.-..|++ -.|+...|-
T Consensus 289 ~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~l~~La 330 (849)
T COG3899 289 LATTDAVVEFLAARLQKLPGTTREVLKAAACIGNRFDLDTLA 330 (849)
T ss_pred chhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCCHHHHH
Confidence 21 234588999999999998 444444333
No 158
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=81.22 E-value=17 Score=37.75 Aligned_cols=84 Identities=11% Similarity=0.015 Sum_probs=53.0
Q ss_pred CeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecCCCCHHHHHHHHH----------
Q 038110 244 KTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVGILKEEEAWSGEF---------- 310 (667)
Q Consensus 244 kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~---------- 310 (667)
++=++|+|++... ...+.+...+-.-..++.+|+||.+. .+..+.......+.+.+++.+++.+.+.
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 185 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESDERE 185 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCChHH
Confidence 3344567999875 44555544443333466677777665 3433333445689999999999877665
Q ss_pred -HHHHHHhCCcchHHHHH
Q 038110 311 -KWVAKECAGLPVSIVTV 327 (667)
Q Consensus 311 -~~i~~~c~GlPLai~~~ 327 (667)
..++..++|.|+.+..+
T Consensus 186 ~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 186 RIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 35677888888755443
No 159
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=81.17 E-value=14 Score=37.36 Aligned_cols=80 Identities=15% Similarity=0.252 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHhccCCCCC----EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHH--HHHHHhcCCeEEEEE
Q 038110 177 NPDTTLAKEVAWKAENDKLFD----QAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRAS--LCNQLKKNKTILMIL 250 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~----~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~--l~~~L~~~kr~LlVL 250 (667)
.|||++++......-....=+ .++-|.....++...+...|+.+++............. +...|+.-+-=+||+
T Consensus 72 nGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLII 151 (302)
T PF05621_consen 72 NGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLII 151 (302)
T ss_pred CcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 488999999997654321111 36667788899999999999999998875544333322 445554434468899
Q ss_pred eCCCCc
Q 038110 251 DNIWEN 256 (667)
Q Consensus 251 Ddvw~~ 256 (667)
|.+.+.
T Consensus 152 DE~H~l 157 (302)
T PF05621_consen 152 DEFHNL 157 (302)
T ss_pred echHHH
Confidence 999774
No 160
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.59 E-value=15 Score=40.88 Aligned_cols=68 Identities=10% Similarity=0.035 Sum_probs=39.8
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEec-CChhhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTA-RSEDTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTT-r~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+++-++|+|++... ...+.+...+........+|++| ..+.+..........+++..++.++....+.
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~ 188 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQ 188 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHH
Confidence 56678999999865 33555544444433455555544 4343331112223578899999888765543
No 161
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=80.34 E-value=0.11 Score=53.80 Aligned_cols=110 Identities=15% Similarity=0.057 Sum_probs=55.1
Q ss_pred CCCCCCeEEeecCC-CCCCCCC-C-cCCCCCCeeEEEecCc---cCCCcccccccccceEEeecCccccch-----HHHH
Q 038110 548 HFPNLTSLELEVND-ANTLPRG-G-LFFEKPERYKILTGHR---WSRGFYRSSNKSYRSFRIDLDANVRLK-----DRLV 616 (667)
Q Consensus 548 ~L~~L~~L~l~~~~-l~~lP~~-~-~~l~~L~~l~~~~~~~---~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~~ 616 (667)
+..+|+.|-+..|+ ++..--. + .+...|+.+.+..... ..+..+......++.+.|+....++-. ....
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 44677777777664 3222111 1 1455566664432221 112222333344555555531111111 1111
Q ss_pred HHhhhcceeeccccccccc-cccchhhhhccCCCccEEEeecCCCC
Q 038110 617 VQLRGIEELSLAGLLDQDI-KNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 617 ~~l~~L~~L~L~~~~~~~~-~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
..+..|+.|.|+++ ..+ +...+.+ ...++|+.+.+.+|.+.
T Consensus 398 c~~~~l~~lEL~n~--p~i~d~~Le~l--~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 398 CSLEGLEVLELDNC--PLITDATLEHL--SICRNLERIELIDCQDV 439 (483)
T ss_pred ccccccceeeecCC--CCchHHHHHHH--hhCcccceeeeechhhh
Confidence 23357888888888 443 3355566 66778888888888654
No 162
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=80.08 E-value=31 Score=38.36 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=48.4
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|+|++... ...+.+...+......+++|++|.+. .+..........+++.+++.++....+.
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568899999765 34455544443334456666666553 3321122234689999999988766654
Q ss_pred ------HHHHHHhCCcch
Q 038110 311 ------KWVAKECAGLPV 322 (667)
Q Consensus 311 ------~~i~~~c~GlPL 322 (667)
..|++.++|.+-
T Consensus 196 i~~~Al~~Ia~~s~GdlR 213 (535)
T PRK08451 196 YEPEALEILARSGNGSLR 213 (535)
T ss_pred CCHHHHHHHHHHcCCcHH
Confidence 456666666663
No 163
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.60 E-value=24 Score=39.78 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=48.5
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEE-EecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKIL-LTARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~ii-vTTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++=++|+|++... ...+.+...+..-.....+| +||....+..........++...++.++..+.+.
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45568899999764 44555554554433455544 4555555543223335689999999988766554
Q ss_pred ------HHHHHHhCCcc
Q 038110 311 ------KWVAKECAGLP 321 (667)
Q Consensus 311 ------~~i~~~c~GlP 321 (667)
..|++.++|-+
T Consensus 197 i~~~al~~Ia~~s~Gdl 213 (584)
T PRK14952 197 VDDAVYPLVIRAGGGSP 213 (584)
T ss_pred CCHHHHHHHHHHcCCCH
Confidence 44666677755
No 164
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=79.31 E-value=9.2 Score=38.39 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=49.0
Q ss_pred CCCCcHHHHHHHHHhccCCCC-CEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChhHH------HH-HHHH
Q 038110 176 KNPDTTLAKEVAWKAENDKLF-DQAVFAEVSQSH-DIRKIQGEIADKLGLT-------FHEESESGR------AS-LCNQ 239 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F-~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~~------~~-l~~~ 239 (667)
+.||||||+.+++..+ .+| +.++++-+.+.. .+.++..++.+.=..+ ..+.....+ +. +.++
T Consensus 79 G~GKTtLa~~i~~~i~--~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEy 156 (274)
T cd01133 79 GVGKTVLIMELINNIA--KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEY 156 (274)
T ss_pred CCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3467999999999877 345 457777777765 4566666665431111 111111111 11 6777
Q ss_pred Hh--cCCeEEEEEeCCCCc
Q 038110 240 LK--KNKTILMILDNIWEN 256 (667)
Q Consensus 240 L~--~~kr~LlVLDdvw~~ 256 (667)
+. .++.+|+++||+-.-
T Consensus 157 fr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 157 FRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHhcCCeEEEEEeChhHH
Confidence 74 289999999998554
No 165
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=79.24 E-value=5.6 Score=42.77 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=60.9
Q ss_pred cccchHHHHHHHHHhcCC------------CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 038110 160 AFESRMSTLNDILGALKN------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHE 227 (667)
Q Consensus 160 ~~~gr~~~~~~i~~~l~~------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 227 (667)
.+++.+...+.++..|.. |||++|+.+++......+|+.+.||++++.++..+++..+--. +... .
T Consensus 176 d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy-~ 253 (459)
T PRK11331 176 DLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGF-R 253 (459)
T ss_pred cccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCe-E
Confidence 355778888888888753 5699999999988766678899999999999888776533110 0000 0
Q ss_pred CChhHHHH-HHHHHh-cCCeEEEEEeCCCCc
Q 038110 228 ESESGRAS-LCNQLK-KNKTILMILDNIWEN 256 (667)
Q Consensus 228 ~~~~~~~~-l~~~L~-~~kr~LlVLDdvw~~ 256 (667)
..+.--.. +...-. .+++++||+|++...
T Consensus 254 ~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 254 RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00000011 111111 246799999999765
No 166
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.19 E-value=26 Score=39.53 Aligned_cols=85 Identities=14% Similarity=0.083 Sum_probs=48.4
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEE-EecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKIL-LTARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~ii-vTTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|+|++... ...+.+...+..-.....+| +||....+..........+++.+++.++....+.
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 44557889999764 33444544443333345555 4555555543223334578888998887765443
Q ss_pred ------HHHHHHhCCcc-hHHHHH
Q 038110 311 ------KWVAKECAGLP-VSIVTV 327 (667)
Q Consensus 311 ------~~i~~~c~GlP-Lai~~~ 327 (667)
..|++.++|.. .|+..+
T Consensus 198 i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 198 ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55666676644 333333
No 167
>PRK12608 transcription termination factor Rho; Provisional
Probab=78.34 E-value=11 Score=39.49 Aligned_cols=78 Identities=9% Similarity=0.199 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHhccCCCCCE-EEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCChhHH------HH-HHHHH-hcCCeEE
Q 038110 178 PDTTLAKEVAWKAENDKLFDQ-AVFAEVSQS-HDIRKIQGEIADKLGLTFHEESESGR------AS-LCNQL-KKNKTIL 247 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~~-~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~~~~------~~-l~~~L-~~~kr~L 247 (667)
|||||++.+.+..... +=+. ++|+.+.+. -.+.++.+.+...+.....+...... .. +.+++ ..+++++
T Consensus 145 GKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVV 223 (380)
T PRK12608 145 GKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVV 223 (380)
T ss_pred CHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 5799999999876532 3345 578788764 47888999888877654332222221 11 33333 2489999
Q ss_pred EEEeCCCCc
Q 038110 248 MILDNIWEN 256 (667)
Q Consensus 248 lVLDdvw~~ 256 (667)
||+|++..-
T Consensus 224 LvlDsltr~ 232 (380)
T PRK12608 224 ILLDSLTRL 232 (380)
T ss_pred EEEeCcHHH
Confidence 999999653
No 168
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.35 E-value=1.5 Score=26.39 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.5
Q ss_pred CCCcEEEcCCCCCccCCc
Q 038110 498 LQVRVLDLTDMNLLSLPS 515 (667)
Q Consensus 498 ~~Lr~L~L~~~~i~~lP~ 515 (667)
.+|++|+.++|++++||+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468899999999999987
No 169
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=75.22 E-value=49 Score=37.20 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=41.0
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEec-CChhhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTA-RSEDTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTT-r~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+++=++|+|++... ..++.+...+........+|.+| ....+..........++..+++.++-...+.
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~ 188 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLK 188 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHH
Confidence 45568889998765 44666655554444455555554 4344432222334578999999887766554
No 170
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.22 E-value=57 Score=35.95 Aligned_cols=68 Identities=13% Similarity=-0.004 Sum_probs=39.3
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEE-ecCChhhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILL-TARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iiv-TTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+++-++|+|++... ...+.+...+........+|+ ||+...+..........+.+.+++.++....+.
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~ 188 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLK 188 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHH
Confidence 56679999998754 334555444433333445554 444444332222234578999999888765554
No 171
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=75.01 E-value=24 Score=39.73 Aligned_cols=151 Identities=11% Similarity=0.026 Sum_probs=78.8
Q ss_pred CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc-
Q 038110 178 PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN- 256 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~- 256 (667)
|||.|++++.+.......--.+++++ ..+++.++...+... .....++++. + -=+|||||+...
T Consensus 326 GKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~-------~~~~f~~~y~-~-~DLLlIDDIq~l~ 390 (617)
T PRK14086 326 GKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG-------KGDSFRRRYR-E-MDILLVDDIQFLE 390 (617)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc-------cHHHHHHHhh-c-CCEEEEehhcccc
Confidence 57999999998765211112345554 345555555544321 0111444454 2 357889999754
Q ss_pred --ccccc-cCCCcCC-CCCCcEEEEecCChh--hh------hhccCCcceEecCCCCHHHHHHHHHHHHHHHhCCcchHH
Q 038110 257 --LDLLA-IGIPHGN-DHKGCKILLTARSED--TL------SRKMDSKQNFSVGILKEEEAWSGEFKWVAKECAGLPVSI 324 (667)
Q Consensus 257 --~~~~~-l~~~~~~-~~~gs~iivTTr~~~--va------~~~~~~~~~~~l~~L~~~~s~~Lf~~~i~~~c~GlPLai 324 (667)
..|.. +...+.. ...|..|||||+..- .. ..-+...-+++++..+.+.-..++.++..+ .|+.+.=
T Consensus 391 gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~--r~l~l~~ 468 (617)
T PRK14086 391 DKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ--EQLNAPP 468 (617)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh--cCCCCCH
Confidence 22221 1111111 123556888887631 11 112344568999999999888888754433 2555544
Q ss_pred HHHHHHHcc--CChHHHHHHHHH
Q 038110 325 VTVSRALRN--KSLFEWKDALQQ 345 (667)
Q Consensus 325 ~~~g~~L~~--k~~~~W~~~l~~ 345 (667)
.++--+... .+..+-+.++.+
T Consensus 469 eVi~yLa~r~~rnvR~LegaL~r 491 (617)
T PRK14086 469 EVLEFIASRISRNIRELEGALIR 491 (617)
T ss_pred HHHHHHHHhccCCHHHHHHHHHH
Confidence 443333332 244444444443
No 172
>CHL00181 cbbX CbbX; Provisional
Probab=73.80 E-value=11 Score=38.22 Aligned_cols=119 Identities=10% Similarity=-0.008 Sum_probs=59.8
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.||||+|+.++........-....|+.++. .++ .....+. .... ..+.+.....-+|+||++...
T Consensus 70 tGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~----~~~~---~~~~l~~a~ggVLfIDE~~~l 134 (287)
T CHL00181 70 TGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGH----TAPK---TKEVLKKAMGGVLFIDEAYYL 134 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhcc----chHH---HHHHHHHccCCEEEEEccchh
Confidence 478999999987643222222223565552 122 2222111 1111 122222112248899999642
Q ss_pred -----------ccccccCCCcCCCCCCcEEEEecCChhhhh-------hccCCcceEecCCCCHHHHHHHHH
Q 038110 257 -----------LDLLAIGIPHGNDHKGCKILLTARSEDTLS-------RKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 257 -----------~~~~~l~~~~~~~~~gs~iivTTr~~~va~-------~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+.-+.+...+.+...+.+||.++....+.. ........+..++++.++-.+++.
T Consensus 135 ~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~ 206 (287)
T CHL00181 135 YKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAK 206 (287)
T ss_pred ccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHH
Confidence 122233333333344557777776444321 011224578999999998888875
No 173
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=73.01 E-value=28 Score=40.69 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=73.1
Q ss_pred CCcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccC---CCC-CEEEEEEeCCCCCHHHHHHHH
Q 038110 156 KDYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAEND---KLF-DQAVFAEVSQSHDIRKIQGEI 217 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~---~~F-~~~~wv~vs~~~~~~~i~~~i 217 (667)
.....++||+.+++++++.|.. |||++|+.+....... ..+ +.++|.. +...+...
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~a~- 252 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLLAG- 252 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHhhh-
Confidence 3345688999999999997743 5699999999875321 112 3445531 12111110
Q ss_pred HHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCcc--------c---ccccCCCcCCCCCCc-EEEE-ecCCh-
Q 038110 218 ADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWENL--------D---LLAIGIPHGNDHKGC-KILL-TARSE- 282 (667)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~--------~---~~~l~~~~~~~~~gs-~iiv-TTr~~- 282 (667)
....+. -..... +.+.++..++.+|++|++..-. . -+.+...+ ..|. ++|- ||..+
T Consensus 253 -----~~~~g~-~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 253 -----TKYRGD-FEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEY 323 (731)
T ss_pred -----ccccch-HHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHH
Confidence 000011 111122 4444433457899999997431 0 11122222 2333 3444 45411
Q ss_pred ------hhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 283 ------DTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 283 ------~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+-| ....-..+.+..++.++..+++.
T Consensus 324 ~~~~~~d~a--l~rRf~~i~v~~p~~~~~~~il~ 355 (731)
T TIGR02639 324 KNHFEKDRA--LSRRFQKIDVGEPSIEETVKILK 355 (731)
T ss_pred HHHhhhhHH--HHHhCceEEeCCCCHHHHHHHHH
Confidence 111 01122478999999999999987
No 174
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=72.73 E-value=31 Score=36.86 Aligned_cols=68 Identities=12% Similarity=0.158 Sum_probs=38.9
Q ss_pred CCeEEEEEeCCCCcc------------c----ccccCCCcCC--CCCCcEEEEecCChhhhhhc-c---CCcceEecCCC
Q 038110 243 NKTILMILDNIWENL------------D----LLAIGIPHGN--DHKGCKILLTARSEDTLSRK-M---DSKQNFSVGIL 300 (667)
Q Consensus 243 ~kr~LlVLDdvw~~~------------~----~~~l~~~~~~--~~~gs~iivTTr~~~va~~~-~---~~~~~~~l~~L 300 (667)
....+|++|++.... . +..+...+.. ...+-.||+||...+....+ . .-...+.+...
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 567999999976420 0 1111111111 12355788888765543211 1 22356889888
Q ss_pred CHHHHHHHHH
Q 038110 301 KEEEAWSGEF 310 (667)
Q Consensus 301 ~~~~s~~Lf~ 310 (667)
+.++-..+|.
T Consensus 317 ~~~~R~~Il~ 326 (398)
T PTZ00454 317 DRRQKRLIFQ 326 (398)
T ss_pred CHHHHHHHHH
Confidence 8888777775
No 175
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=72.40 E-value=46 Score=36.30 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEec-CChhhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTA-RSEDTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTT-r~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+++-++|+|++... ...+.+...+.....+..+|++| +...+..........+++.++++++....+.
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~ 190 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLA 190 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHH
Confidence 45668899998654 33444444443333455566555 3333322222334578999999988765543
No 176
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=71.86 E-value=13 Score=36.18 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=48.0
Q ss_pred EEEEEeCCCCccccc--ccCCCcCC-CCCCc-EEEEecCChhhhhh-------ccCCcceEecCCCCHHHHHHHHHHHHH
Q 038110 246 ILMILDNIWENLDLL--AIGIPHGN-DHKGC-KILLTARSEDTLSR-------KMDSKQNFSVGILKEEEAWSGEFKWVA 314 (667)
Q Consensus 246 ~LlVLDdvw~~~~~~--~l~~~~~~-~~~gs-~iivTTr~~~va~~-------~~~~~~~~~l~~L~~~~s~~Lf~~~i~ 314 (667)
-+||+||+.....+. .+...+.. ...|. .||+|++....... .......+++.++++++-..++. ++.
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~-~~~ 170 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALK-AAA 170 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHH-HHH
Confidence 478899996542221 22222211 12344 46666665432210 11223688999999986544443 222
Q ss_pred HHhCCcchHHHHHHHHHcc--CChHHHHHHHHHh
Q 038110 315 KECAGLPVSIVTVSRALRN--KSLFEWKDALQQL 346 (667)
Q Consensus 315 ~~c~GlPLai~~~g~~L~~--k~~~~W~~~l~~l 346 (667)
.. .|+++.=.++..+.+. -+..+-..+++.+
T Consensus 171 ~~-~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AE-RGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HH-cCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22 2455544444444431 1445555555543
No 177
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.58 E-value=1.1e+02 Score=31.90 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=87.4
Q ss_pred cCCCcccccchHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCC
Q 038110 154 SNKDYEAFESRMSTLNDILGALK---------------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQ 206 (667)
Q Consensus 154 ~~~~~~~~~gr~~~~~~i~~~l~---------------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~ 206 (667)
|...+..+.|-++.+++|-+... .|||-||++|.|+-... | +.|..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----Irvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEecc
Confidence 44556778899998888876652 14599999999977633 4 44433
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCcc----------------cccccCCCcCC-
Q 038110 207 SHDIRKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWENL----------------DLLAIGIPHGN- 268 (667)
Q Consensus 207 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~----------------~~~~l~~~~~~- 268 (667)
+ ++++.--++ ...... +.+.-++.....|.+|.++... ..-++...+..
T Consensus 219 S--------ElVqKYiGE-----GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 219 S--------ELVQKYIGE-----GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred H--------HHHHHHhcc-----chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 2 122111110 001111 4444444667888888775320 01111111211
Q ss_pred -CCCCcEEEEecCChhhhhhc----cCCcceEecCCCCHHHHHHHHH--------------HHHHHHhCCcc----hHHH
Q 038110 269 -DHKGCKILLTARSEDTLSRK----MDSKQNFSVGILKEEEAWSGEF--------------KWVAKECAGLP----VSIV 325 (667)
Q Consensus 269 -~~~gs~iivTTr~~~va~~~----~~~~~~~~l~~L~~~~s~~Lf~--------------~~i~~~c~GlP----Lai~ 325 (667)
....-|||..|...++...+ -.-+..++++.-+.+.=.++|+ +.+++.|.|.- -|+.
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAIC 365 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHH
Confidence 12345899988887765211 1223577887555555566777 77777777764 3445
Q ss_pred HHHHHHc
Q 038110 326 TVSRALR 332 (667)
Q Consensus 326 ~~g~~L~ 332 (667)
+=|+++.
T Consensus 366 tEAGm~A 372 (406)
T COG1222 366 TEAGMFA 372 (406)
T ss_pred HHHhHHH
Confidence 5555553
No 178
>COG3903 Predicted ATPase [General function prediction only]
Probab=71.10 E-value=3.6 Score=43.09 Aligned_cols=157 Identities=22% Similarity=0.177 Sum_probs=97.3
Q ss_pred hcCCCCcHHHHHHHHHhccCCCCCE-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeC
Q 038110 174 ALKNPDTTLAKEVAWKAENDKLFDQ-AVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDN 252 (667)
Q Consensus 174 ~l~~~~TtLa~~vy~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDd 252 (667)
.+..+|||++-.+-. .. ..|.. +++|....--|...+.-.....++...... +.....+..+.. ++|.++|+||
T Consensus 22 ~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g-~~~~~~~~~~~~-~rr~llvldn 96 (414)
T COG3903 22 AGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG-DSAVDTLVRRIG-DRRALLVLDN 96 (414)
T ss_pred cCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccc-hHHHHHHHHHHh-hhhHHHHhcC
Confidence 345578999999888 44 55855 555655444455555555455455433221 111112566666 7899999999
Q ss_pred CCCc-ccccccCCCcCCCCCCcEEEEecCChhhhhhccCCcceEecCCCCHH-HHHHHHH--------------------
Q 038110 253 IWEN-LDLLAIGIPHGNDHKGCKILLTARSEDTLSRKMDSKQNFSVGILKEE-EAWSGEF-------------------- 310 (667)
Q Consensus 253 vw~~-~~~~~l~~~~~~~~~gs~iivTTr~~~va~~~~~~~~~~~l~~L~~~-~s~~Lf~-------------------- 310 (667)
--+. ..-..+...+-.+...-.|+.|+|.... ......+.+..|+.- ++-++|.
T Consensus 97 cehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v 172 (414)
T COG3903 97 CEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAV 172 (414)
T ss_pred cHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHH
Confidence 7543 1111111222233334468888887543 234456777777765 6788877
Q ss_pred HHHHHHhCCcchHHHHHHHHHccCChHHH
Q 038110 311 KWVAKECAGLPVSIVTVSRALRNKSLFEW 339 (667)
Q Consensus 311 ~~i~~~c~GlPLai~~~g~~L~~k~~~~W 339 (667)
.+|.++..|.|++|...++..+.....+-
T Consensus 173 ~~icr~ldg~~laielaaarv~sl~~~~i 201 (414)
T COG3903 173 AEICRRLDGIPLAIELAAARVRSLSPDEI 201 (414)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCHHHH
Confidence 88999999999999999998886644443
No 179
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.98 E-value=84 Score=35.82 Aligned_cols=83 Identities=13% Similarity=0.037 Sum_probs=48.4
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEE-ecCChhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILL-TARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iiv-TTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|+|++... ..++.+...+..-.....+|+ |+.-..+..........+++..++.++....+.
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45568899999865 446666555543333444444 443333332222334578888888887655443
Q ss_pred ------HHHHHHhCCcchHHH
Q 038110 311 ------KWVAKECAGLPVSIV 325 (667)
Q Consensus 311 ------~~i~~~c~GlPLai~ 325 (667)
..|++.++|.+..+.
T Consensus 200 is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 200 IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 566777877665443
No 180
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=70.96 E-value=25 Score=37.79 Aligned_cols=120 Identities=12% Similarity=0.070 Sum_probs=64.2
Q ss_pred CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 038110 178 PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENL 257 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~ 257 (667)
|||+||+++++....+..=-.+++++ ..++..++...+... ......+.++ + .=+|||||+....
T Consensus 148 GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-------~~~~~~~~~~-~-~dlLiiDDi~~l~ 212 (405)
T TIGR00362 148 GKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN-------KMEEFKEKYR-S-VDLLLIDDIQFLA 212 (405)
T ss_pred cHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-------CHHHHHHHHH-h-CCEEEEehhhhhc
Confidence 57999999999876321012355554 344555666555421 1112455554 2 3488999997531
Q ss_pred ---cc-cccCCCcCC-CCCCcEEEEecCChhhh-h-------hccCCcceEecCCCCHHHHHHHHHHH
Q 038110 258 ---DL-LAIGIPHGN-DHKGCKILLTARSEDTL-S-------RKMDSKQNFSVGILKEEEAWSGEFKW 312 (667)
Q Consensus 258 ---~~-~~l~~~~~~-~~~gs~iivTTr~~~va-~-------~~~~~~~~~~l~~L~~~~s~~Lf~~~ 312 (667)
.+ +.+...+.. ...|..||+||....-. . ..+.....+.+++.+.++-..++.+.
T Consensus 213 ~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 213 GKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 11 112111111 12345678877642211 0 11222347889999999888877633
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=70.84 E-value=1.1 Score=41.67 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.4
Q ss_pred cCCCCcHHHHHHHHHhccC-CCCCEEEE
Q 038110 175 LKNPDTTLAKEVAWKAEND-KLFDQAVF 201 (667)
Q Consensus 175 l~~~~TtLa~~vy~~~~~~-~~F~~~~w 201 (667)
-+.||||||+.+++..... -+||..+|
T Consensus 10 ~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 10 GGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 3568999999999987765 46777775
No 182
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=70.41 E-value=95 Score=32.04 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=52.8
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChhhhhhccCCcceEecCCCCHHHHHHHHH----------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF---------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~---------- 310 (667)
+++=++|+|++... ...+.+...+-.-.++--|++|+.-..+..+.......+++.++++++..+.+.
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~ 202 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNI 202 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchh
Confidence 56678889998765 334444333322223334445555555544344455789999999999988777
Q ss_pred --HHHHHHhCCcchHHHH
Q 038110 311 --KWVAKECAGLPVSIVT 326 (667)
Q Consensus 311 --~~i~~~c~GlPLai~~ 326 (667)
..++..++|.|..+..
T Consensus 203 ~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 203 NFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 2567788888865544
No 183
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=69.56 E-value=24 Score=38.18 Aligned_cols=39 Identities=8% Similarity=0.061 Sum_probs=26.6
Q ss_pred CcEEEEecCChhhhhhcc----CCcceEecCCCCHHHHHHHHH
Q 038110 272 GCKILLTARSEDTLSRKM----DSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 272 gs~iivTTr~~~va~~~~----~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+-+||+||...+....+. .....+++...+.++-.++|.
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~ 364 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFE 364 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHH
Confidence 557888887665442221 123578899999988888876
No 184
>CHL00095 clpC Clp protease ATP binding subunit
Probab=68.68 E-value=61 Score=38.46 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=72.8
Q ss_pred cccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccC---CCC-CEEEEEEeCCCCCHHHHHHHHHH
Q 038110 158 YEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAEND---KLF-DQAVFAEVSQSHDIRKIQGEIAD 219 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~---~~F-~~~~wv~vs~~~~~~~i~~~i~~ 219 (667)
...++||+++++.++++|.. |||++|+.+....... ... +..+|.- |...++
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~----- 247 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL----- 247 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh-----
Confidence 45678999999999998853 5799999998875311 111 2455531 222221
Q ss_pred HhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCcc---------cccccCCCcCCCCCC-cEEEEecCChhhhh--
Q 038110 220 KLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWENL---------DLLAIGIPHGNDHKG-CKILLTARSEDTLS-- 286 (667)
Q Consensus 220 ~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~---------~~~~l~~~~~~~~~g-s~iivTTr~~~va~-- 286 (667)
.+......-.+... +.+.++..++.+|++|++..-. +...+..+. -..| -++|.+|.......
T Consensus 248 --ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~--l~rg~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 248 --AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPA--LARGELQCIGATTLDEYRKHI 323 (821)
T ss_pred --ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHH--HhCCCcEEEEeCCHHHHHHHH
Confidence 11111111111222 3334343567999999996321 111111111 1222 24444444433210
Q ss_pred ----hccCCcceEecCCCCHHHHHHHHH
Q 038110 287 ----RKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 287 ----~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
........+.+...+.++...++.
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr 351 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILF 351 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHH
Confidence 011223467889999999888876
No 185
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=67.76 E-value=96 Score=34.94 Aligned_cols=68 Identities=12% Similarity=0.020 Sum_probs=39.7
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEE-EecCChhhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKIL-LTARSEDTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~ii-vTTr~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+++-++|+|++... ..++.+...+........+| .||....+..........++..+++.++....+.
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~ 188 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLK 188 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHH
Confidence 56678899999754 44555544443333344444 4554444432222334578889999888766554
No 186
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.03 E-value=4.4 Score=24.51 Aligned_cols=17 Identities=18% Similarity=0.390 Sum_probs=13.1
Q ss_pred CCCCcEEEcCCCCCccC
Q 038110 497 MLQVRVLDLTDMNLLSL 513 (667)
Q Consensus 497 l~~Lr~L~L~~~~i~~l 513 (667)
+++|++|+|+.|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 46788888988888654
No 187
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=66.95 E-value=14 Score=31.96 Aligned_cols=81 Identities=21% Similarity=0.050 Sum_probs=40.9
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCC
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIW 254 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw 254 (667)
+.||||+|+.+....... ....+.+..+........... .................. +.+..+..+..+|++|++.
T Consensus 12 G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~ 88 (148)
T smart00382 12 GSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEIT 88 (148)
T ss_pred CCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 357899999999876632 223555554443322222211 111111111122222223 5555552233999999998
Q ss_pred Ccccc
Q 038110 255 ENLDL 259 (667)
Q Consensus 255 ~~~~~ 259 (667)
.....
T Consensus 89 ~~~~~ 93 (148)
T smart00382 89 SLLDA 93 (148)
T ss_pred ccCCH
Confidence 87443
No 188
>PRK09087 hypothetical protein; Validated
Probab=66.52 E-value=25 Score=34.34 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=38.0
Q ss_pred EEEEeCCCCc----ccccccCCCcCCCCCCcEEEEecCChh---------hhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 247 LMILDNIWEN----LDLLAIGIPHGNDHKGCKILLTARSED---------TLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 247 LlVLDdvw~~----~~~~~l~~~~~~~~~gs~iivTTr~~~---------va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+|++||+... +.+-.+...+ ...|..||+|++... ... ......++++++++.++-.+++.
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~S-Rl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKS-RLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHH-HHhCCceeecCCCCHHHHHHHHH
Confidence 7888999543 1121121111 123667888887432 222 23455789999999999999887
No 189
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=66.41 E-value=48 Score=36.03 Aligned_cols=119 Identities=11% Similarity=0.102 Sum_probs=65.4
Q ss_pred CCCcHHHHHHHHHhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCC
Q 038110 177 NPDTTLAKEVAWKAENDKLFD-QAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWE 255 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~ 255 (667)
.|||+||+++.+.... .+.. .++|++. .+++.++...+.... .....+.+. .+.-+|++||+..
T Consensus 141 ~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~~-------~~~f~~~~~-~~~dvLlIDDi~~ 205 (440)
T PRK14088 141 LGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEGK-------LNEFREKYR-KKVDVLLIDDVQF 205 (440)
T ss_pred CcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhccc-------HHHHHHHHH-hcCCEEEEechhh
Confidence 3579999999998652 2233 3566653 456677766654211 112444443 3345899999974
Q ss_pred c---ccc-cccCCCcCC-CCCCcEEEEecCC-hhhh----hh---ccCCcceEecCCCCHHHHHHHHH
Q 038110 256 N---LDL-LAIGIPHGN-DHKGCKILLTARS-EDTL----SR---KMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 256 ~---~~~-~~l~~~~~~-~~~gs~iivTTr~-~~va----~~---~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
. ..+ +.+...+.. ...|..||+||.. ..-. .. .......+.+++.+.+.-..++.
T Consensus 206 l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 206 LIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred hcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 3 111 112111111 1234568888752 2211 10 12334578899999988888776
No 190
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=66.24 E-value=11 Score=37.08 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=21.5
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEe
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEV 204 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~v 204 (667)
+.|||||+..+..+.. +.|+...+++-
T Consensus 23 GSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 23 GSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred CCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 5789999999998766 77977776654
No 191
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=65.64 E-value=40 Score=36.72 Aligned_cols=135 Identities=6% Similarity=0.005 Sum_probs=71.0
Q ss_pred CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 038110 178 PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENL 257 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~ 257 (667)
|||+||+++.+..... --.+++++ ...+...+...+... .....++.+. +.-+|++||+....
T Consensus 153 GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~-------~~~~f~~~~~--~~dvLiIDDiq~l~ 215 (445)
T PRK12422 153 GKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG-------EMQRFRQFYR--NVDALFIEDIEVFS 215 (445)
T ss_pred CHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc-------hHHHHHHHcc--cCCEEEEcchhhhc
Confidence 5699999999986532 22344554 344555666555321 1111444443 34588899987642
Q ss_pred c--c--cccCCCcCC-CCCCcEEEEecCChh-----hh---hhccCCcceEecCCCCHHHHHHHHHHHHHHHhCCcchHH
Q 038110 258 D--L--LAIGIPHGN-DHKGCKILLTARSED-----TL---SRKMDSKQNFSVGILKEEEAWSGEFKWVAKECAGLPVSI 324 (667)
Q Consensus 258 ~--~--~~l~~~~~~-~~~gs~iivTTr~~~-----va---~~~~~~~~~~~l~~L~~~~s~~Lf~~~i~~~c~GlPLai 324 (667)
. | +.+...+.. ...|..||+||.... +. ..-......+.+.+++.++-..++.+.... .|+++.-
T Consensus 216 ~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~--~~~~l~~ 293 (445)
T PRK12422 216 GKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA--LSIRIEE 293 (445)
T ss_pred CChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH--cCCCCCH
Confidence 1 1 111111110 113556888885421 11 011233468899999999888887644333 2455444
Q ss_pred HHHHHHH
Q 038110 325 VTVSRAL 331 (667)
Q Consensus 325 ~~~g~~L 331 (667)
.++--+.
T Consensus 294 evl~~la 300 (445)
T PRK12422 294 TALDFLI 300 (445)
T ss_pred HHHHHHH
Confidence 4443333
No 192
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=63.77 E-value=74 Score=37.87 Aligned_cols=134 Identities=11% Similarity=0.101 Sum_probs=73.0
Q ss_pred CCcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccC----CCCCEEEE-EEeCC-----CC--C
Q 038110 156 KDYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAEND----KLFDQAVF-AEVSQ-----SH--D 209 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~----~~F~~~~w-v~vs~-----~~--~ 209 (667)
.....++||+.++.++++.|.. ||||+|+.+....... ...+.++| +.++. .+ .
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge 263 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE 263 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchH
Confidence 3455688999999999987643 4699999999875311 11233443 22221 00 1
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcc-------ccc---ccCCCcCCCCCC-cEEEEe
Q 038110 210 IRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENL-------DLL---AIGIPHGNDHKG-CKILLT 278 (667)
Q Consensus 210 ~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~-------~~~---~l~~~~~~~~~g-s~iivT 278 (667)
...-++++++.+ -..+++.+|++|++..-. .-+ .+...+ ..| -++|-|
T Consensus 264 ~e~~lk~ii~e~------------------~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~Iga 322 (852)
T TIGR03345 264 FENRLKSVIDEV------------------KASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTIAA 322 (852)
T ss_pred HHHHHHHHHHHH------------------HhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEEEe
Confidence 111222222211 112467999999997642 111 122222 233 345555
Q ss_pred cCChhhh------hhccCCcceEecCCCCHHHHHHHHH
Q 038110 279 ARSEDTL------SRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 279 Tr~~~va------~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
|...... ......-..+.+.+++.++..+++.
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLR 360 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHH
Confidence 5442210 0011123589999999999999976
No 193
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=63.48 E-value=27 Score=40.70 Aligned_cols=141 Identities=17% Similarity=0.189 Sum_probs=74.4
Q ss_pred CCcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCC---C-CCEEEEEEeCCCCCHHHHHHHH
Q 038110 156 KDYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDK---L-FDQAVFAEVSQSHDIRKIQGEI 217 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~---~-F~~~~wv~vs~~~~~~~i~~~i 217 (667)
.....++||+.++.++++.|.. |||++|+.+........ . .++.+|.. +...+
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l---- 253 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL---- 253 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----
Confidence 3345688999999999997754 57999999997642111 1 24455531 22111
Q ss_pred HHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCc----------ccccccCCCcCCCCCCc-EEEEecCChhhh
Q 038110 218 ADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWEN----------LDLLAIGIPHGNDHKGC-KILLTARSEDTL 285 (667)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~----------~~~~~l~~~~~~~~~gs-~iivTTr~~~va 285 (667)
+ .+............ +.+.++..+..+|++|++..- .+...+..++- ..|. +||-+|......
T Consensus 254 l---aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 254 L---AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFS 328 (758)
T ss_pred h---cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHH
Confidence 1 11111111111222 444443355689999999742 11111222221 2232 344444433321
Q ss_pred h-----h-ccCCcceEecCCCCHHHHHHHHH
Q 038110 286 S-----R-KMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 286 ~-----~-~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
. . ....-..+.++.++.++..+++.
T Consensus 329 ~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~ 359 (758)
T PRK11034 329 NIFEKDRALARRFQKIDITEPSIEETVQIIN 359 (758)
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHH
Confidence 0 0 01122479999999999999987
No 194
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=63.02 E-value=36 Score=37.16 Aligned_cols=116 Identities=10% Similarity=0.037 Sum_probs=63.9
Q ss_pred CCcHHHHHHHHHhccCCCC--CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCC
Q 038110 178 PDTTLAKEVAWKAENDKLF--DQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWE 255 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~ 255 (667)
|||+||+.+.+... ..+ -.+++++ ..++..++...+... ......+.++ +--+|||||+..
T Consensus 160 GKThL~~ai~~~~~--~~~~~~~v~yi~------~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~dlLiiDDi~~ 222 (450)
T PRK00149 160 GKTHLLHAIGNYIL--EKNPNAKVVYVT------SEKFTNDFVNALRNN-------TMEEFKEKYR--SVDVLLIDDIQF 222 (450)
T ss_pred CHHHHHHHHHHHHH--HhCCCCeEEEEE------HHHHHHHHHHHHHcC-------cHHHHHHHHh--cCCEEEEehhhh
Confidence 56999999999876 333 2345554 334455555555321 1112555555 235899999965
Q ss_pred c---ccc-cccCCCcCC-CCCCcEEEEecCChh--hh------hhccCCcceEecCCCCHHHHHHHHH
Q 038110 256 N---LDL-LAIGIPHGN-DHKGCKILLTARSED--TL------SRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 256 ~---~~~-~~l~~~~~~-~~~gs~iivTTr~~~--va------~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
. ..+ +.+...+.. ...|..||+||.... +. ..-......+++++.+.++-..++.
T Consensus 223 l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 223 LAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred hcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 3 111 112111110 123455888776532 11 0112334579999999999888887
No 195
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=62.12 E-value=1.1e+02 Score=29.79 Aligned_cols=53 Identities=19% Similarity=0.071 Sum_probs=34.9
Q ss_pred cEEEEecCChhhhhhccCCc--ceEecCCCCHHHHHHHHH---------------HHHHHHhCCcchHHHH
Q 038110 273 CKILLTARSEDTLSRKMDSK--QNFSVGILKEEEAWSGEF---------------KWVAKECAGLPVSIVT 326 (667)
Q Consensus 273 s~iivTTr~~~va~~~~~~~--~~~~l~~L~~~~s~~Lf~---------------~~i~~~c~GlPLai~~ 326 (667)
+-|=.|||...+.. ..... -..+++..+.+|-.++.. .+|+++|.|-|--+.-
T Consensus 151 TligATTr~g~ls~-pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnr 220 (233)
T PF05496_consen 151 TLIGATTRAGLLSS-PLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANR 220 (233)
T ss_dssp EEEEEESSGCCTSH-CCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHH
T ss_pred eEeeeeccccccch-hHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHH
Confidence 34666999877642 23332 356899999999999887 8999999999954433
No 196
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=61.09 E-value=31 Score=31.60 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=34.7
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChh-hhhhccCCcceEecCCCC
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSED-TLSRKMDSKQNFSVGILK 301 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~-va~~~~~~~~~~~l~~L~ 301 (667)
+++=.+|+||+... +..+.+...+-.-..++++|++|.+.. +..........+.+.+++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 45567889999875 556666666655566788888887765 333333444566666653
No 197
>PF15237 PTRF_SDPR: PTRF/SDPR family
Probab=59.62 E-value=1.7e+02 Score=28.55 Aligned_cols=106 Identities=8% Similarity=0.147 Sum_probs=76.9
Q ss_pred ccccchhhHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 038110 3 KCLAPPTERQFSYLRSYN-NNIENLKAEVGKLKDGTESIQHAVDEAKRKGEEIEKKVEKLLDSGNNAIVEAEKFVGDEAA 81 (667)
Q Consensus 3 ~~~~~~v~~~~~~l~~~~-~~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~l~~~ayd~ed~ld~~~~ 81 (667)
+..+=.++.++.-+.+.. ....+++..-..|+.....||+-|-.....+..+...|...|...|.+.-.+-++-+..+.
T Consensus 4 avtVltLLdKl~~~vD~vQ~~Q~~mE~RQ~emE~sV~~IQ~dl~KLsk~H~~TsnTV~KLLeK~RKVS~~vk~Vr~r~ek 83 (246)
T PF15237_consen 4 AVTVLTLLDKLAGMVDSVQETQQRMEERQREMEGSVKGIQGDLTKLSKSHSTTSNTVNKLLEKTRKVSVNVKEVRERLEK 83 (246)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344445666666555544 4567888888889999999999998888777677889999999999999999887554432
Q ss_pred hhhhhccccccchHHHhHhhhhHHHHHHHHHHHHHcCCCCeeecC
Q 038110 82 ANKQCFKGLCANLKIRIQHSTEAPRQLEAIVKLREAGRFDRISYR 126 (667)
Q Consensus 82 ~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~ 126 (667)
-+.+++++-..=.++-.+.+|..+.+.
T Consensus 84 ------------------Q~~qVkklE~n~~eLL~Rn~FkVlI~Q 110 (246)
T PF15237_consen 84 ------------------QAAQVKKLEANHAELLKRNKFKVLIFQ 110 (246)
T ss_pred ------------------HHHHHhhhhccHHHHhhccCceEEecc
Confidence 234556655555566677788876653
No 198
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=59.50 E-value=1.6e+02 Score=30.51 Aligned_cols=68 Identities=10% Similarity=0.001 Sum_probs=42.4
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+.+=++|+|++... ..-+.+...+..-..++.+|++|.+. .+..........+++.+++.++....+.
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 34456888998654 33444544444444566677666553 3333333445689999999999877665
No 199
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=58.66 E-value=68 Score=38.27 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=71.1
Q ss_pred CcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCCC----CCEEEEEEeCCCCCHHHHHHHHH
Q 038110 157 DYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDKL----FDQAVFAEVSQSHDIRKIQGEIA 218 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~ 218 (667)
....++||+.++.+++..|.. |||++|+.+.....-... ...++|.- ++..++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~a--- 242 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALIA--- 242 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHhh---
Confidence 345688999999999987743 469999999887532111 12334431 1111110
Q ss_pred HHhCCCCCCCChhHHHH-HHHHHh-cCCeEEEEEeCCCCcc----------cccccCCCcCCCCCCc-EEEEecCChhhh
Q 038110 219 DKLGLTFHEESESGRAS-LCNQLK-KNKTILMILDNIWENL----------DLLAIGIPHGNDHKGC-KILLTARSEDTL 285 (667)
Q Consensus 219 ~~l~~~~~~~~~~~~~~-l~~~L~-~~kr~LlVLDdvw~~~----------~~~~l~~~~~~~~~gs-~iivTTr~~~va 285 (667)
+....+ .-..... +.+.+. .+++.+|++|++..-. .-+.++..+ ..|. ++|-+|.....-
T Consensus 243 ---~~~~~g-~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 ---GAKYRG-EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTLDEYR 315 (852)
T ss_pred ---cchhhh-hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcHHHHH
Confidence 000111 1111122 333332 2457999999997431 111222222 2332 344444433221
Q ss_pred -----hh-ccCCcceEecCCCCHHHHHHHHH
Q 038110 286 -----SR-KMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 286 -----~~-~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
.. ....-..+.+...+.++...++.
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~ 346 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILR 346 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHH
Confidence 00 11122467899999999999887
No 200
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=58.39 E-value=22 Score=35.62 Aligned_cols=65 Identities=8% Similarity=0.005 Sum_probs=34.2
Q ss_pred EEEEEeCCCCc----------ccccccCCCcCCCCCCcEEEEecCChhhh-------hhccCCcceEecCCCCHHHHHHH
Q 038110 246 ILMILDNIWEN----------LDLLAIGIPHGNDHKGCKILLTARSEDTL-------SRKMDSKQNFSVGILKEEEAWSG 308 (667)
Q Consensus 246 ~LlVLDdvw~~----------~~~~~l~~~~~~~~~gs~iivTTr~~~va-------~~~~~~~~~~~l~~L~~~~s~~L 308 (667)
-+|++|++..- +..+.+...+......-.+|+++...... .........+++++++.++-.++
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~I 186 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEI 186 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHH
Confidence 48899999752 12233333333333333455555433220 00011134688899998888777
Q ss_pred HH
Q 038110 309 EF 310 (667)
Q Consensus 309 f~ 310 (667)
+.
T Consensus 187 l~ 188 (261)
T TIGR02881 187 AE 188 (261)
T ss_pred HH
Confidence 64
No 201
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=57.02 E-value=2e+02 Score=28.62 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=82.0
Q ss_pred cCCCCcHHHHHHHHHhccCCCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCh--hHHHH--HHHHHhcCCe-EEE
Q 038110 175 LKNPDTTLAKEVAWKAENDKLFDQAVFAEVS-QSHDIRKIQGEIADKLGLTFHEESE--SGRAS--LCNQLKKNKT-ILM 248 (667)
Q Consensus 175 l~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~~~~~~~--~~~~~--l~~~L~~~kr-~Ll 248 (667)
++.|||++++++-....- +.++=|.+. .......+...|+..+..+...... ..... +....+++|| ..+
T Consensus 60 vGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l 135 (269)
T COG3267 60 VGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVL 135 (269)
T ss_pred CCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 456889999955443221 222225554 3667888999999988873332222 11222 5555566888 999
Q ss_pred EEeCCCCc--ccccccCCCcCCCCCC----cEEEEe--c-----CChhhhhhccCCcce-EecCCCCHHHHHHHHH----
Q 038110 249 ILDNIWEN--LDLLAIGIPHGNDHKG----CKILLT--A-----RSEDTLSRKMDSKQN-FSVGILKEEEAWSGEF---- 310 (667)
Q Consensus 249 VLDdvw~~--~~~~~l~~~~~~~~~g----s~iivT--T-----r~~~va~~~~~~~~~-~~l~~L~~~~s~~Lf~---- 310 (667)
++||.... ...+.++....-...+ +++++- + |-..... ....... |++.|++.++.-..+.
T Consensus 136 ~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e-~~~R~~ir~~l~P~~~~~t~~yl~~~Le 214 (269)
T COG3267 136 MVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRE-LEQRIDIRIELPPLTEAETGLYLRHRLE 214 (269)
T ss_pred eehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHh-hhheEEEEEecCCcChHHHHHHHHHHHh
Confidence 99998765 3333332211111111 223221 1 1111111 0111234 9999999997766555
Q ss_pred --------------HHHHHHhCCcchHHHHHHH
Q 038110 311 --------------KWVAKECAGLPVSIVTVSR 329 (667)
Q Consensus 311 --------------~~i~~~c~GlPLai~~~g~ 329 (667)
..|.....|.|.+|.-++.
T Consensus 215 ~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 215 GAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred ccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 6677777788877755443
No 202
>PRK10865 protein disaggregation chaperone; Provisional
Probab=56.49 E-value=98 Score=36.91 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=28.4
Q ss_pred CCcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhc
Q 038110 156 KDYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAE 191 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~ 191 (667)
.....++||+.++.++++.|.. ||||+|+.+.....
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 3345688999999999987743 56999999988753
No 203
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=54.54 E-value=6.3 Score=22.98 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=9.1
Q ss_pred CCCCcEEEcCCCCCc
Q 038110 497 MLQVRVLDLTDMNLL 511 (667)
Q Consensus 497 l~~Lr~L~L~~~~i~ 511 (667)
+++|++|+|++|.|.
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 367788888888765
No 204
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.15 E-value=10 Score=23.18 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=11.4
Q ss_pred CCCcEEEcCCCCCc
Q 038110 498 LQVRVLDLTDMNLL 511 (667)
Q Consensus 498 ~~Lr~L~L~~~~i~ 511 (667)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57889999998775
No 205
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=53.01 E-value=4.9 Score=43.99 Aligned_cols=14 Identities=29% Similarity=0.219 Sum_probs=9.1
Q ss_pred CCCCCCeEEeecCC
Q 038110 548 HFPNLTSLELEVND 561 (667)
Q Consensus 548 ~L~~L~~L~l~~~~ 561 (667)
.+.+|+.|+++++.
T Consensus 241 ~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCG 254 (482)
T ss_pred hcCCcCccchhhhh
Confidence 34667777777665
No 206
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=50.00 E-value=3.1e+02 Score=28.33 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=56.4
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCC-hhhhhhccCCcceEecCCCCHHHHHHHHH-------HH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARS-EDTLSRKMDSKQNFSVGILKEEEAWSGEF-------KW 312 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~-~~va~~~~~~~~~~~l~~L~~~~s~~Lf~-------~~ 312 (667)
+++=.+|+|++... ...+.+...+-.-..++.+|.+|.+ ..+..+.......+.+.+++.++..+.+. ..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~~~~~ 186 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGITVPAY 186 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCchHHH
Confidence 44557788988765 4455554444444455666665554 45544444455689999999999988776 46
Q ss_pred HHHHhCCcchHHHHH
Q 038110 313 VAKECAGLPVSIVTV 327 (667)
Q Consensus 313 i~~~c~GlPLai~~~ 327 (667)
++..++|.|+.+..+
T Consensus 187 ~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 187 ALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHcCCCHHHHHHH
Confidence 777899999876544
No 207
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=49.85 E-value=56 Score=32.16 Aligned_cols=102 Identities=12% Similarity=0.143 Sum_probs=56.8
Q ss_pred CcccccchHHHHHHHHHhc------------------CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCC--CCHHHHHHH
Q 038110 157 DYEAFESRMSTLNDILGAL------------------KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQS--HDIRKIQGE 216 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l------------------~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~ 216 (667)
....++|.+..++.|++-. +.|||++++++.+...-+. . --|.|++. .++.+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---L-RlIev~k~~L~~l~~---- 96 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---L-RLIEVSKEDLGDLPE---- 96 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---c-eEEEECHHHhccHHH----
Confidence 3455778888888887422 2256999999888766432 1 12333321 11111
Q ss_pred HHHHhCCCCCCCChhHHHHHHHHHh-cCCeEEEEEeCCCCc---ccccccCCCcCCC---CC-CcEEEEecCChhhh
Q 038110 217 IADKLGLTFHEESESGRASLCNQLK-KNKTILMILDNIWEN---LDLLAIGIPHGND---HK-GCKILLTARSEDTL 285 (667)
Q Consensus 217 i~~~l~~~~~~~~~~~~~~l~~~L~-~~kr~LlVLDdvw~~---~~~~~l~~~~~~~---~~-gs~iivTTr~~~va 285 (667)
|.+.|. ...||+|.+||+.=+ ..+..++..+..+ .+ .-.|.+||..++..
T Consensus 97 -------------------l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 97 -------------------LLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -------------------HHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 333332 256899999999743 3455565555332 12 23455566666654
No 208
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=48.61 E-value=11 Score=22.54 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=10.6
Q ss_pred CCccEEEeecCCCC
Q 038110 648 SQLKYLQIEGYRGP 661 (667)
Q Consensus 648 ~~L~~L~l~~~~~l 661 (667)
++|+.|+|++|+.+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 67788888888765
No 209
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=48.23 E-value=1.4e+02 Score=35.08 Aligned_cols=75 Identities=9% Similarity=0.022 Sum_probs=40.7
Q ss_pred HHHHHhcCCeEEEEEeCCCCcc--------------cccccCCCcCC--CCCCcEEEEecCChhhhhhc-c---CCcceE
Q 038110 236 LCNQLKKNKTILMILDNIWENL--------------DLLAIGIPHGN--DHKGCKILLTARSEDTLSRK-M---DSKQNF 295 (667)
Q Consensus 236 l~~~L~~~kr~LlVLDdvw~~~--------------~~~~l~~~~~~--~~~gs~iivTTr~~~va~~~-~---~~~~~~ 295 (667)
+.+........+|++|++..-. ....+...+.. ...+--||.||...+....+ . .-...+
T Consensus 538 ~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i 617 (733)
T TIGR01243 538 IFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLI 617 (733)
T ss_pred HHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEE
Confidence 4333333567999999985420 01112112211 12234566677666544211 1 234578
Q ss_pred ecCCCCHHHHHHHHH
Q 038110 296 SVGILKEEEAWSGEF 310 (667)
Q Consensus 296 ~l~~L~~~~s~~Lf~ 310 (667)
.+...+.++-.++|.
T Consensus 618 ~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 618 LVPPPDEEARKEIFK 632 (733)
T ss_pred EeCCcCHHHHHHHHH
Confidence 888888888888875
No 210
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=47.93 E-value=1.6e+02 Score=32.46 Aligned_cols=67 Identities=25% Similarity=0.315 Sum_probs=45.8
Q ss_pred CCeEEEEEeCCCCcccccccCCCcCC-------------CCCCcEEEE--ecCChhhhhhccC----CcceEecCCCCH-
Q 038110 243 NKTILMILDNIWENLDLLAIGIPHGN-------------DHKGCKILL--TARSEDTLSRKMD----SKQNFSVGILKE- 302 (667)
Q Consensus 243 ~kr~LlVLDdvw~~~~~~~l~~~~~~-------------~~~gs~iiv--TTr~~~va~~~~~----~~~~~~l~~L~~- 302 (667)
..--.||+||+..-.+|-.++..|++ -.+|-|.+| ||....|.. .|+ -...|+++.++.
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCccCch
Confidence 45578999999988899888766642 234666544 777777763 333 234788888887
Q ss_pred HHHHHHHH
Q 038110 303 EEAWSGEF 310 (667)
Q Consensus 303 ~~s~~Lf~ 310 (667)
++..+.++
T Consensus 676 ~~~~~vl~ 683 (744)
T KOG0741|consen 676 EQLLEVLE 683 (744)
T ss_pred HHHHHHHH
Confidence 66666665
No 211
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=47.34 E-value=2.2e+02 Score=31.47 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=22.6
Q ss_pred CcEEEEecCChhhhhhc----cCCcceEecCCCCHHHHHHHHH
Q 038110 272 GCKILLTARSEDTLSRK----MDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 272 gs~iivTTr~~~va~~~----~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+-.||.||........+ ..-...+.+...+.++-.++|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILK 235 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHH
Confidence 44566677665422111 1234578888888877777665
No 212
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.82 E-value=5.5 Score=37.61 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=14.9
Q ss_pred CCCCcEEEcCCC-CCccC-CccccCCCcccEEecCC
Q 038110 497 MLQVRVLDLTDM-NLLSL-PSSIGLLTNLHTLCLYG 530 (667)
Q Consensus 497 l~~Lr~L~L~~~-~i~~l-P~si~~L~~L~~L~L~~ 530 (667)
.++|+.|+|++| +|++- -..+..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 345555555554 34421 22344444444444433
No 213
>CHL00176 ftsH cell division protein; Validated
Probab=42.77 E-value=2.4e+02 Score=32.36 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=38.2
Q ss_pred CCeEEEEEeCCCCc------------cc----ccccCCCcCC--CCCCcEEEEecCChhhhhhc-c---CCcceEecCCC
Q 038110 243 NKTILMILDNIWEN------------LD----LLAIGIPHGN--DHKGCKILLTARSEDTLSRK-M---DSKQNFSVGIL 300 (667)
Q Consensus 243 ~kr~LlVLDdvw~~------------~~----~~~l~~~~~~--~~~gs~iivTTr~~~va~~~-~---~~~~~~~l~~L 300 (667)
+..++|+|||+..- .. +..+...+.. ...|-.||.||...+....+ . .-...+.+...
T Consensus 274 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lP 353 (638)
T CHL00176 274 NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLP 353 (638)
T ss_pred CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCC
Confidence 67799999999532 01 2222222211 23355677777665433211 1 12357788888
Q ss_pred CHHHHHHHHH
Q 038110 301 KEEEAWSGEF 310 (667)
Q Consensus 301 ~~~~s~~Lf~ 310 (667)
+.++-.++++
T Consensus 354 d~~~R~~IL~ 363 (638)
T CHL00176 354 DREGRLDILK 363 (638)
T ss_pred CHHHHHHHHH
Confidence 8887777775
No 214
>PRK08181 transposase; Validated
Probab=42.14 E-value=22 Score=35.79 Aligned_cols=63 Identities=17% Similarity=0.100 Sum_probs=35.9
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.|||.||..+.+...- ....++|++ ..+++.++..... +.....+.+.+. +-=||||||+...
T Consensus 117 tGKTHLa~Aia~~a~~--~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 117 GGKSHLAAAIGLALIE--NGWRVLFTR------TTDLVQKLQVARR-------ELQLESAIAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred CcHHHHHHHHHHHHHH--cCCceeeee------HHHHHHHHHHHHh-------CCcHHHHHHHHh--cCCEEEEeccccc
Confidence 4789999999987652 233456664 3455555543311 011112334443 3459999999644
No 215
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=42.03 E-value=71 Score=33.39 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=56.3
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCC-hhhhhhccCCcceEecCCCCHHHHHHHHH-------HH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARS-EDTLSRKMDSKQNFSVGILKEEEAWSGEF-------KW 312 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~-~~va~~~~~~~~~~~l~~L~~~~s~~Lf~-------~~ 312 (667)
+++=++|+|++... ..++.+...+-.-..++.+|.+|.+ ..+..+.......+.+.+++.++..+.+. ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~~~~~~ 210 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGVADADA 210 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCCChHHH
Confidence 45557888999875 4566665555444556665555555 55543333445689999999999988776 45
Q ss_pred HHHHhCCcchHHHHH
Q 038110 313 VAKECAGLPVSIVTV 327 (667)
Q Consensus 313 i~~~c~GlPLai~~~ 327 (667)
.+..++|.|..+..+
T Consensus 211 ~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 211 LLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHcCCCHHHHHHH
Confidence 677888888655433
No 216
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=41.87 E-value=1.3e+02 Score=30.41 Aligned_cols=81 Identities=22% Similarity=0.251 Sum_probs=50.7
Q ss_pred CCCCcHHHHHHHHHhcc--CCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCChhHH------HH-HHH
Q 038110 176 KNPDTTLAKEVAWKAEN--DKLFDQAVFAEVSQSH-DIRKIQGEIADKLGLTF-------HEESESGR------AS-LCN 238 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~--~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~~------~~-l~~ 238 (667)
+.|||+|+..+.+.... +.+-+.++++-+.++. .+.++..++.+.=..+. .+.+...+ +. +.+
T Consensus 79 GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAE 158 (276)
T cd01135 79 GLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAE 158 (276)
T ss_pred CCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 34679999988876541 2335789999998865 56777777665421111 11111111 12 778
Q ss_pred HHhc--CCeEEEEEeCCCCc
Q 038110 239 QLKK--NKTILMILDNIWEN 256 (667)
Q Consensus 239 ~L~~--~kr~LlVLDdvw~~ 256 (667)
++.. +|++|+++||+...
T Consensus 159 yfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 159 YLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHhccCCeEEEEEcChhHH
Confidence 8753 68999999999654
No 217
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=41.33 E-value=1.6e+02 Score=34.53 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=26.0
Q ss_pred CCcccccchHHHHHHHHHhc---------------------------CCCCcHHHHHHHHHhc
Q 038110 156 KDYEAFESRMSTLNDILGAL---------------------------KNPDTTLAKEVAWKAE 191 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l---------------------------~~~~TtLa~~vy~~~~ 191 (667)
..+..+.|.+..+++|.+++ +.||||||+.+.+...
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 34556789888888876654 1256999999998764
No 218
>PRK08939 primosomal protein DnaI; Reviewed
Probab=40.95 E-value=23 Score=36.43 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=50.3
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCC
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWE 255 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~ 255 (667)
+.|||.||.++.+.... ..+ .+.+++++ .++.++-...... ......+.++ +-=||||||+-.
T Consensus 166 G~GKThLa~Aia~~l~~-~g~-~v~~~~~~------~l~~~lk~~~~~~-------~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 166 GVGKSYLLAAIANELAK-KGV-SSTLLHFP------EFIRELKNSISDG-------SVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCCHHHHHHHHHHHHHH-cCC-CEEEEEHH------HHHHHHHHHHhcC-------cHHHHHHHhc--CCCEEEEecCCC
Confidence 34679999999998762 223 35666643 5666665544311 1122334454 457899999975
Q ss_pred c--ccccc--cCCCc-CCC-CCCcEEEEecCC
Q 038110 256 N--LDLLA--IGIPH-GND-HKGCKILLTARS 281 (667)
Q Consensus 256 ~--~~~~~--l~~~~-~~~-~~gs~iivTTr~ 281 (667)
+ ..|.. +...+ ... ..+-.+|+||..
T Consensus 229 e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 229 EQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 4 55643 32222 211 234457777754
No 219
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.29 E-value=3.7e+02 Score=26.59 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=25.0
Q ss_pred CCCcEEEEecCChhhhhhc-c---CCcceEecCCCCHHHHHHHHH
Q 038110 270 HKGCKILLTARSEDTLSRK-M---DSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 270 ~~gs~iivTTr~~~va~~~-~---~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
.+.-+||+.|..-++...+ . ..+..++..+-+++.-.++++
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHH
Confidence 3456888888776665211 1 223456777777766666666
No 220
>PRK10536 hypothetical protein; Provisional
Probab=38.68 E-value=73 Score=31.72 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=24.2
Q ss_pred EEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhh
Q 038110 246 ILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDT 284 (667)
Q Consensus 246 ~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~v 284 (667)
-+||+|...+... ..+...+...+.||+||+|=-..++
T Consensus 178 ~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 178 AVVILDEAQNVTA-AQMKMFLTRLGENVTVIVNGDITQC 215 (262)
T ss_pred CEEEEechhcCCH-HHHHHHHhhcCCCCEEEEeCChhhc
Confidence 3899999987632 3333333444689999987644433
No 221
>PRK06620 hypothetical protein; Validated
Probab=38.66 E-value=1e+02 Score=29.71 Aligned_cols=97 Identities=18% Similarity=0.125 Sum_probs=54.5
Q ss_pred EEEEEeCCCCccc--ccccCCCcCCCCCCcEEEEecCChhhh------hhccCCcceEecCCCCHHHHHHHHHHHHHHHh
Q 038110 246 ILMILDNIWENLD--LLAIGIPHGNDHKGCKILLTARSEDTL------SRKMDSKQNFSVGILKEEEAWSGEFKWVAKEC 317 (667)
Q Consensus 246 ~LlVLDdvw~~~~--~~~l~~~~~~~~~gs~iivTTr~~~va------~~~~~~~~~~~l~~L~~~~s~~Lf~~~i~~~c 317 (667)
-++++||+..-.+ .-.+...+ ...|..||+|++..... ..-.....+++++++++++-..+..+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-- 162 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI-- 162 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH--
Confidence 5788899963211 11111111 13467899988755431 111233458999999999877766544333
Q ss_pred CCcchHHHHHHHHHc--cCChHHHHHHHHHh
Q 038110 318 AGLPVSIVTVSRALR--NKSLFEWKDALQQL 346 (667)
Q Consensus 318 ~GlPLai~~~g~~L~--~k~~~~W~~~l~~l 346 (667)
.|+.+.-.++--++. ..+...-..+++.+
T Consensus 163 ~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 163 SSVTISRQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred cCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 366665555555554 23555555555543
No 222
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.57 E-value=15 Score=34.71 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=24.3
Q ss_pred Hhhhcceeeccccccccccc-cchhhhhccCCCccEEEeecCCC
Q 038110 618 QLRGIEELSLAGLLDQDIKN-FVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 618 ~l~~L~~L~L~~~~~~~~~~-~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
..++|+.|+|++| ..+.+ =+.+| ..++||+.|.|.+-+.
T Consensus 149 ~~~~L~~L~lsgC--~rIT~~GL~~L--~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 149 LAPSLQDLDLSGC--PRITDGGLACL--LKLKNLRRLHLYDLPY 188 (221)
T ss_pred cccchheeeccCC--CeechhHHHHH--HHhhhhHHHHhcCchh
Confidence 3467777777777 43322 24455 6677777777766554
No 223
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=37.40 E-value=73 Score=32.90 Aligned_cols=85 Identities=12% Similarity=-0.013 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCC-hhhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARS-EDTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~-~~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++=++|+|++... ..-+.+...+-.-..++.+|++|.+ ..+..+.......+.+.+++.+++...+.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~~~~~~a 191 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQGVSERAA 191 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcCCChHHH
Confidence 56678899999765 2223333333333346666666654 44443333445688999999999877766
Q ss_pred HHHHHHhCCcchHHHHH
Q 038110 311 KWVAKECAGLPVSIVTV 327 (667)
Q Consensus 311 ~~i~~~c~GlPLai~~~ 327 (667)
..++..++|.|+.+..+
T Consensus 192 ~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 192 QEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHHHHcCCCHHHHHHH
Confidence 36788999999866543
No 224
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=36.97 E-value=91 Score=30.30 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHHhccCCC----CCEEEEEEeCCCCCHHHHHHHHHHHh
Q 038110 176 KNPDTTLAKEVAWKAENDKL----FDQAVFAEVSQSHDIRKIQGEIADKL 221 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l 221 (667)
+.|||+||.++.-....... -..++|++....|+..++. ++++..
T Consensus 29 GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~ 77 (235)
T cd01123 29 GSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERF 77 (235)
T ss_pred CCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHh
Confidence 45889999999755332221 3579999988888765543 344443
No 225
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=35.83 E-value=1.4e+02 Score=32.33 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChhHH------HH-HHHHHh
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSH-DIRKIQGEIADKLGLT-------FHEESESGR------AS-LCNQLK 241 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~~------~~-l~~~L~ 241 (667)
.|||+|+..+..... +.+-+.++++-+.+.. .+.++.+++...=..+ ..+.+...+ +. +.+++.
T Consensus 149 ~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfr 227 (449)
T TIGR03305 149 VGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFR 227 (449)
T ss_pred CChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 367999988876643 2344789999887766 4566666665431111 111111111 12 788886
Q ss_pred c--CCeEEEEEeCCCCc
Q 038110 242 K--NKTILMILDNIWEN 256 (667)
Q Consensus 242 ~--~kr~LlVLDdvw~~ 256 (667)
. ++++|+++||+-.-
T Consensus 228 d~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 228 DDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HhcCCceEEEecChHHH
Confidence 3 79999999999664
No 226
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=35.36 E-value=95 Score=36.30 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHHhcC-----------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 038110 161 FESRMSTLNDILGALK-----------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEI 217 (667)
Q Consensus 161 ~~gr~~~~~~i~~~l~-----------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 217 (667)
++|.+..++.|...+. .|||+||+.+..... ...+.++.++-.+.. .+
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~~ 526 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----TV 526 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----cH
Confidence 5677777776665542 145999999987552 223445544421110 11
Q ss_pred HHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCc
Q 038110 218 ADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~ 256 (667)
..-++.. .+....+... +.+.++....-+|+||++...
T Consensus 527 ~~lig~~-~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 527 SRLIGAP-PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHhcCC-CCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 1112221 1111112222 556665344569999999865
No 227
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=34.88 E-value=13 Score=38.99 Aligned_cols=151 Identities=16% Similarity=0.089 Sum_probs=80.1
Q ss_pred hCCCCCcEEEcCCC-CCccCC-cc-ccCCCcccEEecCC--cccccCCCCccChhhh-cCCCCCCeEEeecCCCCC---C
Q 038110 495 RSMLQVRVLDLTDM-NLLSLP-SS-IGLLTNLHTLCLYG--GVGVVDGVKNASLEEL-KHFPNLTSLELEVNDANT---L 565 (667)
Q Consensus 495 ~~l~~Lr~L~L~~~-~i~~lP-~s-i~~L~~L~~L~L~~--~l~~LP~~~~~~~~~l-~~L~~L~~L~l~~~~l~~---l 565 (667)
..+..|++|+.+++ .++..+ .+ ..+..+|++|-+.+ .+...- ...+ .+.+.|+.|++..+.... +
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~------ft~l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG------FTMLGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh------hhhhhcCChhhhhhcccccceehhhhH
Confidence 56788999999988 444221 22 33567899999987 222211 0112 356789999988775321 1
Q ss_pred CCCCcCCCCCCeeEEEecCc---c---CCCcccccccccceEEeecCccccchHHHH---HHhhhcceeecccccccccc
Q 038110 566 PRGGLFFEKPERYKILTGHR---W---SRGFYRSSNKSYRSFRIDLDANVRLKDRLV---VQLRGIEELSLAGLLDQDIK 636 (667)
Q Consensus 566 P~~~~~l~~L~~l~~~~~~~---~---~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~---~~l~~L~~L~L~~~~~~~~~ 636 (667)
-.--.+.+.|+.+.++.+.. . .+.........+..+.+++... +.++.. ...++|+.++|-.| .+..
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~--i~d~~Le~l~~c~~Leri~l~~~--q~vt 440 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL--ITDATLEHLSICRNLERIELIDC--QDVT 440 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC--chHHHHHHHhhCcccceeeeech--hhhh
Confidence 11112566777776553220 0 0111123334455556665322 222222 22368999999888 3322
Q ss_pred ccc-hhhhhccCCCccEEEee
Q 038110 637 NFV-NELVKVGSSQLKYLQIE 656 (667)
Q Consensus 637 ~~~-~~l~~~~l~~L~~L~l~ 656 (667)
.-+ ..+ ...+|+++...+.
T Consensus 441 k~~i~~~-~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 441 KEAISRF-ATHLPNIKVHAYF 460 (483)
T ss_pred hhhhHHH-HhhCccceehhhc
Confidence 111 112 1567777766554
No 228
>PTZ00185 ATPase alpha subunit; Provisional
Probab=34.39 E-value=2.1e+02 Score=31.70 Aligned_cols=80 Identities=10% Similarity=0.153 Sum_probs=46.9
Q ss_pred CCCcHHH-HHHHHHhcc-----CCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC-CCC-------CCChhHH------HH-
Q 038110 177 NPDTTLA-KEVAWKAEN-----DKLFDQAVFAEVSQSHDIRKIQGEIADKLGL-TFH-------EESESGR------AS- 235 (667)
Q Consensus 177 ~~~TtLa-~~vy~~~~~-----~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~-~~~-------~~~~~~~------~~- 235 (667)
.|||+|| ..+.|...+ .++-+.++++-+.++.+...-+.+.+++-+. +.. +.+...+ +-
T Consensus 200 tGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~a~t 279 (574)
T PTZ00185 200 TGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVT 279 (574)
T ss_pred CChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHHHHH
Confidence 3679996 666666532 1345678999999876543334444544431 111 1111111 11
Q ss_pred HHHHHh-cCCeEEEEEeCCCCc
Q 038110 236 LCNQLK-KNKTILMILDNIWEN 256 (667)
Q Consensus 236 l~~~L~-~~kr~LlVLDdvw~~ 256 (667)
+.+++. ++|.+|||+||+...
T Consensus 280 iAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 280 MGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHcCCCEEEEEcCchHH
Confidence 666763 389999999999764
No 229
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.60 E-value=1.1e+02 Score=34.86 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCC--CCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCC
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQ--SHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIW 254 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw 254 (667)
.|||+||+++++... +.+.-.+..|+.+. .-.+..+++.+-.- ..+.+. ...-+|||||+.
T Consensus 442 sGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v---------------fse~~~-~~PSiIvLDdld 504 (952)
T KOG0735|consen 442 SGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV---------------FSEALW-YAPSIIVLDDLD 504 (952)
T ss_pred CCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH---------------HHHHHh-hCCcEEEEcchh
Confidence 357999999999877 44444466665543 11233333333221 334444 567899999996
Q ss_pred C
Q 038110 255 E 255 (667)
Q Consensus 255 ~ 255 (667)
-
T Consensus 505 ~ 505 (952)
T KOG0735|consen 505 C 505 (952)
T ss_pred h
Confidence 3
No 230
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=33.56 E-value=3.6e+02 Score=24.34 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=17.6
Q ss_pred chHHHhHhhhhHHHHHHHHHHH
Q 038110 93 NLKIRIQHSTEAPRQLEAIVKL 114 (667)
Q Consensus 93 ~~~~r~~~~~~i~~~~~~l~~i 114 (667)
.+..-+++|.+||+|++.++.+
T Consensus 124 ~M~~v~~La~qIK~Ik~~lD~l 145 (149)
T PF10157_consen 124 SMKPVYKLAQQIKDIKKLLDLL 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999999888765
No 231
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=33.51 E-value=1.7e+02 Score=28.78 Aligned_cols=100 Identities=9% Similarity=0.089 Sum_probs=55.5
Q ss_pred CcccccchHHHHHHHHHhc------------------CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 038110 157 DYEAFESRMSTLNDILGAL------------------KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIA 218 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l------------------~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 218 (667)
+...++|.+..++.+++-. +.||+.|++++.+...- ..-. -|.|++.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~--~glr--LVEV~k~----------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD--EGLR--LVEVDKE----------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh--cCCe--EEEEcHH-----------
Confidence 3445677777777776421 23568899888887662 2322 2333221
Q ss_pred HHhCCCCCCCChhHHHH-HHHHHh-cCCeEEEEEeCCCCc---ccccccCCCcCCCC---CCcEEEEecCCh
Q 038110 219 DKLGLTFHEESESGRAS-LCNQLK-KNKTILMILDNIWEN---LDLLAIGIPHGNDH---KGCKILLTARSE 282 (667)
Q Consensus 219 ~~l~~~~~~~~~~~~~~-l~~~L~-~~kr~LlVLDdvw~~---~~~~~l~~~~~~~~---~gs~iivTTr~~ 282 (667)
+..... |.+.|+ ..+||.|..||+.-+ ..+..++..+..+- +...++..|.++
T Consensus 123 -----------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -----------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 111111 444443 267899999999754 45677776665432 233444444443
No 232
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=33.32 E-value=75 Score=30.73 Aligned_cols=75 Identities=21% Similarity=0.366 Sum_probs=44.9
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChhHH------HH-HHHHHh
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSH-DIRKIQGEIADKLGLT-------FHEESESGR------AS-LCNQLK 241 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~~------~~-l~~~L~ 241 (667)
.|||+|++.+.+... =+..+++-+.+.. .+.++.+++...-..+ ..+.....+ .- +.+++.
T Consensus 26 ~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfr 101 (215)
T PF00006_consen 26 VGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEYFR 101 (215)
T ss_dssp SSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhHHHh
Confidence 467999999998775 3455888887654 5666666664331111 111111111 11 555553
Q ss_pred -cCCeEEEEEeCCCC
Q 038110 242 -KNKTILMILDNIWE 255 (667)
Q Consensus 242 -~~kr~LlVLDdvw~ 255 (667)
++|.+|+++||+..
T Consensus 102 d~G~dVlli~Dsltr 116 (215)
T PF00006_consen 102 DQGKDVLLIIDSLTR 116 (215)
T ss_dssp HTTSEEEEEEETHHH
T ss_pred hcCCceeehhhhhHH
Confidence 38999999999944
No 233
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=32.38 E-value=1.6e+02 Score=32.05 Aligned_cols=79 Identities=20% Similarity=0.309 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChhHH------HH-HHHHHh
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSH-DIRKIQGEIADKLGLT-------FHEESESGR------AS-LCNQLK 241 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~~------~~-l~~~L~ 241 (667)
.|||||+..+.+..... +-+.++++-+.+.. .+.++..++...-..+ ..+.+...+ +. +.+++.
T Consensus 154 ~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfr 232 (461)
T PRK12597 154 VGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLR 232 (461)
T ss_pred CChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46799998888766533 56888888887755 4566766665432111 111111111 12 777774
Q ss_pred c--CCeEEEEEeCCCCc
Q 038110 242 K--NKTILMILDNIWEN 256 (667)
Q Consensus 242 ~--~kr~LlVLDdvw~~ 256 (667)
. +|++|+++||+-.-
T Consensus 233 d~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 233 DEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HhcCCceEEEeccchHH
Confidence 2 79999999999543
No 234
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=31.55 E-value=1.8e+02 Score=31.61 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=51.5
Q ss_pred CCCcHHHHHHHHHhccCC--CCC---------EEEEEEeCCCCCHHHHHHHHHHHhC-CCCC-------CCChhHH----
Q 038110 177 NPDTTLAKEVAWKAENDK--LFD---------QAVFAEVSQSHDIRKIQGEIADKLG-LTFH-------EESESGR---- 233 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~--~F~---------~~~wv~vs~~~~~~~i~~~i~~~l~-~~~~-------~~~~~~~---- 233 (667)
.|||||+..+.+.....+ -.| .++++-+.++....+.+.+.+..-+ .... +.+...+
T Consensus 152 vGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~a~ 231 (466)
T TIGR01040 152 LPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITP 231 (466)
T ss_pred CCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 356999999887765200 022 6788888888777777777776655 2211 1111111
Q ss_pred --HH-HHHHHh--cCCeEEEEEeCCCCc
Q 038110 234 --AS-LCNQLK--KNKTILMILDNIWEN 256 (667)
Q Consensus 234 --~~-l~~~L~--~~kr~LlVLDdvw~~ 256 (667)
+. +.+++. ++|++|+++||+..-
T Consensus 232 ~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 232 RLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred hhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 12 788886 489999999999654
No 235
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=31.50 E-value=2.7e+02 Score=30.88 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=81.1
Q ss_pred cccccchHHHHHHHHHhcCC---------------CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 038110 158 YEAFESRMSTLNDILGALKN---------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLG 222 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~---------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 222 (667)
+..++|-+.-+..+...+.. ||||.|+.+.....-.. | ....+|+.-...++|-.--.
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCCc
Confidence 34567877777777766643 46999999887654221 1 22334444444444432200
Q ss_pred CCCC-----CCChhHHHH-HHHHHh----cCCeEEEEEeCCCCc--ccccccCCCcCCCCCCc-EEEEecCChhhhhhcc
Q 038110 223 LTFH-----EESESGRAS-LCNQLK----KNKTILMILDNIWEN--LDLLAIGIPHGNDHKGC-KILLTARSEDTLSRKM 289 (667)
Q Consensus 223 ~~~~-----~~~~~~~~~-l~~~L~----~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs-~iivTTr~~~va~~~~ 289 (667)
.+.- .....+... |.+... .+|-=..++|.|.-. ..|+.+...+-.-...- -|+.||--+.|..+..
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 0000 001112222 444432 245456788999864 56776655543322333 3555776677765555
Q ss_pred CCcceEecCCCCHHHHHHHHH
Q 038110 290 DSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 290 ~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
.....|.+..++.++-...+.
T Consensus 168 SRcq~f~fkri~~~~I~~~L~ 188 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLA 188 (515)
T ss_pred hccccccccCCCHHHHHHHHH
Confidence 666799999999997777665
No 236
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=31.40 E-value=1.1e+02 Score=33.19 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=46.1
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCC-------CCCChhHH------HH-HHHHHh
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHD-IRKIQGEIADKLGLTF-------HEESESGR------AS-LCNQLK 241 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~-------~~~~~~~~------~~-l~~~L~ 241 (667)
.|||||++.+.+... .+..+.+-+.+... +.++..+++..-+... .+.+...+ +. +.+++.
T Consensus 173 ~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfr 248 (444)
T PRK08972 173 VGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYFR 248 (444)
T ss_pred CChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 467999999986433 36777777777654 4556666654322111 11111111 11 677773
Q ss_pred -cCCeEEEEEeCCCCc
Q 038110 242 -KNKTILMILDNIWEN 256 (667)
Q Consensus 242 -~~kr~LlVLDdvw~~ 256 (667)
+++++|+++||+-.-
T Consensus 249 d~G~~VLl~~DslTR~ 264 (444)
T PRK08972 249 DQGLNVLLLMDSLTRY 264 (444)
T ss_pred HcCCCEEEEEcChHHH
Confidence 389999999999654
No 237
>PRK12377 putative replication protein; Provisional
Probab=31.38 E-value=1.1e+02 Score=30.36 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=37.7
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.|||+||.++.+.... ....+++++++ +++..|-...... .....+.+.+. +-=||||||+-..
T Consensus 112 tGKThLa~AIa~~l~~--~g~~v~~i~~~------~l~~~l~~~~~~~------~~~~~~l~~l~--~~dLLiIDDlg~~ 175 (248)
T PRK12377 112 TGKNHLAAAIGNRLLA--KGRSVIVVTVP------DVMSRLHESYDNG------QSGEKFLQELC--KVDLLVLDEIGIQ 175 (248)
T ss_pred CCHHHHHHHHHHHHHH--cCCCeEEEEHH------HHHHHHHHHHhcc------chHHHHHHHhc--CCCEEEEcCCCCC
Confidence 4789999999998763 33445777543 4555554433211 01112444454 4579999999443
No 238
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=31.25 E-value=37 Score=37.01 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=5.5
Q ss_pred CCCCCeEEeecC
Q 038110 549 FPNLTSLELEVN 560 (667)
Q Consensus 549 L~~L~~L~l~~~ 560 (667)
+++|++|++++|
T Consensus 294 ~~~L~~L~l~~c 305 (482)
T KOG1947|consen 294 CPSLRELDLSGC 305 (482)
T ss_pred cCcccEEeeecC
Confidence 344444444444
No 239
>PRK07261 topology modulation protein; Provisional
Probab=31.19 E-value=90 Score=28.84 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=18.5
Q ss_pred hcCCCCcHHHHHHHHHhccC-CCCCEEEE
Q 038110 174 ALKNPDTTLAKEVAWKAEND-KLFDQAVF 201 (667)
Q Consensus 174 ~l~~~~TtLa~~vy~~~~~~-~~F~~~~w 201 (667)
.-+.||||||+.+....... -+.|...|
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 34578999999998765432 23455555
No 240
>PRK06526 transposase; Provisional
Probab=31.04 E-value=41 Score=33.50 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=33.4
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCC
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWE 255 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~ 255 (667)
+.|||+||..+.+....+ .+ .+.|+ +..+++..+...... . ......+.+. +.=+|||||+..
T Consensus 108 GtGKThLa~al~~~a~~~-g~-~v~f~------t~~~l~~~l~~~~~~----~---~~~~~l~~l~--~~dlLIIDD~g~ 170 (254)
T PRK06526 108 GTGKTHLAIGLGIRACQA-GH-RVLFA------TAAQWVARLAAAHHA----G---RLQAELVKLG--RYPLLIVDEVGY 170 (254)
T ss_pred CCchHHHHHHHHHHHHHC-CC-chhhh------hHHHHHHHHHHHHhc----C---cHHHHHHHhc--cCCEEEEccccc
Confidence 457899999998876532 22 23333 344555555432110 0 1111122232 345899999975
Q ss_pred c
Q 038110 256 N 256 (667)
Q Consensus 256 ~ 256 (667)
.
T Consensus 171 ~ 171 (254)
T PRK06526 171 I 171 (254)
T ss_pred C
Confidence 3
No 241
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=30.86 E-value=69 Score=27.46 Aligned_cols=16 Identities=31% Similarity=0.206 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHHhc
Q 038110 176 KNPDTTLAKEVAWKAE 191 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~ 191 (667)
+.||||+|+.+.+...
T Consensus 8 G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 8 GTGKTTLARALAQYLG 23 (132)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred CCCeeHHHHHHHhhcc
Confidence 3578999999999875
No 242
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.70 E-value=5.5e+02 Score=25.24 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 038110 23 IENLKAEVGKLKDGTESIQHAVDEAKRKG---------EEIEKKVEKLLDSGNNAIVEAEKFVGDEA 80 (667)
Q Consensus 23 ~~~~~~~~~~L~~~l~~i~~~l~~ae~~~---------~~~~~~~~~Wl~~l~~~ayd~ed~ld~~~ 80 (667)
+.+++.++..++.++..++.-+.+++.+. ......+..|-++...+.+++.++.++..
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665555431 12235566777777777777777766654
No 243
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=29.58 E-value=1.6e+02 Score=31.93 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCC-------CCCChhHH------HH-HHHHHh
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHD-IRKIQGEIADKLGLTF-------HEESESGR------AS-LCNQLK 241 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~-------~~~~~~~~------~~-l~~~L~ 241 (667)
.|||||++.+.+... -+..+.+-+.+... +.++..+.+..-+... .+.+...+ +. +.+++.
T Consensus 169 ~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEyfr 244 (442)
T PRK08927 169 VGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFR 244 (442)
T ss_pred CCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 357999999997654 35666677776554 4566655554322111 11111111 11 677773
Q ss_pred -cCCeEEEEEeCCCCc
Q 038110 242 -KNKTILMILDNIWEN 256 (667)
Q Consensus 242 -~~kr~LlVLDdvw~~ 256 (667)
++|.+|+++||+-.-
T Consensus 245 d~G~~Vll~~DslTr~ 260 (442)
T PRK08927 245 DQGKDVLCLMDSVTRF 260 (442)
T ss_pred HCCCcEEEEEeCcHHH
Confidence 389999999999654
No 244
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=29.51 E-value=95 Score=36.97 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=26.5
Q ss_pred HHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCCC-----------CCcEEEEecCC
Q 038110 236 LCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGNDH-----------KGCKILLTARS 281 (667)
Q Consensus 236 l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~-----------~gs~iivTTr~ 281 (667)
+.+.++....-+|+||++... ..++.+...+..+. ..+-||+||..
T Consensus 660 L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 660 LTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred HHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 556665456689999999754 33444433332221 34557777755
No 245
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=29.03 E-value=2.4e+02 Score=30.83 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=48.2
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCChhHH------HH-HHHHHh
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSH-DIRKIQGEIADKLGLTF-------HEESESGR------AS-LCNQLK 241 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~~------~~-l~~~L~ 241 (667)
.|||||+..+........ =+.++++-+.+.. .+.++..++...=..+. .+.+...+ +. +.+++.
T Consensus 155 vGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfr 233 (463)
T PRK09280 155 VGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFR 233 (463)
T ss_pred CChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 467999998876655322 1467888887755 56777777765422111 11111111 12 777773
Q ss_pred --cCCeEEEEEeCCCCc
Q 038110 242 --KNKTILMILDNIWEN 256 (667)
Q Consensus 242 --~~kr~LlVLDdvw~~ 256 (667)
++|++||++||+-.-
T Consensus 234 d~~G~~VLll~DslTR~ 250 (463)
T PRK09280 234 DVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HhcCCceEEEecchHHH
Confidence 389999999999654
No 246
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=28.34 E-value=7.6e+02 Score=26.40 Aligned_cols=87 Identities=14% Similarity=0.108 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhhccccccchH
Q 038110 25 NLKAEVGKLKDGTESIQ---------HAVDEAKRKGEEIEKKVEKLLDSGNNAIVEAEKFVGDEAAANKQCFKGLCANLK 95 (667)
Q Consensus 25 ~~~~~~~~L~~~l~~i~---------~~l~~ae~~~~~~~~~~~~Wl~~l~~~ayd~ed~ld~~~~~~~~~~~~~~~~~~ 95 (667)
.-+++..+.++++..-+ ..|++|-.++.-..++.+..+.+-.+.-.++|+++|.+....+-.+. ..+.
T Consensus 285 ~qEE~~aKa~Rqla~~~R~eLh~if~~qi~~ai~~GeL~~e~Ak~Ll~~y~~~Q~~vEelMD~~qA~kRy~L~---~R~a 361 (429)
T PF12297_consen 285 QQEEDFAKARRQLAVFRRVELHEIFFEQIKSAIFKGELKPEAAKSLLQDYSKIQENVEELMDFFQANKRYHLS---ERFA 361 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH---HHHH
Confidence 34445555555444333 33677777765567889999999999999999999998754321111 1223
Q ss_pred HHhHhhhhHHHHHHHHHHH
Q 038110 96 IRIQHSTEAPRQLEAIVKL 114 (667)
Q Consensus 96 ~r~~~~~~i~~~~~~l~~i 114 (667)
.|--+++.+.....++..+
T Consensus 362 ~R~~Lv~~~qs~e~~~~~l 380 (429)
T PF12297_consen 362 QREYLVQNLQSQETRVSGL 380 (429)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 3334455555555554443
No 247
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=27.16 E-value=2.3e+02 Score=31.00 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=48.9
Q ss_pred CCCcHHHHHHHHHhccCCCCC--EEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCChhHH------HH-HHHH
Q 038110 177 NPDTTLAKEVAWKAENDKLFD--QAVFAEVSQSH-DIRKIQGEIADKLGLTF-------HEESESGR------AS-LCNQ 239 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~--~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~~------~~-l~~~ 239 (667)
.|||||+..+.+.......+. .++.+-+.+.. .+.++..++...=..+. .+.+...+ +. +.++
T Consensus 152 ~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEy 231 (458)
T TIGR01041 152 LPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAEY 231 (458)
T ss_pred CCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 357999999998765432221 57777777755 45667776664321111 11111111 12 7888
Q ss_pred Hh--cCCeEEEEEeCCCCc
Q 038110 240 LK--KNKTILMILDNIWEN 256 (667)
Q Consensus 240 L~--~~kr~LlVLDdvw~~ 256 (667)
+. ++|++|+++||+..-
T Consensus 232 fr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 232 LAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHccCCcEEEEEcChhHH
Confidence 86 489999999999654
No 248
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.99 E-value=3.3e+02 Score=21.86 Aligned_cols=13 Identities=15% Similarity=0.348 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 038110 62 LDSGNNAIVEAEK 74 (667)
Q Consensus 62 l~~l~~~ayd~ed 74 (667)
+.+..++..|+++
T Consensus 53 l~~~n~l~~dv~~ 65 (90)
T PF06103_consen 53 LHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444433333
No 249
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=26.95 E-value=2.3e+02 Score=21.97 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038110 18 SYNNNIENLKAEVGKLKDGTESIQH 42 (667)
Q Consensus 18 ~~~~~~~~~~~~~~~L~~~l~~i~~ 42 (667)
+-.+..+.+.+....+++.+..+..
T Consensus 23 sG~e~R~~l~~~~~~~~~~~~~~~~ 47 (74)
T PF12732_consen 23 SGKETREKLKDKAEDLKDKAKDLYE 47 (74)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666655544443
No 250
>CHL00095 clpC Clp protease ATP binding subunit
Probab=26.82 E-value=1.6e+02 Score=35.08 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=26.2
Q ss_pred HHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCC-----------CCCcEEEEecCCh
Q 038110 236 LCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGND-----------HKGCKILLTARSE 282 (667)
Q Consensus 236 l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~-----------~~gs~iivTTr~~ 282 (667)
+.+.++..-.-++++|++... ..++.+...+..+ ...+-||+||...
T Consensus 603 l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 603 LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLG 662 (821)
T ss_pred HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcc
Confidence 666666333358899999765 3344443333221 1345567777653
No 251
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=26.59 E-value=3.4e+02 Score=21.77 Aligned_cols=36 Identities=11% Similarity=0.385 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 038110 27 KAEVGKLKDGTESIQHAVDEAKRKGEEIEKKVEKLL 62 (667)
Q Consensus 27 ~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl 62 (667)
..++..|...|..|++.|...|.+.+.....++..|
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LL 60 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELL 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467888999999999999999987543333333333
No 252
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=26.56 E-value=64 Score=32.79 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=82.3
Q ss_pred CcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCCCCCEEEE-EEeCCCCCHHHHHHHH--HH
Q 038110 157 DYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDKLFDQAVF-AEVSQSHDIRKIQGEI--AD 219 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~~F~~~~w-v~vs~~~~~~~i~~~i--~~ 219 (667)
....+.|-+..+.-+.+.+.. |||+-|........-.+.|.+++- .++|..-...-+-.++ +.
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fa 113 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFA 113 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHH
Confidence 345566777777777766543 457766666655443456766433 4554432221000000 11
Q ss_pred HhCCCCCCCChhHHHHHHHHHhcCCe-EEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChh-hhhhccCCcceE
Q 038110 220 KLGLTFHEESESGRASLCNQLKKNKT-ILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSED-TLSRKMDSKQNF 295 (667)
Q Consensus 220 ~l~~~~~~~~~~~~~~l~~~L~~~kr-~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~-va~~~~~~~~~~ 295 (667)
++......... ...+. =.||||+.... +.|..+...+.+...-+|.|..|..-. +..........|
T Consensus 114 kl~~~~~~~~~----------~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 114 KLTVLLKRSDG----------YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred HHhhccccccC----------CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHh
Confidence 11111000000 01223 46788999876 779988777766566666555444433 322122233578
Q ss_pred ecCCCCHHHHHHHHH---------------HHHHHHhCCc
Q 038110 296 SVGILKEEEAWSGEF---------------KWVAKECAGL 320 (667)
Q Consensus 296 ~l~~L~~~~s~~Lf~---------------~~i~~~c~Gl 320 (667)
+-.+|.+++...-+. +.|++.++|-
T Consensus 184 rFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 184 RFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred cCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 888999887766554 7778888774
No 253
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=26.38 E-value=25 Score=33.96 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=27.1
Q ss_pred CCeEEEEEeCCCCc---ccccccCCCcCCCCCCcEEEEecCChhhhh
Q 038110 243 NKTILMILDNIWEN---LDLLAIGIPHGNDHKGCKILLTARSEDTLS 286 (667)
Q Consensus 243 ~kr~LlVLDdvw~~---~~~~~l~~~~~~~~~gs~iivTTr~~~va~ 286 (667)
+.--++|||||... .....+...+....+.+.+||||-++.++.
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~ 203 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE 203 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34568899999876 223444444444455688999999988863
No 254
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=26.34 E-value=2.5e+02 Score=30.75 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=49.1
Q ss_pred CCCcHHHHHHHHHhccC---CCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCChhHH------HH-HHH
Q 038110 177 NPDTTLAKEVAWKAEND---KLFDQAVFAEVSQSH-DIRKIQGEIADKLGLTF-------HEESESGR------AS-LCN 238 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~---~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~~------~~-l~~ 238 (667)
.|||||+..+.+..... +.| .++.+-+.+.. .+.++..++...=..+. .+.+...+ +. +.+
T Consensus 154 ~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAE 232 (460)
T PRK04196 154 LPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAE 232 (460)
T ss_pred CCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 35799999998876532 112 67778787755 46777777765421111 11111111 12 788
Q ss_pred HHh--cCCeEEEEEeCCCCc
Q 038110 239 QLK--KNKTILMILDNIWEN 256 (667)
Q Consensus 239 ~L~--~~kr~LlVLDdvw~~ 256 (667)
++. +++++||++||+..-
T Consensus 233 yfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 233 YLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHhcCCcEEEEEcChHHH
Confidence 886 479999999999654
No 255
>PRK11020 hypothetical protein; Provisional
Probab=26.25 E-value=4.1e+02 Score=22.60 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 038110 26 LKAEVGKLKDGTESIQHAVDEAKRKGEEIEKKVEKLLDSGNNAIVEAEKFVG 77 (667)
Q Consensus 26 ~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~l~~~ayd~ed~ld 77 (667)
++.+++.|.+.|+.++.-+..|..+.+ .+.+....+++..+.-+++-+-.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd--~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGD--AEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999988863 56777778888777777776543
No 256
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=26.23 E-value=1.1e+02 Score=36.43 Aligned_cols=46 Identities=9% Similarity=0.145 Sum_probs=25.5
Q ss_pred HHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCC----C-------CCcEEEEecCC
Q 038110 236 LCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGND----H-------KGCKILLTARS 281 (667)
Q Consensus 236 l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~----~-------~gs~iivTTr~ 281 (667)
+.+.++.....+|+||++... ..++.+...+..+ + ..+-||+||..
T Consensus 659 l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 659 LTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 555554233459999999765 4455443333222 1 23447777765
No 257
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=26.12 E-value=2.7e+02 Score=28.62 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhcCcccHHHHHHHHHHHHH--------HHHHHHHHHhhH
Q 038110 25 NLKAEVGKLKDGTESIQHAVD-EAKRKGEEIEKKVEKLLDSGNN--------AIVEAEKFVGDE 79 (667)
Q Consensus 25 ~~~~~~~~L~~~l~~i~~~l~-~ae~~~~~~~~~~~~Wl~~l~~--------~ayd~ed~ld~~ 79 (667)
-+...+..|...-++||++=. -..-+. ..+..|+.|++.++. +.|=|.||+..-
T Consensus 8 ~l~~kL~~L~~TQeSIqtlS~Wli~hkk-~a~~IV~~Wl~~~~~~~~~~Kl~llYLaNDVvQns 70 (325)
T KOG2669|consen 8 ALEKKLAELSNTQESIQTLSLWLIHHKK-HARLIVDVWLKELKKSSVNHKLTLLYLANDVVQNS 70 (325)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhccCCCceeeehhhhHHHHHHh
Confidence 356677778788888877621 112222 247899999999987 567799998643
No 258
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=26.09 E-value=1.9e+02 Score=30.04 Aligned_cols=82 Identities=12% Similarity=-0.018 Sum_probs=52.6
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++=.+|+|++... ...+.+...+-.-..+..+|++|.+. .+..+.......+.+.++++++..+.+.
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~~~~ 185 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAEISE 185 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccChHH
Confidence 55667789999875 34455544444444556666666554 4443333445689999999999887665
Q ss_pred -HHHHHHhCCcchHH
Q 038110 311 -KWVAKECAGLPVSI 324 (667)
Q Consensus 311 -~~i~~~c~GlPLai 324 (667)
...+..++|.|+.+
T Consensus 186 ~~~~~~l~~g~p~~A 200 (325)
T PRK06871 186 ILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHHcCCCHHHH
Confidence 23556788888643
No 259
>PRK07952 DNA replication protein DnaC; Validated
Probab=25.60 E-value=1.8e+02 Score=28.76 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.|||+||.++.+....+ -..+++++ +.+++..+-..... .+.....+.+.+. +-=+|||||+...
T Consensus 110 tGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~-----~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 110 TGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN-----SETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred CCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh-----ccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 47799999999987632 23456664 45555555443321 1111122445565 3458888999664
Q ss_pred --cccc
Q 038110 257 --LDLL 260 (667)
Q Consensus 257 --~~~~ 260 (667)
.+|+
T Consensus 175 ~~s~~~ 180 (244)
T PRK07952 175 TESRYE 180 (244)
T ss_pred CCCHHH
Confidence 4454
No 260
>PRK06921 hypothetical protein; Provisional
Probab=25.59 E-value=1.9e+02 Score=29.00 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCC
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNI 253 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdv 253 (667)
.|||+||.++.+....+. -..+++++. .+++..+.... .......+.+. +-=||||||+
T Consensus 128 ~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~---------~~~~~~~~~~~--~~dlLiIDDl 186 (266)
T PRK06921 128 SGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF---------DLLEAKLNRMK--KVEVLFIDDL 186 (266)
T ss_pred CcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH---------HHHHHHHHHhc--CCCEEEEecc
Confidence 467999999999765221 234667664 23333332221 01112333443 3469999999
No 261
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=25.52 E-value=3.1e+02 Score=26.24 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=28.0
Q ss_pred CCCCcHHHHHHHHHhccCCCC------CEEEEEEeCCCCCHHHHHHHHHHH
Q 038110 176 KNPDTTLAKEVAWKAENDKLF------DQAVFAEVSQSHDIRKIQGEIADK 220 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F------~~~~wv~vs~~~~~~~i~~~i~~~ 220 (667)
+.|||+||..+.-.... .- ..++|++....++...+. ++.+.
T Consensus 29 GsGKT~l~~~ia~~~~~--~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~ 76 (226)
T cd01393 29 GSGKTQLCLQLAVEAQL--PGELGGLEGKVVYIDTEGAFRPERLV-QLAVR 76 (226)
T ss_pred CCChhHHHHHHHHHhhc--ccccCCCcceEEEEecCCCCCHHHHH-HHHHH
Confidence 45789999998765432 23 468999988888765554 33333
No 262
>PRK10865 protein disaggregation chaperone; Provisional
Probab=25.23 E-value=1e+02 Score=36.69 Aligned_cols=80 Identities=14% Similarity=-0.006 Sum_probs=36.5
Q ss_pred CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCc
Q 038110 178 PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~ 256 (667)
|||++|+.+.+...- .-...+.+..+.- .- ......+-+..++....+... +.+.++....-+|+|||+...
T Consensus 610 GKT~lA~aLa~~l~~--~~~~~i~id~se~-~~----~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 610 GKTELCKALANFMFD--SDDAMVRIDMSEF-ME----KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred CHHHHHHHHHHHhhc--CCCcEEEEEhHHh-hh----hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 569999999975431 1122333433321 11 111222322222211111122 444444233469999999754
Q ss_pred --ccccccCC
Q 038110 257 --LDLLAIGI 264 (667)
Q Consensus 257 --~~~~~l~~ 264 (667)
..++.+..
T Consensus 683 ~~~v~~~Ll~ 692 (857)
T PRK10865 683 HPDVFNILLQ 692 (857)
T ss_pred CHHHHHHHHH
Confidence 44444433
No 263
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=24.89 E-value=2e+02 Score=27.20 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=27.0
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHH
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQG 215 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 215 (667)
+.|||++|.++..... ..-..++||+... ++...+.+
T Consensus 22 GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 22 GSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHH
Confidence 4588999999887654 3357899999876 76665544
No 264
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.62 E-value=9.9e+02 Score=27.89 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038110 23 IENLKAEVGKLKDGTESIQHAVDEAK 48 (667)
Q Consensus 23 ~~~~~~~~~~L~~~l~~i~~~l~~ae 48 (667)
...++..+..|+.+.+.=..-|.++.
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~ 585 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQ 585 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544444444443
No 265
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=24.25 E-value=3.9e+02 Score=27.19 Aligned_cols=19 Identities=11% Similarity=-0.155 Sum_probs=14.1
Q ss_pred HHhHhhhhHHHHHHHHHHH
Q 038110 96 IRIQHSTEAPRQLEAIVKL 114 (667)
Q Consensus 96 ~r~~~~~~i~~~~~~l~~i 114 (667)
.--.+-+.|+++..|++++
T Consensus 119 ~i~~V~~~ik~LL~rId~a 137 (302)
T PF05508_consen 119 SIKKVERYIKDLLARIDDA 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3346677888888888885
No 266
>PRK08149 ATP synthase SpaL; Validated
Probab=23.96 E-value=2.5e+02 Score=30.39 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=45.5
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCC-------CCCChhH------HHH-HHHHH
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQS-HDIRKIQGEIADKLGLTF-------HEESESG------RAS-LCNQL 240 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~-------~~~~~~~------~~~-l~~~L 240 (667)
+.|||||++.+.+... -+..+...+... -++..+..+......... .+.+... .+. +.+++
T Consensus 161 G~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~f 236 (428)
T PRK08149 161 GCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYF 236 (428)
T ss_pred CCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHHH
Confidence 3467999999987543 344444555443 356677776665433211 1111111 112 66776
Q ss_pred h-cCCeEEEEEeCCCCc
Q 038110 241 K-KNKTILMILDNIWEN 256 (667)
Q Consensus 241 ~-~~kr~LlVLDdvw~~ 256 (667)
. ++|++||++||+-..
T Consensus 237 r~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 237 RDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHcCCCEEEEccchHHH
Confidence 3 389999999999664
No 267
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=9.5e+02 Score=28.16 Aligned_cols=147 Identities=15% Similarity=0.117 Sum_probs=80.7
Q ss_pred cCCCcccccchHHHHHHHHHhcCC--------------------------CCcHHHHHHHHHhccCCCCCEEEEEEeCCC
Q 038110 154 SNKDYEAFESRMSTLNDILGALKN--------------------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQS 207 (667)
Q Consensus 154 ~~~~~~~~~gr~~~~~~i~~~l~~--------------------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~ 207 (667)
|...+.++.|.++-+.+|.+-+.- |||-+||+|...... .|++|-.+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP 739 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP 739 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH
Confidence 445566788999999988865521 469999999987763 24555443
Q ss_pred CCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc-----------cccccc----C---CCcCC-
Q 038110 208 HDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN-----------LDLLAI----G---IPHGN- 268 (667)
Q Consensus 208 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~-----------~~~~~l----~---~~~~~- 268 (667)
+++..- + +.++.+...+.++-+.-+.|.|.+|.+++. ...+.+ . ..+.+
T Consensus 740 ----ELLNMY---V-----GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~ 807 (953)
T KOG0736|consen 740 ----ELLNMY---V-----GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS 807 (953)
T ss_pred ----HHHHHH---h-----cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC
Confidence 111111 1 112222222555555578899999998764 111111 1 11222
Q ss_pred CCCCcEEEEecCChhhhhh-ccC---CcceEecCCCCHHHHHH-HHH--------------HHHHHHhCC
Q 038110 269 DHKGCKILLTARSEDTLSR-KMD---SKQNFSVGILKEEEAWS-GEF--------------KWVAKECAG 319 (667)
Q Consensus 269 ~~~gs~iivTTr~~~va~~-~~~---~~~~~~l~~L~~~~s~~-Lf~--------------~~i~~~c~G 319 (667)
..++--||=.|...+.... .+. -++...+++=+++++.. ++. .+|+++|.-
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~ 877 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPP 877 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCc
Confidence 2333345556666665421 122 23456677666666643 222 788888853
No 268
>CHL00195 ycf46 Ycf46; Provisional
Probab=23.47 E-value=4e+02 Score=29.39 Aligned_cols=68 Identities=16% Similarity=0.025 Sum_probs=37.1
Q ss_pred CCeEEEEEeCCCCcc----cc----------cccCCCcCCCCCCcEEEEecCChhhhh----hccCCcceEecCCCCHHH
Q 038110 243 NKTILMILDNIWENL----DL----------LAIGIPHGNDHKGCKILLTARSEDTLS----RKMDSKQNFSVGILKEEE 304 (667)
Q Consensus 243 ~kr~LlVLDdvw~~~----~~----------~~l~~~~~~~~~gs~iivTTr~~~va~----~~~~~~~~~~l~~L~~~~ 304 (667)
...++|++|++.... .. ..+...+.....+--||.||....-.. +...-...+.++..+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 567999999996421 00 001111111222334556776654321 111234578888888888
Q ss_pred HHHHHH
Q 038110 305 AWSGEF 310 (667)
Q Consensus 305 s~~Lf~ 310 (667)
-.++|.
T Consensus 397 R~~Il~ 402 (489)
T CHL00195 397 REKIFK 402 (489)
T ss_pred HHHHHH
Confidence 888886
No 269
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=23.32 E-value=2.2e+02 Score=27.43 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHH
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKI 213 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i 213 (667)
+.|||++|.++..... ..-..++||+.. .++...+
T Consensus 33 GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 33 GSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHH
Confidence 3478999999987665 234678999887 6665554
No 270
>PRK06936 type III secretion system ATPase; Provisional
Probab=23.28 E-value=2.5e+02 Score=30.47 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCChhHH------HH-HHHHHh
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSH-DIRKIQGEIADKLGLTF-------HEESESGR------AS-LCNQLK 241 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~~------~~-l~~~L~ 241 (667)
.|||||.+.+++... -+.++.+-+.+.. .+.++..+.+..-+.+. .+.+...+ +. +.+++.
T Consensus 173 ~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr 248 (439)
T PRK06936 173 GGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFR 248 (439)
T ss_pred CChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 357999999998654 3678888887765 34555544433211110 11111111 12 677773
Q ss_pred -cCCeEEEEEeCCCCc
Q 038110 242 -KNKTILMILDNIWEN 256 (667)
Q Consensus 242 -~~kr~LlVLDdvw~~ 256 (667)
++|++|+++||+-.-
T Consensus 249 d~G~~Vll~~DslTR~ 264 (439)
T PRK06936 249 DQGKRVLLLMDSVTRF 264 (439)
T ss_pred HcCCCEEEeccchhHH
Confidence 389999999999654
No 271
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=22.67 E-value=4.9e+02 Score=25.60 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=23.8
Q ss_pred HHHHHHhC-CcchHHHHHHHHHccCChHHHHHHHHHhcCCCCc
Q 038110 311 KWVAKECA-GLPVSIVTVSRALRNKSLFEWKDALQQLRRPIST 352 (667)
Q Consensus 311 ~~i~~~c~-GlPLai~~~g~~L~~k~~~~W~~~l~~l~~~~~~ 352 (667)
..+.+-|+ .+|+.++.+-...-..+.++=-+++..+|...|+
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgys 270 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYS 270 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 44555553 3566666555555444555555666666666554
No 272
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=22.60 E-value=4e+02 Score=31.15 Aligned_cols=203 Identities=16% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH-----------------HHHHHHHhhHHHhhhhhccccc
Q 038110 29 EVGKLKDGTESIQHAVDEAKRKGEEIEKKVEKLLDSGNNAI-----------------VEAEKFVGDEAAANKQCFKGLC 91 (667)
Q Consensus 29 ~~~~L~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~l~~~a-----------------yd~ed~ld~~~~~~~~~~~~~~ 91 (667)
+++.+++++..++.-...+.+.++ +.-+.-+.++..+. .++.+++.....-....+...-
T Consensus 402 ~l~~~~~~~~~l~~e~~~~~~e~~---~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e 478 (786)
T COG0542 402 ELDELERELAQLEIEKEALEREQD---EKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDE 478 (786)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhh
Q ss_pred --cchHHHhHhhhhHHHHHHHHHHHHHcCCCCeeecCCCCCccccCCCCCCCCCCCCccccccccCCCcccccchHHHHH
Q 038110 92 --ANLKIRIQHSTEAPRQLEAIVKLREAGRFDRISYRPLPEDIFCDNKNRSSSSSFDPQNLTLMSNKDYEAFESRMSTLN 169 (667)
Q Consensus 92 --~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~ 169 (667)
.-...-..+.+++..-..-+..+...-+..+.....+..++++ +-..++.|+
T Consensus 479 ~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigs------------------FlF~GPTGV-------- 532 (786)
T COG0542 479 KEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGS------------------FLFLGPTGV-------- 532 (786)
T ss_pred HHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceE------------------EEeeCCCcc--------
Q ss_pred HHHHhcCCCCcHHHHHHHHHhccCCCC---CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCe
Q 038110 170 DILGALKNPDTTLAKEVAWKAENDKLF---DQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKT 245 (667)
Q Consensus 170 ~i~~~l~~~~TtLa~~vy~~~~~~~~F---~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr 245 (667)
|||-||+.+.. ..| +.-+-++.|+- .-+.-++.|-+..++-..-+... +-+..+ .|.
T Consensus 533 --------GKTELAkaLA~-----~Lfg~e~aliR~DMSEy-----~EkHsVSrLIGaPPGYVGyeeGG~LTEaVR-r~P 593 (786)
T COG0542 533 --------GKTELAKALAE-----ALFGDEQALIRIDMSEY-----MEKHSVSRLIGAPPGYVGYEEGGQLTEAVR-RKP 593 (786)
T ss_pred --------cHHHHHHHHHH-----HhcCCCccceeechHHH-----HHHHHHHHHhCCCCCCceeccccchhHhhh-cCC
Q ss_pred E-EEEEeCCCCc--ccccccCCCcCCCC-----------CCcEEEEec
Q 038110 246 I-LMILDNIWEN--LDLLAIGIPHGNDH-----------KGCKILLTA 279 (667)
Q Consensus 246 ~-LlVLDdvw~~--~~~~~l~~~~~~~~-----------~gs~iivTT 279 (667)
| .|.||.|... +..+-+...|.++. +.+-||+||
T Consensus 594 ySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTS 641 (786)
T COG0542 594 YSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTS 641 (786)
T ss_pred CeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEec
No 273
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=22.57 E-value=4.8e+02 Score=26.26 Aligned_cols=83 Identities=8% Similarity=0.194 Sum_probs=47.0
Q ss_pred CCCCcHHH-HHHHHHhccCCCCCEE-EEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChhHH------HH-HHH
Q 038110 176 KNPDTTLA-KEVAWKAENDKLFDQA-VFAEVSQSH-DIRKIQGEIADKLGLT-------FHEESESGR------AS-LCN 238 (667)
Q Consensus 176 ~~~~TtLa-~~vy~~~~~~~~F~~~-~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~~------~~-l~~ 238 (667)
+.|||+|| +.+.+... -+.+ +++-+.+.. .+.++..++.+.-..+ ..+.....+ +- +.+
T Consensus 79 g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE 154 (274)
T cd01132 79 QTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGE 154 (274)
T ss_pred CCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHH
Confidence 34789995 66666432 3454 777777765 4566666666432111 111111111 12 666
Q ss_pred HHh-cCCeEEEEEeCCCCc-cccccc
Q 038110 239 QLK-KNKTILMILDNIWEN-LDLLAI 262 (667)
Q Consensus 239 ~L~-~~kr~LlVLDdvw~~-~~~~~l 262 (667)
++. ++|.+|+|+||+..- ..|..+
T Consensus 155 ~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 155 YFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 664 379999999999664 445554
No 274
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=22.27 E-value=81 Score=33.68 Aligned_cols=119 Identities=12% Similarity=0.012 Sum_probs=63.8
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.|||.|++++.|... .+.....-++++ ......+++..+..+ .....++... -=++++||++--
T Consensus 124 lGKTHLl~Aign~~~--~~~~~a~v~y~~----se~f~~~~v~a~~~~-------~~~~Fk~~y~---~dlllIDDiq~l 187 (408)
T COG0593 124 LGKTHLLQAIGNEAL--ANGPNARVVYLT----SEDFTNDFVKALRDN-------EMEKFKEKYS---LDLLLIDDIQFL 187 (408)
T ss_pred CCHHHHHHHHHHHHH--hhCCCceEEecc----HHHHHHHHHHHHHhh-------hHHHHHHhhc---cCeeeechHhHh
Confidence 467999999999876 444422223322 344455555444321 1111333331 238889999764
Q ss_pred ---ccccc-cCCCcCC-CCCCcEEEEecCChhhh--------hhccCCcceEecCCCCHHHHHHHHHH
Q 038110 257 ---LDLLA-IGIPHGN-DHKGCKILLTARSEDTL--------SRKMDSKQNFSVGILKEEEAWSGEFK 311 (667)
Q Consensus 257 ---~~~~~-l~~~~~~-~~~gs~iivTTr~~~va--------~~~~~~~~~~~l~~L~~~~s~~Lf~~ 311 (667)
+.|+. +...|.. ...|-.||+|++...-. ..-....-++++++++.+....++.+
T Consensus 188 ~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 188 AGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 22221 1111111 12344788888654321 01133446899999999988887763
No 275
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=22.15 E-value=3.6e+02 Score=29.43 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=47.7
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChhHH------HH-HHHHHh
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSH-DIRKIQGEIADKLGLT-------FHEESESGR------AS-LCNQLK 241 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~~------~~-l~~~L~ 241 (667)
.|||||+..+....... +=+.++++-+.+.. .+.++..++...=... ..+.+...+ +. +.+++.
T Consensus 154 ~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfr 232 (461)
T TIGR01039 154 VGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFR 232 (461)
T ss_pred CChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36799999988765422 22468888887654 4577777775431111 111111111 12 788884
Q ss_pred c--CCeEEEEEeCCCCc
Q 038110 242 K--NKTILMILDNIWEN 256 (667)
Q Consensus 242 ~--~kr~LlVLDdvw~~ 256 (667)
. ++++|+++||+-.-
T Consensus 233 d~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 233 DEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HhcCCeeEEEecchhHH
Confidence 3 78999999999664
No 276
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.87 E-value=2.6e+02 Score=32.04 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=25.8
Q ss_pred CCcccccchHHHHHHHHHhcC-------------------CCCcHHHHHHHHHhc
Q 038110 156 KDYEAFESRMSTLNDILGALK-------------------NPDTTLAKEVAWKAE 191 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~-------------------~~~TtLa~~vy~~~~ 191 (667)
.....++|.++.+.++..|+. .||||+++.+.....
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345567788887777776653 256999999998654
No 277
>PRK09183 transposase/IS protein; Provisional
Probab=21.75 E-value=99 Score=30.86 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=33.1
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCC
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIW 254 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw 254 (667)
+.|||+||..+.+....+ .. .+.+++ ..++...+-...... .... +.+.+ .+.-++|+||+.
T Consensus 112 GtGKThLa~al~~~a~~~-G~-~v~~~~------~~~l~~~l~~a~~~~-------~~~~~~~~~~--~~~dlLiiDdlg 174 (259)
T PRK09183 112 GVGKTHLAIALGYEAVRA-GI-KVRFTT------AADLLLQLSTAQRQG-------RYKTTLQRGV--MAPRLLIIDEIG 174 (259)
T ss_pred CCCHHHHHHHHHHHHHHc-CC-eEEEEe------HHHHHHHHHHHHHCC-------cHHHHHHHHh--cCCCEEEEcccc
Confidence 457899999998765432 22 233443 334444443221110 0112 33323 244699999997
Q ss_pred Cc
Q 038110 255 EN 256 (667)
Q Consensus 255 ~~ 256 (667)
..
T Consensus 175 ~~ 176 (259)
T PRK09183 175 YL 176 (259)
T ss_pred cC
Confidence 53
No 278
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=21.72 E-value=4.9e+02 Score=27.11 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhh
Q 038110 24 ENLKAEVGKLKDGTESIQHAVDEAKRKGEEIEKKVEKLLDSGNNAIVEAEKFVGDEAAANKQC 86 (667)
Q Consensus 24 ~~~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~l~~~ayd~ed~ld~~~~~~~~~ 86 (667)
..+..-+.+|+++++.|...++.+-+++.. ...++.=++++++=.-.-.+-++|.+.+...|
T Consensus 260 dTIsrLV~RL~deIE~~~~~v~fave~~~d-~~~vk~vv~el~k~~~~f~~qleELeehv~lC 321 (336)
T PF05055_consen 260 DTISRLVDRLEDEIEHMKALVDFAVERGED-EEAVKEVVKELKKNVESFTEQLEELEEHVYLC 321 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777665421 34455555555554444444444444443333
No 279
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=21.44 E-value=2.6e+02 Score=28.95 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=41.2
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CChhHHHH-HHHHHhcCCeEEEE
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHE------ESESGRAS-LCNQLKKNKTILMI 249 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~-l~~~L~~~kr~LlV 249 (667)
.||||||-.+..... +.-..++||+....+|... +++++.+... ....+... +.+.++.+.--++|
T Consensus 64 sGKttLaL~~ia~~q--~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVV 136 (322)
T PF00154_consen 64 SGKTTLALHAIAEAQ--KQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVV 136 (322)
T ss_dssp SSHHHHHHHHHHHHH--HTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEE
T ss_pred CchhhhHHHHHHhhh--cccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEE
Confidence 467999999998765 3345699999988777643 4455544321 11222223 55556656667899
Q ss_pred EeCCCCc
Q 038110 250 LDNIWEN 256 (667)
Q Consensus 250 LDdvw~~ 256 (667)
+|-|-..
T Consensus 137 vDSv~al 143 (322)
T PF00154_consen 137 VDSVAAL 143 (322)
T ss_dssp EE-CTT-
T ss_pred EecCccc
Confidence 9988654
No 280
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=21.31 E-value=32 Score=32.14 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.|||.||..+.+....+ . ..+.|++ ..+++..+-. ..... ....+.+.+. + -=||||||+-..
T Consensus 58 ~GKThLa~ai~~~~~~~-g-~~v~f~~------~~~L~~~l~~----~~~~~---~~~~~~~~l~-~-~dlLilDDlG~~ 120 (178)
T PF01695_consen 58 TGKTHLAVAIANEAIRK-G-YSVLFIT------ASDLLDELKQ----SRSDG---SYEELLKRLK-R-VDLLILDDLGYE 120 (178)
T ss_dssp SSHHHHHHHHHHHHHHT-T---EEEEE------HHHHHHHHHC----CHCCT---THCHHHHHHH-T-SSCEEEETCTSS
T ss_pred HHHHHHHHHHHHHhccC-C-cceeEee------cCceeccccc----ccccc---chhhhcCccc-c-ccEeccccccee
Confidence 47899999998876532 2 2356665 3445555432 21111 1122445555 2 357889999765
Q ss_pred --ccccc--cCCCcCC-CCCCcEEEEecCChh
Q 038110 257 --LDLLA--IGIPHGN-DHKGCKILLTARSED 283 (667)
Q Consensus 257 --~~~~~--l~~~~~~-~~~gs~iivTTr~~~ 283 (667)
.+|.. +..-+.. ..++ .+||||....
T Consensus 121 ~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~~ 151 (178)
T PF01695_consen 121 PLSEWEAELLFEIIDERYERK-PTIITSNLSP 151 (178)
T ss_dssp ---HHHHHCTHHHHHHHHHT--EEEEEESS-H
T ss_pred eecccccccchhhhhHhhccc-CeEeeCCCch
Confidence 33321 1111100 1123 5888887653
No 281
>PRK05541 adenylylsulfate kinase; Provisional
Probab=20.74 E-value=1.4e+02 Score=27.48 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=19.1
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEE
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFA 202 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv 202 (667)
+.||||+|+.+++... ..+...+++
T Consensus 17 GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 17 GSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 5689999999999876 446566655
No 282
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.20 E-value=3.8e+02 Score=20.48 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q 038110 26 LKAEVGKLKDGTESIQHAVDEAKRKGEEIEKKVEKLLDSGNNAIVEAEK 74 (667)
Q Consensus 26 ~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~l~~~ayd~ed 74 (667)
++++-..|..+....+...+..++........-..|-..+|.+.-.+|+
T Consensus 30 LKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme~ 78 (79)
T COG3074 30 LKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKMEE 78 (79)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3333333444444444433333333222234445788888877776665
No 283
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=20.10 E-value=4.9e+02 Score=26.34 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=30.5
Q ss_pred CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 038110 176 KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGE 216 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 216 (667)
..||||+|-+++-... ..-..++||+.-..|++..+.+-
T Consensus 70 gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~l 108 (279)
T COG0468 70 SSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQL 108 (279)
T ss_pred CcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHHH
Confidence 4688999999887666 33558999999999998876543
Done!