Query 038110
Match_columns 667
No_of_seqs 453 out of 3384
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 12:57:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.7E-34 5.9E-39 321.1 21.8 250 162-428 131-472 (549)
2 1vt4_I APAF-1 related killer D 99.9 5.2E-28 1.8E-32 272.9 12.0 235 162-415 131-420 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 4.5E-25 1.5E-29 270.2 18.3 237 157-414 122-426 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.9 3E-22 1E-26 225.6 16.9 234 158-414 123-426 (591)
5 4fcg_A Uncharacterized protein 99.8 1.6E-19 5.4E-24 187.5 11.7 200 446-659 100-312 (328)
6 4fcg_A Uncharacterized protein 99.7 7.9E-18 2.7E-22 174.7 12.9 202 449-664 80-293 (328)
7 1p9a_G Platelet glycoprotein I 99.7 1.5E-16 5.2E-21 161.9 14.1 198 447-660 7-207 (290)
8 2o6q_A Variable lymphocyte rec 99.7 5.7E-16 2E-20 156.0 15.0 174 450-659 37-216 (270)
9 1ozn_A Reticulon 4 receptor; N 99.7 4.4E-16 1.5E-20 158.2 14.1 201 447-660 29-237 (285)
10 1ogq_A PGIP-2, polygalacturona 99.7 1.4E-16 4.9E-21 164.1 10.6 197 450-660 50-280 (313)
11 1h6u_A Internalin H; cell adhe 99.7 6.9E-16 2.4E-20 158.5 15.1 191 447-660 38-229 (308)
12 2z80_A TOLL-like receptor 2, v 99.7 8.7E-16 3E-20 161.1 15.6 202 448-660 50-289 (353)
13 1ogq_A PGIP-2, polygalacturona 99.6 2.6E-16 8.9E-21 162.1 10.1 198 448-660 99-303 (313)
14 3zyi_A Leucine-rich repeat-con 99.6 1E-15 3.4E-20 166.3 13.3 204 449-659 74-301 (452)
15 3zyj_A Leucine-rich repeat-con 99.6 9.3E-16 3.2E-20 166.0 12.7 204 449-659 63-290 (440)
16 2xwt_C Thyrotropin receptor; s 99.6 5.8E-16 2E-20 152.9 9.9 201 441-660 24-238 (239)
17 2z66_A Variable lymphocyte rec 99.6 1.3E-15 4.5E-20 156.3 12.9 177 448-630 26-209 (306)
18 2z80_A TOLL-like receptor 2, v 99.6 1.7E-15 5.7E-20 158.9 13.3 203 446-660 72-313 (353)
19 3zyi_A Leucine-rich repeat-con 99.6 1.9E-15 6.4E-20 164.1 14.1 195 452-659 56-277 (452)
20 3zyj_A Leucine-rich repeat-con 99.6 2.4E-15 8.3E-20 162.7 14.0 122 452-582 45-169 (440)
21 2z62_A TOLL-like receptor 4, v 99.6 1.3E-15 4.5E-20 153.9 10.8 200 448-660 26-236 (276)
22 1ozn_A Reticulon 4 receptor; N 99.6 5.6E-15 1.9E-19 150.0 14.3 196 453-661 14-214 (285)
23 3o6n_A APL1; leucine-rich repe 99.6 3.6E-15 1.2E-19 158.6 13.2 123 450-581 45-173 (390)
24 3o6n_A APL1; leucine-rich repe 99.6 1.5E-14 5.1E-19 153.9 16.5 203 447-659 90-350 (390)
25 1xku_A Decorin; proteoglycan, 99.6 1.1E-14 3.9E-19 151.0 14.9 200 449-660 51-275 (330)
26 3oja_B Anopheles plasmodium-re 99.6 1.1E-14 3.9E-19 163.6 16.0 203 447-659 96-356 (597)
27 2ft3_A Biglycan; proteoglycan, 99.6 1E-14 3.6E-19 151.5 13.9 197 449-660 53-276 (332)
28 4fmz_A Internalin; leucine ric 99.6 3.2E-14 1.1E-18 148.6 17.4 196 442-659 58-276 (347)
29 3oja_B Anopheles plasmodium-re 99.6 7.5E-15 2.6E-19 165.1 12.9 111 448-566 73-187 (597)
30 3qfl_A MLA10; coiled-coil, (CC 99.6 2.3E-14 7.9E-19 122.6 12.4 80 4-83 1-82 (115)
31 2z66_A Variable lymphocyte rec 99.6 2.1E-15 7.2E-20 154.8 7.0 201 447-660 49-260 (306)
32 2id5_A Lingo-1, leucine rich r 99.6 1.5E-14 5E-19 158.3 14.0 199 448-660 30-260 (477)
33 3v47_A TOLL-like receptor 5B a 99.6 3.3E-14 1.1E-18 154.4 16.7 134 441-584 23-165 (455)
34 4ecn_A Leucine-rich repeat pro 99.6 7.2E-15 2.5E-19 170.0 11.4 78 499-584 549-630 (876)
35 4fmz_A Internalin; leucine ric 99.6 5.7E-14 1.9E-18 146.8 17.3 196 444-660 149-345 (347)
36 3rfs_A Internalin B, repeat mo 99.6 2.1E-14 7.1E-19 144.7 13.4 128 447-584 38-168 (272)
37 1xku_A Decorin; proteoglycan, 99.6 2.2E-14 7.4E-19 148.9 13.9 198 448-661 98-306 (330)
38 4eco_A Uncharacterized protein 99.6 2.8E-15 9.7E-20 169.7 7.5 202 447-661 203-470 (636)
39 3rgz_A Protein brassinosteroid 99.5 2E-14 6.7E-19 166.6 14.5 105 449-562 441-550 (768)
40 3m19_A Variable lymphocyte rec 99.5 2.8E-14 9.5E-19 142.0 13.3 123 452-583 16-141 (251)
41 2id5_A Lingo-1, leucine rich r 99.5 4.9E-14 1.7E-18 154.1 16.1 175 448-630 54-258 (477)
42 4ecn_A Leucine-rich repeat pro 99.5 1.9E-14 6.5E-19 166.5 13.3 149 471-630 547-707 (876)
43 2o6q_A Variable lymphocyte rec 99.5 4E-14 1.4E-18 142.5 13.9 153 446-606 57-215 (270)
44 1h6t_A Internalin B; cell adhe 99.5 2.5E-14 8.7E-19 145.5 11.9 168 447-659 43-211 (291)
45 2z62_A TOLL-like receptor 4, v 99.5 8.6E-14 2.9E-18 140.5 15.6 190 457-660 14-212 (276)
46 1wwl_A Monocyte differentiatio 99.5 9E-15 3.1E-19 150.5 8.4 195 448-661 93-309 (312)
47 3rgz_A Protein brassinosteroid 99.5 4.3E-14 1.5E-18 163.7 14.4 130 446-584 414-549 (768)
48 3rfs_A Internalin B, repeat mo 99.5 8.2E-14 2.8E-18 140.3 14.5 184 442-642 55-242 (272)
49 2ft3_A Biglycan; proteoglycan, 99.5 2.8E-14 9.7E-19 148.2 11.4 194 450-660 33-253 (332)
50 2z81_A CD282 antigen, TOLL-lik 99.5 1.1E-13 3.9E-18 153.9 16.3 179 442-630 19-206 (549)
51 4eco_A Uncharacterized protein 99.5 3.4E-14 1.2E-18 160.9 12.1 206 447-661 373-600 (636)
52 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.7E-18 153.0 15.2 162 450-660 80-242 (571)
53 3g06_A SSPH2 (leucine-rich rep 99.5 1.7E-13 5.7E-18 153.4 16.4 187 448-661 79-297 (622)
54 1o6v_A Internalin A; bacterial 99.5 1.8E-13 6.3E-18 149.0 16.2 136 442-583 60-209 (466)
55 1o6v_A Internalin A; bacterial 99.5 1.6E-13 5.5E-18 149.5 15.7 120 448-581 44-164 (466)
56 1h6u_A Internalin H; cell adhe 99.5 5.7E-14 2E-18 144.2 11.4 171 468-661 37-208 (308)
57 2xwt_C Thyrotropin receptor; s 99.5 8.4E-14 2.9E-18 137.3 11.8 187 458-660 19-217 (239)
58 3oja_A Leucine-rich immune mol 99.5 2.5E-14 8.7E-19 156.4 8.3 195 450-661 34-250 (487)
59 3j0a_A TOLL-like receptor 5; m 99.5 1.5E-13 5.2E-18 160.8 15.3 134 441-584 17-159 (844)
60 3vq2_A TLR4, TOLL-like recepto 99.5 1.5E-13 5E-18 155.0 14.5 202 442-657 25-238 (606)
61 3vq2_A TLR4, TOLL-like recepto 99.5 1.1E-13 3.8E-18 156.0 12.9 182 470-659 348-556 (606)
62 2z81_A CD282 antigen, TOLL-lik 99.5 1.1E-13 3.7E-18 154.1 12.6 193 449-660 309-509 (549)
63 3bz5_A Internalin-J, INLJ; leu 99.5 2.3E-13 7.7E-18 147.6 14.5 186 444-660 58-245 (457)
64 1ziw_A TOLL-like receptor 3; i 99.5 3E-13 1E-17 154.7 16.0 129 448-584 23-156 (680)
65 1p9a_G Platelet glycoprotein I 99.5 1.6E-13 5.6E-18 139.4 11.7 174 470-660 8-184 (290)
66 3bz5_A Internalin-J, INLJ; leu 99.5 5.4E-13 1.9E-17 144.5 16.3 161 446-630 81-243 (457)
67 2z7x_B TOLL-like receptor 1, v 99.5 2.6E-13 8.8E-18 150.0 13.3 122 450-584 21-149 (520)
68 1m9s_A Internalin B; cell inva 99.5 1.2E-13 4.1E-18 154.3 10.4 167 447-630 40-207 (605)
69 3v47_A TOLL-like receptor 5B a 99.5 3E-13 1E-17 146.8 13.3 113 544-660 293-407 (455)
70 2z63_A TOLL-like receptor 4, v 99.4 1.2E-13 4E-18 154.5 9.9 128 448-583 26-159 (570)
71 3o53_A Protein LRIM1, AGAP0063 99.4 5.5E-14 1.9E-18 145.0 6.2 190 450-661 58-250 (317)
72 3t6q_A CD180 antigen; protein- 99.4 5.9E-13 2E-17 150.1 14.6 208 448-661 276-513 (606)
73 3o53_A Protein LRIM1, AGAP0063 99.4 4.8E-14 1.6E-18 145.4 5.2 189 449-661 33-227 (317)
74 2z7x_B TOLL-like receptor 1, v 99.4 6.1E-13 2.1E-17 147.0 14.2 195 447-660 273-480 (520)
75 3t6q_A CD180 antigen; protein- 99.4 4.1E-13 1.4E-17 151.3 12.8 204 448-662 299-537 (606)
76 4glp_A Monocyte differentiatio 99.4 1.1E-13 3.7E-18 142.3 7.3 198 449-661 90-307 (310)
77 1ziw_A TOLL-like receptor 3; i 99.4 5.6E-13 1.9E-17 152.4 13.6 123 451-581 382-512 (680)
78 1wwl_A Monocyte differentiatio 99.4 6.3E-15 2.1E-19 151.7 -2.6 175 471-659 94-285 (312)
79 2z63_A TOLL-like receptor 4, v 99.4 4.5E-13 1.5E-17 149.7 12.1 200 448-660 323-530 (570)
80 4g8a_A TOLL-like receptor 4; l 99.4 1.2E-12 4E-17 148.1 15.2 201 442-656 45-257 (635)
81 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.2E-12 3.9E-17 146.3 14.8 123 449-582 51-178 (562)
82 2o6s_A Variable lymphocyte rec 99.4 1.8E-12 6.2E-17 124.8 13.6 159 449-649 27-190 (208)
83 3g06_A SSPH2 (leucine-rich rep 99.4 1.7E-12 5.9E-17 145.1 15.4 98 450-568 61-159 (622)
84 3j0a_A TOLL-like receptor 5; m 99.4 1.3E-12 4.5E-17 152.9 14.7 192 453-659 7-215 (844)
85 2v9t_B SLIT homolog 2 protein 99.4 1.5E-12 5E-17 126.7 12.3 123 453-584 14-139 (220)
86 3e6j_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 126.6 12.1 124 449-581 39-167 (229)
87 1xeu_A Internalin C; cellular 99.4 2.9E-13 9.9E-18 135.5 6.1 119 448-581 39-158 (263)
88 2v70_A SLIT-2, SLIT homolog 2 99.4 2.3E-12 8E-17 125.2 12.2 122 453-583 14-139 (220)
89 2ast_B S-phase kinase-associat 99.4 1.5E-13 5.3E-18 142.7 3.4 195 450-658 70-282 (336)
90 3m19_A Variable lymphocyte rec 99.4 6.1E-12 2.1E-16 124.9 14.8 153 448-608 33-191 (251)
91 4g8a_A TOLL-like receptor 4; l 99.4 1.9E-12 6.6E-17 146.4 12.2 188 458-659 39-235 (635)
92 4ezg_A Putative uncharacterize 99.3 4.6E-12 1.6E-16 120.8 12.4 125 447-583 41-169 (197)
93 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 5.7E-12 2E-16 140.6 14.4 174 472-660 331-509 (562)
94 4ay9_X Follicle-stimulating ho 99.3 1.4E-12 4.8E-17 136.4 8.8 200 449-662 29-237 (350)
95 1jl5_A Outer protein YOPM; leu 99.3 7.9E-12 2.7E-16 135.2 15.0 177 450-659 111-288 (454)
96 3e6j_A Variable lymphocyte rec 99.3 8.6E-12 2.9E-16 122.0 13.8 148 451-607 20-170 (229)
97 4ay9_X Follicle-stimulating ho 99.3 3.3E-12 1.1E-16 133.5 11.3 193 453-660 12-214 (350)
98 2v9t_B SLIT homolog 2 protein 99.3 6.8E-12 2.3E-16 121.9 12.5 129 448-584 30-163 (220)
99 2xot_A Amphoterin-induced prot 99.3 7.7E-12 2.6E-16 131.3 13.2 128 449-584 38-174 (361)
100 1jl5_A Outer protein YOPM; leu 99.3 1.5E-11 5E-16 133.1 15.3 156 450-630 131-287 (454)
101 3cvr_A Invasion plasmid antige 99.3 5.9E-12 2E-16 139.2 12.3 140 442-607 94-241 (571)
102 2ca6_A RAN GTPase-activating p 99.3 1E-12 3.4E-17 139.5 5.9 204 448-661 58-316 (386)
103 2o6s_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 119.5 12.3 106 448-561 50-159 (208)
104 3oja_A Leucine-rich immune mol 99.3 3.1E-12 1.1E-16 139.8 9.2 181 470-660 32-226 (487)
105 4ezg_A Putative uncharacterize 99.3 8.2E-12 2.8E-16 119.1 11.0 132 442-584 58-192 (197)
106 2v70_A SLIT-2, SLIT homolog 2 99.3 8.2E-12 2.8E-16 121.3 10.6 129 448-584 30-164 (220)
107 4b8c_D Glucose-repressible alc 99.3 5.2E-12 1.8E-16 144.6 9.5 102 470-581 222-324 (727)
108 2ca6_A RAN GTPase-activating p 99.3 1.2E-12 4E-17 138.9 3.0 208 447-661 29-287 (386)
109 1h6t_A Internalin B; cell adhe 99.3 3.5E-11 1.2E-15 122.2 13.7 149 442-605 60-209 (291)
110 1xeu_A Internalin C; cellular 99.2 2.2E-11 7.4E-16 121.8 11.4 128 442-584 55-183 (263)
111 1a9n_A U2A', U2A'; complex (nu 99.2 3.8E-12 1.3E-16 119.1 5.4 127 447-584 16-151 (176)
112 2xot_A Amphoterin-induced prot 99.2 1.1E-11 3.9E-16 130.0 9.7 169 453-630 21-199 (361)
113 2ell_A Acidic leucine-rich nuc 99.2 6.8E-12 2.3E-16 116.3 7.0 128 449-585 23-159 (168)
114 4glp_A Monocyte differentiatio 99.2 4.4E-12 1.5E-16 130.2 6.0 171 447-630 114-304 (310)
115 1m9s_A Internalin B; cell inva 99.2 3.7E-11 1.3E-15 134.2 13.7 152 442-608 57-209 (605)
116 2wfh_A SLIT homolog 2 protein 99.2 4.8E-11 1.6E-15 113.3 12.3 122 453-584 13-137 (193)
117 2ast_B S-phase kinase-associat 99.2 2.5E-12 8.6E-17 133.5 3.4 196 451-661 48-260 (336)
118 1w8a_A SLIT protein; signaling 99.2 3.6E-11 1.2E-15 114.1 9.7 122 453-583 11-136 (192)
119 2o6r_A Variable lymphocyte rec 99.2 9E-11 3.1E-15 109.7 11.8 123 452-583 9-134 (177)
120 2je0_A Acidic leucine-rich nuc 99.2 1.4E-11 4.8E-16 111.7 4.9 123 449-580 16-147 (149)
121 1dce_A Protein (RAB geranylger 99.2 4.5E-11 1.5E-15 132.7 9.8 118 451-579 442-566 (567)
122 2ell_A Acidic leucine-rich nuc 99.2 1.5E-10 5.3E-15 107.0 11.6 113 447-568 46-165 (168)
123 4b8c_D Glucose-repressible alc 99.2 3.2E-11 1.1E-15 138.1 8.1 112 447-568 221-334 (727)
124 3goz_A Leucine-rich repeat-con 99.1 4.1E-11 1.4E-15 125.8 6.4 14 498-511 80-93 (362)
125 2je0_A Acidic leucine-rich nuc 99.1 6.3E-11 2.2E-15 107.3 6.3 102 471-581 16-121 (149)
126 2r9u_A Variable lymphocyte rec 99.1 2.8E-10 9.4E-15 106.0 9.6 106 453-568 15-123 (174)
127 3goz_A Leucine-rich repeat-con 99.0 1.7E-10 5.8E-15 121.1 7.0 196 456-660 4-237 (362)
128 1a9n_A U2A', U2A'; complex (nu 99.0 2.9E-10 1E-14 106.1 7.9 111 444-563 35-153 (176)
129 1dce_A Protein (RAB geranylger 99.0 4.3E-10 1.5E-14 124.7 10.5 117 452-584 425-544 (567)
130 1ds9_A Outer arm dynein; leuci 99.0 1.1E-11 3.9E-16 118.2 -2.4 102 472-583 23-125 (198)
131 2wfh_A SLIT homolog 2 protein 99.0 5.5E-10 1.9E-14 105.9 9.2 108 448-563 29-139 (193)
132 1z7x_W Ribonuclease inhibitor; 99.0 7.3E-11 2.5E-15 128.1 2.9 82 448-530 26-122 (461)
133 2o6r_A Variable lymphocyte rec 99.0 1.5E-09 5E-14 101.4 11.0 111 448-566 26-140 (177)
134 3g39_A Variable lymphocyte rec 99.0 9.1E-10 3.1E-14 102.1 9.4 105 453-566 12-118 (170)
135 1w8a_A SLIT protein; signaling 99.0 1.1E-09 3.9E-14 103.6 9.3 106 449-563 28-139 (192)
136 1z7x_W Ribonuclease inhibitor; 98.9 9.1E-11 3.1E-15 127.3 0.1 198 449-660 169-410 (461)
137 2r9u_A Variable lymphocyte rec 98.9 2.3E-09 8E-14 99.7 9.3 100 474-584 14-116 (174)
138 3g39_A Variable lymphocyte rec 98.9 3E-09 1E-13 98.6 9.0 101 473-584 10-113 (170)
139 1ds9_A Outer arm dynein; leuci 98.8 5.4E-11 1.9E-15 113.4 -6.9 109 447-564 45-154 (198)
140 3ogk_B Coronatine-insensitive 98.8 5.4E-09 1.8E-13 117.1 8.1 198 449-658 163-388 (592)
141 3ogk_B Coronatine-insensitive 98.8 2.4E-09 8.3E-14 120.0 5.2 198 448-658 190-413 (592)
142 1w5s_A Origin recognition comp 98.7 1.4E-06 4.7E-11 92.7 23.0 222 159-380 22-337 (412)
143 3sb4_A Hypothetical leucine ri 98.7 3.2E-08 1.1E-12 102.1 8.4 197 449-654 48-327 (329)
144 2ifg_A High affinity nerve gro 98.6 7.4E-08 2.5E-12 100.1 9.5 101 455-564 13-117 (347)
145 2ifg_A High affinity nerve gro 98.6 9.1E-08 3.1E-12 99.4 9.4 97 477-583 13-113 (347)
146 2p1m_B Transport inhibitor res 98.5 8.6E-09 2.9E-13 115.5 -0.3 82 449-530 104-193 (594)
147 2p1m_B Transport inhibitor res 98.4 4.1E-08 1.4E-12 109.9 2.2 206 448-656 154-405 (594)
148 2fna_A Conserved hypothetical 98.4 2.1E-06 7.2E-11 89.2 12.8 205 157-367 11-301 (357)
149 2qen_A Walker-type ATPase; unk 98.4 1.6E-06 5.6E-11 89.8 11.6 168 157-332 10-250 (350)
150 4fdw_A Leucine rich hypothetic 98.1 1.3E-05 4.4E-10 84.7 12.8 98 451-558 136-234 (401)
151 3un9_A NLR family member X1; l 98.1 2.8E-07 9.6E-12 96.5 -0.5 125 449-581 71-219 (372)
152 3un9_A NLR family member X1; l 98.1 3.3E-07 1.1E-11 96.0 -1.3 156 471-630 71-249 (372)
153 4fdw_A Leucine rich hypothetic 98.0 1.3E-05 4.4E-10 84.7 10.4 193 447-657 177-379 (401)
154 3sb4_A Hypothetical leucine ri 98.0 6.9E-06 2.4E-10 84.5 7.8 100 471-579 225-327 (329)
155 2qby_B CDC6 homolog 3, cell di 97.9 6.2E-05 2.1E-09 79.0 13.2 187 159-346 20-270 (384)
156 1njg_A DNA polymerase III subu 97.9 5.8E-05 2E-09 73.3 12.0 89 243-331 125-231 (250)
157 2ra8_A Uncharacterized protein 97.8 1.8E-05 6.1E-10 82.2 6.0 82 470-559 137-228 (362)
158 2v1u_A Cell division control p 97.8 0.00028 9.4E-09 73.9 15.3 208 159-366 19-300 (387)
159 2qby_A CDC6 homolog 1, cell di 97.7 0.00013 4.3E-09 76.5 11.6 188 159-346 20-272 (386)
160 2chg_A Replication factor C sm 97.7 0.00038 1.3E-08 66.3 13.5 156 157-327 15-203 (226)
161 1fnn_A CDC6P, cell division co 97.7 0.0078 2.7E-07 62.8 24.3 248 159-414 17-350 (389)
162 2ra8_A Uncharacterized protein 97.3 0.00014 4.8E-09 75.4 4.3 101 470-582 170-288 (362)
163 3rw6_A Nuclear RNA export fact 97.2 0.00022 7.4E-09 70.3 4.7 35 495-530 193-229 (267)
164 1io0_A Tropomodulin; LRR prote 97.1 0.00012 4E-09 68.3 1.8 36 495-530 62-102 (185)
165 1io0_A Tropomodulin; LRR prote 97.1 0.00013 4.5E-09 67.9 1.6 106 449-562 35-163 (185)
166 1sxj_B Activator 1 37 kDa subu 97.1 0.0019 6.4E-08 65.6 10.0 160 157-330 19-212 (323)
167 3rw6_A Nuclear RNA export fact 97.0 0.00035 1.2E-08 68.8 3.9 79 494-578 166-256 (267)
168 1hqc_A RUVB; extended AAA-ATPa 96.5 0.014 4.7E-07 59.2 11.8 91 272-363 138-254 (324)
169 3e4g_A ATP synthase subunit S, 96.4 0.003 1E-07 57.6 5.1 82 472-561 61-150 (176)
170 3e4g_A ATP synthase subunit S, 96.4 0.0081 2.8E-07 54.7 7.7 39 620-662 114-153 (176)
171 1iqp_A RFCS; clamp loader, ext 96.2 0.0059 2E-07 62.0 6.6 159 158-331 24-215 (327)
172 2chq_A Replication factor C sm 95.1 0.12 4.2E-06 51.8 11.6 135 158-310 16-171 (319)
173 1jr3_A DNA polymerase III subu 94.7 0.17 5.9E-06 52.0 11.6 86 243-328 118-221 (373)
174 3te6_A Regulatory protein SIR3 94.1 0.51 1.7E-05 47.3 12.9 157 161-317 22-215 (318)
175 3rfe_A Platelet glycoprotein I 93.9 0.076 2.6E-06 45.8 5.7 15 500-514 33-47 (130)
176 3rfe_A Platelet glycoprotein I 93.9 0.074 2.5E-06 45.8 5.5 55 454-511 12-68 (130)
177 4gt6_A Cell surface protein; l 93.7 0.095 3.3E-06 54.7 7.1 82 491-580 258-341 (394)
178 4h09_A Hypothetical leucine ri 93.4 0.17 5.7E-06 52.4 8.2 98 470-578 238-338 (379)
179 4gt6_A Cell surface protein; l 93.3 0.23 7.9E-06 51.7 9.2 101 470-581 263-365 (394)
180 4fs7_A Uncharacterized protein 92.8 0.37 1.3E-05 50.1 9.9 85 489-581 288-374 (394)
181 1d2n_A N-ethylmaleimide-sensit 92.5 0.47 1.6E-05 46.4 9.7 107 243-349 123-264 (272)
182 3h4m_A Proteasome-activating n 92.0 1 3.5E-05 44.2 11.6 134 157-310 15-198 (285)
183 4h09_A Hypothetical leucine ri 91.7 0.29 1E-05 50.5 7.5 102 470-581 215-318 (379)
184 1xwi_A SKD1 protein; VPS4B, AA 91.5 2.8 9.7E-05 42.0 14.3 136 157-310 10-189 (322)
185 1jbk_A CLPB protein; beta barr 91.1 0.38 1.3E-05 43.7 6.8 34 158-191 21-68 (195)
186 4fs7_A Uncharacterized protein 90.6 0.25 8.5E-06 51.4 5.6 97 470-577 295-392 (394)
187 3d8b_A Fidgetin-like protein 1 90.3 3 0.0001 42.5 13.4 134 157-310 82-261 (357)
188 2zan_A Vacuolar protein sortin 89.9 5.8 0.0002 41.8 15.5 137 156-310 131-311 (444)
189 3eie_A Vacuolar protein sortin 89.4 3 0.0001 41.7 12.4 135 156-310 15-194 (322)
190 1a5t_A Delta prime, HOLB; zinc 89.1 2.3 7.8E-05 42.9 11.2 84 243-326 107-203 (334)
191 2qz4_A Paraplegin; AAA+, SPG7, 88.9 4.9 0.00017 38.5 13.1 68 243-310 97-187 (262)
192 2qp9_X Vacuolar protein sortin 88.8 3.3 0.00011 42.1 12.3 134 158-310 50-227 (355)
193 3u61_B DNA polymerase accessor 88.3 2.3 7.8E-05 42.6 10.6 134 156-310 23-175 (324)
194 1sxj_A Activator 1 95 kDa subu 87.9 1 3.6E-05 48.6 8.1 164 156-329 36-254 (516)
195 2z4s_A Chromosomal replication 86.7 0.55 1.9E-05 49.6 5.0 116 178-310 142-273 (440)
196 3vfd_A Spastin; ATPase, microt 85.9 10 0.00036 38.9 14.3 36 156-191 112-173 (389)
197 4b4t_J 26S protease regulatory 84.3 14 0.00048 38.0 13.9 138 154-310 143-329 (405)
198 1sxj_D Activator 1 41 kDa subu 82.5 1.6 5.5E-05 44.1 6.2 164 157-325 35-232 (353)
199 3pfi_A Holliday junction ATP-d 82.3 8 0.00027 38.7 11.3 35 157-191 27-80 (338)
200 3pvs_A Replication-associated 81.3 15 0.0005 38.6 13.1 71 243-314 105-179 (447)
201 3bos_A Putative DNA replicatio 80.7 0.26 8.9E-06 46.9 -0.7 107 178-310 64-184 (242)
202 3syl_A Protein CBBX; photosynt 80.3 1.4 4.8E-05 43.7 4.6 70 245-314 131-218 (309)
203 3b9p_A CG5977-PA, isoform A; A 80.0 35 0.0012 33.1 14.9 35 157-191 19-79 (297)
204 4b4t_H 26S protease regulatory 79.4 28 0.00095 36.5 14.1 138 154-310 204-390 (467)
205 1sxj_E Activator 1 40 kDa subu 78.2 17 0.0006 36.3 12.3 67 244-310 134-203 (354)
206 2w58_A DNAI, primosome compone 78.1 0.97 3.3E-05 41.7 2.4 89 177-282 65-159 (202)
207 3uk6_A RUVB-like 2; hexameric 77.1 11 0.00038 38.1 10.5 18 293-310 252-269 (368)
208 4b4t_L 26S protease subunit RP 77.1 17 0.00059 37.9 11.8 138 154-310 176-362 (437)
209 1pgv_A TMD-1, tropomodulin TMD 76.1 1.9 6.5E-05 39.8 3.7 15 548-562 96-110 (197)
210 3cf0_A Transitional endoplasmi 74.6 21 0.00073 35.0 11.4 135 157-310 13-196 (301)
211 4b4t_M 26S protease regulatory 74.3 19 0.00066 37.4 11.3 138 154-310 176-362 (434)
212 4b4t_I 26S protease regulatory 73.6 40 0.0014 34.9 13.3 137 154-310 177-363 (437)
213 3ec2_A DNA replication protein 73.0 1.1 3.9E-05 40.4 1.4 90 177-282 49-143 (180)
214 1sxj_C Activator 1 40 kDa subu 71.2 15 0.0005 36.9 9.4 140 156-310 22-179 (340)
215 1qvr_A CLPB protein; coiled co 71.0 13 0.00045 42.7 10.0 140 156-310 167-342 (854)
216 3pxg_A Negative regulator of g 70.6 17 0.00059 38.3 10.2 133 157-310 178-335 (468)
217 3n70_A Transport activator; si 69.6 1.6 5.4E-05 37.9 1.5 37 246-282 78-116 (145)
218 4b4t_K 26S protease regulatory 69.2 49 0.0017 34.3 12.9 37 155-191 168-231 (428)
219 3pxi_A Negative regulator of g 68.8 17 0.00057 41.2 10.2 135 156-310 177-335 (758)
220 1pgv_A TMD-1, tropomodulin TMD 64.6 4.8 0.00016 37.0 3.7 83 470-560 39-136 (197)
221 1r6b_X CLPA protein; AAA+, N-t 59.9 45 0.0015 37.5 11.5 140 156-310 183-359 (758)
222 2r62_A Cell division protease 58.4 10 0.00035 36.4 5.1 68 243-310 102-193 (268)
223 1l8q_A Chromosomal replication 53.9 15 0.00053 36.3 5.7 116 177-310 48-176 (324)
224 2p65_A Hypothetical protein PF 53.6 19 0.00064 31.8 5.8 34 158-191 21-68 (187)
225 2gno_A DNA polymerase III, gam 50.0 32 0.0011 33.9 7.2 114 178-310 30-149 (305)
226 3hu3_A Transitional endoplasmi 47.9 65 0.0022 34.0 9.6 135 157-310 202-382 (489)
227 3a7p_A Autophagy protein 16; c 46.6 78 0.0027 27.2 7.8 23 54-76 126-148 (152)
228 2ce7_A Cell division protein F 45.9 1.2E+02 0.004 32.0 11.1 68 243-310 107-196 (476)
229 3cf2_A TER ATPase, transitiona 43.6 1.8E+02 0.006 32.9 12.6 80 242-321 295-407 (806)
230 3okq_A BUD site selection prot 36.8 1.4E+02 0.0049 25.2 7.9 23 23-45 56-78 (141)
231 3co5_A Putative two-component 36.3 5.2 0.00018 34.4 -1.0 30 161-190 6-51 (143)
232 1lv7_A FTSH; alpha/beta domain 34.4 2.8E+02 0.0097 25.6 14.5 39 272-310 150-192 (257)
233 2ck3_D ATP synthase subunit be 32.0 87 0.003 32.8 7.2 78 178-256 165-265 (482)
234 4fcw_A Chaperone protein CLPB; 29.0 73 0.0025 30.8 6.0 74 177-256 58-131 (311)
235 1jr3_D DNA polymerase III, del 28.8 76 0.0026 31.4 6.2 84 243-326 75-183 (343)
236 4akg_A Glutathione S-transfera 27.7 4.3E+02 0.015 34.4 13.7 224 177-411 1278-1537(2695)
237 1n0w_A DNA repair protein RAD5 26.4 2.5E+02 0.0086 25.5 9.1 79 176-255 34-130 (243)
238 3ro3_B Minsc, peptide of prote 26.2 41 0.0014 18.2 1.8 13 56-68 8-20 (22)
239 3mtu_A Tropomyosin alpha-1 cha 25.6 71 0.0024 24.0 3.8 32 36-74 38-69 (75)
240 2x8a_A Nuclear valosin-contain 24.6 4.5E+02 0.015 24.8 11.2 67 243-309 102-187 (274)
241 3viq_A SWI5-dependent recombin 24.6 3E+02 0.01 22.7 9.2 55 22-76 8-63 (122)
242 2lw1_A ABC transporter ATP-bin 24.2 2.4E+02 0.0084 21.6 8.1 65 12-79 15-79 (89)
243 1fx0_B ATP synthase beta chain 22.2 1.6E+02 0.0054 31.0 7.0 77 178-255 177-277 (498)
244 3vr4_D V-type sodium ATPase su 21.8 1.3E+02 0.0046 31.3 6.3 76 178-255 163-259 (465)
245 4gow_A Potassium voltage-gated 21.7 19 0.00066 26.0 0.0 32 69-114 34-65 (72)
246 2dhr_A FTSH; AAA+ protein, hex 21.5 4.9E+02 0.017 27.3 10.9 39 272-310 169-211 (499)
247 2z43_A DNA repair and recombin 20.7 2.6E+02 0.0091 27.2 8.3 47 176-223 117-167 (324)
248 2i1q_A DNA repair and recombin 20.7 2.3E+02 0.0079 27.5 7.9 47 176-223 108-168 (322)
249 1v5w_A DMC1, meiotic recombina 20.4 4E+02 0.014 26.2 9.6 47 176-223 132-182 (343)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.7e-34 Score=321.05 Aligned_cols=250 Identities=12% Similarity=0.095 Sum_probs=190.9
Q ss_pred cchHHHHHHHHHhcCC-----------------CCcHHHHHHHH--HhccCCCCCEEEEEEeCCCC--CHHHHHHHHHHH
Q 038110 162 ESRMSTLNDILGALKN-----------------PDTTLAKEVAW--KAENDKLFDQAVFAEVSQSH--DIRKIQGEIADK 220 (667)
Q Consensus 162 ~gr~~~~~~i~~~l~~-----------------~~TtLa~~vy~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~ 220 (667)
+||+.++++|.++|.. ||||||++||+ +.+++.+|++++||+|++.+ ++..+++.|+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 4999999999998742 46999999999 67888999999999999985 899999999999
Q ss_pred hCCCCC--C--C---ChhH-HHH-HHHHHhcCC-eEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhhhhhccC
Q 038110 221 LGLTFH--E--E---SESG-RAS-LCNQLKKNK-TILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDTLSRKMD 290 (667)
Q Consensus 221 l~~~~~--~--~---~~~~-~~~-l~~~L~~~k-r~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~va~~~~~ 290 (667)
++.... . . .+.+ ... +++.|. +| ||||||||||+..++ .+ + ..+||+||||||++.|+. .++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~-~~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISN-AAS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGG-GCC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHc-CCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHH-HcC
Confidence 986532 1 1 1112 234 899998 65 999999999998754 11 1 127999999999999985 344
Q ss_pred -CcceEecCCCCHHHHHHHHH----------------HHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHH-h------
Q 038110 291 -SKQNFSVGILKEEEAWSGEF----------------KWVAKECAGLPVSIVTVSRALRNKSLFEWKDALQQ-L------ 346 (667)
Q Consensus 291 -~~~~~~l~~L~~~~s~~Lf~----------------~~i~~~c~GlPLai~~~g~~L~~k~~~~W~~~l~~-l------ 346 (667)
...+|+|++|++++||+||. ++|+++|+|+||||+++|+.|+.++. +|...+.+ +
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~ 361 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLV 361 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHH
Confidence 44689999999999999998 78999999999999999999987643 33333332 2
Q ss_pred -----cCCCCcCchHHHHHHHH-----------HHhhh---hcccHHHHHHHHhHc--CCCCC---cccHHHHHHHHHHH
Q 038110 347 -----RRPISTNFKDELKQIFL-----------LIGYT---YVAFIDDLIWYSIGL--GLFQG---IKNMEEARAGVRTL 402 (667)
Q Consensus 347 -----~~~~~~~l~~~lk~cfl-----------y~s~f---~~i~~~~Li~~Wiae--g~i~~---~~~~e~~~~~~~~l 402 (667)
...+|+++|+++|.||+ |||+| +.|+ +++|+|+ ||+.+ ..+.+++.+++.+|
T Consensus 362 ~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 362 GVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp TTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 14578899999999999 99999 7777 8999999 99974 33456655455555
Q ss_pred HHHHHHccccccCC---------c----chhhhhccccc
Q 038110 403 VNKLKASCMLLDDD---------E----NISISIASREQ 428 (667)
Q Consensus 403 i~~L~~~~l~~~~~---------~----dl~~~~~~~~~ 428 (667)
++ +||++... | ++|++++.+++
T Consensus 438 ~~----rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SK----RGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TT----BSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HH----cCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 54 99998642 1 66666665543
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.95 E-value=5.2e-28 Score=272.90 Aligned_cols=235 Identities=16% Similarity=0.151 Sum_probs=180.4
Q ss_pred cchHHHHHHHHHhcCC---------------CCcHHHHHHHHHhccCCCCCE-EEEEEeCCCCCHHHHHHHHHHHhCC--
Q 038110 162 ESRMSTLNDILGALKN---------------PDTTLAKEVAWKAENDKLFDQ-AVFAEVSQSHDIRKIQGEIADKLGL-- 223 (667)
Q Consensus 162 ~gr~~~~~~i~~~l~~---------------~~TtLa~~vy~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~~-- 223 (667)
+||+.++++|.++|.. ||||||+.+|++.+++.+|+. ++||++++.++...++..|++.++.
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~ 210 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcC
Confidence 7999999999888742 569999999998877789987 9999999999999998888775321
Q ss_pred -CCCCC-----C---hhHH-HH-HHHHHh--cCCeEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhhhhhccC
Q 038110 224 -TFHEE-----S---ESGR-AS-LCNQLK--KNKTILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDTLSRKMD 290 (667)
Q Consensus 224 -~~~~~-----~---~~~~-~~-l~~~L~--~~kr~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~va~~~~~ 290 (667)
..... . ..+. .. +++.|+ .+||+||||||||+.+.|+.+. .||+||||||++.++. .+.
T Consensus 211 ~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~-~l~ 282 (1221)
T 1vt4_I 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD-FLS 282 (1221)
T ss_dssp SSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH-HHH
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH-hcC
Confidence 11100 0 1111 22 666551 2799999999999998888651 6999999999999974 222
Q ss_pred CcceEecC------CCCHHHHHHHHH--------HHHHHHhCCcchHHHHHHHHHccC--ChHHHHHH----HHHhcCCC
Q 038110 291 SKQNFSVG------ILKEEEAWSGEF--------KWVAKECAGLPVSIVTVSRALRNK--SLFEWKDA----LQQLRRPI 350 (667)
Q Consensus 291 ~~~~~~l~------~L~~~~s~~Lf~--------~~i~~~c~GlPLai~~~g~~L~~k--~~~~W~~~----l~~l~~~~ 350 (667)
....|.++ +|+.+|||+||+ ....+.|+|+||||+++|+.|+++ +.++|+.. +......+
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelS 362 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHH
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHH
Confidence 23456777 999999999998 223356999999999999999976 78899753 23334567
Q ss_pred CcCchHHH-HHHHHHHhhh---hcccHHHHHHHHhHcCCCCCcccHHHHHHHHHHHHHHHHHccccccC
Q 038110 351 STNFKDEL-KQIFLLIGYT---YVAFIDDLIWYSIGLGLFQGIKNMEEARAGVRTLVNKLKASCMLLDD 415 (667)
Q Consensus 351 ~~~l~~~l-k~cfly~s~f---~~i~~~~Li~~Wiaeg~i~~~~~~e~~~~~~~~li~~L~~~~l~~~~ 415 (667)
|+.+|+++ |.||+|||+| +.|+.+.++.+|+++| .++++ +++++|+++||++..
T Consensus 363 Yd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-------eedAe----~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-------KSDVM----VVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-------SHHHH----HHHHHHHTSSSSSBC
T ss_pred HHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-------HHHHH----HHHHHHHhhCCEEEe
Confidence 78888898 9999999999 7899999999999988 12344 445555569999864
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=4.5e-25 Score=270.15 Aligned_cols=237 Identities=19% Similarity=0.233 Sum_probs=183.7
Q ss_pred CcccccchHHHHHHHHHhcCC----------------CCcHHHHHHHHHhcc-CCCC-CEEEEEEeCCCCC--HHHHHHH
Q 038110 157 DYEAFESRMSTLNDILGALKN----------------PDTTLAKEVAWKAEN-DKLF-DQAVFAEVSQSHD--IRKIQGE 216 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~~----------------~~TtLa~~vy~~~~~-~~~F-~~~~wv~vs~~~~--~~~i~~~ 216 (667)
....|+||++++++|.++|.. ||||||+++|++.++ ..+| +.++||++++.++ ....++.
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 445699999999999998831 469999999998643 4555 6688999998553 4555777
Q ss_pred HHHHhCCCCCC----CChhH-HHH-HHHHHhcCC--eEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhhhhhc
Q 038110 217 IADKLGLTFHE----ESESG-RAS-LCNQLKKNK--TILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDTLSRK 288 (667)
Q Consensus 217 i~~~l~~~~~~----~~~~~-~~~-l~~~L~~~k--r~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~va~~~ 288 (667)
++..+...... ....+ ... ++..|. +| ||||||||||+..+|+.+ ++||+||||||++.|+...
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHh-ccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 88887754321 11222 223 777776 55 999999999999888764 5789999999999997444
Q ss_pred cCCcceEecCC-CCHHHHHHHHH--------------HHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHhcCC----
Q 038110 289 MDSKQNFSVGI-LKEEEAWSGEF--------------KWVAKECAGLPVSIVTVSRALRNKSLFEWKDALQQLRRP---- 349 (667)
Q Consensus 289 ~~~~~~~~l~~-L~~~~s~~Lf~--------------~~i~~~c~GlPLai~~~g~~L~~k~~~~W~~~l~~l~~~---- 349 (667)
++....+.+.+ |++++||+||. ++|+++|+|+||||+.+|+.|+.+. ..|...++.+...
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~ 352 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKR 352 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhh
Confidence 66778899996 99999999998 7899999999999999999999765 4688888776432
Q ss_pred ------------------CCcCchHHHHHHHHHHhhh---hcccHHHHHHHHhHcCCCCCcccHHHHHHHHHHHHHHHHH
Q 038110 350 ------------------ISTNFKDELKQIFLLIGYT---YVAFIDDLIWYSIGLGLFQGIKNMEEARAGVRTLVNKLKA 408 (667)
Q Consensus 350 ------------------~~~~l~~~lk~cfly~s~f---~~i~~~~Li~~Wiaeg~i~~~~~~e~~~~~~~~li~~L~~ 408 (667)
+|+.+|+++|.||+|||+| +.|++..++.+|.+++ ++++. ++++|++
T Consensus 353 ~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~~~~~----~l~~L~~ 420 (1249)
T 3sfz_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET--------EEVED----ILQEFVN 420 (1249)
T ss_dssp SSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------HHHHH----HHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH--------HHHHH----HHHHHHh
Confidence 2455689999999999999 7899999999997652 33444 4445555
Q ss_pred cccccc
Q 038110 409 SCMLLD 414 (667)
Q Consensus 409 ~~l~~~ 414 (667)
++|++.
T Consensus 421 ~sl~~~ 426 (1249)
T 3sfz_A 421 KSLLFC 426 (1249)
T ss_dssp TTSCEE
T ss_pred ccceEE
Confidence 888864
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=225.56 Aligned_cols=234 Identities=19% Similarity=0.264 Sum_probs=172.3
Q ss_pred cccccchHHHHHHHHHhcCC----------------CCcHHHHHHHHHhcc-CCCC-CEEEEEEeCCCCCHHHHHHHH--
Q 038110 158 YEAFESRMSTLNDILGALKN----------------PDTTLAKEVAWKAEN-DKLF-DQAVFAEVSQSHDIRKIQGEI-- 217 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~----------------~~TtLa~~vy~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~~i-- 217 (667)
...|+||+.++++|.++|.. ||||||+.+|++..+ ..+| +.++||+++.. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 45689999999999998852 469999999988654 5779 58999999875 444444444
Q ss_pred -HHHhCCCC----CCCChhH-HHH-HHHHHhc-CCeEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhhhhhcc
Q 038110 218 -ADKLGLTF----HEESESG-RAS-LCNQLKK-NKTILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDTLSRKM 289 (667)
Q Consensus 218 -~~~l~~~~----~~~~~~~-~~~-l~~~L~~-~kr~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~va~~~~ 289 (667)
+..++... ......+ ... +.+.+.. ++++||||||||+...++.+ +.||+||||||+..++.. +
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~-~ 273 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDS-V 273 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTT-C
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHh-c
Confidence 44555211 1112222 223 7777762 27899999999997766543 468999999999998742 2
Q ss_pred CCcceEec---CCCCHHHHHHHHH--------------HHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHhcCC---
Q 038110 290 DSKQNFSV---GILKEEEAWSGEF--------------KWVAKECAGLPVSIVTVSRALRNKSLFEWKDALQQLRRP--- 349 (667)
Q Consensus 290 ~~~~~~~l---~~L~~~~s~~Lf~--------------~~i~~~c~GlPLai~~~g~~L~~k~~~~W~~~l~~l~~~--- 349 (667)
+ ...+.+ ++|+.+++++||. .+|+++|+|+|||+..+|+.|+.+. ..|..+++.+...
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~ 351 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFK 351 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCC
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHH
Confidence 2 334554 5899999999998 7899999999999999999998763 3688888776432
Q ss_pred -------------------CCcCchHHHHHHHHHHhhh---hcccHHHHHHHHhHcCCCCCcccHHHHHHHHHHHHHHHH
Q 038110 350 -------------------ISTNFKDELKQIFLLIGYT---YVAFIDDLIWYSIGLGLFQGIKNMEEARAGVRTLVNKLK 407 (667)
Q Consensus 350 -------------------~~~~l~~~lk~cfly~s~f---~~i~~~~Li~~Wiaeg~i~~~~~~e~~~~~~~~li~~L~ 407 (667)
+|+.+|++.|.||+|||+| +.|+...++.+|.++ .+++ .+.+.+|.
T Consensus 352 ~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------~~~~----~~~l~~L~ 419 (591)
T 1z6t_A 352 RIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------TEEV----EDILQEFV 419 (591)
T ss_dssp CSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC--------HHHH----HHHHHHHH
T ss_pred HhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC--------HHHH----HHHHHHHH
Confidence 2345688999999999999 679999999999754 2333 34555566
Q ss_pred Hcccccc
Q 038110 408 ASCMLLD 414 (667)
Q Consensus 408 ~~~l~~~ 414 (667)
.+++++.
T Consensus 420 ~~~Ll~~ 426 (591)
T 1z6t_A 420 NKSLLFC 426 (591)
T ss_dssp HTTSSEE
T ss_pred hCcCeEE
Confidence 6899863
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.6e-19 Score=187.54 Aligned_cols=200 Identities=17% Similarity=0.196 Sum_probs=139.1
Q ss_pred cccccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCC-CccCCccccC----
Q 038110 446 ESRVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMN-LLSLPSSIGL---- 519 (667)
Q Consensus 446 ~~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~-i~~lP~si~~---- 519 (667)
...++++++|++.+|.+..+|... .+++|++|++++|.. ..+|..+ +++++|++|+|++|. +..+|..++.
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l--~~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL--RALPASI-ASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC--CCCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc--ccCcHHH-hcCcCCCEEECCCCCCccccChhHhhccch
Confidence 344677888888888777776544 677888888887766 4677765 788888888888764 4467776654
Q ss_pred -----CCcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecC-ccCCCccc
Q 038110 520 -----LTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGH-RWSRGFYR 592 (667)
Q Consensus 520 -----L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~-~~~~~~~~ 592 (667)
+++|++|+|++ .+..+| ..++++++|++|++++|.+..+|..+..+++|+.|++..+. ...++...
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~~lp-------~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIRSLP-------ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp CCEEESTTCCEEEEEEECCCCCC-------GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred hhhccCCCCCEEECcCCCcCcch-------HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHh
Confidence 77888888877 667777 77888888888888888887787777778888888776543 22233333
Q ss_pred ccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCC
Q 038110 593 SSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 593 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
.....++.+.|+.++.....+.....+++|+.|+|++| ...+.+|+++ ..+++|+.+.+..+.
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n--~~~~~iP~~l--~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC--VNLSRLPSLI--AQLPANCIILVPPHL 312 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC--TTCCCCCGGG--GGSCTTCEEECCGGG
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC--CchhhccHHH--hhccCceEEeCCHHH
Confidence 34455677777764444433322345578888888887 6667778887 778888888776543
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=7.9e-18 Score=174.68 Aligned_cols=202 Identities=17% Similarity=0.180 Sum_probs=171.0
Q ss_pred ccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEe
Q 038110 449 VRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLC 527 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~ 527 (667)
...++.|++.+|.+..+|... .+++|++|++++|.. ..+|..+ +++++|++|+|++|.+..+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l--~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL--MELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC--CCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc--cchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 367899999999999988755 799999999999987 5889876 999999999999999999999999999999999
Q ss_pred cCC--cccccCCCCccChhhhc---------CCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCccccccc
Q 038110 528 LYG--GVGVVDGVKNASLEELK---------HFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNK 596 (667)
Q Consensus 528 L~~--~l~~LP~~~~~~~~~l~---------~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 596 (667)
+++ .++.+| ..++ ++++|++|++++|.+..+|..+..+++|+.|++..+....++.......
T Consensus 157 L~~n~~~~~~p-------~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~ 229 (328)
T 4fcg_A 157 IRACPELTELP-------EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229 (328)
T ss_dssp EEEETTCCCCC-------SCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT
T ss_pred CCCCCCccccC-------hhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCC
Confidence 998 677888 5554 4999999999999999999998999999999998776555544344456
Q ss_pred ccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCCeeE
Q 038110 597 SYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGPQFE 664 (667)
Q Consensus 597 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i 664 (667)
.++.+.+++++.....+.....+++|+.|+|++| ...+.+|.++ ..+++|+.|+|++|+.+..+
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n--~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC--SNLLTLPLDI--HRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC--TTCCBCCTTG--GGCTTCCEEECTTCTTCCCC
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC--Cchhhcchhh--hcCCCCCEEeCCCCCchhhc
Confidence 7888888885555544433345689999999999 7778899999 89999999999999876654
No 7
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=1.5e-16 Score=161.88 Aligned_cols=198 Identities=16% Similarity=0.153 Sum_probs=154.6
Q ss_pred ccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L 526 (667)
....+++.+.+.++.+..+|... .++++.|++++|.. ..++...|.++++|++|+|++|.++.+|.. +.+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 34567888888888888887654 37889999998887 456555568999999999999998888765 788899999
Q ss_pred ecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCc-ccccccccceEEe
Q 038110 527 CLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGF-YRSSNKSYRSFRI 603 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~l~~l~l 603 (667)
++++ .+..+| ..+..+++|++|++++|+++.+|.+ +..+++|+.|++..+.-..++. .......++.+.+
T Consensus 83 ~Ls~N~l~~l~-------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 83 DLSHNQLQSLP-------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp ECCSSCCSSCC-------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ECCCCcCCcCc-------hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 9988 788888 7788889999999999998888865 6688889988877554333322 1233456777888
Q ss_pred ecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 604 DLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
+.+.....+......+++|+.|+|++| .+..+|..+ ..+++|+.|++++|+-
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N---~l~~ip~~~--~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQEN---SLYTIPKGF--FGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSS---CCCCCCTTT--TTTCCCSEEECCSCCB
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCC---cCCccChhh--cccccCCeEEeCCCCc
Confidence 777666666555556689999999999 677899988 7788999999999874
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=5.7e-16 Score=156.03 Aligned_cols=174 Identities=21% Similarity=0.287 Sum_probs=101.1
Q ss_pred cceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcccEE
Q 038110 450 RHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHTL 526 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~~L 526 (667)
.+++.|++.+|.+..++. ...+++|++|++++|.. ..+|..+|.++++|++|+|++|.+..+|.. +..+.+|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 456666666666655553 22566666666666655 456655556666666666666666665543 4566666666
Q ss_pred ecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCcccccccccceEEee
Q 038110 527 CLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRID 604 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~ 604 (667)
++++ .+..+|. ..++++++|++|++++|.+..+|.. +..+++|+.|++..+.
T Consensus 115 ~l~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------------- 168 (270)
T 2o6q_A 115 RLDRNQLKSLPP------RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-------------------- 168 (270)
T ss_dssp ECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--------------------
T ss_pred ECCCCccCeeCH------HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc--------------------
Confidence 6666 5555542 3456666666666666666666654 3456666666554332
Q ss_pred cCccccchHHHHHHhhhcceeeccccccccccccchh-hhhccCCCccEEEeecCC
Q 038110 605 LDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNE-LVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 605 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-l~~~~l~~L~~L~l~~~~ 659 (667)
.....+.....+++|+.|+|++| .+..+|.. + ..+++|+.|++++|+
T Consensus 169 ---l~~~~~~~~~~l~~L~~L~L~~N---~l~~~~~~~~--~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 169 ---LKRVPEGAFDKLTELKTLKLDNN---QLKRVPEGAF--DSLEKLKMLQLQENP 216 (270)
T ss_dssp ---CSCCCTTTTTTCTTCCEEECCSS---CCSCCCTTTT--TTCTTCCEEECCSSC
T ss_pred ---CcEeChhHhccCCCcCEEECCCC---cCCcCCHHHh--ccccCCCEEEecCCC
Confidence 22222221223457777777777 44445543 4 566777777777765
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=4.4e-16 Score=158.19 Aligned_cols=201 Identities=17% Similarity=0.162 Sum_probs=159.0
Q ss_pred ccccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCC-CccC-CccccCCCc
Q 038110 447 SRVRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMN-LLSL-PSSIGLLTN 522 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~-i~~l-P~si~~L~~ 522 (667)
..++++++|++.+|.+..++.. ..+++|++|++++|.. ..++...|.++++|++|+|++|. +..+ |..++.+++
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc--ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 3467999999999999888753 3789999999999977 45644445999999999999997 8887 778999999
Q ss_pred ccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCc-ccccccccc
Q 038110 523 LHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGF-YRSSNKSYR 599 (667)
Q Consensus 523 L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~l~ 599 (667)
|++|++++ .+..+|. ..+.++++|++|++++|.+..+|.. +..+++|+.|++..+.-..++. .......++
T Consensus 107 L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGP------GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp CCEEECTTSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCEEECCCCcCCEECH------hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 99999999 7777742 6789999999999999999999876 6789999999887654333322 123345678
Q ss_pred eEEeecCccccchHHHHHHhhhcceeeccccccccccccch-hhhhccCCCccEEEeecCCC
Q 038110 600 SFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVN-ELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 600 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~~~l~~L~~L~l~~~~~ 660 (667)
.+.++++......+.....+++|+.|+|++| .+..+|. .+ ..+++|+.|++++|+-
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~--~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN---NLSALPTEAL--APLRALQYLRLNDNPW 237 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSS---CCSCCCHHHH--TTCTTCCEEECCSSCE
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCC---cCCcCCHHHc--ccCcccCEEeccCCCc
Confidence 8888886665554444445689999999999 5555654 46 8899999999999963
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.66 E-value=1.4e-16 Score=164.05 Aligned_cols=197 Identities=14% Similarity=0.153 Sum_probs=118.3
Q ss_pred cceeEEEEeccCcc---ccCCCC-CCCCccEEEccC-CCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCccccCCCcc
Q 038110 450 RHCTSIVILDVKTY---VLPEVM-ECPQLKLFSMPA-EKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPSSIGLLTNL 523 (667)
Q Consensus 450 ~~lr~L~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~si~~L~~L 523 (667)
.+++.|++.+|.+. .+|... .+++|++|++++ |... ..+|..+ +++++|++|+|++|.+. .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~-~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-GPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-SCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc-ccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 46777777777664 344433 567777777764 5543 4566654 67777777777777766 667777777777
Q ss_pred cEEecCC-ccc-ccCCCCccChhhhcCCCCCCeEEeecCCCC-CCCCCCcCCC-CCCeeEEEecCcc-CCC---------
Q 038110 524 HTLCLYG-GVG-VVDGVKNASLEELKHFPNLTSLELEVNDAN-TLPRGGLFFE-KPERYKILTGHRW-SRG--------- 589 (667)
Q Consensus 524 ~~L~L~~-~l~-~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~-~lP~~~~~l~-~L~~l~~~~~~~~-~~~--------- 589 (667)
++|+|++ .+. .+| ..++++++|++|++++|.+. .+|..+..+. +|+.|++..+... .++
T Consensus 128 ~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~ 200 (313)
T 1ogq_A 128 VTLDFSYNALSGTLP-------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA 200 (313)
T ss_dssp CEEECCSSEEESCCC-------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS
T ss_pred CEEeCCCCccCCcCC-------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCccc
Confidence 7777776 444 566 66666667777777666665 5666655555 6666655533211 111
Q ss_pred --------------cccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEe
Q 038110 590 --------------FYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQI 655 (667)
Q Consensus 590 --------------~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l 655 (667)
........++.+.++.+......+. ...+++|++|+|++| .-.+.+|.++ ..+++|+.|++
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N--~l~~~~p~~l--~~l~~L~~L~L 275 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN--RIYGTLPQGL--TQLKFLHSLNV 275 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS--CCEECCCGGG--GGCTTCCEEEC
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC--cccCcCChHH--hcCcCCCEEEC
Confidence 1112233444555554433322222 223467777777777 3334677777 77888888888
Q ss_pred ecCCC
Q 038110 656 EGYRG 660 (667)
Q Consensus 656 ~~~~~ 660 (667)
++|+-
T Consensus 276 s~N~l 280 (313)
T 1ogq_A 276 SFNNL 280 (313)
T ss_dssp CSSEE
T ss_pred cCCcc
Confidence 88754
No 11
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=6.9e-16 Score=158.54 Aligned_cols=191 Identities=14% Similarity=0.141 Sum_probs=148.2
Q ss_pred ccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L 526 (667)
..+++++.|++.+|.+..++....+++|++|++++|.. ..++. |.++++|++|+|++|.+..+| .++.+.+|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC--CCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 34568889999988888887666889999999998876 56766 489999999999999988876 68889999999
Q ss_pred ecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeec
Q 038110 527 CLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDL 605 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~ 605 (667)
++++ .+..+| . +.++++|++|++++|.+..+|. +..+++|+.|++..+.-..++. ......++.+.++.
T Consensus 113 ~l~~n~l~~~~-------~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 113 DLTSTQITDVT-------P-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD 182 (308)
T ss_dssp ECTTSCCCCCG-------G-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred ECCCCCCCCch-------h-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC
Confidence 9988 777777 3 8889999999999998888876 5788889999887554333333 23345577777777
Q ss_pred CccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 606 DANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 606 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
+....... ...+++|+.|+|++| .+..+++ + ..+++|+.|++++|+-
T Consensus 183 n~l~~~~~--l~~l~~L~~L~L~~N---~l~~~~~-l--~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 183 NKISDISP--LASLPNLIEVHLKNN---QISDVSP-L--ANTSNLFIVTLTNQTI 229 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECTTS---CCCBCGG-G--TTCTTCCEEEEEEEEE
T ss_pred CccCcChh--hcCCCCCCEEEccCC---ccCcccc-c--cCCCCCCEEEccCCee
Confidence 65554443 345579999999999 5555653 6 7899999999998863
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=8.7e-16 Score=161.09 Aligned_cols=202 Identities=18% Similarity=0.133 Sum_probs=154.1
Q ss_pred cccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~ 524 (667)
..++++.|++.+|.+..++. ...+++|++|++++|.. ..++...|.++++|++|+|++|.++.+|.. ++++++|+
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 34689999999999988876 34799999999999977 556555569999999999999999999877 89999999
Q ss_pred EEecCC-cccccCCCCccChh--hhcCCCCCCeEEeecC-CCCCCCC-CCcCCCCCCeeEEEecCccCC-Cccccccccc
Q 038110 525 TLCLYG-GVGVVDGVKNASLE--ELKHFPNLTSLELEVN-DANTLPR-GGLFFEKPERYKILTGHRWSR-GFYRSSNKSY 598 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~--~l~~L~~L~~L~l~~~-~l~~lP~-~~~~l~~L~~l~~~~~~~~~~-~~~~~~~~~l 598 (667)
+|++++ .+..+| . .++++++|++|++++| .+..+|. .+..+++|+.|++..+.-..+ +........+
T Consensus 128 ~L~L~~n~l~~l~-------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 128 FLNLLGNPYKTLG-------ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp EEECTTCCCSSSC-------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred EEECCCCCCcccC-------chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 999999 788888 5 6889999999999998 4777765 467888999998886653222 2222334567
Q ss_pred ceEEeecCccccchHHHHHHhhhcceeecccccccc-----------------------------ccccchhhhhccCCC
Q 038110 599 RSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQD-----------------------------IKNFVNELVKVGSSQ 649 (667)
Q Consensus 599 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-----------------------------~~~~~~~l~~~~l~~ 649 (667)
+.+.++.+.....+......+++|+.|+|++|.-.+ ...+|+++ ..+++
T Consensus 201 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~l~~ 278 (353)
T 2z80_A 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQISG 278 (353)
T ss_dssp EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH--HTCTT
T ss_pred CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH--hcccC
Confidence 777787766656666666667899999998882111 01255666 67888
Q ss_pred ccEEEeecCCC
Q 038110 650 LKYLQIEGYRG 660 (667)
Q Consensus 650 L~~L~l~~~~~ 660 (667)
|+.|++++|.-
T Consensus 279 L~~L~Ls~N~l 289 (353)
T 2z80_A 279 LLELEFSRNQL 289 (353)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECCCCCC
Confidence 88888888753
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=2.6e-16 Score=162.15 Aligned_cols=198 Identities=8% Similarity=0.041 Sum_probs=114.9
Q ss_pred cccceeEEEEeccCcc-ccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCccccCCC-cc
Q 038110 448 RVRHCTSIVILDVKTY-VLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPSSIGLLT-NL 523 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~si~~L~-~L 523 (667)
.++++++|++.+|.+. .+|... .+++|++|++++|... ..+|..+ .++++|++|+|++|.+. .+|..++.+. +|
T Consensus 99 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-GTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-SCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-CcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 3444555555554443 333322 4455555555555443 3444443 55555555555555554 4555555554 55
Q ss_pred cEEecCC-ccc-ccCCCCccChhhhcCCCCCCeEEeecCCCCC-CCCCCcCCCCCCeeEEEecCccCCCcccccccccce
Q 038110 524 HTLCLYG-GVG-VVDGVKNASLEELKHFPNLTSLELEVNDANT-LPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRS 600 (667)
Q Consensus 524 ~~L~L~~-~l~-~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~-lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~ 600 (667)
++|++++ .+. .+| ..++.++ |++|++++|.+.. +|..+..+++|+.|++..+..............++.
T Consensus 177 ~~L~L~~N~l~~~~~-------~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 248 (313)
T 1ogq_A 177 TSMTISRNRLTGKIP-------PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248 (313)
T ss_dssp CEEECCSSEEEEECC-------GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCE
T ss_pred cEEECcCCeeeccCC-------hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCE
Confidence 5555555 333 344 5566665 6666666666543 344466788888887765543222112234466888
Q ss_pred EEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 601 FRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 601 l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
+.++.+......+.....+++|+.|+|++| .-.+.+|. . ..+++|+.|++++|+.
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~ip~-~--~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFN--NLCGEIPQ-G--GNLQRFDVSAYANNKC 303 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEEECCSS--EEEEECCC-S--TTGGGSCGGGTCSSSE
T ss_pred EECcCCcccCcCChHHhcCcCCCEEECcCC--cccccCCC-C--ccccccChHHhcCCCC
Confidence 888886665343333455689999999999 44445665 3 6789999999999974
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.63 E-value=1e-15 Score=166.28 Aligned_cols=204 Identities=15% Similarity=0.127 Sum_probs=110.4
Q ss_pred ccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcccE
Q 038110 449 VRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHT 525 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~~ 525 (667)
+.+++.|++.+|++..++.. ..+++|++|++++|.. ..++...|.++++|++|+|++|.++.+|.. ++.+++|++
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 35666667766666555332 2566666666666655 344444446666666666666666666543 556666666
Q ss_pred EecCC-cccccCCCC--------------cc-----ChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCc
Q 038110 526 LCLYG-GVGVVDGVK--------------NA-----SLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHR 585 (667)
Q Consensus 526 L~L~~-~l~~LP~~~--------------~~-----~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~ 585 (667)
|+|++ .+..+|... +. ....+.++++|++|++++|++..+|. +..+++|+.|++..+..
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcC
Confidence 66666 455554200 00 00234555666666666666555553 34555666665543332
Q ss_pred cCC-CcccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCC
Q 038110 586 WSR-GFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 586 ~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
..+ +........++.+.++++......+.....+++|+.|+|++| .+..+|.... ..+++|+.|+|++|+
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N---~l~~~~~~~~-~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN---NLSSLPHDLF-TPLRYLVELHLHHNP 301 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS---CCSCCCTTSS-TTCTTCCEEECCSSC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC---cCCccChHHh-ccccCCCEEEccCCC
Confidence 211 111222344555666554444443333344567777777777 4444554321 567777788777775
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=9.3e-16 Score=165.96 Aligned_cols=204 Identities=13% Similarity=0.151 Sum_probs=117.5
Q ss_pred ccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccE
Q 038110 449 VRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHT 525 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~ 525 (667)
..+++.|++.+|.+..++.. ..+++|++|++++|.. ..++...|.++++|++|+|++|.++.+|. .+..+.+|++
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 45677777777776655432 2667777777777765 45555555777777777777777776655 4667777777
Q ss_pred EecCC-cccccCCC--------------Ccc-----ChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCc
Q 038110 526 LCLYG-GVGVVDGV--------------KNA-----SLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHR 585 (667)
Q Consensus 526 L~L~~-~l~~LP~~--------------~~~-----~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~ 585 (667)
|+|++ .+..+|.. .+. ....|.++++|++|++++|.+..+|. +..+++|+.|++..+.-
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCcc
Confidence 77766 45555420 000 01235556666666666666666653 35556666665553332
Q ss_pred cCC-CcccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCC
Q 038110 586 WSR-GFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 586 ~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
..+ +........++.+.++.+............+++|+.|+|++| .+..+|.... ..+++|+.|+|++|+
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N---~l~~~~~~~~-~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN---NLTLLPHDLF-TPLHHLERIHLHHNP 290 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS---CCCCCCTTTT-SSCTTCCEEECCSSC
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC---CCCccChhHh-ccccCCCEEEcCCCC
Confidence 211 111223344556666655444443333344567777777777 4444554322 667888888888776
No 16
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=5.8e-16 Score=152.94 Aligned_cols=201 Identities=12% Similarity=0.139 Sum_probs=156.5
Q ss_pred cCCCccccccceeEEEEeccCccccCCC--CCCCCccEEEccCCC-CccccccHHHHhCCCCCcEEEcCC-CCCccCCc-
Q 038110 441 WEWSDESRVRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEK-NSFFAIPHNLFRSMLQVRVLDLTD-MNLLSLPS- 515 (667)
Q Consensus 441 ~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~-~~~~~lp~~~~~~l~~Lr~L~L~~-~~i~~lP~- 515 (667)
..+|. .+.+++.|.+.+|.+..++.. ..+++|++|++++|. . ..+|...|.++++|++|+|++ |.++.+|.
T Consensus 24 ~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 24 QRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL--QQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC--CEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred cccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc--ceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 35555 566899999999999888763 379999999999997 5 678876679999999999998 99998874
Q ss_pred cccCCCcccEEecCC-cccccCCCCccChhhhcCCCCCC---eEEeecC-CCCCCCCC-CcCCCCCC-eeEEEecCccCC
Q 038110 516 SIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLT---SLELEVN-DANTLPRG-GLFFEKPE-RYKILTGHRWSR 588 (667)
Q Consensus 516 si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~---~L~l~~~-~l~~lP~~-~~~l~~L~-~l~~~~~~~~~~ 588 (667)
.++++++|++|++++ .+..+| . ++.+++|+ +|++++| .+..+|.. +..+++|+ .|++..+.-..+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp-------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFP-------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCC-------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred HhCCCCCCCEEeCCCCCCcccc-------c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 689999999999999 888898 5 88888888 9999999 89999986 66888999 998765543333
Q ss_pred CcccccccccceEEeecC-ccccchHHHHHHh-hhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 589 GFYRSSNKSYRSFRIDLD-ANVRLKDRLVVQL-RGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 589 ~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
+........++.+.++.+ .....++.....+ ++|+.|+|++| .+..+|.. .+++|+.|++.++..
T Consensus 172 ~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N---~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT---SVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC---CCCCCCCT----TCTTCSEEECTTC--
T ss_pred CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC---ccccCChh----HhccCceeeccCccC
Confidence 321111245666777766 3555555555566 89999999999 55566654 489999999998865
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=1.3e-15 Score=156.29 Aligned_cols=177 Identities=14% Similarity=0.066 Sum_probs=110.6
Q ss_pred cccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCcc-ccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSF-FAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~-~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~ 524 (667)
.++++++|++.+|.+..+|.. ..+++|++|++++|.... ...|..+ ..+++|++|+|++|.+..+|..+..+++|+
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCC
Confidence 446899999999999888874 378999999999987631 1225555 679999999999999999998899999999
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccC--CCcccccccccce
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWS--RGFYRSSNKSYRS 600 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~--~~~~~~~~~~l~~ 600 (667)
+|++++ .+..+|. ...+.++++|++|++++|.+..++.. +..+++|+.|++..+.... ++........++.
T Consensus 105 ~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 105 HLDFQHSNLKQMSE-----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp EEECTTSEEESSTT-----TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred EEECCCCccccccc-----chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 999988 6666651 02456666666666666665544333 4455666666554332111 1222222333444
Q ss_pred EEeecCccccchHHHHHHhhhcceeecccc
Q 038110 601 FRIDLDANVRLKDRLVVQLRGIEELSLAGL 630 (667)
Q Consensus 601 l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 630 (667)
+.++.+......+.....+++|+.|+|++|
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence 445443333332222223345555555555
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=158.94 Aligned_cols=203 Identities=12% Similarity=0.133 Sum_probs=154.1
Q ss_pred cccccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc--cccCCC
Q 038110 446 ESRVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS--SIGLLT 521 (667)
Q Consensus 446 ~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~--si~~L~ 521 (667)
....++++.|++.+|.+..++. ...+++|++|++++|.. ..+|...|+++++|++|+|++|.++.+|. .+++++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC--CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 4567899999999999987754 33789999999999987 67888877999999999999999999987 789999
Q ss_pred cccEEecCC--cccccCCCCccChhhhcCCCCCCeEEeecCCCCCC-CCCCcCCCCCCeeEEEecCccCCCc-ccccccc
Q 038110 522 NLHTLCLYG--GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTL-PRGGLFFEKPERYKILTGHRWSRGF-YRSSNKS 597 (667)
Q Consensus 522 ~L~~L~L~~--~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~ 597 (667)
+|++|++++ .+..+|. ..++++++|++|++++|.+..+ |..+..+++|+.|++..+....++. .......
T Consensus 150 ~L~~L~l~~n~~~~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 223 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQR------KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223 (353)
T ss_dssp TCCEEEEEESSSCCEECT------TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTT
T ss_pred CCcEEECCCCccccccCH------HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhccc
Confidence 999999998 4777752 6788899999999999988776 5567778888888877554322221 1112344
Q ss_pred cceEEeecCccccc-------------------------------hHHHHHHhhhcceeeccccccccccccchhhhhcc
Q 038110 598 YRSFRIDLDANVRL-------------------------------KDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVG 646 (667)
Q Consensus 598 l~~l~l~~~~~~~~-------------------------------~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~ 646 (667)
++.+.++.+..... .+.....+++|+.|+|++| .+..+|..+. ..
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N---~l~~i~~~~~-~~ 299 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN---QLKSVPDGIF-DR 299 (353)
T ss_dssp EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS---CCCCCCTTTT-TT
T ss_pred ccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC---CCCccCHHHH-hc
Confidence 55555555332221 1122344579999999999 6667887742 78
Q ss_pred CCCccEEEeecCCC
Q 038110 647 SSQLKYLQIEGYRG 660 (667)
Q Consensus 647 l~~L~~L~l~~~~~ 660 (667)
+++|+.|++++|+-
T Consensus 300 l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 300 LTSLQKIWLHTNPW 313 (353)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CCCCCEEEeeCCCc
Confidence 99999999999974
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=1.9e-15 Score=164.14 Aligned_cols=195 Identities=14% Similarity=0.093 Sum_probs=131.6
Q ss_pred eeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCC-ccccCCCcccEEecCC
Q 038110 452 CTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYG 530 (667)
Q Consensus 452 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP-~si~~L~~L~~L~L~~ 530 (667)
.+.+...++.+..+|... .++|++|++++|.. ..++...|.++++|++|+|++|.+..+| ..++++.+|++|+|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456777777888888644 47999999999987 5565555699999999999999999775 6799999999999999
Q ss_pred -cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCc-cCCCc-cccccc----------
Q 038110 531 -GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHR-WSRGF-YRSSNK---------- 596 (667)
Q Consensus 531 -~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~-~~~~~-~~~~~~---------- 596 (667)
.+..+|. ..++++++|++|++++|.+..+|.. +..+++|+.|++..++. ..++. ......
T Consensus 133 n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 133 NWLTVIPS------GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp SCCSBCCT------TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcCCccCh------hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 8888883 4488899999999999988888874 45677777776654221 11110 011122
Q ss_pred ------------ccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCC
Q 038110 597 ------------SYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 597 ------------~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
.++.|.|+++......+.....+++|+.|+|++| .-....+..+ ..+++|+.|+|++|.
T Consensus 207 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~--~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS--QVSLIERNAF--DGLASLVELNLAHNN 277 (452)
T ss_dssp CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS--CCCEECTTTT--TTCTTCCEEECCSSC
T ss_pred cccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC--cCceECHHHh--cCCCCCCEEECCCCc
Confidence 3444444444433333333334456666666666 2222224445 667777777777764
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=162.68 Aligned_cols=122 Identities=16% Similarity=0.244 Sum_probs=100.7
Q ss_pred eeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCC-ccccCCCcccEEecCC
Q 038110 452 CTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYG 530 (667)
Q Consensus 452 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP-~si~~L~~L~~L~L~~ 530 (667)
.+.+...++.+..+|... .++++.|++++|.. ..++...|.++++|++|+|++|.+..++ ..+.++.+|++|+|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456777777888888654 47899999999987 5666666799999999999999999875 6799999999999999
Q ss_pred -cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEe
Q 038110 531 -GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILT 582 (667)
Q Consensus 531 -~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~ 582 (667)
.+..+|. ..|..+++|++|++++|.+..+|.. +..+++|+.|++..
T Consensus 122 n~l~~~~~------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 122 NRLTTIPN------GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp SCCSSCCT------TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CcCCeeCH------hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 8888883 4688899999999999988888774 55777777777654
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=1.3e-15 Score=153.87 Aligned_cols=200 Identities=14% Similarity=0.116 Sum_probs=152.6
Q ss_pred cccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCC-ccccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP-~si~~L~~L~ 524 (667)
.+.++++|++.+|.+..++. ...+++|++|++++|.. ..++...|.++++|++|+|++|.+..+| ..++++.+|+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 34689999999999988775 33789999999999977 5677666699999999999999999775 6799999999
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCC--CCCCCcCCCCCCeeEEEecCccCCCc-ccccccccc-
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANT--LPRGGLFFEKPERYKILTGHRWSRGF-YRSSNKSYR- 599 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~--lP~~~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~l~- 599 (667)
+|++++ .+..+|. ..++++++|++|++++|.+.. +|..+..+++|+.|++..+.-..++. .......++
T Consensus 104 ~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 104 KLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp EEECTTSCCCCSTT------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred EEECCCCCccccCc------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 999999 7777762 368999999999999999887 67778899999999887554332211 111112223
Q ss_pred ---eEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 600 ---SFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 600 ---~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
.+.++.+............ .+|+.|+|++| .+..+|.... ..+++|+.|++++|+-
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n---~l~~~~~~~~-~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTN---QLKSVPDGIF-DRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCS-CCEEEEECCSS---CCSCCCTTTT-TTCCSCCEEECCSSCB
T ss_pred cceeeecCCCcccccCccccCC-CcccEEECCCC---ceeecCHhHh-cccccccEEEccCCcc
Confidence 5666665554444333222 38999999999 5666776532 7899999999998763
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=5.6e-15 Score=149.96 Aligned_cols=196 Identities=12% Similarity=0.040 Sum_probs=155.9
Q ss_pred eEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-CccccCCCcccEEecCC-
Q 038110 453 TSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYG- 530 (667)
Q Consensus 453 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L~~L~L~~- 530 (667)
+.++..++.+..+|... .++|+.|++++|.. ..+|...|.++++|++|+|++|.++.+ |..++.+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777778888887643 67999999999987 567766679999999999999999977 77899999999999999
Q ss_pred c-ccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCc-ccccccccceEEeecCc
Q 038110 531 G-VGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGF-YRSSNKSYRSFRIDLDA 607 (667)
Q Consensus 531 ~-l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~ 607 (667)
. +..++. ..+.++++|++|++++|.+..+|.. +..+++|+.|++..+.-..++. .......++.+.++++.
T Consensus 91 ~~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 91 AQLRSVDP------ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp TTCCCCCT------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCH------HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 4 888842 7899999999999999999888654 6789999999888655333332 12335568888888876
Q ss_pred cccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCC
Q 038110 608 NVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 608 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
....+......+++|+.|+|++| .-....|..+ ..+++|+.|++++|.-.
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~--~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQN--RVAHVHPHAF--RDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS--CCCEECTTTT--TTCTTCCEEECCSSCCS
T ss_pred ccccCHHHhcCccccCEEECCCC--cccccCHhHc--cCcccccEeeCCCCcCC
Confidence 66655544455689999999999 4333347778 88999999999998643
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=3.6e-15 Score=158.61 Aligned_cols=123 Identities=14% Similarity=0.146 Sum_probs=57.2
Q ss_pred cceeEEEEeccCccccCCCC--CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCC-ccccCCCcccEE
Q 038110 450 RHCTSIVILDVKTYVLPEVM--ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTL 526 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP-~si~~L~~L~~L 526 (667)
.+++.+++.++.+..+|... .+++|++|++++|.. ..++...|.++++|++|+|++|.+..+| ..++++++|++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 44555555555554444421 345555555555443 3333333355555555555555555442 234455555555
Q ss_pred ecCC-cccccCCCCccChhh-hcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEE
Q 038110 527 CLYG-GVGVVDGVKNASLEE-LKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKIL 581 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~-l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~ 581 (667)
++++ .+..+| .. ++++++|++|++++|.+..+|+. +..+++|+.|++.
T Consensus 123 ~L~~n~l~~l~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 123 VLERNDLSSLP-------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp ECCSSCCCCCC-------TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred ECCCCccCcCC-------HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 5554 444444 22 24444555555554444444332 3344444444443
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.58 E-value=1.5e-14 Score=153.85 Aligned_cols=203 Identities=16% Similarity=0.216 Sum_probs=119.9
Q ss_pred ccccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-CccccCCCcc
Q 038110 447 SRVRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNL 523 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L 523 (667)
..+++++.|++.+|.+..+++. ..+++|++|++++|.. ..+|..+|.++++|++|+|++|.+..+ |..++.+++|
T Consensus 90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc--CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 3445666666666666555432 2566666666666655 456665556666666666666666655 3346666666
Q ss_pred cEEecCC-cccccC-----C------------------------------------------------CCccChhhhcCC
Q 038110 524 HTLCLYG-GVGVVD-----G------------------------------------------------VKNASLEELKHF 549 (667)
Q Consensus 524 ~~L~L~~-~l~~LP-----~------------------------------------------------~~~~~~~~l~~L 549 (667)
++|++++ .+..+| . .....+..++.+
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l 247 (390)
T 3o6n_A 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 247 (390)
T ss_dssp CEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC
T ss_pred CEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC
Confidence 6666665 222211 0 000012335566
Q ss_pred CCCCeEEeecCCCCCC-CCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeecCccccchHHHHHHhhhcceeecc
Q 038110 550 PNLTSLELEVNDANTL-PRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLA 628 (667)
Q Consensus 550 ~~L~~L~l~~~~l~~l-P~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~ 628 (667)
++|++|++++|.+..+ |..+..+++|+.|++..+.-..++........++.+.++.+.....+..+ ..+++|+.|+|+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~ 326 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLD 326 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc-cccCcCCEEECC
Confidence 7777777777776665 33456677777777665443333222233456777777776555555444 345788888888
Q ss_pred ccccccccccchhhhhccCCCccEEEeecCC
Q 038110 629 GLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 629 ~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
+| .+..++ + ..+++|+.|++++|+
T Consensus 327 ~N---~i~~~~--~--~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 327 HN---SIVTLK--L--STHHTLKNLTLSHND 350 (390)
T ss_dssp SS---CCCCCC--C--CTTCCCSEEECCSSC
T ss_pred CC---ccceeC--c--hhhccCCEEEcCCCC
Confidence 88 444443 4 667888888888875
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=1.1e-14 Score=151.01 Aligned_cols=200 Identities=11% Similarity=0.127 Sum_probs=124.8
Q ss_pred ccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccc-cHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccE
Q 038110 449 VRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAI-PHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHT 525 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~l-p~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~ 525 (667)
.+.++.|++.+|.+..++. ...+++|++|++++|.. ..+ |.. |.++++|++|+|++|.++.+|..+. .+|++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGA-FAPLVKLERLYLSKNQLKELPEKMP--KTLQE 125 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC--CCBCTTT-TTTCTTCCEEECCSSCCSBCCSSCC--TTCCE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC--CeeCHHH-hcCCCCCCEEECCCCcCCccChhhc--ccccE
Confidence 4678888888888877765 23678888888888876 345 444 4888888888888888888777664 56777
Q ss_pred EecCC-cccccCC--------------C------CccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecC
Q 038110 526 LCLYG-GVGVVDG--------------V------KNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGH 584 (667)
Q Consensus 526 L~L~~-~l~~LP~--------------~------~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~ 584 (667)
|++++ .+..+|. + ....+..+.++++|++|++++|.+..+|..+. ++|+.|++..+.
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK 203 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCc
Confidence 77766 4444441 0 00111445555566666666555555555432 556666554333
Q ss_pred ccCC-CcccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 585 RWSR-GFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 585 ~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
-..+ +........++.+.++.+............+++|+.|+|++| .+..+|.++ ..+++|+.|++++|+-
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N---~l~~lp~~l--~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN---KLVKVPGGL--ADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS---CCSSCCTTT--TTCSSCCEEECCSSCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC---cCccCChhh--ccCCCcCEEECCCCcC
Confidence 1111 111223345666777665554444333344578888888888 566788888 7888888888888864
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=1.1e-14 Score=163.65 Aligned_cols=203 Identities=16% Similarity=0.221 Sum_probs=128.2
Q ss_pred ccccceeEEEEeccCccccCCCC--CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCC-ccccCCCcc
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVM--ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLP-SSIGLLTNL 523 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP-~si~~L~~L 523 (667)
..+++++.|++.+|.+..+++.. .+++|++|++++|.. ..+|..+|+++++|++|+|++|.+..+| ..++++++|
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC--CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 34556667777766666555432 566777777776665 4666665667777777777777666553 356677777
Q ss_pred cEEecCC-cccccC-----C------------------------------------------------CCccChhhhcCC
Q 038110 524 HTLCLYG-GVGVVD-----G------------------------------------------------VKNASLEELKHF 549 (667)
Q Consensus 524 ~~L~L~~-~l~~LP-----~------------------------------------------------~~~~~~~~l~~L 549 (667)
++|+|++ .+..+| . .....+..++.+
T Consensus 174 ~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l 253 (597)
T 3oja_B 174 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 253 (597)
T ss_dssp CEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC
T ss_pred cEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccC
Confidence 7777765 222222 0 000112446677
Q ss_pred CCCCeEEeecCCCCCC-CCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeecCccccchHHHHHHhhhcceeecc
Q 038110 550 PNLTSLELEVNDANTL-PRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLA 628 (667)
Q Consensus 550 ~~L~~L~l~~~~l~~l-P~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~ 628 (667)
++|++|++++|.+..+ |..+..+++|+.|++..+....++........++.|.|+.+.....+..+ ..+++|+.|+|+
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~ 332 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLD 332 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECC
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEECC
Confidence 7888888888877666 44466778888887765443333333333556777888776666555555 455888888888
Q ss_pred ccccccccccchhhhhccCCCccEEEeecCC
Q 038110 629 GLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 629 ~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
+| .+..++ + ..+++|+.|+|++|+
T Consensus 333 ~N---~l~~~~--~--~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 333 HN---SIVTLK--L--STHHTLKNLTLSHND 356 (597)
T ss_dssp SS---CCCCCC--C--CTTCCCSEEECCSSC
T ss_pred CC---CCCCcC--h--hhcCCCCEEEeeCCC
Confidence 88 444443 4 668889999998886
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=1e-14 Score=151.45 Aligned_cols=197 Identities=12% Similarity=0.077 Sum_probs=126.7
Q ss_pred ccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEE
Q 038110 449 VRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L 526 (667)
.++++.|++.+|.+..++. ...+++|++|++++|.. ..+++..|+++++|++|+|++|.++.+|..+. .+|++|
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL 128 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc--CccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence 4678889999888877754 33788899999988876 45544445888999999999988888888776 788888
Q ss_pred ecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCC---CCCCCcCC--------------------CCCCeeEEEe
Q 038110 527 CLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANT---LPRGGLFF--------------------EKPERYKILT 582 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~---lP~~~~~l--------------------~~L~~l~~~~ 582 (667)
++++ .+..+|. ..++++++|++|++++|.+.. .|..+..+ ++|+.|++..
T Consensus 129 ~l~~n~i~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~ 202 (332)
T 2ft3_A 129 RIHDNRIRKVPK------GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH 202 (332)
T ss_dssp ECCSSCCCCCCS------GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS
T ss_pred ECCCCccCccCH------hHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC
Confidence 8888 6777762 346777777777777776642 23333333 2333333332
Q ss_pred cCccCCC-cccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 583 GHRWSRG-FYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 583 ~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
+....+. ........++.+.++.+......+.....+++|+.|+|++| .+..+|.++ ..+++|+.|++++|+-
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N---~l~~lp~~l--~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN---KLSRVPAGL--PDLKLLQVVYLHTNNI 276 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS---CCCBCCTTG--GGCTTCCEEECCSSCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC---cCeecChhh--hcCccCCEEECCCCCC
Confidence 2211111 11112234555556655444443333344567888888777 555677777 7788888888887754
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.57 E-value=3.2e-14 Score=148.62 Aligned_cols=196 Identities=12% Similarity=0.122 Sum_probs=117.3
Q ss_pred CCCccccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCC
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLT 521 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~ 521 (667)
.++....+++++.|++.+|.+..++....+++|++|++++|.. ..+|. |.++++|++|++++|.+..+|. ++.++
T Consensus 58 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~ 132 (347)
T 4fmz_A 58 SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISA--LQNLTNLRELYLNEDNISDISP-LANLT 132 (347)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCT
T ss_pred cchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc--cCchH--HcCCCcCCEEECcCCcccCchh-hccCC
Confidence 3444566778888888888887777666788888888888866 45553 4888888888888888887776 77888
Q ss_pred cccEEecCC--cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcc--------
Q 038110 522 NLHTLCLYG--GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFY-------- 591 (667)
Q Consensus 522 ~L~~L~L~~--~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~-------- 591 (667)
+|++|++++ .+..+| .+..+++|++|++++|.+..+|. +..+++|+.|++..+.-..++.+
T Consensus 133 ~L~~L~l~~n~~~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 203 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDLS--------PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHY 203 (347)
T ss_dssp TCCEEECTTCTTCCCCG--------GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCE
T ss_pred ceeEEECCCCCCccccc--------chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccce
Confidence 888888877 233333 35555555555555555444443 33444455444432221111110
Q ss_pred -------------cccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecC
Q 038110 592 -------------RSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGY 658 (667)
Q Consensus 592 -------------~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~ 658 (667)
......++.+.++++....... ...+++|+.|++++| .+..+ +.+ ..+++|+.|++++|
T Consensus 204 L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n---~l~~~-~~~--~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 204 FTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN---QISDI-NAV--KDLTKLKMLNVGSN 275 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS---CCCCC-GGG--TTCTTCCEEECCSS
T ss_pred eecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC---ccCCC-hhH--hcCCCcCEEEccCC
Confidence 1222345555555544433332 233456666666666 33333 344 66777777777776
Q ss_pred C
Q 038110 659 R 659 (667)
Q Consensus 659 ~ 659 (667)
.
T Consensus 276 ~ 276 (347)
T 4fmz_A 276 Q 276 (347)
T ss_dssp C
T ss_pred c
Confidence 4
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=7.5e-15 Score=165.12 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=68.8
Q ss_pred cccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~ 524 (667)
.+++++.|++.+|.+..++. ...+++|++|++++|.. ..+|+..|+++++|++|+|++|.+..+|.. ++++++|+
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 34566666666666655543 22566677777766665 445555556677777777777766666655 36666777
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCC
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLP 566 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP 566 (667)
+|+|++ .+..+|. ..|+++++|++|++++|.+..+|
T Consensus 151 ~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 151 TLSMSNNNLERIED------DTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp EEECCSSCCCBCCT------TTTTTCTTCCEEECTTSCCSBCC
T ss_pred EEEeeCCcCCCCCh------hhhhcCCcCcEEECcCCCCCCcC
Confidence 777766 5555441 35666666666666666665554
No 30
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.56 E-value=2.3e-14 Score=122.63 Aligned_cols=80 Identities=13% Similarity=0.046 Sum_probs=71.1
Q ss_pred cccchhhHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 038110 4 CLAPPTERQFS-YLRSYNNNIENLKAEVGKLKDGTESIQHAVDEAKRKG-EEIEKKVEKLLDSGNNAIVEAEKFVGDEAA 81 (667)
Q Consensus 4 ~~~~~v~~~~~-~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~-~~~~~~~~~Wl~~l~~~ayd~ed~ld~~~~ 81 (667)
+++++++.+++ ++.+++.++.|+++++++|+++|++|+++|.+|+.+. ...++.++.|+++||++|||+||+||+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888875 6678899999999999999999999999999999873 246899999999999999999999999987
Q ss_pred hh
Q 038110 82 AN 83 (667)
Q Consensus 82 ~~ 83 (667)
..
T Consensus 81 ~~ 82 (115)
T 3qfl_A 81 QV 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.56 E-value=2.1e-15 Score=154.80 Aligned_cols=201 Identities=14% Similarity=0.062 Sum_probs=152.3
Q ss_pred ccccceeEEEEeccCccccC----CCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc--cccCC
Q 038110 447 SRVRHCTSIVILDVKTYVLP----EVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS--SIGLL 520 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~----~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~--si~~L 520 (667)
...++++.|++.+|.+..+. ....+++|++|++++|.. ..+|..+ .++++|++|++++|.+..+|. .++.+
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i--~~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l 125 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSL 125 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE--EEEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTC
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc--ccChhhc-CCCCCCCEEECCCCcccccccchhhhhc
Confidence 56788999999999886542 223689999999999987 5677775 899999999999999998864 78999
Q ss_pred CcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCC--CCCCCcCCCCCCeeEEEecCccCC-Cccccccc
Q 038110 521 TNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANT--LPRGGLFFEKPERYKILTGHRWSR-GFYRSSNK 596 (667)
Q Consensus 521 ~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~--lP~~~~~l~~L~~l~~~~~~~~~~-~~~~~~~~ 596 (667)
++|++|++++ .+...+. ..+.++++|++|++++|.+.. +|..+..+++|+.|++..+.-..+ +.......
T Consensus 126 ~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFN------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp TTCCEEECTTSCCEECST------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cCCCEEECCCCcCCccch------hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 9999999998 5555431 668889999999999998765 787788899999998875542222 22223345
Q ss_pred ccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccC-CCccEEEeecCCC
Q 038110 597 SYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGS-SQLKYLQIEGYRG 660 (667)
Q Consensus 597 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l-~~L~~L~l~~~~~ 660 (667)
.++.+.++++............+++|+.|+|++| .-....|..+ ..+ ++|+.|++++|+-
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~--~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN--HIMTSKKQEL--QHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS--CCCBCSSSSC--CCCCTTCCEEECTTCCE
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCC--CCcccCHHHH--HhhhccCCEEEccCCCe
Confidence 6778888876655544433345689999999999 4444456667 666 4999999999863
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=158.26 Aligned_cols=199 Identities=15% Similarity=0.099 Sum_probs=115.9
Q ss_pred cccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~ 524 (667)
.+.+++.|++.+|.+..++. ...+++|++|++++|.. ..+++..|.++++|++|+|++|.++.+|.. ++++++|+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 34577788888877766643 23677788888877766 344333347777888888888777777654 57777788
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCC-CCcCCCCCCeeEEEecCccCCCc-cccc-------
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPR-GGLFFEKPERYKILTGHRWSRGF-YRSS------- 594 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~l~~~~~~~~~~~~-~~~~------- 594 (667)
+|+|++ .+..++. ..+.++++|++|++++|.+..++. .+..+++|+.|++..+.-..++. ....
T Consensus 108 ~L~Ls~n~i~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 108 KLDISENKIVILLD------YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp EEECTTSCCCEECT------TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred EEECCCCccccCCh------hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 887777 5554431 455666666666666666555443 34455566666555433222211 1111
Q ss_pred -----------------ccccceEEeecCcccc-chHHHHHHhhhcceeeccccccccccccch-hhhhccCCCccEEEe
Q 038110 595 -----------------NKSYRSFRIDLDANVR-LKDRLVVQLRGIEELSLAGLLDQDIKNFVN-ELVKVGSSQLKYLQI 655 (667)
Q Consensus 595 -----------------~~~l~~l~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~~~l~~L~~L~l 655 (667)
...++.+.++.+.... .+..... ..+|+.|+|++| .+..+|. .+ ..+++|+.|+|
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n---~l~~~~~~~~--~~l~~L~~L~L 255 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHC---NLTAVPYLAV--RHLVYLRFLNL 255 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESS---CCCSCCHHHH--TTCTTCCEEEC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCC---cccccCHHHh--cCccccCeeEC
Confidence 2234444444422111 1111111 126667777666 4555663 45 77889999999
Q ss_pred ecCCC
Q 038110 656 EGYRG 660 (667)
Q Consensus 656 ~~~~~ 660 (667)
++|..
T Consensus 256 s~n~l 260 (477)
T 2id5_A 256 SYNPI 260 (477)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 88864
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.56 E-value=3.3e-14 Score=154.39 Aligned_cols=134 Identities=18% Similarity=0.197 Sum_probs=107.8
Q ss_pred cCCCccccccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-Cccc
Q 038110 441 WEWSDESRVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSI 517 (667)
Q Consensus 441 ~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si 517 (667)
..+|. .++++++|++++|.+..++. ...+++|++|++++|... ..++...|.++++|++|+|++|.+..+ |..+
T Consensus 23 ~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 23 HQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp SSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred ccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-ceECcccccccccCCEEeCCCCccCccChhhc
Confidence 34554 45789999999999977643 238999999999999875 577766679999999999999999866 7889
Q ss_pred cCCCcccEEecCC-cccc-cCCCCccChhh--hcCCCCCCeEEeecCCCCCCC-CC-CcCCCCCCeeEEEecC
Q 038110 518 GLLTNLHTLCLYG-GVGV-VDGVKNASLEE--LKHFPNLTSLELEVNDANTLP-RG-GLFFEKPERYKILTGH 584 (667)
Q Consensus 518 ~~L~~L~~L~L~~-~l~~-LP~~~~~~~~~--l~~L~~L~~L~l~~~~l~~lP-~~-~~~l~~L~~l~~~~~~ 584 (667)
+++++|++|+|++ .+.. +| .. ++++++|++|++++|.+..++ .. +..+++|+.|++..+.
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVL-------SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHH-------HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred cCcccCCEEeCCCCCCCcccc-------CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 9999999999998 5554 34 44 888999999999999888774 44 5688899998876544
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=7.2e-15 Score=169.97 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=45.3
Q ss_pred CCcEEEcCCCCCccCCc--cccCCCcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCC-
Q 038110 499 QVRVLDLTDMNLLSLPS--SIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEK- 574 (667)
Q Consensus 499 ~Lr~L~L~~~~i~~lP~--si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~- 574 (667)
+|++|+|++|.+..+|. +++++++|++|+|++ .+..+| .++++++|++|++++|.+..+|..+..+++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--------~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~ 620 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--------AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--------CCCTTSEESEEECCSSCCSCCCTTSCEECTT
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--------hhcCCCcceEEECcCCccccchHHHhhcccc
Confidence 45555555555555555 455555555555554 344444 456666666666666666666666666666
Q ss_pred CCeeEEEecC
Q 038110 575 PERYKILTGH 584 (667)
Q Consensus 575 L~~l~~~~~~ 584 (667)
|+.|.+..+.
T Consensus 621 L~~L~Ls~N~ 630 (876)
T 4ecn_A 621 VEGLGFSHNK 630 (876)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECcCCC
Confidence 7777666544
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.55 E-value=5.7e-14 Score=146.76 Aligned_cols=196 Identities=12% Similarity=0.089 Sum_probs=148.5
Q ss_pred CccccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcc
Q 038110 444 SDESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNL 523 (667)
Q Consensus 444 ~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L 523 (667)
+....+++++.|.+.+|.+..++....+++|+.|++++|.. ..++. +..+++|++|++++|.+..++. ++.+++|
T Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L 223 (347)
T 4fmz_A 149 SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQI--EDISP--LASLTSLHYFTAYVNQITDITP-VANMTRL 223 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTC
T ss_pred cchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcc--ccccc--ccCCCccceeecccCCCCCCch-hhcCCcC
Confidence 33456678888888888877776656788888888888876 55665 4888888888888888887766 7888889
Q ss_pred cEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEE
Q 038110 524 HTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFR 602 (667)
Q Consensus 524 ~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~ 602 (667)
++|++++ .+..+| . +..+++|++|++++|.+..+| .+..+++|+.|++..+.-..++. ......++.+.
T Consensus 224 ~~L~l~~n~l~~~~-------~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 293 (347)
T 4fmz_A 224 NSLKIGNNKITDLS-------P-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLF 293 (347)
T ss_dssp CEEECCSSCCCCCG-------G-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE
T ss_pred CEEEccCCccCCCc-------c-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCChh-hcCCCCCCEEE
Confidence 9999988 777777 4 888999999999999888875 35778899999887655333332 23345677888
Q ss_pred eecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 603 IDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 603 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
++++............+++|+.|+|++| .+..+++ + ..+++|++|++++|+-
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n---~l~~~~~-~--~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQN---HITDIRP-L--ASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSS---SCCCCGG-G--GGCTTCSEESSSCC--
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCC---ccccccC-h--hhhhccceeehhhhcc
Confidence 8887665555555566789999999999 4555555 6 7899999999999874
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=2.1e-14 Score=144.72 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=102.9
Q ss_pred ccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcccE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHT 525 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~~ 525 (667)
..+++++.|.+.+|.+..++....+++|++|++++|.. ..++ . +.++++|++|+|++|.++.+|.. ++++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l--~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--HDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC--CCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCC--CCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 45678889999988888877766889999999998876 4454 3 48899999999999998887665 688999999
Q ss_pred EecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecC
Q 038110 526 LCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGH 584 (667)
Q Consensus 526 L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~ 584 (667)
|++++ .+..+|. ..++++++|++|++++|.+..+|.. +..+++|+.|++..+.
T Consensus 114 L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 114 LVLVENQLQSLPD------GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp EECTTSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCH------HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence 99988 7777772 4478899999999999998888876 4578888888777443
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.55 E-value=2.2e-14 Score=148.91 Aligned_cols=198 Identities=12% Similarity=0.103 Sum_probs=142.1
Q ss_pred cccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc---cCCccccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL---SLPSSIGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~---~lP~si~~L~~L~ 524 (667)
.++++++|++.+|.+..+|... .++|++|++++|.. ..++...|.++++|++|++++|.+. ..|..++++++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPEKM-PKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCSSC-CTTCCEEECCSSCC--CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCCCEEECCCCcCCccChhh-cccccEEECCCCcc--cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 4456666666666665555433 25677777766665 5667776799999999999999886 3577888999999
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCC-CCcCCCCCCeeEEEecCccCCCc-ccccccccceE
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPR-GGLFFEKPERYKILTGHRWSRGF-YRSSNKSYRSF 601 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~l~~l 601 (667)
+|++++ .+..+| ..+. ++|++|++++|.+..++. .+..+++|+.|++..+.-..+.. .......++.+
T Consensus 175 ~L~l~~n~l~~l~-------~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 175 YIRIADTNITTIP-------QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp EEECCSSCCCSCC-------SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred EEECCCCccccCC-------cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 999998 788888 4443 899999999999988854 57789999999887655332221 22334567888
Q ss_pred EeecCccccchHHHHHHhhhcceeeccccccccccccchhhhh-----ccCCCccEEEeecCCCC
Q 038110 602 RIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVK-----VGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 602 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~-----~~l~~L~~L~l~~~~~l 661 (667)
.++.+.....+..+ ..+++|+.|+|++| .+..++..... ...++|+.|++++|+..
T Consensus 246 ~L~~N~l~~lp~~l-~~l~~L~~L~l~~N---~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 246 HLNNNKLVKVPGGL-ADHKYIQVVYLHNN---NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp ECCSSCCSSCCTTT-TTCSSCCEEECCSS---CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ECCCCcCccCChhh-ccCCCcCEEECCCC---cCCccChhhcCCcccccccccccceEeecCccc
Confidence 88887666555544 34589999999999 55555543210 13588999999999863
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=2.8e-15 Score=169.70 Aligned_cols=202 Identities=12% Similarity=0.104 Sum_probs=107.0
Q ss_pred ccccceeEEEEeccCccc------------------cCCCC---CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEc
Q 038110 447 SRVRHCTSIVILDVKTYV------------------LPEVM---ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDL 505 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~------------------l~~~~---~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L 505 (667)
..+++++.|++.+|.+.. +|... .+++|++|++++|... ..+|..+ +++++|++|+|
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-~~~p~~l-~~l~~L~~L~L 280 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-TKLPTFL-KALPEMQLINV 280 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC-SSCCTTT-TTCSSCCEEEC
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC-ccChHHH-hcCCCCCEEEC
Confidence 344566666666666554 55443 2566666666666544 5555554 56666666666
Q ss_pred CCCC-Cc--cCCccccCC------CcccEEecCC-cccccCCCCccChh--hhcCCCCCCeEEeecCCCC-CC-------
Q 038110 506 TDMN-LL--SLPSSIGLL------TNLHTLCLYG-GVGVVDGVKNASLE--ELKHFPNLTSLELEVNDAN-TL------- 565 (667)
Q Consensus 506 ~~~~-i~--~lP~si~~L------~~L~~L~L~~-~l~~LP~~~~~~~~--~l~~L~~L~~L~l~~~~l~-~l------- 565 (667)
++|. ++ .+|..+++| ++|++|++++ .+..+| . .++++++|++|++++|.+. .+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip-------~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~ 353 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP-------VETSLQKMKKLGMLECLYNQLEGKLPAFGSEI 353 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC-------CHHHHTTCTTCCEEECCSCCCEEECCCCEEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC-------chhhhccCCCCCEEeCcCCcCccchhhhCCCC
Confidence 6665 55 356655554 5666666665 455555 4 4555555555555555544 44
Q ss_pred ---------------CCCCcCCCC-CCeeEEEecCccCCCccccccc--ccceEEeecCccccchHHHHH-------Hhh
Q 038110 566 ---------------PRGGLFFEK-PERYKILTGHRWSRGFYRSSNK--SYRSFRIDLDANVRLKDRLVV-------QLR 620 (667)
Q Consensus 566 ---------------P~~~~~l~~-L~~l~~~~~~~~~~~~~~~~~~--~l~~l~l~~~~~~~~~~~~~~-------~l~ 620 (667)
|..+..+++ |+.|++..+....++....... .++.+.++.+......+.... .++
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 444444555 5555554333222322111111 344445554333222111111 224
Q ss_pred hcceeeccccccccccccchhhhhccCCCccEEEeecCCCC
Q 038110 621 GIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 621 ~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
+|+.|+|++| .+..+|..+. ..+++|+.|++++|.-.
T Consensus 434 ~L~~L~Ls~N---~l~~lp~~~~-~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 434 NVSSINLSNN---QISKFPKELF-STGSPLSSINLMGNMLT 470 (636)
T ss_dssp CEEEEECCSS---CCCSCCTHHH-HTTCCCSEEECCSSCCS
T ss_pred CCCEEECcCC---ccCcCCHHHH-ccCCCCCEEECCCCCCC
Confidence 6777777777 4445666652 45788888888887643
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.55 E-value=2e-14 Score=166.56 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=57.8
Q ss_pred ccceeEEEEeccCcc-ccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCccccCCCcccE
Q 038110 449 VRHCTSIVILDVKTY-VLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHT 525 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~si~~L~~L~~ 525 (667)
+++++.|.+.+|.+. .+|... .+++|++|++++|... ..+|..+ .++++|++|+|++|.+. .+|..++.+++|++
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc-CcCCHHH-hcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 345555555555443 233222 4555666666555553 4455543 56666666666666555 45666666666666
Q ss_pred EecCC-cc-cccCCCCccChhhhcCCCCCCeEEeecCCC
Q 038110 526 LCLYG-GV-GVVDGVKNASLEELKHFPNLTSLELEVNDA 562 (667)
Q Consensus 526 L~L~~-~l-~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l 562 (667)
|+|++ .+ +.+| ..++++++|+.|++++|.+
T Consensus 519 L~L~~N~l~~~~p-------~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 519 LKLSNNSFSGNIP-------AELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCEEECC-------GGGGGCTTCCEEECCSSEE
T ss_pred EECCCCcccCcCC-------HHHcCCCCCCEEECCCCcc
Confidence 66665 33 2455 5666666666666666653
No 40
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=2.8e-14 Score=141.97 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=73.9
Q ss_pred eeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccEEecCC
Q 038110 452 CTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYG 530 (667)
Q Consensus 452 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~ 530 (667)
.+.+++.++.+..+|.... ++++.|++++|.. ..++...|.++++|++|+|++|.+..+|. .+..+.+|++|+|++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccccCCCCC-CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 3456666666666665432 5666666666665 34444444666667777776666665533 356666667776666
Q ss_pred -cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEec
Q 038110 531 -GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTG 583 (667)
Q Consensus 531 -~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~ 583 (667)
.+..+|. ..+..+++|++|++++|.+..+|.. +..+++|+.|++..+
T Consensus 93 n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 93 NQLASLPL------GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp SCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccccCh------hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 5555552 3456666667777766666666665 345666666655533
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.54 E-value=4.9e-14 Score=154.09 Aligned_cols=175 Identities=15% Similarity=0.078 Sum_probs=89.5
Q ss_pred cccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-CccccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L~ 524 (667)
.+++++.|.+.+|.+..+++ ...+++|++|++++|.. ..+|...|.++++|++|+|++|.+..+ |..++++++|+
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC--CccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 34455555555555544422 12455555555555544 344444445555555555555555533 33455555555
Q ss_pred EEecCC-------------------------cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCee
Q 038110 525 TLCLYG-------------------------GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERY 578 (667)
Q Consensus 525 ~L~L~~-------------------------~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l 578 (667)
+|++++ .+..+|. ..+.++++|+.|++++|.+..+|.. +..+++|+.|
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH------HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh------hHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 555544 3333331 3456666666666666666655543 4566667777
Q ss_pred EEEecCcc-CCCcccccccccceEEeecCccccchHHHHHHhhhcceeecccc
Q 038110 579 KILTGHRW-SRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGL 630 (667)
Q Consensus 579 ~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 630 (667)
++..+... .++........++.+.++.+.....+......+++|+.|+|++|
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred eCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 66543211 11111111124666666665555554444445567777777766
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=1.9e-14 Score=166.46 Aligned_cols=149 Identities=14% Similarity=0.139 Sum_probs=111.0
Q ss_pred CCCccEEEccCCCCccccccH--HHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccChhhhc
Q 038110 471 CPQLKLFSMPAEKNSFFAIPH--NLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELK 547 (667)
Q Consensus 471 ~~~Lr~L~l~~~~~~~~~lp~--~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~ 547 (667)
+++|+.|++++|.. ..+|. .+ +++++|++|+|++|.+..+| .++++++|++|+|++ .+..+| ..+.
T Consensus 547 l~~L~~L~Ls~N~L--~~ip~~~~l-~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp-------~~l~ 615 (876)
T 4ecn_A 547 GPKIQIFYMGYNNL--EEFPASASL-QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIP-------EDFC 615 (876)
T ss_dssp TTTCCEEECCSSCC--CBCCCHHHH-TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCC-------TTSC
T ss_pred cCCccEEEeeCCcC--CccCChhhh-hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccch-------HHHh
Confidence 34667777766665 47887 55 99999999999999999999 999999999999999 788999 8899
Q ss_pred CCCC-CCeEEeecCCCCCCCCCCcCCC--CCCeeEEEecCcc-CCCcccc-----cccccceEEeecCccccchHHHHHH
Q 038110 548 HFPN-LTSLELEVNDANTLPRGGLFFE--KPERYKILTGHRW-SRGFYRS-----SNKSYRSFRIDLDANVRLKDRLVVQ 618 (667)
Q Consensus 548 ~L~~-L~~L~l~~~~l~~lP~~~~~l~--~L~~l~~~~~~~~-~~~~~~~-----~~~~l~~l~l~~~~~~~~~~~~~~~ 618 (667)
++++ |++|++++|.+..+|..+..+. +|+.|++..+... .++.++. ....++.+.++.+.....+......
T Consensus 616 ~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~ 695 (876)
T 4ecn_A 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695 (876)
T ss_dssp EECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHT
T ss_pred hccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHcc
Confidence 9999 9999999999999998766554 4888887755422 1222221 1124556666665555555555555
Q ss_pred hhhcceeecccc
Q 038110 619 LRGIEELSLAGL 630 (667)
Q Consensus 619 l~~L~~L~L~~~ 630 (667)
+++|+.|+|++|
T Consensus 696 l~~L~~L~Ls~N 707 (876)
T 4ecn_A 696 GSPISTIILSNN 707 (876)
T ss_dssp TCCCSEEECCSC
T ss_pred CCCCCEEECCCC
Confidence 567777777666
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=4e-14 Score=142.48 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=123.4
Q ss_pred cccccceeEEEEeccCccccCCCC--CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCc
Q 038110 446 ESRVRHCTSIVILDVKTYVLPEVM--ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTN 522 (667)
Q Consensus 446 ~~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~ 522 (667)
...+++++.|++.+|.+..++... .+++|++|++++|.. ..+|...|.++++|++|+|++|.++.+|. .++.+++
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 134 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC--CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC--CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence 456789999999999998888754 689999999999987 67888778999999999999999998865 5789999
Q ss_pred ccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCc-ccccccccc
Q 038110 523 LHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGF-YRSSNKSYR 599 (667)
Q Consensus 523 L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~l~ 599 (667)
|++|+|++ .+..+|. ..++++++|++|++++|.+..+|.. +..+++|+.|++..+.-..++. .......++
T Consensus 135 L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 135 LTYLSLGYNELQSLPK------GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp CCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCEEECCCCcCCccCH------hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 99999999 8888882 3489999999999999999999886 5689999999887554333322 122234455
Q ss_pred eEEeecC
Q 038110 600 SFRIDLD 606 (667)
Q Consensus 600 ~l~l~~~ 606 (667)
.+.+.++
T Consensus 209 ~L~l~~N 215 (270)
T 2o6q_A 209 MLQLQEN 215 (270)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 5666553
No 44
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=2.5e-14 Score=145.51 Aligned_cols=168 Identities=18% Similarity=0.199 Sum_probs=125.4
Q ss_pred ccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L 526 (667)
..+++++.|++.+|.+..++....+++|++|++++|.. ..++. +.++++|++|+|++|.++.+|. ++.+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 45678999999999988887766889999999999987 56666 5999999999999999988765 8999999999
Q ss_pred ecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeec
Q 038110 527 CLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDL 605 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~ 605 (667)
++++ .+..+| .+..+++|++|++++|.+..++ .+..+++|+.|++..+.-..+..
T Consensus 118 ~L~~n~i~~~~--------~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~~--------------- 173 (291)
T 1h6t_A 118 SLEHNGISDIN--------GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--------------- 173 (291)
T ss_dssp ECTTSCCCCCG--------GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG---------------
T ss_pred ECCCCcCCCCh--------hhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEccCCccccchh---------------
Confidence 9998 777765 5888999999999999988884 45788889998776443222211
Q ss_pred CccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCC
Q 038110 606 DANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 606 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
...+++|+.|+|++| .+..++ .+ ..+++|+.|++++|+
T Consensus 174 ----------l~~l~~L~~L~L~~N---~i~~l~-~l--~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 ----------LAGLTKLQNLYLSKN---HISDLR-AL--AGLKNLDVLELFSQE 211 (291)
T ss_dssp ----------GTTCTTCCEEECCSS---CCCBCG-GG--TTCTTCSEEEEEEEE
T ss_pred ----------hcCCCccCEEECCCC---cCCCCh-hh--ccCCCCCEEECcCCc
Confidence 112356666666666 333343 24 556666666666653
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=8.6e-14 Score=140.46 Aligned_cols=190 Identities=14% Similarity=0.116 Sum_probs=147.0
Q ss_pred EeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccEEecCC-cccc
Q 038110 457 ILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYG-GVGV 534 (667)
Q Consensus 457 l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~-~l~~ 534 (667)
..+.++..+|... .++|++|++++|.. ..++...|.++++|++|+|++|.+..+|. .++++++|++|+|++ .+..
T Consensus 14 c~~~~l~~ip~~l-~~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 14 CMELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp CTTSCCSSCCSSS-CTTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ecCCCccccCCCC-CCCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3344566676643 36899999999987 56776556999999999999999998765 799999999999999 7777
Q ss_pred cCCCCccChhhhcCCCCCCeEEeecCCCCCCCC-CCcCCCCCCeeEEEecCccC--CCcccccccccceEEeecCccccc
Q 038110 535 VDGVKNASLEELKHFPNLTSLELEVNDANTLPR-GGLFFEKPERYKILTGHRWS--RGFYRSSNKSYRSFRIDLDANVRL 611 (667)
Q Consensus 535 LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~l~~~~~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~ 611 (667)
+|. ..+.++++|++|++++|.+..++. .+..+++|+.|++..+.-.. ++........++.+.++.+.....
T Consensus 91 ~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 91 LAL------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp ECT------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cCh------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 762 578999999999999999998887 47789999999988665333 344344456788888888766555
Q ss_pred hHHHHHHhhhcc----eeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 612 KDRLVVQLRGIE----ELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 612 ~~~~~~~l~~L~----~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
.......+++|+ .|++++| .+..++... ....+|+.|++++|.-
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n---~l~~~~~~~--~~~~~L~~L~L~~n~l 212 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLN---PMNFIQPGA--FKEIRLKELALDTNQL 212 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSS---CCCEECTTS--SCSCCEEEEECCSSCC
T ss_pred CHHHhhhhhhccccceeeecCCC---cccccCccc--cCCCcccEEECCCCce
Confidence 444334456676 8899998 666677666 4566999999999864
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=9e-15 Score=150.53 Aligned_cols=195 Identities=13% Similarity=0.101 Sum_probs=149.3
Q ss_pred cccceeEEEEeccCcc-ccCCC---CCCCCccEEEccCCCCccccccHHHHhCC-----CCCcEEEcCCCCCccCC-ccc
Q 038110 448 RVRHCTSIVILDVKTY-VLPEV---MECPQLKLFSMPAEKNSFFAIPHNLFRSM-----LQVRVLDLTDMNLLSLP-SSI 517 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~-~l~~~---~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l-----~~Lr~L~L~~~~i~~lP-~si 517 (667)
..+++++|++.+|.+. .+|.. ..+++|++|++++|.. ..+|..+ +.+ ++|++|+|++|.+..+| ..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW--ATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC--SSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC--cchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 3678999999999986 56654 4789999999999987 4557654 776 99999999999999876 789
Q ss_pred cCCCcccEEecCC-ccc-c--cCCCCccChhhh--cCCCCCCeEEeecCCCCCCCC---C-CcCCCCCCeeEEEecCccC
Q 038110 518 GLLTNLHTLCLYG-GVG-V--VDGVKNASLEEL--KHFPNLTSLELEVNDANTLPR---G-GLFFEKPERYKILTGHRWS 587 (667)
Q Consensus 518 ~~L~~L~~L~L~~-~l~-~--LP~~~~~~~~~l--~~L~~L~~L~l~~~~l~~lP~---~-~~~l~~L~~l~~~~~~~~~ 587 (667)
+++++|++|+|++ .+. . +| ..+ +++++|++|++++|.+..+|. . +..+++|+.|+++.+.-..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLI-------SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHH-------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred ccCCCCCEEECCCCCcCcchHHH-------HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 9999999999998 432 2 34 455 899999999999999885543 2 2377899999887655333
Q ss_pred CC--cccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCC
Q 038110 588 RG--FYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 588 ~~--~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
.. ........++.+.++.+.....+..+. ++|+.|+|++| .+..+|. + ..+++|+.|++++|+-.
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N---~l~~~p~-~--~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYN---RLDRNPS-P--DELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSS---CCCSCCC-T--TTSCEEEEEECTTCTTT
T ss_pred ccchhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCC---CCCCChh-H--hhCCCCCEEeccCCCCC
Confidence 22 112224668888888866655544433 79999999999 5666666 6 88999999999999753
No 47
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.52 E-value=4.3e-14 Score=163.73 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=105.0
Q ss_pred cccccceeEEEEeccCcc-ccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCccccCCCc
Q 038110 446 ESRVRHCTSIVILDVKTY-VLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPSSIGLLTN 522 (667)
Q Consensus 446 ~~~~~~lr~L~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~si~~L~~ 522 (667)
....++++.|++.+|.+. .+|... .+++|+.|++.+|... ..+|..+ ..+++|++|+|++|.+. .+|..++++++
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-GEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-SCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-CcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 345677888888888775 444433 6888899999888875 6777776 88999999999999888 67888999999
Q ss_pred ccEEecCC-ccc-ccCCCCccChhhhcCCCCCCeEEeecCCCC-CCCCCCcCCCCCCeeEEEecC
Q 038110 523 LHTLCLYG-GVG-VVDGVKNASLEELKHFPNLTSLELEVNDAN-TLPRGGLFFEKPERYKILTGH 584 (667)
Q Consensus 523 L~~L~L~~-~l~-~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~-~lP~~~~~l~~L~~l~~~~~~ 584 (667)
|++|+|++ .+. .+| ..++++++|++|++++|.+. .+|..+..+++|+.|++..+.
T Consensus 492 L~~L~L~~N~l~~~~p-------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIP-------KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCEEECCSSCCCSCCC-------GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCEEEccCCccCCcCC-------hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 99999988 554 678 88999999999999999876 678888889999999887543
No 48
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=8.2e-14 Score=140.34 Aligned_cols=184 Identities=18% Similarity=0.144 Sum_probs=145.5
Q ss_pred CCCccccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCC
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLL 520 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L 520 (667)
.++....+++++.|++.+|.+..++....+++|++|++++|.. ..+|...|.++++|++|+|++|.+..+|.. ++.+
T Consensus 55 ~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 132 (272)
T 3rfs_A 55 SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132 (272)
T ss_dssp CCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred cccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCcc--CccChhHhcCCcCCCEEECCCCcCCccCHHHhccC
Confidence 4455667889999999999998887666899999999999987 677777779999999999999999988765 7999
Q ss_pred CcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCc-ccccccc
Q 038110 521 TNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGF-YRSSNKS 597 (667)
Q Consensus 521 ~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~ 597 (667)
++|++|++++ .+..+|. ..++++++|++|++++|.+..+|.. +..+++|+.|++..+.-..++. .......
T Consensus 133 ~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPK------GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CCCCEEECCCCccCccCH------HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 9999999999 7888872 4468999999999999999999886 4689999999888665333332 2233456
Q ss_pred cceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhh
Q 038110 598 YRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNEL 642 (667)
Q Consensus 598 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l 642 (667)
++.+.+.++.... .+++|+.|++..| ...+.+|.++
T Consensus 207 L~~L~l~~N~~~~-------~~~~l~~l~~~~n--~~~g~ip~~~ 242 (272)
T 3rfs_A 207 LQYIWLHDNPWDC-------TCPGIRYLSEWIN--KHSGVVRNSA 242 (272)
T ss_dssp CCEEECCSSCBCC-------CTTTTHHHHHHHH--HTGGGBBCTT
T ss_pred CCEEEccCCCccc-------cCcHHHHHHHHHH--hCCCcccCcc
Confidence 7777777754432 1356777777777 5556677776
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.52 E-value=2.8e-14 Score=148.18 Aligned_cols=194 Identities=12% Similarity=0.159 Sum_probs=143.8
Q ss_pred cceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-CccccCCCcccEEec
Q 038110 450 RHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCL 528 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L~~L~L 528 (667)
.+++.+.+.++.+..+|... .++|++|++++|.. ..+++..|.++++|++|+|++|.++.+ |..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 46788999999998888754 57999999999987 567665569999999999999999977 788999999999999
Q ss_pred CC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccC--C-Cc-ccc---------
Q 038110 529 YG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWS--R-GF-YRS--------- 593 (667)
Q Consensus 529 ~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~--~-~~-~~~--------- 593 (667)
++ .+..+| ..+. ++|++|++++|.+..+|.. +..+++|+.|++..+.... . +. +..
T Consensus 110 ~~n~l~~l~-------~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~ 180 (332)
T 2ft3_A 110 SKNHLVEIP-------PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180 (332)
T ss_dssp CSSCCCSCC-------SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCC
T ss_pred CCCcCCccC-------cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECc
Confidence 99 888999 5555 8999999999999999986 6789999999887554211 1 10 111
Q ss_pred ----------cccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccc-hhhhhccCCCccEEEeecCCC
Q 038110 594 ----------SNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFV-NELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 594 ----------~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~l~~L~~L~l~~~~~ 660 (667)
....++.+.++.+............+++|+.|+|++| .+..++ ..+ ..+++|+.|++++|.-
T Consensus 181 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N---~l~~~~~~~~--~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN---QIRMIENGSL--SFLPTLRELHLDNNKL 253 (332)
T ss_dssp SSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS---CCCCCCTTGG--GGCTTCCEEECCSSCC
T ss_pred CCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC---cCCcCChhHh--hCCCCCCEEECCCCcC
Confidence 1123444445544433333222234468888888887 444444 356 7788999999988854
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.51 E-value=1.1e-13 Score=153.94 Aligned_cols=179 Identities=19% Similarity=0.194 Sum_probs=138.5
Q ss_pred CCCccccccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-cc
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IG 518 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~ 518 (667)
.+|. ...+++++|++++|.+..++. ...+++|++|++++|.. ..+++..|+++++|++|+|++|.+..+|.. ++
T Consensus 19 ~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 19 SIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred cccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 4443 234789999999999987753 34899999999999987 556655569999999999999999988765 99
Q ss_pred CCCcccEEecCC-cccc--cCCCCccChhhhcCCCCCCeEEeecCC-CCCCCC-CCcCCCCCCeeEEEecCccC-CCccc
Q 038110 519 LLTNLHTLCLYG-GVGV--VDGVKNASLEELKHFPNLTSLELEVND-ANTLPR-GGLFFEKPERYKILTGHRWS-RGFYR 592 (667)
Q Consensus 519 ~L~~L~~L~L~~-~l~~--LP~~~~~~~~~l~~L~~L~~L~l~~~~-l~~lP~-~~~~l~~L~~l~~~~~~~~~-~~~~~ 592 (667)
++++|++|++++ .+.. .| ..++++++|++|++++|. +..+|. .+..+++|+.|++..+.-.. .+...
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~-------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVT-------SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSS-------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred cCCCCcEEECCCCcccccchh-------hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 999999999999 6664 45 678999999999999998 788875 57789999999988665322 22222
Q ss_pred ccccccceEEeecCccccchHHHHHHhhhcceeecccc
Q 038110 593 SSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGL 630 (667)
Q Consensus 593 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 630 (667)
.....++.+.+..+.....+......+++|+.|++++|
T Consensus 169 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred hccccCceEecccCcccccchhhHhhcccccEEEccCC
Confidence 33445667777776555555555556789999999998
No 51
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.51 E-value=3.4e-14 Score=160.85 Aligned_cols=206 Identities=12% Similarity=0.122 Sum_probs=121.3
Q ss_pred ccccc-eeEEEEeccCccccCCCC---CCCCccEEEccCCCCccccccHHHHh-------CCCCCcEEEcCCCCCccCCc
Q 038110 447 SRVRH-CTSIVILDVKTYVLPEVM---ECPQLKLFSMPAEKNSFFAIPHNLFR-------SMLQVRVLDLTDMNLLSLPS 515 (667)
Q Consensus 447 ~~~~~-lr~L~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~lp~~~~~-------~l~~Lr~L~L~~~~i~~lP~ 515 (667)
..+.+ ++.|++.+|.+..+|... .+++|++|++++|... ..+|..+ . .+.+|++|+|++|.+..+|.
T Consensus 373 ~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l-~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNF-DPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp EEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT-TTTTCSS-CTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred hhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC-Ccchhhh-cccccccccCCCCCEEECcCCccCcCCH
Confidence 34445 777777777766666543 2336777777776664 4444443 4 56677777777777777766
Q ss_pred ccc-CCCcccEEecCC-cccccCCCCccC-hhhhcCCCCCCeEEeecCCCCCCCCCCc--CCCCCCeeEEEecCccCCCc
Q 038110 516 SIG-LLTNLHTLCLYG-GVGVVDGVKNAS-LEELKHFPNLTSLELEVNDANTLPRGGL--FFEKPERYKILTGHRWSRGF 590 (667)
Q Consensus 516 si~-~L~~L~~L~L~~-~l~~LP~~~~~~-~~~l~~L~~L~~L~l~~~~l~~lP~~~~--~l~~L~~l~~~~~~~~~~~~ 590 (667)
.+. .+++|++|+|++ .+..+|...... ...+.++++|++|++++|.+..+|..+. .+++|+.|++..+.-..++.
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~ 530 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh
Confidence 544 467777777776 555666210000 0011223367777777777777776655 67777777666554333443
Q ss_pred ccccccccceEEeec------CccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCC
Q 038110 591 YRSSNKSYRSFRIDL------DANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 591 ~~~~~~~l~~l~l~~------~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
.......++.+.|+. +......+.....+++|+.|+|++| .++.+|..+ . ++|+.|+|++|+..
T Consensus 531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N---~l~~ip~~~--~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN---DIRKVNEKI--T--PNISVLDIKDNPNI 600 (636)
T ss_dssp GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS---CCCBCCSCC--C--TTCCEEECCSCTTC
T ss_pred hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC---cCCccCHhH--h--CcCCEEECcCCCCc
Confidence 333345566666632 2222222222234578888888888 456777776 3 78888888888654
No 52
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=1.1e-13 Score=152.98 Aligned_cols=162 Identities=16% Similarity=0.078 Sum_probs=78.2
Q ss_pred cceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecC
Q 038110 450 RHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLY 529 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~ 529 (667)
++++.|++++|.+..+| ..+++|++|++++|.. ..+|. + ++ +|++|+|++|.++.+|. .+++|++|+|+
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l--~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDNRL--STLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCC--SCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCCCC--CCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEeCC
Confidence 44555555555555554 2345555555555544 23444 2 32 55555555555555554 34555555555
Q ss_pred C-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeecCcc
Q 038110 530 G-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDAN 608 (667)
Q Consensus 530 ~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 608 (667)
+ .+..+| . .+++|++|++++|.++.+|. +. ++|+.|+++.+.-..++. ....+
T Consensus 149 ~N~l~~lp-------~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~---~~~~L---------- 202 (571)
T 3cvr_A 149 NNQLTMLP-------E---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA---VPVRN---------- 202 (571)
T ss_dssp SSCCSCCC-------C---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC---CC-------------
T ss_pred CCccCcCC-------C---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh---HHHhh----------
Confidence 5 444455 2 34455555555555555555 33 455555444332222221 11111
Q ss_pred ccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 609 VRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 609 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
....+.|+.|+|++| .+..+|.++ ..+++|+.|+|++|+-
T Consensus 203 -------~~~~~~L~~L~Ls~N---~l~~lp~~l--~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 203 -------HHSEETEIFFRCREN---RITHIPENI--LSLDPTCTIILEDNPL 242 (571)
T ss_dssp ------------CCEEEECCSS---CCCCCCGGG--GGSCTTEEEECCSSSC
T ss_pred -------hcccccceEEecCCC---cceecCHHH--hcCCCCCEEEeeCCcC
Confidence 001122366666666 444566666 4466666666666653
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.50 E-value=1.7e-13 Score=153.36 Aligned_cols=187 Identities=15% Similarity=0.065 Sum_probs=110.2
Q ss_pred cccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEe
Q 038110 448 RVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLC 527 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~ 527 (667)
.+++++.|++++|.+..+|. .+++|++|++++|.. ..+|. .+++|++|++++|.++.+|.. +++|++|+
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l--~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~ 147 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPL--THLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELS 147 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCC--CCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEE
T ss_pred cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcC--CCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEE
Confidence 34556666666666555554 455666666655554 34443 345555555555555555543 25666666
Q ss_pred cCC-cccccCCCCccChhhhcC--------------CCCCCeEEeecCCCCCCCCCCcC-----------------CCCC
Q 038110 528 LYG-GVGVVDGVKNASLEELKH--------------FPNLTSLELEVNDANTLPRGGLF-----------------FEKP 575 (667)
Q Consensus 528 L~~-~l~~LP~~~~~~~~~l~~--------------L~~L~~L~l~~~~l~~lP~~~~~-----------------l~~L 575 (667)
|++ .+..+|. .+..+.. +++|++|++++|.+..+|..+.+ +++|
T Consensus 148 Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L 223 (622)
T 3g06_A 148 VSDNQLASLPA----LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGL 223 (622)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred CcCCcCCCcCC----ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCC
Confidence 666 4444441 0112222 26667777777766666654211 1445
Q ss_pred CeeEEEecCccCCCcccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEe
Q 038110 576 ERYKILTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQI 655 (667)
Q Consensus 576 ~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l 655 (667)
+.|+++.+. +..++.....++.+.|+++.....+. .+++|+.|+|++| .+..+|..+ ..+++|+.|+|
T Consensus 224 ~~L~Ls~N~---L~~lp~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N---~L~~lp~~l--~~l~~L~~L~L 291 (622)
T 3g06_A 224 KELIVSGNR---LTSLPVLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN---QLTRLPESL--IHLSSETTVNL 291 (622)
T ss_dssp CEEECCSSC---CSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS---CCCSCCGGG--GGSCTTCEEEC
T ss_pred CEEEccCCc---cCcCCCCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC---CCCcCCHHH--hhccccCEEEe
Confidence 555554332 22233444566777777765554443 4578999999988 566789888 88999999999
Q ss_pred ecCCCC
Q 038110 656 EGYRGP 661 (667)
Q Consensus 656 ~~~~~l 661 (667)
++|+-.
T Consensus 292 ~~N~l~ 297 (622)
T 3g06_A 292 EGNPLS 297 (622)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 999754
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.50 E-value=1.8e-13 Score=149.03 Aligned_cols=136 Identities=14% Similarity=0.139 Sum_probs=94.6
Q ss_pred CCCccccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCC
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLT 521 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~ 521 (667)
.++....+++++.|++++|.+..++....+++|++|++++|.. ..++. |+++++|++|++++|.++.+|. +++++
T Consensus 60 ~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 60 SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI--ADITP--LANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred cCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcc--ccChh--hcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 3455566788899999988888777756788899998888876 45655 4888888888888888888876 88888
Q ss_pred cccEEecCC-cccccCC-------------CCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEec
Q 038110 522 NLHTLCLYG-GVGVVDG-------------VKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTG 583 (667)
Q Consensus 522 ~L~~L~L~~-~l~~LP~-------------~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~ 583 (667)
+|++|++++ .+..+|. .....+..++++++|++|++++|.+..+|. +..+++|+.|++..+
T Consensus 135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNN 209 (466)
T ss_dssp TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCC
Confidence 888888877 4444431 001111235666777777777776666553 355666666665543
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.50 E-value=1.6e-13 Score=149.47 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=104.5
Q ss_pred cccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEe
Q 038110 448 RVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLC 527 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~ 527 (667)
.+.+++.|++.++.+..+|....+++|++|++++|.. ..+|+ |.++++|++|++++|.+..+|. ++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCcc--CCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 4578999999999999888777899999999999987 56776 5999999999999999999887 99999999999
Q ss_pred cCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEE
Q 038110 528 LYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKIL 581 (667)
Q Consensus 528 L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~ 581 (667)
+++ .+..+| . ++++++|++|++++|.+..+|. +..+++|+.|.+.
T Consensus 119 L~~n~l~~~~-------~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 119 LFNNQITDID-------P-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG 164 (466)
T ss_dssp CCSSCCCCCG-------G-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEE
T ss_pred CCCCCCCCCh-------H-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecC
Confidence 999 788887 4 8999999999999998887774 5667777777664
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=5.7e-14 Score=144.16 Aligned_cols=171 Identities=12% Similarity=0.093 Sum_probs=138.9
Q ss_pred CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccChhhh
Q 038110 468 VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEEL 546 (667)
Q Consensus 468 ~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l 546 (667)
...+++|++|.+.++.. ..+|. +..+++|++|+|++|.+..+|. ++.+++|++|+|++ .+..+| .+
T Consensus 37 ~~~l~~L~~L~l~~~~i--~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--------~~ 103 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGV--TTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--------AI 103 (308)
T ss_dssp HHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--------GG
T ss_pred HHHcCCcCEEEeeCCCc--cCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--------hh
Confidence 33678999999999977 56773 4999999999999999999988 99999999999999 777776 59
Q ss_pred cCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeecCccccchHHHHHHhhhcceee
Q 038110 547 KHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELS 626 (667)
Q Consensus 547 ~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 626 (667)
.++++|++|++++|.+..+|. +..+++|+.|++..+.-..++. ......++.+.++.+....... ...+++|+.|+
T Consensus 104 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 179 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179 (308)
T ss_dssp TTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred cCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEE
Confidence 999999999999999999886 6889999999988665444433 2334567788888766555444 34568999999
Q ss_pred ccccccccccccchhhhhccCCCccEEEeecCCCC
Q 038110 627 LAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 627 L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
|++| .+..++. + ..+++|+.|++++|.-.
T Consensus 180 l~~n---~l~~~~~-l--~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 180 ADDN---KISDISP-L--ASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CCSS---CCCCCGG-G--GGCTTCCEEECTTSCCC
T ss_pred CCCC---ccCcChh-h--cCCCCCCEEEccCCccC
Confidence 9999 5555654 6 88999999999998643
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=8.4e-14 Score=137.34 Aligned_cols=187 Identities=12% Similarity=0.077 Sum_probs=144.0
Q ss_pred eccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCC-CccCCc-cccCCCcccEEecCC--ccc
Q 038110 458 LDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMN-LLSLPS-SIGLLTNLHTLCLYG--GVG 533 (667)
Q Consensus 458 ~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~-i~~lP~-si~~L~~L~~L~L~~--~l~ 533 (667)
..+++..+|. -.++|+.|++++|.. ..+|...|.++++|++|++++|. ++.+|. .++++++|++|++++ .+.
T Consensus 19 ~c~~l~~ip~--~~~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 19 TCKDIQRIPS--LPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp EECSCSSCCC--CCTTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred EccCccccCC--CCCcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 3444777777 456899999999987 67887667999999999999997 998876 789999999999985 788
Q ss_pred ccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCC---eeEEEec-CccCCCc-ccccccccc-eEEeecCc
Q 038110 534 VVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPE---RYKILTG-HRWSRGF-YRSSNKSYR-SFRIDLDA 607 (667)
Q Consensus 534 ~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~---~l~~~~~-~~~~~~~-~~~~~~~l~-~l~l~~~~ 607 (667)
.+|. ..|.++++|++|++++|.+..+|. +..+++|+ .|++..+ .-..++. .......++ .+.++.+.
T Consensus 95 ~i~~------~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 95 YIDP------DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EECT------TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred EcCH------HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 8873 568899999999999999999998 67777787 8888765 3222222 122344566 77777766
Q ss_pred cccchHHHHHHhhhcceeeccccccccccccchh-hhhccC-CCccEEEeecCCC
Q 038110 608 NVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNE-LVKVGS-SQLKYLQIEGYRG 660 (667)
Q Consensus 608 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-l~~~~l-~~L~~L~l~~~~~ 660 (667)
....+...... ++|+.|+|++| ..+..+|.. + ..+ ++|+.|++++|+-
T Consensus 168 l~~i~~~~~~~-~~L~~L~L~~n--~~l~~i~~~~~--~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 168 FTSVQGYAFNG-TKLDAVYLNKN--KYLTVIDKDAF--GGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp CCEECTTTTTT-CEEEEEECTTC--TTCCEECTTTT--TTCSBCCSEEECTTCCC
T ss_pred CcccCHhhcCC-CCCCEEEcCCC--CCcccCCHHHh--hccccCCcEEECCCCcc
Confidence 55555444334 69999999999 436667644 5 778 9999999999864
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=2.5e-14 Score=156.40 Aligned_cols=195 Identities=11% Similarity=0.070 Sum_probs=127.5
Q ss_pred cceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-----------
Q 038110 450 RHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS----------- 516 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s----------- 516 (667)
++++.|++++|.+..+++ ...+++|++|++++|... .+++ |+.+++|++|+|++|.++.+|..
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N 109 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY--ETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE--EEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC--CCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence 467777777776665543 226677777777776653 2333 36777777777777666655432
Q ss_pred ------ccCCCcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCC-CCCCc-CCCCCCeeEEEecCccC
Q 038110 517 ------IGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTL-PRGGL-FFEKPERYKILTGHRWS 587 (667)
Q Consensus 517 ------i~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~l-P~~~~-~l~~L~~l~~~~~~~~~ 587 (667)
...+++|++|+|++ .+..++ +..++++++|++|++++|.+..+ |..+. .+++|+.|+++.+.-..
T Consensus 110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 110 NISRVSCSRGQGKKNIYLANNKITMLR------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCCCEEECCCSSCEEEECCSSCCCSGG------GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCCCCccccCCCCEEECCCCCCCCCC------chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 01234555555555 444442 15677888888888888887764 44444 68888888877554333
Q ss_pred CCcccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCC
Q 038110 588 RGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 588 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
++... ....++.|.|+++.....++.+ ..+++|+.|+|++| .+..+|.++ ..+++|+.|++++|+..
T Consensus 184 ~~~~~-~l~~L~~L~Ls~N~l~~~~~~~-~~l~~L~~L~Ls~N---~l~~lp~~l--~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 VKGQV-VFAKLKTLDLSSNKLAFMGPEF-QSAAGVTWISLRNN---KLVLIEKAL--RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECCC-CCTTCCEEECCSSCCCEECGGG-GGGTTCSEEECTTS---CCCEECTTC--CCCTTCCEEECTTCCBC
T ss_pred ccccc-cCCCCCEEECCCCCCCCCCHhH-cCCCCccEEEecCC---cCcccchhh--ccCCCCCEEEcCCCCCc
Confidence 32222 2556778888887666665553 45589999999998 566688888 88899999999998754
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=160.79 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=107.4
Q ss_pred cCCCccccccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-Cccc
Q 038110 441 WEWSDESRVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSI 517 (667)
Q Consensus 441 ~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si 517 (667)
...|. .++++++|++++|.+..++. ...+++|++|++++|... ..+++..|.++++|++|+|++|.+..+ |..|
T Consensus 17 ~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 17 TQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-CEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 34555 67899999999999977643 338999999999999654 677555569999999999999999966 8899
Q ss_pred cCCCcccEEecCC-cccc-cCCCCccChhh--hcCCCCCCeEEeecCCCCCCCC--CCcCCCCCCeeEEEecC
Q 038110 518 GLLTNLHTLCLYG-GVGV-VDGVKNASLEE--LKHFPNLTSLELEVNDANTLPR--GGLFFEKPERYKILTGH 584 (667)
Q Consensus 518 ~~L~~L~~L~L~~-~l~~-LP~~~~~~~~~--l~~L~~L~~L~l~~~~l~~lP~--~~~~l~~L~~l~~~~~~ 584 (667)
++|.+|++|+|++ .+.. +| .. +++|++|++|++++|.+..++. .+.++++|+.|++..+.
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~-------~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVL-------KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCS-------TTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred cCCcccCEeeCcCCCCCcccc-------cCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 9999999999998 5554 45 44 7888889999998888777643 46788888888877543
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.48 E-value=1.5e-13 Score=155.00 Aligned_cols=202 Identities=14% Similarity=0.079 Sum_probs=149.3
Q ss_pred CCCccccccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-Ccccc
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSIG 518 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si~ 518 (667)
.+|. ..++++++|++++|.+..++. ...+++|++|++++|.. ..+++..|.++++|++|+|++|.++.+ |.+|+
T Consensus 25 ~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 25 KVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp SCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred cCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 4443 345889999999999987765 33899999999999987 566555569999999999999999977 88899
Q ss_pred CCCcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCC--CCCCCCcCCCCCCeeEEEecCccCCC--cccc
Q 038110 519 LLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDAN--TLPRGGLFFEKPERYKILTGHRWSRG--FYRS 593 (667)
Q Consensus 519 ~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~--~lP~~~~~l~~L~~l~~~~~~~~~~~--~~~~ 593 (667)
+|++|++|++++ .+..+|. ..++++++|++|++++|.+. .+|..+.++++|+.|++..+.-..+. .+..
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLES------FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSS------SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred CcccCCEEEccCCccccccc------cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 999999999999 7777763 56899999999999999987 47888889999999988755422221 1111
Q ss_pred cc---cccceEEeecCccccchHHHHHHhhhcceeeccccccccc-cccchhhhhccCCCccEEEeec
Q 038110 594 SN---KSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDI-KNFVNELVKVGSSQLKYLQIEG 657 (667)
Q Consensus 594 ~~---~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~l~~~~l~~L~~L~l~~ 657 (667)
+. ..+..+.++.+.....++..... .+|+.|++++| ... ..+|.++ ..+++|+.+.+..
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n--~~~~~~~~~~~--~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGN--FNSSNIMKTCL--QNLAGLHVHRLIL 238 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESC--CSCHHHHHHHH--HTTTTCEEEEEEE
T ss_pred hhccccccceeeccCCCcceeCcccccC-ceeeeeeccCC--ccchhHHHHHh--ccccccccccccc
Confidence 11 11335666666555554444333 38889999888 322 3466777 7888888877753
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.48 E-value=1.1e-13 Score=156.04 Aligned_cols=182 Identities=12% Similarity=-0.004 Sum_probs=95.7
Q ss_pred CCCCccEEEccCCCCccccc---cHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCC--------
Q 038110 470 ECPQLKLFSMPAEKNSFFAI---PHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDG-------- 537 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~l---p~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~-------- 537 (667)
.+++|++|++++|... .+ |..+ ..+++|++|++++|.+..+|..++.+++|++|++++ .+..++.
T Consensus 348 ~l~~L~~L~ls~n~l~--~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALS--FSGCCSYSD-LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCTTCCEEECCSSCEE--EEEECCHHH-HCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred cCCCCCEEECcCCccC--CCcchhhhh-ccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 4566666666666542 22 4544 778888888888888777777777788888888877 4444330
Q ss_pred -------CC----ccChhhhcCCCCCCeEEeecCCCCC--CCCCCcCCCCCCeeEEEecCccCC-CcccccccccceEEe
Q 038110 538 -------VK----NASLEELKHFPNLTSLELEVNDANT--LPRGGLFFEKPERYKILTGHRWSR-GFYRSSNKSYRSFRI 603 (667)
Q Consensus 538 -------~~----~~~~~~l~~L~~L~~L~l~~~~l~~--lP~~~~~l~~L~~l~~~~~~~~~~-~~~~~~~~~l~~l~l 603 (667)
+. ...+..++++++|++|++++|.+.. +|..+..+++|+.|++..+.-..+ +........++.+.+
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 00 0011334444445555554444432 344444455555554443321111 111122344555555
Q ss_pred ecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCC-CccEEEeecCC
Q 038110 604 DLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSS-QLKYLQIEGYR 659 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~-~L~~L~l~~~~ 659 (667)
+.+......+.....+++|+.|+|++| .+..+|..+ ..++ +|+.|++++|+
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N---~l~~~p~~~--~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFN---RIETSKGIL--QHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTS---CCCCEESCG--GGSCTTCCEEECCSCC
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCC---cCcccCHhH--hhhcccCcEEEccCCC
Confidence 554444433333333456666666666 344566655 5554 46666666665
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.48 E-value=1.1e-13 Score=154.10 Aligned_cols=193 Identities=11% Similarity=0.045 Sum_probs=146.7
Q ss_pred ccceeEEEEeccCccccCCCC--CCCCccEEEccCCCCccccccHH--HHhCCCCCcEEEcCCCCCccCCc---cccCCC
Q 038110 449 VRHCTSIVILDVKTYVLPEVM--ECPQLKLFSMPAEKNSFFAIPHN--LFRSMLQVRVLDLTDMNLLSLPS---SIGLLT 521 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~lp~~--~~~~l~~Lr~L~L~~~~i~~lP~---si~~L~ 521 (667)
..+++.|.+.+|.+..+|... .+++|++|++++|... ..+|.. .++.+++|++|+|++|.++.+|. .++.++
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV-EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC-HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCccccCCHHHHhcCccccEEEccCCccc-cccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 357888888888888777654 5889999999988875 444433 14788899999999998888763 588889
Q ss_pred cccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccce
Q 038110 522 NLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRS 600 (667)
Q Consensus 522 ~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~ 600 (667)
+|++|++++ .+..+| ..++.+++|++|++++|.+..+|..+ .++|+.|+++.+. +.........++.
T Consensus 388 ~L~~L~Ls~N~l~~lp-------~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~---l~~~~~~l~~L~~ 455 (549)
T 2z81_A 388 NLTSLDISRNTFHPMP-------DSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNN---LDSFSLFLPRLQE 455 (549)
T ss_dssp TCCEEECTTCCCCCCC-------SCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSC---CSCCCCCCTTCCE
T ss_pred CCCEEECCCCCCccCC-------hhhcccccccEEECCCCCcccccchh--cCCceEEECCCCC---hhhhcccCChhcE
Confidence 999999988 788888 78888899999999999888888764 3678888877543 3333345567888
Q ss_pred EEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 601 FRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 601 l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
+.++.+.....+.. ..+++|+.|+|++| .-....|..+ ..+++|+.|++++|+-
T Consensus 456 L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N--~l~~~~~~~~--~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 456 LYISRNKLKTLPDA--SLFPVLLVMKISRN--QLKSVPDGIF--DRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EECCSSCCSSCCCG--GGCTTCCEEECCSS--CCCCCCTTGG--GGCTTCCEEECCSSCB
T ss_pred EECCCCccCcCCCc--ccCccCCEEecCCC--ccCCcCHHHH--hcCcccCEEEecCCCc
Confidence 88888766555442 35689999999999 3333334457 8899999999999973
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.47 E-value=2.3e-13 Score=147.55 Aligned_cols=186 Identities=14% Similarity=0.098 Sum_probs=120.1
Q ss_pred CccccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcc
Q 038110 444 SDESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNL 523 (667)
Q Consensus 444 ~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L 523 (667)
+....++++++|++.+|.+..++ ...+++|++|++++|.. ..+| |+++++|++|++++|.++.+| ++.+++|
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l--~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L 129 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKL--TNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLL 129 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC--SCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTC
T ss_pred hhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCC--ceee---cCCCCcCCEEECCCCcCCeec--CCCCCcC
Confidence 34455566777777776666654 34566777777776665 3444 366777777777777766665 6667777
Q ss_pred cEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCC-CCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceE
Q 038110 524 HTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVND-ANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSF 601 (667)
Q Consensus 524 ~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~-l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l 601 (667)
++|++++ .+..+| ++++++|++|++++|. +..++ +..+++|+.|++..+.-..++ ......++.+
T Consensus 130 ~~L~l~~N~l~~l~---------l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L 196 (457)
T 3bz5_A 130 TYLNCARNTLTEID---------VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD--VSQNKLLNRL 196 (457)
T ss_dssp CEEECTTSCCSCCC---------CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEE
T ss_pred CEEECCCCccceec---------cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccceec--cccCCCCCEE
Confidence 7777766 555555 6677777777777773 55553 456777777777655433332 2233456677
Q ss_pred EeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 602 RIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 602 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
.++.+...... ...+++|+.|++++| .+..+| + ..+++|+.|++++|.-
T Consensus 197 ~l~~N~l~~~~---l~~l~~L~~L~Ls~N---~l~~ip--~--~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 197 NCDTNNITKLD---LNQNIQLTFLDCSSN---KLTEID--V--TPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCSEEECCSS---CCSCCC--C--TTCTTCSEEECCSSCC
T ss_pred ECcCCcCCeec---cccCCCCCEEECcCC---cccccC--c--cccCCCCEEEeeCCcC
Confidence 77765444331 234578999999888 455566 5 7889999999998864
No 64
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.47 E-value=3e-13 Score=154.67 Aligned_cols=129 Identities=18% Similarity=0.231 Sum_probs=103.2
Q ss_pred cccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~ 524 (667)
.+.++++|++++|.+..++.. ..+++|++|++++|.. ..+++..|+++++|++|+|++|.+..+|. +|+++++|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 347899999999988877753 3789999999999877 45555556999999999999999998887 589999999
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecC
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGH 584 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~ 584 (667)
+|++++ .+..+|. ..|+++++|++|++++|.+..+|.. +.++++|+.|++..+.
T Consensus 101 ~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 101 ELHLMSNSIQKIKN------NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp EEECCSSCCCCCCS------CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred EEECCCCccCccCh------hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 999998 6777762 5688888999999998887766544 6678888888776543
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=1.6e-13 Score=139.40 Aligned_cols=174 Identities=17% Similarity=0.134 Sum_probs=142.5
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-CccccCCCcccEEecCC-cccccCCCCccChhhhc
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELK 547 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~ 547 (667)
.+++++.+++.++.. ..+|..+ .+.|++|+|++|.+..+ |..+..+++|++|+|++ .+..+| . .+
T Consensus 8 ~l~~l~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~-~~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKRNL--TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-------V-DG 74 (290)
T ss_dssp CSTTCCEEECTTSCC--SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-------C-CS
T ss_pred ccCCccEEECCCCCC--CcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-------C-CC
Confidence 578899999999887 6888766 37899999999999977 56799999999999999 888888 3 38
Q ss_pred CCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCC-cccccccccceEEeecCccccchHHHHHHhhhcceee
Q 038110 548 HFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRG-FYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELS 626 (667)
Q Consensus 548 ~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 626 (667)
.+++|++|++++|.+..+|..+..+++|+.|++..+.-..++ ........++.+.++.+.....+......+++|+.|+
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 899999999999999999998889999999998866544443 2234456788888888776666655555668999999
Q ss_pred ccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 627 LAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 627 L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
|++| .+..+|.... ..+++|+.|++++|.-
T Consensus 155 L~~N---~l~~l~~~~~-~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 155 LANN---NLTELPAGLL-NGLENLDTLLLQENSL 184 (290)
T ss_dssp CTTS---CCSCCCTTTT-TTCTTCCEEECCSSCC
T ss_pred CCCC---cCCccCHHHh-cCcCCCCEEECCCCcC
Confidence 9999 6667776542 6799999999999864
No 66
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.46 E-value=5.4e-13 Score=144.54 Aligned_cols=161 Identities=14% Similarity=0.035 Sum_probs=109.8
Q ss_pred cccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccE
Q 038110 446 ESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHT 525 (667)
Q Consensus 446 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~ 525 (667)
...+++++.|++.+|.+..++ ...+++|++|++++|.. ..+| ++++++|++|++++|.++.+| ++.+++|++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l--~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~ 152 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKL--TKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTE 152 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCC--SCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCE
T ss_pred cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcC--Ceec---CCCCCcCCEEECCCCccceec--cccCCcCCE
Confidence 445677888888888777664 44677888888888766 4455 477888888888888877775 777888888
Q ss_pred EecCC--cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEe
Q 038110 526 LCLYG--GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRI 603 (667)
Q Consensus 526 L~L~~--~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l 603 (667)
|++++ .++.++ ++.+++|++|++++|.++.+| +..+++|+.|++..+.-..++ ......++.+.+
T Consensus 153 L~l~~n~~~~~~~---------~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~L 219 (457)
T 3bz5_A 153 LDCHLNKKITKLD---------VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDC 219 (457)
T ss_dssp EECTTCSCCCCCC---------CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEEC
T ss_pred EECCCCCcccccc---------cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEEC
Confidence 88877 444444 667778888888888877777 557777888777654433221 222345666777
Q ss_pred ecCccccchHHHHHHhhhcceeecccc
Q 038110 604 DLDANVRLKDRLVVQLRGIEELSLAGL 630 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~l~~L~~L~L~~~ 630 (667)
+.+.....+ ...+++|+.|++++|
T Consensus 220 s~N~l~~ip---~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 220 SSNKLTEID---VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CSSCCSCCC---CTTCTTCSEEECCSS
T ss_pred cCCcccccC---ccccCCCCEEEeeCC
Confidence 765544433 234467888888877
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.45 E-value=2.6e-13 Score=150.03 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=80.5
Q ss_pred cceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEe
Q 038110 450 RHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLC 527 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~ 527 (667)
+++++|++++|.+..++. ...+++|++|++++|.. ..+++..|+++++|++|+|++|.++.+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 677777777777766553 23677777777777766 344333347777777777777777777766 677777777
Q ss_pred cCC-cccc--cCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCC--CeeEEEecC
Q 038110 528 LYG-GVGV--VDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKP--ERYKILTGH 584 (667)
Q Consensus 528 L~~-~l~~--LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L--~~l~~~~~~ 584 (667)
|++ .+.. +| ..++++++|++|++++|.+.. ..+..+++| +.|.+..+.
T Consensus 97 L~~N~l~~~~~p-------~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 97 LSFNAFDALPIC-------KEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCSSCCSSCCCC-------GGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred ccCCccccccch-------hhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence 777 5543 45 677777777777777777654 224456666 777666543
No 68
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=1.2e-13 Score=154.32 Aligned_cols=167 Identities=16% Similarity=0.166 Sum_probs=123.5
Q ss_pred ccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L 526 (667)
..+.+++.|++.+|.+..++....+++|+.|++++|.. ..+|+ |..+++|++|+|++|.+..+| .++.|.+|++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 45678888999999888888766899999999999887 56666 589999999999999998877 68999999999
Q ss_pred ecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeec
Q 038110 527 CLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDL 605 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~ 605 (667)
+|++ .+..+| .+..|++|+.|+|++|.+..+ ..+..+++|+.|++..+....+.. ......++.|.|+.
T Consensus 115 ~Ls~N~l~~l~--------~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 115 SLEHNGISDIN--------GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 184 (605)
T ss_dssp ECTTSCCCCCG--------GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred EecCCCCCCCc--------cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcC
Confidence 9998 777766 588899999999999998888 345788899999887554333322 22233455555555
Q ss_pred CccccchHHHHHHhhhcceeecccc
Q 038110 606 DANVRLKDRLVVQLRGIEELSLAGL 630 (667)
Q Consensus 606 ~~~~~~~~~~~~~l~~L~~L~L~~~ 630 (667)
+..... +. ...+++|+.|+|++|
T Consensus 185 N~i~~l-~~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 185 NHISDL-RA-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp SCCCBC-GG-GTTCTTCSEEECCSE
T ss_pred CCCCCC-hH-HccCCCCCEEEccCC
Confidence 443333 12 223456666666666
No 69
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.45 E-value=3e-13 Score=146.79 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=70.4
Q ss_pred hhhcCCCCCCeEEeecCCCCCCCC-CCcCCCCCCeeEEEecCccCC-CcccccccccceEEeecCccccchHHHHHHhhh
Q 038110 544 EELKHFPNLTSLELEVNDANTLPR-GGLFFEKPERYKILTGHRWSR-GFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRG 621 (667)
Q Consensus 544 ~~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~l~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~ 621 (667)
..++++++|++|++++|.+..+++ .+..+++|+.|++..+.-..+ +........++.+.|+.+......+.....+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 446677777777777777776644 456777777777764442222 122233455677777776555543333344578
Q ss_pred cceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 622 IEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 622 L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
|+.|+|++| .+..+|.... ..+++|+.|+|++|+-
T Consensus 373 L~~L~L~~N---~l~~~~~~~~-~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 373 LKELALDTN---QLKSVPDGIF-DRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCEEECCSS---CCSCCCTTTT-TTCTTCCEEECCSSCB
T ss_pred ccEEECCCC---ccccCCHhHh-ccCCcccEEEccCCCc
Confidence 888888887 4455554321 6778888888888763
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=154.52 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=91.9
Q ss_pred cccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCC-ccccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP-~si~~L~~L~ 524 (667)
.++++++|++++|.+..++. ...+++|++|++++|.. ..+++..|.++++|++|+|++|.++.+| ..|+++.+|+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 34678888888887776653 23678888888888765 5566555688888888888888887664 5678888888
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCC--CCCCCcCCCCCCeeEEEec
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANT--LPRGGLFFEKPERYKILTG 583 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~--lP~~~~~l~~L~~l~~~~~ 583 (667)
+|++++ .+..+|. ..++++++|++|++++|.+.. +|..+.++++|+.|++..+
T Consensus 104 ~L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 104 KLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp EEECTTSCCCCSTT------CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cccccccccccCCC------ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 888887 6666662 247777777777777777664 5666667777777766543
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.44 E-value=5.5e-14 Score=145.00 Aligned_cols=190 Identities=9% Similarity=0.044 Sum_probs=110.6
Q ss_pred cceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecC
Q 038110 450 RHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLY 529 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~ 529 (667)
++++.|++.+|.+...++...+++|++|++++|.. ..+| ..++|++|++++|.+..+|.. .+++|++|+++
T Consensus 58 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l--~~l~-----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~ 128 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV--QELL-----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLA 128 (317)
T ss_dssp TTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEE--EEEE-----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECC
T ss_pred CcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcc--cccc-----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECC
Confidence 34444444444443333333444444444444433 2222 224444444444444444322 24556666666
Q ss_pred C-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-C-cCCCCCCeeEEEecCccCCCcccccccccceEEeecC
Q 038110 530 G-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-G-LFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLD 606 (667)
Q Consensus 530 ~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~-~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 606 (667)
+ .+..+|. ..++.+++|++|++++|.+..++.. + ..+++|+.|++..+.-..++... ....++.+.++.+
T Consensus 129 ~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N 201 (317)
T 3o53_A 129 NNKITMLRD------LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN 201 (317)
T ss_dssp SSCCCSGGG------BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSS
T ss_pred CCCCCCccc------hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCC
Confidence 6 5555541 3567778888888888877766543 3 25778888877644422222211 2456777777776
Q ss_pred ccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCC
Q 038110 607 ANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 607 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
.....++. ...+++|+.|+|++| .+..+|..+ ..+++|+.|++++|+-.
T Consensus 202 ~l~~l~~~-~~~l~~L~~L~L~~N---~l~~l~~~~--~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 202 KLAFMGPE-FQSAAGVTWISLRNN---KLVLIEKAL--RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCEECGG-GGGGTTCSEEECTTS---CCCEECTTC--CCCTTCCEEECTTCCCB
T ss_pred cCCcchhh-hcccCcccEEECcCC---cccchhhHh--hcCCCCCEEEccCCCcc
Confidence 66555544 345579999999998 666788888 88899999999998754
No 72
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.43 E-value=5.9e-13 Score=150.06 Aligned_cols=208 Identities=12% Similarity=0.023 Sum_probs=101.4
Q ss_pred cccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCcc-ccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPSS-IGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~s-i~~L~~L~ 524 (667)
..++++.|++.+|.+..+|... .+++|++|++++|.. ..+++..|.++++|++|++++|.+. .+|.. ++.+++|+
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF--ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCC--SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCc--CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 3455666666666555555433 455555665555554 2332222355555555555555443 33332 44455555
Q ss_pred EEecCC-ccccc---CC-------------CC----ccChhhhcCCCCCCeEEeecCCCCCC-CCC-CcCCCCCCeeEEE
Q 038110 525 TLCLYG-GVGVV---DG-------------VK----NASLEELKHFPNLTSLELEVNDANTL-PRG-GLFFEKPERYKIL 581 (667)
Q Consensus 525 ~L~L~~-~l~~L---P~-------------~~----~~~~~~l~~L~~L~~L~l~~~~l~~l-P~~-~~~l~~L~~l~~~ 581 (667)
+|++++ .+..+ |. +. ...+..++++++|++|++++|.+... |.. +..+++|+.|++.
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 555544 22222 20 00 00014555566666666666654433 222 4456666666554
Q ss_pred ecCccCC-CcccccccccceEEeecCccccc---hHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeec
Q 038110 582 TGHRWSR-GFYRSSNKSYRSFRIDLDANVRL---KDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEG 657 (667)
Q Consensus 582 ~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~ 657 (667)
.+.-... +........++.+.++++..... .......+++|+.|+|++| .-....|..+ ..+++|+.|++++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~--~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC--DLSSIDQHAF--TSLKMMNHVDLSH 509 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS--CCCEECTTTT--TTCTTCCEEECCS
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC--ccCccChhhh--ccccCCCEEECCC
Confidence 3331111 11122334566666666443221 1112234467777777777 3333335666 7788888888888
Q ss_pred CCCC
Q 038110 658 YRGP 661 (667)
Q Consensus 658 ~~~l 661 (667)
|.-.
T Consensus 510 N~l~ 513 (606)
T 3t6q_A 510 NRLT 513 (606)
T ss_dssp SCCC
T ss_pred CccC
Confidence 7543
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.43 E-value=4.8e-14 Score=145.41 Aligned_cols=189 Identities=10% Similarity=0.103 Sum_probs=141.8
Q ss_pred ccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEE
Q 038110 449 VRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L 526 (667)
.++++.|++++|.+..++. ...+++|++|++++|... .+++ |..+++|++|+|++|.++.+|. +++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY--ETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE--EEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC--cchh--hhhcCCCCEEECcCCccccccC----CCCcCEE
Confidence 4578899999888877663 237888999999888773 3444 5889999999999998887763 3788999
Q ss_pred ecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCC-CCcCCCCCCeeEEEecCccCCC--cccccccccceEE
Q 038110 527 CLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPR-GGLFFEKPERYKILTGHRWSRG--FYRSSNKSYRSFR 602 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~l~~~~~~~~~~~--~~~~~~~~l~~l~ 602 (667)
++++ .+..+| ...+++|++|++++|.+..+|+ .+..+++|+.|++..+....+. .+......++.+.
T Consensus 105 ~l~~n~l~~~~---------~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 105 HAANNNISRVS---------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp ECCSSCCSEEE---------ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred ECCCCccCCcC---------ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 9988 777776 3347889999999999998876 4668899999988755422221 1222346688888
Q ss_pred eecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCC
Q 038110 603 IDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 603 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
++.+.....+... .+++|+.|+|++| .+..+|+.+ ..+++|+.|++++|.-.
T Consensus 176 L~~N~l~~~~~~~--~l~~L~~L~Ls~N---~l~~l~~~~--~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 176 LQYNFIYDVKGQV--VFAKLKTLDLSSN---KLAFMGPEF--QSAAGVTWISLRNNKLV 227 (317)
T ss_dssp CTTSCCCEEECCC--CCTTCCEEECCSS---CCCEECGGG--GGGTTCSEEECTTSCCC
T ss_pred CCCCcCccccccc--ccccCCEEECCCC---cCCcchhhh--cccCcccEEECcCCccc
Confidence 8886655443222 2589999999999 666788888 88999999999999643
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.43 E-value=6.1e-13 Score=147.03 Aligned_cols=195 Identities=13% Similarity=0.163 Sum_probs=150.4
Q ss_pred ccccceeEEEEeccCccccCCCC-----CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCcc-CCccccCC
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVM-----ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLS-LPSSIGLL 520 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~-----~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lP~si~~L 520 (667)
..+++++.+.+..|.+ .+|... ...+|+.|.+++|... .++. +..+++|++|++++|.+.. +|..++++
T Consensus 273 ~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~--~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 347 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV--HMLC--PSKISPFLHLDFSNNLLTDTVFENCGHL 347 (520)
T ss_dssp CCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC--CCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCC
T ss_pred ccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc--cccc--hhhCCcccEEEeECCccChhhhhhhccC
Confidence 4567788888888777 555211 1256888888888763 3331 2689999999999999986 79999999
Q ss_pred CcccEEecCC-ccc---ccCCCCccChhhhcCCCCCCeEEeecCCCCC-CCCC-CcCCCCCCeeEEEecCccCCCccccc
Q 038110 521 TNLHTLCLYG-GVG---VVDGVKNASLEELKHFPNLTSLELEVNDANT-LPRG-GLFFEKPERYKILTGHRWSRGFYRSS 594 (667)
Q Consensus 521 ~~L~~L~L~~-~l~---~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~-lP~~-~~~l~~L~~l~~~~~~~~~~~~~~~~ 594 (667)
++|++|++++ .+. .+| ..++++++|++|++++|.+.. +|.+ +..+++|+.|++..+.-... .....
T Consensus 348 ~~L~~L~L~~N~l~~l~~~~-------~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l 419 (520)
T 2z7x_B 348 TELETLILQMNQLKELSKIA-------EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT-IFRCL 419 (520)
T ss_dssp SSCCEEECCSSCCCBHHHHH-------HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG-GGGSC
T ss_pred CCCCEEEccCCccCccccch-------HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc-hhhhh
Confidence 9999999998 555 566 789999999999999999887 9876 56889999998875542110 11222
Q ss_pred ccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchh-hhhccCCCccEEEeecCCC
Q 038110 595 NKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNE-LVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 595 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-l~~~~l~~L~~L~l~~~~~ 660 (667)
...++.+.++.+.....+..+. .+++|+.|+|++| .+..+|.. + ..+++|+.|++++|+-
T Consensus 420 ~~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N---~l~~l~~~~~--~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 420 PPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASN---QLKSVPDGIF--DRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSS---CCCCCCTTTT--TTCTTCCEEECCSSCB
T ss_pred cccCCEEECCCCcccccchhhh-cCCCCCEEECCCC---cCCccCHHHh--ccCCcccEEECcCCCC
Confidence 2578889998877766666555 6789999999999 66678877 6 8899999999999974
No 75
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.43 E-value=4.1e-13 Score=151.32 Aligned_cols=204 Identities=12% Similarity=0.068 Sum_probs=125.7
Q ss_pred cccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC---CccccC---
Q 038110 448 RVRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL---PSSIGL--- 519 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l---P~si~~--- 519 (667)
.++++++|.+.+|.+..++. ...+++|++|++++|... ..+|...|.++++|++|++++|.+..+ |..++.
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR-LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC-CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc-cccchhhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence 34556666666665544422 114555555555555443 334443334555555555555544433 334444
Q ss_pred ---------------------CCcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCC-CCcCCCCCC
Q 038110 520 ---------------------LTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPR-GGLFFEKPE 576 (667)
Q Consensus 520 ---------------------L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~ 576 (667)
+++|++|++++ .+...+ ....+.++++|++|++++|.+...++ .+..+++|+
T Consensus 378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-----AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT-----TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc-----cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 44455555444 332221 01348899999999999999877654 467899999
Q ss_pred eeEEEecCccC--CC--cccccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccE
Q 038110 577 RYKILTGHRWS--RG--FYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKY 652 (667)
Q Consensus 577 ~l~~~~~~~~~--~~--~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~ 652 (667)
.|++..+.-.. ++ ........++.+.++.+......+.....+++|+.|+|++| .-....|..+ ..+++| .
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l--~~l~~L-~ 527 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN--RLTSSSIEAL--SHLKGI-Y 527 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCGGGGGGG--TTCCSC-E
T ss_pred EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC--ccCcCChhHh--Cccccc-E
Confidence 99887554221 11 22334566888888887666655444456689999999999 5455567788 889999 9
Q ss_pred EEeecCCCCe
Q 038110 653 LQIEGYRGPQ 662 (667)
Q Consensus 653 L~l~~~~~l~ 662 (667)
|++++|.-..
T Consensus 528 L~L~~N~l~~ 537 (606)
T 3t6q_A 528 LNLASNHISI 537 (606)
T ss_dssp EECCSSCCCC
T ss_pred EECcCCcccc
Confidence 9999997543
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=142.27 Aligned_cols=198 Identities=11% Similarity=0.054 Sum_probs=132.9
Q ss_pred ccceeEEEEeccCccc-cCCC---CCCCCccEEEccCCCCcccccc---HHHHhCCCCCcEEEcCCCCCccCC-ccccCC
Q 038110 449 VRHCTSIVILDVKTYV-LPEV---MECPQLKLFSMPAEKNSFFAIP---HNLFRSMLQVRVLDLTDMNLLSLP-SSIGLL 520 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~-l~~~---~~~~~Lr~L~l~~~~~~~~~lp---~~~~~~l~~Lr~L~L~~~~i~~lP-~si~~L 520 (667)
..+++.|++.+|.+.. .|.. ..+++|++|++++|... ...| ...+..+++|++|+|++|.+..+| ..++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA-TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS-STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc-chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3458888888887753 3332 45788888888888764 3333 222357888888888888888664 568888
Q ss_pred CcccEEecCC-cccc---cCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC----CcCCCCCCeeEEEecCccCC-Cc-
Q 038110 521 TNLHTLCLYG-GVGV---VDGVKNASLEELKHFPNLTSLELEVNDANTLPRG----GLFFEKPERYKILTGHRWSR-GF- 590 (667)
Q Consensus 521 ~~L~~L~L~~-~l~~---LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~----~~~l~~L~~l~~~~~~~~~~-~~- 590 (667)
++|++|+|++ .+.. +|. ...++++++|++|++++|+++.+|.. +..+++|+.|+++.+.-... +.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMA-----ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHT-----TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred CCCCEEECCCCCCccchhhhH-----HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 8888888888 3322 320 02236788888888888888766653 24678888887775553322 21
Q ss_pred cccc--ccccceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCC
Q 038110 591 YRSS--NKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 591 ~~~~--~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
+... ...++.+.++.+.....+..+ .++|+.|+|++| .+..+|. + ..+++|+.|++++|+-.
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N---~l~~~~~-~--~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSN---RLNRAPQ-P--DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSC---CCCSCCC-T--TSCCCCSCEECSSTTTS
T ss_pred HHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCC---cCCCCch-h--hhCCCccEEECcCCCCC
Confidence 2222 146777777776555444333 279999999999 5555554 4 78899999999999754
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.42 E-value=5.6e-13 Score=152.41 Aligned_cols=123 Identities=17% Similarity=0.151 Sum_probs=61.7
Q ss_pred ceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-CccccCCCcccEEe
Q 038110 451 HCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLC 527 (667)
Q Consensus 451 ~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L~~L~ 527 (667)
+++.|.+.+|.+..++.. ..+++|+.|++++|... ..+|...|.++++|++|++++|.+..+ |..+..+++|++|+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE-EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc-cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 455555555555443221 14556666666666553 344443445666666666666655433 33444455555555
Q ss_pred cCC----cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEE
Q 038110 528 LYG----GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKIL 581 (667)
Q Consensus 528 L~~----~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~ 581 (667)
+++ .+..+| ..++++++|++|++++|.+..+|+. +..+++|+.|++.
T Consensus 461 l~~n~l~~~~~~p-------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls 512 (680)
T 1ziw_A 461 LRRVALKNVDSSP-------SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512 (680)
T ss_dssp CTTSCCBCTTCSS-------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred hccccccccccCC-------cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCC
Confidence 544 123334 4455555555555555555555543 3345555555544
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=6.3e-15 Score=151.71 Aligned_cols=175 Identities=14% Similarity=0.127 Sum_probs=88.4
Q ss_pred CCCccEEEccCCCCccccccHHHH-hCCCCCcEEEcCCCCCccCCccccCC-----CcccEEecCC-cccccCCCCccCh
Q 038110 471 CPQLKLFSMPAEKNSFFAIPHNLF-RSMLQVRVLDLTDMNLLSLPSSIGLL-----TNLHTLCLYG-GVGVVDGVKNASL 543 (667)
Q Consensus 471 ~~~Lr~L~l~~~~~~~~~lp~~~~-~~l~~Lr~L~L~~~~i~~lP~si~~L-----~~L~~L~L~~-~l~~LP~~~~~~~ 543 (667)
+++|++|++++|... ..+|..+| ..+++|++|+|++|.++.+|..++.+ ++|++|+|++ .+..+|.
T Consensus 94 l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~------ 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC------ 166 (312)
T ss_dssp TSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT------
T ss_pred cCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH------
Confidence 556666666666553 34555433 55666666666666666556555555 5666666665 4444442
Q ss_pred hhhcCCCCCCeEEeecCCCCC---CCCCC--cCCCCCCeeEEEecCccCCCccc----ccccccceEEeecCccccch-H
Q 038110 544 EELKHFPNLTSLELEVNDANT---LPRGG--LFFEKPERYKILTGHRWSRGFYR----SSNKSYRSFRIDLDANVRLK-D 613 (667)
Q Consensus 544 ~~l~~L~~L~~L~l~~~~l~~---lP~~~--~~l~~L~~l~~~~~~~~~~~~~~----~~~~~l~~l~l~~~~~~~~~-~ 613 (667)
..++++++|++|++++|.+.. +|..+ ..+++|+.|++..+.-..++... .....++.+.++.+...... .
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 455666666666666665432 22222 45556666655433221111111 11234555555554333221 1
Q ss_pred HHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCC
Q 038110 614 RLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 614 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
.....+++|+.|+|++| .+..+|.++ . ++|+.|++++|.
T Consensus 247 ~~~~~l~~L~~L~Ls~N---~l~~ip~~~--~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFT---GLKQVPKGL--P--AKLSVLDLSYNR 285 (312)
T ss_dssp SCCCCCTTCCEEECTTS---CCSSCCSSC--C--SEEEEEECCSSC
T ss_pred hhhhhcCCCCEEECCCC---ccChhhhhc--c--CCceEEECCCCC
Confidence 11112346666666666 344555555 2 566666666664
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.42 E-value=4.5e-13 Score=149.75 Aligned_cols=200 Identities=11% Similarity=0.035 Sum_probs=146.8
Q ss_pred cccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccc---cHHHHhCCCCCcEEEcCCCCCccCCccccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAI---PHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~l---p~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~ 524 (667)
..++++.|.+.+|.+........+++|+.|++++|... .+ |..+ .++++|++|++++|.+..+|..++.+++|+
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~ 399 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS--FKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCB--EEEEEEHHH-HTCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred cccccCEEeCcCCccccccccccCCCCCEEeCcCCccC--ccccccccc-cccCccCEEECCCCccccccccccccCCCC
Confidence 44566666666665543333356788889998888763 33 5554 899999999999999998888899999999
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCC-CCCcCCCCCCeeEEEecCcc--CCCcccccccccce
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLP-RGGLFFEKPERYKILTGHRW--SRGFYRSSNKSYRS 600 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP-~~~~~l~~L~~l~~~~~~~~--~~~~~~~~~~~l~~ 600 (667)
+|++++ .+..++. ...+.++++|++|++++|.+...+ ..+..+++|+.|++..+... .++........++.
T Consensus 400 ~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 400 HLDFQHSNLKQMSE-----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp EEECTTSEEESCTT-----SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred EEEccCCccccccc-----hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 999998 6665540 036789999999999999877654 45678999999988755422 24433444567888
Q ss_pred EEeecCccccchHHHHHHhhhcceeeccccccccccccc-hhhhhccCCCccEEEeecCCC
Q 038110 601 FRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFV-NELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 601 l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~l~~L~~L~l~~~~~ 660 (667)
+.++.+......+.....+++|+.|+|++| .+..+| ..+ ..+++|+.|++++|+-
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~--~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASN---QLKSVPDGIF--DRLTSLQKIWLHTNPW 530 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSS---CCSCCCTTTT--TTCTTCCEEECCSSCB
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCC---cCCCCCHHHh--hcccCCcEEEecCCcc
Confidence 888886665554433445689999999999 444454 456 7899999999999863
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.41 E-value=1.2e-12 Score=148.13 Aligned_cols=201 Identities=15% Similarity=0.121 Sum_probs=132.8
Q ss_pred CCCccccccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-ccc
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIG 518 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~ 518 (667)
..|. ..+.++++|++++|.+..++.. ..+++|++|++++|.. ..+|++.|.++++|++|+|++|+++.+|. .|+
T Consensus 45 ~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 45 KIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred ccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 4442 3456889999999988888753 3788999999998876 67877777899999999999999988875 478
Q ss_pred CCCcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCC--CCCCcCCCCCCeeEEEecCccCCC--ccc-
Q 038110 519 LLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTL--PRGGLFFEKPERYKILTGHRWSRG--FYR- 592 (667)
Q Consensus 519 ~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~l--P~~~~~l~~L~~l~~~~~~~~~~~--~~~- 592 (667)
+|++|++|+|++ .+..+|. ..|++|++|++|++++|.+..+ |..+..+++|+.|++..+.-..+. .+.
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTT------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CCCCCCEEECCCCcCCCCCh------hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 899999999988 7888872 3588899999999999887654 455678888988887754422211 111
Q ss_pred --ccccccceEEeecCccccchHHHHHHhhhcceeeccccccccccc-cchhhhhccCCCccEEEee
Q 038110 593 --SSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKN-FVNELVKVGSSQLKYLQIE 656 (667)
Q Consensus 593 --~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~~~l~~L~~L~l~ 656 (667)
........+.++.+......+..... ..+..|.+.+| ..... .+..+ ..++.|+...+.
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n--~~~~~~~~~~~--~~l~~l~~~~l~ 257 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNN--FDSLNVMKTCI--QGLAGLEVHRLV 257 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESC--CSSHHHHHHHH--HTTTTCEEEEEE
T ss_pred hhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcc--cccccccchhh--cCCccccccccc
Confidence 11111223334433333333222222 35666777666 22222 23334 567777766554
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.41 E-value=1.2e-12 Score=146.26 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=92.9
Q ss_pred ccceeEEEEeccCccccCC--CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEE
Q 038110 449 VRHCTSIVILDVKTYVLPE--VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L 526 (667)
+++++.|++++|.+..++. ...+++|++|++++|.. ..+++..|.++++|++|+|++|.++.+|.. .+++|++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHL 126 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEE
Confidence 4789999999999888764 34789999999999977 556555569999999999999999999887 79999999
Q ss_pred ecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCC--CeeEEEe
Q 038110 527 CLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKP--ERYKILT 582 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L--~~l~~~~ 582 (667)
+|++ .+..+| .+..++++++|++|++++|.+... .+..+++| +.|++..
T Consensus 127 ~Ls~N~l~~l~-----~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 127 DLSFNDFDVLP-----VCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp ECCSSCCSBCC-----CCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEE
T ss_pred ECCCCCccccC-----chHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeec
Confidence 9998 666653 016788888888888888876542 22333444 5555443
No 82
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.8e-12 Score=124.78 Aligned_cols=159 Identities=19% Similarity=0.156 Sum_probs=103.9
Q ss_pred ccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcccE
Q 038110 449 VRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHT 525 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~~ 525 (667)
.++++.|++.+|.+..++.. ..+++|++|++++|.. ..+|...|.++++|++|+|++|.++.+|.. ++.+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 45677777777777666553 2677777777777765 466666567777777777777777766654 567777777
Q ss_pred EecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCcccccccccceEEe
Q 038110 526 LCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRI 603 (667)
Q Consensus 526 L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l 603 (667)
|++++ .+..+|. ..+.++++|++|++++|.+..+|.. +..+++|+.|++..+.
T Consensus 105 L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~------------------- 159 (208)
T 2o6s_A 105 LALNTNQLQSLPD------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP------------------- 159 (208)
T ss_dssp EECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-------------------
T ss_pred EEcCCCcCcccCH------hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-------------------
Confidence 77777 6666662 3357777777777777777777665 4566777777655321
Q ss_pred ecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCC
Q 038110 604 DLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQ 649 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~ 649 (667)
... .+++|+.|+++.| ...+.+|+++ +.++.
T Consensus 160 ----~~~-------~~~~l~~L~~~~n--~~~g~ip~~~--~~l~~ 190 (208)
T 2o6s_A 160 ----WDC-------TCPGIRYLSEWIN--KHSGVVRNSA--GSVAP 190 (208)
T ss_dssp ----BCC-------CTTTTHHHHHHHH--HCTTTBBCTT--SSBCT
T ss_pred ----eec-------CCCCHHHHHHHHH--hCCceeeccC--ccccC
Confidence 110 1246777777777 5556677777 44443
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=1.7e-12 Score=145.13 Aligned_cols=98 Identities=24% Similarity=0.330 Sum_probs=84.9
Q ss_pred cceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecC
Q 038110 450 RHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLY 529 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~ 529 (667)
++++.|.+.+|++..+|. .+++|++|++++|.. ..+|. .+++|++|+|++|.++.+|. .+.+|++|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l--~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQL--TSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCC--SCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcC--CcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC
Confidence 799999999999998887 689999999999987 67886 78999999999999999998 57899999999
Q ss_pred C-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC
Q 038110 530 G-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG 568 (667)
Q Consensus 530 ~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~ 568 (667)
+ .+..+| .. +++|++|++++|.+..+|..
T Consensus 130 ~N~l~~lp-------~~---l~~L~~L~Ls~N~l~~l~~~ 159 (622)
T 3g06_A 130 GNQLTSLP-------VL---PPGLQELSVSDNQLASLPAL 159 (622)
T ss_dssp SSCCSCCC-------CC---CTTCCEEECCSSCCSCCCCC
T ss_pred CCCCCcCC-------CC---CCCCCEEECcCCcCCCcCCc
Confidence 9 888888 32 47788888888887777654
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=152.86 Aligned_cols=192 Identities=13% Similarity=0.059 Sum_probs=145.3
Q ss_pred eEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCC-CccC-CccccCCCcccEEecCC
Q 038110 453 TSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMN-LLSL-PSSIGLLTNLHTLCLYG 530 (667)
Q Consensus 453 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~-i~~l-P~si~~L~~L~~L~L~~ 530 (667)
+..+.+++++..+|. ..++|++|++++|.. ..+++..|.++++|++|+|++|. +..+ |..|++|++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 456667788889987 568999999999987 45544445999999999999994 5577 78899999999999999
Q ss_pred -ccccc-CCCCccChhhhcCCCCCCeEEeecCCCCC-CCCC--CcCCCCCCeeEEEecCccCCC--cccccccccceEEe
Q 038110 531 -GVGVV-DGVKNASLEELKHFPNLTSLELEVNDANT-LPRG--GLFFEKPERYKILTGHRWSRG--FYRSSNKSYRSFRI 603 (667)
Q Consensus 531 -~l~~L-P~~~~~~~~~l~~L~~L~~L~l~~~~l~~-lP~~--~~~l~~L~~l~~~~~~~~~~~--~~~~~~~~l~~l~l 603 (667)
.+..+ | ..|++|++|++|++++|.+.. +|.. +.++++|+.|+++.+....+. ........++.|.+
T Consensus 83 N~l~~~~p-------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 83 SKIYFLHP-------DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CCCCEECT-------TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred CcCcccCH-------hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 77776 6 889999999999999999875 5654 779999999999876643332 22344567888899
Q ss_pred ecCccccchHHHHHHh--hhcceeeccccccccccccchhhhhccCC------CccEEEeecCC
Q 038110 604 DLDANVRLKDRLVVQL--RGIEELSLAGLLDQDIKNFVNELVKVGSS------QLKYLQIEGYR 659 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~l~~~~l~------~L~~L~l~~~~ 659 (667)
+.+......+.....+ ++|+.|+|++| ......|..+ ..++ +|+.|++++|.
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n--~l~~~~~~~~--~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAAN--SLYSRVSVDW--GKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCS--BSCCCCCCCC--CSSSCTTTTCCBSEEBCSSCC
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCC--ccccccccch--hhcCCccccCceeEEecCCCc
Confidence 8865544322222223 69999999999 4444455544 3333 39999999883
No 85
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=1.5e-12 Score=126.65 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=97.2
Q ss_pred eEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-CccccCCCcccEEecCC-
Q 038110 453 TSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYG- 530 (667)
Q Consensus 453 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L~~L~L~~- 530 (667)
+.+...++.+..+|... .++|+.|++++|.. ..+|...|.++++|++|+|++|.+..+ |..+.++.+|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45677777788887644 37899999998877 567766668899999999999998876 77889999999999988
Q ss_pred cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecC
Q 038110 531 GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGH 584 (667)
Q Consensus 531 ~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~ 584 (667)
.+..+|. ..+.++++|++|++++|.+..+|.. +..+++|+.|++..+.
T Consensus 91 ~l~~l~~------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 91 KITELPK------SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCH------hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 7888882 3468899999999999988888654 6678888888776443
No 86
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=1.9e-12 Score=126.64 Aligned_cols=124 Identities=22% Similarity=0.266 Sum_probs=79.9
Q ss_pred ccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcccE
Q 038110 449 VRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHT 525 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~~ 525 (667)
+.+++.|.+.+|.+..++.. ..+++|++|++++|.. ..+|...|.++++|++|+|++|.++.+|.. ++.+.+|++
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l--~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC--CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 35667777777666655332 2566777777776665 556655556677777777777776666544 466677777
Q ss_pred EecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEE
Q 038110 526 LCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKIL 581 (667)
Q Consensus 526 L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~ 581 (667)
|+|++ .+..+| ..+.++++|++|++++|.+..+|.. +..+++|+.|.+.
T Consensus 117 L~Ls~N~l~~lp-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 117 LFMCCNKLTELP-------RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp EECCSSCCCSCC-------TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred EeccCCcccccC-------cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 77766 666666 6666677777777777766666654 4456666666554
No 87
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=2.9e-13 Score=135.50 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=62.5
Q ss_pred cccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEe
Q 038110 448 RVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLC 527 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~ 527 (667)
.+++++.|++.+|.+..++....+++|++|++++|.. ..+|. |.++++|++|+|++|.++.+|.... .+|++|+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 4455555555555555555433555555555555544 34444 3555555555555555555554322 5555555
Q ss_pred cCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEE
Q 038110 528 LYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKIL 581 (667)
Q Consensus 528 L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~ 581 (667)
+++ .+..+| .++++++|++|++++|+++.+| .+..+++|+.|++.
T Consensus 113 L~~N~l~~~~--------~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 113 LDNNELRDTD--------SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLH 158 (263)
T ss_dssp CCSSCCSBSG--------GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECT
T ss_pred ccCCccCCCh--------hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECC
Confidence 555 444443 3555555555555555555554 33445555555443
No 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=2.3e-12 Score=125.18 Aligned_cols=122 Identities=11% Similarity=0.174 Sum_probs=99.2
Q ss_pred eEEEEeccCccccCCCCCCCCccEEEccCCCCccccc-cHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccEEecCC
Q 038110 453 TSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAI-PHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYG 530 (667)
Q Consensus 453 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~l-p~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~ 530 (667)
+.+++++|.+..+|... .+.++.|++++|.. ..+ |..+|.++++|++|+|++|.++.+|. .++++.+|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcC--CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888888888643 45678999999987 445 55556999999999999999998765 799999999999999
Q ss_pred -cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCC-CCcCCCCCCeeEEEec
Q 038110 531 -GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPR-GGLFFEKPERYKILTG 583 (667)
Q Consensus 531 -~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~l~~~~~ 583 (667)
.+..+|. ..|+++++|++|++++|.+..+++ .+..+++|+.|++..+
T Consensus 91 N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 91 NRLENVQH------KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp SCCCCCCG------GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred CccCccCH------hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 7888872 458899999999999999888854 4678888888877633
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.36 E-value=1.5e-13 Score=142.71 Aligned_cols=195 Identities=15% Similarity=0.095 Sum_probs=133.6
Q ss_pred cceeEEEEeccCccccC-CCCCCCCccEEEccCCCCcccc-ccHHHHhCCCCCcEEEcCCCCCc-cCCccccCCCcccEE
Q 038110 450 RHCTSIVILDVKTYVLP-EVMECPQLKLFSMPAEKNSFFA-IPHNLFRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTL 526 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~~~~~~-lp~~~~~~l~~Lr~L~L~~~~i~-~lP~si~~L~~L~~L 526 (667)
.+++.+.+.+|.+...+ ....+++|++|++++|... .. +|.. +.++++|++|+|++|.+. ..|..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-VSTLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC-HHHHHHH-HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcC-HHHHHHH-HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 57788888888775443 3347888999999888753 23 5554 488899999999998887 578888888899999
Q ss_pred ecCC--ccc--ccCCCCccChhhhcCCCCCCeEEeecC-CCCC--CCCCCcCCC-CCCeeEEEecCc----cCCCccccc
Q 038110 527 CLYG--GVG--VVDGVKNASLEELKHFPNLTSLELEVN-DANT--LPRGGLFFE-KPERYKILTGHR----WSRGFYRSS 594 (667)
Q Consensus 527 ~L~~--~l~--~LP~~~~~~~~~l~~L~~L~~L~l~~~-~l~~--lP~~~~~l~-~L~~l~~~~~~~----~~~~~~~~~ 594 (667)
++++ .+. .+| ..+.++++|++|++++| .+.. +|..+..++ +|+.|++..+.. ..++.....
T Consensus 148 ~L~~~~~l~~~~l~-------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 148 NLSGCSGFSEFALQ-------TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp ECTTCBSCCHHHHH-------HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred ECCCCCCCCHHHHH-------HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 9987 344 366 66788888999999888 7764 555556788 888888765421 112222233
Q ss_pred ccccceEEeecCc-ccc-chHHHHHHhhhcceeecccccccccc-ccchhhhhccCCCccEEEeecC
Q 038110 595 NKSYRSFRIDLDA-NVR-LKDRLVVQLRGIEELSLAGLLDQDIK-NFVNELVKVGSSQLKYLQIEGY 658 (667)
Q Consensus 595 ~~~l~~l~l~~~~-~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~l~~~~l~~L~~L~l~~~ 658 (667)
...++.+.++.+. ... ....+ ..+++|+.|+|++| .... .....+ ..+++|+.|++++|
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~--~~~~~~~~~~l--~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRC--YDIIPETLLEL--GEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTC--TTCCGGGGGGG--GGCTTCCEEECTTS
T ss_pred CCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCC--CCCCHHHHHHH--hcCCCCCEEeccCc
Confidence 4567777777754 222 22333 34578999999888 3221 112245 67889999999888
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=6.1e-12 Score=124.93 Aligned_cols=153 Identities=15% Similarity=0.165 Sum_probs=122.1
Q ss_pred cccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~ 524 (667)
.+.+++.|.+.+|.+..++.. ..+++|++|++++|.. ..++...|.++++|++|+|++|.++.+|. .++.+.+|+
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 346899999999999877653 3789999999999987 56666667999999999999999998875 578999999
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCc-ccccccccceE
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGF-YRSSNKSYRSF 601 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~l~~l 601 (667)
+|+|++ .+..+|. ..++++++|++|++++|.+..+|.. +..+++|+.|++..+.-..++. .......++.+
T Consensus 111 ~L~L~~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 111 KLYLGGNQLKSLPS------GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp EEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred EEEcCCCcCCCcCh------hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 999999 8888882 3468999999999999999999985 6789999999888665333332 22334456677
Q ss_pred EeecCcc
Q 038110 602 RIDLDAN 608 (667)
Q Consensus 602 ~l~~~~~ 608 (667)
.+.++..
T Consensus 185 ~l~~N~~ 191 (251)
T 3m19_A 185 TLFGNQF 191 (251)
T ss_dssp ECCSCCB
T ss_pred EeeCCce
Confidence 7776443
No 91
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.35 E-value=1.9e-12 Score=146.38 Aligned_cols=188 Identities=14% Similarity=0.108 Sum_probs=132.9
Q ss_pred eccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccEEecCC-ccccc
Q 038110 458 LDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYG-GVGVV 535 (667)
Q Consensus 458 ~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~-~l~~L 535 (667)
++.++..+|... .+++++|++++|.. ..+|+..|.++++|++|+|++|.|+.+|+ +|++|++|++|+|++ .+..+
T Consensus 39 ~~~~l~~vP~~l-p~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCSSCCSSS-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcCccCCCC-CcCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 334567777643 25789999999887 67877667899999999999999988865 588899999999998 88888
Q ss_pred CCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccC--CCcccccccccceEEeecCccccch
Q 038110 536 DGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWS--RGFYRSSNKSYRSFRIDLDANVRLK 612 (667)
Q Consensus 536 P~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~ 612 (667)
|. ..|++|++|++|++++|++..+|.. +.++++|+.|++..+.-.. ++........++.+.++.+......
T Consensus 116 ~~------~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 116 AL------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CG------GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CH------HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 82 4578899999999999998888875 6788899999887655322 3333344556778888876555544
Q ss_pred HHHHHHhhhcc----eeeccccccccccccchhhhhccCCCccEEEeecCC
Q 038110 613 DRLVVQLRGIE----ELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 613 ~~~~~~l~~L~----~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
+.....++++. .++++.| ....++... .....+..|.+.+|.
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n---~l~~i~~~~--~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLN---PMNFIQPGA--FKEIRLHKLTLRNNF 235 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTC---CCCEECTTT--TTTCEEEEEEEESCC
T ss_pred cccccchhhhhhhhhhhhcccC---cccccCccc--ccchhhhhhhhhccc
Confidence 33333334333 4666666 445555555 445566777777664
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=4.6e-12 Score=120.80 Aligned_cols=125 Identities=12% Similarity=0.131 Sum_probs=106.9
Q ss_pred ccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCcc-CCccccCCCcccE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLS-LPSSIGLLTNLHT 525 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lP~si~~L~~L~~ 525 (667)
..+++++.|++.+|.+..+|....+++|++|++++|.. ..++ . +..+++|++|++++|.++. .|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~--~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC--SCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC--Ccch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678999999999999888666899999999999954 4444 4 4899999999999999985 7889999999999
Q ss_pred EecCC-cccc-cCCCCccChhhhcCCCCCCeEEeecCC-CCCCCCCCcCCCCCCeeEEEec
Q 038110 526 LCLYG-GVGV-VDGVKNASLEELKHFPNLTSLELEVND-ANTLPRGGLFFEKPERYKILTG 583 (667)
Q Consensus 526 L~L~~-~l~~-LP~~~~~~~~~l~~L~~L~~L~l~~~~-l~~lP~~~~~l~~L~~l~~~~~ 583 (667)
|++++ .+.. .| ..++++++|++|++++|. +..+| .+..+++|+.|++..+
T Consensus 117 L~Ls~n~i~~~~~-------~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 117 LDISHSAHDDSIL-------TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EECCSSBCBGGGH-------HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred EEecCCccCcHhH-------HHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 99999 6654 56 789999999999999998 98888 5678999999987643
No 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.34 E-value=5.7e-12 Score=140.61 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=133.1
Q ss_pred CCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCcc-CCccccCCCcccEEecCC-cccccCCCCccChhhhcCC
Q 038110 472 PQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLS-LPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHF 549 (667)
Q Consensus 472 ~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L 549 (667)
.+|++|.+++|... .++ ++..+++|++|++++|.+.. +|..++++++|++|++++ .+..+|. .+..++++
T Consensus 331 ~~L~~L~l~~n~~~--~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~l 402 (562)
T 3a79_B 331 MNIKMLSISDTPFI--HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK----VALMTKNM 402 (562)
T ss_dssp CCCSEEEEESSCCC--CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH----HHHTTTTC
T ss_pred CcceEEEccCCCcc--ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc----chhhhcCC
Confidence 45777777777652 222 12688999999999999985 789999999999999999 6665430 00568999
Q ss_pred CCCCeEEeecCCCCC-CCCC-CcCCCCCCeeEEEecCccCCCcccccccccceEEeecCccccchHHHHHHhhhcceeec
Q 038110 550 PNLTSLELEVNDANT-LPRG-GLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSL 627 (667)
Q Consensus 550 ~~L~~L~l~~~~l~~-lP~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L 627 (667)
++|++|++++|.+.. +|.+ +..+++|+.|++..+.-.. .........++.+.++.+.....+..+. .+++|+.|+|
T Consensus 403 ~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L 480 (562)
T 3a79_B 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-SVFRCLPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNV 480 (562)
T ss_dssp TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-GGGSSCCTTCSEEECCSSCCCCCCTTTT-SSCCCSEEEC
T ss_pred CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-chhhhhcCcCCEEECCCCcCcccChhhc-CCCCCCEEEC
Confidence 999999999999887 8886 5688999999887554211 1111222578889998877666666555 6689999999
Q ss_pred cccccccccccchh-hhhccCCCccEEEeecCCC
Q 038110 628 AGLLDQDIKNFVNE-LVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 628 ~~~~~~~~~~~~~~-l~~~~l~~L~~L~l~~~~~ 660 (667)
++| .+..+|.. + ..+++|+.|++++|+-
T Consensus 481 ~~N---~l~~l~~~~~--~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 481 ASN---QLKSVPDGVF--DRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CSS---CCCCCCTTST--TTCTTCCCEECCSCCB
T ss_pred CCC---CCCCCCHHHH--hcCCCCCEEEecCCCc
Confidence 999 66678887 6 8899999999999973
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.34 E-value=1.4e-12 Score=136.38 Aligned_cols=200 Identities=14% Similarity=0.079 Sum_probs=110.8
Q ss_pred ccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcE-EEcCCCCCccC-CccccCCCccc
Q 038110 449 VRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRV-LDLTDMNLLSL-PSSIGLLTNLH 524 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~-L~L~~~~i~~l-P~si~~L~~L~ 524 (667)
+.+++.|.+++|++..+|.. ..+++|++|++++|... ..+|...|.++++|.. +.+++|++..+ |..+..|++|+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 56788888888888888763 37888888888888764 5677777788877664 66667788877 45678888888
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecC-CCCCCCCC-CcCC-CCCCeeEEEecCccCCCcccccccccce
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVN-DANTLPRG-GLFF-EKPERYKILTGHRWSRGFYRSSNKSYRS 600 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~-~l~~lP~~-~~~l-~~L~~l~~~~~~~~~~~~~~~~~~~l~~ 600 (667)
+|++++ .+..+|. ..+....++..|++.++ .+..+|.. +..+ ..++.|++..+.-..++........+..
T Consensus 108 ~L~l~~n~l~~~~~------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~ 181 (350)
T 4ay9_X 108 YLLISNTGIKHLPD------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181 (350)
T ss_dssp EEEEEEECCSSCCC------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEE
T ss_pred cccccccccccCCc------hhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhH
Confidence 888887 6666662 22333444555555443 35555543 2222 2344444432222222111111112233
Q ss_pred EEeec-CccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCCCe
Q 038110 601 FRIDL-DANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRGPQ 662 (667)
Q Consensus 601 l~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~ 662 (667)
+.+.. +.....++.....+++|+.|+|++| .+..+|... +.+|+.|.+.++..++
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N---~l~~lp~~~----~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRT---RIHSLPSYG----LENLKKLRARSTYNLK 237 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTS---CCCCCCSSS----CTTCCEEECTTCTTCC
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCC---CcCccChhh----hccchHhhhccCCCcC
Confidence 33332 2333333333344456666666665 344444332 4455555555444443
No 95
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.34 E-value=7.9e-12 Score=135.24 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=98.2
Q ss_pred cceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecC
Q 038110 450 RHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLY 529 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~ 529 (667)
.+++.|++.+|.+..++.. .++|++|++++|.. ..+|. |+++++|++|++++|.++.+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l--~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQL--EKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCC--SSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECC
T ss_pred CCCcEEECCCCccCcccCC--CCCCCEEECcCCCC--CCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECc
Confidence 4555555555555444332 14566666666554 34552 366666666666666666655543 356666666
Q ss_pred C-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeecCcc
Q 038110 530 G-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDAN 608 (667)
Q Consensus 530 ~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 608 (667)
+ .+..+| +++++++|++|++++|.+..+|.. ..+|+.|++..+.-..++.+ .....++.+.++.+..
T Consensus 182 ~n~l~~l~--------~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~~-~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 182 NNQLEELP--------ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPEL-QNLPFLTTIYADNNLL 249 (454)
T ss_dssp SSCCSSCC--------CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCCC-TTCTTCCEEECCSSCC
T ss_pred CCcCCcCc--------cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCccccc-CCCCCCCEEECCCCcC
Confidence 5 555555 366777777777777776666654 24666776654443334332 2234456666666444
Q ss_pred ccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCC
Q 038110 609 VRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYR 659 (667)
Q Consensus 609 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 659 (667)
...+. .+++|+.|++++| .+..+|.. +++|+.|++++|.
T Consensus 250 ~~l~~----~~~~L~~L~l~~N---~l~~l~~~-----~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 250 KTLPD----LPPSLEALNVRDN---YLTDLPEL-----PQSLTFLDVSENI 288 (454)
T ss_dssp SSCCS----CCTTCCEEECCSS---CCSCCCCC-----CTTCCEEECCSSC
T ss_pred Ccccc----cccccCEEECCCC---cccccCcc-----cCcCCEEECcCCc
Confidence 33222 2357777777777 33334432 3566666666664
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=8.6e-12 Score=121.98 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=117.9
Q ss_pred ceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcccEEecC
Q 038110 451 HCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHTLCLY 529 (667)
Q Consensus 451 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~~L~L~ 529 (667)
....++..++.+..+|... .++|++|++++|.. ..+++..|.++++|++|+|++|.+..+|.. +..+.+|++|+|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4456788888888888754 48999999999988 456555569999999999999999999865 6899999999999
Q ss_pred C-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCc-ccccccccceEEeecCc
Q 038110 530 G-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGF-YRSSNKSYRSFRIDLDA 607 (667)
Q Consensus 530 ~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~ 607 (667)
+ .+..+|. ..+..+++|++|++++|.+..+|..+..+++|+.|++..+.-..++. .......++.+.+.++.
T Consensus 97 ~N~l~~l~~------~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 97 TNQLTVLPS------AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SSCCCCCCT------TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCcCCccCh------hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9 8888882 45789999999999999999999998999999999988665433332 12233455666666543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.33 E-value=3.3e-12 Score=133.54 Aligned_cols=193 Identities=13% Similarity=0.169 Sum_probs=143.1
Q ss_pred eEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCc-cccCCCcccEE-ecC
Q 038110 453 TSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPS-SIGLLTNLHTL-CLY 529 (667)
Q Consensus 453 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~-si~~L~~L~~L-~L~ 529 (667)
+.+..+++++.++|... .++++.|++++|.. ..+|.+.|.++++|++|+|++|.+. .+|. .|.+|.+|+.+ .+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45677778888888755 57899999999987 7899887899999999999999975 5665 57889998765 444
Q ss_pred C-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCc-----ccccccccceEE
Q 038110 530 G-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGF-----YRSSNKSYRSFR 602 (667)
Q Consensus 530 ~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~-----~~~~~~~l~~l~ 602 (667)
. .+..+|. ..|..|++|++|++++|.+..+|.. +.....+..+.+.. ...+.. +......+..+.
T Consensus 89 ~N~l~~l~~------~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~--~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 89 ANNLLYINP------EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD--NINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp ETTCCEECT------TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES--CTTCCEECTTSSTTSBSSCEEEE
T ss_pred CCcccccCc------hhhhhccccccccccccccccCCchhhcccchhhhhhhcc--ccccccccccchhhcchhhhhhc
Confidence 4 7888862 6789999999999999999999876 23444555665542 222222 223334566677
Q ss_pred eecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 603 IDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 603 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
++.+.....+...... .+|+.|.+.++ +.++.+|.... ..+++|+.|++++|.-
T Consensus 161 L~~N~i~~i~~~~f~~-~~L~~l~l~~~--n~l~~i~~~~f-~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 161 LNKNGIQEIHNSAFNG-TQLDELNLSDN--NNLEELPNDVF-HGASGPVILDISRTRI 214 (350)
T ss_dssp CCSSCCCEECTTSSTT-EEEEEEECTTC--TTCCCCCTTTT-TTEECCSEEECTTSCC
T ss_pred cccccccCCChhhccc-cchhHHhhccC--CcccCCCHHHh-ccCcccchhhcCCCCc
Confidence 7776665555444333 58999999876 57788886532 7899999999999953
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=6.8e-12 Score=121.90 Aligned_cols=129 Identities=17% Similarity=0.198 Sum_probs=110.6
Q ss_pred cccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~ 524 (667)
.+.+++.|.+.+|.+..++.. ..+++|+.|++++|.. ..+++..|.++++|++|+|++|.++.+|.. +..+.+|+
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ 107 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC--CEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC--CCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCC
Confidence 347899999999999888753 3789999999999987 456444469999999999999999999886 58899999
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecC
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGH 584 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~ 584 (667)
+|+|++ .+..+|. ..|..+++|++|++++|.+..+|.. +..+++|+.|++..+.
T Consensus 108 ~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 108 LLLLNANKINCLRV------DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCEeCH------HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 999999 7887752 6799999999999999999999886 6688999999877444
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=7.7e-12 Score=131.31 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=84.0
Q ss_pred ccceeEEEEeccCccccCCCC---CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCccc
Q 038110 449 VRHCTSIVILDVKTYVLPEVM---ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLH 524 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~ 524 (667)
+..++.|++++|.+..++... .+++|++|++++|.. ..++...|.++++|++|+|++|.++.+|. .+..|.+|+
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 455677777777776665432 567777777777766 45555545777777777777777776654 466777777
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCC----cCCCCCCeeEEEecC
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGG----LFFEKPERYKILTGH 584 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~----~~l~~L~~l~~~~~~ 584 (667)
+|+|++ .+..++. ..|.++++|++|++++|.+..+|..+ ..+++|+.|++..+.
T Consensus 116 ~L~L~~N~i~~~~~------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 116 VLLLYNNHIVVVDR------NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp EEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred EEECCCCcccEECH------HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 777777 5655531 56777777777777777777777653 346667776665433
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.31 E-value=1.5e-11 Score=133.14 Aligned_cols=156 Identities=12% Similarity=0.047 Sum_probs=120.1
Q ss_pred cceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecC
Q 038110 450 RHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLY 529 (667)
Q Consensus 450 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~ 529 (667)
++++.|.+.+|.+..+|....+++|++|++++|.. ..+|.. +.+|++|++++|.++.+| +++++++|++|+++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l--~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL--KKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC--SCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcC--cccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 68999999999888888666889999999999876 457653 358999999999998888 68999999999998
Q ss_pred C-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccceEEeecCcc
Q 038110 530 G-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRSFRIDLDAN 608 (667)
Q Consensus 530 ~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 608 (667)
+ .+..+| .. .++|++|++++|.+..+|. +..+++|+.|++..+.-.. ++.....++.+.++.+..
T Consensus 204 ~N~l~~l~-------~~---~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~---l~~~~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 204 NNSLKKLP-------DL---PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT---LPDLPPSLEALNVRDNYL 269 (454)
T ss_dssp SSCCSSCC-------CC---CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS---CCSCCTTCCEEECCSSCC
T ss_pred CCcCCcCC-------CC---cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc---ccccccccCEEECCCCcc
Confidence 8 777777 32 2588999999999888885 6788899999887544333 334446777888877554
Q ss_pred ccchHHHHHHhhhcceeecccc
Q 038110 609 VRLKDRLVVQLRGIEELSLAGL 630 (667)
Q Consensus 609 ~~~~~~~~~~l~~L~~L~L~~~ 630 (667)
...+. .+++|+.|++++|
T Consensus 270 ~~l~~----~~~~L~~L~ls~N 287 (454)
T 1jl5_A 270 TDLPE----LPQSLTFLDVSEN 287 (454)
T ss_dssp SCCCC----CCTTCCEEECCSS
T ss_pred cccCc----ccCcCCEEECcCC
Confidence 44332 2368899999888
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.31 E-value=5.9e-12 Score=139.15 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=105.7
Q ss_pred CCCccccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCC
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLT 521 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~ 521 (667)
.+| ..+++++.|++++|.+..+|. . ..+|++|++++|.. ..+|. .+++|++|+|++|.++.+|. .++
T Consensus 94 ~ip--~~l~~L~~L~Ls~N~l~~ip~-l-~~~L~~L~Ls~N~l--~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~ 160 (571)
T 3cvr_A 94 SLP--ELPASLEYLDACDNRLSTLPE-L-PASLKHLDVDNNQL--TMLPE----LPALLEYINADNNQLTMLPE---LPT 160 (571)
T ss_dssp CCC--CCCTTCCEEECCSSCCSCCCC-C-CTTCCEEECCSSCC--SCCCC----CCTTCCEEECCSSCCSCCCC---CCT
T ss_pred ccc--cccCCCCEEEccCCCCCCcch-h-hcCCCEEECCCCcC--CCCCC----cCccccEEeCCCCccCcCCC---cCC
Confidence 445 557899999999999988887 3 23999999999987 55887 68999999999999999998 578
Q ss_pred cccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCC-------CeeEEEecCccCCCcccc
Q 038110 522 NLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKP-------ERYKILTGHRWSRGFYRS 593 (667)
Q Consensus 522 ~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L-------~~l~~~~~~~~~~~~~~~ 593 (667)
+|++|+|++ .+..+| . |+ ++|++|++++|.++.+|. +.. +| +.|++..|....++....
T Consensus 161 ~L~~L~Ls~N~L~~lp-------~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~ 227 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFLP-------E-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENIL 227 (571)
T ss_dssp TCCEEECCSSCCSCCC-------C-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGG
T ss_pred CcCEEECCCCCCCCcc-------h-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHh
Confidence 999999999 888899 5 65 899999999999999998 553 55 777666444333333111
Q ss_pred cccccceEEeecCc
Q 038110 594 SNKSYRSFRIDLDA 607 (667)
Q Consensus 594 ~~~~l~~l~l~~~~ 607 (667)
....++.+.|++|.
T Consensus 228 ~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 228 SLDPTCTIILEDNP 241 (571)
T ss_dssp GSCTTEEEECCSSS
T ss_pred cCCCCCEEEeeCCc
Confidence 23334444444433
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=1e-12 Score=139.48 Aligned_cols=204 Identities=14% Similarity=0.121 Sum_probs=122.7
Q ss_pred cccceeEEEEeccCcccc----CCC--------CCCCCccEEEccCCCCccc----cccHHHHhCCCCCcEEEcCCCCCc
Q 038110 448 RVRHCTSIVILDVKTYVL----PEV--------MECPQLKLFSMPAEKNSFF----AIPHNLFRSMLQVRVLDLTDMNLL 511 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l----~~~--------~~~~~Lr~L~l~~~~~~~~----~lp~~~~~~l~~Lr~L~L~~~~i~ 511 (667)
..+++++|++.+|.+..+ |.. ..+++|++|++++|... . .+|..+ .++++|++|+|++|.+.
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l-~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-PTAQEPLIDFL-SKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC-TTTHHHHHHHH-HHCTTCCEEECCSSCCH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC-HHHHHHHHHHH-HhCCCCCEEECcCCCCC
Confidence 345677777776644332 211 25677777777777653 2 245554 77777777777777765
Q ss_pred c-----CCccccCC---------CcccEEecCC-ccc--ccCCCCccChhhhcCCCCCCeEEeecCCCC------CCCCC
Q 038110 512 S-----LPSSIGLL---------TNLHTLCLYG-GVG--VVDGVKNASLEELKHFPNLTSLELEVNDAN------TLPRG 568 (667)
Q Consensus 512 ~-----lP~si~~L---------~~L~~L~L~~-~l~--~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~------~lP~~ 568 (667)
. ++..+..+ ++|++|+|++ .+. .+| .....+..+++|++|++++|.+. -+|..
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~ 211 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK----EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH----HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH----HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH
Confidence 2 33334444 6777777776 332 222 00035667888888888888876 34446
Q ss_pred CcCCCCCCeeEEEecCc-----cCCCcccccccccceEEeecCccccch-HHHHHH-----hhhcceeeccccccccccc
Q 038110 569 GLFFEKPERYKILTGHR-----WSRGFYRSSNKSYRSFRIDLDANVRLK-DRLVVQ-----LRGIEELSLAGLLDQDIKN 637 (667)
Q Consensus 569 ~~~l~~L~~l~~~~~~~-----~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~-----l~~L~~L~L~~~~~~~~~~ 637 (667)
+..+++|+.|++..+.. ..++........++.|.|+.+...... ..+... +++|+.|+|++| .+..
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n---~i~~ 288 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN---EIEL 288 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS---CCBH
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC---cCCH
Confidence 66788888887765442 112222233445677777765543321 111111 468899999888 3333
Q ss_pred -----cchhhhhccCCCccEEEeecCCCC
Q 038110 638 -----FVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 638 -----~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
+|..+. .++++|+.|++++|+-.
T Consensus 289 ~g~~~l~~~l~-~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 289 DAVRTLKTVID-EKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHHHH-HHCTTCCEEECTTSBSC
T ss_pred HHHHHHHHHHH-hcCCCceEEEccCCcCC
Confidence 777663 45789999999888643
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=1e-11 Score=119.46 Aligned_cols=106 Identities=23% Similarity=0.318 Sum_probs=62.1
Q ss_pred cccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~ 524 (667)
.+++++.|++.+|.+..++.. ..+++|++|++++|.. ..+|...|.++++|++|+|++|.++.+|.. ++.+++|+
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL--QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC--CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence 445666666666666555542 2456666666666655 445555456666666666666666655543 45666666
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCC
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVND 561 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~ 561 (667)
+|++++ .+..+|. ..+.++++|++|++++|.
T Consensus 128 ~L~l~~N~l~~~~~------~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 128 DLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp EEECCSSCCSCCCT------TTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccceeCH------HHhccCCCccEEEecCCC
Confidence 666666 5555551 235566666666666664
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=3.1e-12 Score=139.79 Aligned_cols=181 Identities=11% Similarity=0.062 Sum_probs=120.3
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCC---------C
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGV---------K 539 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~---------~ 539 (667)
.+++|++|++++|.. ..+++..|+++++|++|+|++|.+..+|+ ++.+++|++|+|++ .+..+|.. .
T Consensus 32 ~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred cCCCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcC
Confidence 456999999999987 45665556999999999999999997765 99999999999999 66666510 0
Q ss_pred ccC-hhhhcCCCCCCeEEeecCCCCCCCC-CCcCCCCCCeeEEEecCccCC-C-cccccccccceEEeecCccccchHHH
Q 038110 540 NAS-LEELKHFPNLTSLELEVNDANTLPR-GGLFFEKPERYKILTGHRWSR-G-FYRSSNKSYRSFRIDLDANVRLKDRL 615 (667)
Q Consensus 540 ~~~-~~~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~l~~~~~~~~~~-~-~~~~~~~~l~~l~l~~~~~~~~~~~~ 615 (667)
+.. -.....+++|++|++++|.+..+++ .++++++|+.|+++.+..... + .+......++.|.|+.+.....+...
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~ 188 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc
Confidence 000 0001235667777777777666543 455677777776654432211 1 12223355666677665544432211
Q ss_pred HHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecCCC
Q 038110 616 VVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGYRG 660 (667)
Q Consensus 616 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 660 (667)
.+++|+.|+|++| .+..+|+.+ ..+++|+.|++++|.-
T Consensus 189 --~l~~L~~L~Ls~N---~l~~~~~~~--~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 189 --VFAKLKTLDLSSN---KLAFMGPEF--QSAAGVTWISLRNNKL 226 (487)
T ss_dssp --CCTTCCEEECCSS---CCCEECGGG--GGGTTCSEEECTTSCC
T ss_pred --cCCCCCEEECCCC---CCCCCCHhH--cCCCCccEEEecCCcC
Confidence 2567888888887 555677777 7888999999988864
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=8.2e-12 Score=119.06 Aligned_cols=132 Identities=14% Similarity=0.205 Sum_probs=113.5
Q ss_pred CCCccccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCcc-CCccccCC
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLS-LPSSIGLL 520 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lP~si~~L 520 (667)
.++....+++++.|.+.+|.+..++....+++|++|++++|... ...|..+ +++++|++|+|++|.+.. .|..++.+
T Consensus 58 ~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~l~~l 135 (197)
T 4ezg_A 58 DLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT-SDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTL 135 (197)
T ss_dssp CCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCB-GGGSCCC-TTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred ChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccC-cccChhh-cCCCCCCEEEecCCccCcHhHHHHhhC
Confidence 44566778899999999998888777678999999999999875 4456655 999999999999999984 78889999
Q ss_pred CcccEEecCC-c-ccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecC
Q 038110 521 TNLHTLCLYG-G-VGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGH 584 (667)
Q Consensus 521 ~~L~~L~L~~-~-l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~ 584 (667)
++|++|++++ . +..+| .+..+++|++|++++|.+..+| .+..+++|+.|++..+.
T Consensus 136 ~~L~~L~L~~n~~i~~~~--------~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 136 PKVNSIDLSYNGAITDIM--------PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSCCEEECCSCTBCCCCG--------GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCCCEEEccCCCCccccH--------hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 9999999999 5 88887 5899999999999999999988 66789999999887444
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=8.2e-12 Score=121.31 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=109.6
Q ss_pred cccceeEEEEeccCccccCC---CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcc
Q 038110 448 RVRHCTSIVILDVKTYVLPE---VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNL 523 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L 523 (667)
....++.|.+.+|.+..++. ...+++|++|++++|.. ..++...|.++++|++|+|++|.++.+|.. ++.+.+|
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC--CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 35678899999999988743 23799999999999987 567776679999999999999999988664 8999999
Q ss_pred cEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCC-CCCCcCCCCCCeeEEEecC
Q 038110 524 HTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTL-PRGGLFFEKPERYKILTGH 584 (667)
Q Consensus 524 ~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~l~~~~~~ 584 (667)
++|+|++ .+..++. ..|..+++|++|++++|.+..+ |..+..+++|+.|++..+.
T Consensus 108 ~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 108 KTLMLRSNRITCVGN------DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CEEECTTSCCCCBCT------TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEECCCCcCCeECH------hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9999999 7877742 7799999999999999999998 4557789999999887444
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=5.2e-12 Score=144.59 Aligned_cols=102 Identities=21% Similarity=0.115 Sum_probs=63.5
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccChhhhcC
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKH 548 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~ 548 (667)
.+++|+.|++++|.. ..+|..+ .++++|++|+|++|.|+.+|.+|++|.+|++|+|++ .+..+| ..|++
T Consensus 222 ~l~~L~~L~Ls~n~l--~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-------~~~~~ 291 (727)
T 4b8c_D 222 DDQLWHALDLSNLQI--FNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP-------AELGS 291 (727)
T ss_dssp CCCCCCEEECTTSCC--SCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCC-------SSGGG
T ss_pred cCCCCcEEECCCCCC--CCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccC-------hhhcC
Confidence 455666666666655 4566655 366666666666666666666666666666666666 555666 55666
Q ss_pred CCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEE
Q 038110 549 FPNLTSLELEVNDANTLPRGGLFFEKPERYKIL 581 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~ 581 (667)
|++|++|+|++|.++.+|.+++.|++|+.|++.
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence 666666666666666666665566666666554
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=1.2e-12 Score=138.95 Aligned_cols=208 Identities=14% Similarity=0.094 Sum_probs=144.3
Q ss_pred ccccceeEEEEeccCcccc-----CC-CCCCCCccEEEccCCCCc--cccccHHH------HhCCCCCcEEEcCCCCCcc
Q 038110 447 SRVRHCTSIVILDVKTYVL-----PE-VMECPQLKLFSMPAEKNS--FFAIPHNL------FRSMLQVRVLDLTDMNLLS 512 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l-----~~-~~~~~~Lr~L~l~~~~~~--~~~lp~~~------~~~l~~Lr~L~L~~~~i~~ 512 (667)
...++++.|++.+|.+... +. ...+++|++|++++|... ...+|..+ |.++++|++|+|++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 3457899999999987542 22 236899999999987431 13456554 4799999999999999886
Q ss_pred -----CCccccCCCcccEEecCC-ccc-----ccCCCCccChhhhcCC---------CCCCeEEeecCCCC--CCC---C
Q 038110 513 -----LPSSIGLLTNLHTLCLYG-GVG-----VVDGVKNASLEELKHF---------PNLTSLELEVNDAN--TLP---R 567 (667)
Q Consensus 513 -----lP~si~~L~~L~~L~L~~-~l~-----~LP~~~~~~~~~l~~L---------~~L~~L~l~~~~l~--~lP---~ 567 (667)
+|..++++++|++|+|++ .+. .++ ..+..+ ++|++|++++|.+. .+| .
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~-------~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA-------RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH-------HHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH-------HHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 788999999999999998 443 344 445555 89999999999985 455 3
Q ss_pred CCcCCCCCCeeEEEecCccC------CCcccccccccceEEeecCccc----cchHHHHHHhhhcceeeccccccc--cc
Q 038110 568 GGLFFEKPERYKILTGHRWS------RGFYRSSNKSYRSFRIDLDANV----RLKDRLVVQLRGIEELSLAGLLDQ--DI 635 (667)
Q Consensus 568 ~~~~l~~L~~l~~~~~~~~~------~~~~~~~~~~l~~l~l~~~~~~----~~~~~~~~~l~~L~~L~L~~~~~~--~~ 635 (667)
.+..+++|+.|++..+.-.. .+........++.|.|+.+... ...+.....+++|+.|+|++|.-. +.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 45578899999887554220 1102233456778888876553 112222234479999999999211 11
Q ss_pred cccchhhhhccCCCccEEEeecCCCC
Q 038110 636 KNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 636 ~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
..++..+...++++|+.|+|++|.-.
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCC
Confidence 23567762234899999999999753
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=3.5e-11 Score=122.16 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=115.2
Q ss_pred CCCccccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCC
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLT 521 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~ 521 (667)
.++....+++++.|++.+|.+..++....+++|++|++++|.. ..+|. +..+++|++|+|++|.+..+| .++.++
T Consensus 60 ~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l--~~~~~--l~~l~~L~~L~L~~n~i~~~~-~l~~l~ 134 (291)
T 1h6t_A 60 SVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV--KDLSS--LKDLKKLKSLSLEHNGISDIN-GLVHLP 134 (291)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCGGG--GTTCTTCCEEECTTSCCCCCG-GGGGCT
T ss_pred cChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcC--CCChh--hccCCCCCEEECCCCcCCCCh-hhcCCC
Confidence 3455667789999999999998887766899999999999987 55655 489999999999999999874 688999
Q ss_pred cccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccce
Q 038110 522 NLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRS 600 (667)
Q Consensus 522 ~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~ 600 (667)
+|++|++++ .+..++ .++++++|++|++++|.+..+|. +..+++|+.|++..+.-..++.+. ....++.
T Consensus 135 ~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~-~l~~L~~ 204 (291)
T 1h6t_A 135 QLESLYLGNNKITDIT--------VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALA-GLKNLDV 204 (291)
T ss_dssp TCCEEECCSSCCCCCG--------GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGT-TCTTCSE
T ss_pred CCCEEEccCCcCCcch--------hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhc-cCCCCCE
Confidence 999999998 676665 68889999999999999888877 678889999988755433332211 2233444
Q ss_pred EEeec
Q 038110 601 FRIDL 605 (667)
Q Consensus 601 l~l~~ 605 (667)
+.+++
T Consensus 205 L~l~~ 209 (291)
T 1h6t_A 205 LELFS 209 (291)
T ss_dssp EEEEE
T ss_pred EECcC
Confidence 45444
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=2.2e-11 Score=121.80 Aligned_cols=128 Identities=15% Similarity=0.099 Sum_probs=106.5
Q ss_pred CCCccccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCC
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLT 521 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~ 521 (667)
.++....+++++.|++.+|.+..++....+++|+.|++++|.. ..+|.. .. .+|++|+|++|.++.+| .++.++
T Consensus 55 ~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l--~~l~~~--~~-~~L~~L~L~~N~l~~~~-~l~~l~ 128 (263)
T 1xeu_A 55 SLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRL--KNLNGI--PS-ACLSRLFLDNNELRDTD-SLIHLK 128 (263)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC--SCCTTC--CC-SSCCEEECCSSCCSBSG-GGTTCT
T ss_pred cchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCcc--CCcCcc--cc-CcccEEEccCCccCCCh-hhcCcc
Confidence 4455667789999999999998887766889999999999987 566653 33 89999999999999886 589999
Q ss_pred cccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecC
Q 038110 522 NLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGH 584 (667)
Q Consensus 522 ~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~ 584 (667)
+|++|++++ .+..+| .++.+++|++|++++|.+..+ ..+..+++|+.|++..+.
T Consensus 129 ~L~~L~Ls~N~i~~~~--------~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 129 NLEILSIRNNKLKSIV--------MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCEEECTTSCCCBCG--------GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cccEEECCCCcCCCCh--------HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 999999998 777776 588899999999999998888 456788999999888665
No 111
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=3.8e-12 Score=119.06 Aligned_cols=127 Identities=11% Similarity=0.088 Sum_probs=105.2
Q ss_pred ccccceeEEEEeccCccccCCCCCCC-CccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccc-cCCCccc
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVMECP-QLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSI-GLLTNLH 524 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si-~~L~~L~ 524 (667)
..+.+++.|++.+|.+..++....+. +|++|++++|.. ..+ +. |+++++|++|+|++|.++.+|..+ +.+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l--~~~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKL-DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEE-CC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC--Ccc-cc-cccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 44578999999999998887655544 999999999987 455 33 489999999999999999988765 8999999
Q ss_pred EEecCC-cccccCCCCccChh--hhcCCCCCCeEEeecCCCCCCCCC----CcCCCCCCeeEEEecC
Q 038110 525 TLCLYG-GVGVVDGVKNASLE--ELKHFPNLTSLELEVNDANTLPRG----GLFFEKPERYKILTGH 584 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~--~l~~L~~L~~L~l~~~~l~~lP~~----~~~l~~L~~l~~~~~~ 584 (667)
+|++++ .+..+| . .++.+++|++|++++|.+..+|.. +..+++|+.|++..+.
T Consensus 92 ~L~L~~N~i~~~~-------~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELG-------DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGG-------GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcch-------hhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999 788888 5 788999999999999998888885 6688888888766443
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=1.1e-11 Score=129.97 Aligned_cols=169 Identities=11% Similarity=0.015 Sum_probs=126.5
Q ss_pred eEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHh-CCCCCcEEEcCCCCCccCC-ccccCCCcccEEecCC
Q 038110 453 TSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFR-SMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYG 530 (667)
Q Consensus 453 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~-~l~~Lr~L~L~~~~i~~lP-~si~~L~~L~~L~L~~ 530 (667)
+.+++.++++..+|... .+.++.|++++|.. ..++...|. ++++|++|+|++|.|..+| ..++++.+|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888998888644 46799999999987 677777767 9999999999999999886 4699999999999999
Q ss_pred -cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCC-CCcCCCCCCeeEEEecCccCCCccc----ccccccceEEee
Q 038110 531 -GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPR-GGLFFEKPERYKILTGHRWSRGFYR----SSNKSYRSFRID 604 (667)
Q Consensus 531 -~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~l~~~~~~~~~~~~~~----~~~~~l~~l~l~ 604 (667)
.+..+|. ..|.++++|++|++++|.+..+++ .+..+++|+.|++..+.-..++... .....++.|.|+
T Consensus 98 N~l~~~~~------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 98 NHLHTLDE------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SCCCEECT------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CcCCcCCH------HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 8888873 468999999999999999998865 4778999999988765544433211 123445556666
Q ss_pred cCccccchHHHHHHhhh--cceeecccc
Q 038110 605 LDANVRLKDRLVVQLRG--IEELSLAGL 630 (667)
Q Consensus 605 ~~~~~~~~~~~~~~l~~--L~~L~L~~~ 630 (667)
.+.....+......++. |+.|+|.+|
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCC
Confidence 55554444333333343 356666666
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.24 E-value=6.8e-12 Score=116.27 Aligned_cols=128 Identities=19% Similarity=0.213 Sum_probs=93.2
Q ss_pred ccceeEEEEeccCcc--ccCCC-CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCcc-CCccccCCCccc
Q 038110 449 VRHCTSIVILDVKTY--VLPEV-MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLS-LPSSIGLLTNLH 524 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~--~l~~~-~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lP~si~~L~~L~ 524 (667)
+++++.|.+.+|.+. .+|.. ..+++|++|++++|.. ..+ .. |..+++|++|+|++|.+.. +|..++++++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l--~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISV-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC--CCC-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC--CCh-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 467888888888776 67665 3678888888888876 344 33 4788888888888888876 677777788888
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCC----CCcCCCCCCeeEEEecCc
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPR----GGLFFEKPERYKILTGHR 585 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~----~~~~l~~L~~l~~~~~~~ 585 (667)
+|++++ .+..+|. +..++.+++|++|++++|.+..+|. .+..+++|+.|++..+..
T Consensus 99 ~L~Ls~N~l~~~~~-----~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKLKDIST-----LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSSCCSSGG-----GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCccCcchh-----HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 888887 6666540 1467788888888888888877777 456777888877665543
No 114
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=4.4e-12 Score=130.19 Aligned_cols=171 Identities=16% Similarity=0.087 Sum_probs=130.0
Q ss_pred ccccceeEEEEeccCccccCC------CCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCcc---CCcc-
Q 038110 447 SRVRHCTSIVILDVKTYVLPE------VMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLS---LPSS- 516 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~------~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~---lP~s- 516 (667)
....+++.|++++|.+..... ...+++|++|++++|.. ..++...|+++++|++|+|++|.+.. +|..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS--PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS--CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc--chhhHHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence 557889999999998865322 12588999999999987 55665556999999999999998753 4433
Q ss_pred -ccCCCcccEEecCC-cccccCCCCccChhh----hcCCCCCCeEEeecCCCCCC-CCCCcCC---CCCCeeEEEecCcc
Q 038110 517 -IGLLTNLHTLCLYG-GVGVVDGVKNASLEE----LKHFPNLTSLELEVNDANTL-PRGGLFF---EKPERYKILTGHRW 586 (667)
Q Consensus 517 -i~~L~~L~~L~L~~-~l~~LP~~~~~~~~~----l~~L~~L~~L~l~~~~l~~l-P~~~~~l---~~L~~l~~~~~~~~ 586 (667)
++.+++|++|+|++ .+..+| .. ++++++|++|++++|.+..+ |..+..+ ++|+.|+++.+.-.
T Consensus 192 ~~~~l~~L~~L~Ls~N~l~~l~-------~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTGMETPT-------GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CTTSSCCCCSCBCCSSCCCCHH-------HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred hhhcCCCCCEEECCCCCCCchH-------HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 47899999999999 776666 32 57889999999999998887 7776655 69999988766544
Q ss_pred CCCcccccccccceEEeecCccccchHHHHHHhhhcceeecccc
Q 038110 587 SRGFYRSSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAGL 630 (667)
Q Consensus 587 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 630 (667)
.++. .....++.+.++.+.....+. ...+++|+.|+|++|
T Consensus 265 ~lp~--~~~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 265 QVPK--GLPAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGN 304 (310)
T ss_dssp SCCS--CCCSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSST
T ss_pred chhh--hhcCCCCEEECCCCcCCCCch--hhhCCCccEEECcCC
Confidence 4433 223678888888866655322 245689999999999
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=3.7e-11 Score=134.16 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=119.2
Q ss_pred CCCccccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCC
Q 038110 442 EWSDESRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLT 521 (667)
Q Consensus 442 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~ 521 (667)
.++....+++++.|++.+|.+..++....+++|+.|++++|.. ..+| . |..+++|++|+|++|.+..+| .++.|+
T Consensus 57 ~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l--~~l~-~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~ 131 (605)
T 1m9s_A 57 SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI--KDLS-S-LKDLKKLKSLSLEHNGISDIN-GLVHLP 131 (605)
T ss_dssp CCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC--CCCT-T-STTCTTCCEEECTTSCCCCCG-GGGGCT
T ss_pred CChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCC--CCCh-h-hccCCCCCEEEecCCCCCCCc-cccCCC
Confidence 3445667789999999999988887766899999999999877 4565 3 489999999999999998875 588899
Q ss_pred cccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCccCCCcccccccccce
Q 038110 522 NLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRWSRGFYRSSNKSYRS 600 (667)
Q Consensus 522 ~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~ 600 (667)
+|+.|+|++ .+..++ .++.|++|+.|+|++|.+..+|+ +..+++|+.|++..+.-..++.+. ....++.
T Consensus 132 ~L~~L~Ls~N~l~~l~--------~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~-~l~~L~~ 201 (605)
T 1m9s_A 132 QLESLYLGNNKITDIT--------VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALA-GLKNLDV 201 (605)
T ss_dssp TCSEEECCSSCCCCCG--------GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGT-TCTTCSE
T ss_pred ccCEEECCCCccCCch--------hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHc-cCCCCCE
Confidence 999999998 666665 68889999999999999888876 678899999988766544443332 2345677
Q ss_pred EEeecCcc
Q 038110 601 FRIDLDAN 608 (667)
Q Consensus 601 l~l~~~~~ 608 (667)
|.|+.+..
T Consensus 202 L~L~~N~l 209 (605)
T 1m9s_A 202 LELFSQEC 209 (605)
T ss_dssp EECCSEEE
T ss_pred EEccCCcC
Confidence 77776444
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=4.8e-11 Score=113.27 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=104.7
Q ss_pred eEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCC-ccccCCCcccEEecCC-
Q 038110 453 TSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYG- 530 (667)
Q Consensus 453 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP-~si~~L~~L~~L~L~~- 530 (667)
+.+.+.++.+..+|... .++|++|++++|.. ..+|..+ .++++|++|+|++|.++.+| ..|.+|.+|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i--~~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF--TLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CSCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC--chhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46788888888888654 47999999999987 6888654 99999999999999999886 4699999999999999
Q ss_pred cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecC
Q 038110 531 GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGH 584 (667)
Q Consensus 531 ~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~ 584 (667)
.+..+|. ..|.++++|++|++++|.+..+|.+ +..+++|+.|++..+.
T Consensus 89 ~l~~i~~------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPP------RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCT------TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCH------HHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 8888873 5699999999999999999999986 5688999999876443
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.23 E-value=2.5e-12 Score=133.49 Aligned_cols=196 Identities=12% Similarity=0.049 Sum_probs=143.5
Q ss_pred ceeEEEEeccCccccCCCCCC--CCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCcc--CCccccCCCcccEE
Q 038110 451 HCTSIVILDVKTYVLPEVMEC--PQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLS--LPSSIGLLTNLHTL 526 (667)
Q Consensus 451 ~lr~L~l~~~~~~~l~~~~~~--~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~--lP~si~~L~~L~~L 526 (667)
.++++++.++.+.. .....+ ++++.|.+.+|... ..+..+ .++++|++|+|++|.+.. +|..++.+++|++|
T Consensus 48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~--~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMD--QPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEEC--SCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCCH-HHHHhhhhccceEEEcCCcccc--ccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 46778887776541 001133 78999999998764 444445 689999999999999873 88899999999999
Q ss_pred ecCC-ccc-ccCCCCccChhhhcCCCCCCeEEeecC-CCCC--CCCCCcCCCCCCeeEEEecCccC---CCccccccc-c
Q 038110 527 CLYG-GVG-VVDGVKNASLEELKHFPNLTSLELEVN-DANT--LPRGGLFFEKPERYKILTGHRWS---RGFYRSSNK-S 597 (667)
Q Consensus 527 ~L~~-~l~-~LP~~~~~~~~~l~~L~~L~~L~l~~~-~l~~--lP~~~~~l~~L~~l~~~~~~~~~---~~~~~~~~~-~ 597 (667)
++++ .+. ..| ..++++++|++|++++| .++. +|..+..+++|+.|++..+.... ++....... .
T Consensus 124 ~L~~~~l~~~~~-------~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 124 SLEGLRLSDPIV-------NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp ECTTCBCCHHHH-------HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred eCcCcccCHHHH-------HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 9999 544 466 78999999999999999 5763 66656789999999887552121 222223344 7
Q ss_pred cceEEeecCc--cc-cchHHHHHHhhhcceeeccccccccc-cccchhhhhccCCCccEEEeecCCCC
Q 038110 598 YRSFRIDLDA--NV-RLKDRLVVQLRGIEELSLAGLLDQDI-KNFVNELVKVGSSQLKYLQIEGYRGP 661 (667)
Q Consensus 598 l~~l~l~~~~--~~-~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~l~~~~l~~L~~L~l~~~~~l 661 (667)
++.+.++++. .. ...+.....+++|+.|+|++| ... ...+..+ ..+++|+.|++++|.++
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~l~~~~~~~l--~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS--VMLKNDCFQEF--FQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC--TTCCGGGGGGG--GGCTTCCEEECTTCTTC
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC--CcCCHHHHHHH--hCCCCCCEeeCCCCCCC
Confidence 8888888753 22 223334455689999999999 422 4567788 88999999999999643
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=3.6e-11 Score=114.08 Aligned_cols=122 Identities=13% Similarity=0.144 Sum_probs=102.5
Q ss_pred eEEEEeccCccccCCCCCCCCccEEEccCCCCccccccH-HHHhCCCCCcEEEcCCCCCccC-CccccCCCcccEEecCC
Q 038110 453 TSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPH-NLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYG 530 (667)
Q Consensus 453 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~-~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L~~L~L~~ 530 (667)
+.+.++++.+..+|... .++|++|++++|.. ..++. .+|+++++|++|+|++|.++.+ |..++.+.+|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888889998888754 34999999999987 56665 3469999999999999999977 77899999999999999
Q ss_pred -cccccCCCCccChhhhcCCCCCCeEEeecCCCCCC-CCCCcCCCCCCeeEEEec
Q 038110 531 -GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTL-PRGGLFFEKPERYKILTG 583 (667)
Q Consensus 531 -~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~l~~~~~ 583 (667)
.+..+|. ..|.++++|++|++++|.+..+ |..+..+++|+.|++..+
T Consensus 88 N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NKIKEISN------KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCCEECS------SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CcCCccCH------HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 8888872 4589999999999999998877 455778899999977643
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=9e-11 Score=109.68 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=103.6
Q ss_pred eeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcccEEecCC
Q 038110 452 CTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHTLCLYG 530 (667)
Q Consensus 452 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~~L~L~~ 530 (667)
.+.+.+.++++..+|.. ..++|+.|++++|.. ..+|...|.++++|++|+|++|.++.+|.. ++.+.+|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35677888888888754 358999999999987 577877779999999999999999998765 68999999999999
Q ss_pred -cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCC-cCCCCCCeeEEEec
Q 038110 531 -GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGG-LFFEKPERYKILTG 583 (667)
Q Consensus 531 -~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~-~~l~~L~~l~~~~~ 583 (667)
.+..+|. ..++++++|++|++++|.+..+|..+ ..+++|+.|++..+
T Consensus 86 N~l~~~~~------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 86 NKLQSLPN------GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccCH------HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 8888882 34789999999999999999999874 57889999877643
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=1.4e-11 Score=111.65 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=101.9
Q ss_pred ccceeEEEEeccCcc--ccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCcc-CCccccCCCccc
Q 038110 449 VRHCTSIVILDVKTY--VLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLS-LPSSIGLLTNLH 524 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lP~si~~L~~L~ 524 (667)
+++++.|++.+|.+. .+|... .+++|++|++++|.. ..+ .. |+++++|++|+|++|.+.. +|..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~-~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSI-AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC--CCC-TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC--CCc-hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 468999999999887 777653 789999999999977 455 33 5999999999999999997 888888899999
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCC----CCcCCCCCCeeEE
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPR----GGLFFEKPERYKI 580 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~----~~~~l~~L~~l~~ 580 (667)
+|++++ .+..+| .+..++.+++|++|++++|.+..+|. .+..+++|+.|++
T Consensus 92 ~L~ls~N~i~~~~-----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGNKIKDLS-----TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTSCCCSHH-----HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEECCCCcCCChH-----HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 999999 666653 01578999999999999999988887 3567888888754
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=4.5e-11 Score=132.66 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=103.1
Q ss_pred ceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC
Q 038110 451 HCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG 530 (667)
Q Consensus 451 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~ 530 (667)
.++.|++++|.+..+|....+++|+.|++++|.. ..+|..+ +++++|++|+|++|.++.+| ++++|++|++|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l--~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL--RALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCC--CCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccc--cccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 4788999999998888866889999999999987 5888876 99999999999999999998 899999999999999
Q ss_pred -ccccc--CCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCc----CCCCCCeeE
Q 038110 531 -GVGVV--DGVKNASLEELKHFPNLTSLELEVNDANTLPRGGL----FFEKPERYK 579 (667)
Q Consensus 531 -~l~~L--P~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~----~l~~L~~l~ 579 (667)
.+..+ | ..+++|++|++|++++|.+..+|+.+. .+++|+.|+
T Consensus 518 N~l~~~~~p-------~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAI-------QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTT-------GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCc-------HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 78877 8 899999999999999999988887643 477787774
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=1.5e-10 Score=107.02 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=99.8
Q ss_pred ccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCC--ccccCCCccc
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLP--SSIGLLTNLH 524 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP--~si~~L~~L~ 524 (667)
..+++++.|++.+|.+..++....+++|++|++++|... ..+|.. +.++++|++|+|++|.++.+| ..++.+++|+
T Consensus 46 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIF-GGLDML-AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCC-SCCCHH-HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCc-hHHHHH-HhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 567899999999999988855558999999999999884 335654 488999999999999999987 7899999999
Q ss_pred EEecCC-cccccCCCCccChh----hhcCCCCCCeEEeecCCCCCCCCC
Q 038110 525 TLCLYG-GVGVVDGVKNASLE----ELKHFPNLTSLELEVNDANTLPRG 568 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~----~l~~L~~L~~L~l~~~~l~~lP~~ 568 (667)
+|++++ .+..+| . .+..+++|++|++++|.+.++|.+
T Consensus 124 ~L~l~~N~l~~~~-------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 124 SLDLFNCEVTNLN-------DYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECCSSGGGTST-------THHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EEEeeCCcCcchH-------HHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999 888888 6 789999999999999999999876
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=3.2e-11 Score=138.08 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=91.2
Q ss_pred ccccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHT 525 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~ 525 (667)
..+..++.|++.+|.+..+|... .+++|++|++++|.. ..+|..+ ++|++|++|+|++|.|+.+|.+|++|.+|++
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l--~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSL--TELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCC--SCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcC--cccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 44567888888888888777544 788888888888877 5788776 8888888999988888888888888888888
Q ss_pred EecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC
Q 038110 526 LCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG 568 (667)
Q Consensus 526 L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~ 568 (667)
|+|++ .+..+| .+|++|++|++|+|++|.+...++.
T Consensus 298 L~L~~N~l~~lp-------~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 298 FYFFDNMVTTLP-------WEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp EECCSSCCCCCC-------SSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred EECCCCCCCccC-------hhhhcCCCccEEeCCCCccCCCChH
Confidence 88888 788888 7788888888888888887755443
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.12 E-value=4.1e-11 Score=125.84 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=7.3
Q ss_pred CCCcEEEcCCCCCc
Q 038110 498 LQVRVLDLTDMNLL 511 (667)
Q Consensus 498 ~~Lr~L~L~~~~i~ 511 (667)
++|++|+|++|.++
T Consensus 80 ~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 80 ANVTSLNLSGNFLS 93 (362)
T ss_dssp TTCCEEECCSSCGG
T ss_pred CCccEEECcCCcCC
Confidence 45555555555544
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=6.3e-11 Score=107.30 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=67.5
Q ss_pred CCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccc-cCCCCccChhhhcC
Q 038110 471 CPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGV-VDGVKNASLEELKH 548 (667)
Q Consensus 471 ~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~-LP~~~~~~~~~l~~ 548 (667)
.++|+.|++++|......+|..+ ..+++|++|++++|.++.+ ..++.+++|++|++++ .+.. +| ..+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~-------~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLE-------VLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTH-------HHHHH
T ss_pred CccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHH-------HHhhh
Confidence 46677777777765212566543 7777777777777777766 6677777777777777 5555 56 66666
Q ss_pred CCCCCeEEeecCCCCCCC--CCCcCCCCCCeeEEE
Q 038110 549 FPNLTSLELEVNDANTLP--RGGLFFEKPERYKIL 581 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~lP--~~~~~l~~L~~l~~~ 581 (667)
+++|++|++++|.+..+| ..+..+++|+.|++.
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 777777777777776654 444455555555443
No 126
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=2.8e-10 Score=106.02 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=80.3
Q ss_pred eEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcccEEecCC-
Q 038110 453 TSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHTLCLYG- 530 (667)
Q Consensus 453 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~~L~L~~- 530 (667)
+.+.+.+|.+..+|... .++|+.|++++|.. ..+++..|.++++|++|+|++|.++.+|.. ++++.+|++|+|++
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777887777654 37888888888876 456555558888888888888888888776 47788888888888
Q ss_pred cccccCCCCccChhh-hcCCCCCCeEEeecCCCCCCCCC
Q 038110 531 GVGVVDGVKNASLEE-LKHFPNLTSLELEVNDANTLPRG 568 (667)
Q Consensus 531 ~l~~LP~~~~~~~~~-l~~L~~L~~L~l~~~~l~~lP~~ 568 (667)
.+..+| .. |.++++|++|++++|.+...|..
T Consensus 92 ~l~~l~-------~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 92 HLKSIP-------RGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCCCCC-------TTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred ccceeC-------HHHhccccCCCEEEeCCCCccccccc
Confidence 777777 44 77888888888888877766654
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.04 E-value=1.7e-10 Score=121.10 Aligned_cols=196 Identities=11% Similarity=0.039 Sum_probs=120.7
Q ss_pred EEeccCccc-cCCCCC-CCCccEEEccCCCCccccccH----HHHhCCC-CCcEEEcCCCCCccC-CccccCC-----Cc
Q 038110 456 VILDVKTYV-LPEVME-CPQLKLFSMPAEKNSFFAIPH----NLFRSML-QVRVLDLTDMNLLSL-PSSIGLL-----TN 522 (667)
Q Consensus 456 ~l~~~~~~~-l~~~~~-~~~Lr~L~l~~~~~~~~~lp~----~~~~~l~-~Lr~L~L~~~~i~~l-P~si~~L-----~~ 522 (667)
.+..|++.. +|.... .++|++|++++|.. ...+. ..|.+++ +|++|+|++|.+... |..++.+ .+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 445555543 333333 44599999999987 55654 4568898 999999999999865 6667775 99
Q ss_pred ccEEecCC-cccccCCCCccChhhhcCC-CCCCeEEeecCCCCCCCCC-C----cC-CCCCCeeEEEecCccCC--Ccc-
Q 038110 523 LHTLCLYG-GVGVVDGVKNASLEELKHF-PNLTSLELEVNDANTLPRG-G----LF-FEKPERYKILTGHRWSR--GFY- 591 (667)
Q Consensus 523 L~~L~L~~-~l~~LP~~~~~~~~~l~~L-~~L~~L~l~~~~l~~lP~~-~----~~-l~~L~~l~~~~~~~~~~--~~~- 591 (667)
|++|+|++ .+...+. ......+..+ ++|++|++++|.+...+.. + .. .++|+.|++..+.-... ..+
T Consensus 82 L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSS--DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp CCEEECCSSCGGGSCH--HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred ccEEECcCCcCChHHH--HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 99999999 6665541 0000125555 7899999999988776653 1 23 25888887764432110 011
Q ss_pred ---cccccccceEEeecCccccchH-HHHH---Hh-hhcceeeccccccccccc-----cchhhhhcc-CCCccEEEeec
Q 038110 592 ---RSSNKSYRSFRIDLDANVRLKD-RLVV---QL-RGIEELSLAGLLDQDIKN-----FVNELVKVG-SSQLKYLQIEG 657 (667)
Q Consensus 592 ---~~~~~~l~~l~l~~~~~~~~~~-~~~~---~l-~~L~~L~L~~~~~~~~~~-----~~~~l~~~~-l~~L~~L~l~~ 657 (667)
......++.+.|+.+....... .+.. .. ++|+.|+|++| .+.. ++..+ .. .++|+.|+|++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N---~i~~~~~~~l~~~l--~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN---LLGLKSYAELAYIF--SSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS---CGGGSCHHHHHHHH--HHSCTTCCEEECCS
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC---CCChhHHHHHHHHH--hcCCCCceEEECcC
Confidence 1122356777777655443322 2211 12 47888888877 3332 55555 33 35777777777
Q ss_pred CCC
Q 038110 658 YRG 660 (667)
Q Consensus 658 ~~~ 660 (667)
|.-
T Consensus 235 N~l 237 (362)
T 3goz_A 235 NCL 237 (362)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=2.9e-10 Score=106.08 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=97.2
Q ss_pred Ccccccc-ceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc--cccCC
Q 038110 444 SDESRVR-HCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS--SIGLL 520 (667)
Q Consensus 444 ~~~~~~~-~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~--si~~L 520 (667)
+...... +++.|++++|.+..++....+++|++|++++|.. ..+|+.+|..+++|++|+|++|.+..+|. .++.+
T Consensus 35 ~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l 112 (176)
T 1a9n_A 35 ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRI--CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112 (176)
T ss_dssp CCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCC--CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGC
T ss_pred HHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcc--cccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcC
Confidence 3333444 8999999999998886666899999999999987 67887778999999999999999999998 89999
Q ss_pred CcccEEecCC-cccccCCCCccChhh----hcCCCCCCeEEeecCCCC
Q 038110 521 TNLHTLCLYG-GVGVVDGVKNASLEE----LKHFPNLTSLELEVNDAN 563 (667)
Q Consensus 521 ~~L~~L~L~~-~l~~LP~~~~~~~~~----l~~L~~L~~L~l~~~~l~ 563 (667)
++|++|++++ .+..+| .. ++.+++|++||++.|...
T Consensus 113 ~~L~~L~l~~N~i~~~~-------~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 113 KSLTYLCILRNPVTNKK-------HYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSSGGGGST-------THHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEEecCCCCCCcH-------hHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999 888888 54 899999999999988654
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=4.3e-10 Score=124.72 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=98.4
Q ss_pred eeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-
Q 038110 452 CTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG- 530 (667)
Q Consensus 452 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~- 530 (667)
+..+.+.+|.+..++. ..|++|++++|.. ..+|. |+++++|++|+|++|.++.+|.++++|++|++|+|++
T Consensus 425 L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l--~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY----ADVRVLHLAHKDL--TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHH----TTCSEEECTTSCC--SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhhhcccccccCc----cCceEEEecCCCC--CCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 3334444555555443 3599999999987 56887 4999999999999999999999999999999999999
Q ss_pred cccccCCCCccChhhhcCCCCCCeEEeecCCCCCC--CCCCcCCCCCCeeEEEecC
Q 038110 531 GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTL--PRGGLFFEKPERYKILTGH 584 (667)
Q Consensus 531 ~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~l--P~~~~~l~~L~~l~~~~~~ 584 (667)
.+..+| .+++|++|++|++++|.+..+ |..+..+++|+.|++..+.
T Consensus 497 ~l~~lp--------~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 497 ALENVD--------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCCCCG--------GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCc--------ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 788887 699999999999999999998 7788899999999877443
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=1.1e-11 Score=118.16 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=77.0
Q ss_pred CCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCC-cccccCCCCccChhhhcCCC
Q 038110 472 PQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFP 550 (667)
Q Consensus 472 ~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~ 550 (667)
-.|+.+.+.+....+..+|..+ .++++|++|+|++|.++.+| .++++++|++|++++ .+..+| ..+..++
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~-------~~~~~~~ 93 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIE-------NLDAVAD 93 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCS-------SHHHHHH
T ss_pred cchheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccccc-------chhhcCC
Confidence 3455556655543336676655 88888888888888888888 888888888888888 777888 6777778
Q ss_pred CCCeEEeecCCCCCCCCCCcCCCCCCeeEEEec
Q 038110 551 NLTSLELEVNDANTLPRGGLFFEKPERYKILTG 583 (667)
Q Consensus 551 ~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~ 583 (667)
+|++|++++|.+..+| .+..+++|+.|++..+
T Consensus 94 ~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 94 TLEELWISYNQIASLS-GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEE
T ss_pred cCCEEECcCCcCCcCC-ccccCCCCCEEECCCC
Confidence 8888888888888877 4566777777776633
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.03 E-value=5.5e-10 Score=105.90 Aligned_cols=108 Identities=20% Similarity=0.306 Sum_probs=94.6
Q ss_pred cccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccE
Q 038110 448 RVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHT 525 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~ 525 (667)
...+++.|++.+|.+..+|... .+++|++|++++|.. ..++...|.++++|++|+|++|.++.+|. .++.+++|++
T Consensus 29 ~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcC--CEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence 4578999999999999888544 789999999999988 57777767999999999999999998865 6999999999
Q ss_pred EecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCC
Q 038110 526 LCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDAN 563 (667)
Q Consensus 526 L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~ 563 (667)
|+|++ .+..+|. ..+..+++|++|++++|.+.
T Consensus 107 L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 107 LSLHGNDISVVPE------GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCT------TTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCCCCeeCh------hhhhcCccccEEEeCCCCee
Confidence 99999 8888983 35889999999999998753
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.01 E-value=7.3e-11 Score=128.10 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=44.9
Q ss_pred cccceeEEEEeccCccc-----cCCC-CCCCCccEEEccCCCCccccccHHHHhCCC----CCcEEEcCCCCCc-----c
Q 038110 448 RVRHCTSIVILDVKTYV-----LPEV-MECPQLKLFSMPAEKNSFFAIPHNLFRSML----QVRVLDLTDMNLL-----S 512 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~----~Lr~L~L~~~~i~-----~ 512 (667)
..++++.|++.+|.+.. ++.. ..+++|++|++++|... ...+..++..+. +|++|+|++|.+. .
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC-hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 34566666666665542 2221 14566666666666543 223333444455 4666666666655 3
Q ss_pred CCccccCCCcccEEecCC
Q 038110 513 LPSSIGLLTNLHTLCLYG 530 (667)
Q Consensus 513 lP~si~~L~~L~~L~L~~ 530 (667)
+|..+..+++|++|++++
T Consensus 105 l~~~l~~~~~L~~L~Ls~ 122 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSD 122 (461)
T ss_dssp HHHHTTSCTTCCEEECCS
T ss_pred HHHHHccCCceeEEECCC
Confidence 456666666666666665
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=1.5e-09 Score=101.35 Aligned_cols=111 Identities=22% Similarity=0.259 Sum_probs=95.6
Q ss_pred cccceeEEEEeccCccccCCC--CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLPEV--MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLH 524 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~ 524 (667)
..++++.|.+.+|.+..++.. ..+++|++|++++|.. ..+|...|.++++|++|+|++|.++.+|.. ++.+.+|+
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI--QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc--eEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 457899999999999888764 3789999999999987 678887779999999999999999998775 68999999
Q ss_pred EEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCC
Q 038110 525 TLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLP 566 (667)
Q Consensus 525 ~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP 566 (667)
+|++++ .+..+|. ..+..+++|++|++++|.+...+
T Consensus 104 ~L~l~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 104 ELALDTNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp EEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCBCCCH
T ss_pred EEECcCCcceEeCH------HHhcCCcccCEEEecCCCeeccC
Confidence 999999 8888882 34688999999999999865443
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=9.1e-10 Score=102.07 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=67.3
Q ss_pred eEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCcccEEecCC-
Q 038110 453 TSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHTLCLYG- 530 (667)
Q Consensus 453 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~~L~L~~- 530 (667)
+.+++++|.+..+|... .++|++|++++|.. ..+++..|.++++|++|+|++|.++.+|.. +..+.+|++|+|++
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45666667676666543 36677777777766 445444447777777777777777766654 46677777777776
Q ss_pred cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCC
Q 038110 531 GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLP 566 (667)
Q Consensus 531 ~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP 566 (667)
.+..+|. ..+.++++|++|++++|.+...+
T Consensus 89 ~l~~~~~------~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPR------GAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCT------TTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCH------HHhcCCCCCCEEEeCCCCCCCCc
Confidence 6666661 23666777777777776655444
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=1.1e-09 Score=103.60 Aligned_cols=106 Identities=24% Similarity=0.293 Sum_probs=91.1
Q ss_pred ccceeEEEEeccCccccCCC---CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCccc
Q 038110 449 VRHCTSIVILDVKTYVLPEV---MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLH 524 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~~---~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~ 524 (667)
..+++.|.+.+|.+..++.. ..+++|++|++++|.. ..+++..|.++++|++|+|++|.++.+|. .++.+++|+
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC--CCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 45899999999999888763 3799999999999988 45544445999999999999999998765 589999999
Q ss_pred EEecCC-ccccc-CCCCccChhhhcCCCCCCeEEeecCCCC
Q 038110 525 TLCLYG-GVGVV-DGVKNASLEELKHFPNLTSLELEVNDAN 563 (667)
Q Consensus 525 ~L~L~~-~l~~L-P~~~~~~~~~l~~L~~L~~L~l~~~~l~ 563 (667)
+|+|++ .+..+ | ..+..+++|++|++++|.+.
T Consensus 106 ~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 106 TLNLYDNQISCVMP-------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EEECCSSCCCEECT-------TSSTTCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCeeCH-------HHhhcCCCCCEEEeCCCCcc
Confidence 999999 77766 5 78999999999999999865
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.94 E-value=9.1e-11 Score=127.32 Aligned_cols=198 Identities=14% Similarity=0.053 Sum_probs=116.6
Q ss_pred ccceeEEEEeccCccccCC-----CC--CCCCccEEEccCCCCccc----cccHHHHhCCCCCcEEEcCCCCCccC----
Q 038110 449 VRHCTSIVILDVKTYVLPE-----VM--ECPQLKLFSMPAEKNSFF----AIPHNLFRSMLQVRVLDLTDMNLLSL---- 513 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~-----~~--~~~~Lr~L~l~~~~~~~~----~lp~~~~~~l~~Lr~L~L~~~~i~~l---- 513 (667)
.+++++|++.+|.+..... .. ..++|++|++++|... . .++..+ ..+++|++|+|++|.+...
T Consensus 169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT-SDNCRDLCGIV-ASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB-TTHHHHHHHHH-HHCTTCCEEECCSSBCHHHHHHH
T ss_pred CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc-HHHHHHHHHHH-HhCCCccEEeccCCcCChHHHHH
Confidence 3567777777776533211 01 2457777777777653 2 134443 6777777777777766532
Q ss_pred -Ccc-ccCCCcccEEecCC-cccc-----cCCCCccChhhhcCCCCCCeEEeecCCCCCCC-----CCCc-CCCCCCeeE
Q 038110 514 -PSS-IGLLTNLHTLCLYG-GVGV-----VDGVKNASLEELKHFPNLTSLELEVNDANTLP-----RGGL-FFEKPERYK 579 (667)
Q Consensus 514 -P~s-i~~L~~L~~L~L~~-~l~~-----LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP-----~~~~-~l~~L~~l~ 579 (667)
++. +..+++|++|++++ .+.. +| ..+.++++|++|++++|.+...+ ..+. ..++|+.|+
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLC-------RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-------HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHH-------HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 222 23567777777777 4443 56 66777888888888887764321 1111 235777777
Q ss_pred EEecCccCC-----CcccccccccceEEeecCccccc-hHHHHHH----hhhcceeecccccccccc-----ccchhhhh
Q 038110 580 ILTGHRWSR-----GFYRSSNKSYRSFRIDLDANVRL-KDRLVVQ----LRGIEELSLAGLLDQDIK-----NFVNELVK 644 (667)
Q Consensus 580 ~~~~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~----l~~L~~L~L~~~~~~~~~-----~~~~~l~~ 644 (667)
+..+.-... +........++.+.++.+..... ...+... .++|+.|+|++| .+. .+|..+
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n---~i~~~~~~~l~~~l-- 394 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC---DVSDSSCSSLAATL-- 394 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS---CCCHHHHHHHHHHH--
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC---CCChhhHHHHHHHH--
Confidence 664431111 11111235567777777544332 2222222 348899999888 333 678788
Q ss_pred ccCCCccEEEeecCCC
Q 038110 645 VGSSQLKYLQIEGYRG 660 (667)
Q Consensus 645 ~~l~~L~~L~l~~~~~ 660 (667)
..+++|++|++++|+-
T Consensus 395 ~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 395 LANHSLRELDLSNNCL 410 (461)
T ss_dssp HHCCCCCEEECCSSSC
T ss_pred HhCCCccEEECCCCCC
Confidence 7789999999998864
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=2.3e-09 Score=99.66 Aligned_cols=100 Identities=18% Similarity=0.251 Sum_probs=86.5
Q ss_pred ccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-CccccCCCcccEEecCC-cccccCCCCccChhhhcCCCC
Q 038110 474 LKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPN 551 (667)
Q Consensus 474 Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~ 551 (667)
-+.++++++.. ..+|..+ ..+|++|+|++|.+..+ |..++++.+|++|+|++ .+..+|. ..|.++++
T Consensus 14 ~~~l~~~~n~l--~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIRL--ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT------GVFDKLTQ 82 (174)
T ss_dssp SSEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTT
T ss_pred CcEEEeCCCCC--CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh------hHhCCcch
Confidence 36889998877 7899866 38999999999999988 66799999999999999 8999982 34689999
Q ss_pred CCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecC
Q 038110 552 LTSLELEVNDANTLPRG-GLFFEKPERYKILTGH 584 (667)
Q Consensus 552 L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~ 584 (667)
|++|++++|.+..+|.. +..+++|+.|++..+.
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence 99999999999999987 6789999999887444
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=3e-09 Score=98.55 Aligned_cols=101 Identities=22% Similarity=0.259 Sum_probs=86.7
Q ss_pred CccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-CccccCCCcccEEecCC-cccccCCCCccChhhhcCCC
Q 038110 473 QLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFP 550 (667)
Q Consensus 473 ~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~ 550 (667)
..+.++++++.. ..+|..+ .++|++|+|++|.++.+ |..++.+.+|++|+|++ .+..+|. ..|.+++
T Consensus 10 ~~~~l~~s~n~l--~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKSL--ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA------GVFDKLT 78 (170)
T ss_dssp ETTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT------TTTTTCT
T ss_pred CCCEEEeCCCCc--CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh------hhccCCC
Confidence 357899999887 6788765 48999999999999988 66799999999999999 8889982 3468999
Q ss_pred CCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecC
Q 038110 551 NLTSLELEVNDANTLPRG-GLFFEKPERYKILTGH 584 (667)
Q Consensus 551 ~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~ 584 (667)
+|++|++++|.+..+|.. +..+++|+.|++..+.
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 999999999999999986 6789999999887443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.80 E-value=5.4e-11 Score=113.41 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=69.0
Q ss_pred ccccceeEEEEeccCccccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEE
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTL 526 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L 526 (667)
..+++++.|++.+|.+..+|....+++|++|++++|.. ..+|..+ ..+++|++|+|++|.++.+| .++.+++|++|
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l--~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI--KKIENLD-AVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEE--CSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred hcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCc--ccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 34556777777777666666333566777777776655 4566543 56667777777777776666 56667777777
Q ss_pred ecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCC
Q 038110 527 CLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANT 564 (667)
Q Consensus 527 ~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~ 564 (667)
++++ .+..+|. +..+.++++|++|++++|.+..
T Consensus 121 ~l~~N~i~~~~~-----~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 121 YMSNNKITNWGE-----IDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EESEEECCCHHH-----HHHHTTTTTCSEEEECSCHHHH
T ss_pred ECCCCcCCchhH-----HHHHhcCCCCCEEEecCCcccc
Confidence 7766 5555540 0256667777777777766543
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.80 E-value=5.4e-09 Score=117.13 Aligned_cols=198 Identities=12% Similarity=0.091 Sum_probs=98.2
Q ss_pred ccceeEEEEeccCccccCC-----C-CCCCCccEEEccCCCCc---cccccHHHHhCCCCCcEEEcCCCCCccCCccccC
Q 038110 449 VRHCTSIVILDVKTYVLPE-----V-MECPQLKLFSMPAEKNS---FFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGL 519 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~~-----~-~~~~~Lr~L~l~~~~~~---~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~ 519 (667)
.++++.|++.+|.+..... . ..+++|++|++++|... ...++. ++.++++|++|+|++|.+..+|..+++
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 3455666665554322111 0 13556666666555441 011222 235566666666666666666666666
Q ss_pred CCcccEEecCC-----cccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCCCcCCCCCCeeEEEecCcc--CCCccc
Q 038110 520 LTNLHTLCLYG-----GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRGGLFFEKPERYKILTGHRW--SRGFYR 592 (667)
Q Consensus 520 L~~L~~L~L~~-----~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~~~~--~~~~~~ 592 (667)
+++|++|+++. .....+ ..+..+++|+.|+++++....+|..+..+++|+.|++..+... .+....
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~-------~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKY-------MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSS-------SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred hhHHHhhcccccccccchHHHH-------HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 66666666653 112222 4455666666666666555556655556667777766533300 000112
Q ss_pred ccccccceEEeecCccccchHHHHHHhhhcceeeccc----------ccccccc--ccchhhhhccCCCccEEEeecC
Q 038110 593 SSNKSYRSFRIDLDANVRLKDRLVVQLRGIEELSLAG----------LLDQDIK--NFVNELVKVGSSQLKYLQIEGY 658 (667)
Q Consensus 593 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~----------~~~~~~~--~~~~~l~~~~l~~L~~L~l~~~ 658 (667)
.....++.+.+..+........+...+++|++|+|++ | +... .++... ..+++|++|+++.+
T Consensus 315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~--~~~~~~~~~~l~--~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE--GLVSQRGLIALA--QGCQELEYMAVYVS 388 (592)
T ss_dssp TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT--CCCCHHHHHHHH--HHCTTCSEEEEEES
T ss_pred HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccccc--CccCHHHHHHHH--hhCccCeEEEeecC
Confidence 3334566666653222122233334456777777773 3 1221 122222 45777777777443
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.80 E-value=2.4e-09 Score=119.99 Aligned_cols=198 Identities=10% Similarity=-0.037 Sum_probs=128.5
Q ss_pred cccceeEEEEeccCccccC-----CC-CCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCC----ccCCccc
Q 038110 448 RVRHCTSIVILDVKTYVLP-----EV-MECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNL----LSLPSSI 517 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~l~-----~~-~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i----~~lP~si 517 (667)
..++++.|.+.+|.+..+. .. ..+++|++|.+.+|.. ..+|.. +.++++|+.|+++++.. ...+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI--LELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG--GGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH--HHHHHH-HhhhhHHHhhcccccccccchHHHHHHh
Confidence 4578888988888765322 11 1578899999988766 457754 48899999999885421 2456678
Q ss_pred cCCCcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCCCC--CCCCcCCCCCCeeEEEecC-ccCCCcccc
Q 038110 518 GLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDANTL--PRGGLFFEKPERYKILTGH-RWSRGFYRS 593 (667)
Q Consensus 518 ~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~l--P~~~~~l~~L~~l~~~~~~-~~~~~~~~~ 593 (667)
+.+.+|+.|+++. ....+| ..+..+++|++|++++|.+... +..+..+++|+.|.+..+- ...+.....
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~-------~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMP-------ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGG-------GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred hccccccccCccccchhHHH-------HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHH
Confidence 8888899998887 566677 7778888999999988875321 1223578888888887221 111222223
Q ss_pred cccccceEEeec----------Cccccc--hHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEEeecC
Q 038110 594 SNKSYRSFRIDL----------DANVRL--KDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQIEGY 658 (667)
Q Consensus 594 ~~~~l~~l~l~~----------~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~ 658 (667)
....++.+.+.. .+.... ...+...+++|++|++.++ .-....+..+. ..+++|+.|++++|
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~l~~~~~~~l~-~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS--DITNESLESIG-TYLKNLCDFRLVLL 413 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES--CCCHHHHHHHH-HHCCSCCEEEEEEC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC--CccHHHHHHHH-hhCCCCcEEEEeec
Confidence 345577888883 222221 2333445678999998666 32333455552 34788999999853
No 142
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.71 E-value=1.4e-06 Score=92.73 Aligned_cols=222 Identities=15% Similarity=0.085 Sum_probs=140.5
Q ss_pred ccccchHHHHHHHHHhc------C---C--------------CCcHHHHHHHHHhccC---CCCCE-EEEEEeCCCCCHH
Q 038110 159 EAFESRMSTLNDILGAL------K---N--------------PDTTLAKEVAWKAEND---KLFDQ-AVFAEVSQSHDIR 211 (667)
Q Consensus 159 ~~~~gr~~~~~~i~~~l------~---~--------------~~TtLa~~vy~~~~~~---~~F~~-~~wv~vs~~~~~~ 211 (667)
..++||+.+++.+..++ . . ||||||+.+++..... ..|+. .+|+......+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 45889999998887776 1 1 3599999999876421 12333 6788876777899
Q ss_pred HHHHHHHHHhCCCCCC--CChhHHHH-HHHHHh-cCCeEEEEEeCCCCcc--------cccccCCCcCCC---C--CCcE
Q 038110 212 KIQGEIADKLGLTFHE--ESESGRAS-LCNQLK-KNKTILMILDNIWENL--------DLLAIGIPHGND---H--KGCK 274 (667)
Q Consensus 212 ~i~~~i~~~l~~~~~~--~~~~~~~~-l~~~L~-~~kr~LlVLDdvw~~~--------~~~~l~~~~~~~---~--~gs~ 274 (667)
.++..++.+++..... ....+... +.+.+. .+++++|||||+|... .+..+...+... + ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999999765331 11222223 566653 2679999999998742 222222222111 2 3345
Q ss_pred EEEecCChhhhhhc--------cCCcceEecCCCCHHHHHHHHH-----------------HHHHHHhC------CcchH
Q 038110 275 ILLTARSEDTLSRK--------MDSKQNFSVGILKEEEAWSGEF-----------------KWVAKECA------GLPVS 323 (667)
Q Consensus 275 iivTTr~~~va~~~--------~~~~~~~~l~~L~~~~s~~Lf~-----------------~~i~~~c~------GlPLa 323 (667)
||+||+...+.... ......+.+.+++.++.+++|. ..|++.|+ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 88788765532100 1112239999999999999995 57888999 99976
Q ss_pred HHHHHHH-Hc-----cC---ChHHHHHHHHHhc-----CCCCcCchHHHHHHHHHHhhh-----hcccHHHHHHHH
Q 038110 324 IVTVSRA-LR-----NK---SLFEWKDALQQLR-----RPISTNFKDELKQIFLLIGYT-----YVAFIDDLIWYS 380 (667)
Q Consensus 324 i~~~g~~-L~-----~k---~~~~W~~~l~~l~-----~~~~~~l~~~lk~cfly~s~f-----~~i~~~~Li~~W 380 (667)
+..+... .. +. +.+.+..++.... ...+..+|.+.+.++..++.+ ..+...++...+
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~ 337 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRY 337 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 5555432 21 11 5566666665542 233456799999999888875 245555555544
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=3.2e-08 Score=102.10 Aligned_cols=197 Identities=12% Similarity=0.074 Sum_probs=124.0
Q ss_pred ccceeEEEEeccCcc--------------------ccCCCC--C--------CCCccEEEccCCCCccccccHHHHhCCC
Q 038110 449 VRHCTSIVILDVKTY--------------------VLPEVM--E--------CPQLKLFSMPAEKNSFFAIPHNLFRSML 498 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~--------------------~l~~~~--~--------~~~Lr~L~l~~~~~~~~~lp~~~~~~l~ 498 (667)
+.+++.|++++|.+. .+|... . +++|+.|.+.+ .. ..+++..|.+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i--~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KI--KNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TC--CEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cc--cchhHHHhhcCc
Confidence 567888888888776 223222 4 78888888877 33 678888788888
Q ss_pred CCcEEEcCCCCCccCCc-cccCCCcccEEecCC-----cccccCC---CCccC-----------------------hh--
Q 038110 499 QVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYG-----GVGVVDG---VKNAS-----------------------LE-- 544 (667)
Q Consensus 499 ~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~-----~l~~LP~---~~~~~-----------------------~~-- 544 (667)
+|+.|++++|.+..+|+ .|..+.++.++.+.. ....+.. ..|.. +.
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 88888888888776644 466666666665544 0111100 00000 00
Q ss_pred ---------------hh-cCCCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEEecCccCCCc-ccccccccc-eEEeec
Q 038110 545 ---------------EL-KHFPNLTSLELEVNDANTLPRG-GLFFEKPERYKILTGHRWSRGF-YRSSNKSYR-SFRIDL 605 (667)
Q Consensus 545 ---------------~l-~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~l~-~l~l~~ 605 (667)
.+ ..+++|+.|++++|++..+|.. +.++.+|+.+.+..+ -..++. .......++ .+.+..
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 00 1278999999999999999987 568889999977633 122221 122334455 666665
Q ss_pred CccccchHHHHHHhhhcceeeccccccccccccchhhhhccCCCccEEE
Q 038110 606 DANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGSSQLKYLQ 654 (667)
Q Consensus 606 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l~~L~~L~ 654 (667)
......+.....+++|+.|++..+ .+..++.... .++++|+.|+
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n---~i~~I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGD---KITTLGDELF-GNGVPSKLIY 327 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSS---CCCEECTTTT-CTTCCCCEEE
T ss_pred -cceEEchhhhhCCccCCEEEeCCC---ccCccchhhh-cCCcchhhhc
Confidence 444444445556689999999887 5666666432 6677777765
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.62 E-value=7.4e-08 Score=100.14 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=62.8
Q ss_pred EEEecc-CccccCCCCCCCCccEEEccC-CCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccEEecCC-
Q 038110 455 IVILDV-KTYVLPEVMECPQLKLFSMPA-EKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYG- 530 (667)
Q Consensus 455 L~l~~~-~~~~l~~~~~~~~Lr~L~l~~-~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~- 530 (667)
+...++ .+..+|....+++|+.|++++ |.. ..+|...|++|++|++|+|++|.|..+|+ .|++|.+|++|+|++
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 566666633566677777765 555 55665555777777777777777776543 567777777777777
Q ss_pred cccccCCCCccChhhhcCCCCCCeEEeecCCCCC
Q 038110 531 GVGVVDGVKNASLEELKHFPNLTSLELEVNDANT 564 (667)
Q Consensus 531 ~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~ 564 (667)
.+..+| ..+....+|+.|++.+|.+..
T Consensus 91 ~l~~~~-------~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLS-------WKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCC-------STTTCSCCCCEEECCSSCCCC
T ss_pred ccceeC-------HHHcccCCceEEEeeCCCccC
Confidence 666666 333222237777777766543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=9.1e-08 Score=99.45 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=59.2
Q ss_pred EEccCC-CCccccccHHHHhCCCCCcEEEcCC-CCCccCC-ccccCCCcccEEecCC-cccccCCCCccChhhhcCCCCC
Q 038110 477 FSMPAE-KNSFFAIPHNLFRSMLQVRVLDLTD-MNLLSLP-SSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNL 552 (667)
Q Consensus 477 L~l~~~-~~~~~~lp~~~~~~l~~Lr~L~L~~-~~i~~lP-~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L 552 (667)
++++++ .. ..+|. + +.+.+|++|+|++ |.+..+| ..|+.|.+|++|+|++ .+..+|. ..|++|++|
T Consensus 13 v~~~~~n~l--~~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~l~~L 82 (347)
T 2ifg_A 13 LRCTRDGAL--DSLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP------DAFHFTPRL 82 (347)
T ss_dssp EECCSSCCC--TTTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT------TGGGSCSCC
T ss_pred EEcCCCCCC--CccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH------HHhcCCcCC
Confidence 455554 33 45666 3 6667777777764 6666665 3566677777777766 5665552 456667777
Q ss_pred CeEEeecCCCCCCCCCCcCCCCCCeeEEEec
Q 038110 553 TSLELEVNDANTLPRGGLFFEKPERYKILTG 583 (667)
Q Consensus 553 ~~L~l~~~~l~~lP~~~~~l~~L~~l~~~~~ 583 (667)
++|+|++|++..+|..+.....|+.|.+..+
T Consensus 83 ~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 83 SRLNLSFNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred CEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence 7777777776666665433223666665543
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.54 E-value=8.6e-09 Score=115.51 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=41.9
Q ss_pred ccceeEEEEeccCccccC--CCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCcc-----CCccccCC
Q 038110 449 VRHCTSIVILDVKTYVLP--EVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLS-----LPSSIGLL 520 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~--~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-----lP~si~~L 520 (667)
.+++++|.+.+|.+.... ... .+++|++|.+.+|..........++.++++|++|+|++|.++. ++.-...+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 346667777666543211 111 3567777777666321011122233566777777777666442 22223345
Q ss_pred CcccEEecCC
Q 038110 521 TNLHTLCLYG 530 (667)
Q Consensus 521 ~~L~~L~L~~ 530 (667)
++|++|++++
T Consensus 184 ~~L~~L~l~~ 193 (594)
T 2p1m_B 184 TSLVSLNISC 193 (594)
T ss_dssp CCCCEEECTT
T ss_pred CcCcEEEecc
Confidence 5666666665
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.45 E-value=4.1e-08 Score=109.92 Aligned_cols=206 Identities=13% Similarity=0.069 Sum_probs=113.4
Q ss_pred cccceeEEEEeccCccc-----cCCCC-CCCCccEEEccCCCCcc-ccccHHHHhCCCCCcEEEcCCC-CCccCCccccC
Q 038110 448 RVRHCTSIVILDVKTYV-----LPEVM-ECPQLKLFSMPAEKNSF-FAIPHNLFRSMLQVRVLDLTDM-NLLSLPSSIGL 519 (667)
Q Consensus 448 ~~~~lr~L~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~~-~~lp~~~~~~l~~Lr~L~L~~~-~i~~lP~si~~ 519 (667)
..++++.|++.+|.+.. ++... .+++|++|+++++...+ ......++.++++|++|+|++| .+..+|..+.+
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 45678888887776432 22222 56788888887775110 1111223356788888888887 45567777777
Q ss_pred CCcccEEecCC--------cccccC-------------C---C-CccChhhhcCCCCCCeEEeecCCCCC--CCCCCcCC
Q 038110 520 LTNLHTLCLYG--------GVGVVD-------------G---V-KNASLEELKHFPNLTSLELEVNDANT--LPRGGLFF 572 (667)
Q Consensus 520 L~~L~~L~L~~--------~l~~LP-------------~---~-~~~~~~~l~~L~~L~~L~l~~~~l~~--lP~~~~~l 572 (667)
+++|++|++.. .+..+| + . ....+..+..+++|++|++++|.+.. ++..+.++
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 77777777542 011111 0 0 00001333467888888888887542 11113467
Q ss_pred CCCCeeEEEecCcc-CCCcccccccccceEEeec--------Ccccc--chHHHHHHhhhcceeeccccccccccccchh
Q 038110 573 EKPERYKILTGHRW-SRGFYRSSNKSYRSFRIDL--------DANVR--LKDRLVVQLRGIEELSLAGLLDQDIKNFVNE 641 (667)
Q Consensus 573 ~~L~~l~~~~~~~~-~~~~~~~~~~~l~~l~l~~--------~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 641 (667)
++|+.|.+..+-.. .+..+......++.+.|.. ++... ....+...+++|+.|.+.++ .-....+..
T Consensus 314 ~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~--~l~~~~~~~ 391 (594)
T 2p1m_B 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR--QMTNAALIT 391 (594)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES--CCCHHHHHH
T ss_pred CCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC--CcCHHHHHH
Confidence 88888888744110 1111122245577777732 12211 12233344578999977666 222223344
Q ss_pred hhhccCCCccEEEee
Q 038110 642 LVKVGSSQLKYLQIE 656 (667)
Q Consensus 642 l~~~~l~~L~~L~l~ 656 (667)
+. ..+++|+.|+++
T Consensus 392 l~-~~~~~L~~L~L~ 405 (594)
T 2p1m_B 392 IA-RNRPNMTRFRLC 405 (594)
T ss_dssp HH-HHCTTCCEEEEE
T ss_pred HH-hhCCCcceeEee
Confidence 42 458999999999
No 148
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.37 E-value=2.1e-06 Score=89.17 Aligned_cols=205 Identities=13% Similarity=0.132 Sum_probs=121.8
Q ss_pred CcccccchHHHHHHHHHhcC-----------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCC-----CCHHHHHHHHHHH
Q 038110 157 DYEAFESRMSTLNDILGALK-----------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQS-----HDIRKIQGEIADK 220 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~-----------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~i~~~ 220 (667)
....++||+++++.+.+ +. .|||||++.+.+... . ..+|+..... .+...+...+.+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLELQKE 84 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHHHHH
Confidence 34568999999999988 63 367999999998764 2 2578887642 3445555555443
Q ss_pred hCC-------------CC-----CC----C-----ChhHHHHHHHHHhc-C-CeEEEEEeCCCCcc-----cccccCCCc
Q 038110 221 LGL-------------TF-----HE----E-----SESGRASLCNQLKK-N-KTILMILDNIWENL-----DLLAIGIPH 266 (667)
Q Consensus 221 l~~-------------~~-----~~----~-----~~~~~~~l~~~L~~-~-kr~LlVLDdvw~~~-----~~~~l~~~~ 266 (667)
+.. .. .. . .......+.+.+.. . ++++|||||++... +|..+...+
T Consensus 85 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~ 164 (357)
T 2fna_A 85 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYA 164 (357)
T ss_dssp HHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHH
T ss_pred HHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHH
Confidence 310 00 00 0 00111124444432 1 48999999997632 222221222
Q ss_pred CCCCCCcEEEEecCChhhhhh----------ccCC-cceEecCCCCHHHHHHHHH-------------HHHHHHhCCcch
Q 038110 267 GNDHKGCKILLTARSEDTLSR----------KMDS-KQNFSVGILKEEEAWSGEF-------------KWVAKECAGLPV 322 (667)
Q Consensus 267 ~~~~~gs~iivTTr~~~va~~----------~~~~-~~~~~l~~L~~~~s~~Lf~-------------~~i~~~c~GlPL 322 (667)
.+...+.++|+|++....... ..+. ...+.+.+|+.+++.+++. ..|+..|+|.|+
T Consensus 165 ~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G~P~ 244 (357)
T 2fna_A 165 YDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPG 244 (357)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSCHH
T ss_pred HHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHH
Confidence 112246789999997653211 0111 2579999999999999986 578999999999
Q ss_pred HHHHHHHHHcc-CChHHHHH-HHH--------HhcCCCC--cCchHHHHHHHHHHhh
Q 038110 323 SIVTVSRALRN-KSLFEWKD-ALQ--------QLRRPIS--TNFKDELKQIFLLIGY 367 (667)
Q Consensus 323 ai~~~g~~L~~-k~~~~W~~-~l~--------~l~~~~~--~~l~~~lk~cfly~s~ 367 (667)
++..++..+.. .+...|.. +.+ .+....+ ..+|+..+..+..+|+
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 245 WLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 99999987753 24333321 111 1111100 1456677777776665
No 149
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.36 E-value=1.6e-06 Score=89.77 Aligned_cols=168 Identities=11% Similarity=0.035 Sum_probs=108.3
Q ss_pred CcccccchHHHHHHHHHhcC------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCC------CHHHHHHHHH
Q 038110 157 DYEAFESRMSTLNDILGALK------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSH------DIRKIQGEIA 218 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~------~~~~i~~~i~ 218 (667)
....++||+.+++.+.+++. .|||||++.+.+... .+|+++.... +...+++.+.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIKELQ 82 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHHHHH
Confidence 34568999999999988763 357999999998641 6777765432 5667777777
Q ss_pred HHhCCC---------------CC-C--CChhH-HHH-HHHHHhcCCeEEEEEeCCCCccc---------ccccCCCcCCC
Q 038110 219 DKLGLT---------------FH-E--ESESG-RAS-LCNQLKKNKTILMILDNIWENLD---------LLAIGIPHGND 269 (667)
Q Consensus 219 ~~l~~~---------------~~-~--~~~~~-~~~-l~~~L~~~kr~LlVLDdvw~~~~---------~~~l~~~~~~~ 269 (667)
+.+... .. . ..... ... +.+.....++++|||||++.... +..+.... +.
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~~ 161 (350)
T 2qen_A 83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-DS 161 (350)
T ss_dssp HHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-HH
T ss_pred HHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-Hh
Confidence 665430 00 0 01111 112 44444322389999999987432 22222111 11
Q ss_pred CCCcEEEEecCChhhhhhc----------cCC-cceEecCCCCHHHHHHHHH---------------HHHHHHhCCcchH
Q 038110 270 HKGCKILLTARSEDTLSRK----------MDS-KQNFSVGILKEEEAWSGEF---------------KWVAKECAGLPVS 323 (667)
Q Consensus 270 ~~gs~iivTTr~~~va~~~----------~~~-~~~~~l~~L~~~~s~~Lf~---------------~~i~~~c~GlPLa 323 (667)
..+.++|+|++...+.... .+. ...+.+.+|+.+|+.+++. ..|...|+|.|++
T Consensus 162 ~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 162 LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGW 241 (350)
T ss_dssp CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHH
T ss_pred cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHH
Confidence 2467899998875431110 111 2479999999999999876 6788999999999
Q ss_pred HHHHHHHHc
Q 038110 324 IVTVSRALR 332 (667)
Q Consensus 324 i~~~g~~L~ 332 (667)
+..++..+.
T Consensus 242 l~~~~~~~~ 250 (350)
T 2qen_A 242 LVVFGVEYL 250 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987654
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.14 E-value=1.3e-05 Score=84.71 Aligned_cols=98 Identities=11% Similarity=0.205 Sum_probs=51.8
Q ss_pred ceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecC
Q 038110 451 HCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLY 529 (667)
Q Consensus 451 ~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~ 529 (667)
+++.+.+..+ +..++... .-.+|+.+.+.. .. ..++...|.++.+|+.++|++|.++.+|.......+|+.+.|.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l--~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TL--EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TC--CEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-Cc--cEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 3555554432 33333221 113466666654 11 4555555667777777777766666666554445666666665
Q ss_pred CcccccCCCCccChhhhcCCCCCCeEEee
Q 038110 530 GGVGVVDGVKNASLEELKHFPNLTSLELE 558 (667)
Q Consensus 530 ~~l~~LP~~~~~~~~~l~~L~~L~~L~l~ 558 (667)
..+..++. ..|.++++|+.+++.
T Consensus 212 ~~l~~I~~------~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 212 VTLKEIGS------QAFLKTSQLKTIEIP 234 (401)
T ss_dssp TTCCEECT------TTTTTCTTCCCEECC
T ss_pred Cchheehh------hHhhCCCCCCEEecC
Confidence 54555543 344455555555554
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.12 E-value=2.8e-07 Score=96.52 Aligned_cols=125 Identities=15% Similarity=0.052 Sum_probs=81.0
Q ss_pred ccceeEEEEeccCccccC-----CCC--CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccC-Cccc---
Q 038110 449 VRHCTSIVILDVKTYVLP-----EVM--ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSL-PSSI--- 517 (667)
Q Consensus 449 ~~~lr~L~l~~~~~~~l~-----~~~--~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-P~si--- 517 (667)
.+.++.|++.+|.+.... ... ..++|+.|++++|... ..-...++..+++|++|+|++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC-HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC-HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 356788888888775321 111 3468999999888764 222333445667889999999988632 2222
Q ss_pred --cCCCcccEEecCC-cc-----cccCCCCccChhhhcCCCCCCeEEeecCCCCCC-----CCCCcCCCCCCeeEEE
Q 038110 518 --GLLTNLHTLCLYG-GV-----GVVDGVKNASLEELKHFPNLTSLELEVNDANTL-----PRGGLFFEKPERYKIL 581 (667)
Q Consensus 518 --~~L~~L~~L~L~~-~l-----~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~l-----P~~~~~l~~L~~l~~~ 581 (667)
....+|++|+|++ .+ ..++ ..+..+++|++|++++|.+... +..+...++|+.|++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~-------~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLM-------EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHH-------HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHH-------HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 2457789999988 33 3455 6667888899999998876532 2333345566666655
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.07 E-value=3.3e-07 Score=96.03 Aligned_cols=156 Identities=14% Similarity=0.073 Sum_probs=92.0
Q ss_pred CCCccEEEccCCCCcccc----ccHHHHhCCCCCcEEEcCCCCCcc--CCccccCCCcccEEecCC-cccccCCCCccCh
Q 038110 471 CPQLKLFSMPAEKNSFFA----IPHNLFRSMLQVRVLDLTDMNLLS--LPSSIGLLTNLHTLCLYG-GVGVVDGVKNASL 543 (667)
Q Consensus 471 ~~~Lr~L~l~~~~~~~~~----lp~~~~~~l~~Lr~L~L~~~~i~~--lP~si~~L~~L~~L~L~~-~l~~LP~~~~~~~ 543 (667)
.++|++|++++|... .. +...+.....+|++|+|++|.+.. ++.-...+.+|++|+|++ .+...+. ..+
T Consensus 71 ~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~---~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC---KDL 146 (372)
T ss_dssp HTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH---HHH
T ss_pred HhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH---HHH
Confidence 568999999999864 21 112221133799999999999863 222233567899999998 4433220 000
Q ss_pred -hhh-cCCCCCCeEEeecCCCCC-----CCCCCcCCCCCCeeEEEecCccC-----CCcccccccccceEEeecCccccc
Q 038110 544 -EEL-KHFPNLTSLELEVNDANT-----LPRGGLFFEKPERYKILTGHRWS-----RGFYRSSNKSYRSFRIDLDANVRL 611 (667)
Q Consensus 544 -~~l-~~L~~L~~L~l~~~~l~~-----lP~~~~~l~~L~~l~~~~~~~~~-----~~~~~~~~~~l~~l~l~~~~~~~~ 611 (667)
..+ ...++|++|++++|.++. ++..+...++|+.|+++.+.-.. +.........++.|.|+.+.....
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 233 356899999999998754 33334467889999877444111 011112223566677766544332
Q ss_pred h-HHHHH---Hhhhcceeecccc
Q 038110 612 K-DRLVV---QLRGIEELSLAGL 630 (667)
Q Consensus 612 ~-~~~~~---~l~~L~~L~L~~~ 630 (667)
. ..+.. ..++|++|+|++|
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHHHhCCCCCEEeccCC
Confidence 1 12222 2257788888777
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.04 E-value=1.3e-05 Score=84.75 Aligned_cols=193 Identities=13% Similarity=0.132 Sum_probs=107.6
Q ss_pred ccccceeEEEEeccCccccCCCC-CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCcc-ccCCCccc
Q 038110 447 SRVRHCTSIVILDVKTYVLPEVM-ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLH 524 (667)
Q Consensus 447 ~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~s-i~~L~~L~ 524 (667)
....+++.+.+..|.+..++... .+.+|+.+.+..+ . ..++...|.++.+|+.+++..+ ++.++.. |.+ .+|+
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l--~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-L--KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-C--CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred hCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-h--heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 34456777777766666665433 4567777777643 2 5666666777777777777764 5555543 333 6677
Q ss_pred EEecCCcccccCCCCccChhhhcCCCCCCeEEeecCCCC-----CCCCC-CcCCCCCCeeEEEecCccCCCc-ccccccc
Q 038110 525 TLCLYGGVGVVDGVKNASLEELKHFPNLTSLELEVNDAN-----TLPRG-GLFFEKPERYKILTGHRWSRGF-YRSSNKS 597 (667)
Q Consensus 525 ~L~L~~~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~-----~lP~~-~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~ 597 (667)
.+.+...+..++. ..|.++++|+.+++.++.+. .++.. +..+.+|+.+.+. +.-..+.. .......
T Consensus 252 ~i~lp~~i~~I~~------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~ 324 (401)
T 4fdw_A 252 TVKLPNGVTNIAS------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRK 324 (401)
T ss_dssp EEEEETTCCEECT------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCS
T ss_pred EEEeCCCccEECh------hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCC
Confidence 7777656666653 56777888888888776544 45554 4467777777554 11111111 1222234
Q ss_pred cceEEeecCccccchHHHHHHhhhcceeeccccccccccccchhhhhccC-CCccEEEeec
Q 038110 598 YRSFRIDLDANVRLKDRLVVQLRGIEELSLAGLLDQDIKNFVNELVKVGS-SQLKYLQIEG 657 (667)
Q Consensus 598 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~l-~~L~~L~l~~ 657 (667)
++.+.|.. +............ +|+.|.+.+| ....++.... .++ .++..|.+-.
T Consensus 325 L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n---~~~~l~~~~F-~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 325 VTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGT---TPPQVFEKVW-YGFPDDITVIRVPA 379 (401)
T ss_dssp CCEEEECT-TCCEECTTSSSSS-CCCEEEECCS---SCCBCCCSSC-CCSCTTCCEEEECG
T ss_pred ccEEEECc-cccEEcHHhCCCC-CCCEEEEcCC---CCcccccccc-cCCCCCccEEEeCH
Confidence 55555533 2323333333334 7777777777 2222332221 333 3566666644
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=6.9e-06 Score=84.46 Aligned_cols=100 Identities=16% Similarity=0.051 Sum_probs=83.9
Q ss_pred CCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCccc-EEecCCcccccCCCCccChhhhcC
Q 038110 471 CPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLH-TLCLYGGVGVVDGVKNASLEELKH 548 (667)
Q Consensus 471 ~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~-~L~L~~~l~~LP~~~~~~~~~l~~ 548 (667)
+++|++|++.+|.. ..+|+..|.++.+|+.|+|++| ++.+|+ .|.++.+|+ .|.+...+..++. ..|.+
T Consensus 225 ~~~L~~l~L~~n~i--~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~------~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNA--TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEF------GAFMG 295 (329)
T ss_dssp CTTCCEEECTTBCC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECT------TTTTT
T ss_pred cCCCeEEECCCCCc--ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEch------hhhhC
Confidence 78899999998776 7888888899999999999987 888865 588899999 9999887777764 67889
Q ss_pred CCCCCeEEeecCCCCCCCCC-CcCCCCCCeeE
Q 038110 549 FPNLTSLELEVNDANTLPRG-GLFFEKPERYK 579 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~ 579 (667)
+++|+.|+++.|.+..++.. +.++++|+.++
T Consensus 296 c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 99999999988899999886 55778888774
No 155
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.94 E-value=6.2e-05 Score=78.95 Aligned_cols=187 Identities=12% Similarity=0.010 Sum_probs=115.7
Q ss_pred ccccchHHHHHHHHHhcC------------------CCCcHHHHHHHHHhccC----CC--CCEEEEEEeCCCC-CHHHH
Q 038110 159 EAFESRMSTLNDILGALK------------------NPDTTLAKEVAWKAEND----KL--FDQAVFAEVSQSH-DIRKI 213 (667)
Q Consensus 159 ~~~~gr~~~~~~i~~~l~------------------~~~TtLa~~vy~~~~~~----~~--F~~~~wv~vs~~~-~~~~i 213 (667)
..++||+++++.+..++. .||||||+.+++...-. .. ....+|++.+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 458899999998886552 24699999999875311 11 2347788877766 88899
Q ss_pred HHHHHHHhCCCCC---CCChhHHHH-HHHHHhcCCeEEEEEeCCCCccc---ccccCCCcCCCCCCcEEEEecCChhhh-
Q 038110 214 QGEIADKLGLTFH---EESESGRAS-LCNQLKKNKTILMILDNIWENLD---LLAIGIPHGNDHKGCKILLTARSEDTL- 285 (667)
Q Consensus 214 ~~~i~~~l~~~~~---~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~~---~~~l~~~~~~~~~gs~iivTTr~~~va- 285 (667)
+..++.++.+... ......... +.+.+. .++.+|||||++.... .+.+...+.....+.+||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 9999988833211 111223233 777776 4555999999986421 222011111111577899999876321
Q ss_pred ---hhc-cCCcceEecCCCCHHHHHHHHH-----------------HHHHHHhC---Ccch-HHHHHHHHH--c---cC-
Q 038110 286 ---SRK-MDSKQNFSVGILKEEEAWSGEF-----------------KWVAKECA---GLPV-SIVTVSRAL--R---NK- 334 (667)
Q Consensus 286 ---~~~-~~~~~~~~l~~L~~~~s~~Lf~-----------------~~i~~~c~---GlPL-ai~~~g~~L--~---~k- 334 (667)
... ......+.+++++.++..++|. ..+++.|+ |.|- |+..+-.+. . ..
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 100 1112389999999999999987 45667777 7765 333333332 1 12
Q ss_pred ChHHHHHHHHHh
Q 038110 335 SLFEWKDALQQL 346 (667)
Q Consensus 335 ~~~~W~~~l~~l 346 (667)
+.+++..++...
T Consensus 259 ~~~~v~~~~~~~ 270 (384)
T 2qby_B 259 RKEHVDKAIVDY 270 (384)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 667777666654
No 156
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.93 E-value=5.8e-05 Score=73.26 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChhhh-hhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSEDTL-SRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~va-~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++.+||+||++.. ..++.+...+.....+.++|+||+..... .........+++.+++.++..+++.
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~ 204 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 204 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 56799999999763 45555554444445677888888765432 1112234689999999999999887
Q ss_pred ------HHHHHHhCCcchHHHHHHHHH
Q 038110 311 ------KWVAKECAGLPVSIVTVSRAL 331 (667)
Q Consensus 311 ------~~i~~~c~GlPLai~~~g~~L 331 (667)
..|++.|+|.|..+..+...+
T Consensus 205 ~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 205 HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 678889999998887765543
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.80 E-value=1.8e-05 Score=82.20 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=53.0
Q ss_pred CCCCccEEEccCCCCc--------cccccHHHHhCCCCCcEEEcCCCCCccCCccccCCCcccEEecCCcccccCCCCcc
Q 038110 470 ECPQLKLFSMPAEKNS--------FFAIPHNLFRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYGGVGVVDGVKNA 541 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~--------~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~si~~L~~L~~L~L~~~l~~LP~~~~~ 541 (667)
.+++|+.|.+.+.... ...++ .++..+++|+.|+|+++.-..+|. +. +.+|++|+|.. ..++. .
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~--~~l~~---~ 208 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIIS--GGLPD---S 208 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEEC--SBCCH---H
T ss_pred hcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEec--CCCCh---H
Confidence 5789999988654220 01233 455889999999999884235555 43 78999999876 22220 0
Q ss_pred Chhhh--cCCCCCCeEEeec
Q 038110 542 SLEEL--KHFPNLTSLELEV 559 (667)
Q Consensus 542 ~~~~l--~~L~~L~~L~l~~ 559 (667)
.+..+ .++++|++|+|+.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHHHccCCCCcEEEEec
Confidence 01233 3788999999864
No 158
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.80 E-value=0.00028 Score=73.90 Aligned_cols=208 Identities=13% Similarity=0.053 Sum_probs=126.6
Q ss_pred ccccchHHHHHHHHHhcC------------------CCCcHHHHHHHHHhccCC---CCC-EEEEEEeCCCCCHHHHHHH
Q 038110 159 EAFESRMSTLNDILGALK------------------NPDTTLAKEVAWKAENDK---LFD-QAVFAEVSQSHDIRKIQGE 216 (667)
Q Consensus 159 ~~~~gr~~~~~~i~~~l~------------------~~~TtLa~~vy~~~~~~~---~F~-~~~wv~vs~~~~~~~i~~~ 216 (667)
..++||+.+++.+..++. .||||+|+.+++...... ... ..+|++.....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 568899999999998872 145999999998763210 112 3678888888889999999
Q ss_pred HHHHhCCCCCCC--ChhHHHH-HHHHHh-cCCeEEEEEeCCCCccc----cccc---CCCcCCC--CCCcEEEEecCChh
Q 038110 217 IADKLGLTFHEE--SESGRAS-LCNQLK-KNKTILMILDNIWENLD----LLAI---GIPHGND--HKGCKILLTARSED 283 (667)
Q Consensus 217 i~~~l~~~~~~~--~~~~~~~-l~~~L~-~~kr~LlVLDdvw~~~~----~~~l---~~~~~~~--~~gs~iivTTr~~~ 283 (667)
++.+++...... ...+... +.+.+. .+++.+|||||++.... .+.+ ....... ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 999997643322 1222233 666663 25689999999987522 1222 1111111 34567788887653
Q ss_pred hh----hhc-cCCc-ceEecCCCCHHHHHHHHH-----------------HHHHHHhC---Ccc-hHHHHHHHHHc----
Q 038110 284 TL----SRK-MDSK-QNFSVGILKEEEAWSGEF-----------------KWVAKECA---GLP-VSIVTVSRALR---- 332 (667)
Q Consensus 284 va----~~~-~~~~-~~~~l~~L~~~~s~~Lf~-----------------~~i~~~c~---GlP-Lai~~~g~~L~---- 332 (667)
.. ... .... ..+.+.+++.++..+++. ..+++.++ |.| .++..+..+..
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAER 258 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 21 000 1111 478999999999999887 56778887 998 33333333321
Q ss_pred -c--C-ChHHHHHHHHHhcCC----CCcCchHHHHHHHHHHh
Q 038110 333 -N--K-SLFEWKDALQQLRRP----ISTNFKDELKQIFLLIG 366 (667)
Q Consensus 333 -~--k-~~~~W~~~l~~l~~~----~~~~l~~~lk~cfly~s 366 (667)
+ . +.+.+..++...... ....+|.+.+..++..+
T Consensus 259 ~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~ 300 (387)
T 2v1u_A 259 RREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIM 300 (387)
T ss_dssp TTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHH
Confidence 1 2 677777777664221 12334555555444444
No 159
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.74 E-value=0.00013 Score=76.46 Aligned_cols=188 Identities=13% Similarity=0.068 Sum_probs=114.1
Q ss_pred ccccchHHHHHHHHHhcCC------------------CCcHHHHHHHHHhccCCC-CCEEEEEEeCCCCCHHHHHHHHHH
Q 038110 159 EAFESRMSTLNDILGALKN------------------PDTTLAKEVAWKAENDKL-FDQAVFAEVSQSHDIRKIQGEIAD 219 (667)
Q Consensus 159 ~~~~gr~~~~~~i~~~l~~------------------~~TtLa~~vy~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~i~~ 219 (667)
..++||+.+++.+.+++.. ||||||+.+++....... -...+|+..+...+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999988752 359999999987642210 124678877676678888888888
Q ss_pred HhCCCCCCC--ChhHHHH-HHHHHhc-CCeEEEEEeCCCCcc------cccccCCCcCC-CCCCcEEEEecCChhhhhhc
Q 038110 220 KLGLTFHEE--SESGRAS-LCNQLKK-NKTILMILDNIWENL------DLLAIGIPHGN-DHKGCKILLTARSEDTLSRK 288 (667)
Q Consensus 220 ~l~~~~~~~--~~~~~~~-l~~~L~~-~kr~LlVLDdvw~~~------~~~~l~~~~~~-~~~gs~iivTTr~~~va~~~ 288 (667)
+++...... ...+... +.+.+.. +++.+||||+++... .+..+...+.. ...+..+|+||+........
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 876543211 1222233 6666642 448999999997642 12222211211 22345678888766432110
Q ss_pred -----cCC-cceEecCCCCHHHHHHHHH-----------------HHHHHHhC---CcchHHH-HHHHHHc-----c--C
Q 038110 289 -----MDS-KQNFSVGILKEEEAWSGEF-----------------KWVAKECA---GLPVSIV-TVSRALR-----N--K 334 (667)
Q Consensus 289 -----~~~-~~~~~l~~L~~~~s~~Lf~-----------------~~i~~~c~---GlPLai~-~~g~~L~-----~--k 334 (667)
... ...+.+++++.++..+++. ..+++.++ |.|..+. .+..+.. + .
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~ 259 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTK 259 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 011 1479999999999999987 45666676 8887433 3322221 1 2
Q ss_pred -ChHHHHHHHHHh
Q 038110 335 -SLFEWKDALQQL 346 (667)
Q Consensus 335 -~~~~W~~~l~~l 346 (667)
+.+.+..++...
T Consensus 260 i~~~~v~~a~~~~ 272 (386)
T 2qby_A 260 VKEEYVYMAKEEI 272 (386)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 566666665543
No 160
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.71 E-value=0.00038 Score=66.34 Aligned_cols=156 Identities=10% Similarity=0.055 Sum_probs=92.3
Q ss_pred CcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHHh
Q 038110 157 DYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDKLFD-QAVFAEVSQSHDIRKIQGEIADKL 221 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l 221 (667)
....++|++..++.+..++.. |||++|+.+++..... .+. ..+.+..+...+...+...+....
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccChHHHHHHHHHHh
Confidence 345678999999998887643 4699999999865321 121 234444444434333322222211
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChhhh-hhccCCcceEecC
Q 038110 222 GLTFHEESESGRASLCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSEDTL-SRKMDSKQNFSVG 298 (667)
Q Consensus 222 ~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~va-~~~~~~~~~~~l~ 298 (667)
.... ...+++.+||+||++.. ..++.+...+.....+.++|+||+..... .........+.+.
T Consensus 94 ~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 94 RTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp TSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred cccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecC
Confidence 1100 00256799999999765 33444443343344567888888775422 1112223489999
Q ss_pred CCCHHHHHHHHH---------------HHHHHHhCCcchHHHHH
Q 038110 299 ILKEEEAWSGEF---------------KWVAKECAGLPVSIVTV 327 (667)
Q Consensus 299 ~L~~~~s~~Lf~---------------~~i~~~c~GlPLai~~~ 327 (667)
+++.++..+++. ..+++.++|.|..+..+
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999998886 45666777777654433
No 161
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.68 E-value=0.0078 Score=62.77 Aligned_cols=248 Identities=13% Similarity=0.117 Sum_probs=145.7
Q ss_pred ccccchHHHHHHHHHhcC--------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 038110 159 EAFESRMSTLNDILGALK--------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIA 218 (667)
Q Consensus 159 ~~~~gr~~~~~~i~~~l~--------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 218 (667)
..++||+.+++.+..++. .||||||+.+.+....... -..+|+..+...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 458899999988876652 2469999999987753211 2467788778888899999999
Q ss_pred HHhCCCCCCC--ChhHHHH-HHHHHh-cCCeEEEEEeCCCCc--ccccccCCCcCCC-C---CCcEEEEecCChhhhhhc
Q 038110 219 DKLGLTFHEE--SESGRAS-LCNQLK-KNKTILMILDNIWEN--LDLLAIGIPHGND-H---KGCKILLTARSEDTLSRK 288 (667)
Q Consensus 219 ~~l~~~~~~~--~~~~~~~-l~~~L~-~~kr~LlVLDdvw~~--~~~~~l~~~~~~~-~---~gs~iivTTr~~~va~~~ 288 (667)
..++...... ....... +.+.+. .+++.+|||||++.. .....+...+... . .+..||+||+.......
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~- 174 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN- 174 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT-
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH-
Confidence 9987543221 1222222 555553 256799999999764 2233332222211 1 35678888877643211
Q ss_pred cC-------CcceEecCCCCHHHHHHHHH-----------------HHHHHHh---------CCcchHHHHHH-HHHc--
Q 038110 289 MD-------SKQNFSVGILKEEEAWSGEF-----------------KWVAKEC---------AGLPVSIVTVS-RALR-- 332 (667)
Q Consensus 289 ~~-------~~~~~~l~~L~~~~s~~Lf~-----------------~~i~~~c---------~GlPLai~~~g-~~L~-- 332 (667)
.. ....+.+.+++.++..+++. ..+++.+ .|.|-.+..+. .+..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 11 11369999999999998886 5678888 78774443332 2221
Q ss_pred ---cC---ChHHHHHHHHHhcCCCC----cCchHHHHHHHHHHhhh-h-----cccHHHHHHHHhH----cCCCCCcccH
Q 038110 333 ---NK---SLFEWKDALQQLRRPIS----TNFKDELKQIFLLIGYT-Y-----VAFIDDLIWYSIG----LGLFQGIKNM 392 (667)
Q Consensus 333 ---~k---~~~~W~~~l~~l~~~~~----~~l~~~lk~cfly~s~f-~-----~i~~~~Li~~Wia----eg~i~~~~~~ 392 (667)
+. +.+....+......... ..+|.+.+.++..++.+ . .+....+...+.. .|... -+.
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~ 332 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP--RVH 332 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC--CCH
T ss_pred HHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC--CCH
Confidence 21 45555555555443322 23467777666656554 2 4555555544432 23111 111
Q ss_pred HHHHHHHHHHHHHHHHcccccc
Q 038110 393 EEARAGVRTLVNKLKASCMLLD 414 (667)
Q Consensus 393 e~~~~~~~~li~~L~~~~l~~~ 414 (667)
..+.+++.+|...+++..
T Consensus 333 ----~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 333 ----SQLWSYLNDLREKGIVET 350 (389)
T ss_dssp ----HHHHHHHHHHHHTTSSEE
T ss_pred ----HHHHHHHHHHHhCCCeEE
Confidence 234455566666777654
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.27 E-value=0.00014 Score=75.37 Aligned_cols=101 Identities=22% Similarity=0.254 Sum_probs=51.3
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc-cCCcccc--CCCcccEEecCC---------cccccCC
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL-SLPSSIG--LLTNLHTLCLYG---------GVGVVDG 537 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lP~si~--~L~~L~~L~L~~---------~l~~LP~ 537 (667)
.+|+|+.|.+.++.. ..++. + .+++|+.|+|..+.+. .-...++ .+++|++|+|+. .+..+.
T Consensus 170 ~~P~L~~L~L~g~~~--l~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~- 243 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNN--LSIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR- 243 (362)
T ss_dssp TCTTCCEEEEECCBT--CBCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-
T ss_pred cCCCCcEEEEeCCCC--ceecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH-
Confidence 456777777766532 23333 2 2667777777666554 1122233 566777776632 011111
Q ss_pred CCccChhhh--cCCCCCCeEEeecCCCCC-CCCCC---cCCCCCCeeEEEe
Q 038110 538 VKNASLEEL--KHFPNLTSLELEVNDANT-LPRGG---LFFEKPERYKILT 582 (667)
Q Consensus 538 ~~~~~~~~l--~~L~~L~~L~l~~~~l~~-lP~~~---~~l~~L~~l~~~~ 582 (667)
..+ +.+++|++|++++|.+.. .+..+ ..+++|+.|+++.
T Consensus 244 ------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 244 ------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp ------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred ------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 111 246677777777665432 11111 2456677776653
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=0.00022 Score=70.25 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=16.2
Q ss_pred hCCCCCcEEEcCCCCCccCCccccCCC--cccEEecCC
Q 038110 495 RSMLQVRVLDLTDMNLLSLPSSIGLLT--NLHTLCLYG 530 (667)
Q Consensus 495 ~~l~~Lr~L~L~~~~i~~lP~si~~L~--~L~~L~L~~ 530 (667)
..+++|++|+|++|.|..+ ..+..|. +|++|+|++
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~ 229 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDG 229 (267)
T ss_dssp HHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTT
T ss_pred hhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccC
Confidence 4555555555555555444 2222222 444444444
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.14 E-value=0.00012 Score=68.29 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=16.9
Q ss_pred hCCCCCcEEEcCCCCCcc-----CCccccCCCcccEEecCC
Q 038110 495 RSMLQVRVLDLTDMNLLS-----LPSSIGLLTNLHTLCLYG 530 (667)
Q Consensus 495 ~~l~~Lr~L~L~~~~i~~-----lP~si~~L~~L~~L~L~~ 530 (667)
...++|++|+|++|.+.. +...+...++|++|+|++
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 444555555555554431 233333344555555554
No 165
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.09 E-value=0.00013 Score=67.95 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=58.5
Q ss_pred ccceeEEEEecc-Cccc-----cCC-CCCCCCccEEEccCCCCcc---ccccHHHHhCCCCCcEEEcCCCCCcc-----C
Q 038110 449 VRHCTSIVILDV-KTYV-----LPE-VMECPQLKLFSMPAEKNSF---FAIPHNLFRSMLQVRVLDLTDMNLLS-----L 513 (667)
Q Consensus 449 ~~~lr~L~l~~~-~~~~-----l~~-~~~~~~Lr~L~l~~~~~~~---~~lp~~~~~~l~~Lr~L~L~~~~i~~-----l 513 (667)
.+.++.|++.+| .+.. +.. ....++|++|++++|.... ..+...+ ...+.|++|+|++|.|.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcCCHHHHHHH
Confidence 456777777776 5532 111 1145677777777776520 1122322 556677777777776653 4
Q ss_pred CccccCCCcccEEec--CC-cc-----cccCCCCccChhhhcCCCCCCeEEeecCCC
Q 038110 514 PSSIGLLTNLHTLCL--YG-GV-----GVVDGVKNASLEELKHFPNLTSLELEVNDA 562 (667)
Q Consensus 514 P~si~~L~~L~~L~L--~~-~l-----~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l 562 (667)
...+....+|++|+| ++ .+ ..+. ..+...++|++|++++|.+
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~-------~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIA-------NMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHH-------HHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHH-------HHHHhCCCcCEEeccCCCC
Confidence 555566666677766 43 22 2233 4445556666666666543
No 166
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.0019 Score=65.64 Aligned_cols=160 Identities=11% Similarity=0.042 Sum_probs=94.2
Q ss_pred CcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHHh
Q 038110 157 DYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDKLFD-QAVFAEVSQSHDIRKIQGEIADKL 221 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l 221 (667)
....++|++..++.+..++.. ||||+|+.+.+...-. .+. ..+++..+....... .+++++.+
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~-i~~~~~~~ 96 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR-SYADGVLELNASDDRGIDV-VRNQIKHF 96 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GHHHHEEEECTTSCCSHHH-HHTHHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCCEEEecCccccChHH-HHHHHHHH
Confidence 345688999999998887643 4599999999875311 111 133444333323222 22222222
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChhhh-hhccCCcceEecC
Q 038110 222 GLTFHEESESGRASLCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSEDTL-SRKMDSKQNFSVG 298 (667)
Q Consensus 222 ~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~va-~~~~~~~~~~~l~ 298 (667)
..... .+..+++.+||+||++.. ..++.+...+.....++++|+||+...-. .........+++.
T Consensus 97 ~~~~~------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 97 AQKKL------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp HHBCC------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred Hhccc------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeec
Confidence 10000 000256899999999874 34444544443344567888888664321 1112234589999
Q ss_pred CCCHHHHHHHHH---------------HHHHHHhCCcchH-HHHHHHH
Q 038110 299 ILKEEEAWSGEF---------------KWVAKECAGLPVS-IVTVSRA 330 (667)
Q Consensus 299 ~L~~~~s~~Lf~---------------~~i~~~c~GlPLa-i~~~g~~ 330 (667)
+++.++..+++. ..+++.|+|.|.. +..+...
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999886 5788899999954 4444433
No 167
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.02 E-value=0.00035 Score=68.80 Aligned_cols=79 Identities=25% Similarity=0.261 Sum_probs=59.1
Q ss_pred HhCCCCCcEEEcCCCCCccC---CccccCCCcccEEecCC-cccccCCCCccChhhhcCCCCCCeEEeecCCCC-CCCCC
Q 038110 494 FRSMLQVRVLDLTDMNLLSL---PSSIGLLTNLHTLCLYG-GVGVVDGVKNASLEELKHFPNLTSLELEVNDAN-TLPRG 568 (667)
Q Consensus 494 ~~~l~~Lr~L~L~~~~i~~l---P~si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~-~lP~~ 568 (667)
..++++|+.|+|++|.+..+ |..++.+++|++|+|++ .+..+. .+..+..+ +|+.|++++|.+. .+|..
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~l-~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-----ELDKIKGL-KLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-----GGGGGTTS-CCSEEECTTSTTGGGCSSH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-----hhhhcccC-CcceEEccCCcCccccCcc
Confidence 36789999999999998865 46778999999999999 666553 01233444 9999999999875 35531
Q ss_pred -------CcCCCCCCee
Q 038110 569 -------GLFFEKPERY 578 (667)
Q Consensus 569 -------~~~l~~L~~l 578 (667)
+..+++|+.|
T Consensus 240 ~~y~~~il~~~P~L~~L 256 (267)
T 3rw6_A 240 STYISAIRERFPKLLRL 256 (267)
T ss_dssp HHHHHHHHHHCTTCCEE
T ss_pred hhHHHHHHHHCcccCeE
Confidence 3467788777
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.54 E-value=0.014 Score=59.22 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=52.7
Q ss_pred CcEEEEecCChhhhhh-cc-CCcceEecCCCCHHHHHHHHH---------------HHHHHHhCCcchHHHHHHHHHc--
Q 038110 272 GCKILLTARSEDTLSR-KM-DSKQNFSVGILKEEEAWSGEF---------------KWVAKECAGLPVSIVTVSRALR-- 332 (667)
Q Consensus 272 gs~iivTTr~~~va~~-~~-~~~~~~~l~~L~~~~s~~Lf~---------------~~i~~~c~GlPLai~~~g~~L~-- 332 (667)
+.++|.||........ .. .....+.+.+++.++...++. ..++..|.|.|-.+..+...+.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 3456666654432111 11 123579999999999888876 6788889999987766655442
Q ss_pred ----c--C-ChHHHHHHHHHhcCCCCcCchHHHHHHHH
Q 038110 333 ----N--K-SLFEWKDALQQLRRPISTNFKDELKQIFL 363 (667)
Q Consensus 333 ----~--k-~~~~W~~~l~~l~~~~~~~l~~~lk~cfl 363 (667)
+ . +.+....++..+.. ....++...+..+.
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~e~~~i~ 254 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAALGL-DELGLEKRDREILE 254 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHHTC-CTTCCCHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHhcc-cccCCCHHHHHHHH
Confidence 1 1 45556666555421 12234444444443
No 169
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.42 E-value=0.003 Score=57.64 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=49.5
Q ss_pred CCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCC-CCcc-CCccccCC----CcccEEecCC--cccccCCCCccCh
Q 038110 472 PQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDM-NLLS-LPSSIGLL----TNLHTLCLYG--GVGVVDGVKNASL 543 (667)
Q Consensus 472 ~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~-~i~~-lP~si~~L----~~L~~L~L~~--~l~~LP~~~~~~~ 543 (667)
.+|+.|+++++......+ ..+ .++++|+.|+|++| .++. --..|+.+ ++|++|+|++ .++.-- +
T Consensus 61 ~~L~~LDLs~~~Itd~GL-~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G------l 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-DHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG------I 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-GGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH------H
T ss_pred ceEeEEeCcCCCccHHHH-HHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH------H
Confidence 467777777776431222 233 77888888888887 3552 12334544 3678888876 333211 1
Q ss_pred hhhcCCCCCCeEEeecCC
Q 038110 544 EELKHFPNLTSLELEVND 561 (667)
Q Consensus 544 ~~l~~L~~L~~L~l~~~~ 561 (667)
..+.++++|++|++++|.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 345667888888888774
No 170
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.36 E-value=0.0081 Score=54.74 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=24.0
Q ss_pred hhcceeecccccccccc-ccchhhhhccCCCccEEEeecCCCCe
Q 038110 620 RGIEELSLAGLLDQDIK-NFVNELVKVGSSQLKYLQIEGYRGPQ 662 (667)
Q Consensus 620 ~~L~~L~L~~~~~~~~~-~~~~~l~~~~l~~L~~L~l~~~~~l~ 662 (667)
++|++|+|++| ..+. .-...| ..+++|++|+|++|+++.
T Consensus 114 ~~L~~L~Ls~C--~~ITD~Gl~~L--~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 114 KSMLEMEIISC--GNVTDKGIIAL--HHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHCCEEEEESC--TTCCHHHHHHG--GGCTTCCEEEEESCTTCC
T ss_pred CCCCEEEcCCC--CcCCHHHHHHH--hcCCCCCEEECCCCCCCC
Confidence 36777777777 3222 123345 567777777777777653
No 171
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.0059 Score=61.97 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=89.7
Q ss_pred cccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHHhC
Q 038110 158 YEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDKLFD-QAVFAEVSQSHDIRKIQGEIADKLG 222 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~ 222 (667)
...++|++..++.+..++.. ||||+|+.+++..... .+. ..+.+..+....... .++.+....
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 101 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINV-IREKVKEFA 101 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHT-THHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHH-HHHHHHHHH
Confidence 44578999999888877632 4699999999874311 111 123333332111111 111111100
Q ss_pred CCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChhhh-hhccCCcceEecCC
Q 038110 223 LTFHEESESGRASLCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSEDTL-SRKMDSKQNFSVGI 299 (667)
Q Consensus 223 ~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~va-~~~~~~~~~~~l~~ 299 (667)
... .+..+++.+||+||++.. ..++.+...+.....+.++|+||....-. .........+.+.+
T Consensus 102 ~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~ 168 (327)
T 1iqp_A 102 RTK-------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRP 168 (327)
T ss_dssp HSC-------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCC
T ss_pred hhC-------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecC
Confidence 000 011156789999999864 34444544443344567888888765321 11111234789999
Q ss_pred CCHHHHHHHHH---------------HHHHHHhCCcchHHHHHHHHH
Q 038110 300 LKEEEAWSGEF---------------KWVAKECAGLPVSIVTVSRAL 331 (667)
Q Consensus 300 L~~~~s~~Lf~---------------~~i~~~c~GlPLai~~~g~~L 331 (667)
++.++...++. ..+++.++|.|-.+..+...+
T Consensus 169 l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 169 LRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 99999988776 567788888887655444333
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.13 E-value=0.12 Score=51.76 Aligned_cols=135 Identities=12% Similarity=0.087 Sum_probs=76.4
Q ss_pred cccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCCCCC-EEEEEEeCCCCC---HHHHHHHHHH
Q 038110 158 YEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDKLFD-QAVFAEVSQSHD---IRKIQGEIAD 219 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~~F~-~~~wv~vs~~~~---~~~i~~~i~~ 219 (667)
...++|++..++.+..++.. ||||+|+.+.+...- ..+. ..+.++.+.... +.........
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT-TCHHHHCEEEETTSTTCTTTSSHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC-CcccCCeEEEeCccccChHHHHHHHHHHHh
Confidence 45578999999999888754 359999999887421 1111 122233332111 1111111110
Q ss_pred HhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChh-hhhhccCCcceEe
Q 038110 220 KLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSED-TLSRKMDSKQNFS 296 (667)
Q Consensus 220 ~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~-va~~~~~~~~~~~ 296 (667)
.. .+..+++-+||+|++... ...+.+...+.....+.++|+||.... +..........+.
T Consensus 95 ~~-----------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 95 TA-----------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp SC-----------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred cC-----------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 00 011256789999999764 334555555544445677888776644 2111122334899
Q ss_pred cCCCCHHHHHHHHH
Q 038110 297 VGILKEEEAWSGEF 310 (667)
Q Consensus 297 l~~L~~~~s~~Lf~ 310 (667)
+.+++.++...++.
T Consensus 158 ~~~~~~~~~~~~l~ 171 (319)
T 2chq_A 158 FKPVPKEAMKKRLL 171 (319)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHH
Confidence 99999999887765
No 173
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.72 E-value=0.17 Score=52.03 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=55.3
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChh-hhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSED-TLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~-va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++.+||+||+... ..++.+...+.....+..+|++|.... +..........+++.+++.++...++.
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 56789999999754 334444433433344566777765443 211122234689999999999888776
Q ss_pred ------HHHHHHhCCcchHHHHHH
Q 038110 311 ------KWVAKECAGLPVSIVTVS 328 (667)
Q Consensus 311 ------~~i~~~c~GlPLai~~~g 328 (667)
..+++.++|.|..+..+.
T Consensus 198 ~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 567778888887665543
No 174
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.51 Score=47.32 Aligned_cols=157 Identities=9% Similarity=0.052 Sum_probs=88.5
Q ss_pred ccchHHHHHHHHHhcCC------------------CCcHHHHHHHHHhccCC---CC-C-EEEEEEeCCCCCHHHHHHHH
Q 038110 161 FESRMSTLNDILGALKN------------------PDTTLAKEVAWKAENDK---LF-D-QAVFAEVSQSHDIRKIQGEI 217 (667)
Q Consensus 161 ~~gr~~~~~~i~~~l~~------------------~~TtLa~~vy~~~~~~~---~F-~-~~~wv~vs~~~~~~~i~~~i 217 (667)
+.||+++.++|...|.. |||++|+.|.+...... .. . ..+.|......+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 67999999999876632 35999999999875321 11 1 35566666777888999999
Q ss_pred HHHhCCCCCCCC-hhHHHH-HHHHH--hcCCeEEEEEeCCCCcccccccCCCcCC-CCCCcE--EEEecCChhhhhhcc-
Q 038110 218 ADKLGLTFHEES-ESGRAS-LCNQL--KKNKTILMILDNIWENLDLLAIGIPHGN-DHKGCK--ILLTARSEDTLSRKM- 289 (667)
Q Consensus 218 ~~~l~~~~~~~~-~~~~~~-l~~~L--~~~kr~LlVLDdvw~~~~~~~l~~~~~~-~~~gs~--iivTTr~~~va~~~~- 289 (667)
++++.+...... ...... +.+.+ ..++.++++||++..-.+-+.+...+.+ ...+++ ||.++...+......
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~ 181 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQIN 181 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcc
Confidence 999976432111 111122 33332 1267899999999775321111111100 012222 333343322211000
Q ss_pred -----CC-cceEecCCCCHHHHHHHHHHHHHHHh
Q 038110 290 -----DS-KQNFSVGILKEEEAWSGEFKWVAKEC 317 (667)
Q Consensus 290 -----~~-~~~~~l~~L~~~~s~~Lf~~~i~~~c 317 (667)
.. ...+.+.+++.++-.+++...+-...
T Consensus 182 ~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~ 215 (318)
T 3te6_A 182 IMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLL 215 (318)
T ss_dssp TCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_pred hhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 11 24689999999999999885555443
No 175
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.94 E-value=0.076 Score=45.76 Aligned_cols=15 Identities=47% Similarity=0.503 Sum_probs=6.4
Q ss_pred CcEEEcCCCCCccCC
Q 038110 500 VRVLDLTDMNLLSLP 514 (667)
Q Consensus 500 Lr~L~L~~~~i~~lP 514 (667)
|++|+|++|.|+.||
T Consensus 33 l~~L~Ls~N~l~~l~ 47 (130)
T 3rfe_A 33 TTELVLTGNNLTALP 47 (130)
T ss_dssp CSEEECTTSCCSSCC
T ss_pred CCEEECCCCcCCccC
Confidence 444444444444443
No 176
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.92 E-value=0.074 Score=45.85 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=44.7
Q ss_pred EEEEeccCcc--ccCCCCCCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCc
Q 038110 454 SIVILDVKTY--VLPEVMECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLL 511 (667)
Q Consensus 454 ~L~l~~~~~~--~l~~~~~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~ 511 (667)
.++.+++++. .+|.. -.++|+.|+|++|.+ ..+|..+|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNL--TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCC--SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcC--CccChhhhhhccccCEEEecCCCee
Confidence 5666667776 77753 235799999999988 7899999999999999999999764
No 177
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.74 E-value=0.095 Score=54.66 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=43.0
Q ss_pred HHHHhCCCCCcEEEcCCCCCccC-CccccCCCcccEEecCCcccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCCC-
Q 038110 491 HNLFRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYGGVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPRG- 568 (667)
Q Consensus 491 ~~~~~~l~~Lr~L~L~~~~i~~l-P~si~~L~~L~~L~L~~~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~~- 568 (667)
...|.++..|+.+.+..+. ..+ ...+.++.+|+.+.+...+..+|. ..|.++.+|+.+++.. .++.++..
T Consensus 258 ~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~i~~I~~------~aF~~c~~L~~i~lp~-~v~~I~~~a 329 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSRITELPE------SVFAGCISLKSIDIPE-GITQILDDA 329 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECT------TTTTTCTTCCEEECCT-TCCEECTTT
T ss_pred cceeeecccccEEeccccc-ceecCcccccccccccccCCCcccccCc------eeecCCCCcCEEEeCC-cccEehHhH
Confidence 3345566666666655432 223 223555566666666555555553 4455666666666643 24455443
Q ss_pred CcCCCCCCeeEE
Q 038110 569 GLFFEKPERYKI 580 (667)
Q Consensus 569 ~~~l~~L~~l~~ 580 (667)
+.++.+|+.+.+
T Consensus 330 F~~C~~L~~i~i 341 (394)
T 4gt6_A 330 FAGCEQLERIAI 341 (394)
T ss_dssp TTTCTTCCEEEE
T ss_pred hhCCCCCCEEEE
Confidence 334555555544
No 178
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.37 E-value=0.17 Score=52.35 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=44.0
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccEEecCC-cccccCCCCccChhhhc
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYG-GVGVVDGVKNASLEELK 547 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~-~l~~LP~~~~~~~~~l~ 547 (667)
.+..|+.+.+..+- ..++...|.++..|+.+.+..+ +..++. .+..+.+|+.+.+.. .+..++. ..|.
T Consensus 238 ~~~~L~~i~lp~~v---~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~------~aF~ 307 (379)
T 4h09_A 238 GMKALDEIAIPKNV---TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEP------RVFM 307 (379)
T ss_dssp TCSSCCEEEECTTC---CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECT------TTTT
T ss_pred CCccceEEEcCCCc---cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehh------hhhc
Confidence 34455555554321 3344444455555555555432 333433 244455555555544 3444442 3445
Q ss_pred CCCCCCeEEeecCCCCCCCCC-CcCCCCCCee
Q 038110 548 HFPNLTSLELEVNDANTLPRG-GLFFEKPERY 578 (667)
Q Consensus 548 ~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l 578 (667)
++.+|+.+.+.. .++.|+.. +.++.+|+.+
T Consensus 308 ~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 308 DCVKLSSVTLPT-ALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCCC
T ss_pred CCCCCCEEEcCc-cccEEHHHHhhCCCCCCEE
Confidence 555555555532 24444433 2344444444
No 179
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.27 E-value=0.23 Score=51.68 Aligned_cols=101 Identities=12% Similarity=0.208 Sum_probs=76.2
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccEEecCCcccccCCCCccChhhhcC
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYGGVGVVDGVKNASLEELKH 548 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~~l~~LP~~~~~~~~~l~~ 548 (667)
.+.+|+.+.+..+. ..+....|.++..|+.+.+. +.++.+|. .|.++.+|+.+.|...+..++. ..|.+
T Consensus 263 ~c~~L~~i~lp~~~---~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~------~aF~~ 332 (394)
T 4gt6_A 263 SCAYLASVKMPDSV---VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILD------DAFAG 332 (394)
T ss_dssp TCSSCCEEECCTTC---CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECT------TTTTT
T ss_pred ecccccEEeccccc---ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehH------hHhhC
Confidence 67788888886543 45667778889999999886 45777765 4778889999999877777764 56888
Q ss_pred CCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEE
Q 038110 549 FPNLTSLELEVNDANTLPRG-GLFFEKPERYKIL 581 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~ 581 (667)
+.+|+.+.+.. .++.++.. +.++.+|+.+.+.
T Consensus 333 C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 333 CEQLERIAIPS-SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEES
T ss_pred CCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEEC
Confidence 89999999864 47777765 5577888888664
No 180
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.78 E-value=0.37 Score=50.05 Aligned_cols=85 Identities=11% Similarity=0.101 Sum_probs=49.7
Q ss_pred ccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccEEecCCcccccCCCCccChhhhcCCCCCCeEEeecCCCCCCCC
Q 038110 489 IPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYGGVGVVDGVKNASLEELKHFPNLTSLELEVNDANTLPR 567 (667)
Q Consensus 489 lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~~l~~LP~~~~~~~~~l~~L~~L~~L~l~~~~l~~lP~ 567 (667)
++...|..+..|+.+.+..+ ++.+++ .+.++.+|+.++|...+..++. ..|.++++|+.+.+..+ +..++.
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~------~aF~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGK------RSFRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECT------TTTTTCTTCCEECCCTT-CCEECT
T ss_pred eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhH------HhccCCCCCCEEEECcc-ccEehH
Confidence 44444566666666666543 555533 3556666777766655555543 45666667777766544 555655
Q ss_pred C-CcCCCCCCeeEEE
Q 038110 568 G-GLFFEKPERYKIL 581 (667)
Q Consensus 568 ~-~~~l~~L~~l~~~ 581 (667)
. +.++.+|+.+.+.
T Consensus 360 ~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 360 NAFQGCINLKKVELP 374 (394)
T ss_dssp TTBTTCTTCCEEEEE
T ss_pred HHhhCCCCCCEEEEC
Confidence 4 3456666666553
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.49 E-value=0.47 Score=46.42 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=56.7
Q ss_pred CCeEEEEEeCCCCc------------ccccccCCCcC---CCCCCcEEEEecCChhhhhh--ccCC-cceEecCCCCH-H
Q 038110 243 NKTILMILDNIWEN------------LDLLAIGIPHG---NDHKGCKILLTARSEDTLSR--KMDS-KQNFSVGILKE-E 303 (667)
Q Consensus 243 ~kr~LlVLDdvw~~------------~~~~~l~~~~~---~~~~gs~iivTTr~~~va~~--~~~~-~~~~~l~~L~~-~ 303 (667)
.+..+|+|||+... ...+.+...+. .......||.||........ ..+. ...+.+++++. +
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~ 202 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGE 202 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHH
Confidence 56899999998542 11122211121 12233456777877644321 1111 35788999988 6
Q ss_pred HHHHHHH----------HHHHHHhCCc------chHHHHHHHHHccCChHHHHHHHHHhcCC
Q 038110 304 EAWSGEF----------KWVAKECAGL------PVSIVTVSRALRNKSLFEWKDALQQLRRP 349 (667)
Q Consensus 304 ~s~~Lf~----------~~i~~~c~Gl------PLai~~~g~~L~~k~~~~W~~~l~~l~~~ 349 (667)
+...++. ..+++.+.|. +-++..+-.+-.......|..++..+...
T Consensus 203 ~i~~i~~~~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 203 QLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHc
Confidence 6666655 6677777773 33333332222222556666666665433
No 182
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.03 E-value=1 Score=44.19 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=71.9
Q ss_pred CcccccchHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCC
Q 038110 157 DYEAFESRMSTLNDILGALK---------------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHD 209 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~---------------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~ 209 (667)
.+..++|.+..++.+...+. .|||+||+.+.+.... . .+.+..+.-
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~--~---~~~v~~~~~-- 87 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA--T---FIRVVGSEL-- 87 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC--E---EEEEEGGGG--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--C---EEEEehHHH--
Confidence 35567899988888876651 2469999999987542 1 222322111
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCc----------------ccccccCCCcC--CCC
Q 038110 210 IRKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWEN----------------LDLLAIGIPHG--NDH 270 (667)
Q Consensus 210 ~~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~----------------~~~~~l~~~~~--~~~ 270 (667)
.....+. ...... +.......+..+|+|||+... ..+..+...+. ...
T Consensus 88 ------------~~~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 88 ------------VKKFIGE-GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ------------CCCSTTH-HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ------------HHhccch-HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111000 011111 333333356689999999653 01111111111 122
Q ss_pred CCcEEEEecCChhhhhh-cc---CCcceEecCCCCHHHHHHHHH
Q 038110 271 KGCKILLTARSEDTLSR-KM---DSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 271 ~gs~iivTTr~~~va~~-~~---~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
.+..||.||........ .. .....+.+...+.++-.+++.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~ 198 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILK 198 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHH
Confidence 35677778876533210 11 223478999999999988876
No 183
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.75 E-value=0.29 Score=50.51 Aligned_cols=102 Identities=19% Similarity=0.125 Sum_probs=77.4
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCCc-cccCCCcccEEecCCcccccCCCCccChhhhcC
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYGGVGVVDGVKNASLEELKH 548 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP~-si~~L~~L~~L~L~~~l~~LP~~~~~~~~~l~~ 548 (667)
.+.+|..+.+..+- ..++...|.++..|+.+.+..+ ++.++. .+.++.+|+.+.+...+..++. ..|.+
T Consensus 215 ~~~~l~~i~~~~~~---~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~------~aF~~ 284 (379)
T 4h09_A 215 YGKNLKKITITSGV---TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPY------LLCSG 284 (379)
T ss_dssp TCSSCSEEECCTTC---CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECT------TTTTT
T ss_pred cccccceeeeccce---eEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccc------ccccc
Confidence 56677777775442 4566666788999999998765 666644 5677888999998877777774 56788
Q ss_pred CCCCCeEEeecCCCCCCCCC-CcCCCCCCeeEEE
Q 038110 549 FPNLTSLELEVNDANTLPRG-GLFFEKPERYKIL 581 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~l~~~ 581 (667)
+++|+.+.+..+.++.++.. +.++.+|+.+.+.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 99999999988888888876 4577888888653
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.46 E-value=2.8 Score=41.98 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=68.1
Q ss_pred CcccccchHHHHHHHHHhc--------------------------CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCH
Q 038110 157 DYEAFESRMSTLNDILGAL--------------------------KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDI 210 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l--------------------------~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~ 210 (667)
....++|.+..++.+.+.+ +.|||+||+.+.+...- . ..+.+..+.-.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~---~~~~i~~~~l~-- 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S---TFFSISSSDLV-- 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-C---EEEEEECCSSC--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-C---cEEEEEhHHHH--
Confidence 3456778777777776543 12469999999987621 1 12233333211
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCccc-------------ccccCCCcC---CCCCCcE
Q 038110 211 RKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENLD-------------LLAIGIPHG---NDHKGCK 274 (667)
Q Consensus 211 ~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~~-------------~~~l~~~~~---~~~~gs~ 274 (667)
....+........+.+.....+..+|+||++..... ...+...+. ....+-.
T Consensus 84 ------------~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 84 ------------SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ------------CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ------------hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 111111221111244444336678999999975410 011111111 1123445
Q ss_pred EEEecCChhhhhh--ccCCcceEecCCCCHHHHHHHHH
Q 038110 275 ILLTARSEDTLSR--KMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 275 iivTTr~~~va~~--~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
||.||........ .......+.+...+.++-.+++.
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~ 189 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFK 189 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHH
Confidence 5556655432210 11233577888888887777764
No 185
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.09 E-value=0.38 Score=43.70 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=27.3
Q ss_pred cccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhc
Q 038110 158 YEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAE 191 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~ 191 (667)
...++||+++++.+.+++.. ||||+|+.+.+...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44578999999999988743 46999999998753
No 186
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.61 E-value=0.25 Score=51.43 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=73.2
Q ss_pred CCCCccEEEccCCCCccccccHHHHhCCCCCcEEEcCCCCCccCC-ccccCCCcccEEecCCcccccCCCCccChhhhcC
Q 038110 470 ECPQLKLFSMPAEKNSFFAIPHNLFRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYGGVGVVDGVKNASLEELKH 548 (667)
Q Consensus 470 ~~~~Lr~L~l~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lP-~si~~L~~L~~L~L~~~l~~LP~~~~~~~~~l~~ 548 (667)
.+.+|..+.+..+ +..+++..|.++.+|+.++|..+ ++.++ .+|.++.+|+.+.+...+..++. ..|.+
T Consensus 295 ~~~~L~~i~l~~~---i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~~------~aF~~ 364 (394)
T 4fs7_A 295 GCSSLTEVKLLDS---VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIGA------NAFQG 364 (394)
T ss_dssp TCTTCCEEEECTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEECT------TTBTT
T ss_pred ccccccccccccc---cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEehH------HHhhC
Confidence 6788888888654 26788888899999999999754 77785 46889999999999877777764 67899
Q ss_pred CCCCCeEEeecCCCCCCCCCCcCCCCCCe
Q 038110 549 FPNLTSLELEVNDANTLPRGGLFFEKPER 577 (667)
Q Consensus 549 L~~L~~L~l~~~~l~~lP~~~~~l~~L~~ 577 (667)
+++|+.+++..+ ++.+...+.+..+|+.
T Consensus 365 C~~L~~i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 365 CINLKKVELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp CTTCCEEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred CCCCCEEEECCC-CEEhhheecCCCCCcE
Confidence 999999999754 3334333444444443
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.31 E-value=3 Score=42.46 Aligned_cols=134 Identities=7% Similarity=0.008 Sum_probs=68.4
Q ss_pred CcccccchHHHHHHHHHhcC--------------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCH
Q 038110 157 DYEAFESRMSTLNDILGALK--------------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDI 210 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~--------------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~ 210 (667)
....++|.+..++.+.+++. .|||+||+.+.+.... ..+.++.+.-+.
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc-
Confidence 34567899988888877652 2569999999986541 133444332111
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCc-------------ccccccCCCcC----CCCCC
Q 038110 211 RKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWEN-------------LDLLAIGIPHG----NDHKG 272 (667)
Q Consensus 211 ~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~-------------~~~~~l~~~~~----~~~~g 272 (667)
...+. ...... +.......+..+|+||++... .....+...+. ....+
T Consensus 156 -------------~~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 -------------KWVGE-GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -------------SSTTH-HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -------------cccch-HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00000 011111 333333356789999999432 01112211111 11233
Q ss_pred cEEEEecCChhhhh-h-ccCCcceEecCCCCHHHHHHHHH
Q 038110 273 CKILLTARSEDTLS-R-KMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 273 s~iivTTr~~~va~-~-~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
..||.||....... . .......+.+...+.++-.+++.
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~ 261 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVI 261 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHH
Confidence 45565665533211 0 11223467888888888777764
No 188
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.85 E-value=5.8 Score=41.75 Aligned_cols=137 Identities=17% Similarity=0.103 Sum_probs=69.5
Q ss_pred CCcccccchHHHHHHHHHhc--------------------------CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCC
Q 038110 156 KDYEAFESRMSTLNDILGAL--------------------------KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHD 209 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l--------------------------~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~ 209 (667)
..+..++|.+..++.+.+++ +.|||+||+.+.+... ..-++.++-.
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~------~~~~~~v~~~-- 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSISSS-- 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC------SSEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC------CCCEEEEeHH--
Confidence 34566788888888877654 1245999999998762 1123334332
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcc-------------cccccCCCcCC---CCCCc
Q 038110 210 IRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENL-------------DLLAIGIPHGN---DHKGC 273 (667)
Q Consensus 210 ~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~-------------~~~~l~~~~~~---~~~gs 273 (667)
.+. ....+ ........+.+.....+..+|+||++.... ....+...+.. ...+.
T Consensus 203 --~l~----~~~~g----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 203 --DLV----SKWLG----ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp -------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred --HHH----hhhcc----hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 111 11001 011111113333333567899999997540 01112222211 23455
Q ss_pred EEEEecCChhhhhh--ccCCcceEecCCCCHHHHHHHHH
Q 038110 274 KILLTARSEDTLSR--KMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 274 ~iivTTr~~~va~~--~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
.||.||........ .......+.+...+.++-..+|.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~ 311 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFR 311 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHH
Confidence 67767765433210 11233467788888877777664
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.40 E-value=3 Score=41.71 Aligned_cols=135 Identities=15% Similarity=0.117 Sum_probs=71.5
Q ss_pred CCcccccchHHHHHHHHHhc--------------------------CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCC
Q 038110 156 KDYEAFESRMSTLNDILGAL--------------------------KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHD 209 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l--------------------------~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~ 209 (667)
..+..++|.+..++.+..++ +.|||+||+.+.+... ..| +.|+.
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~---~~v~~----- 84 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STF---FSVSS----- 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CEE---EEEEH-----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CCE---EEEch-----
Confidence 44567889999888888766 1256999999998764 222 22221
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCccc-------------ccccCCC---cCCCCCC
Q 038110 210 IRKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWENLD-------------LLAIGIP---HGNDHKG 272 (667)
Q Consensus 210 ~~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~~-------------~~~l~~~---~~~~~~g 272 (667)
..+. ....+. ...... +.+.....+..+|+||++..... ...+... +.....+
T Consensus 85 -~~l~--------~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 85 -SDLV--------SKWMGE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HHHH--------TTTGGG-HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HHHh--------hcccch-HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 1111 111111 111111 33333335668999999974311 1111111 1122345
Q ss_pred cEEEEecCChhhhhh--ccCCcceEecCCCCHHHHHHHHH
Q 038110 273 CKILLTARSEDTLSR--KMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 273 s~iivTTr~~~va~~--~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
..||.||........ .......+.+...+.++-.+++.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~ 194 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFE 194 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHH
Confidence 566667766433210 01223467888888888877765
No 190
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.10 E-value=2.3 Score=42.95 Aligned_cols=84 Identities=11% Similarity=-0.058 Sum_probs=54.1
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChh-hhhhccCCcceEecCCCCHHHHHHHHH---------
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSED-TLSRKMDSKQNFSVGILKEEEAWSGEF--------- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~-va~~~~~~~~~~~l~~L~~~~s~~Lf~--------- 310 (667)
+++-++|+|++... ...+.+...+.....+..+|++|.+.+ +..........+++.+++.++..+.+.
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~~ 186 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDA 186 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCCCHHH
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCCCHHH
Confidence 56788999999764 233444333433344667776666543 332223344689999999999888776
Q ss_pred -HHHHHHhCCcchHHHH
Q 038110 311 -KWVAKECAGLPVSIVT 326 (667)
Q Consensus 311 -~~i~~~c~GlPLai~~ 326 (667)
..++..++|.|..+..
T Consensus 187 ~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 187 LLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 5677788888865533
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.85 E-value=4.9 Score=38.49 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=36.3
Q ss_pred CCeEEEEEeCCCCcc-------------c----ccccCCCcCC--CCCCcEEEEecCChhhhhh-cc---CCcceEecCC
Q 038110 243 NKTILMILDNIWENL-------------D----LLAIGIPHGN--DHKGCKILLTARSEDTLSR-KM---DSKQNFSVGI 299 (667)
Q Consensus 243 ~kr~LlVLDdvw~~~-------------~----~~~l~~~~~~--~~~gs~iivTTr~~~va~~-~~---~~~~~~~l~~ 299 (667)
....+|+|||+.... . ...+...+.. ...+..||.||........ .. .....+.+..
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 557999999997530 0 1112111111 1234566667765442211 11 2235788999
Q ss_pred CCHHHHHHHHH
Q 038110 300 LKEEEAWSGEF 310 (667)
Q Consensus 300 L~~~~s~~Lf~ 310 (667)
.+.++-.+++.
T Consensus 177 p~~~~r~~il~ 187 (262)
T 2qz4_A 177 PTLQERREIFE 187 (262)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 99998888876
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.76 E-value=3.3 Score=42.12 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=67.7
Q ss_pred cccccchHHHHHHHHHhc--------------------------CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHH
Q 038110 158 YEAFESRMSTLNDILGAL--------------------------KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIR 211 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l--------------------------~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~ 211 (667)
+..++|.+..++.|...+ +.|||+||+.+.+... ..| +.|.. .
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~---~~v~~------~ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STF---FSVSS------S 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CEE---EEEEH------H
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEeeH------H
Confidence 455778777777777654 1256999999999764 112 22221 1
Q ss_pred HHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCccc-------------ccccCCCc---CCCCCCcEE
Q 038110 212 KIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENLD-------------LLAIGIPH---GNDHKGCKI 275 (667)
Q Consensus 212 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~~-------------~~~l~~~~---~~~~~gs~i 275 (667)
++. . ...+........+.......+..+|+||++..... ...+...+ .....+..|
T Consensus 119 ~l~----~----~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 119 DLV----S----KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HHH----S----CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred HHh----h----hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 221 1 11111111111233333335779999999975310 11111111 111234556
Q ss_pred EEecCChhhhh--hccCCcceEecCCCCHHHHHHHHH
Q 038110 276 LLTARSEDTLS--RKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 276 ivTTr~~~va~--~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
|.||....... ........+.+...+.++-.+++.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~ 227 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFE 227 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHH
Confidence 66776543211 011334577888888888777764
No 193
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.32 E-value=2.3 Score=42.59 Aligned_cols=134 Identities=11% Similarity=0.090 Sum_probs=73.7
Q ss_pred CCcccccchHHHHHHHHHhcCC---------------CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038110 156 KDYEAFESRMSTLNDILGALKN---------------PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADK 220 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~~---------------~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 220 (667)
.....++|.+..++.+..++.. ||||+|+.+.+.... ..+.++.+. .... ..++++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~-~~~~-~i~~~~~~ 95 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSD-CKID-FVRGPLTN 95 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTT-CCHH-HHHTHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccc-cCHH-HHHHHHHH
Confidence 3455678999888888887643 359999999886631 234444333 2222 22222221
Q ss_pred hCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcc---cccccCCCcCCCCCCcEEEEecCChhhh-hhccCCcceEe
Q 038110 221 LGLTFHEESESGRASLCNQLKKNKTILMILDNIWENL---DLLAIGIPHGNDHKGCKILLTARSEDTL-SRKMDSKQNFS 296 (667)
Q Consensus 221 l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~---~~~~l~~~~~~~~~gs~iivTTr~~~va-~~~~~~~~~~~ 296 (667)
...... . .+++-+|++||+.... ..+.+...+.....+.++|+||....-. .........+.
T Consensus 96 ~~~~~~-------------~-~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~ 161 (324)
T 3u61_B 96 FASAAS-------------F-DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVIT 161 (324)
T ss_dssp HHHBCC-------------C-SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEE
T ss_pred HHhhcc-------------c-CCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEE
Confidence 110000 0 1467899999998653 2333332222222456788887764421 10011124799
Q ss_pred cCCCCHHHHHHHHH
Q 038110 297 VGILKEEEAWSGEF 310 (667)
Q Consensus 297 l~~L~~~~s~~Lf~ 310 (667)
+.+++.++-.+++.
T Consensus 162 ~~~~~~~e~~~il~ 175 (324)
T 3u61_B 162 FGQPTDEDKIEMMK 175 (324)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHH
Confidence 99999888655443
No 194
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.86 E-value=1 Score=48.61 Aligned_cols=164 Identities=10% Similarity=-0.003 Sum_probs=87.4
Q ss_pred CCcccccchHHHHHHHHHhcCC-------------------------------CCcHHHHHHHHHhccCCCCCEEEEEEe
Q 038110 156 KDYEAFESRMSTLNDILGALKN-------------------------------PDTTLAKEVAWKAENDKLFDQAVFAEV 204 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~~-------------------------------~~TtLa~~vy~~~~~~~~F~~~~wv~v 204 (667)
.....++|++..++.+..|+.. ||||+|+.+.+... + ..+.++.
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeC
Confidence 4456788999999998887642 35999999998763 2 2344444
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHH-HhcCCeEEEEEeCCCCccc-----ccccCCCcCCCCCCcEEEEe
Q 038110 205 SQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQ-LKKNKTILMILDNIWENLD-----LLAIGIPHGNDHKGCKILLT 278 (667)
Q Consensus 205 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~-L~~~kr~LlVLDdvw~~~~-----~~~l~~~~~~~~~gs~iivT 278 (667)
+...... +....+........-..-... ..+. ...+++.+|++|++..... +..+...+.. .+..||++
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli 185 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNMSVVGYFKH--NEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILI 185 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEE
T ss_pred CCcchHH-HHHHHHHHHhccccHHHHHhh--hhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEE
Confidence 4433332 333332222111000000000 0000 0125679999999976421 1222221211 23345555
Q ss_pred cCChhhh--hhccCCcceEecCCCCHHHHHHHHH---------------HHHHHHhCC-cchHHHHHHH
Q 038110 279 ARSEDTL--SRKMDSKQNFSVGILKEEEAWSGEF---------------KWVAKECAG-LPVSIVTVSR 329 (667)
Q Consensus 279 Tr~~~va--~~~~~~~~~~~l~~L~~~~s~~Lf~---------------~~i~~~c~G-lPLai~~~g~ 329 (667)
|...... .........+.+.+++.++..+.+. ..|++.++| ++-++..+..
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5443211 1122234578999999999887775 678888888 4555555443
No 195
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.72 E-value=0.55 Score=49.64 Aligned_cols=116 Identities=11% Similarity=0.092 Sum_probs=64.8
Q ss_pred CCcHHHHHHHHHhccCCCCC--EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCC
Q 038110 178 PDTTLAKEVAWKAENDKLFD--QAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWE 255 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~ 255 (667)
||||||+.+++.... .|. ..++++ ...+..++...+.... ...+.+.+. .+.-+|+|||++.
T Consensus 142 GKTtLa~aia~~l~~--~~~~~~v~~v~------~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~vL~IDEi~~ 205 (440)
T 2z4s_A 142 GKTHLLQSIGNYVVQ--NEPDLRVMYIT------SEKFLNDLVDSMKEGK-------LNEFREKYR-KKVDILLIDDVQF 205 (440)
T ss_dssp SHHHHHHHHHHHHHH--HCCSSCEEEEE------HHHHHHHHHHHHHTTC-------HHHHHHHHT-TTCSEEEEECGGG
T ss_pred CHHHHHHHHHHHHHH--hCCCCeEEEee------HHHHHHHHHHHHHccc-------HHHHHHHhc-CCCCEEEEeCccc
Confidence 569999999997642 221 234444 3334555555443211 111344443 2567999999975
Q ss_pred ccc----ccccCCCcCC-CCCCcEEEEecCChh---------hhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 256 NLD----LLAIGIPHGN-DHKGCKILLTARSED---------TLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 256 ~~~----~~~l~~~~~~-~~~gs~iivTTr~~~---------va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
... -+.+...+.. ...|..||+||.... +.. .+.....+.+++++.++-..++.
T Consensus 206 l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s-R~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 206 LIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS-RFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp GSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH-HHHSSBCCBCCCCCHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh-hccCCeEEEeCCCCHHHHHHHHH
Confidence 421 1222222211 134678888887632 111 12223578899999999888876
No 196
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=85.91 E-value=10 Score=38.86 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=27.5
Q ss_pred CCcccccchHHHHHHHHHhc--------------------------CCCCcHHHHHHHHHhc
Q 038110 156 KDYEAFESRMSTLNDILGAL--------------------------KNPDTTLAKEVAWKAE 191 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l--------------------------~~~~TtLa~~vy~~~~ 191 (667)
..+..++|.+..++.+..++ +.|||+||+.+.+...
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 34567889999999988776 1256999999988654
No 197
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.26 E-value=14 Score=38.00 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=74.9
Q ss_pred cCCCcccccchHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCC
Q 038110 154 SNKDYEAFESRMSTLNDILGALK---------------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQ 206 (667)
Q Consensus 154 ~~~~~~~~~gr~~~~~~i~~~l~---------------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~ 206 (667)
|...+..+.|.++.+++|.+.+. .|||.||++|.+..... | +.|..+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f---~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--F---IRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--E---EEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--c---eEEEhHH
Confidence 44556778888888888776541 24699999999987632 3 3343332
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcc----------c------ccccCCCcC--C
Q 038110 207 SHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENL----------D------LLAIGIPHG--N 268 (667)
Q Consensus 207 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~----------~------~~~l~~~~~--~ 268 (667)
- .....+.+......+.+.-+....+.|.+|++.... + ...+...+. .
T Consensus 218 l--------------~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 218 L--------------VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp G--------------SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred h--------------hccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 1 111111111111113333333667999999997530 0 111111111 1
Q ss_pred CCCCcEEEEecCChhhhhhc----cCCcceEecCCCCHHHHHHHHH
Q 038110 269 DHKGCKILLTARSEDTLSRK----MDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 269 ~~~gs~iivTTr~~~va~~~----~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
...+-.||.||...+....+ ..-...+.++..+.++-.++|+
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 329 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILR 329 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHH
Confidence 22344567788766543211 1334688899888888888876
No 198
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.54 E-value=1.6 Score=44.15 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=82.9
Q ss_pred CcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHHh
Q 038110 157 DYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDKLFD-QAVFAEVSQSHDIRKIQGEIADKL 221 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l 221 (667)
....++|+++.++.+..++.. ||||+|+.+.+.......+. ..+.+..+.......+ .+.+...
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 113 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNF 113 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHH
Confidence 345678888888888887754 35999999988743110011 1223333332222222 2222111
Q ss_pred CC-CCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChh-hhhhccCCcceEec
Q 038110 222 GL-TFHEESESGRASLCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSED-TLSRKMDSKQNFSV 297 (667)
Q Consensus 222 ~~-~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~-va~~~~~~~~~~~l 297 (667)
.. ........ .......+++-+|++|++... ...+.+...+.......++|++|.... +..........+.+
T Consensus 114 ~~~~~~~~~~~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~ 189 (353)
T 1sxj_D 114 ARLTVSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRF 189 (353)
T ss_dssp HHSCCCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEEC
T ss_pred hhhcccccchh----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEe
Confidence 10 00000000 000001134569999998654 223333333333334567777765443 21111111247889
Q ss_pred CCCCHHHHHHHHH---------------HHHHHHhCCcchHHH
Q 038110 298 GILKEEEAWSGEF---------------KWVAKECAGLPVSIV 325 (667)
Q Consensus 298 ~~L~~~~s~~Lf~---------------~~i~~~c~GlPLai~ 325 (667)
.+++.++....+. ..|++.++|.|-.+.
T Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~ 232 (353)
T 1sxj_D 190 KALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGI 232 (353)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 9999998877765 556666777665443
No 199
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.34 E-value=8 Score=38.68 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=25.9
Q ss_pred CcccccchHHHHHHHHHhcC-------------------CCCcHHHHHHHHHhc
Q 038110 157 DYEAFESRMSTLNDILGALK-------------------NPDTTLAKEVAWKAE 191 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~-------------------~~~TtLa~~vy~~~~ 191 (667)
....++|++..++.+..++. .|||++|+.+.+...
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 35568899988887776653 246999999987654
No 200
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=81.33 E-value=15 Score=38.61 Aligned_cols=71 Identities=10% Similarity=-0.032 Sum_probs=39.5
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChh--hhhhccCCcceEecCCCCHHHHHHHHHHHHH
Q 038110 243 NKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSED--TLSRKMDSKQNFSVGILKEEEAWSGEFKWVA 314 (667)
Q Consensus 243 ~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~--va~~~~~~~~~~~l~~L~~~~s~~Lf~~~i~ 314 (667)
+++.+|+||++... ...+.+...+.. +.-.-|..||.+.. +..........+.+.+++.++...++.+.+.
T Consensus 105 ~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp TCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHH
Confidence 67899999999765 334444333322 11222233555543 1111223345889999999999888864333
No 201
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=80.69 E-value=0.26 Score=46.91 Aligned_cols=107 Identities=12% Similarity=0.089 Sum_probs=56.6
Q ss_pred CCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 038110 178 PDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENL 257 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~ 257 (667)
||||||+.+.+..... .....|+..+.-.+. +. ...+.+ .+.-+||+||++...
T Consensus 64 GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~----------------~~~~~~--~~~~vliiDe~~~~~ 117 (242)
T 3bos_A 64 GRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST----------------ALLEGL--EQFDLICIDDVDAVA 117 (242)
T ss_dssp SHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG----------------GGGTTG--GGSSEEEEETGGGGT
T ss_pred CHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH----------------HHHHhc--cCCCEEEEecccccc
Confidence 5799999999876633 334567765432110 00 000111 235789999997642
Q ss_pred --c--ccccCCCcCC-CCCC-cEEEEecCChhhh-----h---hccCCcceEecCCCCHHHHHHHHH
Q 038110 258 --D--LLAIGIPHGN-DHKG-CKILLTARSEDTL-----S---RKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 258 --~--~~~l~~~~~~-~~~g-s~iivTTr~~~va-----~---~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
. .+.+...+.. ...+ .++|+||+...-. . ........+.+.+++.++..+++.
T Consensus 118 ~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~ 184 (242)
T 3bos_A 118 GHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQ 184 (242)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHH
Confidence 1 1222221110 0112 2477777643210 0 001112579999999999988876
No 202
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=80.26 E-value=1.4 Score=43.72 Aligned_cols=70 Identities=7% Similarity=0.035 Sum_probs=41.1
Q ss_pred eEEEEEeCCCCc-----------ccccccCCCcCCCCCCcEEEEecCChhhhh-------hccCCcceEecCCCCHHHHH
Q 038110 245 TILMILDNIWEN-----------LDLLAIGIPHGNDHKGCKILLTARSEDTLS-------RKMDSKQNFSVGILKEEEAW 306 (667)
Q Consensus 245 r~LlVLDdvw~~-----------~~~~~l~~~~~~~~~gs~iivTTr~~~va~-------~~~~~~~~~~l~~L~~~~s~ 306 (667)
.-+|+||++... .....+...+.....+..||.||....... ........+.+.+++.++-.
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 210 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELF 210 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHH
Confidence 359999999732 223334333333445567888876432210 00012368999999999988
Q ss_pred HHHHHHHH
Q 038110 307 SGEFKWVA 314 (667)
Q Consensus 307 ~Lf~~~i~ 314 (667)
.++...+.
T Consensus 211 ~il~~~l~ 218 (309)
T 3syl_A 211 EIAGHMLD 218 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88864333
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=79.99 E-value=35 Score=33.10 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=25.7
Q ss_pred CcccccchHHHHHHHHHhcC--------------------------CCCcHHHHHHHHHhc
Q 038110 157 DYEAFESRMSTLNDILGALK--------------------------NPDTTLAKEVAWKAE 191 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~--------------------------~~~TtLa~~vy~~~~ 191 (667)
....++|.+..++.+.+++. .||||+|+.+.+...
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 34567888888888876651 246999999998664
No 204
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.37 E-value=28 Score=36.45 Aligned_cols=138 Identities=13% Similarity=0.117 Sum_probs=73.3
Q ss_pred cCCCcccccchHHHHHHHHHhc---------------------------CCCCcHHHHHHHHHhccCCCCCEEEEEEeCC
Q 038110 154 SNKDYEAFESRMSTLNDILGAL---------------------------KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQ 206 (667)
Q Consensus 154 ~~~~~~~~~gr~~~~~~i~~~l---------------------------~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~ 206 (667)
|...+..+.|.++.+++|.+.+ +.|||+||++|.+..... | +.|..+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~--f---i~vs~s~ 278 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT--F---IRVIGSE 278 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE--E---EEEEGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC--e---EEEEhHH
Confidence 3444567888888888887653 124699999999987632 2 3333322
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcc--------c--------ccccCCCcC--C
Q 038110 207 SHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENL--------D--------LLAIGIPHG--N 268 (667)
Q Consensus 207 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~--------~--------~~~l~~~~~--~ 268 (667)
+.....+.+......+...-+....++|++|++.... . ...+...+. .
T Consensus 279 --------------L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 279 --------------LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp --------------GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred --------------hhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 1111111111111113333333667999999997431 0 001111111 1
Q ss_pred CCCCcEEEEecCChhhhhhc----cCCcceEecCCCCHHHHHHHHH
Q 038110 269 DHKGCKILLTARSEDTLSRK----MDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 269 ~~~gs~iivTTr~~~va~~~----~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
...+-.||.||........+ ..-...+.+...+.++-.++|+
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk 390 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFR 390 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHH
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHH
Confidence 22334566677665543211 1234678888888888788876
No 205
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.22 E-value=17 Score=36.34 Aligned_cols=67 Identities=7% Similarity=-0.054 Sum_probs=40.2
Q ss_pred CeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChh-hhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 244 KTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSED-TLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 244 kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~-va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+.-+++||++... ...+.+...+.....+..+|++|.+.. +..........+++.+++.++....+.
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~ 203 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILS 203 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHH
Confidence 5679999999774 222333322222234567777776533 322122233689999999998877765
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=78.11 E-value=0.97 Score=41.74 Aligned_cols=89 Identities=11% Similarity=0.024 Sum_probs=46.7
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.||||||+.+++.... .....++++. ..+...+....... . ...+.+.+. +. -+|||||++..
T Consensus 65 tGKT~la~~i~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~----~---~~~~~~~~~-~~-~~lilDei~~~ 127 (202)
T 2w58_A 65 VGKTYLLAAIANELAK--RNVSSLIVYV------PELFRELKHSLQDQ----T---MNEKLDYIK-KV-PVLMLDDLGAE 127 (202)
T ss_dssp SSHHHHHHHHHHHHHT--TTCCEEEEEH------HHHHHHHHHC---C----C---CHHHHHHHH-HS-SEEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHH--cCCeEEEEEh------HHHHHHHHHHhccc----h---HHHHHHHhc-CC-CEEEEcCCCCC
Confidence 4779999999998763 2344666654 34455544332211 0 112334444 22 39999999663
Q ss_pred --cccccc--CC-CcCCC-CCCcEEEEecCCh
Q 038110 257 --LDLLAI--GI-PHGND-HKGCKILLTARSE 282 (667)
Q Consensus 257 --~~~~~l--~~-~~~~~-~~gs~iivTTr~~ 282 (667)
..|..- .. .+... ..+.++|+||...
T Consensus 128 ~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 128 AMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 444322 11 11111 2456788888753
No 207
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.08 E-value=11 Score=38.08 Aligned_cols=18 Identities=11% Similarity=-0.208 Sum_probs=15.3
Q ss_pred ceEecCCCCHHHHHHHHH
Q 038110 293 QNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 293 ~~~~l~~L~~~~s~~Lf~ 310 (667)
..+.+.+++.++..+++.
T Consensus 252 ~~i~~~~~~~~e~~~il~ 269 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILR 269 (368)
T ss_dssp EEEEECCCCHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHH
Confidence 458999999999988876
No 208
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.06 E-value=17 Score=37.86 Aligned_cols=138 Identities=14% Similarity=0.177 Sum_probs=73.5
Q ss_pred cCCCcccccchHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCC
Q 038110 154 SNKDYEAFESRMSTLNDILGALK---------------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQ 206 (667)
Q Consensus 154 ~~~~~~~~~gr~~~~~~i~~~l~---------------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~ 206 (667)
|...+..+.|.++.+++|.+.+. .|||+||++|.+..... | +.|..+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~--~---~~v~~s~ 250 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN--F---IFSPASG 250 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--E---EEEEGGG
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEehhh
Confidence 34456678888888877765441 24699999999987632 2 3333332
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcc--------c--------ccccCCCcC--C
Q 038110 207 SHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENL--------D--------LLAIGIPHG--N 268 (667)
Q Consensus 207 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~--------~--------~~~l~~~~~--~ 268 (667)
- .....+.+......+...-+....++|.+|++.... . ...+...+. .
T Consensus 251 l--------------~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 251 I--------------VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp T--------------CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred h--------------ccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 1 111111111111113333333678999999997430 0 111111111 1
Q ss_pred CCCCcEEEEecCChhhhhhcc-C---CcceEecCCCCHHHHHHHHH
Q 038110 269 DHKGCKILLTARSEDTLSRKM-D---SKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 269 ~~~gs~iivTTr~~~va~~~~-~---~~~~~~l~~L~~~~s~~Lf~ 310 (667)
...+-.||.||...+....+. . -...+.++..+.++-.++|+
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHH
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHH
Confidence 223456777887765442221 1 23468888888777777775
No 209
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.13 E-value=1.9 Score=39.76 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=7.5
Q ss_pred CCCCCCeEEeecCCC
Q 038110 548 HFPNLTSLELEVNDA 562 (667)
Q Consensus 548 ~L~~L~~L~l~~~~l 562 (667)
.-+.|++|+|+.|.+
T Consensus 96 ~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 96 TSPSLRVLNVESNFL 110 (197)
T ss_dssp HCSSCCEEECCSSBC
T ss_pred cCCccCeEecCCCcC
Confidence 334455555555544
No 210
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.60 E-value=21 Score=34.98 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=69.5
Q ss_pred CcccccchHHHHHHHHHhc---------------------------CCCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCC
Q 038110 157 DYEAFESRMSTLNDILGAL---------------------------KNPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHD 209 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l---------------------------~~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~ 209 (667)
....++|.+..++.+.+++ +.||||||+.+.+... .. ++.++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~-----~i~v~---- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN-----FISIK---- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CE-----EEEEC----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CC-----EEEEE----
Confidence 3455778777766665443 1256999999998764 11 23332
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcc------------c----ccccCCCcC--CCCC
Q 038110 210 IRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENL------------D----LLAIGIPHG--NDHK 271 (667)
Q Consensus 210 ~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~------------~----~~~l~~~~~--~~~~ 271 (667)
..++..... +. .......+.+........+|+||++.... . ...+...+. ....
T Consensus 82 ~~~l~~~~~---g~-----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 82 GPELLTMWF---GE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHHHHH---TT-----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred hHHHHhhhc---Cc-----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 233332221 11 11111223333322567999999997420 0 111111111 1123
Q ss_pred CcEEEEecCChhhhhh-cc---CCcceEecCCCCHHHHHHHHH
Q 038110 272 GCKILLTARSEDTLSR-KM---DSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 272 gs~iivTTr~~~va~~-~~---~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+..||.||........ .. .....+.+...+.++-.+++.
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~ 196 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 196 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHH
Confidence 4567777766533211 11 223578899999888777764
No 211
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.33 E-value=19 Score=37.42 Aligned_cols=138 Identities=13% Similarity=0.141 Sum_probs=72.8
Q ss_pred cCCCcccccchHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCC
Q 038110 154 SNKDYEAFESRMSTLNDILGALK---------------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQ 206 (667)
Q Consensus 154 ~~~~~~~~~gr~~~~~~i~~~l~---------------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~ 206 (667)
|...+..+.|.++.+++|.+.+. .|||.||++|.+..... | +.|+.+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~--f---~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT--F---LKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--E---EEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC--E---EEEehhh
Confidence 44556778899998888876541 24699999999977632 2 3333322
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc-------c-----c----ccccCCCcCC--
Q 038110 207 SHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN-------L-----D----LLAIGIPHGN-- 268 (667)
Q Consensus 207 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~-------~-----~----~~~l~~~~~~-- 268 (667)
+.....+.+......+...-+....++|++|++... . . ...+...+..
T Consensus 251 --------------l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 251 --------------LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp --------------GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred --------------hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 111111111110011333222345799999998632 0 0 0111111211
Q ss_pred CCCCcEEEEecCChhhhhhcc----CCcceEecCCCCHHHHHHHHH
Q 038110 269 DHKGCKILLTARSEDTLSRKM----DSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 269 ~~~gs~iivTTr~~~va~~~~----~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
...+-.||.||...+....+. .-...+.++..+.++-.++|+
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQ 362 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHH
Confidence 123445666887765442222 123478888888888777776
No 212
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.61 E-value=40 Score=34.90 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=71.6
Q ss_pred cCCCcccccchHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCC
Q 038110 154 SNKDYEAFESRMSTLNDILGALK---------------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQ 206 (667)
Q Consensus 154 ~~~~~~~~~gr~~~~~~i~~~l~---------------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~ 206 (667)
|...+..+.|.++.+++|.+.+. .|||.||++|.+..... | +.|+.+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~ 251 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSE 251 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGG
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHH
Confidence 34456667888888877765441 14599999999987632 2 2233221
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCcc-------c---------ccccCCCcC--
Q 038110 207 SHDIRKIQGEIADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWENL-------D---------LLAIGIPHG-- 267 (667)
Q Consensus 207 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~-------~---------~~~l~~~~~-- 267 (667)
+.....+.+. .... +.+.-+....++|.+|++.... . ...+...+.
T Consensus 252 --------------l~sk~vGese-k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 252 --------------LIQKYLGDGP-RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp --------------GCCSSSSHHH-HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred --------------hhhccCchHH-HHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 1111111111 1111 3333333567999999987430 0 001111111
Q ss_pred CCCCCcEEEEecCChhhhhhcc----CCcceEecCCCCHHHHHHHHH
Q 038110 268 NDHKGCKILLTARSEDTLSRKM----DSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 268 ~~~~gs~iivTTr~~~va~~~~----~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
....+-.||.||...+....+. .-...+.++..+.++-.++|.
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~ 363 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILG 363 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHH
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHH
Confidence 1223445677887766542222 123467788888877777775
No 213
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=72.99 E-value=1.1 Score=40.43 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=46.5
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCC-
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWE- 255 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~- 255 (667)
.||||||+.+++.......+. .+++ +..++...+.......... .+.+.+. +.-+|||||++.
T Consensus 49 ~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~llilDE~~~~ 112 (180)
T 3ec2_A 49 VGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKDT-------KFLKTVL--NSPVLVLDDLGSE 112 (180)
T ss_dssp SSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCCS-------HHHHHHH--TCSEEEEETCSSS
T ss_pred CCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchHH-------HHHHHhc--CCCEEEEeCCCCC
Confidence 478999999998764222222 2233 3455555554443221111 2333443 346899999984
Q ss_pred -ccccc--ccCCCcCC-CCCCcEEEEecCCh
Q 038110 256 -NLDLL--AIGIPHGN-DHKGCKILLTARSE 282 (667)
Q Consensus 256 -~~~~~--~l~~~~~~-~~~gs~iivTTr~~ 282 (667)
...|. .+...+.. ...|..||+||...
T Consensus 113 ~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 113 RLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 23342 12111111 12467788888653
No 214
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.23 E-value=15 Score=36.87 Aligned_cols=140 Identities=11% Similarity=0.033 Sum_probs=67.8
Q ss_pred CCcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHH
Q 038110 156 KDYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDKLFD-QAVFAEVSQSHDIRKIQGEIADK 220 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~ 220 (667)
.....++|.+..++.+..++.. ||||+|+.+.+...-. .+. ...-+..+....+..+ ++++..
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~i-r~~i~~ 99 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVV-RNQIKD 99 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHH-HHHHHH
Confidence 3445567877777777665432 4599999998865311 111 1222222222222211 111111
Q ss_pred hCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCChh-hhhhccCCcceEec
Q 038110 221 LGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSED-TLSRKMDSKQNFSV 297 (667)
Q Consensus 221 l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~~-va~~~~~~~~~~~l 297 (667)
+..... .+. +.+-++|+|++... ...+.+...+.......++|++|.... +..........+.+
T Consensus 100 ~~~~~~------------~~~-~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 100 FASTRQ------------IFS-KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp HHHBCC------------SSS-CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred HHhhcc------------cCC-CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEec
Confidence 110000 001 23678899998653 223333222222234556777665432 21111222347889
Q ss_pred CCCCHHHHHHHHH
Q 038110 298 GILKEEEAWSGEF 310 (667)
Q Consensus 298 ~~L~~~~s~~Lf~ 310 (667)
.+++.++..+.+.
T Consensus 167 ~~l~~~~~~~~l~ 179 (340)
T 1sxj_C 167 QPLPQEAIERRIA 179 (340)
T ss_dssp CCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 9999988766543
No 215
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=70.96 E-value=13 Score=42.70 Aligned_cols=140 Identities=9% Similarity=0.078 Sum_probs=68.0
Q ss_pred CCcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccC---CCC-C-EEEEEEeCCCCCHHHHHHH
Q 038110 156 KDYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAEND---KLF-D-QAVFAEVSQSHDIRKIQGE 216 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~---~~F-~-~~~wv~vs~~~~~~~i~~~ 216 (667)
.....++||+.++..++..+.. ||||+|+.+.+...-. ... . ..+.++.+.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 3455688999999999997643 5699999999875321 111 2 233333221100
Q ss_pred HHHHhCCCCCCCChhHHHH-HHHHHhc-CCeEEEEEeCCCCcc-------ccc---ccCCCcCCCCCCcEEEEecCChhh
Q 038110 217 IADKLGLTFHEESESGRAS-LCNQLKK-NKTILMILDNIWENL-------DLL---AIGIPHGNDHKGCKILLTARSEDT 284 (667)
Q Consensus 217 i~~~l~~~~~~~~~~~~~~-l~~~L~~-~kr~LlVLDdvw~~~-------~~~---~l~~~~~~~~~gs~iivTTr~~~v 284 (667)
+....+ ....... +.+.+.. +++.+|++|++.... .++ .+...+. . .+-.+|.+|.....
T Consensus 240 -----g~~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-~-~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 -----GAKYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-R-GELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-T-TCCCEEEEECHHHH
T ss_pred -----cCccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-C-CCeEEEEecCchHH
Confidence 000000 1111122 3333332 367999999997642 121 1221221 1 12345555443321
Q ss_pred ---h--hhccCCcceEecCCCCHHHHHHHHH
Q 038110 285 ---L--SRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 285 ---a--~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
. ......-..+.+++++.++..+++.
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~ 342 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILR 342 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHH
Confidence 1 1111122358999999999998886
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=70.59 E-value=17 Score=38.32 Aligned_cols=133 Identities=11% Similarity=0.110 Sum_probs=65.3
Q ss_pred CcccccchHHHHHHHHHhcC--------------CCCcHHHHHHHHHhccCC---CC-CE-EEEEEeCCCCCHHHHHHHH
Q 038110 157 DYEAFESRMSTLNDILGALK--------------NPDTTLAKEVAWKAENDK---LF-DQ-AVFAEVSQSHDIRKIQGEI 217 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~--------------~~~TtLa~~vy~~~~~~~---~F-~~-~~wv~vs~~~~~~~i~~~i 217 (667)
....++||+.++..++..+. .|||++|+.+.+...-.. .+ +. .+.++.+
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------ 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------ 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------
Confidence 34568899999999998873 367999999998753110 01 11 1122222
Q ss_pred HHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhh----h--hhccCC
Q 038110 218 ADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDT----L--SRKMDS 291 (667)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~v----a--~~~~~~ 291 (667)
....+........+.+.+...+..+|++| -.....+.+...+.. ..-++|.+|..... . ......
T Consensus 246 -----~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~R 316 (468)
T 3pxg_A 246 -----TKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERR 316 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred -----ccccchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHh
Confidence 00000001111123333333567899999 222222334444421 12355555544331 0 001112
Q ss_pred cceEecCCCCHHHHHHHHH
Q 038110 292 KQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 292 ~~~~~l~~L~~~~s~~Lf~ 310 (667)
-..+.+++++.++...++.
T Consensus 317 f~~i~v~~p~~e~~~~iL~ 335 (468)
T 3pxg_A 317 FQPIQVDQPSVDESIQILQ 335 (468)
T ss_dssp EEEEECCCCCHHHHHHHHH
T ss_pred CccceeCCCCHHHHHHHHH
Confidence 2368999999999888875
No 217
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=69.63 E-value=1.6 Score=37.93 Aligned_cols=37 Identities=5% Similarity=0.037 Sum_probs=20.0
Q ss_pred EEEEEeCCCCc--ccccccCCCcCCCCCCcEEEEecCCh
Q 038110 246 ILMILDNIWEN--LDLLAIGIPHGNDHKGCKILLTARSE 282 (667)
Q Consensus 246 ~LlVLDdvw~~--~~~~~l~~~~~~~~~gs~iivTTr~~ 282 (667)
-.|+||++... .....+...+.......+||.||...
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 46899999765 22222322222233345777777653
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.19 E-value=49 Score=34.32 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=27.1
Q ss_pred CCCcccccchHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHhc
Q 038110 155 NKDYEAFESRMSTLNDILGALK---------------------------NPDTTLAKEVAWKAE 191 (667)
Q Consensus 155 ~~~~~~~~gr~~~~~~i~~~l~---------------------------~~~TtLa~~vy~~~~ 191 (667)
...+..+.|.++.+++|.+.+. .|||+||++|.+...
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456678888888888765441 256999999999776
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.83 E-value=17 Score=41.15 Aligned_cols=135 Identities=11% Similarity=0.107 Sum_probs=66.7
Q ss_pred CCcccccchHHHHHHHHHhcC--------------CCCcHHHHHHHHHhccC---CC-CCEEEEEEeCCCCCHHHHHHHH
Q 038110 156 KDYEAFESRMSTLNDILGALK--------------NPDTTLAKEVAWKAEND---KL-FDQAVFAEVSQSHDIRKIQGEI 217 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~--------------~~~TtLa~~vy~~~~~~---~~-F~~~~wv~vs~~~~~~~i~~~i 217 (667)
.....++||+.+++.++..+. .|||++|+.+.+...-. .. ..+. ++.++-
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~----------- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM----------- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC-------------
T ss_pred CCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc-----------
Confidence 345568899999999999873 36799999999875211 00 1111 111111
Q ss_pred HHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCcccccccCCCcCCCCCCcEEEEecCChhh----h--hhccCC
Q 038110 218 ADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWENLDLLAIGIPHGNDHKGCKILLTARSEDT----L--SRKMDS 291 (667)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~~~~~~l~~~~~~~~~gs~iivTTr~~~v----a--~~~~~~ 291 (667)
+....+........+.+.....+..+|++| .....-+.+...+. ...-++|.||..... . ......
T Consensus 245 ----g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 ----GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred ----cccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 111111111111223333333567899999 22222233333332 223456655554431 0 000111
Q ss_pred cceEecCCCCHHHHHHHHH
Q 038110 292 KQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 292 ~~~~~l~~L~~~~s~~Lf~ 310 (667)
-..+.++.++.++..+++.
T Consensus 317 f~~i~v~~p~~~~~~~il~ 335 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQ 335 (758)
T ss_dssp EEEEECCCCCHHHHHHHHH
T ss_pred CcEEEeCCCCHHHHHHHHH
Confidence 2468999999999988876
No 220
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=64.64 E-value=4.8 Score=37.04 Aligned_cols=83 Identities=10% Similarity=0.037 Sum_probs=53.8
Q ss_pred CCCCccEEEccCC-CCcc---ccccHHHHhCCCCCcEEEcCCCCCc-----cCCccccCCCcccEEecCC-cc-----cc
Q 038110 470 ECPQLKLFSMPAE-KNSF---FAIPHNLFRSMLQVRVLDLTDMNLL-----SLPSSIGLLTNLHTLCLYG-GV-----GV 534 (667)
Q Consensus 470 ~~~~Lr~L~l~~~-~~~~---~~lp~~~~~~l~~Lr~L~L~~~~i~-----~lP~si~~L~~L~~L~L~~-~l-----~~ 534 (667)
.-+.|+.|+++++ .... ..+-+.+ ..-+.|+.|+|++|.|. .|-+.+..=+.|++|+|+. .| ..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 4567888998875 4320 1123333 67788999999999876 2444555567799999987 22 23
Q ss_pred cCCCCccChhhhcCCCCCCeEEeecC
Q 038110 535 VDGVKNASLEELKHFPNLTSLELEVN 560 (667)
Q Consensus 535 LP~~~~~~~~~l~~L~~L~~L~l~~~ 560 (667)
|- +.+..-+.|+.|+|+++
T Consensus 118 la-------~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LL-------RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HH-------HHTTTTCCCSEEECCCC
T ss_pred HH-------HHHhhCCceeEEECCCC
Confidence 33 45555667888888754
No 221
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=59.87 E-value=45 Score=37.55 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=74.4
Q ss_pred CCcccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhccCC----CCCEEEEE-EeCCCCCHHHHHHH
Q 038110 156 KDYEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAENDK----LFDQAVFA-EVSQSHDIRKIQGE 216 (667)
Q Consensus 156 ~~~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~~~~----~F~~~~wv-~vs~~~~~~~i~~~ 216 (667)
.....++||+.++..+++.|.. ||||+|+.+.+...... .+.+.+|. ..+. +
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l--- 253 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L--- 253 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H---
Confidence 3455688999999999998753 56999999998653211 12333332 1111 0
Q ss_pred HHHHhCCCCCCCChhHHHH-HHHHHhcCCeEEEEEeCCCCcc--------c---ccccCCCcCCCCCCcEEEEecCChhh
Q 038110 217 IADKLGLTFHEESESGRAS-LCNQLKKNKTILMILDNIWENL--------D---LLAIGIPHGNDHKGCKILLTARSEDT 284 (667)
Q Consensus 217 i~~~l~~~~~~~~~~~~~~-l~~~L~~~kr~LlVLDdvw~~~--------~---~~~l~~~~~~~~~gs~iivTTr~~~v 284 (667)
+.+............ +.+.+...+..+|++||+.... . .+.+...+. ..+-++|.+|.....
T Consensus 254 ----~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 ----LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF 327 (758)
T ss_dssp -----CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHH
T ss_pred ----hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHH
Confidence 011111111111222 4444443456999999997540 1 122333332 223456666654332
Q ss_pred hhh------ccCCcceEecCCCCHHHHHHHHH
Q 038110 285 LSR------KMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 285 a~~------~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
... ....-..+.+...+.++..+++.
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~ 359 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIIN 359 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHH
Confidence 100 01111368999999999888886
No 222
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=58.41 E-value=10 Score=36.38 Aligned_cols=68 Identities=10% Similarity=-0.050 Sum_probs=35.9
Q ss_pred CCeEEEEEeCCCCcc-----------------cccccCCCcCCC---CCCcEEEEecCChhhhh-hcc---CCcceEecC
Q 038110 243 NKTILMILDNIWENL-----------------DLLAIGIPHGND---HKGCKILLTARSEDTLS-RKM---DSKQNFSVG 298 (667)
Q Consensus 243 ~kr~LlVLDdvw~~~-----------------~~~~l~~~~~~~---~~gs~iivTTr~~~va~-~~~---~~~~~~~l~ 298 (667)
.+..+|+|||+.... ....+...+... .....||.||....... ... .-...+.+.
T Consensus 102 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~ 181 (268)
T 2r62_A 102 QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181 (268)
T ss_dssp SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCC
T ss_pred cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEec
Confidence 456899999995421 122233222211 12245677776654221 011 123467788
Q ss_pred CCCHHHHHHHHH
Q 038110 299 ILKEEEAWSGEF 310 (667)
Q Consensus 299 ~L~~~~s~~Lf~ 310 (667)
..+.++-.+++.
T Consensus 182 ~p~~~~r~~il~ 193 (268)
T 2r62_A 182 KPDFNGRVEILK 193 (268)
T ss_dssp CCCTTTHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 888877776653
No 223
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=53.87 E-value=15 Score=36.33 Aligned_cols=116 Identities=9% Similarity=0.087 Sum_probs=61.2
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.||||||+.+.+..... .+ ..++++ ...+..++...+... ......+.+. +.-+|+|||+...
T Consensus 48 tGKT~la~~i~~~~~~~-~~-~~~~i~------~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~vL~iDEi~~l 110 (324)
T 1l8q_A 48 TGKTHLLQAAGNEAKKR-GY-RVIYSS------ADDFAQAMVEHLKKG-------TINEFRNMYK--SVDLLLLDDVQFL 110 (324)
T ss_dssp SSHHHHHHHHHHHHHHT-TC-CEEEEE------HHHHHHHHHHHHHHT-------CHHHHHHHHH--TCSEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHHC-CC-EEEEEE------HHHHHHHHHHHHHcC-------cHHHHHHHhc--CCCEEEEcCcccc
Confidence 36799999999876422 12 234443 334444444443210 0111333343 3579999999764
Q ss_pred c---cc-cccCCCcCC-CCCCcEEEEecCChhh-----h---hhccCCcceEecCCCCHHHHHHHHH
Q 038110 257 L---DL-LAIGIPHGN-DHKGCKILLTARSEDT-----L---SRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 257 ~---~~-~~l~~~~~~-~~~gs~iivTTr~~~v-----a---~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
. .+ +.+...+.. ...|..||+||....- . .........+.+++ +.++-..++.
T Consensus 111 ~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 111 SGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 2 11 222222211 1245678888764321 0 00112235789999 9999888876
No 224
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=53.63 E-value=19 Score=31.80 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=27.5
Q ss_pred cccccchHHHHHHHHHhcCC--------------CCcHHHHHHHHHhc
Q 038110 158 YEAFESRMSTLNDILGALKN--------------PDTTLAKEVAWKAE 191 (667)
Q Consensus 158 ~~~~~gr~~~~~~i~~~l~~--------------~~TtLa~~vy~~~~ 191 (667)
...++|++.+++.+.+.+.. ||||+|+.+.+...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999987743 46999999998753
No 225
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=50.02 E-value=32 Score=33.89 Aligned_cols=114 Identities=16% Similarity=-0.006 Sum_probs=64.9
Q ss_pred CCcHHHHHHHHHhc-cC-CCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCC
Q 038110 178 PDTTLAKEVAWKAE-ND-KLFDQAVFAEVSQ-SHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIW 254 (667)
Q Consensus 178 ~~TtLa~~vy~~~~-~~-~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw 254 (667)
||||+|+.+.+... .. .|.+. .++..+. ...+.+ .+++++.+..... .+++-++|+|++.
T Consensus 30 GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~~~p~---------------~~~~kvviIdead 92 (305)
T 2gno_A 30 YPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNYSPE---------------LYTRKYVIVHDCE 92 (305)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTSCCS---------------SSSSEEEEETTGG
T ss_pred CHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHhhccc---------------cCCceEEEeccHH
Confidence 35899988876421 11 23443 4454432 333333 3445555542221 1456788999997
Q ss_pred Cc--ccccccCCCcCCCCCCcEEEEecCCh-hhhhhccCCcceEecCCCCHHHHHHHHH
Q 038110 255 EN--LDLLAIGIPHGNDHKGCKILLTARSE-DTLSRKMDSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 255 ~~--~~~~~l~~~~~~~~~gs~iivTTr~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
.. ...+.+...+......+.+|++|.+. .+... .... .+++.++++++....+.
T Consensus 93 ~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~t-I~SR-~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 93 RMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPT-IKSR-VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHH-HHTT-SEEEECCCCHHHHHHHH
T ss_pred HhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHH-HHce-eEeCCCCCHHHHHHHHH
Confidence 65 34455544444444566777766544 33322 2233 89999999999888765
No 226
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=47.94 E-value=65 Score=34.05 Aligned_cols=135 Identities=13% Similarity=0.157 Sum_probs=68.3
Q ss_pred CcccccchHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCC
Q 038110 157 DYEAFESRMSTLNDILGALK---------------------------NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHD 209 (667)
Q Consensus 157 ~~~~~~gr~~~~~~i~~~l~---------------------------~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~ 209 (667)
.+..++|.+..++++.+++. .|||++|+.+.+... ..| +.|+.
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~~f---v~vn~----- 271 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFF---FLING----- 271 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--SEE---EEEEH-----
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--CCE---EEEEc-----
Confidence 34567898888888876542 246999999988653 222 22321
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc--------c-----cccccCCCcC--CCCCCcE
Q 038110 210 IRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN--------L-----DLLAIGIPHG--NDHKGCK 274 (667)
Q Consensus 210 ~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~--------~-----~~~~l~~~~~--~~~~gs~ 274 (667)
..+ .. ...+........+.+....++..+|+||++... . ....+...+. ....+-+
T Consensus 272 -~~l----~~----~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 272 -PEI----MS----KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp -HHH----HT----SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred -hHh----hh----hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111 11 111100111111222333367789999999421 0 0111211111 1122445
Q ss_pred EEEecCChhhhhhcc----CCcceEecCCCCHHHHHHHHH
Q 038110 275 ILLTARSEDTLSRKM----DSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 275 iivTTr~~~va~~~~----~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
||.||....-..... .-...+.+...+.++-.+++.
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~ 382 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHH
Confidence 666666553211111 223468899999988888875
No 227
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=46.56 E-value=78 Score=27.23 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 038110 54 IEKKVEKLLDSGNNAIVEAEKFV 76 (667)
Q Consensus 54 ~~~~~~~Wl~~l~~~ayd~ed~l 76 (667)
.+.-|..||.+...-|..+.+-.
T Consensus 126 N~~LV~RWM~rk~qEAe~MN~an 148 (152)
T 3a7p_A 126 HSQLVARWLKKTEKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677788887777666655544
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=45.93 E-value=1.2e+02 Score=31.96 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=36.7
Q ss_pred CCeEEEEEeCCCCcc----------------cccccCCCcC--CCCCCcEEEEecCChhhhhhc-c---CCcceEecCCC
Q 038110 243 NKTILMILDNIWENL----------------DLLAIGIPHG--NDHKGCKILLTARSEDTLSRK-M---DSKQNFSVGIL 300 (667)
Q Consensus 243 ~kr~LlVLDdvw~~~----------------~~~~l~~~~~--~~~~gs~iivTTr~~~va~~~-~---~~~~~~~l~~L 300 (667)
+...+|+||++.... ....+...+. ....+-.||.||...+..... . .-...+.++..
T Consensus 107 ~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~P 186 (476)
T 2ce7_A 107 HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186 (476)
T ss_dssp TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCC
Confidence 567999999995420 1122211111 112355677777776543211 1 12237788888
Q ss_pred CHHHHHHHHH
Q 038110 301 KEEEAWSGEF 310 (667)
Q Consensus 301 ~~~~s~~Lf~ 310 (667)
+.++-.+++.
T Consensus 187 d~~~R~~Il~ 196 (476)
T 2ce7_A 187 DMLGRKKILE 196 (476)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8776666654
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=43.63 E-value=1.8e+02 Score=32.88 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=45.7
Q ss_pred cCCeEEEEEeCCCCcc--------cc-----cccCCCcCC--CCCCcEEEEecCChhhhhhcc----CCcceEecCCCCH
Q 038110 242 KNKTILMILDNIWENL--------DL-----LAIGIPHGN--DHKGCKILLTARSEDTLSRKM----DSKQNFSVGILKE 302 (667)
Q Consensus 242 ~~kr~LlVLDdvw~~~--------~~-----~~l~~~~~~--~~~gs~iivTTr~~~va~~~~----~~~~~~~l~~L~~ 302 (667)
.....+|++|++.... +. ..+...+.. ...+-.||.||...+....+. .-...+++...+.
T Consensus 295 ~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~ 374 (806)
T 3cf2_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCH
T ss_pred HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCH
Confidence 3567999999996431 00 111111110 112224555666544322111 2235788888888
Q ss_pred HHHHHHHH--------------HHHHHHhCCcc
Q 038110 303 EEAWSGEF--------------KWVAKECAGLP 321 (667)
Q Consensus 303 ~~s~~Lf~--------------~~i~~~c~GlP 321 (667)
++=.++|. ..+++++.|.-
T Consensus 375 ~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp HHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCC
T ss_pred HHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCC
Confidence 88888887 78899998875
No 230
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=36.83 E-value=1.4e+02 Score=25.20 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038110 23 IENLKAEVGKLKDGTESIQHAVD 45 (667)
Q Consensus 23 ~~~~~~~~~~L~~~l~~i~~~l~ 45 (667)
++.+..++..++.+|..|+.++.
T Consensus 56 l~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 56 LETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 231
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=36.33 E-value=5.2 Score=34.43 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=18.6
Q ss_pred ccchHHHHHHHHHhc----------------CCCCcHHHHHHHHHh
Q 038110 161 FESRMSTLNDILGAL----------------KNPDTTLAKEVAWKA 190 (667)
Q Consensus 161 ~~gr~~~~~~i~~~l----------------~~~~TtLa~~vy~~~ 190 (667)
++|++..+.++.+.+ +.|||++|+.+.+..
T Consensus 6 ~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp --CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 456666666555543 236799999998753
No 232
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=34.40 E-value=2.8e+02 Score=25.63 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=21.3
Q ss_pred CcEEEEecCChhhhh-hcc---CCcceEecCCCCHHHHHHHHH
Q 038110 272 GCKILLTARSEDTLS-RKM---DSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 272 gs~iivTTr~~~va~-~~~---~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+..||.||....... ... .....+.+...+.++-.+++.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~ 192 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILK 192 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHH
Confidence 446666776654221 111 123467788778776666553
No 233
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=31.95 E-value=87 Score=32.83 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC------C-------CCCChhHH------HH-H
Q 038110 178 PDTTLAKEVAWKAENDKLFDQAVFAEVSQSH-DIRKIQGEIADKLGLT------F-------HEESESGR------AS-L 236 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~------~-------~~~~~~~~------~~-l 236 (667)
|||+|++.+.+... +.+-+.++++-+.+.. .+.++.+++.+.=..+ . .+.....+ .. +
T Consensus 165 GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a~ti 243 (482)
T 2ck3_D 165 GKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTV 243 (482)
T ss_dssp SHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46999999988753 1345778888888866 4577777777652221 1 01111111 11 6
Q ss_pred HHHHhc--CCeEEEEEeCCCCc
Q 038110 237 CNQLKK--NKTILMILDNIWEN 256 (667)
Q Consensus 237 ~~~L~~--~kr~LlVLDdvw~~ 256 (667)
.+++.. +|.+||++||+..-
T Consensus 244 AEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 244 AEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp HHHHHHTTCSCEEEEEECTHHH
T ss_pred HHHHHHhcCCcEEEEeccHHHH
Confidence 777753 89999999998543
No 234
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=29.03 E-value=73 Score=30.83 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=34.6
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCeEEEEEeCCCCc
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESESGRASLCNQLKKNKTILMILDNIWEN 256 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~~kr~LlVLDdvw~~ 256 (667)
.||||+|+.+.+..... -...+.+..+...+.. ....+ ++.............+.+.+.....-+|+||++...
T Consensus 58 tGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~-~~~~l---~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 58 VGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKH-AVSRL---IGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp SSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTT-HHHHH---HCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred cCHHHHHHHHHHHHcCC--CcceEEeecccccccc-cHHHh---cCCCCccccccccchHHHHHHhCCCeEEEEeChhhc
Confidence 47899999999876421 1123444444322211 11111 222111100000011444443345579999999754
No 235
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=28.83 E-value=76 Score=31.44 Aligned_cols=84 Identities=5% Similarity=-0.094 Sum_probs=50.8
Q ss_pred CCeEEEEEeCCCC---cccccccCCCcCCCCCCcEEEEecCC-------hhhhhhccCCcceEecCCCCHHHHHHHHH--
Q 038110 243 NKTILMILDNIWE---NLDLLAIGIPHGNDHKGCKILLTARS-------EDTLSRKMDSKQNFSVGILKEEEAWSGEF-- 310 (667)
Q Consensus 243 ~kr~LlVLDdvw~---~~~~~~l~~~~~~~~~gs~iivTTr~-------~~va~~~~~~~~~~~l~~L~~~~s~~Lf~-- 310 (667)
+++=++|+|++.. ...++.+...+.....++.+|++|.. ..+..........++..+++.++......
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4567888899865 24566665555444457777766543 23332223344688899999887765544
Q ss_pred -------------HHHHHHhCCcchHHHH
Q 038110 311 -------------KWVAKECAGLPVSIVT 326 (667)
Q Consensus 311 -------------~~i~~~c~GlPLai~~ 326 (667)
..+++.++|.+.++..
T Consensus 155 ~~~~g~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNLELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTCEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHhchHHHHHHH
Confidence 4566666666655543
No 236
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=27.67 E-value=4.3e+02 Score=34.41 Aligned_cols=224 Identities=8% Similarity=-0.016 Sum_probs=111.4
Q ss_pred CCCcHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHhcCCeEEEEEeCCCC
Q 038110 177 NPDTTLAKEVAWKAENDKLFDQAVFAEVSQSHDIRKIQGEIADKLGLTFHEESE-SGRASLCNQLKKNKTILMILDNIWE 255 (667)
Q Consensus 177 ~~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~-~~~~~l~~~L~~~kr~LlVLDdvw~ 255 (667)
.|||++|+.+..... .+ ..+.++.|..-+...+++.+-..+......... ... -..+|+.+|.+||+.-
T Consensus 1278 tGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P------~~~gk~~VlFiDEinm 1347 (2695)
T 4akg_A 1278 SGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLP------KSDIKNLVLFCDEINL 1347 (2695)
T ss_dssp SSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEE------BSSSSCEEEEEETTTC
T ss_pred CCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccC------CCCCceEEEEeccccc
Confidence 367999987776432 23 345677777767777666665554321100000 000 0027889999999643
Q ss_pred c--ccc------cccCCCcC-----CCCCC-------cEEEEecCChh-hh-----hhccCCcceEecCCCCHHHHHHHH
Q 038110 256 N--LDL------LAIGIPHG-----NDHKG-------CKILLTARSED-TL-----SRKMDSKQNFSVGILKEEEAWSGE 309 (667)
Q Consensus 256 ~--~~~------~~l~~~~~-----~~~~g-------s~iivTTr~~~-va-----~~~~~~~~~~~l~~L~~~~s~~Lf 309 (667)
. +.| +.+...+. ....+ ..+|.+|.-.. .. .+....-..+.+...+.++-..+|
T Consensus 1348 p~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~ 1427 (2695)
T 4akg_A 1348 PKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIY 1427 (2695)
T ss_dssp SCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHH
T ss_pred ccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHH
Confidence 2 211 11111111 11111 22333332211 10 011112247888888888888888
Q ss_pred HHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHhcCCC---CcCchHHHHHHHHHHhhh----hcccHHHHHHHHhH
Q 038110 310 FKWVAKECAGLPVSIVTVSRALRNKSLFEWKDALQQLRRPI---STNFKDELKQIFLLIGYT----YVAFIDDLIWYSIG 382 (667)
Q Consensus 310 ~~~i~~~c~GlPLai~~~g~~L~~k~~~~W~~~l~~l~~~~---~~~l~~~lk~cfly~s~f----~~i~~~~Li~~Wia 382 (667)
..-+-.... .+-.+..++..|..-+.+-|..+...+.... |.=-+.++-+.|.-+... ..-+.+.++++|+-
T Consensus 1428 ~~il~~~l~-~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~H 1506 (2695)
T 4akg_A 1428 EIYYKAIFK-LVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAY 1506 (2695)
T ss_dssp HHHHHHHTT-SSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHH
Confidence 633222222 2223444455555456677888777763221 111256666666554443 23467899999998
Q ss_pred cCCC--CCcccHHHHHHHHHHHHHHHHHccc
Q 038110 383 LGLF--QGIKNMEEARAGVRTLVNKLKASCM 411 (667)
Q Consensus 383 eg~i--~~~~~~e~~~~~~~~li~~L~~~~l 411 (667)
|+.= ...-..++-...+.+++.+.+...|
T Consensus 1507 E~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f 1537 (2695)
T 4akg_A 1507 EAWRIFADRLVGVKEKNSFEQLLYETVDKYL 1537 (2695)
T ss_dssp HHHHHHTTTCCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 8641 1111111224456666666555444
No 237
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=26.39 E-value=2.5e+02 Score=25.51 Aligned_cols=79 Identities=11% Similarity=0.169 Sum_probs=44.2
Q ss_pred CCCCcHHHHHHHHHhccCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCChhHH---HH-HH
Q 038110 176 KNPDTTLAKEVAWKAENDK----LFDQAVFAEVSQSHDIRKIQGEIADKLGLTFH----------EESESGR---AS-LC 237 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~~~~---~~-l~ 237 (667)
+.||||||+.+........ .-..++|++....++...+. .+++.++.... .....+. .. +.
T Consensus 34 GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (243)
T 1n0w_A 34 RTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQAS 112 (243)
T ss_dssp TSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHHHH
Confidence 3478999999987543211 13578999887766655543 34455543210 0111111 11 44
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 038110 238 NQLKKNKTILMILDNIWE 255 (667)
Q Consensus 238 ~~L~~~kr~LlVLDdvw~ 255 (667)
+.+...+--+||||.+..
T Consensus 113 ~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 113 AMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHSCEEEEEEETSSG
T ss_pred HHHhcCCceEEEEeCchH
Confidence 455434667888898754
No 238
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=26.25 E-value=41 Score=18.20 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q 038110 56 KKVEKLLDSGNNA 68 (667)
Q Consensus 56 ~~~~~Wl~~l~~~ 68 (667)
+.|+.|++++|-.
T Consensus 8 DSV~rWmeDLr~M 20 (22)
T 3ro3_B 8 DSVQRWMEDLKLM 20 (26)
T ss_pred HHHHHHHHHHHhh
Confidence 4688999988753
No 239
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=25.63 E-value=71 Score=23.97 Aligned_cols=32 Identities=9% Similarity=0.156 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q 038110 36 GTESIQHAVDEAKRKGEEIEKKVEKLLDSGNNAIVEAEK 74 (667)
Q Consensus 36 ~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~l~~~ayd~ed 74 (667)
.|..|....+.++.. ....++++.++.|..+|
T Consensus 38 KLRdiE~l~q~~e~e-------~~~l~~~I~~ILYat~~ 69 (75)
T 3mtu_A 38 KLRNIELICQENEGE-------NDPVLQRIVDILYATDE 69 (75)
T ss_dssp HHHHHHHHHHHTGGG-------TCHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHHHHHHhh-------hHHHHHHHHHHHhccCc
Confidence 555555555544321 22456777777776553
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=24.64 E-value=4.5e+02 Score=24.81 Aligned_cols=67 Identities=7% Similarity=0.066 Sum_probs=35.2
Q ss_pred CCeEEEEEeCCCCccc-------------ccccCCCcCCC--CCCcEEEEecCChhhhhhcc----CCcceEecCCCCHH
Q 038110 243 NKTILMILDNIWENLD-------------LLAIGIPHGND--HKGCKILLTARSEDTLSRKM----DSKQNFSVGILKEE 303 (667)
Q Consensus 243 ~kr~LlVLDdvw~~~~-------------~~~l~~~~~~~--~~gs~iivTTr~~~va~~~~----~~~~~~~l~~L~~~ 303 (667)
....++++|++..... ...+...+..+ ....-++.+|....+...+. .-...+.++..+.+
T Consensus 102 ~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~ 181 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181 (274)
T ss_dssp TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHH
T ss_pred cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHH
Confidence 4568999999965210 01111112111 12344566777766542111 23456778877777
Q ss_pred HHHHHH
Q 038110 304 EAWSGE 309 (667)
Q Consensus 304 ~s~~Lf 309 (667)
+-.++|
T Consensus 182 ~r~~il 187 (274)
T 2x8a_A 182 DRLAIL 187 (274)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 241
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=24.62 E-value=3e+02 Score=22.74 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHHH
Q 038110 22 NIENLKAEVGKLKDGTESIQHAVDEAKRKG-EEIEKKVEKLLDSGNNAIVEAEKFV 76 (667)
Q Consensus 22 ~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~-~~~~~~~~~Wl~~l~~~ayd~ed~l 76 (667)
....+..+++.++++|..++..+....... ...+.-+..|-.--+++|+++-+.+
T Consensus 8 ~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~ 63 (122)
T 3viq_A 8 RRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPM 63 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999988777654 2235667778888888877765543
No 242
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.16 E-value=2.4e+02 Score=21.60 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhH
Q 038110 12 QFSYLRSYNNNIENLKAEVGKLKDGTESIQHAVDEAKRKGEEIEKKVEKLLDSGNNAIVEAEKFVGDE 79 (667)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~l~~~ayd~ed~ld~~ 79 (667)
++|| ...+-+..++.+|..|..++..++..|.+.+-.. .....+.....++..+-.+.+...++.
T Consensus 15 KLSy--keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~-~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 15 KLSY--KLQRELEQLPQLLEDLEAKLEALQTQVADASFFS-QPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp SCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 3334578899999999999999999998766322 124567788888888888888776654
No 243
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=22.19 E-value=1.6e+02 Score=31.03 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CC-------CCChhH------HHH-
Q 038110 178 PDTTLAKEVAWKAENDKLFDQAVFAEVSQSH-DIRKIQGEIADKLGLT-------FH-------EESESG------RAS- 235 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~-------~~~~~~------~~~- 235 (667)
|||+|++.+.+.... .|-+.++++-+.+.. .+.++..++.+.=..+ .. +..... ..-
T Consensus 177 GKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~alt 255 (498)
T 1fx0_B 177 GKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALT 255 (498)
T ss_dssp SHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHHHHH
T ss_pred CchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 469999999887531 345788999998876 4567777776542111 00 111111 122
Q ss_pred HHHHHhc--CCeEEEEEeCCCC
Q 038110 236 LCNQLKK--NKTILMILDNIWE 255 (667)
Q Consensus 236 l~~~L~~--~kr~LlVLDdvw~ 255 (667)
+.+++.. +|.+||++||+..
T Consensus 256 iAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 256 MAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp THHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHhcCCcEEEEeccHHH
Confidence 7788864 7999999999854
No 244
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=21.79 E-value=1.3e+02 Score=31.25 Aligned_cols=76 Identities=18% Similarity=0.276 Sum_probs=47.2
Q ss_pred CCcHHHHHHHHHhccCCCCC----EEEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCChhHH------HH-HHH
Q 038110 178 PDTTLAKEVAWKAENDKLFD----QAVFAEVSQSH-DIRKIQGEIADKLGL-------TFHEESESGR------AS-LCN 238 (667)
Q Consensus 178 ~~TtLa~~vy~~~~~~~~F~----~~~wv~vs~~~-~~~~i~~~i~~~l~~-------~~~~~~~~~~------~~-l~~ 238 (667)
|||+|+..+.+.... +-+ .++++-+.+.. .+.++.+++.+.=.. ...+.+...+ .. +.+
T Consensus 163 GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~tiAE 240 (465)
T 3vr4_D 163 PHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAE 240 (465)
T ss_dssp CHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 469999999988763 223 67788777755 456666665543101 1111122221 11 778
Q ss_pred HHhc--CCeEEEEEeCCCC
Q 038110 239 QLKK--NKTILMILDNIWE 255 (667)
Q Consensus 239 ~L~~--~kr~LlVLDdvw~ 255 (667)
++.. +|.+||++||+..
T Consensus 241 yfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 241 YLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHTTCCEEEEEEECHHH
T ss_pred HHHHhcCCeEEEEEcChHH
Confidence 8862 8999999999964
No 245
>4gow_A Potassium voltage-gated channel subfamily KQT MEM; protein complex, protein binding, ION channel, calmodulin, P channel; 2.60A {Homo sapiens}
Probab=21.70 E-value=19 Score=25.98 Aligned_cols=32 Identities=3% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHhhhhhccccccchHHHhHhhhhHHHHHHHHHHH
Q 038110 69 IVEAEKFVGDEAAANKQCFKGLCANLKIRIQHSTEAPRQLEAIVKL 114 (667)
Q Consensus 69 ayd~ed~ld~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i 114 (667)
-||+-|+|+.|..+. ..+-.+|+.+..|++.+
T Consensus 34 PYDVkDVIEQYSaGH--------------ldml~RiK~LQ~RlDqi 65 (72)
T 4gow_A 34 PYDVKDVIEQYSAGH--------------LDMLGRIKSLQTRVDQI 65 (72)
T ss_dssp ----------------------------------------------
T ss_pred cccHHHHHHHHhhhH--------------HHHHHHHHHHHHHHHHH
Confidence 699999999987543 13456677777777766
No 246
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=21.48 E-value=4.9e+02 Score=27.26 Aligned_cols=39 Identities=5% Similarity=-0.007 Sum_probs=22.8
Q ss_pred CcEEEEecCChhhhhhcc----CCcceEecCCCCHHHHHHHHH
Q 038110 272 GCKILLTARSEDTLSRKM----DSKQNFSVGILKEEEAWSGEF 310 (667)
Q Consensus 272 gs~iivTTr~~~va~~~~----~~~~~~~l~~L~~~~s~~Lf~ 310 (667)
+..|+.||...++..... .-...+.++..+.++-.+++.
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~ 211 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 211 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHH
Confidence 445666777766542111 123477888888876666653
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=20.72 E-value=2.6e+02 Score=27.22 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=31.6
Q ss_pred CCCCcHHHHHHHHHhccCCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 038110 176 KNPDTTLAKEVAWKAENDKL----FDQAVFAEVSQSHDIRKIQGEIADKLGL 223 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 223 (667)
+.||||||..+......... =..++|++....|+..++.+ +++.++.
T Consensus 117 GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~ 167 (324)
T 2z43_A 117 GSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGL 167 (324)
T ss_dssp TSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCC
Confidence 34779999999876432210 24689999988888777653 4555554
No 248
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=20.67 E-value=2.3e+02 Score=27.51 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCCcHHHHHHHHHhccCC---------CC-----CEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 038110 176 KNPDTTLAKEVAWKAENDK---------LF-----DQAVFAEVSQSHDIRKIQGEIADKLGL 223 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~---------~F-----~~~~wv~vs~~~~~~~i~~~i~~~l~~ 223 (667)
+.||||||..+........ .. ..++|++....|+..++.+ +++.++.
T Consensus 108 gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 108 GSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 3478999999887642211 11 4689999988888877764 4555554
No 249
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=20.36 E-value=4e+02 Score=26.20 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=31.5
Q ss_pred CCCCcHHHHHHHHHhccCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 038110 176 KNPDTTLAKEVAWKAENDK----LFDQAVFAEVSQSHDIRKIQGEIADKLGL 223 (667)
Q Consensus 176 ~~~~TtLa~~vy~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 223 (667)
+.||||||..+........ .=..++|++....|+...+.. +++.++.
T Consensus 132 GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 132 RTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp TCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 3467999999987643211 124689999988888776654 4455544
Done!