BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038112
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 143 NGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSV 202
N K GD A+ + + E YN L + ++K+GDY A E +++ + +
Sbjct: 17 NAYYKQGDYDEAIEYYQKALELYPNNAEAWYN-LGNAYYKQGDYDEAIEYYQKAL---EL 72
Query: 203 YPNVVT--YNVMINGLCKCGRFDECLEMWDR 231
YPN YN + N K G +DE +E + +
Sbjct: 73 YPNNAEAWYN-LGNAYYKQGDYDEAIEYYQK 102
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 147 KSGDLLGALAVFDEMFERGVETNVVCYNILI----------DGFFKKGDYMRAKEIWERL 196
K GD+L AL ++DE GV+ + YN+L+ + G R +I++++
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG-LSRGFDIFKQM 96
Query: 197 VMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGN 256
+++ V PN T+ + +M +MK + +Y + G C+ G+
Sbjct: 97 IVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155
Query: 257 VEGAERVYREM 267
+ A V M
Sbjct: 156 ADKAYEVDAHM 166
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 9/122 (7%)
Query: 417 AIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEA---------YSFVKEMLEKGWKPD 467
A+ L+ E R G + YN L+ E E+ + K+M+ P+
Sbjct: 45 ALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104
Query: 468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYS 527
T++ +MA + Q G P + Y + G C G + A ++ +
Sbjct: 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164
Query: 528 NM 529
+M
Sbjct: 165 HM 166
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 520 EDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHI 564
E A + MK P L +Y + G + GD DKA E+ H+
Sbjct: 122 EMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 143 NGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSV 202
N K GD A+ + + E YN L + ++K+GDY A E +++ +E
Sbjct: 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYN-LGNAYYKQGDYDEAIEYYQK-ALELDP 74
Query: 203 YPNVVTYNVMINGLCKCGRFDECLEMWDR 231
YN + N K G +DE +E + +
Sbjct: 75 NNAEAWYN-LGNAYYKQGDYDEAIEYYQK 102
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 18/130 (13%)
Query: 147 KSGDLLGALAVFDEMFERGVETNVVCYNILI----------DGFFKKGDYMRAKEIWERL 196
K GD+L AL ++DE GV+ + YN+L+ + G R +I+++
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG-LSRGFDIFKQX 96
Query: 197 VMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER---EKDSFTYCSFIHGLCK 253
+++ V PN T+ NG D+ +D +K+ + + +Y + G C+
Sbjct: 97 IVD-KVVPNEATF---TNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCR 152
Query: 254 AGNVEGAERV 263
G+ + A V
Sbjct: 153 KGDADKAYEV 162
>pdb|2NYF|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Nostoc Punctiforme
Length = 567
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 82 AYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV 141
A K S+ D + R N +GI R ++ + FLN+ G+ P VY +G++
Sbjct: 112 AGNKLSLADVRAAMLLRANSHLYGASGI--RLELIQRIETFLNA----GVTPHVYEFGSI 165
Query: 142 INGLVKSGDLLGALAVFDEMF 162
LV + GAL D F
Sbjct: 166 GXDLVPLSYITGALIGLDPSF 186
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMI 283
D + NE Y + H LC+ G + ERV G+ + AV+ MI
Sbjct: 9 DTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI 62
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 515 SAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDII 574
S G ++DALQ YS K + N V Y+ K GD KA E ++ L+PD
Sbjct: 16 SVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWG 72
Query: 575 SYNITLKGLCSCSRMSDAFEFLN 597
KG SR + A EFLN
Sbjct: 73 ------KGY---SRKAAALEFLN 86
>pdb|1TT7|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1Y9E|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
Length = 330
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 59 RILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQR---MNEIFGCEAGILCRKRQ 115
R + L+ I YCP DV +V + + PD+ L + R + E G IL + Q
Sbjct: 264 RGVSLLGIDSVYCPXDVRAAVWERXSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQ 323
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 143 NGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWER 195
N K GD A+ + + E YN L + ++K+GDY +A E +++
Sbjct: 17 NAYYKQGDYQKAIEYYQKALELDPNNASAWYN-LGNAYYKQGDYQKAIEYYQK 68
>pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936
Bound To Ni And Methionine
pdb|2PLM|A Chain A, Crystal Structure Of The Protein Tm0936 From Thermotoga
Maritima Complexed With Zn And S-Inosylhomocysteine
Length = 406
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Query: 378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMS-----RKGCSPT 432
+L + + V RM +HG K+ T + N N++ LF EM +K +P
Sbjct: 256 KLGNGIAPVQRMIEHGMKVTLGTDGAASN---------NSLNLFFEMRLASLLQKAQNPR 306
Query: 433 VVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSL 473
+ NT + + +A F +E+GW D++ L
Sbjct: 307 NLDVNTCLKMVTY--DGAQAMGFKSGKIEEGWNADLVVIDL 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,806,773
Number of Sequences: 62578
Number of extensions: 792241
Number of successful extensions: 2078
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2050
Number of HSP's gapped (non-prelim): 33
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)